Citrus Sinensis ID: 036585

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
Protein Sequence
MVGSQSEREDKVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAYVGRNRGCMD
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEEcccEEEEEccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEcccccccEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEEEccEEEEEEcccEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccccEEEEEcccccEEEEEccccEEEccccccccccccccccEEc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEcccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEcccccEEEEEccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEccccc
Coil and Loop (DISEMBL)
mvgsqseredKVSLELSEEILQSMEVGIYLVtasddesirlYDVTAATCLKTinskkygvdlvcftshpttviysskngwdESLRLLSLHdnkysryfkghhDRVVLLSLcsskdcfisgsldrtVLLWDQRAEKCQGLLRvqgrpaaayddqglvfgyekgpldifsvggdisdanvvkfsndGRLMLLTTMEGHIHVLDSFRgtllstynvkpvsrnstleasfspegmfvisgsgdgsvhaWSVRSGKEVaswmsfdteppvikwapgslmfvtgsselsfwipdlsklgayvgrnrgcmd
Flexible Loop (DISEMBL)
mvgsqseredkvSLELSEEILQSMEVGIYLVTasddesirLYDVTAATCLKTINSKKYGVDLVCFTSHPTTviysskngwDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSfwipdlsklgayvgrnrgcmd
Low Complexity Region (SEG)
MVGSQSEREDKVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAYVGRNRGCMD
Disordered region (IsUnstruct)
*******************ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK**************************************VASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAYVGR******
Disordered Region (DISOPRED)
*******REDKVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAYVG*******
Disordered Region (DISEMBL)
*************LELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAYVGRNRGCMD
Disordered Region (DISPRO)
*****SEREDKVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAYVGRNR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGSQSEREDKVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAYVGRNRGCMD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	304	2.2.26 [Sep-21-2011]
Q58E77	313	WD repeat-containing prot	N/A	no	0.934	0.907	0.404	1e-58
Q6GL39	313	WD repeat-containing prot	yes	no	0.934	0.907	0.398	2e-58
Q5ZMV7	313	WD repeat-containing prot	yes	no	0.934	0.907	0.407	4e-58
Q6NV31	313	WD repeat-containing prot	yes	no	0.934	0.907	0.401	2e-57
Q8BFQ4	313	WD repeat-containing prot	yes	no	0.934	0.907	0.401	3e-57
Q6UXN9	313	WD repeat-containing prot	yes	no	0.934	0.907	0.401	3e-57
Q640J6	313	WD repeat-containing prot	N/A	no	0.934	0.907	0.394	4e-57
P36104	329	COMPASS component SWD2 OS	yes	no	0.855	0.790	0.301	2e-25
O60137	357	Set1 complex component sw	yes	no	0.648	0.551	0.320	8e-24
Q9UT39	341	Uncharacterized WD repeat	no	no	0.845	0.753	0.267	9e-24

>sp|Q58E77|WD82B_XENLA WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-b PE=2 SV=1

 Score =  226 bits (577), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/304 (40%), Positives = 183/304 (60%), Gaps = 20/304 (6%)

Query: 5   QSEREDKVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 62
           +S R  KV  E S++I        G  ++++SDD+SI LYD       +T+ SKKYGVDL
Sbjct: 9   RSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDL 68

Query: 63  VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
           + +T    TV+YSS N  D+++R LSLHDNKY RYF GH  RVV LS+    D FISGSL
Sbjct: 69  IRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVSLSMSPVDDTFISGSL 127

Query: 123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIF 167
           D+T+ LWD R+  CQGL+ +QG+P  ++D +GL+F                ++KGP   F
Sbjct: 128 DKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGINSEMVKLYDLRSFDKGPFATF 187

Query: 168 SVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
            +  D   +   +KFSNDG+L+LL+T  G + ++D+F+G ++ T+     S+  TLEASF
Sbjct: 188 KMQYDRTCEWTALKFSNDGKLILLSTNGGFLRLVDAFKGAVMHTFGGYNNSKAVTLEASF 247

Query: 227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP-PVIKWAPGSLMFVTGSSELSFW 285
           +P+  F++ GS DG +H W+  SG +VA      T P   +++ P  + F +  S ++FW
Sbjct: 248 TPDSQFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFW 307

Query: 286 IPDL 289
           +P +
Sbjct: 308 LPTI 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.
Xenopus laevis (taxid: 8355)

>sp|Q6GL39|WDR82_XENTR WD repeat-containing protein 82 OS=Xenopus tropicalis GN=wdr82 PE=2 SV=1

 Score =  226 bits (575), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 183/304 (60%), Gaps = 20/304 (6%)

Query: 5   QSEREDKVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 62
           +S R  KV  E S++I        G  ++++SDD+SI LYD       +T+ SKKYGVDL
Sbjct: 9   RSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDL 68

Query: 63  VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
           + +T    TV+YSS N  D+++R LSLHDNKY RYF GH  RVV LS+    D FISGSL
Sbjct: 69  IRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSL 127

Query: 123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIF 167
           D+T+ LWD R+  CQGL+ +QG+P  ++D +GL+F                ++KGP   F
Sbjct: 128 DKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATF 187

Query: 168 SVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
            +  D   +   +KFSNDG+L+L++T  G + ++D+F+G ++ T+     S+  TLEA+F
Sbjct: 188 KMQYDRTCEWTALKFSNDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSKAVTLEATF 247

Query: 227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP-PVIKWAPGSLMFVTGSSELSFW 285
           +P+  F++ GS DG +H W+  SG +VA      T P   +++ P  + F +  S ++FW
Sbjct: 248 TPDSQFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFTSACSNMAFW 307

Query: 286 IPDL 289
           +P +
Sbjct: 308 LPTI 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZMV7|WDR82_CHICK WD repeat-containing protein 82 OS=Gallus gallus GN=WDR82 PE=2 SV=1

 Score =  225 bits (573), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 124/304 (40%), Positives = 183/304 (60%), Gaps = 20/304 (6%)

Query: 5   QSEREDKVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 62
           +S R  KV  E S++I        G  ++++SDD+SI LYD       +T+ SKKYGVDL
Sbjct: 9   RSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDL 68

Query: 63  VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
           + +T    TV+YSS N  D+++R LSLHDNKY RYF GH  RVV LS+    D FISGSL
Sbjct: 69  IRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHTKRVVALSMSPVDDTFISGSL 127

Query: 123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIF 167
           D+T+ LWD R+  CQGL+ +QG+P  ++D +GL+F                ++KGP   F
Sbjct: 128 DKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATF 187

Query: 168 SVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
            +  D   +   +KFSNDG+L+L++T  G I ++D+F+G +L T+     S+  TLEASF
Sbjct: 188 KMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSKAVTLEASF 247

Query: 227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP-PVIKWAPGSLMFVTGSSELSFW 285
           +P+  F++ GS DG +H W+  SG +VA      T P   +++ P  + F +  S ++FW
Sbjct: 248 TPDSQFIMIGSEDGKIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFW 307

Query: 286 IPDL 289
           +P +
Sbjct: 308 LPTI 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Gallus gallus (taxid: 9031)

>sp|Q6NV31|WDR82_DANRE WD repeat-containing protein 82 OS=Danio rerio GN=wdr82 PE=2 SV=1

 Score =  223 bits (567), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 183/304 (60%), Gaps = 20/304 (6%)

Query: 5   QSEREDKVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 62
           +S R  KV  E S++I        G  ++++SDD+SI LYD       +T+ SKKYGVDL
Sbjct: 9   RSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDL 68

Query: 63  VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
           + +T    TV+YSS N  D+++R LSLHDNKY RYF GH+ RVV LS+    D FISGSL
Sbjct: 69  IRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVDDTFISGSL 127

Query: 123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIF 167
           D+T+ LWD R+  CQGL+ +QG+P  ++D +GL+F                ++KGP   F
Sbjct: 128 DKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATF 187

Query: 168 SVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
            +  +   +   +KFSNDG+L+L++T  G + VLD+F+G +L ++     S+   LEASF
Sbjct: 188 KLQYERTCEWTGLKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSKGVILEASF 247

Query: 227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP-PVIKWAPGSLMFVTGSSELSFW 285
           +P+  F++ GS DG +H W+  SG +VA      T P   +++ P  + F +  S ++FW
Sbjct: 248 TPDSQFIMIGSEDGKIHVWNAESGMKVALLDGKHTGPVTCLQFNPKFMTFASACSNMAFW 307

Query: 286 IPDL 289
           +P +
Sbjct: 308 LPTI 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Danio rerio (taxid: 7955)

>sp|Q8BFQ4|WDR82_MOUSE WD repeat-containing protein 82 OS=Mus musculus GN=Wdr82 PE=1 SV=1

 Score =  222 bits (565), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 182/304 (59%), Gaps = 20/304 (6%)

Query: 5   QSEREDKVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 62
           +S R  KV  E S++I        G  ++++SDD+SI LYD       +T+ SKKYGVDL
Sbjct: 9   RSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDL 68

Query: 63  VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
           + +T    TV+YSS N  D+++R LSLHDNKY RYF GH  RVV LS+    D FISGSL
Sbjct: 69  IRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSL 127

Query: 123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIF 167
           D+T+ LWD R+  CQGL+ +QG+P  ++D +GL+F                ++KGP   F
Sbjct: 128 DKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATF 187

Query: 168 SVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
            +  D   +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+  TLEASF
Sbjct: 188 KMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASF 247

Query: 227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP-PVIKWAPGSLMFVTGSSELSFW 285
           +P+  F++ GS DG +H W+  SG +VA      T P   +++ P  + F +  S ++FW
Sbjct: 248 TPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFW 307

Query: 286 IPDL 289
           +P +
Sbjct: 308 LPTI 311

Regulatory component of the SET1 complex implicated in the tethering of this complex to transcriptional start sites of active genes. Facilitates histone H3 'Lys-4' methylation via recruitment of the SETD1A or SETD1B to the 'Ser-5' phosphorylated C-terminal domain (CTD) of RNA polymerase II large subunit (POLR2A). Component of PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase. Possible role in telomere length maintenance and in mRNA processing.

Mus musculus (taxid: 10090)

>sp|Q6UXN9|WDR82_HUMAN WD repeat-containing protein 82 OS=Homo sapiens GN=WDR82 PE=1 SV=1

 Score =  222 bits (565), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 182/304 (59%), Gaps = 20/304 (6%)

Query: 5   QSEREDKVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 62
           +S R  KV  E S++I        G  ++++SDD+SI LYD       +T+ SKKYGVDL
Sbjct: 9   RSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDL 68

Query: 63  VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
           + +T    TV+YSS N  D+++R LSLHDNKY RYF GH  RVV LS+    D FISGSL
Sbjct: 69  IRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSL 127

Query: 123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIF 167
           D+T+ LWD R+  CQGL+ +QG+P  ++D +GL+F                ++KGP   F
Sbjct: 128 DKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATF 187

Query: 168 SVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
            +  D   +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+  TLEASF
Sbjct: 188 KMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASF 247

Query: 227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP-PVIKWAPGSLMFVTGSSELSFW 285
           +P+  F++ GS DG +H W+  SG +VA      T P   +++ P  + F +  S ++FW
Sbjct: 248 TPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFW 307

Query: 286 IPDL 289
           +P +
Sbjct: 308 LPTI 311

Regulatory component of the SET1 complex implicated in the tethering of this complex to transcriptional start sites of active genes. Facilitates histone H3 'Lys-4' methylation via recruitment of the SETD1A or SETD1B to the 'Ser-5' phosphorylated C-terminal domain (CTD) of RNA polymerase II large subunit (POLR2A). Component of PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase.

Homo sapiens (taxid: 9606)

>sp|Q640J6|WD82A_XENLA WD repeat-containing protein 82-A OS=Xenopus laevis GN=wdr82-a PE=2 SV=1

 Score =  221 bits (564), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 181/304 (59%), Gaps = 20/304 (6%)

Query: 5   QSEREDKVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 62
           +S R  KV  E S++I        G  ++++SDD+SI LYD       +T+ SKKYGVDL
Sbjct: 9   RSFRVAKVFRENSDKINCFDFSPTGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDL 68

Query: 63  VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
           + +T    TV+YSS N  D+++R LSLHDNKY RYF GH  RVV LS+    D FIS SL
Sbjct: 69  IRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISASL 127

Query: 123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIF 167
           D+T+ LWD R+  CQGL+ +QG+P  ++D +GL+F                ++KGP   F
Sbjct: 128 DKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATF 187

Query: 168 SVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
            +  D   +   +KFS DG+L+L++T  G + ++D+F+G ++ T+     S+  TLEASF
Sbjct: 188 KMQYDRTCEWTSLKFSQDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSKAVTLEASF 247

Query: 227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP-PVIKWAPGSLMFVTGSSELSFW 285
           +P+  F++ GS DG +H W+  SG +VA      T P   +++ P  + F +  S ++FW
Sbjct: 248 TPDSQFIMIGSEDGKIHVWNCESGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFW 307

Query: 286 IPDL 289
           +P +
Sbjct: 308 LPTI 311

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Xenopus laevis (taxid: 8355)

>sp|P36104|SWD2_YEAST COMPASS component SWD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWD2 PE=1 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 133/292 (45%), Gaps = 32/292 (10%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-NGWDESLR 85
           G +L+T+S +++++LY  T    L TI SKKYG     FT      IYSS    +D  ++
Sbjct: 39  GQFLLTSSSNDTMQLYSATNCKFLDTIASKKYGCHSAIFTHAQNECIYSSTMKNFD--IK 96

Query: 86  LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR 145
            L+L  N+Y RYF GH   V  L +    D F+S S D +V LWD +  K Q ++     
Sbjct: 97  YLNLETNQYLRYFSGHGALVNDLKMNPVNDTFLSSSYDESVRLWDLKISKPQVIIPSLVP 156

Query: 146 PAAAYDDQGLVFGY----------------EKGPLDIFSVG-GDISDANVVKFSNDGRLM 188
              AYD  GLVF                  ++GP  I  +     S  N ++FSN+G+ +
Sbjct: 157 NCIAYDPSGLVFALGNPENFEIGLYNLKKIQEGPFLIIKINDATFSQWNKLEFSNNGKYL 216

Query: 189 LLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLE---ASFSPEGMFVISGSGDGSVHA 244
           L+ +  G   + D+F G  L      +       L+   A F+P+G FV+    DG +  
Sbjct: 217 LVGSSIGKHLIFDAFTGQQLFELIGTRAFPMREFLDSGSACFTPDGEFVLGTDYDGRIAI 276

Query: 245 WS--------VRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPD 288
           W+        V   +     +S +T P  I + P   MFVT    + F++ D
Sbjct: 277 WNHSDSISNKVLRPQGFIPCVSHETCPRSIAFNPKYSMFVTADETVDFYVYD 328

Involved in mediating RNA polymerase II termination. Component of the cleavage and polyadenylation factor (CPF) complex, which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. Component of the APT complex, which may be involved in polyadenylation-independent transcript 3'-end formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O60137|SWD2_SCHPO Set1 complex component swd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swd2 PE=3 SV=1

 Score =  111 bits (277), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 115/228 (50%), Gaps = 31/228 (13%)

Query: 36  DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS 95
           D++++LY+  +   +K++ SKKYG  L  FT H  ++I++S    D ++R L +  N+Y 
Sbjct: 47  DDTLQLYNCISGKFVKSLASKKYGAHLGRFTHHSNSLIHASTKE-DNTVRYLDVVTNRYL 105

Query: 96  RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL 155
           RYF GH   V  + +  + + F+S SLD T+ LWD R+  CQGLL V     AA+D  GL
Sbjct: 106 RYFPGHKQTVTSIDVSPADETFLSASLDNTIRLWDLRSPNCQGLLNVSSPVVAAFDATGL 165

Query: 156 VFG---------------------YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME 194
           +F                      ++  PL        I++   V+FS DG+ +LLTT  
Sbjct: 166 IFASVSERKYKISLYNIKSFDARPFQDIPLTFLPPHVRIAN---VEFSTDGKYLLLTTGN 222

Query: 195 GHIHVLDSFRGTLL----STYNVKPVSRNSTLEAS--FSPEGMFVISG 236
              +V+D++ G+ L    S  + K    N T  AS   SP+  F+ + 
Sbjct: 223 DFHYVIDAYSGSELLRVPSKVSTKTQDGNLTYYASACMSPDSKFLFTS 270

The Set1 complex specifically methylates 'Lys-4' of histone H3.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9UT39|YIQ4_SCHPO Uncharacterized WD repeat-containing protein C824.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.04 PE=4 SV=1

 Score =  110 bits (276), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 142/299 (47%), Gaps = 42/299 (14%)

Query: 31  VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH 90
            T S D+++++YD      + TI   + G+++  FT H   ++ S+  G ++ ++ +S++
Sbjct: 38  TTCSADDTVQIYDALDPKQVHTITCFETGIEVARFTHHDHNLLLSTTKG-NKDIQYVSIY 96

Query: 91  DNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD-QRAEKCQGLLRVQGRPAAA 149
           DNK   YF GH D V  + +   +D F+S + D+T+ LW   ++ +C G L +      A
Sbjct: 97  DNKRISYFSGHTDIVSSIEVSPIEDQFVSTANDKTLKLWKMNQSSRCLGNLDLPSLGIPA 156

Query: 150 YDDQGLVFG----------------YEKGPLDIFSVGGD-----------ISDANVVKFS 182
           YD  GLVF                 Y   P   F++              + +   ++FS
Sbjct: 157 YDPTGLVFAVACHSLSRIFLYDVRNYGSDPFSTFTIDDSRYLSRFSFPPMMPEWKHMEFS 216

Query: 183 NDGRLMLLTTMEGHIHVLDSFRGTLLST---YNVKPVSRN-STLEASFSPEGMFVISGSG 238
           NDG+ +LL+T     ++LD+F G +LS    +   P S N      +F P+G FVI  + 
Sbjct: 217 NDGKCILLSTRANVHYILDAFSGDVLSRLEDFQELPFSNNFHGGSTTFVPQGNFVIGSAD 276

Query: 239 DGSVHAWSVR-----SGKEVASWMSFDTE----PPVIKWAPGSLMFVTGSSELSFWIPD 288
           D +++ W++R      GK         ++    P ++K+ P     +T  S+L FW+P+
Sbjct: 277 DRTLNVWNLRHTFHHKGKTRPPEHRIVSQSIINPGLVKYNPRYDQLLTAGSQLVFWLPE 335

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
297735019	522	unnamed protein product [Vitis vinifera]	0.970	0.565	0.823	1e-152
225431149	334	PREDICTED: WD repeat-containing protein	0.970	0.883	0.823	1e-150
147857700	328	hypothetical protein VITISV_020464 [Viti	0.967	0.896	0.819	1e-149
449491362	332	PREDICTED: WD repeat-containing protein	0.983	0.900	0.801	1e-149
449434162	332	PREDICTED: WD repeat-containing protein	0.983	0.900	0.801	1e-149
255579793	332	COMPASS component SWD2, putative [Ricinu	0.983	0.900	0.798	1e-149
356563997	334	PREDICTED: WD repeat-containing protein	0.983	0.895	0.796	1e-146
356554143	334	PREDICTED: WD repeat-containing protein	0.983	0.895	0.799	1e-146
217074372	334	unknown [Medicago truncatula] gi|3885018	0.983	0.895	0.754	1e-138
297797759	331	predicted protein [Arabidopsis lyrata su	0.967	0.888	0.752	1e-136

>gi|297735019|emb|CBI17381.3| unnamed protein product [Vitis vinifera]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 270/328 (82%), Positives = 279/328 (85%), Gaps = 33/328 (10%)

Query: 5   QSEREDKVSLELSEEILQSMEVGI-------------------YLVTASDDESIRLYDVT 45
           QSEREDKV+LEL+EEI QSMEVG+                   YLVTASDDESIRLYDV 
Sbjct: 195 QSEREDKVALELTEEIFQSMEVGMAFRDYSGRISSMDFHRTSSYLVTASDDESIRLYDVA 254

Query: 46  AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV 105
             TCLKTINSKKYGVDLVCFTS PTTVIYSSKNGWDESLRLLSLHDNKY RYFKGHHDRV
Sbjct: 255 TGTCLKTINSKKYGVDLVCFTSDPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV 314

Query: 106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG------- 158
           V LSLCS K+CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA AYDDQGLVF        
Sbjct: 315 VSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAFGGYV 374

Query: 159 -------YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 211
                  Y+KGP +IFSVGGDISDANVVKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTY
Sbjct: 375 RLFDARKYDKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTY 434

Query: 212 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPG 271
           NVKPVS  STLEASFSPEGMFVISGSGDGSV+AWSVRSGKEVASWMS +TEPPVIKWAPG
Sbjct: 435 NVKPVSSTSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAPG 494

Query: 272 SLMFVTGSSELSFWIPDLSKLGAYVGRN 299
           SLMFVTGSSELSFWIPDLSKLGAY GR 
Sbjct: 495 SLMFVTGSSELSFWIPDLSKLGAYAGRK 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431149|ref|XP_002268226.1| PREDICTED: WD repeat-containing protein 82-B-like [Vitis vinifera]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/328 (82%), Positives = 279/328 (85%), Gaps = 33/328 (10%)

Query: 5   QSEREDKVSLELSEEILQSMEVGI-------------------YLVTASDDESIRLYDVT 45
           QSEREDKV+LEL+EEI QSMEVG+                   YLVTASDDESIRLYDV 
Sbjct: 7   QSEREDKVALELTEEIFQSMEVGMAFRDYSGRISSMDFHRTSSYLVTASDDESIRLYDVA 66

Query: 46  AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV 105
             TCLKTINSKKYGVDLVCFTS PTTVIYSSKNGWDESLRLLSLHDNKY RYFKGHHDRV
Sbjct: 67  TGTCLKTINSKKYGVDLVCFTSDPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRV 126

Query: 106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG------- 158
           V LSLCS K+CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA AYDDQGLVF        
Sbjct: 127 VSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAFGGYV 186

Query: 159 -------YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY 211
                  Y+KGP +IFSVGGDISDANVVKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTY
Sbjct: 187 RLFDARKYDKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTY 246

Query: 212 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPG 271
           NVKPVS  STLEASFSPEGMFVISGSGDGSV+AWSVRSGKEVASWMS +TEPPVIKWAPG
Sbjct: 247 NVKPVSSTSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAPG 306

Query: 272 SLMFVTGSSELSFWIPDLSKLGAYVGRN 299
           SLMFVTGSSELSFWIPDLSKLGAY GR 
Sbjct: 307 SLMFVTGSSELSFWIPDLSKLGAYAGRK 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857700|emb|CAN80813.1| hypothetical protein VITISV_020464 [Vitis vinifera]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 268/327 (81%), Positives = 278/327 (85%), Gaps = 33/327 (10%)

Query: 6   SEREDKVSLELSEEILQSMEVGI-------------------YLVTASDDESIRLYDVTA 46
           +EREDKV+LEL+EEI QSMEVG+                   YLVTASDDESIRLYDV  
Sbjct: 2   AEREDKVALELTEEIFQSMEVGMAFRDYSGRISSMDFHRTSSYLVTASDDESIRLYDVAT 61

Query: 47  ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV 106
            TCLKTINSKKYGVDLVCFTS PTTVIYSSKNGWDESLRLLSLHDNKY RYFKGHHDRVV
Sbjct: 62  GTCLKTINSKKYGVDLVCFTSDPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVV 121

Query: 107 LLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG-------- 158
            LSLCS K+CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA AYDDQGLVF         
Sbjct: 122 SLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAFGGYVR 181

Query: 159 ------YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 212
                 Y+KGP +IFSVGGDISDANVVKFSNDGRLMLLTTM+GHIHVLDSFRGTLLSTYN
Sbjct: 182 LFDARKYDKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYN 241

Query: 213 VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS 272
           VKPVS  STLEASFSPEGMFVISGSGDGSV+AWSVRSGKEVASWMS +TEPPVIKWAPGS
Sbjct: 242 VKPVSSTSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAPGS 301

Query: 273 LMFVTGSSELSFWIPDLSKLGAYVGRN 299
           LMFVTGSSELSFWIPDLSKLGAY GR 
Sbjct: 302 LMFVTGSSELSFWIPDLSKLGAYAGRK 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491362|ref|XP_004158872.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/332 (80%), Positives = 283/332 (85%), Gaps = 33/332 (9%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGI-------------------YLVTASDDESIRL 41
           M GSQSERE+KVSLEL+EEILQSMEVG+                   YLVTASDDESIRL
Sbjct: 1   MGGSQSEREEKVSLELTEEILQSMEVGMTFRDYNGRISSMDFHRTSSYLVTASDDESIRL 60

Query: 42  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH 101
           YDV +ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL+DNKY RYF+GH
Sbjct: 61  YDVASATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFRGH 120

Query: 102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG--- 158
           HDRVV LSLC+ K+CFISGSLDRTVLLWDQRAEKCQGLLRVQG+PA AYD+QG+VF    
Sbjct: 121 HDRVVSLSLCARKECFISGSLDRTVLLWDQRAEKCQGLLRVQGKPATAYDEQGVVFAIAF 180

Query: 159 -----------YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 207
                      YEKGP DIFSVG D+SDAN+VKFSNDGRLMLLTT +GHIHVLDSFRGTL
Sbjct: 181 GGYIRMFDARKYEKGPFDIFSVGEDLSDANIVKFSNDGRLMLLTTSDGHIHVLDSFRGTL 240

Query: 208 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIK 267
           LSTYNVKP+SRN TLEASFSPEGMFVISGSGDGSV+AWSVRSGKEVASWMS + EPPVIK
Sbjct: 241 LSTYNVKPISRNLTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTEMEPPVIK 300

Query: 268 WAPGSLMFVTGSSELSFWIPDLSKLGAYVGRN 299
           WAPGSLMF TGSSELSFWIPDLSKLGAYV R 
Sbjct: 301 WAPGSLMFATGSSELSFWIPDLSKLGAYVDRK 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434162|ref|XP_004134865.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/332 (80%), Positives = 283/332 (85%), Gaps = 33/332 (9%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGI-------------------YLVTASDDESIRL 41
           M GSQSERE+KVSLEL+EEILQSMEVG+                   YLVTASDDESIRL
Sbjct: 1   MGGSQSEREEKVSLELTEEILQSMEVGMTFRDYNGRISSMDFHKTSSYLVTASDDESIRL 60

Query: 42  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH 101
           YDV +ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL+DNKY RYF+GH
Sbjct: 61  YDVASATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFRGH 120

Query: 102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG--- 158
           HDRVV LSLC+ K+CFISGSLDRTVLLWDQRAEKCQGLLRVQG+PA AYD+QG+VF    
Sbjct: 121 HDRVVSLSLCARKECFISGSLDRTVLLWDQRAEKCQGLLRVQGKPATAYDEQGVVFAIAF 180

Query: 159 -----------YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 207
                      YEKGP DIFSVG D+SDAN+VKFSNDGRLMLLTT +GHIHVLDSFRGTL
Sbjct: 181 GGYIRMFDARKYEKGPFDIFSVGEDLSDANIVKFSNDGRLMLLTTSDGHIHVLDSFRGTL 240

Query: 208 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIK 267
           LSTYNVKP+SRN TLEASFSPEGMFVISGSGDGSV+AWSVRSGKEVASWMS + EPPVIK
Sbjct: 241 LSTYNVKPISRNLTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTEMEPPVIK 300

Query: 268 WAPGSLMFVTGSSELSFWIPDLSKLGAYVGRN 299
           WAPGSLMF TGSSELSFWIPDLSKLGAYV R 
Sbjct: 301 WAPGSLMFATGSSELSFWIPDLSKLGAYVDRK 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579793|ref|XP_002530734.1| COMPASS component SWD2, putative [Ricinus communis] gi|223529698|gb|EEF31640.1| COMPASS component SWD2, putative [Ricinus communis]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 265/332 (79%), Positives = 283/332 (85%), Gaps = 33/332 (9%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGI-------------------YLVTASDDESIRL 41
           MVG Q ERE+KVSLEL+EEILQSME+G+                   YLVTASDDESIRL
Sbjct: 1   MVGVQPEREEKVSLELTEEILQSMEIGMVFRDYNGRISSMDFHKTSSYLVTASDDESIRL 60

Query: 42  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH 101
           YDV++A CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL+DNKY RYFKGH
Sbjct: 61  YDVSSAACLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFKGH 120

Query: 102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF---- 157
           HDRVV LSLC+ K+CFISGSLDRTVLLWDQRAEKCQGLL VQGRPA AYDDQGLVF    
Sbjct: 121 HDRVVSLSLCARKECFISGSLDRTVLLWDQRAEKCQGLLHVQGRPATAYDDQGLVFTIAF 180

Query: 158 ----------GYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 207
                      YEKGP +IFSVGGD+SDA+VVKFSNDGRLMLLTT++GHIHVLDSFRGTL
Sbjct: 181 GGFIRMFDSRKYEKGPFEIFSVGGDVSDAHVVKFSNDGRLMLLTTVDGHIHVLDSFRGTL 240

Query: 208 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIK 267
           LSTYNVKPV  NSTLEASFSPEGMFV+SGSGDGSVHAWSVRSGKEVASWM+++TEP VIK
Sbjct: 241 LSTYNVKPVLTNSTLEASFSPEGMFVVSGSGDGSVHAWSVRSGKEVASWMTYETEPHVIK 300

Query: 268 WAPGSLMFVTGSSELSFWIPDLSKLGAYVGRN 299
           WAPGSLMF TGSSELSFWIPDLSKL AYVGR 
Sbjct: 301 WAPGSLMFATGSSELSFWIPDLSKLAAYVGRK 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563997|ref|XP_003550243.1| PREDICTED: WD repeat-containing protein 82-B-like [Glycine max]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 266/334 (79%), Positives = 279/334 (83%), Gaps = 35/334 (10%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGI-------------------YLVTASDDESIRL 41
           M G+Q ERE+KVSLELSEEILQSMEVG+                   YLVTASDDESIRL
Sbjct: 1   MGGTQVEREEKVSLELSEEILQSMEVGMSFKDYNGRISSLDFHRASSYLVTASDDESIRL 60

Query: 42  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH 101
           YDVT  TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY RYFKGH
Sbjct: 61  YDVTGGTCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120

Query: 102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG--- 158
           HDRVV LSLCS KDCFISGSLDRTVLLWDQRAEKCQGLL VQGRPA +YDD GLVF    
Sbjct: 121 HDRVVSLSLCSRKDCFISGSLDRTVLLWDQRAEKCQGLLHVQGRPAISYDDPGLVFAIAF 180

Query: 159 -----------YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 207
                      YEKGP +IFSVGGDISDANVVKFSNDGRLMLLTT +GHIHVLD+FRGTL
Sbjct: 181 GGYIRMFDARKYEKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTADGHIHVLDTFRGTL 240

Query: 208 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF--DTEPPV 265
           LSTYNV PVS NSTLEASFSPEGMF+ISGSG+GS++AWSVRSGKEVASW S   DT PPV
Sbjct: 241 LSTYNVTPVSCNSTLEASFSPEGMFIISGSGEGSIYAWSVRSGKEVASWRSATSDTGPPV 300

Query: 266 IKWAPGSLMFVTGSSELSFWIPDLSKLGAYVGRN 299
           IKWAPGSLMF TGSSELSFW+PDLSKLG+YVGR 
Sbjct: 301 IKWAPGSLMFATGSSELSFWVPDLSKLGSYVGRK 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554143|ref|XP_003545408.1| PREDICTED: WD repeat-containing protein 82-B-like [Glycine max]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/334 (79%), Positives = 279/334 (83%), Gaps = 35/334 (10%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGI-------------------YLVTASDDESIRL 41
           M G+Q ERE+KVSLEL EEILQSMEVG+                   YLVTASDDESIRL
Sbjct: 1   MGGTQVEREEKVSLELCEEILQSMEVGMSFKDYNGRISSLDFHRASNYLVTASDDESIRL 60

Query: 42  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH 101
           YDVT+ TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY RYFKGH
Sbjct: 61  YDVTSGTCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120

Query: 102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG--- 158
           HDRVV LSLCS KDCFISGSLDRTVLLWDQRAEKCQGLL VQGRPA +YDDQGLVF    
Sbjct: 121 HDRVVSLSLCSRKDCFISGSLDRTVLLWDQRAEKCQGLLHVQGRPAISYDDQGLVFAIAF 180

Query: 159 -----------YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 207
                      YEKGP +IFSVGGDISDANVVKFSNDGRLMLLTT +GHIHVLDSFRGTL
Sbjct: 181 GGYIRMFDARKYEKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTADGHIHVLDSFRGTL 240

Query: 208 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF--DTEPPV 265
           LSTY V P+S NSTLEASFSPEGMFVISGSGDGS++AWSVRSGKEVASW S   DT PPV
Sbjct: 241 LSTYIVTPISCNSTLEASFSPEGMFVISGSGDGSIYAWSVRSGKEVASWRSATSDTGPPV 300

Query: 266 IKWAPGSLMFVTGSSELSFWIPDLSKLGAYVGRN 299
           IKWAPGSLMF TGSSELSFW+PDLSKLG+YVGR 
Sbjct: 301 IKWAPGSLMFATGSSELSFWVPDLSKLGSYVGRK 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074372|gb|ACJ85546.1| unknown [Medicago truncatula] gi|388501886|gb|AFK39009.1| unknown [Medicago truncatula]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/334 (75%), Positives = 272/334 (81%), Gaps = 35/334 (10%)

Query: 1   MVGSQSEREDKVSLELSEEILQSMEVGI-------------------YLVTASDDESIRL 41
           M G+  E+E+KVSL+LSEEIL SMEVG+                   YLVTASDDESIRL
Sbjct: 1   MGGTPGEKEEKVSLDLSEEILLSMEVGMSFKDYNGRISSMDFHRASSYLVTASDDESIRL 60

Query: 42  YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH 101
           YDV A T LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY RYFKGH
Sbjct: 61  YDVAAGTSLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH 120

Query: 102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG--- 158
           HDRVV LSLC  KDCFISGSLDRTVLLWDQRAEKCQGLL VQGRPA +YDDQGLVF    
Sbjct: 121 HDRVVSLSLCPRKDCFISGSLDRTVLLWDQRAEKCQGLLHVQGRPAISYDDQGLVFAIAF 180

Query: 159 -----------YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 207
                      YEKGP ++FSVGGD+SDANVVKFSNDGRL+L+TT +GHIHVLDSFRGTL
Sbjct: 181 GGYIRMFDARMYEKGPFELFSVGGDVSDANVVKFSNDGRLLLVTTTDGHIHVLDSFRGTL 240

Query: 208 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF--DTEPPV 265
           L  YNV PVS NSTLEASFSP+GMFVIS SGDGS++AWSVRSGKEVASW S   D  PPV
Sbjct: 241 LFAYNVTPVSCNSTLEASFSPDGMFVISSSGDGSIYAWSVRSGKEVASWRSATSDIGPPV 300

Query: 266 IKWAPGSLMFVTGSSELSFWIPDLSKLGAYVGRN 299
           +KWAPGSLMF TGSSELSFW+PDLSK+GA+VG+ 
Sbjct: 301 VKWAPGSLMFATGSSELSFWVPDLSKIGAFVGKK 334

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797759|ref|XP_002866764.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312599|gb|EFH43023.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 246/327 (75%), Positives = 268/327 (81%), Gaps = 33/327 (10%)

Query: 6   SEREDKVSLELSEEILQSMEVGIY-------------------LVTASDDESIRLYDVTA 46
           +ERED+VSLELSEEI+QSME G                     +VTASDD+SIRLYDV +
Sbjct: 5   TEREDRVSLELSEEIIQSMEPGAVFRDYNCRISSIDFHKTSTCMVTASDDDSIRLYDVAS 64

Query: 47  ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV 106
           ATCLKTINSKKYGVDLVCFTSHPTTVIYSS+NGWD+SLRLLSLHDNKY RYFKGHHDRVV
Sbjct: 65  ATCLKTINSKKYGVDLVCFTSHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVV 124

Query: 107 LLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG-------- 158
            LSLCS  +CFISGSLDRTVLLWDQR EKCQGLLRVQGRPAAAYDDQGLVF         
Sbjct: 125 SLSLCSGGECFISGSLDRTVLLWDQRVEKCQGLLRVQGRPAAAYDDQGLVFAIAFGGYIR 184

Query: 159 ------YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN 212
                 YEKGP +IFSVGGD+S+ANVVKFSNDGRLMLLTTM+G IHVLDSFRGTLLST++
Sbjct: 185 MFDARMYEKGPFEIFSVGGDLSEANVVKFSNDGRLMLLTTMDGFIHVLDSFRGTLLSTFS 244

Query: 213 VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS 272
           VKPV+  STL+A+FSPEGMFV+SGSGDGS HAW VRSGK+V SWM   +EPPVIKWAPGS
Sbjct: 245 VKPVAAESTLDATFSPEGMFVVSGSGDGSTHAWGVRSGKQVHSWMGIGSEPPVIKWAPGS 304

Query: 273 LMFVTGSSELSFWIPDLSKLGAYVGRN 299
            MFVTGSSEL+F IPDLSKL AY  R 
Sbjct: 305 PMFVTGSSELAFVIPDLSKLPAYAIRK 331

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
TAIR|locus:2154996	331	AT5G66240 "AT5G66240" [Arabido	0.884	0.812	0.798	4.7e-119
TAIR|locus:2222612	330	AT5G14530 "AT5G14530" [Arabido	0.848	0.781	0.487	1.1e-66
DICTYBASE|DDB_G0278945	319	DDB_G0278945 "WD repeat-contai	0.927	0.884	0.438	6.8e-65
UNIPROTKB|Q5ZMV7	313	WDR82 "WD repeat-containing pr	0.819	0.795	0.432	8.3e-51
ZFIN|ZDB-GENE-030131-333	600	wdr82 "WD repeat domain contai	0.934	0.473	0.401	1.7e-50
UNIPROTKB|F1MG94	602	WDR82 "Uncharacterized protein	0.957	0.483	0.401	4.6e-50
UNIPROTKB|E2RGF2	313	WDR82 "Uncharacterized protein	0.819	0.795	0.425	5.8e-50
UNIPROTKB|Q6UXN9	313	WDR82 "WD repeat-containing pr	0.819	0.795	0.425	5.8e-50
UNIPROTKB|F2Z5U3	313	WDR82 "Uncharacterized protein	0.819	0.795	0.425	5.8e-50
MGI|MGI:1924555	313	Wdr82 "WD repeat domain contai	0.819	0.795	0.425	5.8e-50

TAIR|locus:2154996 AT5G66240 "AT5G66240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
 Identities = 226/283 (79%), Positives = 246/283 (86%)

Query:    30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 89
             +VTASDD+SIRLYDV +ATCLKTINSKKYGVDLVCFTSHPTTVIYSS+NGWD+SLRLLSL
Sbjct:    48 MVTASDDDSIRLYDVASATCLKTINSKKYGVDLVCFTSHPTTVIYSSRNGWDDSLRLLSL 107

Query:    90 HDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA 149
             HDNKY RYFKGHHDRVV LSLCS  +CFISGSLDRTVLLWDQR EKCQGLLRVQGRPAAA
Sbjct:   108 HDNKYLRYFKGHHDRVVSLSLCSGGECFISGSLDRTVLLWDQRVEKCQGLLRVQGRPAAA 167

Query:   150 YDDQGLVFG--------------YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG 195
             YDDQGL+F               YEKGP +IFSVGGD+S+ANVVKFSNDGRLMLLTTM+G
Sbjct:   168 YDDQGLIFAIAFGGYIRMFDARMYEKGPFEIFSVGGDLSEANVVKFSNDGRLMLLTTMDG 227

Query:   196 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS 255
              IHVLDSFRGTLLST++VKPV+  STL+A+FSPEGMFV+SGSGDGS HAW VRSGK+V S
Sbjct:   228 FIHVLDSFRGTLLSTFSVKPVAGESTLDAAFSPEGMFVVSGSGDGSTHAWGVRSGKQVHS 287

Query:   256 WMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAYVGR 298
             WM   +EPPVIKW PGS MFVTGSSEL+F IPDLSKL AY  R
Sbjct:   288 WMGLGSEPPVIKWGPGSPMFVTGSSELAFVIPDLSKLPAYAIR 330

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2222612 AT5G14530 "AT5G14530" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 135/277 (48%), Positives = 187/277 (67%)

Query:    30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD---ESLRL 86
             LVT+S+D+S+RL+D+  A  LK    KK+G D VCFT HP+++I SS+   +   ESLR 
Sbjct:    39 LVTSSEDDSLRLFDIANAKQLKITYHKKHGTDRVCFTHHPSSLICSSRYNLESTGESLRY 98

Query:    87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             LS++DN+  RYFKGH DRVV L +    D F+SGSLDR+V LWD R   CQG+L ++GRP
Sbjct:    99 LSMYDNRILRYFKGHKDRVVSLCMSPINDSFMSGSLDRSVRLWDLRVNACQGILHLRGRP 158

Query:   147 AAAYDDQGLVFG---------------YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLT 191
             A AYD QGLVF                Y+KGP D F VGGD ++ N +KFSNDG+ MLLT
Sbjct:   159 AVAYDQQGLVFAIAMEGGAVKLFDSRCYDKGPFDTFLVGGDTAEVNDIKFSNDGKSMLLT 218

Query:   192 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251
             T   +I+VLD++RG     ++++P S+ + +EA+F+P+G +V+SGSGDG++HAW++ +  
Sbjct:   219 TTNNNIYVLDAYRGEKKCGFSLEP-SQGTPIEATFTPDGKYVLSGSGDGTLHAWNIENPS 277

Query:   252 EVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPD 288
             EVA W +       +KWAP   MFV  S+ L+FWIP+
Sbjct:   278 EVARWENNIGVVSCLKWAPRRAMFVAASTVLTFWIPN 314

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

DICTYBASE|DDB_G0278945 DDB_G0278945 "WD repeat-containing protein 82" [Dictyostelium discoideum (taxid:44689)]

 Score = 642 (231.1 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
 Identities = 132/301 (43%), Positives = 184/301 (61%)

Query:    11 KVSLELSEEILQSMEV---GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS 67
             K+  + +  ++ SM+    G  L+TASDDESI LY++      KT+NSKKYGVDL+ FT 
Sbjct:    19 KLHKDDNSSVINSMDFNKDGSLLITASDDESIHLYNIDTGELQKTLNSKKYGVDLIKFTH 78

Query:    68 HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL 127
             +  ++I +SKN WDESLR LSLHDNKY +YFKGH ++VV +S+    D F+SGSLD T+ 
Sbjct:    79 NNNSIICASKNSWDESLRYLSLHDNKYLKYFKGHRNKVVSISMSPINDMFLSGSLDDTIR 138

Query:   128 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIFSVGGD 172
             +WD R   CQGLLR  GRPA ++D QG++F                Y+KGP   FS+   
Sbjct:   139 MWDLRTNVCQGLLRRNGRPAVSFDPQGIIFATAVSVNTIKLYDLRNYDKGPFSSFSIDHP 198

Query:   173 IS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM 231
             I  +   +KF+ DG+ +LL+T    I ++DSF G +   Y        S +E+SFSP+  
Sbjct:   199 IPVEWTSMKFTADGKYILLSTKTNIIFLIDSFTGEVKQRYTSFKNDNGSVIESSFSPDAQ 258

Query:   232 FVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSK 291
             +V+SGS DG+VH W   +G+EVA W    +    ++W P S+M  T  S L+FWIP+ S 
Sbjct:   259 YVLSGSEDGTVHIWKTLTGEEVAVWGGHSSTVGRVQWNPRSMMAATACSNLAFWIPNDSV 318

Query:   292 L 292
             L
Sbjct:   319 L 319

GO:0030587 "sorocarp development" evidence=IMP

UNIPROTKB|Q5ZMV7 WDR82 "WD repeat-containing protein 82" [Gallus gallus (taxid:9031)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 116/268 (43%), Positives = 167/268 (62%)

Query:     5 QSEREDKVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 62
             +S R  KV  E S++I        G  ++++SDD+SI LYD       +T+ SKKYGVDL
Sbjct:     9 RSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDL 68

Query:    63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
             + +T    TV+YSS N  D+++R LSLHDNKY RYF GH  RVV LS+    D FISGSL
Sbjct:    69 IRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHTKRVVALSMSPVDDTFISGSL 127

Query:   123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIF 167
             D+T+ LWD R+  CQGL+ +QG+P  ++D +GL+F                ++KGP   F
Sbjct:   128 DKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATF 187

Query:   168 SVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
              +  D + +   +KFSNDG+L+L++T  G I ++D+F+G +L T+     S+  TLEASF
Sbjct:   188 KMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSKAVTLEASF 247

Query:   227 SPEGMFVISGSGDGSVHAWSVRSGKEVA 254
             +P+  F++ GS DG +H W+  SG +VA
Sbjct:   248 TPDSQFIMIGSEDGKIHVWNGESGMKVA 275

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-030131-333 wdr82 "WD repeat domain containing 82" [Danio rerio (taxid:7955)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 124/309 (40%), Positives = 183/309 (59%)

Query:     5 QSEREDKVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 62
             +S R  KV  E S++I        G  ++++SDD+SI LYD       +T+ SKKYGVDL
Sbjct:     9 RSFRVAKVFRENSDKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDL 68

Query:    63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
             + +T    TV+YSS N  D+++R LSLHDNKY RYF GH+ RVV LS+    D FISGSL
Sbjct:    69 IRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHNKRVVALSMSPVDDTFISGSL 127

Query:   123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIF 167
             D+T+ LWD R+  CQGL+ +QG+P  ++D +GL+F                ++KGP   F
Sbjct:   128 DKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATF 187

Query:   168 SVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
              +  + + +   +KFSNDG+L+L++T  G + VLD+F+G +L ++     S+   LEASF
Sbjct:   188 KLQYERTCEWTGLKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSKGVILEASF 247

Query:   227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWI 286
             +P+  F++ GS DG +H W+  SG +VA      T P  +     +  F+T +S  S   
Sbjct:   248 TPDSQFIMIGSEDGKIHVWNAESGMKVALLDGKHTGP--VTCLQFNPKFMTFASACS--- 302

Query:   287 PDLSKLGAY 295
              ++  LGAY
Sbjct:   303 -NMLVLGAY 310

GO:0003779 "actin binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MG94 WDR82 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 128/319 (40%), Positives = 186/319 (58%)

Query:     5 QSEREDKVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 62
             +S R  KV  E S++I        G  ++++SDD+SI LYD       +T+ SKKYGVDL
Sbjct:     9 RSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDL 68

Query:    63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
             + +T    TV+YSS N  D+++R LSLHDNKY RYF GH  RVV LS+    D FISGSL
Sbjct:    69 IRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSL 127

Query:   123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIF 167
             D+T+ LWD R+  CQGL+ +QG+P  ++D +GL+F                ++KGP   F
Sbjct:   128 DKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATF 187

Query:   168 SVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
              +  D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+  TLEASF
Sbjct:   188 KMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASF 247

Query:   227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWI 286
             +P+  F++ GS DG +H W+  SG +VA      T P  I     +  F+T +S  S   
Sbjct:   248 TPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGP--ITCLQFNPKFMTFASACS--- 302

Query:   287 PDLSKLGAYVGRNR-GCMD 304
              ++  LGA+  R   GC D
Sbjct:   303 -NMLVLGAF--RELVGCWD 318

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E2RGF2 WDR82 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 114/268 (42%), Positives = 166/268 (61%)

Query:     5 QSEREDKVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 62
             +S R  KV  E S++I        G  ++++SDD+SI LYD       +T+ SKKYGVDL
Sbjct:     9 RSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDL 68

Query:    63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
             + +T    TV+YSS N  D+++R LSLHDNKY RYF GH  RVV LS+    D FISGSL
Sbjct:    69 IRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSL 127

Query:   123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIF 167
             D+T+ LWD R+  CQGL+ +QG+P  ++D +GL+F                ++KGP   F
Sbjct:   128 DKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATF 187

Query:   168 SVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
              +  D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+  TLEASF
Sbjct:   188 KMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASF 247

Query:   227 SPEGMFVISGSGDGSVHAWSVRSGKEVA 254
             +P+  F++ GS DG +H W+  SG +VA
Sbjct:   248 TPDSQFIMIGSEDGKIHVWNGESGIKVA 275

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

UNIPROTKB|Q6UXN9 WDR82 "WD repeat-containing protein 82" [Homo sapiens (taxid:9606)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 114/268 (42%), Positives = 166/268 (61%)

Query:     5 QSEREDKVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 62
             +S R  KV  E S++I        G  ++++SDD+SI LYD       +T+ SKKYGVDL
Sbjct:     9 RSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDL 68

Query:    63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
             + +T    TV+YSS N  D+++R LSLHDNKY RYF GH  RVV LS+    D FISGSL
Sbjct:    69 IRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSL 127

Query:   123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIF 167
             D+T+ LWD R+  CQGL+ +QG+P  ++D +GL+F                ++KGP   F
Sbjct:   128 DKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATF 187

Query:   168 SVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
              +  D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+  TLEASF
Sbjct:   188 KMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASF 247

Query:   227 SPEGMFVISGSGDGSVHAWSVRSGKEVA 254
             +P+  F++ GS DG +H W+  SG +VA
Sbjct:   248 TPDSQFIMIGSEDGKIHVWNGESGIKVA 275

GO:0003682 "chromatin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0000785 "chromatin" evidence=IDA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

UNIPROTKB|F2Z5U3 WDR82 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 114/268 (42%), Positives = 166/268 (61%)

Query:     5 QSEREDKVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 62
             +S R  KV  E S++I        G  ++++SDD+SI LYD       +T+ SKKYGVDL
Sbjct:     9 RSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDL 68

Query:    63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
             + +T    TV+YSS N  D+++R LSLHDNKY RYF GH  RVV LS+    D FISGSL
Sbjct:    69 IRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSL 127

Query:   123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIF 167
             D+T+ LWD R+  CQGL+ +QG+P  ++D +GL+F                ++KGP   F
Sbjct:   128 DKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATF 187

Query:   168 SVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
              +  D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+  TLEASF
Sbjct:   188 KMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASF 247

Query:   227 SPEGMFVISGSGDGSVHAWSVRSGKEVA 254
             +P+  F++ GS DG +H W+  SG +VA
Sbjct:   248 TPDSQFIMIGSEDGKIHVWNGESGIKVA 275

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

MGI|MGI:1924555 Wdr82 "WD repeat domain containing 82" [Mus musculus (taxid:10090)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 114/268 (42%), Positives = 166/268 (61%)

Query:     5 QSEREDKVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL 62
             +S R  KV  E S++I        G  ++++SDD+SI LYD       +T+ SKKYGVDL
Sbjct:     9 RSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDL 68

Query:    63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
             + +T    TV+YSS N  D+++R LSLHDNKY RYF GH  RVV LS+    D FISGSL
Sbjct:    69 IRYTHAANTVVYSS-NKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSL 127

Query:   123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG---------------YEKGPLDIF 167
             D+T+ LWD R+  CQGL+ +QG+P  ++D +GL+F                ++KGP   F
Sbjct:   128 DKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATF 187

Query:   168 SVGGDIS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF 226
              +  D + +   +KFSNDG+L+L++T    I ++D+F+G ++ T+     S+  TLEASF
Sbjct:   188 KMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASF 247

Query:   227 SPEGMFVISGSGDGSVHAWSVRSGKEVA 254
             +P+  F++ GS DG +H W+  SG +VA
Sbjct:   248 TPDSQFIMIGSEDGKIHVWNGESGIKVA 275

GO:0000785 "chromatin" evidence=ISO

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO;IMP

GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZMV7	WDR82_CHICK	No assigned EC number	0.4078	0.9342	0.9073	yes	no
Q6GL39	WDR82_XENTR	No assigned EC number	0.3980	0.9342	0.9073	yes	no
Q6UXN9	WDR82_HUMAN	No assigned EC number	0.4013	0.9342	0.9073	yes	no
Q8BFQ4	WDR82_MOUSE	No assigned EC number	0.4013	0.9342	0.9073	yes	no
Q6NV31	WDR82_DANRE	No assigned EC number	0.4013	0.9342	0.9073	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036790001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (310 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014835001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (448 aa)			•						0.496
	GSVIVG00017915001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (459 aa)			•						0.493
	GSVIVG00038020001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (438 aa)			•						0.489
	GSVIVG00032589001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (331 aa)			•						0.489
	GSVIVG00027473001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (339 aa)			•						0.487
	GSVIVG00034167001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (405 aa)			•						0.485
	GSVIVG00014907001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (336 aa)			•						0.482
	GSVIVG00003115001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (352 aa)			•						0.480
	GSVIVG00026345001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (439 aa)			•						0.477
	GSVIVG00001955001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (312 aa)			•						0.476

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	304
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 71/278 (25%), Positives = 117/278 (42%), Gaps = 33/278 (11%)

Query: 29  YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88
            L T S D +I+++D+     L+T+      V  V  ++   T + S     D+++RL  
Sbjct: 23  LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-GTYLASG--SSDKTIRLWD 79

Query: 89  LHDNKYSRYFKGHHDRVVLLSLCSSKDCFI--SGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
           L   +  R   GH   V   S+  S D  I  S S D+T+ +WD    KC   LR     
Sbjct: 80  LETGECVRTLTGHTSYV--SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137

Query: 147 --------------AAAYDDQGLVFGYEKG-PLDIFSVGGDISDANVVKFSNDGRLMLLT 191
                         +++ D    ++    G  +   +  G   + N V FS DG  +L +
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSS 195

Query: 192 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251
           + +G I + D   G  L T        NS    +FSP+G  + SGS DG++  W +R+G+
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNS---VAFSPDGYLLASGSEDGTIRVWDLRTGE 252

Query: 252 EVAS-WMSFDTEPPV--IKWAPGSLMFVTGSSELSFWI 286
            V +          V  + W+P      +GS++ +  I
Sbjct: 253 CVQTLSG---HTNSVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 85.5 bits (212), Expect = 3e-19
 Identities = 61/220 (27%), Positives = 88/220 (40%), Gaps = 39/220 (17%)

Query: 29  YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS 88
            L ++S D++I+++DV    CL T+      V+ V F+   T V  SS    D +++L  
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS---QDGTIKLWD 163

Query: 89  LHDNKYSRYFKGHHDRVVLLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
           L   K      GH   V   S+  S D    +S S D T+ LWD    KC G LR     
Sbjct: 164 LRTGKCVATLTGHTGEV--NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG 221

Query: 147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 206
             +                             V FS DG L+   + +G I V D   G 
Sbjct: 222 VNS-----------------------------VAFSPDGYLLASGSEDGTIRVWDLRTGE 252

Query: 207 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246
            + T        NS    ++SP+G  + SGS DG++  W 
Sbjct: 253 CVQTL---SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 35/243 (14%)

Query: 49  CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLL 108
             +T+     GV  V F+     +   S    D ++++  L   +  R  KGH   V  +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGS---GDGTIKVWDLETGELLRTLKGHTGPVRDV 57

Query: 109 SLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS 168
           +  +      SGS D+T+ LWD    +C                             + +
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGEC-----------------------------VRT 88

Query: 169 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP 228
           + G  S  + V FS DGR++  ++ +  I V D   G  L+T        +     +FSP
Sbjct: 89  LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH---TDWVNSVAFSP 145

Query: 229 EGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPD 288
           +G FV S S DG++  W +R+GK VA+      E   + ++P     ++ SS+ +  + D
Sbjct: 146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205

Query: 289 LSK 291
           LS 
Sbjct: 206 LST 208

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 67.0 bits (162), Expect = 2e-12
 Identities = 66/267 (24%), Positives = 107/267 (40%), Gaps = 35/267 (13%)

Query: 28  IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87
           +    +S D +I+L+D+     L T+      V  + F   P   +  +    D ++RL 
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF--SPDGGLLIASGSSDGTIRLW 226

Query: 88  SLHDNKYSR-YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
            L   K  R    GH D VV  S         SGS D T+ LWD R+             
Sbjct: 227 DLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSL--------- 276

Query: 147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 206
                              + ++ G  S    V FS DG+L+   + +G + + D   G 
Sbjct: 277 -------------------LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317

Query: 207 LLSTYNVKPVSRNSTLEASFSPEGM-FVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPV 265
           LLS+  +K          SFSP+G   V  GS DG++  W +R+GK + +          
Sbjct: 318 LLSSLTLKG-HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LS 375

Query: 266 IKWAPGSLMFVTGSSELSFWIPDLSKL 292
           + ++P   +  +GS++ +  + DLS  
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDLSTG 402

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.7 bits (156), Expect = 1e-11
 Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 24/274 (8%)

Query: 29  YLVTASDDESIRLYDV-TAATCLKTINSKKYG-VDLVCFTSHPTTVIYSSKNGWDESLRL 86
            L++ S D +I+L+D+      +K++       V  +  +S     I  + +  D +++L
Sbjct: 79  LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138

Query: 87  LSL-HDNKYSRYFKGHHDRVVLLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQG 144
             L    K  R  +GH + V  L+         SGS LD T+ LWD R  K    L    
Sbjct: 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT 198

Query: 145 RP---------------AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLML 189
            P               + + D    ++    G L + S     SD+ V  FS DG L+ 
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL-LRSTLSGHSDSVVSSFSPDGSLLA 257

Query: 190 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS 249
             + +G I + D    +  S         +S L  +FSP+G  + SGS DG+V  W + +
Sbjct: 258 SGSSDGTIRLWDL--RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315

Query: 250 GKEVASWMSFDTEPPV--IKWAPGSLMFVTGSSE 281
           GK ++S      E PV  + ++P   + V+G S+
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.0 bits (149), Expect = 9e-11
 Identities = 55/248 (22%), Positives = 99/248 (39%), Gaps = 22/248 (8%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G+ + + S D +IRL+D++    L++  S      +  F+   + +   S    D ++RL
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSS---DGTIRL 267

Query: 87  LSLHDNKYS-RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG- 144
             L  +    R   GH   V+ ++         SGS D TV LWD    K    L ++G 
Sbjct: 268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH 327

Query: 145 --------------RPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLL 190
                            +   D G +  ++             S+   V FS DGR++  
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSS 387

Query: 191 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG 250
            + +G + + D   G+LL   +      +      FSP+G  + SGS D ++  W +++ 
Sbjct: 388 GSTDGTVRLWDLSTGSLLRNLDGHT---SRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444

Query: 251 KEVASWMS 258
            +  S+  
Sbjct: 445 LKSVSFSP 452

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 56/265 (21%), Positives = 96/265 (36%), Gaps = 24/265 (9%)

Query: 50  LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLS 109
            K +   + G  L   +        S           L    +  S   +GH D +  ++
Sbjct: 13  SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIA 72

Query: 110 LCSSKDCFISGSLDRTVLLWDQRAEKCQ---------------GLLRVQGRPAAA----Y 150
                +  +SGS D T+ LWD    +                  L    G          
Sbjct: 73  FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL 132

Query: 151 DDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME-GHIHVLDSFRGTLLS 209
           D    ++        I ++ G       + FS DG+L+   +   G I + D   G  LS
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192

Query: 210 TYNVKPVSRNSTLEASFSPEGMFVI-SGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKW 268
           T        +     +FSP+G  +I SGS DG++  W + +GK + S +S  ++  V  +
Sbjct: 193 TLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249

Query: 269 APGSLMFVTGSSELSFWIPDLSKLG 293
           +P   +  +GSS+ +  + DL    
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRSSS 274

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G ++ ++S D +I+L+D+    C+ T+      V+ V F+     ++ SS +G   +++L
Sbjct: 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG---TIKL 203

Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR 141
             L   K     +GH + V  ++         SGS D T+ +WD R  +C   L 
Sbjct: 204 WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 8/166 (4%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G  L + S D ++RL+D+     L ++  K +   +   +  P   +  S    D ++RL
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             L            H  V+ +S         SGS D TV LWD         L      
Sbjct: 356 WDL-RTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR 414

Query: 147 ----AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLM 188
                 + D + L  G     + ++ +   +     V FS DG+++
Sbjct: 415 VTSLDFSPDGKSLASGSSDNTIRLWDLKTSL---KSVSFSPDGKVL 457

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 91  DNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD 130
             +  +  KGH   V  ++         SGS D T+ LWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 98  FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD 130
            KGH   V  ++     +   SGS D TV +WD
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	304
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
PTZ00420	568	coronin; Provisional	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.98
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.98
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.98
KOG0267	825	consensus Microtubule severing protein katanin p80	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG1274	933	consensus WD40 repeat protein [General function pr	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG1273	405	consensus WD40 repeat protein [General function pr	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.94
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.91
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG0649	325	consensus WD40 repeat protein [General function pr	99.9
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.9
KOG1188	376	consensus WD40 repeat protein [General function pr	99.9
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.88
PRK11028	330	6-phosphogluconolactonase; Provisional	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.88
PRK01742	429	tolB translocation protein TolB; Provisional	99.88
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.87
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG4227	609	consensus WD40 repeat protein [General function pr	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
COG2319	466	FOG: WD40 repeat [General function prediction only	99.86
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.86
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
PRK03629	429	tolB translocation protein TolB; Provisional	99.86
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.85
KOG1188	376	consensus WD40 repeat protein [General function pr	99.85
KOG1963	792	consensus WD40 repeat protein [General function pr	99.85
PRK01742	429	tolB translocation protein TolB; Provisional	99.85
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.84
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.84
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.84
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.84
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
PRK04922	433	tolB translocation protein TolB; Provisional	99.83
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
PRK03629	429	tolB translocation protein TolB; Provisional	99.83
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.82
PRK05137	435	tolB translocation protein TolB; Provisional	99.82
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
PRK02889	427	tolB translocation protein TolB; Provisional	99.82
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
KOG1310	758	consensus WD40 repeat protein [General function pr	99.81
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.81
KOG2139	445	consensus WD40 repeat protein [General function pr	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
KOG2321	703	consensus WD40 repeat protein [General function pr	99.8
PRK04922	433	tolB translocation protein TolB; Provisional	99.8
KOG1963	792	consensus WD40 repeat protein [General function pr	99.8
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.78
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.78
PRK02889	427	tolB translocation protein TolB; Provisional	99.78
KOG1334	559	consensus WD40 repeat protein [General function pr	99.78
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.78
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.77
KOG1310	758	consensus WD40 repeat protein [General function pr	99.77
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.77
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
PRK05137	435	tolB translocation protein TolB; Provisional	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.76
KOG2139	445	consensus WD40 repeat protein [General function pr	99.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.75
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.75
PRK00178	430	tolB translocation protein TolB; Provisional	99.75
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.75
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.74
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.74
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.73
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.72
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.72
KOG2315	566	consensus Predicted translation initiation factor	99.72
PRK04792	448	tolB translocation protein TolB; Provisional	99.72
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.72
PRK04792	448	tolB translocation protein TolB; Provisional	99.71
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.7
PRK01029	428	tolB translocation protein TolB; Provisional	99.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.7
PRK00178	430	tolB translocation protein TolB; Provisional	99.69
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.69
KOG2314	698	consensus Translation initiation factor 3, subunit	99.68
KOG2321	703	consensus WD40 repeat protein [General function pr	99.66
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.66
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.65
KOG4547	541	consensus WD40 repeat-containing protein [General	99.65
KOG4547	541	consensus WD40 repeat-containing protein [General	99.63
PRK01029	428	tolB translocation protein TolB; Provisional	99.63
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.62
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.6
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.59
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.59
PRK04043	419	tolB translocation protein TolB; Provisional	99.58
KOG1334	559	consensus WD40 repeat protein [General function pr	99.58
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.57
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.54
PRK04043	419	tolB translocation protein TolB; Provisional	99.54
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.53
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.53
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.53
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.52
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.51
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.5
COG4946	668	Uncharacterized protein related to the periplasmic	99.5
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.5
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.5
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.49
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.47
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.45
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.45
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.43
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.4
COG4946	668	Uncharacterized protein related to the periplasmic	99.4
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.35
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.34
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.34
KOG2315	566	consensus Predicted translation initiation factor	99.33
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.33
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.33
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.31
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.3
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.28
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.28
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.28
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.27
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.27
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.25
KOG2695	425	consensus WD40 repeat protein [General function pr	99.24
KOG2314	698	consensus Translation initiation factor 3, subunit	99.22
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.22
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.22
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.22
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.18
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.17
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.16
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.16
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.13
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.11
KOG2695	425	consensus WD40 repeat protein [General function pr	99.11
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.09
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.09
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.08
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.07
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.05
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.04
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.04
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.03
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.03
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.03
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.02
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	99.02
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	99.01
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	99.01
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.99
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.98
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.95
PRK02888	635	nitrous-oxide reductase; Validated	98.95
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.95
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.95
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.91
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.91
PRK02888	635	nitrous-oxide reductase; Validated	98.87
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.83
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.83
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.83
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.8
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.8
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.8
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.79
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.75
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.68
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.67
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.67
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.63
COG3391	381	Uncharacterized conserved protein [Function unknow	98.61
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.6
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.56
COG3391	381	Uncharacterized conserved protein [Function unknow	98.56
KOG3621	726	consensus WD40 repeat-containing protein [General	98.56
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.54
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.53
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.51
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.48
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.46
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.45
KOG3621	726	consensus WD40 repeat-containing protein [General	98.44
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.41
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.41
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.4
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.37
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.35
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.28
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.25
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.22
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.19
PRK13616	591	lipoprotein LpqB; Provisional	98.13
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.07
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.06
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.05
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	98.05
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.03
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.03
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.01
PRK13616	591	lipoprotein LpqB; Provisional	98.01
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.99
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.98
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.95
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.95
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.95
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.93
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.92
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.82
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.81
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.81
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.8
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.79
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.79
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.78
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.75
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.73
KOG2395	644	consensus Protein involved in vacuole import and d	97.69
KOG2444	238	consensus WD40 repeat protein [General function pr	97.68
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.66
KOG2395	644	consensus Protein involved in vacuole import and d	97.66
PHA02713	557	hypothetical protein; Provisional	97.66
PHA02713	557	hypothetical protein; Provisional	97.65
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.55
PHA03098	534	kelch-like protein; Provisional	97.46
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.45
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.44
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.41
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.39
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.39
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.37
KOG2444	238	consensus WD40 repeat protein [General function pr	97.33
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.23
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.23
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.22
PHA02790	480	Kelch-like protein; Provisional	97.21
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.2
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.19
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.14
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.06
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.05
PRK10115	686	protease 2; Provisional	97.05
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.98
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.95
PHA03098	534	kelch-like protein; Provisional	96.86
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.85
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.8
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.76
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.74
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.63
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.54
COG5167	776	VID27 Protein involved in vacuole import and degra	96.46
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	96.41
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.39
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.37
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.37
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.3
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.19
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.17
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.07
PRK10115	686	protease 2; Provisional	96.05
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	96.02
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.0
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.97
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.97
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.91
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.87
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.87
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.77
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.73
COG5167	776	VID27 Protein involved in vacuole import and degra	95.67
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.51
PHA02790	480	Kelch-like protein; Provisional	95.37
KOG2247	615	consensus WD40 repeat-containing protein [General	95.28
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.23
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.2
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	95.2
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.15
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.08
KOG2247	615	consensus WD40 repeat-containing protein [General	95.05
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.03
COG4590	733	ABC-type uncharacterized transport system, permeas	94.77
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	94.73
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.69
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	94.65
PLN02193	470	nitrile-specifier protein	94.64
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.48
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.23
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.21
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.17
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.11
PRK13684	334	Ycf48-like protein; Provisional	94.06
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	94.0
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.99
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.64
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	93.55
PRK13684	334	Ycf48-like protein; Provisional	93.36
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.29
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.22
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.2
PLN02153	341	epithiospecifier protein	93.08
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	92.99
COG5276	370	Uncharacterized conserved protein [Function unknow	92.98
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.88
COG4590	733	ABC-type uncharacterized transport system, permeas	92.79
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.65
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.46
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.37
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.24
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.22
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	91.9
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	91.85
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	91.79
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	91.6
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.53
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.22
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.08
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	89.87
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	89.86
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.85
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	89.79
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.76
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	89.74
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	89.7
PF12768	281	Rax2: Cortical protein marker for cell polarity	89.46
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	89.34
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.3
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	88.68
PLN02153	341	epithiospecifier protein	88.62
PRK13615	557	lipoprotein LpqB; Provisional	88.25
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.23
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.12
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	88.06
PF14727	418	PHTB1_N: PTHB1 N-terminus	88.02

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-51  Score=306.80  Aligned_cols=273  Identities=24%  Similarity=0.402  Sum_probs=236.8

Q ss_pred             ccceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCce
Q 036585            8 REDKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   84 (304)
Q Consensus         8 ~~~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i   84 (304)
                      ..+...+.+|.+.   ++|+|+|.+|++|+.|.++|+||+.+..+..+.++|..-|.|++|+||++.|++|+.   ||+|
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~---dg~I  181 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK---DGSI  181 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc---CCeE
Confidence            3445567778775   578899999999999999999999999999999999999999999999999999999   9999


Q ss_pred             EEEEccCcee-eeecccccccEEEEEEcC-----CCCEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCCeE
Q 036585           85 RLLSLHDNKY-SRYFKGHHDRVVLLSLCS-----SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLV  156 (304)
Q Consensus        85 ~vwd~~~~~~-~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~  156 (304)
                      ++||..++++ ...+.+|...|++++|.|     ..++|++++.||.++|||+..++++..+..+..+  ++.+..++.+
T Consensus       182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli  261 (480)
T KOG0271|consen  182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI  261 (480)
T ss_pred             EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE
Confidence            9999998875 467899999999999985     5679999999999999999888776665433322  2233333322


Q ss_pred             E-------------------------------------------------------------------------------
Q 036585          157 F-------------------------------------------------------------------------------  157 (304)
Q Consensus       157 ~-------------------------------------------------------------------------------  157 (304)
                      +                                                                               
T Consensus       262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS  341 (480)
T KOG0271|consen  262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS  341 (480)
T ss_pred             EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence            2                                                                               


Q ss_pred             EecCCCeEEEEe----------cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc
Q 036585          158 GYEKGPLDIFSV----------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  227 (304)
Q Consensus       158 ~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s  227 (304)
                      +.++..+.+|+.          .+|+..|+.+.||||++++++++.|..|++||.++|+.+.++.   +|-..|+.++|+
T Consensus       342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR---GHv~~VYqvaws  418 (480)
T KOG0271|consen  342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR---GHVAAVYQVAWS  418 (480)
T ss_pred             ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh---hccceeEEEEec
Confidence            444555555542          2477889999999999999999999999999999999999999   899999999999


Q ss_pred             CCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585          228 PEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       228 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      .|.++|++|+.|.++++||+++.+....+++|...|.++.|+|||..+++|+.|  +++|.
T Consensus       419 aDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  419 ADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999999999999999999999  88884

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.4e-50  Score=301.35  Aligned_cols=250  Identities=21%  Similarity=0.297  Sum_probs=234.3

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccC--CCeEEEEecCCCCCceEEEEccCceeee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ..+.++.+++.|+|||.+|.++||+..+...++++.+|...+.++.|+|.  +..+++++.   ||++++|++.+..++.
T Consensus       179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~---Dgtvklw~~~~e~~l~  255 (459)
T KOG0272|consen  179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASA---DGTVKLWKLSQETPLQ  255 (459)
T ss_pred             eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeecc---CCceeeeccCCCcchh
Confidence            45788999999999999999999999999999999999999999999997  568999998   9999999999999999


Q ss_pred             ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA  176 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  176 (304)
                      .+.+|...|..++|+|+|++|++++.|.+-++||++++.......                             +|...|
T Consensus       256 ~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-----------------------------GHs~~v  306 (459)
T KOG0272|consen  256 DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-----------------------------GHSKGV  306 (459)
T ss_pred             hhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-----------------------------cccccc
Confidence            999999999999999999999999999999999999987765543                             788999


Q ss_pred             eEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585          177 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       177 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      .+++|.|||.++++|+.|..-+|||++++.++..+.   +|..+|.+++|+|+|..||+|+.|++++|||++..+++..+
T Consensus       307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~---gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i  383 (459)
T KOG0272|consen  307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA---GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI  383 (459)
T ss_pred             ceeEecCCCceeeccCccchhheeecccCcEEEEec---ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec
Confidence            999999999999999999999999999999999999   79999999999999999999999999999999999999999


Q ss_pred             eccCCCCceEEeCC-CCcEEEEecCc--eEEeccC-CccccccccCCCCCC
Q 036585          257 MSFDTEPPVIKWAP-GSLMFVTGSSE--LSFWIPD-LSKLGAYVGRNRGCM  303 (304)
Q Consensus       257 ~~~~~~i~~~~~~~-~~~~l~s~~~d--~~iw~~~-~~~~~~~~~~~~g~~  303 (304)
                      ++|..-|+.++|+| .|.+|+|++.|  ++||... -..++.+.||+..++
T Consensus       384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~  434 (459)
T KOG0272|consen  384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI  434 (459)
T ss_pred             ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE
Confidence            99999999999999 78999999999  9999875 467889999986543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-48  Score=293.42  Aligned_cols=247  Identities=23%  Similarity=0.313  Sum_probs=231.1

Q ss_pred             cccccceeeeeccee---eEeeccc--CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCC
Q 036585            5 QSEREDKVSLELSEE---ILQSMEV--GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   79 (304)
Q Consensus         5 ~~~~~~~~~~~~~~~---~i~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   79 (304)
                      .+.....+.+.+|..   .+.|.|.  +..|||++.||++++|++.+..++..+.+|...|..++|+|+|++|++++.  
T Consensus       204 ~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf--  281 (459)
T KOG0272|consen  204 VPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASF--  281 (459)
T ss_pred             cCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccc--
Confidence            344567788888865   4678887  679999999999999999999999999999999999999999999999999  


Q ss_pred             CCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEe
Q 036585           80 WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGY  159 (304)
Q Consensus        80 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (304)
                       |.+-++||+++++.+....+|...|.+++|+|||.++++|+.|..-+|||+++++++..+.                  
T Consensus       282 -D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~------------------  342 (459)
T KOG0272|consen  282 -DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA------------------  342 (459)
T ss_pred             -ccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec------------------
Confidence             9999999999999999899999999999999999999999999999999999999877665                  


Q ss_pred             cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecC
Q 036585          160 EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSG  238 (304)
Q Consensus       160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~  238 (304)
                                 +|..+|..++|+|+|..|++|+.|++++|||++..+.+.++.   .|.+-|+.++|+| .|.+|++++.
T Consensus       343 -----------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip---AH~nlVS~Vk~~p~~g~fL~Tasy  408 (459)
T KOG0272|consen  343 -----------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP---AHSNLVSQVKYSPQEGYFLVTASY  408 (459)
T ss_pred             -----------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc---cccchhhheEecccCCeEEEEccc
Confidence                       788899999999999999999999999999999988877777   7999999999999 7889999999


Q ss_pred             CCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585          239 DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       239 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      |++++||...+..+++.+.+|.+.|.++..+||+.++++++.|  +++|.
T Consensus       409 D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  409 DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999999999999999999999999  99995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6e-46  Score=261.76  Aligned_cols=268  Identities=19%  Similarity=0.333  Sum_probs=237.0

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce--eeeeccccccc
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YSRYFKGHHDR  104 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~  104 (304)
                      .-+|++++.|-+||+|...+|.+..+++.....|+.+...|+++.|++++    ...|++||+++++  ++.++.+|+..
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~----~qhvRlyD~~S~np~Pv~t~e~h~kN   85 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG----NQHVRLYDLNSNNPNPVATFEGHTKN   85 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc----CCeeEEEEccCCCCCceeEEeccCCc
Confidence            35899999999999999999999999998889999999999999999998    7899999999865  68899999999


Q ss_pred             EEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc-ceeEecCC--CeEEEecCCCeEEEEecCC---------
Q 036585          105 VVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQ--GLVFGYEKGPLDIFSVGGD---------  172 (304)
Q Consensus       105 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------  172 (304)
                      |+++.|..+|+.+++|+.||+++|||++...+.+.+..... ..+...|+  .++.+..++.+.+|++..+         
T Consensus        86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe  165 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE  165 (311)
T ss_pred             eEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence            99999999999999999999999999999888887776533 34556655  3677888999999999865         


Q ss_pred             -CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCc------eeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEE
Q 036585          173 -ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT------LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAW  245 (304)
Q Consensus       173 -~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~  245 (304)
                       ...|.++...|||..++.+...|..++|++-+.+      ++..++   .|.+.+..+.+|||+++||+++.|.+++||
T Consensus       166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~---ah~~~il~C~lSPd~k~lat~ssdktv~iw  242 (311)
T KOG0315|consen  166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ---AHNGHILRCLLSPDVKYLATCSSDKTVKIW  242 (311)
T ss_pred             CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee---cccceEEEEEECCCCcEEEeecCCceEEEE
Confidence             3578999999999999999999999999987643      333344   688999999999999999999999999999


Q ss_pred             ecCCC-ceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc-cccccccCCCC
Q 036585          246 SVRSG-KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS-KLGAYVGRNRG  301 (304)
Q Consensus       246 d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~-~~~~~~~~~~g  301 (304)
                      +..+. +.-..+.+|...++..+||.||+||++|+.|  .++|++... +++++.+|+++
T Consensus       243 n~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~  302 (311)
T KOG0315|consen  243 NTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA  302 (311)
T ss_pred             ecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence            99887 6667779999999999999999999999999  999999764 57899998875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.9e-44  Score=289.86  Aligned_cols=236  Identities=19%  Similarity=0.319  Sum_probs=219.6

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCc-------------------------------ceeeeecccccceeEEEEcc
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAA-------------------------------TCLKTINSKKYGVDLVCFTS   67 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~-------------------------------~~~~~~~~~~~~v~~~~~~~   67 (304)
                      .+..++.++.+||.|-.|..|++|.+...                               ....++.+|.++|....|+|
T Consensus       382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP  461 (707)
T KOG0263|consen  382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP  461 (707)
T ss_pred             eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence            34567888999999999999999998631                               12245779999999999999


Q ss_pred             CCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccce
Q 036585           68 HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA  147 (304)
Q Consensus        68 ~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  147 (304)
                      +.++|++++.   |+++|+|.+.+...+..+++|..||+.+.|+|.|-+|++++.|++.++|......+.+.+.      
T Consensus       462 d~rfLlScSE---D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa------  532 (707)
T KOG0263|consen  462 DRRFLLSCSE---DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA------  532 (707)
T ss_pred             cccceeeccC---CcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc------
Confidence            9999999999   9999999999999999999999999999999999999999999999999999888777765      


Q ss_pred             eEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc
Q 036585          148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  227 (304)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s  227 (304)
                                             +|.+.|.|+.|+|+..++++|+.|.++++||..+|..++.|.   +|.++|++++||
T Consensus       533 -----------------------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~---GH~~~V~al~~S  586 (707)
T KOG0263|consen  533 -----------------------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT---GHKGPVTALAFS  586 (707)
T ss_pred             -----------------------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec---CCCCceEEEEEc
Confidence                                   788999999999999999999999999999999999999998   899999999999


Q ss_pred             CCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          228 PEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       228 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      |+|++|++|+.||.|.+||+.+++++..+.+|.+.|.++.|+.+|..||+|+.|  +++||+..
T Consensus       587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            999999999999999999999999999999999999999999999999999999  99998753

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.8e-42  Score=247.86  Aligned_cols=271  Identities=18%  Similarity=0.258  Sum_probs=239.9

Q ss_pred             eeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           11 KVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        11 ~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ...+++|.+-   +.|.+|.++|+++|.||.+.|||.-+....+.+.....-|...+|+|.++.+++|+-   |+...||
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGL---dN~Csiy  124 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGL---DNKCSIY  124 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCc---CceeEEE
Confidence            4566777654   678899999999999999999999998888888888889999999999999999998   9999999


Q ss_pred             EccCc------eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecccee--EecC---CCeE
Q 036585           88 SLHDN------KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA--AYDD---QGLV  156 (304)
Q Consensus        88 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~---~~~~  156 (304)
                      ++.+.      +..+.+.+|++.+.|+.|.+|+ .|++++.|.+..+||+++++....+..+...++  .+.|   +.++
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence            99865      3456788999999999999855 799999999999999999999999887655543  3444   3455


Q ss_pred             EEecCCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc
Q 036585          157 FGYEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  227 (304)
Q Consensus       157 ~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s  227 (304)
                      .+.-++..++|+++         +|++.|++++|.|+|.-|++|+.|++.++||++..+.+..+... ....+|++++||
T Consensus       204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-~~~~gitSv~FS  282 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-SIICGITSVAFS  282 (343)
T ss_pred             ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-cccCCceeEEEc
Confidence            67778888888764         68999999999999999999999999999999999999888743 456789999999


Q ss_pred             CCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585          228 PEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       228 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      ..|++|++|..|..+.+||.-.++.+..+.+|...|+++..+|||..+++|+.|  ++||.
T Consensus       283 ~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  283 KSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999999999999999999999999999999999999999999999999  99994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-43  Score=249.91  Aligned_cols=241  Identities=19%  Similarity=0.291  Sum_probs=207.5

Q ss_pred             eeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           11 KVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        11 ~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ...+++|...   +.++++|++.++++.|+++|+||+.+++..+.+.+|...|.+++|++|.+.+++|+.   |.+|++|
T Consensus        56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr---DkTiklw  132 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR---DKTIKLW  132 (315)
T ss_pred             eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCC---cceeeee
Confidence            4567777766   567899999999999999999999999999999999999999999999999999999   9999999


Q ss_pred             EccCceeeeeccc-ccccEEEEEEcCC--CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585           88 SLHDNKYSRYFKG-HHDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL  164 (304)
Q Consensus        88 d~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (304)
                      +............ +.+.|.|+.|+|+  ..++++++.|+++++||+++.+....+.                       
T Consensus       133 nt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-----------------------  189 (315)
T KOG0279|consen  133 NTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-----------------------  189 (315)
T ss_pred             eecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-----------------------
Confidence            9876544433332 2789999999997  6799999999999999999887766554                       


Q ss_pred             EEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEE
Q 036585          165 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHA  244 (304)
Q Consensus       165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v  244 (304)
                            +|+..++.+++||||.+.++|+.||.+.+||++.++.+..+.    +...|.+++|+|+.-.|+.+. +..|+|
T Consensus       190 ------gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~----a~~~v~sl~fspnrywL~~at-~~sIkI  258 (315)
T KOG0279|consen  190 ------GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE----AFDIVNSLCFSPNRYWLCAAT-ATSIKI  258 (315)
T ss_pred             ------cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc----CCCeEeeEEecCCceeEeecc-CCceEE
Confidence                  688899999999999999999999999999999999988876    889999999999987776665 556999


Q ss_pred             EecCCCceeeeeec----c-----CCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          245 WSVRSGKEVASWMS----F-----DTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       245 ~d~~~~~~~~~~~~----~-----~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      ||+.++..+..+..    .     .....+++|++||..|++|-.|  +++|.+.
T Consensus       259 wdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  259 WDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            99999888776632    1     2224678999999999999988  9999763

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-43  Score=250.37  Aligned_cols=251  Identities=20%  Similarity=0.294  Sum_probs=220.6

Q ss_pred             ccccceeeeecceeeEeecc----cCcEEEEeeCCCeEEEEecC-----CcceeeeecccccceeEEEEccCCCeEEEEe
Q 036585            6 SEREDKVSLELSEEILQSME----VGIYLVTASDDESIRLYDVT-----AATCLKTINSKKYGVDLVCFTSHPTTVIYSS   76 (304)
Q Consensus         6 ~~~~~~~~~~~~~~~i~~~~----~~~~l~~~~~d~~i~vw~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   76 (304)
                      ++......+++|.+-|....    +-+.+++++.|.++.+|++.     .|.+++.+.+|...|..+..++++++.++++
T Consensus         3 e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen    3 EQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             hhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence            44455667888887765443    36789999999999999876     4677899999999999999999999999999


Q ss_pred             cCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeE
Q 036585           77 KNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV  156 (304)
Q Consensus        77 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (304)
                      .   |+.+++||+.+++..+.|.+|...|.+++|+||.+.+++|+.|.+|++|++.......... .             
T Consensus        83 w---D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~-~-------------  145 (315)
T KOG0279|consen   83 W---DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE-D-------------  145 (315)
T ss_pred             c---cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec-C-------------
Confidence            8   9999999999999999999999999999999999999999999999999987544322221 1             


Q ss_pred             EEecCCCeEEEEecCCCCCceEEEEecC--CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEE
Q 036585          157 FGYEKGPLDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  234 (304)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  234 (304)
                                    .+..-|+++.|+|+  ..++++++.|+++++||+++.+....+.   +|.+.++.+++||||..++
T Consensus       146 --------------~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~---gh~~~v~t~~vSpDGslca  208 (315)
T KOG0279|consen  146 --------------SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI---GHSGYVNTVTVSPDGSLCA  208 (315)
T ss_pred             --------------CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc---cccccEEEEEECCCCCEEe
Confidence                          12568999999998  7899999999999999999999888888   7999999999999999999


Q ss_pred             EecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585          235 SGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSK  291 (304)
Q Consensus       235 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~  291 (304)
                      +|+.||.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+... |+||+.+.+.
T Consensus       209 sGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~  265 (315)
T KOG0279|consen  209 SGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA  265 (315)
T ss_pred             cCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchh
Confidence            99999999999999999988774 88899999999999999888877 9999998765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-43  Score=264.06  Aligned_cols=250  Identities=25%  Similarity=0.394  Sum_probs=207.7

Q ss_pred             eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEE
Q 036585           49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLL  128 (304)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  128 (304)
                      +-..+.+|.++|.|+.|+|+++.|++|+.   |.++++||+.+..+..+.++|...|.|++|+|||+.|++|+.||.|++
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsG---D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l  183 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSG---DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL  183 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCC---CceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence            34567899999999999999999999998   999999999999999999999999999999999999999999999999


Q ss_pred             EeCCcceeec-eEEEeccc--eeEecCC-----C--eEEEecCCCeEEEEe---------cCCCCCceEEEEecCCcEEE
Q 036585          129 WDQRAEKCQG-LLRVQGRP--AAAYDDQ-----G--LVFGYEKGPLDIFSV---------GGDISDANVVKFSNDGRLML  189 (304)
Q Consensus       129 wd~~~~~~~~-~~~~~~~~--~~~~~~~-----~--~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~  189 (304)
                      ||..++++.. .+..+...  .++|.|-     .  +.....++.+++|++         .+|+.+|+|+.|--+| +++
T Consensus       184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liy  262 (480)
T KOG0271|consen  184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIY  262 (480)
T ss_pred             ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEE
Confidence            9999887654 33333322  3344332     2  223445777777765         4699999999997555 689


Q ss_pred             EeeCCCeEEEEEcCCCceeEEEE---------------------------------------------------------
Q 036585          190 LTTMEGHIHVLDSFRGTLLSTYN---------------------------------------------------------  212 (304)
Q Consensus       190 ~~~~dg~i~~~d~~~~~~~~~~~---------------------------------------------------------  212 (304)
                      +|+.|++|++|+...|...+.+.                                                         
T Consensus       263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg  342 (480)
T KOG0271|consen  263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG  342 (480)
T ss_pred             ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence            99999999999866543322211                                                         


Q ss_pred             -------------------eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCc
Q 036585          213 -------------------VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL  273 (304)
Q Consensus       213 -------------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  273 (304)
                                         ...+|..-|+.+.||||++++|+++-|.+|++||.++|+.+.++++|-++|+.++|+.|.+
T Consensus       343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR  422 (480)
T KOG0271|consen  343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR  422 (480)
T ss_pred             cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence                               0124566788899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCc--eEEeccCCcccc-ccccCCCCC
Q 036585          274 MFVTGSSE--LSFWIPDLSKLG-AYVGRNRGC  302 (304)
Q Consensus       274 ~l~s~~~d--~~iw~~~~~~~~-~~~~~~~g~  302 (304)
                      +|++|+.|  +++|++..+++. .+.||.+.+
T Consensus       423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEV  454 (480)
T KOG0271|consen  423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEV  454 (480)
T ss_pred             EEEEcCCCceEEEEEeeeeeecccCCCCCceE
Confidence            99999999  999999998874 678787764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-40  Score=242.59  Aligned_cols=279  Identities=45%  Similarity=0.763  Sum_probs=251.9

Q ss_pred             eecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce
Q 036585           14 LELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   93 (304)
Q Consensus        14 ~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~   93 (304)
                      ..++...+.++.+|.++++++.|.++++||..+++++.++..++.++..++|......++.++. ..|.+|+..++.+++
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt-k~d~tIryLsl~dNk   91 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST-KEDDTIRYLSLHDNK   91 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC-CCCCceEEEEeecCc
Confidence            4566778999999999999999999999999999999999999999999999998888888876 349999999999999


Q ss_pred             eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecC--CCeEEEEecC
Q 036585           94 YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEK--GPLDIFSVGG  171 (304)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  171 (304)
                      .++.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+.....++.+++|.|.++....  +.+++++++.
T Consensus        92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen   92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecc
Confidence            99999999999999999998899999999999999999999999999999999999999998875543  3577777653


Q ss_pred             --------------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec
Q 036585          172 --------------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       172 --------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                                    .....+.+.|||||++|+.++..+.+++.|.-+|....++...+....--...+|+||++++++|+
T Consensus       172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs  251 (311)
T KOG1446|consen  172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS  251 (311)
T ss_pred             cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec
Confidence                          356788999999999999999999999999999999999987655544446789999999999999


Q ss_pred             CCCcEEEEecCCCceeeeeec-cCCCCceEEeCCCCcEEEEecCceEEeccCCcccc
Q 036585          238 GDGSVHAWSVRSGKEVASWMS-FDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLG  293 (304)
Q Consensus       238 ~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~~~  293 (304)
                      .||+|++|++++++.+..+.+ +.+++.++.|+|.-.++++++..+.+|.++...+.
T Consensus       252 ~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~~~  308 (311)
T KOG1446|consen  252 DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDALP  308 (311)
T ss_pred             CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEeccccccC
Confidence            999999999999999999988 68999999999999999999999999998766543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-40  Score=246.89  Aligned_cols=271  Identities=17%  Similarity=0.261  Sum_probs=240.6

Q ss_pred             ceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           10 DKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        10 ~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      +.+.+.+|...   +-+.|+-..+++++.|++|++||..++++...+++|...+..++|+..|+++++++.   |-.+++
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs---Dl~~~L  176 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS---DLSAKL  176 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC---ccchhh
Confidence            34445555544   456788889999999999999999999999999999999999999999999999998   888999


Q ss_pred             EEccC-ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecCCCeEEEe--cC
Q 036585           87 LSLHD-NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVFGY--EK  161 (304)
Q Consensus        87 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~  161 (304)
                      ||..+ .++++.+.+|...|.++.|-|.|.++++++.|.+|+.|++.++-++..+..+..  ..+....+|.+++.  .+
T Consensus       177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d  256 (406)
T KOG0295|consen  177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND  256 (406)
T ss_pred             eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence            99987 567888889999999999999999999999999999999999999998876544  35666778877654  45


Q ss_pred             CCeEEEEec---------CCCCCceEEEEecC---------------CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCC
Q 036585          162 GPLDIFSVG---------GDISDANVVKFSND---------------GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  217 (304)
Q Consensus       162 ~~~~~~~~~---------~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  217 (304)
                      ..+.+|.+.         .|+-+|.+++|-|.               ++++.+++.|++|++||+.++.++.++.   +|
T Consensus       257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~---gh  333 (406)
T KOG0295|consen  257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV---GH  333 (406)
T ss_pred             ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe---cc
Confidence            677788654         47888999999762               3589999999999999999999999999   89


Q ss_pred             CCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585          218 RNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       218 ~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      .+.|..++|+|.|+||+++..|+++++||+++.++...+..|..-++++.|+.+..++++|+-|  +++|.
T Consensus       334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            9999999999999999999999999999999999999999999999999999999999999999  88885

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2e-39  Score=250.92  Aligned_cols=279  Identities=17%  Similarity=0.275  Sum_probs=215.5

Q ss_pred             ccccceeeeeccee---eEeecccCcEEEEeeCCCeEEEEecCCcceeeeec---ccccceeEEEEccCCCeEEEEecCC
Q 036585            6 SEREDKVSLELSEE---ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHPTTVIYSSKNG   79 (304)
Q Consensus         6 ~~~~~~~~~~~~~~---~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~   79 (304)
                      +..+-..+++.|..   .++++|||.++|+++.||.+.+||-.+++.+..+.   +|++.|.+++|+||++.+++++.  
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa--  255 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA--  255 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC--
Confidence            33444455555654   46789999999999999999999999999999998   89999999999999999999999  


Q ss_pred             CCCceEEEEccCceeeee-------------------------------------------cccccccEEEEEEcCCCCE
Q 036585           80 WDESLRLLSLHDNKYSRY-------------------------------------------FKGHHDRVVLLSLCSSKDC  116 (304)
Q Consensus        80 ~d~~i~vwd~~~~~~~~~-------------------------------------------~~~~~~~v~~~~~~~~~~~  116 (304)
                       |.+++|||+.+.+.+++                                           +.+|...|+++..+|++++
T Consensus       256 -Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~  334 (603)
T KOG0318|consen  256 -DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT  334 (603)
T ss_pred             -CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence             99999999987654332                                           3689999999999999999


Q ss_pred             EEEcccCCeEEEEeCCcceeeceE-----------EEec-cc---------------------------------eeEec
Q 036585          117 FISGSLDRTVLLWDQRAEKCQGLL-----------RVQG-RP---------------------------------AAAYD  151 (304)
Q Consensus       117 l~~~~~dg~i~iwd~~~~~~~~~~-----------~~~~-~~---------------------------------~~~~~  151 (304)
                      |++|+.||.|.-|+..++..-+..           .... ..                                 .++..
T Consensus       335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~  414 (603)
T KOG0318|consen  335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL  414 (603)
T ss_pred             EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence            999999999999998876544321           0000 00                                 01111


Q ss_pred             CCC-eEEEecCCCeEEEE-ec-----CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEE
Q 036585          152 DQG-LVFGYEKGPLDIFS-VG-----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  224 (304)
Q Consensus       152 ~~~-~~~~~~~~~~~~~~-~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~  224 (304)
                      +++ .++..-.+.+.+.. ..     .-.....+++++|+++.+++|+.||.|++|.+..+......... .|.++++++
T Consensus       415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~v  493 (603)
T KOG0318|consen  415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL-EHRAAITDV  493 (603)
T ss_pred             CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee-cccCCceEE
Confidence            111 11111112222221 11     11235678999999999999999999999999876654432222 589999999


Q ss_pred             EEcCCCcEEEEecCCCcEEEEecCCCce-eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          225 SFSPEGMFVISGSGDGSVHAWSVRSGKE-VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      +||||+.|||++...+.+.+||+.+.+. ...+..|.+.|.+++|+|++.++|+|+-|  +.||..+
T Consensus       494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  494 AYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             EECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence            9999999999999999999999988776 34456699999999999999999999999  7777764

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.9e-42  Score=257.15  Aligned_cols=242  Identities=21%  Similarity=0.386  Sum_probs=217.8

Q ss_pred             eecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce
Q 036585           14 LELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   93 (304)
Q Consensus        14 ~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~   93 (304)
                      .+.....+.|.|+|+.|++|+..|.+.+|+..+-.....++.|..+|.++.|++++.++++|..   +|.|++|+..-..
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~---gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDK---GGMIKYWQPNMNN  171 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCC---CceEEecccchhh
Confidence            3445667999999999999999999999998766666667899999999999999999999998   9999999986543


Q ss_pred             eeeeccccc-ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585           94 YSRYFKGHH-DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD  172 (304)
Q Consensus        94 ~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (304)
                       ++.++.|. ..|.+++|+|+...|++++.||+|+|||....+....+.                             +|
T Consensus       172 -Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-----------------------------GH  221 (464)
T KOG0284|consen  172 -VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-----------------------------GH  221 (464)
T ss_pred             -hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-----------------------------cC
Confidence             45555554 899999999999999999999999999999888777664                             67


Q ss_pred             CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585          173 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  252 (304)
                      .-.|.+++|+|...++++++.|..|++||.++++++.++.   .|+..|..+.|+|++++|++++.|..++++|+++.+.
T Consensus       222 gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh---~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE  298 (464)
T KOG0284|consen  222 GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH---GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE  298 (464)
T ss_pred             CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh---hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence            7899999999999999999999999999999999999998   7999999999999999999999999999999999999


Q ss_pred             eeeeeccCCCCceEEeCCC-CcEEEEecCc--eEEeccCCcc
Q 036585          253 VASWMSFDTEPPVIKWAPG-SLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       253 ~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      +..+++|...++++.|+|- ..+|.+|+.|  +..|.+..++
T Consensus       299 l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~  340 (464)
T KOG0284|consen  299 LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE  340 (464)
T ss_pred             HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence            9999999999999999994 5688889999  8889888544

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.9e-40  Score=249.93  Aligned_cols=238  Identities=18%  Similarity=0.298  Sum_probs=218.4

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      .+.|..+|..||+|+.||.+|+|+. ++.++.++..|+++|.++.|+..|.+|++++.   |+++.+||..+++..+.+.
T Consensus       240 ~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~v---D~ttilwd~~~g~~~q~f~  315 (524)
T KOG0273|consen  240 SLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGV---DGTTILWDAHTGTVKQQFE  315 (524)
T ss_pred             eEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccC---CccEEEEeccCceEEEeee
Confidence            4778889999999999999999995 58889999999999999999999999999999   9999999999999999999


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV  179 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  179 (304)
                      .|..+-..+.|-.+ ..|++++.|+.|+++.+....+...+.                             +|.+.|.++
T Consensus       316 ~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~-----------------------------GH~g~V~al  365 (524)
T KOG0273|consen  316 FHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFI-----------------------------GHHGEVNAL  365 (524)
T ss_pred             eccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeee-----------------------------cccCceEEE
Confidence            89988788899754 479999999999999998888777765                             688999999


Q ss_pred             EEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC---------cEEEEecCCCcEEEEecCCC
Q 036585          180 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG---------MFVISGSGDGSVHAWSVRSG  250 (304)
Q Consensus       180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~dg~i~v~d~~~~  250 (304)
                      .|+|.|.+|++++.|+++++|.+........+.   .|...|..+.|+|.|         ..+++++.|++|++||+..+
T Consensus       366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~---~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g  442 (524)
T KOG0273|consen  366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ---AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG  442 (524)
T ss_pred             EECCCCceEEEecCCCeeEeeecCCCcchhhhh---hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC
Confidence            999999999999999999999998888888888   788999999999965         47899999999999999999


Q ss_pred             ceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccccc
Q 036585          251 KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLGA  294 (304)
Q Consensus       251 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~~  294 (304)
                      .++..+..|..+|.+++|+|+|+++|+|+.|  +.||.....++..
T Consensus       443 v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~  488 (524)
T KOG0273|consen  443 VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK  488 (524)
T ss_pred             ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence            9999999999999999999999999999999  8999988776643

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.7e-39  Score=266.99  Aligned_cols=245  Identities=27%  Similarity=0.444  Sum_probs=218.4

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecCCcc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc-cCceeeee
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL-HDNKYSRY   97 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~-~~~~~~~~   97 (304)
                      +.++++|+++++++.|+.+++|+..+.+  ..+.+.+|...|..++|+|+++++++++.   |++|++||+ ..+..+++
T Consensus       165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~---D~tiriwd~~~~~~~~~~  241 (456)
T KOG0266|consen  165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD---DKTLRIWDLKDDGRNLKT  241 (456)
T ss_pred             EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC---CceEEEeeccCCCeEEEE
Confidence            5679999999999999999999998777  77888899999999999999999999999   999999999 55688999


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      +++|...|++++|+|+++++++|+.|++|++||++++++...+.                             +|...|+
T Consensus       242 l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-----------------------------~hs~~is  292 (456)
T KOG0266|consen  242 LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-----------------------------GHSDGIS  292 (456)
T ss_pred             ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-----------------------------ccCCceE
Confidence            99999999999999999999999999999999999988877775                             6788999


Q ss_pred             EEEEecCCcEEEEeeCCCeEEEEEcCCCc--eeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeee
Q 036585          178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS  255 (304)
Q Consensus       178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~  255 (304)
                      +++|++++.+|++++.|+.|++||+.++.  +...+....... ++++++|+|++.++++++.|+.+++||+..++.+..
T Consensus       293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~  371 (456)
T KOG0266|consen  293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT  371 (456)
T ss_pred             EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence            99999999999999999999999999998  456665333333 699999999999999999999999999999999999


Q ss_pred             eeccCCCC---ceEEeCCCCcEEEEecCc--eEEeccC-CccccccccC
Q 036585          256 WMSFDTEP---PVIKWAPGSLMFVTGSSE--LSFWIPD-LSKLGAYVGR  298 (304)
Q Consensus       256 ~~~~~~~i---~~~~~~~~~~~l~s~~~d--~~iw~~~-~~~~~~~~~~  298 (304)
                      +.+|...+   .+...++.+.++++|+.|  +.+|+.. ...+..+.+|
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence            98888753   344457799999999999  9999997 5556677776

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.1e-40  Score=266.70  Aligned_cols=205  Identities=26%  Similarity=0.363  Sum_probs=193.8

Q ss_pred             ceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           10 DKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        10 ~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      ...++-+|.+.   .+++|+.++|+++|.|+++|+|.+.+...+-.+++|..+|..+.|+|.|-++++++.   |++.++
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~---D~tArL  519 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH---DQTARL  519 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC---Cceeee
Confidence            34447778776   578999999999999999999999999999999999999999999999999999988   999999


Q ss_pred             EEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585           87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI  166 (304)
Q Consensus        87 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (304)
                      |......+.+.+.+|-..|.|+.|+|+..|+++|+.|.++++||+.++..++.|.                         
T Consensus       520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-------------------------  574 (707)
T KOG0263|consen  520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-------------------------  574 (707)
T ss_pred             eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-------------------------
Confidence            9999999999999999999999999999999999999999999999999887775                         


Q ss_pred             EEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEe
Q 036585          167 FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS  246 (304)
Q Consensus       167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d  246 (304)
                          +|.++|.+++|||+|++|++|+.||.|.+||+.+++.+..+.   +|.+.|.++.||.+|..||+|+.|++|++||
T Consensus       575 ----GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~---~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD  647 (707)
T KOG0263|consen  575 ----GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK---GHTGTIYSLSFSRDGNVLASGGADNSVRLWD  647 (707)
T ss_pred             ----CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh---cccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence                799999999999999999999999999999999999999998   6899999999999999999999999999999


Q ss_pred             cCC
Q 036585          247 VRS  249 (304)
Q Consensus       247 ~~~  249 (304)
                      +..
T Consensus       648 ~~~  650 (707)
T KOG0263|consen  648 LTK  650 (707)
T ss_pred             chh
Confidence            864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.5e-39  Score=226.03  Aligned_cols=272  Identities=22%  Similarity=0.356  Sum_probs=232.2

Q ss_pred             eeeeeccee---eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           11 KVSLELSEE---ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        11 ~~~~~~~~~---~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ...+..+++   ++++.-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.|...+++++.   |..+.+|
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg---Dk~v~vw   86 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG---DKAVQVW   86 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC---CceEEEE
Confidence            344555554   4667788999999999999999999999999999999999999999999999999998   9999999


Q ss_pred             EccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee--eceEEE--eccceeEecCCCeEEEecCCC
Q 036585           88 SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC--QGLLRV--QGRPAAAYDDQGLVFGYEKGP  163 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~  163 (304)
                      |+++|+..+.+.+|.+.|..++|+.+...+++|+.|..+++||-++...  ++.+..  .+...+.......+.+..++.
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGt  166 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGT  166 (307)
T ss_pred             EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCc
Confidence            9999999999999999999999999999999999999999999987654  334432  333455666777888899999


Q ss_pred             eEEEEecCC-------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585          164 LDIFSVGGD-------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       164 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                      ++.|++...       ..+|+++.|+++++..++++.|+++++.|-.+|+.+..+..+.. ...-...+++....++++|
T Consensus       167 vRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn-~eykldc~l~qsdthV~sg  245 (307)
T KOG0316|consen  167 VRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN-MEYKLDCCLNQSDTHVFSG  245 (307)
T ss_pred             EEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc-ceeeeeeeecccceeEEec
Confidence            999998743       47899999999999999999999999999999999999984332 2234456788888899999


Q ss_pred             cCCCcEEEEecCCCceeeeeeccCCC-CceEEeCCCCcEEEEecCc-eEEec
Q 036585          237 SGDGSVHAWSVRSGKEVASWMSFDTE-PPVIKWAPGSLMFVTGSSE-LSFWI  286 (304)
Q Consensus       237 ~~dg~i~v~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~s~~~d-~~iw~  286 (304)
                      ++||.|++||+.+...+..+..+... +.++.++|.-.-|+++... ...|.
T Consensus       246 SEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~  297 (307)
T KOG0316|consen  246 SEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY  297 (307)
T ss_pred             cCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence            99999999999999999999888777 8999999987766666655 55553

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.4e-40  Score=249.88  Aligned_cols=238  Identities=22%  Similarity=0.381  Sum_probs=213.0

Q ss_pred             ecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeeccc-ccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585           15 ELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   90 (304)
Q Consensus        15 ~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~   90 (304)
                      +.|+.+   +.++.+|.++++|+.+|.|++|+..- +.+..++.| ...|.+++|+|+...+++++.   ||+|+|||..
T Consensus       135 QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~Sd---Dg~ikiWdf~  210 (464)
T KOG0284|consen  135 QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD---DGTIKIWDFR  210 (464)
T ss_pred             hhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecC---CCeEEEEecc
Confidence            445554   56788999999999999999999764 444555554 489999999999999999999   9999999999


Q ss_pred             CceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           91 DNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      ..+....+.+|.-.|.+++|+|...++++++.|..|++||.++++++..+.                             
T Consensus       211 ~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-----------------------------  261 (464)
T KOG0284|consen  211 MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-----------------------------  261 (464)
T ss_pred             CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-----------------------------
Confidence            988888899999999999999999999999999999999999999987775                             


Q ss_pred             CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEecCC
Q 036585          171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~  249 (304)
                      .|...|..+.|+|++++|++++.|..+++||+++.+.+..++   +|...++++.|+| ...+|.+|+.||.|..|.+..
T Consensus       262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r---~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~  338 (464)
T KOG0284|consen  262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR---GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL  338 (464)
T ss_pred             hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh---cchhhheeeccccccccceeeccCCCceEEEeccc
Confidence            677889999999999999999999999999999888888888   7999999999999 667899999999999999986


Q ss_pred             Cceeeee-eccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          250 GKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       250 ~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      .+++..+ .+|...|++++|+|-|.+|++|+.|  +++|.-.
T Consensus       339 ~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  339 EEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             cccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            6666555 6899999999999999999999999  9999653

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.1e-38  Score=222.93  Aligned_cols=251  Identities=16%  Similarity=0.277  Sum_probs=210.8

Q ss_pred             eeeeecce---eeEeecccCcEEEEeeCCCeEEEEecCCcc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585           11 KVSLELSE---EILQSMEVGIYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   85 (304)
Q Consensus        11 ~~~~~~~~---~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~   85 (304)
                      ..++++.+   +.+...|+++.||+++.- .||+||+.+++  ++.++.+|+..|.++.|..+|+.+++|+.   ||+++
T Consensus        33 ~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse---Dgt~k  108 (311)
T KOG0315|consen   33 SRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE---DGTVK  108 (311)
T ss_pred             EEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCC---CceEE
Confidence            44455443   456778899999999875 69999998764  68999999999999999999999999999   99999


Q ss_pred             EEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc---ceeEecCCCeEE--Eec
Q 036585           86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAYDDQGLVF--GYE  160 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~  160 (304)
                      |||++...+.+.++ |..+|.++..+|+...|++|..+|.|++||+....+...+-....   ..+...+++..+  ...
T Consensus       109 IWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn  187 (311)
T KOG0315|consen  109 IWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN  187 (311)
T ss_pred             EEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC
Confidence            99999977777776 789999999999999999999999999999998876655543322   245566776544  445


Q ss_pred             CCCeEEEEec---------------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEE
Q 036585          161 KGPLDIFSVG---------------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEA  224 (304)
Q Consensus       161 ~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~  224 (304)
                      .|...+|++-               .|++.+..+.+||++++|++++.|.+++||+.++. +....+.   +|...+..+
T Consensus       188 kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~---gh~rWvWdc  264 (311)
T KOG0315|consen  188 KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT---GHQRWVWDC  264 (311)
T ss_pred             CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee---cCCceEEee
Confidence            6677777654               46778889999999999999999999999999887 4444444   688999999


Q ss_pred             EEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeC
Q 036585          225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWA  269 (304)
Q Consensus       225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  269 (304)
                      +||.||.||++|+.|+.+++||+..++.++.+.+|..+..|++.+
T Consensus       265 ~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  265 AFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             eeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            999999999999999999999999999999999999888887764

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.8e-39  Score=236.97  Aligned_cols=243  Identities=17%  Similarity=0.280  Sum_probs=220.3

Q ss_pred             eeeeecceeeEe---ecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           11 KVSLELSEEILQ---SMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        11 ~~~~~~~~~~i~---~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ...+.+|-+-|.   +-|.+.++++|+.|++++|||+.++++..++.+|...|..+++|+-..++++++.   |+.|+.|
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge---dk~VKCw  220 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE---DKQVKCW  220 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC---CCeeEEE
Confidence            344667766554   4567899999999999999999999999999999999999999999999999998   9999999


Q ss_pred             EccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585           88 SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF  167 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (304)
                      |++.++.++.+.+|-..|+|++.+|.-..|++|+.|.++++||+++...+..+.                          
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~--------------------------  274 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS--------------------------  274 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec--------------------------
Confidence            999999999999999999999999999999999999999999999987765554                          


Q ss_pred             EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEec
Q 036585          168 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSV  247 (304)
Q Consensus       168 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~  247 (304)
                         +|..+|..+.+.|....+++|+.|++|++||++.|+...++.   .|...+.+++.+|....+|+++.|. |+-|++
T Consensus       275 ---GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt---~hkksvral~lhP~e~~fASas~dn-ik~w~~  347 (460)
T KOG0285|consen  275 ---GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT---HHKKSVRALCLHPKENLFASASPDN-IKQWKL  347 (460)
T ss_pred             ---CCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee---cccceeeEEecCCchhhhhccCCcc-ceeccC
Confidence               889999999999988889999999999999999999998888   6889999999999999999999886 999999


Q ss_pred             CCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          248 RSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       248 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      ..+..+..+.+|..-|++++.+.|+ ++++|+++  +.+|+|...
T Consensus       348 p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg  391 (460)
T KOG0285|consen  348 PEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG  391 (460)
T ss_pred             CccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence            9999999999999999999998887 55666666  788888654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.3e-38  Score=227.72  Aligned_cols=273  Identities=18%  Similarity=0.245  Sum_probs=225.9

Q ss_pred             eeeeecceee---EeecccCcEEEEeeCCCeEEEEecC-CcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           11 KVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        11 ~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      ...+.+|++.   +.|+|+|.+||+|+.|..|.+|++. .-+-...+++|.+.|..+.|.+|++.+++++.   |.+++.
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt---Dk~v~~  116 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT---DKTVRG  116 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC---CceEEE
Confidence            3345666655   6789999999999999999999954 44566788899999999999999999999999   999999


Q ss_pred             EEccCceeeeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEe-ccceeEecCC--CeEEEecCC
Q 036585           87 LSLHDNKYSRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQ--GLVFGYEKG  162 (304)
Q Consensus        87 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~  162 (304)
                      ||+++|+.++.+++|..-|.++.-+.-| .++.+++.|+++++||+++...++.+... ....+.+...  ..+.+.-++
T Consensus       117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence            9999999999999999999998854433 46778899999999999988887776332 2234445433  455566677


Q ss_pred             CeEEEEe---------cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC----ceeEEEEeCC-CCCCcceEEEEcC
Q 036585          163 PLDIFSV---------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----TLLSTYNVKP-VSRNSTLEASFSP  228 (304)
Q Consensus       163 ~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~-~~~~~i~~~~~s~  228 (304)
                      .+++|++         .+|...|+.+..+|+|.++.+-+.|.++++||++-.    +++..+.... .-......++|+|
T Consensus       197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp  276 (338)
T KOG0265|consen  197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP  276 (338)
T ss_pred             ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence            8888876         478999999999999999999999999999998743    3355555221 1123455689999


Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCceEEec
Q 036585          229 EGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWI  286 (304)
Q Consensus       229 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~  286 (304)
                      +++++.+|+.|..+++||......+..+++|.+.|++++|+|...+|.+++.|-+||.
T Consensus       277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            9999999999999999999888999999999999999999999999999999966664

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-38  Score=239.52  Aligned_cols=276  Identities=22%  Similarity=0.330  Sum_probs=223.3

Q ss_pred             ceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCc---ceeeeecccccceeEEEEccCCCeEEEEecCCCCCc
Q 036585           10 DKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   83 (304)
Q Consensus        10 ~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~   83 (304)
                      ..+.+.-|.+-   ++++++|+|||+++.|.+..+|++...   +...++.+|..+|..+.||||.++|++++.   +..
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~---~e~  292 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF---DEV  292 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc---hHh
Confidence            34445545443   678899999999999999999987643   457889999999999999999999999998   899


Q ss_pred             eEEEEccCceeeeecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec--eEEEeccceeEecCCC--eEEE
Q 036585           84 LRLLSLHDNKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQGRPAAAYDDQG--LVFG  158 (304)
Q Consensus        84 i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~  158 (304)
                      +.+||+.+|.....+. ++...+.+++|.|||..+++|+.|+++..||+.......  -.+.+....++..++|  .+..
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v  372 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLV  372 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEE
Confidence            9999999999887776 345789999999999999999999999999987543211  1112223345556665  4446


Q ss_pred             ecCCCeEEEEecC--------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-C
Q 036585          159 YEKGPLDIFSVGG--------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-E  229 (304)
Q Consensus       159 ~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~  229 (304)
                      ..+..+.++..+.        ...+++++..|.+++++++.-.+..+++||++..+.+..+..+. ....+..-||-- +
T Consensus       373 ~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk-q~~fiIrSCFgg~~  451 (519)
T KOG0293|consen  373 TVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK-QGHFIIRSCFGGGN  451 (519)
T ss_pred             ecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccc-ccceEEEeccCCCC
Confidence            6677777776543        45789999999999999999999999999999888888887432 223444456655 5


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCC-cEEEEecCc--eEEeccCC
Q 036585          230 GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       230 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~~~  289 (304)
                      ..++++|++|+.|+||+..+++++..+.||...|++++|+|.. .++|+|++|  ||||-+.-
T Consensus       452 ~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  452 DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            5899999999999999999999999999999999999999955 688999999  99997753

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.1e-37  Score=248.34  Aligned_cols=266  Identities=15%  Similarity=0.230  Sum_probs=227.1

Q ss_pred             eeEeecccCcEEEEeeCC-CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           19 EILQSMEVGIYLVTASDD-ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ..+.+...|++||.|+.. |.+.||++++...+...++|...+.+++++|||+++++|+.   ||.|+|||..++-+..+
T Consensus       311 ~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e---DgKVKvWn~~SgfC~vT  387 (893)
T KOG0291|consen  311 LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE---DGKVKVWNTQSGFCFVT  387 (893)
T ss_pred             eEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC---CCcEEEEeccCceEEEE
Confidence            345666679999999865 78999999999999999999999999999999999999999   99999999999999999


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc---eeEecCCCeEEEecC---CCeEEEEe--
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---AAAYDDQGLVFGYEK---GPLDIFSV--  169 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~--  169 (304)
                      |..|+..|+.+.|+..++.+++.+.||+|+.||+...+.-+++..+.+.   +++.++.|.++....   -.+.+|.+  
T Consensus       388 FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT  467 (893)
T KOG0291|consen  388 FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT  467 (893)
T ss_pred             eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec
Confidence            9999999999999999999999999999999999999988888766554   566787786664332   24566654  


Q ss_pred             -------cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCc
Q 036585          170 -------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS  241 (304)
Q Consensus       170 -------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  241 (304)
                             .+|+++|.+++|+|++..|++++.|.+|++||+-.. ....++.    ....+..++|+|+|+.|++++-||.
T Consensus       468 GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~----i~sdvl~vsfrPdG~elaVaTldgq  543 (893)
T KOG0291|consen  468 GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE----IRSDVLAVSFRPDGKELAVATLDGQ  543 (893)
T ss_pred             CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe----eccceeEEEEcCCCCeEEEEEecce
Confidence                   479999999999999999999999999999998654 3445555    6778999999999999999999999


Q ss_pred             EEEEecCCCceeeeee--------------------ccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          242 VHAWSVRSGKEVASWM--------------------SFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       242 i~v~d~~~~~~~~~~~--------------------~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      |.+||.+.+..+..+.                    ......+.+++++||..+++|+..  +.||+...+.
T Consensus       544 Itf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v  615 (893)
T KOG0291|consen  544 ITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV  615 (893)
T ss_pred             EEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence            9999998765543321                    123568899999999999999887  9999886554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.5e-37  Score=249.49  Aligned_cols=277  Identities=16%  Similarity=0.241  Sum_probs=228.5

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCe--EEEEecCCCCCceEEEEccCce-ee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRLLSLHDNK-YS   95 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~~~~d~~i~vwd~~~~~-~~   95 (304)
                      -.+.+.|.|..+++|+.|+.++|||+..+.+.+.+++|.+.|.++.|+|+-.+  |+++..   |+.+++||+++.. ++
T Consensus       109 i~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~---D~~v~vwnl~~~~tcl  185 (775)
T KOG0319|consen  109 ITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGAT---DGTVRVWNLNDKRTCL  185 (775)
T ss_pred             EEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCC---CceEEEEEcccCchHH
Confidence            34678888999999999999999999999999999999999999999997765  667776   9999999999655 48


Q ss_pred             eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc----------------ce------------
Q 036585           96 RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR----------------PA------------  147 (304)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~------------  147 (304)
                      ..+..|...|++++|.+++..+++++.|..+.+||+.+.+....++....                ..            
T Consensus       186 ~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~  265 (775)
T KOG0319|consen  186 HTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYW  265 (775)
T ss_pred             HHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEE
Confidence            88899999999999999999999999999999999864433222110000                00            


Q ss_pred             --------------------------------------------------------------------------------
Q 036585          148 --------------------------------------------------------------------------------  147 (304)
Q Consensus       148 --------------------------------------------------------------------------------  147 (304)
                                                                                                      
T Consensus       266 d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs  345 (775)
T KOG0319|consen  266 DSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNS  345 (775)
T ss_pred             ecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCC
Confidence                                                                                            


Q ss_pred             -----------------------eEec--CCC--eEE-------------------------------------------
Q 036585          148 -----------------------AAYD--DQG--LVF-------------------------------------------  157 (304)
Q Consensus       148 -----------------------~~~~--~~~--~~~-------------------------------------------  157 (304)
                                             ++.+  .++  .+.                                           
T Consensus       346 ~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~as  425 (775)
T KOG0319|consen  346 PELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGAS  425 (775)
T ss_pred             CceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCcc
Confidence                                   0000  000  000                                           


Q ss_pred             ----EecCCCeEEEEecC------------------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC
Q 036585          158 ----GYEKGPLDIFSVGG------------------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP  215 (304)
Q Consensus       158 ----~~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  215 (304)
                          +..+..+++|.+..                  |...|++++++|+.+++++|+.|.+.++|++...+...++.   
T Consensus       426 ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs---  502 (775)
T KOG0319|consen  426 FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS---  502 (775)
T ss_pred             EEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee---
Confidence                33334444444332                  56789999999999999999999999999999999999998   


Q ss_pred             CCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc-c
Q 036585          216 VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK-L  292 (304)
Q Consensus       216 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~-~  292 (304)
                      +|...+.++.|+|..+.+++++.|++|+||.+.++.+++++.+|...|..+.|-.++.+|++++.|  +++|++..+. +
T Consensus       503 GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~  582 (775)
T KOG0319|consen  503 GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE  582 (775)
T ss_pred             CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence            899999999999999999999999999999999999999999999999999999999999999999  9999997654 6


Q ss_pred             cccccCCCC
Q 036585          293 GAYVGRNRG  301 (304)
Q Consensus       293 ~~~~~~~~g  301 (304)
                      ..+.+|++-
T Consensus       583 ~tlD~H~Dr  591 (775)
T KOG0319|consen  583 MTLDAHNDR  591 (775)
T ss_pred             hhhhhccce
Confidence            778888764

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.8e-37  Score=255.04  Aligned_cols=239  Identities=23%  Similarity=0.401  Sum_probs=209.7

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEec-CCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDV-TAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      .+.|+++|+++++++.|++|+|||+ ..+..++++.+|...|++++|+|+++.+++|+.   |++|++||++++++...+
T Consensus       208 ~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~---D~tvriWd~~~~~~~~~l  284 (456)
T KOG0266|consen  208 DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSD---DGTVRIWDVRTGECVRKL  284 (456)
T ss_pred             eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecC---CCcEEEEeccCCeEEEee
Confidence            3789999999999999999999999 556899999999999999999999999999998   999999999999999999


Q ss_pred             ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee--ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585           99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ--GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA  176 (304)
Q Consensus        99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  176 (304)
                      .+|.+.|.+++|++++++|++++.|+.|++||+.++...  ..+...                          .... .+
T Consensus       285 ~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~--------------------------~~~~-~~  337 (456)
T KOG0266|consen  285 KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA--------------------------ENSA-PV  337 (456)
T ss_pred             eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCC--------------------------CCCC-ce
Confidence            999999999999999999999999999999999998843  332211                          0122 68


Q ss_pred             eEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585          177 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       177 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      +.++|+|+++++++++.|+.+++||++.+.....+..+......+.+..+++.+.++++|+.|+.|++||+.++..+..+
T Consensus       338 ~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l  417 (456)
T KOG0266|consen  338 TSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL  417 (456)
T ss_pred             eEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence            99999999999999999999999999999999888843221124455566789999999999999999999999999999


Q ss_pred             ecc-CCCCceEEeCCCCcEEEEec--Cc--eEEeccC
Q 036585          257 MSF-DTEPPVIKWAPGSLMFVTGS--SE--LSFWIPD  288 (304)
Q Consensus       257 ~~~-~~~i~~~~~~~~~~~l~s~~--~d--~~iw~~~  288 (304)
                      .+| ...+..+.++|...++++++  .|  +++|..+
T Consensus       418 ~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  418 EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999 88999999999999999998  45  7888664

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.5e-39  Score=245.65  Aligned_cols=245  Identities=18%  Similarity=0.292  Sum_probs=204.9

Q ss_pred             cceeeeecceeeEe---ecc-cCcEEEEeeCCCeEEEEecCC-cceeeeecccccceeEEEEccCCCeEEEEecCCCCCc
Q 036585            9 EDKVSLELSEEILQ---SME-VGIYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   83 (304)
Q Consensus         9 ~~~~~~~~~~~~i~---~~~-~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~   83 (304)
                      +..+...+|...+.   +.| .+.+|++++.|+.|+||++.. +++++++.+|..+|..++|+++|..+++++.   |+.
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf---D~~  281 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF---DRF  281 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec---cee
Confidence            34556677776554   556 689999999999999999886 8999999999999999999999999999998   999


Q ss_pred             eEEEEccCceeeeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585           84 LRLLSLHDNKYSRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG  162 (304)
Q Consensus        84 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (304)
                      |++||.++|++...+. ....++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+.                     
T Consensus       282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---------------------  339 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---------------------  339 (503)
T ss_pred             eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---------------------
Confidence            9999999999998886 45578999999988 799999999999999999999877664                     


Q ss_pred             CeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEe-----------------------------
Q 036585          163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-----------------------------  213 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-----------------------------  213 (304)
                              .|-+.|..+.|-++|+.+++++.|+.+++|+.+....+.....                             
T Consensus       340 --------~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~i  411 (503)
T KOG0282|consen  340 --------RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAI  411 (503)
T ss_pred             --------hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEE
Confidence                    3556778888888888888888888888887654322211100                             


Q ss_pred             --------------CCC--CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCC-cEEE
Q 036585          214 --------------KPV--SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS-LMFV  276 (304)
Q Consensus       214 --------------~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~  276 (304)
                                    ..+  ..+.-..+.|||||.+|++|+.||.+.+||.++.+.+..++.|..++..+.|+|.. ..+|
T Consensus       412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skva  491 (503)
T KOG0282|consen  412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVA  491 (503)
T ss_pred             EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeE
Confidence                          001  12345568999999999999999999999999999999999999999999999965 6899


Q ss_pred             EecCc--eEEec
Q 036585          277 TGSSE--LSFWI  286 (304)
Q Consensus       277 s~~~d--~~iw~  286 (304)
                      +++.+  |++|+
T Consensus       492 t~~w~G~Ikiwd  503 (503)
T KOG0282|consen  492 TCGWDGLIKIWD  503 (503)
T ss_pred             ecccCceeEecC
Confidence            99999  88885

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.2e-36  Score=219.48  Aligned_cols=247  Identities=14%  Similarity=0.237  Sum_probs=211.5

Q ss_pred             eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEE
Q 036585           49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLL  128 (304)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  128 (304)
                      ..++|++|...|.++.|++|.+++++++.   ||.+.|||.-+...++.++.....|..++|+|.++++++|+.|....|
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSq---DGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi  123 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQ---DGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI  123 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeecc---CCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence            34789999999999999999999999999   999999999998888888888899999999999999999999999999


Q ss_pred             EeCCccee------eceEEEeccc--eeEecCCC-eEEEecCCCeEEEEec---------CCCCCceEEEEec-CCcEEE
Q 036585          129 WDQRAEKC------QGLLRVQGRP--AAAYDDQG-LVFGYEKGPLDIFSVG---------GDISDANVVKFSN-DGRLML  189 (304)
Q Consensus       129 wd~~~~~~------~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~-~~~~l~  189 (304)
                      |++.+...      .+.+..+...  ...+-+++ .+.+..+....+|+++         +|.+.|.++.++| +++.|+
T Consensus       124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             EecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence            99986522      1222222222  23344444 5556677777788764         6999999999999 999999


Q ss_pred             EeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee--ccCCCCceEE
Q 036585          190 LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM--SFDTEPPVIK  267 (304)
Q Consensus       190 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~  267 (304)
                      +|+.|+..++||++.+....+|.   +|...|++++|.|+|.-+++|+.|++.++||++..+.+..+.  ....+|++++
T Consensus       204 Sg~cD~~aklWD~R~~~c~qtF~---ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~  280 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVRSGQCVQTFE---GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVA  280 (343)
T ss_pred             ecccccceeeeeccCcceeEeec---ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEE
Confidence            99999999999999999999999   899999999999999999999999999999999988887774  3346799999


Q ss_pred             eCCCCcEEEEecCc--eEEecc-CCccccccccCCCC
Q 036585          268 WAPGSLMFVTGSSE--LSFWIP-DLSKLGAYVGRNRG  301 (304)
Q Consensus       268 ~~~~~~~l~s~~~d--~~iw~~-~~~~~~~~~~~~~g  301 (304)
                      ||..|++|++|..|  +.+||. ..+....+.||+.-
T Consensus       281 FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR  317 (343)
T KOG0286|consen  281 FSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR  317 (343)
T ss_pred             EcccccEEEeeecCCceeEeeccccceEEEeeccCCe
Confidence            99999999999888  899986 66777888888763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=9.9e-36  Score=233.42  Aligned_cols=262  Identities=26%  Similarity=0.473  Sum_probs=228.4

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      ..+.+++++++|++++.||.+++|++.+++....+..|...+..+.|+|+++.+++++.   ++.|++|++.+++.+..+
T Consensus        13 ~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~~~~~~~~~~~~   89 (289)
T cd00200          13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS---DKTIRLWDLETGECVRTL   89 (289)
T ss_pred             EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC---CCeEEEEEcCcccceEEE
Confidence            34677889999999999999999999998888888899989999999999999999998   999999999998888888


Q ss_pred             ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec--cceeEecCCC-eEEEec-CCCeEEEEec----
Q 036585           99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG-LVFGYE-KGPLDIFSVG----  170 (304)
Q Consensus        99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~-~~~~~~~~~~----  170 (304)
                      ..|...+.++.|+|+++++++++.++.+++||+++.+....+..+.  ...+.+++++ .++... ++.+.+|++.    
T Consensus        90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~  169 (289)
T cd00200          90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC  169 (289)
T ss_pred             eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence            8899999999999998889888889999999999877766665333  3356677754 344444 7888888765    


Q ss_pred             -----CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEE
Q 036585          171 -----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAW  245 (304)
Q Consensus       171 -----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~  245 (304)
                           .+...+.++.|+|+++.+++++.+|.|++||+++++....+.   .+...+.+++|+|++.++++++.||.|++|
T Consensus       170 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~  246 (289)
T cd00200         170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR---GHENGVNSVAFSPDGYLLASGSEDGTIRVW  246 (289)
T ss_pred             ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh---hcCCceEEEEEcCCCcEEEEEcCCCcEEEE
Confidence                 355689999999999999999999999999999988888775   477799999999999899998889999999


Q ss_pred             ecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585          246 SVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       246 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      |+.+++....+..|...|.+++|+|++++|++++.|  +++|+
T Consensus       247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         247 DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            999999888888999999999999999999999998  88874

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=9.9e-39  Score=235.92  Aligned_cols=224  Identities=18%  Similarity=0.343  Sum_probs=200.9

Q ss_pred             ccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc
Q 036585           25 EVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR  104 (304)
Q Consensus        25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  104 (304)
                      -|...+++|..|++|+|||.++..+++.+.+|++.|.|+.|  +.+.+++|++   |.+|++||+++++++.++-.|...
T Consensus       205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSS---DsTvrvWDv~tge~l~tlihHcea  279 (499)
T KOG0281|consen  205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSS---DSTVRVWDVNTGEPLNTLIHHCEA  279 (499)
T ss_pred             ecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCC---CceEEEEeccCCchhhHHhhhcce
Confidence            35778999999999999999999999999999999999999  6778999998   999999999999999999999999


Q ss_pred             EEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC
Q 036585          105 VVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND  184 (304)
Q Consensus       105 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  184 (304)
                      |..+.|+  ..++++++.|.++.+||+.....+....                          .+.+|...|+.+.|+  
T Consensus       280 VLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rr--------------------------VLvGHrAaVNvVdfd--  329 (499)
T KOG0281|consen  280 VLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRR--------------------------VLVGHRAAVNVVDFD--  329 (499)
T ss_pred             eEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHH--------------------------HHhhhhhheeeeccc--
Confidence            9999997  4599999999999999998765332211                          113688899999994  


Q ss_pred             CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCc
Q 036585          185 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPP  264 (304)
Q Consensus       185 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~  264 (304)
                      .+++++++.|.+|++|++.+++.+.++.   +|...|-|+.+  .++++++|+.|.+|++||+..|.+++.+.+|..-|.
T Consensus       330 ~kyIVsASgDRTikvW~~st~efvRtl~---gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvR  404 (499)
T KOG0281|consen  330 DKYIVSASGDRTIKVWSTSTCEFVRTLN---GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR  404 (499)
T ss_pred             cceEEEecCCceEEEEeccceeeehhhh---cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhh
Confidence            6699999999999999999999999998   79999988876  789999999999999999999999999999999999


Q ss_pred             eEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          265 VIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       265 ~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      ++.|  |.+.+++|+.|  +++|++...
T Consensus       405 ciRF--d~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  405 CIRF--DNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             heee--cCceeeeccccceEEEEecccc
Confidence            9999  66789999999  999998654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-35  Score=212.03  Aligned_cols=247  Identities=17%  Similarity=0.322  Sum_probs=199.9

Q ss_pred             ceeeeeccee---eEeeccc-CcEEEEeeCCCeEEEEecCC---cceeeeec-ccccceeEEEEccCCCeEEEEecCCCC
Q 036585           10 DKVSLELSEE---ILQSMEV-GIYLVTASDDESIRLYDVTA---ATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWD   81 (304)
Q Consensus        10 ~~~~~~~~~~---~i~~~~~-~~~l~~~~~d~~i~vw~~~~---~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d   81 (304)
                      ..+.+++|.+   .+.++|- |..||+++.|+.||+|+...   -.+...+. +|+..|..++|+|.|++|++++.   |
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF---D   82 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF---D   82 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec---c
Confidence            3455667766   4677787 88999999999999999874   34444443 69999999999999999999998   9


Q ss_pred             CceEEEEccCc--eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEe
Q 036585           82 ESLRLLSLHDN--KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGY  159 (304)
Q Consensus        82 ~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (304)
                      .++.||.-..+  +++..+.+|...|.|++|+++|++||+++.|+.|.||.+..........                  
T Consensus        83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~a------------------  144 (312)
T KOG0645|consen   83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIA------------------  144 (312)
T ss_pred             ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEe------------------
Confidence            99999987755  5788899999999999999999999999999999999987443322211                  


Q ss_pred             cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC---CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585          160 EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF---RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                              .++.|...|..+.|+|...+|++++.|.+|++|.-.   ...+..++.   +|...|.+++|+|.|..|+++
T Consensus       145 --------VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~---g~~~TVW~~~F~~~G~rl~s~  213 (312)
T KOG0645|consen  145 --------VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD---GHENTVWSLAFDNIGSRLVSC  213 (312)
T ss_pred             --------eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec---CccceEEEEEecCCCceEEEe
Confidence                    234788999999999999999999999999999876   335566666   788899999999999999999


Q ss_pred             cCCCcEEEEecCC-------Cce------------------ee------------------eeeccCCCCceEEeCCC-C
Q 036585          237 SGDGSVHAWSVRS-------GKE------------------VA------------------SWMSFDTEPPVIKWAPG-S  272 (304)
Q Consensus       237 ~~dg~i~v~d~~~-------~~~------------------~~------------------~~~~~~~~i~~~~~~~~-~  272 (304)
                      +.|++++||-+.+       ++.                  +.                  .-..|...|++++|+|. .
T Consensus       214 sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~  293 (312)
T KOG0645|consen  214 SDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS  293 (312)
T ss_pred             cCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC
Confidence            9999999997432       110                  00                  01246677899999994 6


Q ss_pred             cEEEEecCc--eEEeccC
Q 036585          273 LMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       273 ~~l~s~~~d--~~iw~~~  288 (304)
                      ..|++++.|  +++|.+.
T Consensus       294 ~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  294 NRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CceeecCCCceEEEEEec
Confidence            788888888  8888763

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=7.6e-36  Score=221.43  Aligned_cols=270  Identities=13%  Similarity=0.200  Sum_probs=223.1

Q ss_pred             ceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           10 DKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        10 ~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      ....+.+|.+.   +.|+.+|.+||||..+|.|+||...++.....+......+.=+.|+|.+..|++|+.   ||.+.+
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~---DGsvWm  174 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST---DGSVWM  174 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecC---CCcEEE
Confidence            45566777765   456788999999999999999999999998888766778889999999999999998   999999


Q ss_pred             EEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec-------------cceeEecCC
Q 036585           87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-------------RPAAAYDDQ  153 (304)
Q Consensus        87 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~  153 (304)
                      |.+.++...+.+.+|..++++=.|.|+|+.++++..||+|++||+.++++...+....             ...+..+.+
T Consensus       175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e  254 (399)
T KOG0296|consen  175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE  254 (399)
T ss_pred             EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence            9999988889999999999999999999999999999999999999998877665211             112233444


Q ss_pred             CeEEEecCCCeEEEEecC---------CCCCceEE---EEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcc
Q 036585          154 GLVFGYEKGPLDIFSVGG---------DISDANVV---KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST  221 (304)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~---------~~~~v~~~---~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i  221 (304)
                      +.+........++.....         +...+.++   .++..=.++++|+.||+|.+||+...+......    |...|
T Consensus       255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~----he~~V  330 (399)
T KOG0296|consen  255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE----HEDGV  330 (399)
T ss_pred             ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc----CCCce
Confidence            444444443333333222         33334444   445566788999999999999999888777776    88889


Q ss_pred             eEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585          222 LEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       222 ~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~  287 (304)
                      +.+.|-+ ..+|++++.||.|+.||.++|+++..+.+|..+|.+++.+|+.++++|+|.|  .+|+..
T Consensus       331 ~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  331 TKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             EEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            9999998 7899999999999999999999999999999999999999999999999999  777754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.9e-36  Score=240.31  Aligned_cols=237  Identities=17%  Similarity=0.309  Sum_probs=218.0

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      +..+++--+.|++|-..|...+|++..-.+++.+.-...+|..++|+..|..++.++..  -|.+-||+.++...+...+
T Consensus       270 aa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--lgQLlVweWqsEsYVlKQQ  347 (893)
T KOG0291|consen  270 AAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--LGQLLVWEWQSESYVLKQQ  347 (893)
T ss_pred             eeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc--cceEEEEEeeccceeeecc
Confidence            34566667899999999999999999999999999888899999999999999999974  6899999999999999999


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV  179 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  179 (304)
                      +|...+.+++++|||+++++|+.||.|++||..++-+..++.                             .|++.|+.+
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-----------------------------eHts~Vt~v  398 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-----------------------------EHTSGVTAV  398 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-----------------------------cCCCceEEE
Confidence            999999999999999999999999999999999998877765                             688999999


Q ss_pred             EEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC-cEEEEecCCCceeeeeec
Q 036585          180 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVHAWSVRSGKEVASWMS  258 (304)
Q Consensus       180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~  258 (304)
                      .|+..|+.+++++.||+|+.||+...+..+++..+  ......+++..|.|..+.+|+.|. .|++|++++|+.+..+.+
T Consensus       399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P--~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG  476 (893)
T KOG0291|consen  399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP--EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG  476 (893)
T ss_pred             EEEecCCEEEEeecCCeEEeeeecccceeeeecCC--CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence            99999999999999999999999999999999853  445677889999999999999887 599999999999999999


Q ss_pred             cCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          259 FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       259 ~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      |.+||.+++|+|++..|+++|.|  +++|++=.
T Consensus       477 HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~  509 (893)
T KOG0291|consen  477 HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS  509 (893)
T ss_pred             CCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence            99999999999999999999999  99998733

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.1e-36  Score=228.11  Aligned_cols=231  Identities=21%  Similarity=0.313  Sum_probs=204.2

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      .++|...|+||++++.|+++.+||..+++..+.+..|..+-..+.|-.+. .+++.+.   |+.|+|+.+....++.++.
T Consensus       281 slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~ts~t---d~~i~V~kv~~~~P~~t~~  356 (524)
T KOG0273|consen  281 SLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFATSST---DGCIHVCKVGEDRPVKTFI  356 (524)
T ss_pred             EEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-eEeecCC---CceEEEEEecCCCcceeee
Confidence            46788889999999999999999999999999999999887888997554 5666666   9999999999999999999


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV  179 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  179 (304)
                      +|.++|.++.|.|.+.+|++++.|++++||..........+.                             .|...|..+
T Consensus       357 GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-----------------------------~Hskei~t~  407 (524)
T KOG0273|consen  357 GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-----------------------------AHSKEIYTI  407 (524)
T ss_pred             cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-----------------------------hhccceeeE
Confidence            999999999999999999999999999999987766655443                             566778888


Q ss_pred             EEecCC---------cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585          180 KFSNDG---------RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG  250 (304)
Q Consensus       180 ~~~~~~---------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~  250 (304)
                      .|+|+|         ..+++++.|++|++||+..+.++..+.   .|..+|++++|+|+|+|+|+|+.||.|++|+.+++
T Consensus       408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~---kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~  484 (524)
T KOG0273|consen  408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM---KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG  484 (524)
T ss_pred             eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec---cCCCceEEEEecCCCcEEEecCCCCeeEeccccch
Confidence            888854         478899999999999999999999998   69999999999999999999999999999999999


Q ss_pred             ceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585          251 KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       251 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~  287 (304)
                      +..+.+.+ .+.|..++|+.+|.+|..+-.|  +.+-++
T Consensus       485 ~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  485 KLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             heeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            99998864 4569999999999988877777  665554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-36  Score=238.00  Aligned_cols=239  Identities=15%  Similarity=0.279  Sum_probs=220.4

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      ..|.++|...+++++-.+|.|.|||.++...++.+.-..-+|.+..|-+-.+.+++|+.   |..|+||+.++++.+..|
T Consensus        17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsD---D~~IrVfnynt~ekV~~F   93 (794)
T KOG0276|consen   17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSD---DMQIRVFNYNTGEKVKTF   93 (794)
T ss_pred             eeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecC---CceEEEEecccceeeEEe
Confidence            45788999999999999999999999999999999998999999999999999999999   999999999999999999


Q ss_pred             ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce-eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585           99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus        99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      ..|.+.|.+++.+|...++++++.|-+|++||.+..- +.+.+                             ++|...|.
T Consensus        94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf-----------------------------eGH~HyVM  144 (794)
T KOG0276|consen   94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF-----------------------------EGHEHYVM  144 (794)
T ss_pred             eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE-----------------------------cCcceEEE
Confidence            9999999999999999999999999999999987652 22333                             37888999


Q ss_pred             EEEEec-CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC--CCcEEEEecCCCcEEEEecCCCceee
Q 036585          178 VVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP--EGMFVISGSGDGSVHAWSVRSGKEVA  254 (304)
Q Consensus       178 ~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~  254 (304)
                      +++|+| |.+.|++++.|++|++|.+.+..+..++.   +|...|+++.|-+  |..+|++|+.|.+|+|||.++..+++
T Consensus       145 qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~  221 (794)
T KOG0276|consen  145 QVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ  221 (794)
T ss_pred             EEEecCCCccceeeeeccccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH
Confidence            999999 56789999999999999999999999999   8999999999988  44799999999999999999999999


Q ss_pred             eeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585          255 SWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       255 ~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~  292 (304)
                      ++.+|...|+.+.|+|.-..+++|++|  ++||.-..-++
T Consensus       222 TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  222 TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             HhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence            999999999999999999999999999  99997655443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-36  Score=245.27  Aligned_cols=237  Identities=21%  Similarity=0.293  Sum_probs=196.4

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCC-----------------------------------------------------
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTA-----------------------------------------------------   46 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~-----------------------------------------------------   46 (304)
                      ++.|++||+|||+||.|+.|+||.+..                                                     
T Consensus       272 ~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p  351 (712)
T KOG0283|consen  272 AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLP  351 (712)
T ss_pred             EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCC
Confidence            367889999999999999999998754                                                     


Q ss_pred             -------cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcC-CCCEEE
Q 036585           47 -------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCS-SKDCFI  118 (304)
Q Consensus        47 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~  118 (304)
                             .++++.+.+|.+.|..+.|+.++ +|++++.   |.+|++|++...++++.|. |.+.|+|++|+| |.++|+
T Consensus       352 ~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSM---DKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFi  426 (712)
T KOG0283|consen  352 LKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSM---DKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFI  426 (712)
T ss_pred             CccccccccchhhhhccchhheecccccCC-eeEeccc---cccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEe
Confidence                   02234567899999999999655 7888887   9999999999999999998 999999999999 888999


Q ss_pred             EcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEE
Q 036585          119 SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH  198 (304)
Q Consensus       119 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  198 (304)
                      +|+-||.++||++...+......                              -..-|++++|.|||+..++|+.+|.++
T Consensus       427 SGSLD~KvRiWsI~d~~Vv~W~D------------------------------l~~lITAvcy~PdGk~avIGt~~G~C~  476 (712)
T KOG0283|consen  427 SGSLDGKVRLWSISDKKVVDWND------------------------------LRDLITAVCYSPDGKGAVIGTFNGYCR  476 (712)
T ss_pred             ecccccceEEeecCcCeeEeehh------------------------------hhhhheeEEeccCCceEEEEEeccEEE
Confidence            99999999999998776554332                              225789999999999999999999999


Q ss_pred             EEEcCCCceeEEEEeCC-----CCCCcceEEEEcCC-CcEEEEecCCCcEEEEecCCCceeeeeeccCCC--CceEEeCC
Q 036585          199 VLDSFRGTLLSTYNVKP-----VSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTE--PPVIKWAP  270 (304)
Q Consensus       199 ~~d~~~~~~~~~~~~~~-----~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~--i~~~~~~~  270 (304)
                      +|++...+.........     .....|+.+.|.|. ...+++.+.|..|||||.++.+++..++++...  -....|+.
T Consensus       477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~  556 (712)
T KOG0283|consen  477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS  556 (712)
T ss_pred             EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence            99998877766655321     11237999999984 345777889999999999988888888766433  34567999


Q ss_pred             CCcEEEEecCc--eEEeccCCcc
Q 036585          271 GSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       271 ~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      ||++|+++++|  +.||..+...
T Consensus       557 Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  557 DGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             CCCEEEEeecCceEEEEeCCCCc
Confidence            99999999999  8888875433

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.3e-37  Score=224.13  Aligned_cols=268  Identities=19%  Similarity=0.300  Sum_probs=204.7

Q ss_pred             ecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeec--------ccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           15 ELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN--------SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        15 ~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      +.|.+...|+|||+||++|+.||.|.+||..+|+....++        .+..+|.|++|+.|...+++|+.   ||.|++
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq---DGkIKv  289 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ---DGKIKV  289 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc---CCcEEE
Confidence            4467788999999999999999999999999988665433        46789999999999999999999   999999


Q ss_pred             EEccCceeeeecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCC--eEEEecC
Q 036585           87 LSLHDNKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQG--LVFGYEK  161 (304)
Q Consensus        87 wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~  161 (304)
                      |.+++|.+++.|. .|+..|+|+.|+.|+..+++++.|.++++.-+.++++...++.+...  ...+.++|  .+....+
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence            9999999999987 89999999999999999999999999999999999999888733222  12233333  2223334


Q ss_pred             CCeEEEEecC-----------CCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585          162 GPLDIFSVGG-----------DISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  229 (304)
Q Consensus       162 ~~~~~~~~~~-----------~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~  229 (304)
                      +.+++|+.+.           ...+|+.+-.-| +...++++...+++++.++ .|+.++.+....-..+...+++.||.
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpk  448 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPK  448 (508)
T ss_pred             ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCC
Confidence            4444443321           122333333333 2233444444444444443 33444444432223445566789999


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585          230 GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       230 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      |.++++.++|+.++.|...+|++-..+.-|...+-.++-+|..+.+|+-++|  +++|.
T Consensus       449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            9999999999999999999999999999999999999999999999999999  88885

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.3e-34  Score=221.10  Aligned_cols=278  Identities=15%  Similarity=0.255  Sum_probs=221.1

Q ss_pred             eeeecceeeEeeccc---C-cEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           12 VSLELSEEILQSMEV---G-IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        12 ~~~~~~~~~i~~~~~---~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      -.+.+|...+.....   . =+++|++.|++|.+|+-..-+...+++.|..-|+|+.|+|||+++++++.   ||.+.+|
T Consensus       141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs---Dgki~iy  217 (603)
T KOG0318|consen  141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS---DGKIYIY  217 (603)
T ss_pred             ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC---CccEEEE
Confidence            345666666554432   2 37999999999999997777888889999999999999999999999999   9999999


Q ss_pred             EccCceeeeecc---cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc-----eeEecCCCeEEEe
Q 036585           88 SLHDNKYSRYFK---GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-----AAAYDDQGLVFGY  159 (304)
Q Consensus        88 d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  159 (304)
                      |-.+++.+..+.   +|++.|.+++|+||++.+++++.|.+++|||+.+.+.++.+......     -..|..+.++...
T Consensus       218 DGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVS  297 (603)
T KOG0318|consen  218 DGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVS  297 (603)
T ss_pred             cCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEE
Confidence            999999999887   89999999999999999999999999999999999888877654331     2233434444433


Q ss_pred             cCCCeE---------EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEE-----------EEeC-----
Q 036585          160 EKGPLD---------IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST-----------YNVK-----  214 (304)
Q Consensus       160 ~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-----------~~~~-----  214 (304)
                      -.+.+.         +..+.+|...|+++..+|++++|++|+.||.|.-||..++..-+.           +...     
T Consensus       298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~  377 (603)
T KOG0318|consen  298 LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL  377 (603)
T ss_pred             cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE
Confidence            344443         445668999999999999999999999999999999765432100           0000     


Q ss_pred             --------------------------------------C------------------------CCCCcceEEEEcCCCcE
Q 036585          215 --------------------------------------P------------------------VSRNSTLEASFSPEGMF  232 (304)
Q Consensus       215 --------------------------------------~------------------------~~~~~i~~~~~s~~~~~  232 (304)
                                                            +                        .......+++++|+++.
T Consensus       378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~  457 (603)
T KOG0318|consen  378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE  457 (603)
T ss_pred             EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE
Confidence                                                  0                        00112445789999999


Q ss_pred             EEEecCCCcEEEEecCCCce--eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585          233 VISGSGDGSVHAWSVRSGKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       233 l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~  292 (304)
                      ++.|+.|+.|+||.+.....  ...+..|.++|+++++|||+.+||++...  +.+|+...+..
T Consensus       458 vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~  521 (603)
T KOG0318|consen  458 VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV  521 (603)
T ss_pred             EEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce
Confidence            99999999999999987554  33456799999999999999999999887  88999876655

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=7.6e-35  Score=207.14  Aligned_cols=259  Identities=15%  Similarity=0.224  Sum_probs=214.3

Q ss_pred             ecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeee--ecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEccC
Q 036585           15 ELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHD   91 (304)
Q Consensus        15 ~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~~~   91 (304)
                      ..+...+.+..+|..|++|+.|+++++|+++..+....  ..+|.+.|-.++|+|. ...+++++.   |.+|++||++.
T Consensus        20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---dk~ir~wd~r~   96 (313)
T KOG1407|consen   20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---DKTIRIWDIRS   96 (313)
T ss_pred             hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC---CceEEEEEecc
Confidence            34556789999999999999999999999987755443  5678889999999984 556777777   99999999999


Q ss_pred             ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec-cceeEecCCC--eEEEecCCCeEEE-
Q 036585           92 NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQG--LVFGYEKGPLDIF-  167 (304)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~-  167 (304)
                      +++........+.+ -+.|+|+|++++.++.|..|.+.|.++.+.....+... ....++..++  +++....|.+.+. 
T Consensus        97 ~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILs  175 (313)
T KOG1407|consen   97 GKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILS  175 (313)
T ss_pred             CcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEe
Confidence            99988887555554 47899999999999999999999999887765544322 1223333333  2223333455444 


Q ss_pred             --------EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585          168 --------SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD  239 (304)
Q Consensus       168 --------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  239 (304)
                              .++.|.....|+.|+|+|++|++|+.|..+.+||+...-+.+.+.   -+.-+|..+.||.||++||+|++|
T Consensus       176 ypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~dg~~lASaSED  252 (313)
T KOG1407|consen  176 YPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHDGRMLASASED  252 (313)
T ss_pred             ccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec---cccCceEEEEeccCcceeeccCcc
Confidence                    456789999999999999999999999999999999888888887   588999999999999999999999


Q ss_pred             CcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585          240 GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       240 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      ..|-|=++++|..+.+++ +.++...++|+|...+||-+++|
T Consensus       253 h~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  253 HFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             ceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            999999999999998886 88999999999999999998877

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.1e-36  Score=221.37  Aligned_cols=217  Identities=18%  Similarity=0.255  Sum_probs=200.9

Q ss_pred             ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEE
Q 036585           48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL  127 (304)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  127 (304)
                      ++.+.+++|.+.|.|+++.|....+++++.   |++|+|||+.+++...++.+|...|..+++++...|+++++.|+.|+
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~---DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSA---DRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCC---CceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            445667899999999999999999999998   99999999999999999999999999999999999999999999999


Q ss_pred             EEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce
Q 036585          128 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL  207 (304)
Q Consensus       128 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  207 (304)
                      .||++..+.++.+.                             +|.+.|.+++.+|.-..|++|+.|.++++||+++...
T Consensus       219 CwDLe~nkvIR~Yh-----------------------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~  269 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYH-----------------------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS  269 (460)
T ss_pred             EEechhhhhHHHhc-----------------------------cccceeEEEeccccceeEEecCCcceEEEeeecccce
Confidence            99999988877664                             7889999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEec
Q 036585          208 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWI  286 (304)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~  286 (304)
                      +..+.   +|..+|.++.+.|-...+++|+.|++|++||++.++....+..|...+.+++.+|....+|+++.| ++-|.
T Consensus       270 V~~l~---GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~  346 (460)
T KOG0285|consen  270 VHVLS---GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWK  346 (460)
T ss_pred             EEEec---CCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceecc
Confidence            99998   899999999999988889999999999999999999999999999999999999999999999999 99998


Q ss_pred             cC-CccccccccCC
Q 036585          287 PD-LSKLGAYVGRN  299 (304)
Q Consensus       287 ~~-~~~~~~~~~~~  299 (304)
                      +. ...+..+.+|+
T Consensus       347 ~p~g~f~~nlsgh~  360 (460)
T KOG0285|consen  347 LPEGEFLQNLSGHN  360 (460)
T ss_pred             CCccchhhcccccc
Confidence            84 44455666554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.9e-36  Score=239.03  Aligned_cols=239  Identities=22%  Similarity=0.355  Sum_probs=210.3

Q ss_pred             eeecceeeEeecc---cCcEEEEeeCCCeEEEEecCCc----ceeeeecccccceeEEEEccCC-CeEEEEecCCCCCce
Q 036585           13 SLELSEEILQSME---VGIYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESL   84 (304)
Q Consensus        13 ~~~~~~~~i~~~~---~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i   84 (304)
                      .+++|.+.+....   .|.+|+|++.|.++++|.++++    .++....+|...|.+++++..+ .+|++++.   |.++
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~---D~tl  436 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ---DCTL  436 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecC---CceE
Confidence            6788887765544   5789999999999999987543    3456678999999999998755 46777777   9999


Q ss_pred             EEEEccCcee-----e----eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCe
Q 036585           85 RLLSLHDNKY-----S----RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL  155 (304)
Q Consensus        85 ~vwd~~~~~~-----~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  155 (304)
                      ++|++...+.     .    .....|...|.+++.+|+.+++++||.|++.+||+++......++.              
T Consensus       437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs--------------  502 (775)
T KOG0319|consen  437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS--------------  502 (775)
T ss_pred             EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee--------------
Confidence            9999976221     1    1234699999999999999999999999999999999666655554              


Q ss_pred             EEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEE
Q 036585          156 VFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  235 (304)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  235 (304)
                                     +|...+.++.|+|..+.+++++.|++|++|.+.+..+++++.   +|...|..+.|-.+++.|++
T Consensus       503 ---------------GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e---GH~~aVlra~F~~~~~qliS  564 (775)
T KOG0319|consen  503 ---------------GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE---GHTSAVLRASFIRNGKQLIS  564 (775)
T ss_pred             ---------------CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec---CccceeEeeeeeeCCcEEEe
Confidence                           899999999999999999999999999999999999999999   89999999999999999999


Q ss_pred             ecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585          236 GSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       236 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      ++.||.|++|++++++++.++..|...|+++.-+|...+++||+.|  +.+|.
T Consensus       565 ~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  565 AGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             ccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            9999999999999999999999999999999999999999999999  67774

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9e-34  Score=249.51  Aligned_cols=261  Identities=17%  Similarity=0.260  Sum_probs=208.5

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCc----c----eeeeecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEc
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAA----T----CLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSL   89 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~   89 (304)
                      ..+.|+++|++||+|+.|+.|+||+..+.    .    +...+.. ...+.+++|++. +..|++++.   |+.|++||+
T Consensus       487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~---Dg~v~lWd~  562 (793)
T PLN00181        487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNF---EGVVQVWDV  562 (793)
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeC---CCeEEEEEC
Confidence            34778899999999999999999997532    1    1222333 457899999874 678888888   999999999


Q ss_pred             cCceeeeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEecc-ceeEe-cCCC--eEEEecCCCe
Q 036585           90 HDNKYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAY-DDQG--LVFGYEKGPL  164 (304)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~--~~~~~~~~~~  164 (304)
                      .+++.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||++++.....+..... ..+.+ .+++  .+.+..++.+
T Consensus       563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I  642 (793)
T PLN00181        563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKV  642 (793)
T ss_pred             CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeE
Confidence            99999999999999999999997 788999999999999999998877766654322 23344 2333  4556677788


Q ss_pred             EEEEec----------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC------ceeEEEEeCCCCCCcceEEEEcC
Q 036585          165 DIFSVG----------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------TLLSTYNVKPVSRNSTLEASFSP  228 (304)
Q Consensus       165 ~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~~~~~~~~~~i~~~~~s~  228 (304)
                      .+|++.          +|...|.++.|. ++.+|++++.|++|++||++.+      +.+..+.   +|...+..++|+|
T Consensus       643 ~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~---gh~~~i~~v~~s~  718 (793)
T PLN00181        643 YYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM---GHTNVKNFVGLSV  718 (793)
T ss_pred             EEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc---CCCCCeeEEEEcC
Confidence            888764          466789999997 6788999999999999999753      4555565   6888899999999


Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeeee-------------eccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585          229 EGMFVISGSGDGSVHAWSVRSGKEVASW-------------MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       229 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~  287 (304)
                      ++++|++|+.|+.|++|+.....++..+             ..+...|.+++|+|++..|++|+.+  ++||++
T Consensus       719 ~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        719 SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            9999999999999999998765443222             2344569999999999999999988  888875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-34  Score=206.31  Aligned_cols=251  Identities=15%  Similarity=0.154  Sum_probs=209.1

Q ss_pred             eeeecceeeE---eecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585           12 VSLELSEEIL---QSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   88 (304)
Q Consensus        12 ~~~~~~~~~i---~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd   88 (304)
                      +.+++|+..+   ....+|++|++++.|.+..||-..+|+.+-++.+|++.|.|++...+.+.+++|+.   |.++++||
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSA---D~t~kLWD   80 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSA---DQTAKLWD   80 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccc---cceeEEEE
Confidence            5677888775   45567999999999999999998899999999999999999999999999999999   99999999


Q ss_pred             ccCceeeeecccccccEEEEEEcCCCCEEEEccc-----CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCC
Q 036585           89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL-----DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGP  163 (304)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (304)
                      +++|+++..++ ...+|..+.|+++|++++....     .+.|.++|++.......-.                      
T Consensus        81 v~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~----------------------  137 (327)
T KOG0643|consen   81 VETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE----------------------  137 (327)
T ss_pred             cCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhccc----------------------
Confidence            99999999887 6678999999999998777653     4679999988543211100                      


Q ss_pred             eEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEE
Q 036585          164 LDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVH  243 (304)
Q Consensus       164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  243 (304)
                      -.+..+..+.+.++..-|.|-++++++|..+|.|..||.++++....-..  .|...|+.++++||..++++++.|.+-+
T Consensus       138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~--~h~~~Ind~q~s~d~T~FiT~s~Dttak  215 (327)
T KOG0643|consen  138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE--EHSSKINDLQFSRDRTYFITGSKDTTAK  215 (327)
T ss_pred             CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh--hhccccccccccCCcceEEecccCccce
Confidence            01122234557899999999999999999999999999999865543322  5788999999999999999999999999


Q ss_pred             EEecCCCce-------------------------------------------------------eeeeeccCCCCceEEe
Q 036585          244 AWSVRSGKE-------------------------------------------------------VASWMSFDTEPPVIKW  268 (304)
Q Consensus       244 v~d~~~~~~-------------------------------------------------------~~~~~~~~~~i~~~~~  268 (304)
                      +||..+.+.                                                       +..+++|-+||++++|
T Consensus       216 l~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAf  295 (327)
T KOG0643|consen  216 LVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAF  295 (327)
T ss_pred             eeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEE
Confidence            999876442                                                       2234688899999999


Q ss_pred             CCCCcEEEEecCc--eEEeccCCc
Q 036585          269 APGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       269 ~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      +|+|+..++|++|  +++..++.+
T Consensus       296 hPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  296 HPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             CCCCcccccCCCCceEEEEEeccc
Confidence            9999999999999  888877654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.2e-35  Score=238.74  Aligned_cols=267  Identities=16%  Similarity=0.216  Sum_probs=222.0

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      .+.|+|.+.++++|+.|-.|+||++++.+++.++.+|-+-|..+.|++.-..+++++.   |.+|+||+..+++++..+.
T Consensus        56 gv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASD---DQTIrIWNwqsr~~iavlt  132 (1202)
T KOG0292|consen   56 GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASD---DQTIRIWNWQSRKCIAVLT  132 (1202)
T ss_pred             eeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccC---CCeEEEEeccCCceEEEEe
Confidence            4678899999999999999999999999999999999999999999999999999999   9999999999999999999


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEec-CCCeEEEecCCCeEEEEecCCCCCceE
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD-DQGLVFGYEKGPLDIFSVGGDISDANV  178 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~  178 (304)
                      +|...|.|..|+|....++++|-|.+|++||+..-+....-...-...+... .+..++ .....+.-+.+++|...|+-
T Consensus       133 GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLf-g~~DaVVK~VLEGHDRGVNw  211 (1202)
T KOG0292|consen  133 GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLF-GQTDAVVKHVLEGHDRGVNW  211 (1202)
T ss_pred             cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhc-CCcCeeeeeeecccccccce
Confidence            9999999999999999999999999999999864332211110000000000 111111 22234456778999999999


Q ss_pred             EEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec
Q 036585          179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS  258 (304)
Q Consensus       179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  258 (304)
                      ++|+|.-.++++|+.|..|++|.+...+ ......-.+|.+.|.++-|+|..+++++.++|++|+|||+...+.+.+++.
T Consensus       212 aAfhpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr  290 (1202)
T KOG0292|consen  212 AAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR  290 (1202)
T ss_pred             EEecCCcceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec
Confidence            9999999999999999999999986433 333333347999999999999999999999999999999999999999987


Q ss_pred             cCCCCceEEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585          259 FDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSK  291 (304)
Q Consensus       259 ~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~  291 (304)
                      .....+.++-+|..++++.|.+. +.+|.++.++
T Consensus       291 endRFW~laahP~lNLfAAgHDsGm~VFkleREr  324 (1202)
T KOG0292|consen  291 ENDRFWILAAHPELNLFAAGHDSGMIVFKLERER  324 (1202)
T ss_pred             cCCeEEEEEecCCcceeeeecCCceEEEEEcccC
Confidence            78899999999999999988877 7888777554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.5e-36  Score=223.31  Aligned_cols=237  Identities=18%  Similarity=0.280  Sum_probs=205.6

Q ss_pred             cceeeeecceeeEeeccc-CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585            9 EDKVSLELSEEILQSMEV-GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus         9 ~~~~~~~~~~~~i~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      +....+.+|.+.+.+... .+.|++|+.|.+|+|||+++++++.++-+|...|..+.|+  ..++++++.   |.++.+|
T Consensus       228 ~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSk---DrsiaVW  302 (499)
T KOG0281|consen  228 ECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSK---DRSIAVW  302 (499)
T ss_pred             HHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecC---CceeEEE
Confidence            345567889998888875 6788999999999999999999999999999999999995  668999998   9999999


Q ss_pred             EccCce---eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585           88 SLHDNK---YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL  164 (304)
Q Consensus        88 d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (304)
                      |+....   +.+.+.+|...|..+.|+  .+++++++.|.+|++|++.+...++.+.                       
T Consensus       303 dm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-----------------------  357 (499)
T KOG0281|consen  303 DMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-----------------------  357 (499)
T ss_pred             eccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-----------------------
Confidence            998754   456678999999999995  5699999999999999999998887775                       


Q ss_pred             EEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEE
Q 036585          165 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHA  244 (304)
Q Consensus       165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v  244 (304)
                            +|...|-|+.+  .++++++|+.|.+|++||+..|.++..++   +|+.-|.++.|  |.+.+++|+.||.|+|
T Consensus       358 ------gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe---GHEeLvRciRF--d~krIVSGaYDGkikv  424 (499)
T KOG0281|consen  358 ------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DNKRIVSGAYDGKIKV  424 (499)
T ss_pred             ------cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh---chHHhhhheee--cCceeeeccccceEEE
Confidence                  67888888888  68999999999999999999999999999   89999999999  5678999999999999


Q ss_pred             EecCCCc---------eeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          245 WSVRSGK---------EVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       245 ~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      ||+..+.         ++..+..|.+.|..+.|  |...+++++.|  |.||++.-.
T Consensus       425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             EecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence            9997653         34555779999999999  55677777766  999998543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=7.5e-36  Score=224.78  Aligned_cols=267  Identities=22%  Similarity=0.349  Sum_probs=225.5

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      .-..+.|.++...|++|+.|..|++|++...+  .+.++.+..++++.+.|.++++++++++.   |+.+++|++.+.+.
T Consensus       177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~---d~~~r~Wnvd~~r~  253 (459)
T KOG0288|consen  177 EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN---DKNLRLWNVDSLRL  253 (459)
T ss_pred             ccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC---CCceeeeeccchhh
Confidence            34568888888999999999999999987665  67788888899999999999999999998   99999999999999


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec-cceeEecCCCeEEEecCCCeEEEEecC--
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFGYEKGPLDIFSVGG--  171 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--  171 (304)
                      ..++.+|++.|+++.|......+++|+.|.+|+.||+....+.....+.. ..-+...+...+-+-.++.++.|+...  
T Consensus       254 ~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~  333 (459)
T KOG0288|consen  254 RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSAD  333 (459)
T ss_pred             hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCc
Confidence            99999999999999999877779999999999999999988776654322 223333344444555677788888653  


Q ss_pred             ------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC-CCCcceEEEEcCCCcEEEEecCCCcEEE
Q 036585          172 ------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-SRNSTLEASFSPEGMFVISGSGDGSVHA  244 (304)
Q Consensus       172 ------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~v  244 (304)
                            -.+.|+++..++++..+++++.|.++.+.|+++.+....+..... .....+.+.|||++.|+++|+.||.|+|
T Consensus       334 ~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i  413 (459)
T KOG0288|consen  334 KTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI  413 (459)
T ss_pred             eeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE
Confidence                  236899999999999999999999999999999998888763211 2345888999999999999999999999


Q ss_pred             EecCCCceeeeeeccCC--CCceEEeCCCCcEEEEecCc--eEEec
Q 036585          245 WSVRSGKEVASWMSFDT--EPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       245 ~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      |++.++++...+.....  .|++++|+|.|..|++++.+  +.+|.
T Consensus       414 W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  414 WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            99999999887755444  59999999999999999998  88883

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.3e-35  Score=239.09  Aligned_cols=244  Identities=17%  Similarity=0.254  Sum_probs=218.2

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      .++|+|...+++++-..|.|++||.+-+.++..+..|.++|..++|+|.+..+++|+.   |..|+||+..+.+++.++.
T Consensus        14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGD---DykIkVWnYk~rrclftL~   90 (1202)
T KOG0292|consen   14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGD---DYKIKVWNYKTRRCLFTLL   90 (1202)
T ss_pred             ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCC---ccEEEEEecccceehhhhc
Confidence            4789999999999999999999999999999999999999999999999999999999   9999999999999999999


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV  179 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  179 (304)
                      +|-+.|..+.|++.-.+++++|.|.+|+||+..+.+++..+.                             +|...|.|.
T Consensus        91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-----------------------------GHnHYVMcA  141 (1202)
T KOG0292|consen   91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-----------------------------GHNHYVMCA  141 (1202)
T ss_pred             cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-----------------------------cCceEEEee
Confidence            999999999999999999999999999999999999987776                             788899999


Q ss_pred             EEecCCcEEEEeeCCCeEEEEEcCCCc---------------------------eeEEEEeCCCCCCcceEEEEcCCCcE
Q 036585          180 KFSNDGRLMLLTTMEGHIHVLDSFRGT---------------------------LLSTYNVKPVSRNSTLEASFSPEGMF  232 (304)
Q Consensus       180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~---------------------------~~~~~~~~~~~~~~i~~~~~s~~~~~  232 (304)
                      +|+|....+++++.|.+|++||+..-+                           .+..+ ...+|...|+-++|+|.-..
T Consensus       142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~-VLEGHDRGVNwaAfhpTlpl  220 (1202)
T KOG0292|consen  142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH-VLEGHDRGVNWAAFHPTLPL  220 (1202)
T ss_pred             ccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee-eecccccccceEEecCCcce
Confidence            999999999999999999999974211                           01111 12378899999999999999


Q ss_pred             EEEecCCCcEEEEecCCCce--eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc-ccccc
Q 036585          233 VISGSGDGSVHAWSVRSGKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK-LGAYV  296 (304)
Q Consensus       233 l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~-~~~~~  296 (304)
                      +++|+.|..|++|.+...+.  +.+..+|.+.|+++-|+|...++++.|+|  ++||+.+.++ +++++
T Consensus       221 iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr  289 (1202)
T KOG0292|consen  221 IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR  289 (1202)
T ss_pred             EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence            99999999999999976553  56678999999999999999999999999  9999997654 44443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.1e-34  Score=207.40  Aligned_cols=260  Identities=16%  Similarity=0.215  Sum_probs=212.9

Q ss_pred             eeeEeecc-cCcEEEEeeCCCeEEEEecCC-ccee-eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           18 EEILQSME-VGIYLVTASDDESIRLYDVTA-ATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        18 ~~~i~~~~-~~~~l~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      ...++|+| ...+++.+|+|++||+|+++. +... +....|.++|.+++|+.+|..+++++.   |+.+++||+.+++ 
T Consensus        30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~---Dk~~k~wDL~S~Q-  105 (347)
T KOG0647|consen   30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC---DKQAKLWDLASGQ-  105 (347)
T ss_pred             hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc---CCceEEEEccCCC-
Confidence            34578888 466777999999999999986 3332 445578899999999999999999999   9999999999995 


Q ss_pred             eeecccccccEEEEEEcCCCC--EEEEcccCCeEEEEeCCcceeeceEEEeccce-eEecCCCeEEEecCCCeEEEEecC
Q 036585           95 SRYFKGHHDRVVLLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDDQGLVFGYEKGPLDIFSVGG  171 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  171 (304)
                      +..+..|.++|.++.|-+...  .|++|+.|++|+.||++...++..+.+++... +.....-.+++..+..+.++++++
T Consensus       106 ~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n  185 (347)
T KOG0647|consen  106 VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLEN  185 (347)
T ss_pred             eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCC
Confidence            556777999999999987655  89999999999999999999888887766553 333444566777888888888865


Q ss_pred             C-----------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC--ceeEEEEeCCC---C---CCcceEEEEcCCCcE
Q 036585          172 D-----------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG--TLLSTYNVKPV---S---RNSTLEASFSPEGMF  232 (304)
Q Consensus       172 ~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~---~---~~~i~~~~~s~~~~~  232 (304)
                      .           .-.+++++..++....+.|+-+|.+.+..+..+  +.-.+|+.+..   .   -..|++++|+|.-..
T Consensus       186 ~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt  265 (347)
T KOG0647|consen  186 PPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT  265 (347)
T ss_pred             CcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce
Confidence            3           245789999999988999999999999988876  44455554321   1   235788999999999


Q ss_pred             EEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEe-cCc
Q 036585          233 VISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTG-SSE  281 (304)
Q Consensus       233 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~d  281 (304)
                      |++++.||+..+||-.....++....|..+|++..|+.+|.++|-+ +.|
T Consensus       266 lvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  266 LVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             EEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence            9999999999999988888888888999999999999999988755 444

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=6.9e-35  Score=212.54  Aligned_cols=239  Identities=20%  Similarity=0.350  Sum_probs=201.9

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCC------------------cceeeeecccccceeEEEEccCCCeEEEEecCC
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTA------------------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG   79 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   79 (304)
                      ..+-.+++||.++|+|+.|.+|+|.|++.                  -..++++..|..+|+++.|+|....|++++.  
T Consensus       115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr--  192 (430)
T KOG0640|consen  115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR--  192 (430)
T ss_pred             eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC--
Confidence            34567899999999999999999999861                  1346788899999999999999999999999  


Q ss_pred             CCCceEEEEccCcee---eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeE
Q 036585           80 WDESLRLLSLHDNKY---SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV  156 (304)
Q Consensus        80 ~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (304)
                       |++|+++|+.....   .+.++ ...+|.++.|+|.|.+++.|....++++||+++.++...-...             
T Consensus       193 -D~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd-------------  257 (430)
T KOG0640|consen  193 -DNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD-------------  257 (430)
T ss_pred             -CCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc-------------
Confidence             99999999976432   23333 5678999999999999999999999999999998775433211             


Q ss_pred             EEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585          157 FGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                                   ..|...|+++.+++.+++.++++.||.|++||--+++++.++.... ....|.+..|..+++|+++.
T Consensus       258 -------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~kyiLsS  323 (430)
T KOG0640|consen  258 -------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNGKYILSS  323 (430)
T ss_pred             -------------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCCeEEeec
Confidence                         2588899999999999999999999999999999999999887542 34678999999999999999


Q ss_pred             cCCCcEEEEecCCCceeeee-------------------------------------------------eccCCCCceEE
Q 036585          237 SGDGSVHAWSVRSGKEVASW-------------------------------------------------MSFDTEPPVIK  267 (304)
Q Consensus       237 ~~dg~i~v~d~~~~~~~~~~-------------------------------------------------~~~~~~i~~~~  267 (304)
                      +.|..+++|.+.+++++..+                                                 .+|.+.++.+.
T Consensus       324 G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~  403 (430)
T KOG0640|consen  324 GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIV  403 (430)
T ss_pred             CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEE
Confidence            99999999999887754433                                                 26778888888


Q ss_pred             eCCCCcEEEEecCc--eEEecc
Q 036585          268 WAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       268 ~~~~~~~l~s~~~d--~~iw~~  287 (304)
                      -+|.+..+++++.|  .++|--
T Consensus       404 HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  404 HSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             eCCCCCceeeecccceeeeeee
Confidence            99999999999998  888853

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.6e-34  Score=214.32  Aligned_cols=263  Identities=23%  Similarity=0.340  Sum_probs=209.5

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCC---eEEEEecCCCCCceEEEEccCcee----eeecc
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLLSLHDNKY----SRYFK   99 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~~~d~~i~vwd~~~~~~----~~~~~   99 (304)
                      ++.|++|++||.+++||.. |+...++.+|.+++..++|.....   .+++++.   |.++++|..+.++.    ++.-+
T Consensus       115 ~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~---Dqtl~Lw~~~~~~~~~~~~~~~~  190 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM---DQTLRLWKWNVGENKVKALKVCR  190 (423)
T ss_pred             CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecC---CceEEEEEecCchhhhhHHhHhc
Confidence            7899999999999999964 899999999999999888865444   4889988   99999999987753    33345


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV  179 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  179 (304)
                      +|...|.++...+++..+++|+.|.++++|+..+... ..+.....   .-..+...-........+..+.+|..+|.++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~---~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V  266 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE-DELESSSN---RRRKKQKREKEGGTRTPLVTLEGHTEPVSSV  266 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCcc-ccccccch---hhhhhhhhhhcccccCceEEecccccceeeE
Confidence            9999999999999999999999999999999332211 11110000   0000001111222344566788999999999


Q ss_pred             EEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc---eeeee
Q 036585          180 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK---EVASW  256 (304)
Q Consensus       180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~  256 (304)
                      .|++ ...+++++.|.+|+.||+.++....++.    ....++++.++|..++|++|+.|..|++||.+++.   ...++
T Consensus       267 ~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~----~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~  341 (423)
T KOG0313|consen  267 VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT----TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL  341 (423)
T ss_pred             EEcC-CCceEeecccceEEEEEeecccceeeee----cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee
Confidence            9998 6679999999999999999999998887    66789999999999999999999999999998754   35678


Q ss_pred             eccCCCCceEEeCCCC-cEEEEecCc--eEEeccCCcc--ccccccCCCCC
Q 036585          257 MSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIPDLSK--LGAYVGRNRGC  302 (304)
Q Consensus       257 ~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~~~~~--~~~~~~~~~g~  302 (304)
                      .+|.+.|.++.|+|.. .+|++++.|  +++||....+  +..+.+|++-+
T Consensus       342 ~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv  392 (423)
T KOG0313|consen  342 IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV  392 (423)
T ss_pred             ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceE
Confidence            9999999999999965 578899999  9999997655  66777776543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.3e-34  Score=212.77  Aligned_cols=262  Identities=15%  Similarity=0.241  Sum_probs=205.8

Q ss_pred             cceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585            9 EDKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   85 (304)
Q Consensus         9 ~~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~   85 (304)
                      ...+.+..|...   +...|+.++++||+.|..-.+|+..++.....+.+|+..|.++.|+.++.+|++|.-   +|.|+
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdm---sG~v~  131 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDM---SGKVL  131 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCC---CccEE
Confidence            345556666654   567788999999999999999999999999999999999999999999999999998   99999


Q ss_pred             EEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                      ||+..++.....+......+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.                        
T Consensus       132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~------------------------  187 (399)
T KOG0296|consen  132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS------------------------  187 (399)
T ss_pred             EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec------------------------
Confidence            99999998877776666788889999999999999999999999998876555554                        


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC-------------------------------
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-------------------------------  214 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-------------------------------  214 (304)
                           +|..++++=.|.|+|+.++++..||+|++||+.+++++..+...                               
T Consensus       188 -----Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~  262 (399)
T KOG0296|consen  188 -----GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN  262 (399)
T ss_pred             -----CCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcc
Confidence                 45566666666666666666666666666666666655554310                               


Q ss_pred             -----------------CCCCCcceE---EEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcE
Q 036585          215 -----------------PVSRNSTLE---ASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLM  274 (304)
Q Consensus       215 -----------------~~~~~~i~~---~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  274 (304)
                                       +.+...+.+   +.++..=.+.|+|+-||+|.|||+...++.... .|..+|..+.|-+ ..+
T Consensus       263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~  340 (399)
T KOG0296|consen  263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDY  340 (399)
T ss_pred             ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cch
Confidence                             011122223   333334467889999999999999887765554 5889999999999 778


Q ss_pred             EEEecCc--eEEeccCCcc-ccccccCCCCCCC
Q 036585          275 FVTGSSE--LSFWIPDLSK-LGAYVGRNRGCMD  304 (304)
Q Consensus       275 l~s~~~d--~~iw~~~~~~-~~~~~~~~~g~~d  304 (304)
                      |++++.+  ++.|+..... +..|.||..+++|
T Consensus       341 l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~  373 (399)
T KOG0296|consen  341 LLTACANGKVRQWDARTGQLKFTYTGHQMGILD  373 (399)
T ss_pred             heeeccCceEEeeeccccceEEEEecCchheeE
Confidence            8888888  8889886655 5689999988865

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.7e-35  Score=208.35  Aligned_cols=244  Identities=20%  Similarity=0.362  Sum_probs=214.9

Q ss_pred             ceeeeecceeeEeec---ccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           10 DKVSLELSEEILQSM---EVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        10 ~~~~~~~~~~~i~~~---~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      -.-++++|.+++-..   .+....|+++.|-+-+|||.-+|..++.+. |+.-|..++|+.|.++|++|+.   +..++|
T Consensus        51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~---ekllrv  126 (334)
T KOG0278|consen   51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQ---EKLLRV  126 (334)
T ss_pred             cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccch---HHHhhh
Confidence            345678888876543   234567899999999999999999998886 7778999999999999999998   999999


Q ss_pred             EEccCc-eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           87 LSLHDN-KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        87 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                      ||++.. .+...+.+|++.|..+.|....+.+++++.|++||+||.+++..++.+...                      
T Consensus       127 fdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~----------------------  184 (334)
T KOG0278|consen  127 FDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN----------------------  184 (334)
T ss_pred             hhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC----------------------
Confidence            999875 467888999999999999998889999999999999999999998888643                      


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEE
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAW  245 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~  245 (304)
                              ..|+++.++++|+++.++ ..+.|.+||..+-.+++.+.    ....|.+..++|+...+++|++|..++.|
T Consensus       185 --------s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k----~P~nV~SASL~P~k~~fVaGged~~~~kf  251 (334)
T KOG0278|consen  185 --------SPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK----MPCNVESASLHPKKEFFVAGGEDFKVYKF  251 (334)
T ss_pred             --------CCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc----CccccccccccCCCceEEecCcceEEEEE
Confidence                    678999999999966554 56789999999999998887    56788999999999999999999999999


Q ss_pred             ecCCCceeeee-eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585          246 SVRSGKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       246 d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~  292 (304)
                      |..+++.+..+ ++|.++|.|+.|+|+|...++||.|  ++||.....+.
T Consensus       252 Dy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  252 DYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             eccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            99999999886 8999999999999999999999999  99998766554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-34  Score=228.83  Aligned_cols=225  Identities=24%  Similarity=0.300  Sum_probs=205.4

Q ss_pred             eecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc-eeeeeccc
Q 036585           22 QSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-KYSRYFKG  100 (304)
Q Consensus        22 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~-~~~~~~~~  100 (304)
                      .+.+--+++++|+.|..||||++++++.+..+..|.+-|.+++.+|..+++++++.   |-.|++||.+.+ .+.+++.+
T Consensus        62 kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSD---Dm~iKlW~we~~wa~~qtfeG  138 (794)
T KOG0276|consen   62 KFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSD---DMTIKLWDWENEWACEQTFEG  138 (794)
T ss_pred             eeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCC---ccEEEEeeccCceeeeeEEcC
Confidence            34455789999999999999999999999999999999999999999999999999   999999999875 67889999


Q ss_pred             ccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585          101 HHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV  179 (304)
Q Consensus       101 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  179 (304)
                      |...|.+++|+| |.+.+++++-|++|++|.+.+..+..++.                             +|...|+++
T Consensus       139 H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-----------------------------gHekGVN~V  189 (794)
T KOG0276|consen  139 HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-----------------------------GHEKGVNCV  189 (794)
T ss_pred             cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee-----------------------------ccccCcceE
Confidence            999999999999 67799999999999999998877655544                             788999999


Q ss_pred             EEecCC--cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee
Q 036585          180 KFSNDG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM  257 (304)
Q Consensus       180 ~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  257 (304)
                      .|-+-|  .+|++|+.|..|++||.++.+++.++.   +|...|..+.|+|.-..+++|++||+++||+..+.+....+.
T Consensus       190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe---GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn  266 (794)
T KOG0276|consen  190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE---GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN  266 (794)
T ss_pred             EeccCCCcceEEecCCCceEEEeecchHHHHHHhh---cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh
Confidence            998754  699999999999999999999999999   899999999999999999999999999999999988888887


Q ss_pred             ccCCCCceEEeCCCCcEEEEecCc
Q 036585          258 SFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       258 ~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      -.-.+++|++-.+.++.++.|.++
T Consensus       267 ~gleRvW~I~~~k~~~~i~vG~De  290 (794)
T KOG0276|consen  267 YGLERVWCIAAHKGDGKIAVGFDE  290 (794)
T ss_pred             cCCceEEEEeecCCCCeEEEeccC
Confidence            777889999988888888888766

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-33  Score=226.86  Aligned_cols=270  Identities=17%  Similarity=0.306  Sum_probs=230.2

Q ss_pred             eeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           11 KVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        11 ~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ...+.+|..-   +.++.+...+++|+ .+++++|+..+.++++++...  .+.+..|.|.++++++|..   .|.+.+|
T Consensus       366 ~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k---~Gel~vf  439 (888)
T KOG0306|consen  366 NIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTK---NGELQVF  439 (888)
T ss_pred             eeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEecc---CCceEEE
Confidence            3555666554   44555566666665 468999999999999999755  7889999999999999998   9999999


Q ss_pred             EccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce-----eec--------eEEE-eccceeEecCC
Q 036585           88 SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK-----CQG--------LLRV-QGRPAAAYDDQ  153 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~--------~~~~-~~~~~~~~~~~  153 (304)
                      |+.+...+.+.+.|.+.|++++.+||+..+++|+.|.+|++||..--.     ..+        .+.. ....++.++|+
T Consensus       440 dlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd  519 (888)
T KOG0306|consen  440 DLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD  519 (888)
T ss_pred             EeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC
Confidence            999999999999999999999999999999999999999999975221     111        1222 22346788999


Q ss_pred             CeEE--EecCCCeEEE---------EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcce
Q 036585          154 GLVF--GYEKGPLDIF---------SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL  222 (304)
Q Consensus       154 ~~~~--~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~  222 (304)
                      +.++  +.-+..+++|         .+.+|.-+|.++..+||++.+++|+.|..|++|-+.-|.+-+.+-   +|...|+
T Consensus       520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f---AHdDSvm  596 (888)
T KOG0306|consen  520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF---AHDDSVM  596 (888)
T ss_pred             CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh---cccCcee
Confidence            8665  4446666665         455899999999999999999999999999999999999988888   7999999


Q ss_pred             EEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          223 EASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       223 ~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      ++.|-|....+.+++.|+.|+-||-...+.+..+.+|...|+|++.+|+|.+++++|.|  +++|.-.-
T Consensus       597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999  99996543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-34  Score=203.75  Aligned_cols=233  Identities=19%  Similarity=0.263  Sum_probs=194.3

Q ss_pred             Eeeccc-CcEEEEeeCCCeEEEEecC-CcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           21 LQSMEV-GIYLVTASDDESIRLYDVT-AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        21 i~~~~~-~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      +.+++. .+.+++++.||++++||.. ...+++.++.|...|.++.|++..+..+..++  ||++|++|+..-++.++++
T Consensus        66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS--WD~TiKLW~~~r~~Sv~Tf  143 (311)
T KOG0277|consen   66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS--WDGTIKLWDPNRPNSVQTF  143 (311)
T ss_pred             eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec--cCCceEeecCCCCcceEee
Confidence            566665 5788999999999999965 34678999999999999999996655444442  6999999999999999999


Q ss_pred             ccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585           99 KGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus        99 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      .+|...|+...|+| .++++++++.|+++++||++.......+.                             .|...+.
T Consensus       144 ~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-----------------------------ah~~Eil  194 (311)
T KOG0277|consen  144 NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-----------------------------AHNSEIL  194 (311)
T ss_pred             cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-----------------------------eccceeE
Confidence            99999999999999 67799999999999999998654333333                             4667889


Q ss_pred             EEEEec-CCcEEEEeeCCCeEEEEEcCCCc-eeEEEEeCCCCCCcceEEEEcCC-CcEEEEecCCCcEEEEecCCC-cee
Q 036585          178 VVKFSN-DGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSG-KEV  253 (304)
Q Consensus       178 ~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~-~~~  253 (304)
                      ++.|+. +...+++|+.|+.|+.||+++-+ ++..+.   +|.-.|..++|||. ...||+++.|-+++|||.... ..+
T Consensus       195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~---gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~  271 (311)
T KOG0277|consen  195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN---GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI  271 (311)
T ss_pred             eecccccCCcEEEecCCCceEEEEehhhccccceeec---CCceEEEEEecCcchhhHhhhccccceEEecccccchhhh
Confidence            999987 56788899999999999998754 455555   79999999999994 468999999999999999744 446


Q ss_pred             eeeeccCCCCceEEeCC-CCcEEEEecCc--eEEecc
Q 036585          254 ASWMSFDTEPPVIKWAP-GSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       254 ~~~~~~~~~i~~~~~~~-~~~~l~s~~~d--~~iw~~  287 (304)
                      .+...|..-+..+.|++ +..++|+++.|  +.||+.
T Consensus       272 e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  272 ETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            66777888899999998 56799999999  888875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.7e-34  Score=200.80  Aligned_cols=240  Identities=20%  Similarity=0.281  Sum_probs=195.3

Q ss_pred             cceeeEeeccc-CcEEEEee-------CCCeEEEEecCCcceeeeecc--cccceeEEEEccCCCe-EEEEecCCCCCce
Q 036585           16 LSEEILQSMEV-GIYLVTAS-------DDESIRLYDVTAATCLKTINS--KKYGVDLVCFTSHPTT-VIYSSKNGWDESL   84 (304)
Q Consensus        16 ~~~~~i~~~~~-~~~l~~~~-------~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~-l~~~~~~~~d~~i   84 (304)
                      .|...++++|. .++||.+.       ..|++.|.++...+-+.....  -.+.+..++|+++... +++++.   ||++
T Consensus         9 f~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G---DGSL   85 (311)
T KOG0277|consen    9 FHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASG---DGSL   85 (311)
T ss_pred             cccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEec---CceE
Confidence            46677899987 44444442       368899999875554444432  3468999999997654 445554   9999


Q ss_pred             EEEEccC-ceeeeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585           85 RLLSLHD-NKYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG  162 (304)
Q Consensus        85 ~vwd~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (304)
                      ++||+.. ..+++.++.|...|.++.|++ ++..+++++.|++|++|+...+..+.++.                     
T Consensus        86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~---------------------  144 (311)
T KOG0277|consen   86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN---------------------  144 (311)
T ss_pred             EEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec---------------------
Confidence            9999754 358899999999999999998 56678888999999999998877776654                     


Q ss_pred             CeEEEEecCCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCC
Q 036585          163 PLDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDG  240 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg  240 (304)
                              +|...|...+|+| ..+.+++++.||++++||++..-....+.   .|...+.++.|+. +.+.|++|+.|+
T Consensus       145 --------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~---ah~~Eil~cdw~ky~~~vl~Tg~vd~  213 (311)
T KOG0277|consen  145 --------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE---AHNSEILCCDWSKYNHNVLATGGVDN  213 (311)
T ss_pred             --------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE---eccceeEeecccccCCcEEEecCCCc
Confidence                    6788899999999 47889999999999999998755444466   6888999999998 667899999999


Q ss_pred             cEEEEecCCC-ceeeeeeccCCCCceEEeCCCC-cEEEEecCc--eEEeccCCc
Q 036585          241 SVHAWSVRSG-KEVASWMSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       241 ~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~~~~  290 (304)
                      .|++||+++. .++.++.+|.-.|+.++|||.. ..|++++.|  ++||++..+
T Consensus       214 ~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  214 LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             eEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence            9999999885 4588889999999999999964 689999999  999999743

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=2.1e-32  Score=225.60  Aligned_cols=224  Identities=14%  Similarity=0.243  Sum_probs=178.0

Q ss_pred             eeCCCeEEEEecCCcceeeeecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEccCce--------eeeecccccc
Q 036585           33 ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNK--------YSRYFKGHHD  103 (304)
Q Consensus        33 ~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~~~~~--------~~~~~~~~~~  103 (304)
                      |+.++.+++|+......+..+.+|...|.+++|+|+ +..|++++.   |+.|++||+.++.        ++..+.+|..
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~---DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSE---DLTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCCccccccccceEEeecCCC
Confidence            567889999998888888899999999999999997 789999998   9999999997642        3446778999


Q ss_pred             cEEEEEEcCCCCE-EEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEe
Q 036585          104 RVVLLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS  182 (304)
Q Consensus       104 ~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  182 (304)
                      .|.+++|+|++.. +++++.|++|++||+++++....+.                              +...|.+++|+
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~------------------------------~~~~V~Slsws  176 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN------------------------------MPKKLSSLKWN  176 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe------------------------------cCCcEEEEEEC
Confidence            9999999998875 5788999999999999876544332                              33568999999


Q ss_pred             cCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcce-----EEEEcCCCcEEEEecCCC----cEEEEecCC-Cce
Q 036585          183 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-----EASFSPEGMFVISGSGDG----SVHAWSVRS-GKE  252 (304)
Q Consensus       183 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~-----~~~~s~~~~~l~~~~~dg----~i~v~d~~~-~~~  252 (304)
                      |+|.+|++++.|+.|++||+++++.+..+.   .|.+.+.     ...|++++.+|++++.|+    .|+|||+++ .++
T Consensus       177 pdG~lLat~s~D~~IrIwD~Rsg~~i~tl~---gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p  253 (568)
T PTZ00420        177 IKGNLLSGTCVGKHMHIIDPRKQEIASSFH---IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA  253 (568)
T ss_pred             CCCCEEEEEecCCEEEEEECCCCcEEEEEe---cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence            999999999999999999999999988887   4555433     234568999999887664    799999985 555


Q ss_pred             eeeee--ccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585          253 VASWM--SFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       253 ~~~~~--~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~  292 (304)
                      +..+.  .+.+.+......+++.++++|+.|  +++|++..+.+
T Consensus       254 l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~  297 (568)
T PTZ00420        254 LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI  297 (568)
T ss_pred             eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE
Confidence            55543  222333333345568889999888  99999976543

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=2.1e-32  Score=224.53  Aligned_cols=237  Identities=14%  Similarity=0.205  Sum_probs=184.2

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecCCccee-------------eeecccccceeEEEEcc-CCCeEEEEecCCCCCceEE
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVTAATCL-------------KTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~v   86 (304)
                      ....+++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++..|++++.   |++|++
T Consensus        26 ~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~---DgtIkI  102 (493)
T PTZ00421         26 STALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASE---DGTIMG  102 (493)
T ss_pred             ccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeC---CCEEEE
Confidence            344556566677766666667765433221             24678999999999999 7889999998   999999


Q ss_pred             EEccCc-------eeeeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585           87 LSLHDN-------KYSRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG  158 (304)
Q Consensus        87 wd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (304)
                      ||+.++       +++..+.+|...|.+++|+|++ ++|++++.|++|++||+++++....+                  
T Consensus       103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l------------------  164 (493)
T PTZ00421        103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI------------------  164 (493)
T ss_pred             EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE------------------
Confidence            999764       3466788999999999999975 69999999999999999987654433                  


Q ss_pred             ecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCc-ceEEEEcCCCcEEEEec
Q 036585          159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS-TLEASFSPEGMFVISGS  237 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~  237 (304)
                                 ..|...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.   .|... ...+.|.+++..+++++
T Consensus       165 -----------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~~~~~~w~~~~~~ivt~G  230 (493)
T PTZ00421        165 -----------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAKSQRCLWAKRKDLIITLG  230 (493)
T ss_pred             -----------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCcceEEEEcCCCCeEEEEe
Confidence                       2577789999999999999999999999999999999888777   45443 44678999887777654


Q ss_pred             ----CCCcEEEEecCCCce-eeeeecc-CCCCceEEeCCCCcEEEEecC-c--eEEeccCCccc
Q 036585          238 ----GDGSVHAWSVRSGKE-VASWMSF-DTEPPVIKWAPGSLMFVTGSS-E--LSFWIPDLSKL  292 (304)
Q Consensus       238 ----~dg~i~v~d~~~~~~-~~~~~~~-~~~i~~~~~~~~~~~l~s~~~-d--~~iw~~~~~~~  292 (304)
                          .|+.|++||+++... +.....+ ...+....|++++.+|++++. |  +++|++...++
T Consensus       231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        231 CSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             cCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence                478999999987543 3333323 334556678999999988874 5  99999876554

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.2e-33  Score=201.99  Aligned_cols=245  Identities=19%  Similarity=0.253  Sum_probs=208.6

Q ss_pred             eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc-CceeeeecccccccEEEEEEcCCCCEEEEcccCCeEE
Q 036585           49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL  127 (304)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  127 (304)
                      ++..+.+|++.|+.+.|+|+|..|++++.   |..|.+|++. ..+....+++|.+.|..+.|.++++.+++++.|.+++
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~---Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGS---DRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR  115 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCC---cceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence            45567899999999999999999999999   9999999964 3455677889999999999999999999999999999


Q ss_pred             EEeCCcceeeceEEEeccceeEecCCC-----eEEEecCCCeEEEEecC--------CCCCceEEEEecCCcEEEEeeCC
Q 036585          128 LWDQRAEKCQGLLRVQGRPAAAYDDQG-----LVFGYEKGPLDIFSVGG--------DISDANVVKFSNDGRLMLLTTME  194 (304)
Q Consensus       128 iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d  194 (304)
                      .||.++++....++.+....-+..|..     ...+.+++.+++|+++.        ...+++++.|..++..+.+|+-|
T Consensus       116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggId  195 (338)
T KOG0265|consen  116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGID  195 (338)
T ss_pred             EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeecccc
Confidence            999999999998887766554444432     33467789999999872        35688999999999999999999


Q ss_pred             CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC----ceeeeeeccCC----CCceE
Q 036585          195 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG----KEVASWMSFDT----EPPVI  266 (304)
Q Consensus       195 g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~----~i~~~  266 (304)
                      +.|++||++.+.....+.   +|..+|+.+..+|+|.++.+-+.|.++++||++..    +++..+.+|..    ....+
T Consensus       196 n~ikvWd~r~~d~~~~ls---Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c  272 (338)
T KOG0265|consen  196 NDIKVWDLRKNDGLYTLS---GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC  272 (338)
T ss_pred             CceeeeccccCcceEEee---cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence            999999999999999998   89999999999999999999999999999999753    33666665532    34567


Q ss_pred             EeCCCCcEEEEecCc--eEEeccCCc-cccccccCC
Q 036585          267 KWAPGSLMFVTGSSE--LSFWIPDLS-KLGAYVGRN  299 (304)
Q Consensus       267 ~~~~~~~~l~s~~~d--~~iw~~~~~-~~~~~~~~~  299 (304)
                      +|+|++..+..|+.|  +.+|+.... -+..+.||.
T Consensus       273 swsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~  308 (338)
T KOG0265|consen  273 SWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY  308 (338)
T ss_pred             eccCCCCccccccccceEEEeecccccEEEEcCCcc
Confidence            899999999999999  888888664 456667665

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5e-33  Score=220.86  Aligned_cols=237  Identities=16%  Similarity=0.228  Sum_probs=208.3

Q ss_pred             ecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecc-cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce
Q 036585           15 ELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   93 (304)
Q Consensus        15 ~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~   93 (304)
                      +.....+.++++|.+|++|..+|.|.|||..+.+.+..+.+ |...|.+++|.  +..+.+|+.   ++.|..+|++..+
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr---~~~I~~~dvR~~~  291 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSR---DGKILNHDVRISQ  291 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecC---CCcEEEEEEecch
Confidence            34455688999999999999999999999999999999998 99999999996  777888887   9999999999877


Q ss_pred             eeee-cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585           94 YSRY-FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD  172 (304)
Q Consensus        94 ~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (304)
                      .... +.+|...|..++|++++.++++|+.|+.+.|||.....+...+                             ..|
T Consensus       292 ~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~-----------------------------~~H  342 (484)
T KOG0305|consen  292 HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF-----------------------------TEH  342 (484)
T ss_pred             hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE-----------------------------ecc
Confidence            5554 8899999999999999999999999999999999555544333                             368


Q ss_pred             CCCceEEEEecC-CcEEEEe--eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe--cCCCcEEEEec
Q 036585          173 ISDANVVKFSND-GRLMLLT--TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG--SGDGSVHAWSV  247 (304)
Q Consensus       173 ~~~v~~~~~~~~-~~~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~v~d~  247 (304)
                      ...|.+++|+|- ..+||+|  +.|+.|++||..+++.+....    ....|..+.|++..+-|+++  ..++.|.||+.
T Consensus       343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd----tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~  418 (484)
T KOG0305|consen  343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD----TGSQVCSLIWSKKYKELLSTHGYSENQITLWKY  418 (484)
T ss_pred             ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc----cCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence            899999999994 5677775  469999999999999988886    77899999999988777665  46778999999


Q ss_pred             CCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          248 RSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       248 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      .+.+++..+.+|...|..++++|||..+++|+.|  +++|.+-.
T Consensus       419 ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  419 PSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             cccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            9999999999999999999999999999999999  99998743

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.1e-33  Score=212.60  Aligned_cols=227  Identities=20%  Similarity=0.262  Sum_probs=195.0

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      -.+.+-.||++||.|...|.|+|+|.++...++.+..|+.++..+.|+|+++.+++.+++  |+.+++||+.+......+
T Consensus        72 ~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD--d~v~k~~d~s~a~v~~~l  149 (487)
T KOG0310|consen   72 YSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD--DKVVKYWDLSTAYVQAEL  149 (487)
T ss_pred             eEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC--CceEEEEEcCCcEEEEEe
Confidence            346677789999999999999999988777889999999999999999977665555443  899999999998876688


Q ss_pred             ccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcce-eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585           99 KGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA  176 (304)
Q Consensus        99 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  176 (304)
                      .+|++.|.|.+|+| ++..+++|+.||+|++||++... .+..+                              .|..+|
T Consensus       150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el------------------------------nhg~pV  199 (487)
T KOG0310|consen  150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL------------------------------NHGCPV  199 (487)
T ss_pred             cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe------------------------------cCCCce
Confidence            99999999999999 45689999999999999999873 33333                              377899


Q ss_pred             eEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585          177 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       177 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      ..+.+-|.|..+++++.+ .+++||+.+|........  .|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+
T Consensus       200 e~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~  276 (487)
T KOG0310|consen  200 ESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMF--NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW  276 (487)
T ss_pred             eeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhh--cccceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence            999999999988887754 899999986654443331  48899999999999999999999999999999888988888


Q ss_pred             eccCCCCceEEeCCCCcEEEEecCc
Q 036585          257 MSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       257 ~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      . ..++|.+++.+|+++.++.|..+
T Consensus       277 ~-~~~pvLsiavs~dd~t~viGmsn  300 (487)
T KOG0310|consen  277 K-YPGPVLSIAVSPDDQTVVIGMSN  300 (487)
T ss_pred             e-cccceeeEEecCCCceEEEeccc
Confidence            5 67899999999999999999999

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=4.9e-33  Score=211.01  Aligned_cols=231  Identities=21%  Similarity=0.257  Sum_probs=207.4

Q ss_pred             ccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc
Q 036585           25 EVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR  104 (304)
Q Consensus        25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  104 (304)
                      +..+.+++|+.|..+.++|...++.+..+.||...|+.+.++|+...+++++.   |..|+||.............|..+
T Consensus       229 ~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSa---d~~i~vws~~~~s~~~~~~~h~~~  305 (506)
T KOG0289|consen  229 PSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASA---DEIIRVWSVPLSSEPTSSRPHEEP  305 (506)
T ss_pred             CCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCC---cceEEeeccccccCcccccccccc
Confidence            33588999999999999999999999999999999999999999999999998   999999999888888888899999


Q ss_pred             EEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC
Q 036585          105 VVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND  184 (304)
Q Consensus       105 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  184 (304)
                      |+.+..+|.|.||++++.|++..+.|++++.........                           ...-.+++.+|+||
T Consensus       306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---------------------------~s~v~~ts~~fHpD  358 (506)
T KOG0289|consen  306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE---------------------------TSDVEYTSAAFHPD  358 (506)
T ss_pred             ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec---------------------------cccceeEEeeEcCC
Confidence            999999999999999999999999999999876655422                           12235789999999


Q ss_pred             CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeecc-CCCC
Q 036585          185 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF-DTEP  263 (304)
Q Consensus       185 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~i  263 (304)
                      |..|.+|..||.+++||+.++.....|.   +|.++|..++|+.+|-||++++.|+.|++||++..+...++... ..++
T Consensus       359 gLifgtgt~d~~vkiwdlks~~~~a~Fp---ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v  435 (506)
T KOG0289|consen  359 GLIFGTGTPDGVVKIWDLKSQTNVAKFP---GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEV  435 (506)
T ss_pred             ceEEeccCCCceEEEEEcCCccccccCC---CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccc
Confidence            9999999999999999999998777777   79999999999999999999999999999999988877777433 2379


Q ss_pred             ceEEeCCCCcEEEEecCceEEeccC
Q 036585          264 PVIKWAPGSLMFVTGSSELSFWIPD  288 (304)
Q Consensus       264 ~~~~~~~~~~~l~s~~~d~~iw~~~  288 (304)
                      .++.|.+.|.+|+.++.+++||.+.
T Consensus       436 ~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  436 NSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             eeEEEcCCCCeEEeecceeEEEEEe
Confidence            9999999999999999998877665

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=8.7e-35  Score=223.12  Aligned_cols=220  Identities=22%  Similarity=0.386  Sum_probs=190.1

Q ss_pred             cceeeeecccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEccC-ceeeeecccccccEEEEEEcCCCCEEEEcccCC
Q 036585           47 ATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHD-NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDR  124 (304)
Q Consensus        47 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  124 (304)
                      .+.+.++.+|+..|.++.|.| .+.+|++++.   |+.|+||++.. +++++++.+|..+|..++|+++|..|++++.|+
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gm---D~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGM---DGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCC---CceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence            356788999999999999999 7888888888   99999999987 889999999999999999999999999999999


Q ss_pred             eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcC
Q 036585          125 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSF  203 (304)
Q Consensus       125 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~  203 (304)
                      .+++||++++++...+...                              ..++++.|+|++ +.|++|+.|+.|+.||++
T Consensus       281 ~lKlwDtETG~~~~~f~~~------------------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR  330 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHLD------------------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR  330 (503)
T ss_pred             eeeeeccccceEEEEEecC------------------------------CCceeeecCCCCCcEEEEecCCCcEEEEecc
Confidence            9999999999999888643                              467899999998 889999999999999999


Q ss_pred             CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCcee------------------------------
Q 036585          204 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV------------------------------  253 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~------------------------------  253 (304)
                      +++.+..+.   .|-+.|..+.|-++|+++++.+.|++++||+.+..-++                              
T Consensus       331 s~kvvqeYd---~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN  407 (503)
T KOG0282|consen  331 SGKVVQEYD---RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN  407 (503)
T ss_pred             chHHHHHHH---hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc
Confidence            999998887   58899999999999999999999999999997654211                              


Q ss_pred             ----------------eeeeccC--CCCceEEeCCCCcEEEEecCc--eEEeccCCccc-cccccCCCCC
Q 036585          254 ----------------ASWMSFD--TEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL-GAYVGRNRGC  302 (304)
Q Consensus       254 ----------------~~~~~~~--~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~-~~~~~~~~g~  302 (304)
                                      +.+.+|.  +.-..+.|||||++|++|+.|  +.+|+|+..++ ..+..|+.-|
T Consensus       408 ~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~c  477 (503)
T KOG0282|consen  408 YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPC  477 (503)
T ss_pred             eEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcce
Confidence                            1123442  334568899999999999999  88999977554 6677776555

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-33  Score=209.05  Aligned_cols=245  Identities=17%  Similarity=0.291  Sum_probs=206.0

Q ss_pred             ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEE
Q 036585           48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL  127 (304)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  127 (304)
                      .+.+.+.+|..+|..+-|+|+-..+++++.   |++|++||..+++....+++|++.+..+.|+..|+++++++.|-.++
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~---d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~  175 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASE---DATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK  175 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecC---CceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence            455667789999999999999999999998   99999999999999999999999999999999999999999999999


Q ss_pred             EEeCCc-ceeeceEEEec--cceeEecCCC--eEEEecCCCeEEEEe---------cCCCCCceEEEEecCCcEEEEeeC
Q 036585          128 LWDQRA-EKCQGLLRVQG--RPAAAYDDQG--LVFGYEKGPLDIFSV---------GGDISDANVVKFSNDGRLMLLTTM  193 (304)
Q Consensus       128 iwd~~~-~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~  193 (304)
                      +||..+ .++.+.+..+.  ...+.+-|.+  .+-...+..++.|++         .+|..-|..++.+.||.++++++.
T Consensus       176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~  255 (406)
T KOG0295|consen  176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN  255 (406)
T ss_pred             heeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence            999886 33333332222  2233343333  333555666776654         467888999999999999999999


Q ss_pred             CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC---------------CcEEEEecCCCcEEEEecCCCceeeeeec
Q 036585          194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE---------------GMFVISGSGDGSVHAWSVRSGKEVASWMS  258 (304)
Q Consensus       194 dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  258 (304)
                      |.++++|-+.++++...+.   .|+.++.+++|.|.               ++++.+++.|++|++||+.++.++.++.+
T Consensus       256 dqtl~vW~~~t~~~k~~lR---~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g  332 (406)
T KOG0295|consen  256 DQTLRVWVVATKQCKAELR---EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG  332 (406)
T ss_pred             CceEEEEEeccchhhhhhh---ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec
Confidence            9999999999998888887   68899999999773               25899999999999999999999999999


Q ss_pred             cCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc-ccccccC
Q 036585          259 FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK-LGAYVGR  298 (304)
Q Consensus       259 ~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~-~~~~~~~  298 (304)
                      |...|..++|+|.|+||+++.+|  +++|++...+ .+.+..|
T Consensus       333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah  375 (406)
T KOG0295|consen  333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH  375 (406)
T ss_pred             ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence            99999999999999999999999  9999996544 4444443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-33  Score=224.55  Aligned_cols=240  Identities=19%  Similarity=0.326  Sum_probs=210.1

Q ss_pred             ccCcEEEEeeCCCeEEEEecCCcc------eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc--eeee
Q 036585           25 EVGIYLVTASDDESIRLYDVTAAT------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KYSR   96 (304)
Q Consensus        25 ~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~--~~~~   96 (304)
                      +.++||+|||.||.|++|+.....      .+..++.|...|+.++...+++.|++++.   |-+|++|+...+  -++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~Ss---DtTVK~W~~~~~~~~c~s  111 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASS---DTTVKVWNAHKDNTFCMS  111 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecC---CceEEEeecccCcchhHh
Confidence            457899999999999999986432      36778889999999999999999999999   999999999877  5788


Q ss_pred             ecccccccEEEEEE-cCCCCEEEEcccCCeEEEEeCCccee--eceEEEeccceeEecCCCeEEEecCCCeEEEEec-CC
Q 036585           97 YFKGHHDRVVLLSL-CSSKDCFISGSLDRTVLLWDQRAEKC--QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG-GD  172 (304)
Q Consensus        97 ~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  172 (304)
                      ++..|.+.|.|+++ .++..++++|+.|+.|.+||+.++..  +..+..-                     ..-++. ++
T Consensus       112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~---------------------t~~sl~sG~  170 (735)
T KOG0308|consen  112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV---------------------TVNSLGSGP  170 (735)
T ss_pred             hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc---------------------ccccCCCCC
Confidence            89999999999999 77888999999999999999998744  2222111                     011111 57


Q ss_pred             CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585          173 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  252 (304)
                      ...|.+++.++.|..++.|+.++.+++||.++.+.+..+.   +|...|..+..++||+.+++++.||+|++||+...++
T Consensus       171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC  247 (735)
T KOG0308|consen  171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC  247 (735)
T ss_pred             ccceeeeecCCcceEEEecCcccceEEeccccccceeeee---ccccceEEEEEcCCCCeEeecCCCceEEeeeccccce
Confidence            7889999999999999999999999999999999999998   8999999999999999999999999999999999999


Q ss_pred             eeeeeccCCCCceEEeCCCCcEEEEecCceEEeccCCcc
Q 036585          253 VASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSK  291 (304)
Q Consensus       253 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~  291 (304)
                      +.++..|...|+++..+|+-.++++|+.|..|+..++..
T Consensus       248 l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  248 LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            999999999999999999999999999997777666554

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.4e-32  Score=194.07  Aligned_cols=209  Identities=14%  Similarity=0.213  Sum_probs=178.3

Q ss_pred             ceeeeecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEccCc---eeeeec-ccccccEEEEEEcCCCCEEEEccc
Q 036585           48 TCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDN---KYSRYF-KGHHDRVVLLSLCSSKDCFISGSL  122 (304)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~  122 (304)
                      ..++.+++|++.+..++|+|- |..|++++.   |+.|++|+...+   .+...+ .+|+..|.+++|+|.|++|++++.
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~---Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF   81 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGT---DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF   81 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecC---CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence            356778899999999999998 888999998   999999999853   233333 369999999999999999999999


Q ss_pred             CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEc
Q 036585          123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS  202 (304)
Q Consensus       123 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  202 (304)
                      |.++.||.-..+....                           +-.+++|...|.+++|+++|++||+++.|..|.+|..
T Consensus        82 D~t~~Iw~k~~~efec---------------------------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~  134 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFEC---------------------------VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI  134 (312)
T ss_pred             cceEEEeecCCCceeE---------------------------EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence            9999999765433221                           1234589999999999999999999999999999999


Q ss_pred             CCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC---CCceeeeeeccCCCCceEEeCCCCcEEEEec
Q 036585          203 FRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR---SGKEVASWMSFDTEPPVIKWAPGSLMFVTGS  279 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  279 (304)
                      ..+...........|...|..+.|+|...+|++++.|++|++|+-.   +-.+++++.+|...|.+++|+|.|..|++++
T Consensus       135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s  214 (312)
T KOG0645|consen  135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS  214 (312)
T ss_pred             cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence            8665544444444799999999999999999999999999999876   3467899999999999999999999999999


Q ss_pred             Cc--eEEec
Q 036585          280 SE--LSFWI  286 (304)
Q Consensus       280 ~d--~~iw~  286 (304)
                      .|  ++||.
T Consensus       215 dD~tv~Iw~  223 (312)
T KOG0645|consen  215 DDGTVSIWR  223 (312)
T ss_pred             CCcceEeee
Confidence            99  99997

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-32  Score=201.36  Aligned_cols=240  Identities=18%  Similarity=0.288  Sum_probs=208.3

Q ss_pred             eeeecceeeEeecc-cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCC--eEEEEecCCCCCceEEEE
Q 036585           12 VSLELSEEILQSME-VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDESLRLLS   88 (304)
Q Consensus        12 ~~~~~~~~~i~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~~d~~i~vwd   88 (304)
                      ...+.|...+...+ +|.++|+||.|-+|+|||+.+...+..+..|.+.|+++.|.+.-.  .|++|+.   ||.|.+|+
T Consensus        37 F~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd---DG~i~iw~  113 (362)
T KOG0294|consen   37 FAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD---DGHIIIWR  113 (362)
T ss_pred             ccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC---CCcEEEEE
Confidence            34456777777665 589999999999999999999999999999999999999999876  8999998   99999999


Q ss_pred             ccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585           89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS  168 (304)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
                      ...-+.+.++++|.+.|+.++.+|.+++.++.+.|+.++.||+-+++.....+...                        
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~------------------------  169 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN------------------------  169 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC------------------------
Confidence            99999999999999999999999999999999999999999999888766655332                        


Q ss_pred             ecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          169 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       169 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                            ..+.+.|+|.|.+|+++..+ .|-+|.+.+......+.    ....+.++.|- ++.+|++|..|+.|.+||..
T Consensus       170 ------~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~----~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d  237 (362)
T KOG0294|consen  170 ------KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE----NPKRILCATFL-DGSELLVGGDNEWISLKDTD  237 (362)
T ss_pred             ------cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh----ccccceeeeec-CCceEEEecCCceEEEeccC
Confidence                  23449999999999988876 68899998877776665    33456666664 66789999999999999999


Q ss_pred             CCceeeeeeccCCCCceEEe--CCCCcEEEEecCc--eEEeccCCc
Q 036585          249 SGKEVASWMSFDTEPPVIKW--APGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       249 ~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      +..+...+.+|..+|-++.+  .|++.+|+|+|.|  |++|+.+.+
T Consensus       238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             CCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            99999999999999999984  5678999999999  999999877

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.1e-31  Score=220.27  Aligned_cols=225  Identities=15%  Similarity=0.149  Sum_probs=179.5

Q ss_pred             eeeccee---eEeecc-cCcEEEEeeCCCeEEEEecCCc-------ceeeeecccccceeEEEEccCC-CeEEEEecCCC
Q 036585           13 SLELSEE---ILQSME-VGIYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGW   80 (304)
Q Consensus        13 ~~~~~~~---~i~~~~-~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~   80 (304)
                      .+.+|.+   .+.|+| ++++|++++.|++|++||+.++       +++..+.+|...|.+++|+|++ ..|++++.   
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~---  146 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA---  146 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC---
Confidence            3556654   366788 7889999999999999999764       3567889999999999999986 68888888   


Q ss_pred             CCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585           81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE  160 (304)
Q Consensus        81 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (304)
                      |+.|+|||+++++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+++++....+.                   
T Consensus       147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-------------------  207 (493)
T PTZ00421        147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-------------------  207 (493)
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-------------------
Confidence            9999999999999999999999999999999999999999999999999999887655443                   


Q ss_pred             CCCeEEEEecCCCC-CceEEEEecCCcEEEEee----CCCeEEEEEcCCCcee-EEEEeCCCCCCcceEEEEcCCCcEEE
Q 036585          161 KGPLDIFSVGGDIS-DANVVKFSNDGRLMLLTT----MEGHIHVLDSFRGTLL-STYNVKPVSRNSTLEASFSPEGMFVI  234 (304)
Q Consensus       161 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~  234 (304)
                                +|.. ....+.|.+++..+++++    .|+.|++||+++.... .....  .....+....|++++++|+
T Consensus       208 ----------~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~--d~~~~~~~~~~d~d~~~L~  275 (493)
T PTZ00421        208 ----------AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL--DQSSALFIPFFDEDTNLLY  275 (493)
T ss_pred             ----------cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc--CCCCceEEEEEcCCCCEEE
Confidence                      2332 234577888877777654    4789999999875533 22221  1334555678999999999


Q ss_pred             Eec-CCCcEEEEecCCCceeeeeec-cCCCCceEEeCCC
Q 036585          235 SGS-GDGSVHAWSVRSGKEVASWMS-FDTEPPVIKWAPG  271 (304)
Q Consensus       235 ~~~-~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~  271 (304)
                      +++ .|+.|++||+.+++++..... +..++..++|.|.
T Consensus       276 lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        276 IGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            887 599999999999887665533 4567889999884

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.5e-32  Score=219.34  Aligned_cols=281  Identities=19%  Similarity=0.269  Sum_probs=224.6

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      .+..+++..+||.|-.||.|++|+..+.....++.+|...|+++.|...|..|++|+.   |+.|.+||+-...-...+.
T Consensus        70 ~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGsk---Dt~IIvwDlV~E~Gl~rL~  146 (888)
T KOG0306|consen   70 CLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSK---DTDIIVWDLVGEEGLFRLR  146 (888)
T ss_pred             EeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCC---CccEEEEEeccceeeEEee
Confidence            3455567788999999999999999999999999999999999999999999999999   9999999999888888999


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc---------------------------------
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---------------------------------  146 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------------------------  146 (304)
                      +|.+.|+.+-|..+.+++++.+.|+.|++||+++..+..+.-.+...                                 
T Consensus       147 GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~  226 (888)
T KOG0306|consen  147 GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKE  226 (888)
T ss_pred             cchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeeccccccc
Confidence            99999999999988889999999999999999887654431100000                                 


Q ss_pred             ----------------------eeEecCCCeEE-----------------------------------------------
Q 036585          147 ----------------------AAAYDDQGLVF-----------------------------------------------  157 (304)
Q Consensus       147 ----------------------~~~~~~~~~~~-----------------------------------------------  157 (304)
                                            ....+.+..++                                               
T Consensus       227 ~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~s  306 (888)
T KOG0306|consen  227 TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKS  306 (888)
T ss_pred             ccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhh
Confidence                                  00001111100                                               


Q ss_pred             --------------------------------------------------------------------------------
Q 036585          158 --------------------------------------------------------------------------------  157 (304)
Q Consensus       158 --------------------------------------------------------------------------------  157 (304)
                                                                                                      
T Consensus       307 l~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~  386 (888)
T KOG0306|consen  307 LSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI  386 (888)
T ss_pred             HHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCce
Confidence                                                                                            


Q ss_pred             -------------------------------------------EecCCCeEEEEec---------CCCCCceEEEEecCC
Q 036585          158 -------------------------------------------GYEKGPLDIFSVG---------GDISDANVVKFSNDG  185 (304)
Q Consensus       158 -------------------------------------------~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~  185 (304)
                                                                 +..+|.+.+|++.         .|.+.+..++.+||+
T Consensus       387 ~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~  466 (888)
T KOG0306|consen  387 LLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN  466 (888)
T ss_pred             eeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC
Confidence                                                       3344444444432         378889999999999


Q ss_pred             cEEEEeeCCCeEEEEEcCC-----CceeEEEEeC----CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585          186 RLMLLTTMEGHIHVLDSFR-----GTLLSTYNVK----PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       186 ~~l~~~~~dg~i~~~d~~~-----~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      +.+++|+.|.+|++||..-     +...+.+...    -.-...|.++.+||||++|+++=-|++|+||-+.+.+..-.+
T Consensus       467 ~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL  546 (888)
T KOG0306|consen  467 KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL  546 (888)
T ss_pred             CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee
Confidence            9999999999999999641     1111111110    014578999999999999999999999999999999999999


Q ss_pred             eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc-cccccCCCCCC
Q 036585          257 MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL-GAYVGRNRGCM  303 (304)
Q Consensus       257 ~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~-~~~~~~~~g~~  303 (304)
                      .||.-||.|+..+||++.++|||.|  ++||-++...- +.+.+|.+.+|
T Consensus       547 YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm  596 (888)
T KOG0306|consen  547 YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVM  596 (888)
T ss_pred             cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCcee
Confidence            9999999999999999999999999  99999987665 45666776654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.2e-32  Score=204.12  Aligned_cols=243  Identities=22%  Similarity=0.296  Sum_probs=199.4

Q ss_pred             cceeeeecceeeEee----ccc--CcEEEEeeCCCeEEEEecCCcce----eeeecccccceeEEEEccCCCeEEEEecC
Q 036585            9 EDKVSLELSEEILQS----MEV--GIYLVTASDDESIRLYDVTAATC----LKTINSKKYGVDLVCFTSHPTTVIYSSKN   78 (304)
Q Consensus         9 ~~~~~~~~~~~~i~~----~~~--~~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   78 (304)
                      +....+.+|.+.+..    .++  ...+++++.|.++++|..+.++.    +..-++|...|.+++..+++..+++++. 
T Consensus       135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~-  213 (423)
T KOG0313|consen  135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW-  213 (423)
T ss_pred             ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecc-
Confidence            345566777766552    222  34799999999999999886643    2334599999999999999999999998 


Q ss_pred             CCCCceEEEEccC-------------------------ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCc
Q 036585           79 GWDESLRLLSLHD-------------------------NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA  133 (304)
Q Consensus        79 ~~d~~i~vwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  133 (304)
                        |..|++|+.++                         +.++.++.+|+++|.++.|++ ...+++++.|.+|+.||+++
T Consensus       214 --D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet  290 (423)
T KOG0313|consen  214 --DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET  290 (423)
T ss_pred             --cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence              99999999321                         124556789999999999998 66899999999999999999


Q ss_pred             ceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEe
Q 036585          134 EKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  213 (304)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  213 (304)
                      +.....+..                              ...++++.++|..++|++|+.|..|++||.+++.-......
T Consensus       291 g~~~~~~~~------------------------------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s  340 (423)
T KOG0313|consen  291 GGLKSTLTT------------------------------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQS  340 (423)
T ss_pred             ccceeeeec------------------------------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEe
Confidence            988776652                              35678999999999999999999999999988754333333


Q ss_pred             CCCCCCcceEEEEcCCC-cEEEEecCCCcEEEEecCCCc-eeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585          214 KPVSRNSTLEASFSPEG-MFVISGSGDGSVHAWSVRSGK-EVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       214 ~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      ..+|.+.|.++.|+|.. ..|++|+.|+++++||+++.+ ++..+.+|...|.++.|+ ++..+++|+.|  ++|+.
T Consensus       341 ~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  341 LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK  416 (423)
T ss_pred             eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence            33799999999999954 568899999999999999987 899999999999999997 56689999999  66654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.6e-31  Score=209.53  Aligned_cols=244  Identities=22%  Similarity=0.420  Sum_probs=205.4

Q ss_pred             eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEE
Q 036585           50 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLW  129 (304)
Q Consensus        50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  129 (304)
                      +.++.+|..+|.+++|+|+++.+++++.   |+.+++|++.+++....+..|...+..+.|+|+++++++++.+|.+++|
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~---~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~   78 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSG---DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW   78 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeec---CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence            3467789999999999999999999998   9999999999988888888899999999999999999999999999999


Q ss_pred             eCCcceeeceEEEec--cceeEecCCC-eEEEec-CCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCe
Q 036585          130 DQRAEKCQGLLRVQG--RPAAAYDDQG-LVFGYE-KGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGH  196 (304)
Q Consensus       130 d~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~-~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~  196 (304)
                      |+++++....+..+.  ...+.+.+++ .++... ++.+.+|++.         .|...+.+++|+|++.++++++.+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  158 (289)
T cd00200          79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT  158 (289)
T ss_pred             EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence            999876666655433  3345666654 333333 7778888765         36778999999999998888888999


Q ss_pred             EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEE
Q 036585          197 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFV  276 (304)
Q Consensus       197 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  276 (304)
                      |++||+++++....+.   .+...+.+++|+|+++.+++++.|+.|++||+++++.+..+..|...+.+++|+|++.+++
T Consensus       159 i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  235 (289)
T cd00200         159 IKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLA  235 (289)
T ss_pred             EEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEE
Confidence            9999999888888887   5777999999999999999999999999999999998888888999999999999999999


Q ss_pred             EecCc--eEEeccCC-ccccccccCC
Q 036585          277 TGSSE--LSFWIPDL-SKLGAYVGRN  299 (304)
Q Consensus       277 s~~~d--~~iw~~~~-~~~~~~~~~~  299 (304)
                      +++.+  +++|+... ..+..+..|.
T Consensus       236 ~~~~~~~i~i~~~~~~~~~~~~~~~~  261 (289)
T cd00200         236 SGSEDGTIRVWDLRTGECVQTLSGHT  261 (289)
T ss_pred             EEcCCCcEEEEEcCCceeEEEccccC
Confidence            88855  99999874 3344444444

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-31  Score=194.89  Aligned_cols=259  Identities=18%  Similarity=0.264  Sum_probs=210.6

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ....+.+++.+..|+.+++||++++|++....+...++ |..++.+.+|.+ ...+++|+.   ||.|+++|+++++...
T Consensus        15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~---dg~vr~~Dln~~~~~~   89 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGL---DGQVRRYDLNTGNEDQ   89 (323)
T ss_pred             ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEecc---CceEEEEEecCCccee
Confidence            34457888888999999999999999999876555554 778999999986 567888887   9999999999987554


Q ss_pred             ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc-ceeEecCCCeEEEecCCCeEEEEecCC---
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFGYEKGPLDIFSVGGD---  172 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---  172 (304)
                       +..|..+|.|+.+++....+++|+.|++|++||.+.......+..... ..+....+.++++..+..+.+|++...   
T Consensus        90 -igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~  168 (323)
T KOG1036|consen   90 -IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEP  168 (323)
T ss_pred             -eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccch
Confidence             455999999999999888999999999999999998655555544332 245556677888899999999998753   


Q ss_pred             --------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC----ceeEEEEeCCC------CCCcceEEEEcCCCcEEE
Q 036585          173 --------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----TLLSTYNVKPV------SRNSTLEASFSPEGMFVI  234 (304)
Q Consensus       173 --------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~  234 (304)
                              ...++++++-|++.-+++++-||.|.+=.+...    +....|+.+..      .-.+|++++|+|-...||
T Consensus       169 ~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfa  248 (323)
T KOG1036|consen  169 FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFA  248 (323)
T ss_pred             hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEE
Confidence                    245789999999888999999999888665544    33344443221      123799999999989999


Q ss_pred             EecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585          235 SGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       235 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      ||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||.++.-
T Consensus       249 TgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy  295 (323)
T KOG1036|consen  249 TGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY  295 (323)
T ss_pred             ecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence            99999999999999999999998788889999999999999998753

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-31  Score=188.63  Aligned_cols=213  Identities=17%  Similarity=0.326  Sum_probs=187.8

Q ss_pred             eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEE
Q 036585           49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLL  128 (304)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  128 (304)
                      ....+..+.++|..+.|+-+|++.++++.   |.+|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..+.+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGs---drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v   85 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGS---DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV   85 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCC---CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence            34567889999999999999999999998   999999999999999999999999999999999999999999999999


Q ss_pred             EeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC--c
Q 036585          129 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG--T  206 (304)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~  206 (304)
                      ||+.+++..+.+.                             +|...|+.++|+.+...+++|+.|.++++||.++.  +
T Consensus        86 wDV~TGkv~Rr~r-----------------------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e  136 (307)
T KOG0316|consen   86 WDVNTGKVDRRFR-----------------------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE  136 (307)
T ss_pred             EEcccCeeeeecc-----------------------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence            9999999988776                             78889999999999999999999999999999764  4


Q ss_pred             eeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEE
Q 036585          207 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSF  284 (304)
Q Consensus       207 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~i  284 (304)
                      +++.+.   .....|.++..  .+..+++|+.||+++.||++.|+....+.+  .||++++|++|++....++-|  +++
T Consensus       137 PiQild---ea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrL  209 (307)
T KOG0316|consen  137 PIQILD---EAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRL  209 (307)
T ss_pred             ccchhh---hhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeee
Confidence            555555   45677887776  456899999999999999999988766654  489999999999999999988  888


Q ss_pred             eccCCcc-ccccccCCC
Q 036585          285 WIPDLSK-LGAYVGRNR  300 (304)
Q Consensus       285 w~~~~~~-~~~~~~~~~  300 (304)
                      .+-+..+ ++.|+||+.
T Consensus       210 lDk~tGklL~sYkGhkn  226 (307)
T KOG0316|consen  210 LDKETGKLLKSYKGHKN  226 (307)
T ss_pred             cccchhHHHHHhccccc
Confidence            8876654 578888764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=2.2e-31  Score=218.85  Aligned_cols=235  Identities=19%  Similarity=0.329  Sum_probs=202.7

Q ss_pred             eecceeeEeecc---cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585           14 LELSEEILQSME---VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   90 (304)
Q Consensus        14 ~~~~~~~i~~~~---~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~   90 (304)
                      +.+|.+.+....   -+++|++|+.|.++++||..++++...+.+|...+.++..  ....+++|+.   |.+|++|+++
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~---D~tVkVW~v~  319 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSR---DNTVKVWDVT  319 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccC---CceEEEEecc
Confidence            677777655433   3789999999999999999999999999999999998887  5667777777   9999999999


Q ss_pred             CceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           91 DNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      +++.+..+.+|.++|.++..+  +.++++|+.|++|++||+.+++++..+.                             
T Consensus       320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-----------------------------  368 (537)
T KOG0274|consen  320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-----------------------------  368 (537)
T ss_pred             CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-----------------------------
Confidence            999999999999999999997  7799999999999999999888877765                             


Q ss_pred             CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585          171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~  249 (304)
                      +|...|.++.+.+. ..+++|+.|++|++||+++. +++.++.   .|..-+..+.+  .+++|++++.|+.|++||..+
T Consensus       369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~---~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ---GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE  442 (537)
T ss_pred             CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc---CCccccccccc--ccceeEeccccccEEEeeccc
Confidence            78899999988665 88999999999999999999 8888888   57676655544  678999999999999999999


Q ss_pred             Cceeeeeec-cCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585          250 GKEVASWMS-FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       250 ~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~  292 (304)
                      +++++.+.+ |...|..+++.  ...+++++.|  +++|++...++
T Consensus       443 ~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  443 GECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             CceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence            999999988 67888888876  3455566666  99998876554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=4.2e-31  Score=217.25  Aligned_cols=229  Identities=22%  Similarity=0.365  Sum_probs=205.9

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeee-ecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV  105 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v  105 (304)
                      .+++++++.|++|++||..++..+.. +.+|.+.|.++++..-+..+++|+.   |.++++||..++++..++.+|...|
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~---D~t~rvWd~~sg~C~~~l~gh~stv  294 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGST---DKTERVWDCSTGECTHSLQGHTSSV  294 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEec---CCcEEeEecCCCcEEEEecCCCceE
Confidence            67899999999999999999998888 9999999999999887899999998   9999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC
Q 036585          106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG  185 (304)
Q Consensus       106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  185 (304)
                      .++...  ...+++|+.|.+|++|++.++..+..+.                             +|..+|+++.++  +
T Consensus       295 ~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~-----------------------------~h~~~V~~v~~~--~  341 (537)
T KOG0274|consen  295 RCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLR-----------------------------GHTGPVNCVQLD--E  341 (537)
T ss_pred             EEEEcc--CceEeeccCCceEEEEeccCcceEEEec-----------------------------cccccEEEEEec--C
Confidence            998875  4578889999999999999888877664                             577899999997  8


Q ss_pred             cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-ceeeeeeccCCCCc
Q 036585          186 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-KEVASWMSFDTEPP  264 (304)
Q Consensus       186 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~  264 (304)
                      .++++|+.||+|++||..+++++.++.   +|...|+++.+.+. .++++|+.|+.|++||+.+. +++..+.+|..-+.
T Consensus       342 ~~lvsgs~d~~v~VW~~~~~~cl~sl~---gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~  417 (537)
T KOG0274|consen  342 PLLVSGSYDGTVKVWDPRTGKCLKSLS---GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS  417 (537)
T ss_pred             CEEEEEecCceEEEEEhhhceeeeeec---CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccc
Confidence            899999999999999999999999999   79999999988765 89999999999999999999 99999999999887


Q ss_pred             eEEeCCCCcEEEEecCc--eEEeccCCc-ccccccc
Q 036585          265 VIKWAPGSLMFVTGSSE--LSFWIPDLS-KLGAYVG  297 (304)
Q Consensus       265 ~~~~~~~~~~l~s~~~d--~~iw~~~~~-~~~~~~~  297 (304)
                      .+.+  .+++|++++.|  +++|+.+.. .++.+.+
T Consensus       418 ~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  418 SLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             cccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence            6665  67799999999  999988654 4455555

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=7.8e-31  Score=199.15  Aligned_cols=243  Identities=14%  Similarity=0.181  Sum_probs=208.6

Q ss_pred             ceeeeecceeeE---eecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           10 DKVSLELSEEIL---QSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        10 ~~~~~~~~~~~i---~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      -...+++|...+   .++++...+++++.|..|+||.............|..+|+.+..+|.|.+|++++.   |++..+
T Consensus       253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~---d~~w~F  329 (506)
T KOG0289|consen  253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASN---DGTWAF  329 (506)
T ss_pred             hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecC---CceEEE
Confidence            344567776654   45677889999999999999999888888888999999999999999999999999   999999


Q ss_pred             EEccCceeeeecccc--cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585           87 LSLHDNKYSRYFKGH--HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL  164 (304)
Q Consensus        87 wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (304)
                      .|++++..+......  .-.+++.+|+|||..|.+|..|+.++|||+.++.....|.                       
T Consensus       330 sd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-----------------------  386 (506)
T KOG0289|consen  330 SDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-----------------------  386 (506)
T ss_pred             EEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-----------------------
Confidence            999999877665532  2358999999999999999999999999999887665554                       


Q ss_pred             EEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEE
Q 036585          165 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHA  244 (304)
Q Consensus       165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v  244 (304)
                            +|.++|..++|+.+|-+|++++.|+.|++||+|..+...++...  ....+.++.|.+.|.+|+.++.|=.|++
T Consensus       387 ------ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~g~~l~Vy~  458 (506)
T KOG0289|consen  387 ------GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQSGTYLGIAGSDLQVYI  458 (506)
T ss_pred             ------CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc--ccccceeEEEcCCCCeEEeecceeEEEE
Confidence                  78899999999999999999999999999999999988888853  3347999999999999999987766666


Q ss_pred             EecC--CCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585          245 WSVR--SGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       245 ~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      ++-.  +..++..+..|.+..+++.|....+++++++.|  .+++.
T Consensus       459 ~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  459 CKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA  504 (506)
T ss_pred             EecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence            6632  456778888899999999999999999999999  66654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=8.9e-32  Score=196.37  Aligned_cols=217  Identities=20%  Similarity=0.307  Sum_probs=186.4

Q ss_pred             eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC------------c------eeeeecccccccEEEEEEcC
Q 036585           51 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD------------N------KYSRYFKGHHDRVVLLSLCS  112 (304)
Q Consensus        51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~------------~------~~~~~~~~~~~~v~~~~~~~  112 (304)
                      ..+..|+.++.+.+|+|||.++++|+.   |..|+|.|++.            +      -.++++-.|.++|.++.|+|
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsa---D~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSA---DASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCC---cceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            345679999999999999999999999   99999999871            1      13566778999999999999


Q ss_pred             CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee
Q 036585          113 SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT  192 (304)
Q Consensus       113 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  192 (304)
                      ....|++++.|++|+++|+......+.++.-                           ....+|.++.|+|.|.++++|.
T Consensus       183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~---------------------------qd~~~vrsiSfHPsGefllvgT  235 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTSAKRAFKVF---------------------------QDTEPVRSISFHPSGEFLLVGT  235 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHHHHHHHHHh---------------------------hccceeeeEeecCCCceEEEec
Confidence            9999999999999999999876554433321                           1335789999999999999999


Q ss_pred             CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee-eccC-CCCceEEeCC
Q 036585          193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW-MSFD-TEPPVIKWAP  270 (304)
Q Consensus       193 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~-~~i~~~~~~~  270 (304)
                      .-..+++||+.+.++...-.....|.+.|+++.+++.+++.++++.||.|++||--+++++.++ ..|. ..|.+..|..
T Consensus       236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk  315 (430)
T KOG0640|consen  236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK  315 (430)
T ss_pred             CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc
Confidence            9999999999999988877766779999999999999999999999999999999999998888 4564 4689999999


Q ss_pred             CCcEEEEecCc--eEEeccCCc-ccccccc
Q 036585          271 GSLMFVTGSSE--LSFWIPDLS-KLGAYVG  297 (304)
Q Consensus       271 ~~~~l~s~~~d--~~iw~~~~~-~~~~~~~  297 (304)
                      +++++.+.+.|  +++|.+... .+.+|.|
T Consensus       316 n~kyiLsSG~DS~vkLWEi~t~R~l~~YtG  345 (430)
T KOG0640|consen  316 NGKYILSSGKDSTVKLWEISTGRMLKEYTG  345 (430)
T ss_pred             CCeEEeecCCcceeeeeeecCCceEEEEec
Confidence            99999999999  999998654 4566654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-31  Score=217.26  Aligned_cols=214  Identities=17%  Similarity=0.298  Sum_probs=176.3

Q ss_pred             eeeec-ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC--------------------------------c----
Q 036585           50 LKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--------------------------------N----   92 (304)
Q Consensus        50 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~--------------------------------~----   92 (304)
                      .+.+. .|.+.|.++.|++||++||+|+.   |+.|+||.+..                                .    
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGe---D~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~  335 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGE---DGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR  335 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCC---CceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence            45566 89999999999999999999999   99999998765                                0    


Q ss_pred             ------------------------eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecccee
Q 036585           93 ------------------------KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA  148 (304)
Q Consensus        93 ------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  148 (304)
                                              ++++.+.+|.+.|..+.|+.++ +|++++.|.+|++|++....++..|.       
T Consensus       336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-------  407 (712)
T KOG0283|consen  336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-------  407 (712)
T ss_pred             ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-------
Confidence                                    1234467899999999999765 89999999999999999999998886       


Q ss_pred             EecCCCeEEEecCCCeEEEEecCCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc
Q 036585          149 AYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  227 (304)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s  227 (304)
                                             |...|+|++|+| |.++|++|+-||+|+||++...+...-..    ...-|++++|+
T Consensus       408 -----------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D----l~~lITAvcy~  460 (712)
T KOG0283|consen  408 -----------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND----LRDLITAVCYS  460 (712)
T ss_pred             -----------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh----hhhhheeEEec
Confidence                                   778999999999 78999999999999999998877665554    55899999999


Q ss_pred             CCCcEEEEecCCCcEEEEecCCCceeeeee--cc------CCCCceEEeCCCCc-EEEEecCc--eEEeccC-Ccccccc
Q 036585          228 PEGMFVISGSGDGSVHAWSVRSGKEVASWM--SF------DTEPPVIKWAPGSL-MFVTGSSE--LSFWIPD-LSKLGAY  295 (304)
Q Consensus       228 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~------~~~i~~~~~~~~~~-~l~s~~~d--~~iw~~~-~~~~~~~  295 (304)
                      |||++.+.|+.+|.+++|++...+......  .|      ...|+++.|.|... .+++.+.|  |||++.. .+.+..|
T Consensus       461 PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf  540 (712)
T KOG0283|consen  461 PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF  540 (712)
T ss_pred             cCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh
Confidence            999999999999999999998877654441  11      23799999998543 34444555  9999984 4445677


Q ss_pred             ccCCCC
Q 036585          296 VGRNRG  301 (304)
Q Consensus       296 ~~~~~g  301 (304)
                      +|.+.+
T Consensus       541 KG~~n~  546 (712)
T KOG0283|consen  541 KGFRNT  546 (712)
T ss_pred             cccccC
Confidence            766554

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.2e-29  Score=209.47  Aligned_cols=227  Identities=13%  Similarity=0.166  Sum_probs=172.9

Q ss_pred             eeeeecceee---Eeeccc-CcEEEEeeCCCeEEEEecCCcc--------eeeeecccccceeEEEEccCCCeE-EEEec
Q 036585           11 KVSLELSEEI---LQSMEV-GIYLVTASDDESIRLYDVTAAT--------CLKTINSKKYGVDLVCFTSHPTTV-IYSSK   77 (304)
Q Consensus        11 ~~~~~~~~~~---i~~~~~-~~~l~~~~~d~~i~vw~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~   77 (304)
                      ...+.+|...   +.|+|+ +++|++|+.|++|+|||+.++.        ++..+.+|...|.+++|+|++..+ ++++.
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~  146 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF  146 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence            4456666653   667886 7899999999999999997542        344678899999999999998865 57777


Q ss_pred             CCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEE
Q 036585           78 NGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF  157 (304)
Q Consensus        78 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (304)
                         |+.|++||+.+++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++++....+.                
T Consensus       147 ---DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~----------------  206 (568)
T PTZ00420        147 ---DSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH----------------  206 (568)
T ss_pred             ---CCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe----------------
Confidence               9999999999998777775 66789999999999999999999999999999987765554                


Q ss_pred             EecCCCeEEEEecCCCCCc-----eEEEEecCCcEEEEeeCCC----eEEEEEcCC-CceeEEEEeCCCCCCcceEEEEc
Q 036585          158 GYEKGPLDIFSVGGDISDA-----NVVKFSNDGRLMLLTTMEG----HIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFS  227 (304)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg----~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~~s  227 (304)
                                   +|.+.+     ....|++++.++++++.++    +|++||+++ ++++..+... ...+.+......
T Consensus       207 -------------gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld-~~~~~L~p~~D~  272 (568)
T PTZ00420        207 -------------IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID-NASAPLIPHYDE  272 (568)
T ss_pred             -------------cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec-CCccceEEeeeC
Confidence                         233332     2234568889999887764    799999985 5556555422 233344434445


Q ss_pred             CCCcEEEEecCCCcEEEEecCCCce--eeeeeccCCCCceEEeCCCC
Q 036585          228 PEGMFVISGSGDGSVHAWSVRSGKE--VASWMSFDTEPPVIKWAPGS  272 (304)
Q Consensus       228 ~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~  272 (304)
                      +++.++++|+.|+.|++|++..+..  +..+. +..+..+++|.|..
T Consensus       273 ~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        273 STGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             CCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence            5688899999999999999977643  22223 56788999999964

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.2e-30  Score=185.87  Aligned_cols=225  Identities=19%  Similarity=0.344  Sum_probs=193.8

Q ss_pred             eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee--cccccccEEEEEEcC-CCCEEEEcccCCeEE
Q 036585           51 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY--FKGHHDRVVLLSLCS-SKDCFISGSLDRTVL  127 (304)
Q Consensus        51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~  127 (304)
                      +.+++|...+.+++|+.+|..|++++.   |+++.+|+++..+....  ..+|.+.|-.++|+| +...|++++.|.+|+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~---dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSF---DKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeeccc---CCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence            557789999999999999999999999   99999999987754443  458999999999997 567999999999999


Q ss_pred             EEeCCcceeeceEEEecc-ceeEecCCCeEE--EecCCCeEEEEecC--------CCCCceEEEEecCCcEEEEeeCCCe
Q 036585          128 LWDQRAEKCQGLLRVQGR-PAAAYDDQGLVF--GYEKGPLDIFSVGG--------DISDANVVKFSNDGRLMLLTTMEGH  196 (304)
Q Consensus       128 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~  196 (304)
                      +||++.+++......... ..+.++|++..+  +..+..+...+...        ....++.+.|+.++.+|+.....|.
T Consensus        91 ~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             EEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence            999999999887766544 457788887554  44445555555443        3356788999988888888888899


Q ss_pred             EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEE
Q 036585          197 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFV  276 (304)
Q Consensus       197 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  276 (304)
                      |.|.....-+++..++   .|.....|+.|+|+|+|+|+|+.|-.+.+||+...-+++.+..+.-+|+.+.|+.||++||
T Consensus       171 v~ILsypsLkpv~si~---AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA  247 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIK---AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA  247 (313)
T ss_pred             EEEEeccccccccccc---cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence            9999999999999998   7889999999999999999999999999999999889999999999999999999999999


Q ss_pred             EecCc
Q 036585          277 TGSSE  281 (304)
Q Consensus       277 s~~~d  281 (304)
                      +||+|
T Consensus       248 SaSED  252 (313)
T KOG1407|consen  248 SASED  252 (313)
T ss_pred             ccCcc
Confidence            99999

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=9.7e-31  Score=201.22  Aligned_cols=233  Identities=17%  Similarity=0.248  Sum_probs=195.5

Q ss_pred             eeEeecccCc-EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           19 EILQSMEVGI-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        19 ~~i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ..+.++|... -+|+++. -.+.+|+..+.....++......+++++|-.||+.+++|..   .|.|+|||+.+...++.
T Consensus        30 ssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~---sG~V~vfD~k~r~iLR~  105 (487)
T KOG0310|consen   30 SSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE---SGHVKVFDMKSRVILRQ  105 (487)
T ss_pred             eeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC---cCcEEEeccccHHHHHH
Confidence            3466777532 3444443 46999999988888888888889999999999999999998   99999999877778889


Q ss_pred             cccccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585           98 FKGHHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA  176 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  176 (304)
                      +.+|+.++....|+|+ +..|++|+.|+.+++||+.+....                             .++.+|+..|
T Consensus       106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~-----------------------------~~l~~htDYV  156 (487)
T KOG0310|consen  106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ-----------------------------AELSGHTDYV  156 (487)
T ss_pred             HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE-----------------------------EEecCCccee
Confidence            9999999999999995 557888999999999999887642                             2234799999


Q ss_pred             eEEEEecCC-cEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-cee
Q 036585          177 NVVKFSNDG-RLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-KEV  253 (304)
Q Consensus       177 ~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~  253 (304)
                      .+.+|+|.. ..+++|+.||.|++||++.. ..+.++.    |..+|..+.+-|.|..+++++. +.|+|||+-+| +.+
T Consensus       157 R~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln----hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  157 RCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN----HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLL  231 (487)
T ss_pred             EeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec----CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceeh
Confidence            999999964 47889999999999999987 6666665    8999999999999999999974 46999999854 555


Q ss_pred             eeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          254 ASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       254 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      ..+..|...|+|+++..++..|++++-|  +++|++..
T Consensus       232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~  269 (487)
T KOG0310|consen  232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN  269 (487)
T ss_pred             hhhhcccceEEEEEeecCCceEeecccccceEEEEccc
Confidence            5566699999999999999999999999  99998543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.98  E-value=2.1e-30  Score=200.96  Aligned_cols=271  Identities=17%  Similarity=0.307  Sum_probs=208.7

Q ss_pred             eeeeecceeeEe---ecccCcEEEEeeCCCeEEEEecCCcc----eeeeec-ccccceeEEEEccCCCeEEEEecCCCCC
Q 036585           11 KVSLELSEEILQ---SMEVGIYLVTASDDESIRLYDVTAAT----CLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDE   82 (304)
Q Consensus        11 ~~~~~~~~~~i~---~~~~~~~l~~~~~d~~i~vw~~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~   82 (304)
                      .+.+++|..+|.   +-|.|-+|++|+.|.+|++||++...    ..+.+. .....|+++.|++.+..|++.+.   ..
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg---~a  236 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG---SA  236 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec---Cc
Confidence            345666776655   44679999999999999999987532    222232 23347999999999999998887   88


Q ss_pred             ceEEEEccCceeee------------ecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceee-ceEEEec----
Q 036585           83 SLRLLSLHDNKYSR------------YFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQ-GLLRVQG----  144 (304)
Q Consensus        83 ~i~vwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~----  144 (304)
                      ..+|+|-...+.+.            .-++|...++|.+|+|.. ..|++++.||++++||+...+.. .+++...    
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            99999976543322            235899999999999954 58999999999999999765533 3333321    


Q ss_pred             ---cceeEecCCCeEE--EecCCCeEEEEec------------CCCC--CceEEEEecCCcEEEEeeCCCeEEEEEcCCC
Q 036585          145 ---RPAAAYDDQGLVF--GYEKGPLDIFSVG------------GDIS--DANVVKFSNDGRLMLLTTMEGHIHVLDSFRG  205 (304)
Q Consensus       145 ---~~~~~~~~~~~~~--~~~~~~~~~~~~~------------~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  205 (304)
                         .....|++++..+  +..+|.+++|+..            .|..  .|+++.||++|++|++-+.|+++++||+++.
T Consensus       317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence               2246788887544  6778999999864            2554  8999999999999999999999999999875


Q ss_pred             c-eeEEEEeCCCCCCcceEEEEcCCCcEEEEec------CCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEe
Q 036585          206 T-LLSTYNVKPVSRNSTLEASFSPEGMFVISGS------GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTG  278 (304)
Q Consensus       206 ~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  278 (304)
                      + ++...... ....+-+.++|||+.++|++|.      ..|.+.+||..+.+.+..+.-....|..+.|+|--+.+..+
T Consensus       397 kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g  475 (641)
T KOG0772|consen  397 KKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG  475 (641)
T ss_pred             ccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence            4 44444322 2455677899999999999985      34689999999999999987778889999999988888888


Q ss_pred             cCc--eEEe
Q 036585          279 SSE--LSFW  285 (304)
Q Consensus       279 ~~d--~~iw  285 (304)
                      +.|  +++|
T Consensus       476 sgdG~~~vy  484 (641)
T KOG0772|consen  476 SGDGTAHVY  484 (641)
T ss_pred             cCCCceEEE
Confidence            877  5544

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.98  E-value=2e-30  Score=217.16  Aligned_cols=249  Identities=16%  Similarity=0.198  Sum_probs=205.2

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCC------------------cceeeeecccccceeEEEEccCCCeEEEEecC
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTA------------------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN   78 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   78 (304)
                      ...++.|++||++||+|+.|+.|.||+...                  .+.+..+.+|...|..++|+|++.+|++++. 
T Consensus        71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~-  149 (942)
T KOG0973|consen   71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL-  149 (942)
T ss_pred             ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc-
Confidence            345688999999999999999999999762                  2366788999999999999999999999998 


Q ss_pred             CCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585           79 GWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG  158 (304)
Q Consensus        79 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (304)
                        |++|.+|+..+.+.+..+.+|...|..+.|.|-|++|++-+.|++|++|++.+-...+.+..+-...           
T Consensus       150 --DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~-----------  216 (942)
T KOG0973|consen  150 --DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES-----------  216 (942)
T ss_pred             --cceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC-----------
Confidence              9999999999999999999999999999999999999999999999999977655555443221100           


Q ss_pred             ecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC----CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-----C
Q 036585          159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-----E  229 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-----~  229 (304)
                                  ........+.|||||++|++...    -..+.|.+-.+.+.-..+.   +|..++.+++|+|     .
T Consensus       217 ------------~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv---GH~~p~evvrFnP~lfe~~  281 (942)
T KOG0973|consen  217 ------------PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV---GHSAPVEVVRFNPKLFERN  281 (942)
T ss_pred             ------------CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee---cCCCceEEEEeChHHhccc
Confidence                        12235677999999999998632    3368888887777777777   7999999999998     1


Q ss_pred             Cc------------EEEEecCCCcEEEEecCCCceeeee-eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccccc
Q 036585          230 GM------------FVISGSGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLGA  294 (304)
Q Consensus       230 ~~------------~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~~  294 (304)
                      .+            .+|+|+.|++|.||.....+++... .-....|..++|+|||..|+.+|.|  +.+..++-+.+..
T Consensus       282 ~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~  361 (942)
T KOG0973|consen  282 NKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGV  361 (942)
T ss_pred             cccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence            12            6789999999999999887776554 3346789999999999999999999  6667766655543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=4.1e-30  Score=196.47  Aligned_cols=234  Identities=22%  Similarity=0.328  Sum_probs=198.2

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      -.+..++||+|||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.   |++|++|+++....+.++
T Consensus       206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~---Drsvkvw~~~~~s~vetl  282 (479)
T KOG0299|consen  206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA---DRSVKVWSIDQLSYVETL  282 (479)
T ss_pred             EEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec---CCceEEEehhHhHHHHHH
Confidence            34778899999999999999999999999999999999999999999999999999998   999999999999999999


Q ss_pred             ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585           99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV  178 (304)
Q Consensus        99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  178 (304)
                      -+|++.|.++.....++.+-+|+.|+++++|++..... ..+.                             ++.+.+.|
T Consensus       283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifr-----------------------------g~~~sidc  332 (479)
T KOG0299|consen  283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFR-----------------------------GGEGSIDC  332 (479)
T ss_pred             hCCccceeeechhcccceEEeccccceeEEEeccccce-eeee-----------------------------CCCCCeee
Confidence            99999999999988888888888999999999943322 2222                             45667888


Q ss_pred             EEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC---------CCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585          179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---------SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---------~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~  249 (304)
                      ++|-.+. .|++|+.+|.|.+|++.+.+++.+....++         +...|++++..|...++++|+.+|.|++|-+.+
T Consensus       333 v~~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~  411 (479)
T KOG0299|consen  333 VAFINDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED  411 (479)
T ss_pred             EEEeccc-ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence            9997554 599999999999999999999988774322         123789999999999999999999999999977


Q ss_pred             C----ceeeeeeccCCCCceEEeCCCCcEEEEecCc----eEEecc
Q 036585          250 G----KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE----LSFWIP  287 (304)
Q Consensus       250 ~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----~~iw~~  287 (304)
                      +    +++..+. -.+-|++++|+++|+.+++|...    .+-|..
T Consensus       412 g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  412 GLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             Cccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence            6    3455554 67889999999999966666544    565644

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=3.4e-32  Score=218.50  Aligned_cols=224  Identities=19%  Similarity=0.366  Sum_probs=208.6

Q ss_pred             ccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc
Q 036585           25 EVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR  104 (304)
Q Consensus        25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  104 (304)
                      ..++.+++|+.|..+-+|.+.....+..|.+|..+|.++.|++....|++|+.   +|+|++||++..+.++++.+|...
T Consensus        38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsa---sgtiK~wDleeAk~vrtLtgh~~~  114 (825)
T KOG0267|consen   38 KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSA---SGTIKVWDLEEAKIVRTLTGHLLN  114 (825)
T ss_pred             ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccccc---CCceeeeehhhhhhhhhhhccccC
Confidence            45789999999999999999888888889999999999999999999999998   999999999999999999999999


Q ss_pred             EEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC
Q 036585          105 VVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND  184 (304)
Q Consensus       105 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  184 (304)
                      +.++.|+|-+.++++|+.|+.+++||.+...+...+.                             +|...+..+.|+|+
T Consensus       115 ~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-----------------------------s~~~vv~~l~lsP~  165 (825)
T KOG0267|consen  115 ITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-----------------------------SHTRVVDVLRLSPD  165 (825)
T ss_pred             cceeeeccceEEeccccccccceehhhhccCceeeec-----------------------------CCcceeEEEeecCC
Confidence            9999999999999999999999999999777766654                             57778999999999


Q ss_pred             CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCc
Q 036585          185 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPP  264 (304)
Q Consensus       185 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~  264 (304)
                      |++++.++.|..+++||+..|+....|.   .|...+..+.|+|..-.+++|+.|+++++||+++.+.+.........|.
T Consensus       166 Gr~v~~g~ed~tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~  242 (825)
T KOG0267|consen  166 GRWVASGGEDNTVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVR  242 (825)
T ss_pred             CceeeccCCcceeeeecccccccccccc---cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCce
Confidence            9999999999999999999999999998   7889999999999999999999999999999999999888888889999


Q ss_pred             eEEeCCCCcEEEEecCc-eE
Q 036585          265 VIKWAPGSLMFVTGSSE-LS  283 (304)
Q Consensus       265 ~~~~~~~~~~l~s~~~d-~~  283 (304)
                      +++|+|++..+++|... .+
T Consensus       243 ~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  243 SLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             eeeecCCceeeecCchhhhh
Confidence            99999999999998877 55

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-29  Score=180.75  Aligned_cols=209  Identities=22%  Similarity=0.297  Sum_probs=183.5

Q ss_pred             eecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeC
Q 036585           52 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQ  131 (304)
Q Consensus        52 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  131 (304)
                      .+++|..+++.+.++.+|.+|++++.   |....||-..+|+.+.++.+|++.|+|++..-+.+.+++|+.|.++++||+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaK---D~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv   81 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAK---DSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV   81 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecC---CCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence            46789999999999999999999999   999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-----CCeEEEEEcC---
Q 036585          132 RAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-----EGHIHVLDSF---  203 (304)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~---  203 (304)
                      ++++++..++..                              .+|..+.|+++|++++....     .+.|.++|++   
T Consensus        82 ~tGk~la~~k~~------------------------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~  131 (327)
T KOG0643|consen   82 ETGKQLATWKTN------------------------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS  131 (327)
T ss_pred             CCCcEEEEeecC------------------------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence            999998887633                              57888999999998877654     4679999998   


Q ss_pred             ----CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce-eeeeeccCCCCceEEeCCCCcEEEEe
Q 036585          204 ----RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE-VASWMSFDTEPPVIKWAPGSLMFVTG  278 (304)
Q Consensus       204 ----~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~  278 (304)
                          ..++...+.   .+...++.+-|+|-+++|++|.+||.|.+||+++++. +.....|...|+.++++||..+++++
T Consensus       132 ~~~~s~ep~~kI~---t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~  208 (327)
T KOG0643|consen  132 SDIDSEEPYLKIP---TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITG  208 (327)
T ss_pred             hhhcccCceEEec---CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEec
Confidence                344455555   4678999999999999999999999999999999855 55668899999999999999999999


Q ss_pred             cCc--eEEeccC-Cccccccc
Q 036585          279 SSE--LSFWIPD-LSKLGAYV  296 (304)
Q Consensus       279 ~~d--~~iw~~~-~~~~~~~~  296 (304)
                      +.|  -++||.. ++.+++|.
T Consensus       209 s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  209 SKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             ccCccceeeeccceeeEEEee
Confidence            999  8999874 34444443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=7.5e-30  Score=213.70  Aligned_cols=240  Identities=18%  Similarity=0.274  Sum_probs=202.6

Q ss_pred             eEeecccCcEEEEee--CCCeEEEEecCC------------cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585           20 ILQSMEVGIYLVTAS--DDESIRLYDVTA------------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   85 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~--~d~~i~vw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~   85 (304)
                      .|..+|+|..+|||+  .|+.++||+.+.            .+.+.+...|.+.|.|+.|+|||++||+|+.   |+.|.
T Consensus        18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD---D~~v~   94 (942)
T KOG0973|consen   18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD---DRLVM   94 (942)
T ss_pred             EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC---cceEE
Confidence            578899999999999  999999998652            2345667789999999999999999999999   99999


Q ss_pred             EEEccC-------c-----------eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccce
Q 036585           86 LLSLHD-------N-----------KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA  147 (304)
Q Consensus        86 vwd~~~-------~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  147 (304)
                      ||....       +           +.+..+.+|...|..++|+|++.+|++++.|++|.+||.++.+....+.      
T Consensus        95 iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~------  168 (942)
T KOG0973|consen   95 IWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR------  168 (942)
T ss_pred             EeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee------
Confidence            999872       0           2466788999999999999999999999999999999999987766665      


Q ss_pred             eEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC---CCCCcceEE
Q 036585          148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---VSRNSTLEA  224 (304)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~i~~~  224 (304)
                                             +|.+.|..+.|.|-|++|++-+.|++|++|++.+....+.+..+-   ........+
T Consensus       169 -----------------------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~Rl  225 (942)
T KOG0973|consen  169 -----------------------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRL  225 (942)
T ss_pred             -----------------------cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeec
Confidence                                   788999999999999999999999999999988777776665321   234467789


Q ss_pred             EEcCCCcEEEEec----CCCcEEEEecCCCceeeeeeccCCCCceEEeCCC-----Cc------------EEEEecCc--
Q 036585          225 SFSPEGMFVISGS----GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPG-----SL------------MFVTGSSE--  281 (304)
Q Consensus       225 ~~s~~~~~l~~~~----~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~s~~~d--  281 (304)
                      .|||||++|++..    .-.++.|.+-.+.+.-..+.+|.+++.+++|+|.     ..            .+|+|+.|  
T Consensus       226 SWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS  305 (942)
T KOG0973|consen  226 SWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS  305 (942)
T ss_pred             ccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc
Confidence            9999999999874    2346889988777878888999999999999981     11            67889999  


Q ss_pred             eEEeccCCcc
Q 036585          282 LSFWIPDLSK  291 (304)
Q Consensus       282 ~~iw~~~~~~  291 (304)
                      +.||.....+
T Consensus       306 lSVW~T~~~R  315 (942)
T KOG0973|consen  306 LSVWNTALPR  315 (942)
T ss_pred             EEEEecCCCC
Confidence            9999885544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.1e-28  Score=172.90  Aligned_cols=243  Identities=17%  Similarity=0.270  Sum_probs=199.0

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCC--cce---eeeecccccceeEEEEccC----CCeEEEEecCCCCCceEEEE
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTA--ATC---LKTINSKKYGVDLVCFTSH----PTTVIYSSKNGWDESLRLLS   88 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~--~~~---~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~~~d~~i~vwd   88 (304)
                      .-.+.|+|+|++|++|+.|.+|++.-.+.  .+.   -..+..|.+.|..++|-.+    +..|++++.+  |..|++-|
T Consensus        92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag--dc~iy~td  169 (350)
T KOG0641|consen   92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG--DCKIYITD  169 (350)
T ss_pred             EEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC--cceEEEee
Confidence            34578899999999999999999976543  222   2457779999999999754    4467777654  89999999


Q ss_pred             ccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585           89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS  168 (304)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
                      ...++..+.+.+|++.|.++- +-++-.+++|+.|.+|++||++-..++..+...-..                      
T Consensus       170 c~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~----------------------  226 (350)
T KOG0641|consen  170 CGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD----------------------  226 (350)
T ss_pred             cCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccC----------------------
Confidence            999999999999999998763 336789999999999999999988877765422110                      


Q ss_pred             ecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          169 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       169 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                      -.-..+.|.+++..|.|++|++|-.|....+||++.++.+..+.   .|...|.++.|||...|+++++.|..|++-|++
T Consensus       227 ~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~---phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH---PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC---CCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            00123678999999999999999999999999999999999998   799999999999999999999999999999986


Q ss_pred             CC----ceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          249 SG----KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       249 ~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      ..    -++.....|...+..+.|+|..--+++.+.|  ..+|.++
T Consensus       304 gdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  304 GDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             cchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            32    1233446788888999999999888888888  9999775

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.7e-30  Score=188.74  Aligned_cols=234  Identities=19%  Similarity=0.274  Sum_probs=202.3

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc------cCc--------
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL------HDN--------   92 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~------~~~--------   92 (304)
                      ...+.+++.|.+.+||.++++.++.++.+|.+.|+++.|++.+.++++++.   |++-.||..      ...        
T Consensus       160 qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG---D~taHIW~~av~~~vP~~~a~~~hSs  236 (481)
T KOG0300|consen  160 QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG---DETAHIWKAAVNWEVPSNNAPSDHSS  236 (481)
T ss_pred             CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC---CcchHHHHHhhcCcCCCCCCCCCCCc
Confidence            468899999999999999999999999999999999999999999999998   999999962      110        


Q ss_pred             --------------------------eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc
Q 036585           93 --------------------------KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP  146 (304)
Q Consensus        93 --------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  146 (304)
                                                .++..+.+|.+.|.+..|...++.+++++.|.+..+||++++..+..+.     
T Consensus       237 EeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-----  311 (481)
T KOG0300|consen  237 EEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT-----  311 (481)
T ss_pred             hhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceecccc-----
Confidence                                      1245577899999999999999999999999999999999998877665     


Q ss_pred             eeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEE
Q 036585          147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  226 (304)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~  226 (304)
                                              +|....+.++-+|..+++++++.|-+.++||++.  .+.......+|...|+++.|
T Consensus       312 ------------------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF  365 (481)
T KOG0300|consen  312 ------------------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVF  365 (481)
T ss_pred             ------------------------CcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEE
Confidence                                    7888899999999999999999999999999983  33333333489999999999


Q ss_pred             cCCCcEEEEecCCCcEEEEecCCCc-eeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccccccc
Q 036585          227 SPEGMFVISGSGDGSVHAWSVRSGK-EVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLGAYV  296 (304)
Q Consensus       227 s~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~~~~  296 (304)
                      ..+. .+++|+.|.+|+|||+++.+ ++.++. ...+++.++.+..+..++.--++  +++|+++..++..+.
T Consensus       366 ~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP  436 (481)
T KOG0300|consen  366 NTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP  436 (481)
T ss_pred             ecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence            8765 58899999999999999865 456664 56789999999998888888777  999999999987765

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=7.4e-30  Score=194.77  Aligned_cols=233  Identities=15%  Similarity=0.243  Sum_probs=184.5

Q ss_pred             Eeeccc-CcEEEEeeCCCeEEEEecCCcc----------eeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEE
Q 036585           21 LQSMEV-GIYLVTASDDESIRLYDVTAAT----------CLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLS   88 (304)
Q Consensus        21 i~~~~~-~~~l~~~~~d~~i~vw~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd   88 (304)
                      ++.+|. ..++|+.+..+.+.|||..+..          +-.++.+|...-..++|++... .|++++.   |+.|++||
T Consensus       130 aRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~---d~~i~lwd  206 (422)
T KOG0264|consen  130 ARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD---DHTICLWD  206 (422)
T ss_pred             hhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC---CCcEEEEe
Confidence            556665 4678888899999999986422          2236889998788899999655 5666776   99999999


Q ss_pred             ccCce-------eeeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcc--eeeceEEEeccceeEecCCCeEEE
Q 036585           89 LHDNK-------YSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAE--KCQGLLRVQGRPAAAYDDQGLVFG  158 (304)
Q Consensus        89 ~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  158 (304)
                      +....       +...+.+|...|..++|++ +..+|++++.|+.+.|||+|+.  +.....                  
T Consensus       207 i~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~------------------  268 (422)
T KOG0264|consen  207 INAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV------------------  268 (422)
T ss_pred             ccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc------------------
Confidence            97542       3456789999999999998 5668999999999999999963  222211                  


Q ss_pred             ecCCCeEEEEecCCCCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCc-eeEEEEeCCCCCCcceEEEEcCC-CcEEEE
Q 036585          159 YEKGPLDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPE-GMFVIS  235 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~  235 (304)
                                 .+|.+.+++++|+|- +..||+|+.|++|.+||+|+.+ ++.++.   +|...|.++.|||. ...||+
T Consensus       269 -----------~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e---~H~dev~~V~WSPh~etvLAS  334 (422)
T KOG0264|consen  269 -----------KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE---GHEDEVFQVEWSPHNETVLAS  334 (422)
T ss_pred             -----------cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc---CCCcceEEEEeCCCCCceeEe
Confidence                       368899999999994 5678889999999999999754 444555   79999999999995 567889


Q ss_pred             ecCCCcEEEEecCCC--------------ceeeeeeccCCCCceEEeCCCCcE-EEEecCc--eEEeccC
Q 036585          236 GSGDGSVHAWSVRSG--------------KEVASWMSFDTEPPVIKWAPGSLM-FVTGSSE--LSFWIPD  288 (304)
Q Consensus       236 ~~~dg~i~v~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~d--~~iw~~~  288 (304)
                      ++.|+.+.|||+..-              +++..-.||...|..+.|+|+..+ +++.++|  +.||.+.
T Consensus       335 Sg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  335 SGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            999999999999642              123444789999999999998865 5667777  9999875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.3e-29  Score=201.49  Aligned_cols=236  Identities=16%  Similarity=0.260  Sum_probs=202.3

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc-ccccE
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG-HHDRV  105 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v  105 (304)
                      .+.+|+|.. ..|.+|+..+++.......+...|+++.|+++|.+|++|..   +|.|.|||..+.+.+..+.+ |...|
T Consensus       188 ~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~---~g~v~iwD~~~~k~~~~~~~~h~~rv  263 (484)
T KOG0305|consen  188 ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTS---DGTVQIWDVKEQKKTRTLRGSHASRV  263 (484)
T ss_pred             CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeec---CCeEEEEehhhccccccccCCcCcee
Confidence            456777754 47999999998876666666889999999999999999999   99999999999999999998 99999


Q ss_pred             EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC
Q 036585          106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG  185 (304)
Q Consensus       106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  185 (304)
                      -+++|.  +..+.+|+.|+.|..+|++..+.....                            +.+|...|..++|++|+
T Consensus       264 g~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~----------------------------~~~H~qeVCgLkws~d~  313 (484)
T KOG0305|consen  264 GSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST----------------------------LQGHRQEVCGLKWSPDG  313 (484)
T ss_pred             EEEecc--CceEEEecCCCcEEEEEEecchhhhhh----------------------------hhcccceeeeeEECCCC
Confidence            999997  668999999999999999987654431                            23688899999999999


Q ss_pred             cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEec--CCCcEEEEecCCCceeeeeeccCCC
Q 036585          186 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGS--GDGSVHAWSVRSGKEVASWMSFDTE  262 (304)
Q Consensus       186 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~  262 (304)
                      +++++|+.|+.+.|||....++...+.   .|...|.+++|+| ....||+|+  .|+.|++||..+++.+..+. -...
T Consensus       314 ~~lASGgnDN~~~Iwd~~~~~p~~~~~---~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQ  389 (484)
T KOG0305|consen  314 NQLASGGNDNVVFIWDGLSPEPKFTFT---EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQ  389 (484)
T ss_pred             CeeccCCCccceEeccCCCccccEEEe---ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCc
Confidence            999999999999999998888888888   7999999999999 667888875  79999999999999988875 5578


Q ss_pred             CceEEeCCCCcEEEEecCc----eEEeccCC-ccccccccCCC
Q 036585          263 PPVIKWAPGSLMFVTGSSE----LSFWIPDL-SKLGAYVGRNR  300 (304)
Q Consensus       263 i~~~~~~~~~~~l~s~~~d----~~iw~~~~-~~~~~~~~~~~  300 (304)
                      |.+|.|++..+-|+++...    +.||.+.. ..+..+.+|..
T Consensus       390 VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~  432 (484)
T KOG0305|consen  390 VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS  432 (484)
T ss_pred             eeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence            9999999998766665443    99999954 55667777764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.2e-28  Score=217.28  Aligned_cols=224  Identities=14%  Similarity=0.193  Sum_probs=179.8

Q ss_pred             eEeecc-cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           20 ILQSME-VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        20 ~i~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      .+.+.+ .+.+|++++.||+|++||+.+++.+..+.+|...|.+++|+| ++..|++++.   |+.|++||+.+++.+..
T Consensus       537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~---Dg~v~iWd~~~~~~~~~  613 (793)
T PLN00181        537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD---DGSVKLWSINQGVSIGT  613 (793)
T ss_pred             eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC---CCEEEEEECCCCcEEEE
Confidence            355555 478999999999999999999999999999999999999997 7889999998   99999999999988888


Q ss_pred             cccccccEEEEEEc-CCCCEEEEcccCCeEEEEeCCccee-eceEEEecc--ceeEecC-CCeEEEecCCCeEEEEec--
Q 036585           98 FKGHHDRVVLLSLC-SSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQGR--PAAAYDD-QGLVFGYEKGPLDIFSVG--  170 (304)
Q Consensus        98 ~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~--  170 (304)
                      +..+ ..+.++.|+ +++.+|++|+.|+.|++||+++... ...+..+..  ..+.+.+ ...+.+..++.+++|++.  
T Consensus       614 ~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~  692 (793)
T PLN00181        614 IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMS  692 (793)
T ss_pred             EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCC
Confidence            7744 679999995 5789999999999999999987652 333332222  2344433 334556677888888754  


Q ss_pred             -------------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC----------CCCCCcceEEEEc
Q 036585          171 -------------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----------PVSRNSTLEASFS  227 (304)
Q Consensus       171 -------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----------~~~~~~i~~~~~s  227 (304)
                                   +|...+..++|+|++.+|++|+.|+.|++|+.........+...          ..+...|.+++|+
T Consensus       693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws  772 (793)
T PLN00181        693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWR  772 (793)
T ss_pred             ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEc
Confidence                         45667888999999999999999999999998766554433211          1244569999999


Q ss_pred             CCCcEEEEecCCCcEEEEec
Q 036585          228 PEGMFVISGSGDGSVHAWSV  247 (304)
Q Consensus       228 ~~~~~l~~~~~dg~i~v~d~  247 (304)
                      |++..|++|+.||.|+||++
T Consensus       773 ~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        773 GQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCCeEEEecCCCcEEEEec
Confidence            99999999999999999996

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=6.4e-31  Score=193.32  Aligned_cols=222  Identities=19%  Similarity=0.349  Sum_probs=196.0

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeec-ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      -++.|+.|...+|+|+.||.|++|.+.+|.+++.+. .|..+|+|+.|+.|+..+++++.   |.++++--+.+|++++.
T Consensus       267 lci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf---D~tvRiHGlKSGK~LKE  343 (508)
T KOG0275|consen  267 LCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF---DQTVRIHGLKSGKCLKE  343 (508)
T ss_pred             EEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc---cceEEEeccccchhHHH
Confidence            456788889999999999999999999999999998 79999999999999999999998   99999999999999999


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc----e---eEecCCCeEEEecCCCeEEEEec
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP----A---AAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      +++|...|....|.++|..+++++.||+|++|+..+..+...++..+..    .   +.-+|...++....+.+.+.++.
T Consensus       344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q  423 (508)
T KOG0275|consen  344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ  423 (508)
T ss_pred             hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence            9999999999999999999999999999999999999998888764422    1   11244556667777777777665


Q ss_pred             CC-----------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585          171 GD-----------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD  239 (304)
Q Consensus       171 ~~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  239 (304)
                      +.           .+..-+...+|.|.++++.+.|+.++.|...+|+...++.   .|...+..++-+|..+.||+-++|
T Consensus       424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~---VhEkdvIGl~HHPHqNllAsYsED  500 (508)
T KOG0275|consen  424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP---VHEKDVIGLTHHPHQNLLASYSED  500 (508)
T ss_pred             ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee---cccccccccccCcccchhhhhccc
Confidence            42           3455667899999999999999999999999999999998   688889999999999999999999


Q ss_pred             CcEEEEe
Q 036585          240 GSVHAWS  246 (304)
Q Consensus       240 g~i~v~d  246 (304)
                      |.+++|.
T Consensus       501 gllKLWk  507 (508)
T KOG0275|consen  501 GLLKLWK  507 (508)
T ss_pred             chhhhcC
Confidence            9999994

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.2e-29  Score=179.07  Aligned_cols=234  Identities=14%  Similarity=0.185  Sum_probs=187.0

Q ss_pred             ccCcEEEEeeCCCeEEEEecCCc---ceeeeecccccceeEEEEcc--CCCeEEEEecCCCCCceEEEEccCcee--eee
Q 036585           25 EVGIYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLRLLSLHDNKY--SRY   97 (304)
Q Consensus        25 ~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~vwd~~~~~~--~~~   97 (304)
                      -.|++|||++.|++|+|+.++.+   +++.+|.+|.++|..++|..  .|..|++++.   ||.|.||.-++++-  ...
T Consensus        21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY---DgkVIiWke~~g~w~k~~e   97 (299)
T KOG1332|consen   21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY---DGKVIIWKEENGRWTKAYE   97 (299)
T ss_pred             hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeec---CceEEEEecCCCchhhhhh
Confidence            35999999999999999998754   56789999999999999987  7999999998   99999999988753  345


Q ss_pred             cccccccEEEEEEcCC--CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC
Q 036585           98 FKGHHDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD  175 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (304)
                      ...|...|.+++|.|.  |-.|++++.||.|.+.+.+....-..-+                          ....|.-.
T Consensus        98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k--------------------------i~~aH~~G  151 (299)
T KOG1332|consen   98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK--------------------------IVFAHEIG  151 (299)
T ss_pred             hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh--------------------------hhhccccc
Confidence            6689999999999984  5589999999999999887651111100                          01246778


Q ss_pred             ceEEEEecC---C-----------cEEEEeeCCCeEEEEEcCCCcee--EEEEeCCCCCCcceEEEEcCCC----cEEEE
Q 036585          176 ANVVKFSND---G-----------RLMLLTTMEGHIHVLDSFRGTLL--STYNVKPVSRNSTLEASFSPEG----MFVIS  235 (304)
Q Consensus       176 v~~~~~~~~---~-----------~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~----~~l~~  235 (304)
                      |++++|.|.   |           +.|++|+.|..|+||+..+++..  .++.   .|...|..++|.|.-    .+||+
T Consensus       152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~---~H~dwVRDVAwaP~~gl~~s~iAS  228 (299)
T KOG1332|consen  152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE---GHKDWVRDVAWAPSVGLPKSTIAS  228 (299)
T ss_pred             cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh---hcchhhhhhhhccccCCCceeeEE
Confidence            888888885   4           56999999999999999876433  3344   799999999999953    57999


Q ss_pred             ecCCCcEEEEecCCC-ce--eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          236 GSGDGSVHAWSVRSG-KE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       236 ~~~dg~i~v~d~~~~-~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      ++.||++.||..+.. ++  ...+......+..+.||+.|+.|+.++.|  +++|.-+.+
T Consensus       229 ~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  229 CSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             ecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence            999999999987532 11  22234466789999999999999988888  999977654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.5e-29  Score=191.72  Aligned_cols=233  Identities=20%  Similarity=0.265  Sum_probs=197.9

Q ss_pred             eeeeecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585           11 KVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   90 (304)
Q Consensus        11 ~~~~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~   90 (304)
                      ...+++.-.++..++.|.+|+.|+..|.|++|.+.+|+++..+..|-..|+|+.|+-|+.++++++.   ||.|.+|.+.
T Consensus        77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk---Dg~V~vW~l~  153 (476)
T KOG0646|consen   77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK---DGAVLVWLLT  153 (476)
T ss_pred             hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC---CccEEEEEEE
Confidence            3445666777888899999999989999999999999999999999999999999999999999999   9999999874


Q ss_pred             ---------CceeeeecccccccEEEEEEcCC--CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEe
Q 036585           91 ---------DNKYSRYFKGHHDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGY  159 (304)
Q Consensus        91 ---------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (304)
                               +-++.+.+..|+-+|+.+...+.  ..++++++.|.++++||+..+..+..+..+                
T Consensus       154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp----------------  217 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP----------------  217 (476)
T ss_pred             eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC----------------
Confidence                     23577889999999999988764  458999999999999999999877766533                


Q ss_pred             cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce-------------eEEEEeCCCCCC--cceEE
Q 036585          160 EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-------------LSTYNVKPVSRN--STLEA  224 (304)
Q Consensus       160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-------------~~~~~~~~~~~~--~i~~~  224 (304)
                                    ..+.+++.+|.+..+++|+.+|.|.+.++.+...             ...+....+|.+  .|+|+
T Consensus       218 --------------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL  283 (476)
T KOG0646|consen  218 --------------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL  283 (476)
T ss_pred             --------------CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence                          5789999999999999999999999988754321             011222235666  99999


Q ss_pred             EEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEE
Q 036585          225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFV  276 (304)
Q Consensus       225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  276 (304)
                      +++-||..|++|+.||.|.|||+.+.++++++....++|+.+.+.|-.+...
T Consensus       284 ais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~  335 (476)
T KOG0646|consen  284 AISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGII  335 (476)
T ss_pred             EEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccccee
Confidence            9999999999999999999999999999999877889999999977544333

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.7e-28  Score=179.85  Aligned_cols=269  Identities=19%  Similarity=0.227  Sum_probs=195.3

Q ss_pred             eecceee---EeecccCcEEEEeeCCCeEEEEecCCccee--eeec--ccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           14 LELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCL--KTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        14 ~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      +++|.+.   +.|+.||++|+|++.|++|++|++.+....  +.++  -.-+..+.+.|+||-+-+++....  ..++++
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~--g~~l~v  159 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR--GNKLCV  159 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc--CCEEEE
Confidence            3445544   567889999999999999999998863221  1111  112356789999999887777653  778999


Q ss_pred             EEccCc---eeee---------ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecC
Q 036585           87 LSLHDN---KYSR---------YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDD  152 (304)
Q Consensus        87 wd~~~~---~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~  152 (304)
                      |.+...   ....         .-+.|+-.+..+-...++.++++++.|..|.+|+++ ++.+..+.....  ...+.+|
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            987532   2111         112466677778777888999999999999999998 777766654322  2355667


Q ss_pred             CCeEEEe-------------------cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC-------Cc
Q 036585          153 QGLVFGY-------------------EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-------GT  206 (304)
Q Consensus       153 ~~~~~~~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------~~  206 (304)
                      +|.++..                   -....+++.+.+|.+.|..++|+|+...+++.+.||++++||+.-       .+
T Consensus       239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk  318 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK  318 (420)
T ss_pred             CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence            7654411                   123345667889999999999999999999999999999999741       22


Q ss_pred             eeEEEE-eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee-eccCCCCceEEeCCCCcEEEEecCc-eE
Q 036585          207 LLSTYN-VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE-LS  283 (304)
Q Consensus       207 ~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d-~~  283 (304)
                      .+++.. ......+....++++|+|+.||.+. ...+++|..++++....+ ..|...|.+|+|+++|++++++++. ++
T Consensus       319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vr  397 (420)
T KOG2096|consen  319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVR  397 (420)
T ss_pred             HhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeee
Confidence            222221 1111233344799999999888774 457999999998877666 5699999999999999999999988 77


Q ss_pred             Eec
Q 036585          284 FWI  286 (304)
Q Consensus       284 iw~  286 (304)
                      +..
T Consensus       398 v~~  400 (420)
T KOG2096|consen  398 VIR  400 (420)
T ss_pred             eec
Confidence            764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.4e-30  Score=191.53  Aligned_cols=246  Identities=16%  Similarity=0.272  Sum_probs=192.4

Q ss_pred             eeeecceeeEeeccc---C-cEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           12 VSLELSEEILQSMEV---G-IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        12 ~~~~~~~~~i~~~~~---~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      -.+.+|.+-+.++.-   . ..+++|+.||.|++||+.+.++..+++.|.+.|..+++..  ..+++++.   |.+|+.|
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgd---DKtvK~w  134 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGD---DKTVKQW  134 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecC---Ccceeee
Confidence            345777777776643   2 5689999999999999999999999999999999999976  67777777   8888888


Q ss_pred             EccC--------------------------------------ceeeeecccccccEEEEEEcCCC-CEEEEcccCCeEEE
Q 036585           88 SLHD--------------------------------------NKYSRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLL  128 (304)
Q Consensus        88 d~~~--------------------------------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i  128 (304)
                      .++.                                      ..+++.+.--.+.|.++.|+|-. ..|+++..|+.|.+
T Consensus       135 k~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL  214 (433)
T KOG0268|consen  135 KIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL  214 (433)
T ss_pred             eccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence            7432                                      11223333334567888888844 47778889999999


Q ss_pred             EeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCc-e
Q 036585          129 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-L  207 (304)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~  207 (304)
                      ||+++.+++..+...                              ..-+.++|+|.+-.|++++.|..++.||++..+ +
T Consensus       215 yD~R~~~Pl~KVi~~------------------------------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p  264 (433)
T KOG0268|consen  215 YDLRQASPLKKVILT------------------------------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP  264 (433)
T ss_pred             EecccCCccceeeee------------------------------ccccceecCccccceeeccccccceehhhhhhccc
Confidence            999999888766533                              244679999988889999999999999998643 3


Q ss_pred             eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee-ccCCCCceEEeCCCCcEEEEecCc--eEE
Q 036585          208 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM-SFDTEPPVIKWAPGSLMFVTGSSE--LSF  284 (304)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d--~~i  284 (304)
                      +..+.   .|.+.|.++.|||.|+-+++|+.|.+|+||..+.+.....+. ..-..|.++.||.|.+++++||+|  +++
T Consensus       265 ~~v~~---dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl  341 (433)
T KOG0268|consen  265 LNVHK---DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL  341 (433)
T ss_pred             chhhc---ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence            44444   789999999999999999999999999999998776544431 123468999999999999999999  999


Q ss_pred             eccCC-cccccc
Q 036585          285 WIPDL-SKLGAY  295 (304)
Q Consensus       285 w~~~~-~~~~~~  295 (304)
                      |.-.. +++..+
T Consensus       342 Wka~Aseklgv~  353 (433)
T KOG0268|consen  342 WKAKASEKLGVI  353 (433)
T ss_pred             eecchhhhcCCC
Confidence            97643 444433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=1.2e-27  Score=195.41  Aligned_cols=256  Identities=20%  Similarity=0.356  Sum_probs=205.2

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEE
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV  106 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  106 (304)
                      =+.++.|+.+|.+++|++++++.+++++++...|+++.-+|--..++.|..   +|+|.++++..++.+.+++...++|+
T Consensus       172 LNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~---~G~ViifNlK~dkil~sFk~d~g~Vt  248 (910)
T KOG1539|consen  172 LNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE---NGTVIIFNLKFDKILMSFKQDWGRVT  248 (910)
T ss_pred             eeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc---CceEEEEEcccCcEEEEEEcccccee
Confidence            467889999999999999999999999999999999999999999999998   99999999999999999994469999


Q ss_pred             EEEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEE-e-----------ccce-e-----------Eec-CCC------
Q 036585          107 LLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRV-Q-----------GRPA-A-----------AYD-DQG------  154 (304)
Q Consensus       107 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-----------~~~~-~-----------~~~-~~~------  154 (304)
                      +++|..||+ .+++++..|.+.+||++..+....... +           +.+. +           .++ ++|      
T Consensus       249 slSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR  328 (910)
T KOG1539|consen  249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLR  328 (910)
T ss_pred             EEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhee
Confidence            999999987 566777789999999987665443221 0           0000 0           000 000      


Q ss_pred             -------------------eEE----------------------------------------------------------
Q 036585          155 -------------------LVF----------------------------------------------------------  157 (304)
Q Consensus       155 -------------------~~~----------------------------------------------------------  157 (304)
                                         ..+                                                          
T Consensus       329 ~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE  408 (910)
T KOG1539|consen  329 SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENARE  408 (910)
T ss_pred             eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchh
Confidence                               000                                                          


Q ss_pred             ---------------------------------------------------------EecCCCeEEEEec----------
Q 036585          158 ---------------------------------------------------------GYEKGPLDIFSVG----------  170 (304)
Q Consensus       158 ---------------------------------------------------------~~~~~~~~~~~~~----------  170 (304)
                                                                               ++..+.+.+++++          
T Consensus       409 ~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~  488 (910)
T KOG1539|consen  409 KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD  488 (910)
T ss_pred             hhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc
Confidence                                                                     5556666666554          


Q ss_pred             --CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEe-----------------------------------
Q 036585          171 --GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-----------------------------------  213 (304)
Q Consensus       171 --~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-----------------------------------  213 (304)
                        .|..+|+.++...-++.+++++.+|.+.+||..+...+..+..                                   
T Consensus       489 ~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv  568 (910)
T KOG1539|consen  489 SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV  568 (910)
T ss_pred             CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence              3667888888888888899999999999999876653333211                                   


Q ss_pred             ---CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc---eEEec
Q 036585          214 ---KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE---LSFWI  286 (304)
Q Consensus       214 ---~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~  286 (304)
                         ..+|.+.|++++|||||++|++++.|++|++||+.++.++..+. -..+.+++.|+|+|.+|||+..|   +.+|.
T Consensus       569 vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  569 VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence               12588899999999999999999999999999999999988774 56788999999999999999988   67773

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=5.7e-30  Score=181.50  Aligned_cols=241  Identities=14%  Similarity=0.206  Sum_probs=208.4

Q ss_pred             eeeeecceeeEe---e---cccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCce
Q 036585           11 KVSLELSEEILQ---S---MEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   84 (304)
Q Consensus        11 ~~~~~~~~~~i~---~---~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i   84 (304)
                      ++.-.+|...+-   +   .|+|-+|++++.|+.-.+-+-++|.-+-++.+|++.|....++.+....++++.   |-+-
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaa---dfta   83 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAA---DFTA   83 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcc---cchh
Confidence            444555655532   3   357999999999999999999999999999999999999999999888889888   9999


Q ss_pred             EEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585           85 RLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL  164 (304)
Q Consensus        85 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (304)
                      ++||.-+|..+.++. |..-|.+++|+.|.++|++|+.+..+++||++..+....                         
T Consensus        84 kvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~-------------------------  137 (334)
T KOG0278|consen   84 KVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK-------------------------  137 (334)
T ss_pred             hhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch-------------------------
Confidence            999999999999997 999999999999999999999999999999986543211                         


Q ss_pred             EEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEE
Q 036585          165 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHA  244 (304)
Q Consensus       165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v  244 (304)
                         .+.+|.+.|..+.|....+.+++++.|++||+||.++++.+.++.    ...+|+++.++++|++|.++. .+.|.+
T Consensus       138 ---E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~----~~s~VtSlEvs~dG~ilTia~-gssV~F  209 (334)
T KOG0278|consen  138 ---EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE----FNSPVTSLEVSQDGRILTIAY-GSSVKF  209 (334)
T ss_pred             ---hhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe----cCCCCcceeeccCCCEEEEec-CceeEE
Confidence               123788999999999999999999999999999999999999998    678999999999999887764 567999


Q ss_pred             EecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          245 WSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      ||.++..+++.+. ....|.+...+|+...+++|++|  +.-||++.
T Consensus       210 wdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~T  255 (334)
T KOG0278|consen  210 WDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNT  255 (334)
T ss_pred             eccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccC
Confidence            9999999988886 44678999999999999999999  55556544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.5e-29  Score=189.25  Aligned_cols=246  Identities=16%  Similarity=0.277  Sum_probs=205.2

Q ss_pred             eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc---eeeeecccccccEEEEEEcCCCCEEEEcccCCe
Q 036585           49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN---KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRT  125 (304)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  125 (304)
                      ..+.+..|...|..+.||++|++||+++.   |.+..+|++...   +..+++.+|..+|..+.|+||.++|++++.|..
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSk---D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~  292 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASK---DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV  292 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccC---CceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence            34567789999999999999999999999   999999988654   346788899999999999999999999999999


Q ss_pred             EEEEeCCcceeeceEEEe---ccceeEecCCC--eEEEecCCCeEEEEecCC---------CCCceEEEEecCCcEEEEe
Q 036585          126 VLLWDQRAEKCQGLLRVQ---GRPAAAYDDQG--LVFGYEKGPLDIFSVGGD---------ISDANVVKFSNDGRLMLLT  191 (304)
Q Consensus       126 i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~  191 (304)
                      +++||..++.....+...   ...+.+|.|++  .+.+..+..+..|++.+.         ...|.++++++||+++++.
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v  372 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLV  372 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEE
Confidence            999999999888777654   23456788877  566778888999988763         3468899999999999999


Q ss_pred             eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCC--CceEEeC
Q 036585          192 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTE--PPVIKWA  269 (304)
Q Consensus       192 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~--i~~~~~~  269 (304)
                      +.|..|++|+..+........    ...+|++++.|.|++++++.-.+..+++||++..+.+..+.||...  +-.-+|.
T Consensus       373 ~~d~~i~l~~~e~~~dr~lis----e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg  448 (519)
T KOG0293|consen  373 TVDKKIRLYNREARVDRGLIS----EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG  448 (519)
T ss_pred             ecccceeeechhhhhhhcccc----ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence            999999999988766555444    6689999999999999999999999999999988889999888754  3333565


Q ss_pred             C-CCcEEEEecCc--eEEeccCCcc-ccccccCCCC
Q 036585          270 P-GSLMFVTGSSE--LSFWIPDLSK-LGAYVGRNRG  301 (304)
Q Consensus       270 ~-~~~~l~s~~~d--~~iw~~~~~~-~~~~~~~~~g  301 (304)
                      . +..++++||+|  ++||+-...+ +..+.||...
T Consensus       449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~  484 (519)
T KOG0293|consen  449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT  484 (519)
T ss_pred             CCCcceEEecCCCceEEEEEccCCceeEeecCCcce
Confidence            4 45899999999  8899875544 5778887643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=1.6e-26  Score=182.90  Aligned_cols=260  Identities=11%  Similarity=0.140  Sum_probs=190.2

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEE-EecCCCCCceEEEEccCceeeeecccccccE
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIY-SSKNGWDESLRLLSLHDNKYSRYFKGHHDRV  105 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v  105 (304)
                      ++.+++++.|+.+++||+.+++.+..+..+. .+..++|+|+++.+++ +..   ++.|++||..+++....+..+.. +
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~---~~~v~~~d~~~~~~~~~~~~~~~-~   75 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASD---SDTIQVIDLATGEVIGTLPSGPD-P   75 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECC---CCeEEEEECCCCcEEEeccCCCC-c
Confidence            4678899999999999999999888887665 4678999999998754 444   89999999999887776665443 5


Q ss_pred             EEEEEcCCCCEEEE-cccCCeEEEEeCCcceeeceEEEe-ccceeEecCCCeEEEec--CC-CeEEEEecC--------C
Q 036585          106 VLLSLCSSKDCFIS-GSLDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVFGYE--KG-PLDIFSVGG--------D  172 (304)
Q Consensus       106 ~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~--------~  172 (304)
                      ..+.|+|+++.+++ ++.++.+++||+++.+....+... ....+.+++++..+...  ++ .+..++...        .
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~  155 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV  155 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence            67899999987655 456899999999987766655432 23456777777544322  22 233334321        1


Q ss_pred             CCCceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCC----CCCcceEEEEcCCCcEEEEe-cCCCcEEEEe
Q 036585          173 ISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPV----SRNSTLEASFSPEGMFVISG-SGDGSVHAWS  246 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d  246 (304)
                      ......++|+|++++++++ ..++.|++||+++++....+.....    .......++|+|++++++++ +.++.+.+||
T Consensus       156 ~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d  235 (300)
T TIGR03866       156 DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD  235 (300)
T ss_pred             CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence            2345678999999988655 4689999999999887776652210    11233568899999986554 4567899999


Q ss_pred             cCCCceeeeeeccCCCCceEEeCCCCcEEEEecC-c--eEEeccCCccc
Q 036585          247 VRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSS-E--LSFWIPDLSKL  292 (304)
Q Consensus       247 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d--~~iw~~~~~~~  292 (304)
                      +++++.+..+. +...+.+++|+|++++|++++. +  +++|+.+..+.
T Consensus       236 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       236 AKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             CCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            99888766553 4567899999999999987643 3  99999977653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.3e-28  Score=188.26  Aligned_cols=235  Identities=17%  Similarity=0.189  Sum_probs=198.9

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCccee----ee-------------e-cccccceeEEEEccCCCeEEEEecCCC
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCL----KT-------------I-NSKKYGVDLVCFTSHPTTVIYSSKNGW   80 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~~~l~~~~~~~~   80 (304)
                      -.+..++++++.++++.+++|.-|++.+++..    ..             - +.|...+.+++.++|+++|++|+.   
T Consensus       146 ~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~---  222 (479)
T KOG0299|consen  146 TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGR---  222 (479)
T ss_pred             eEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCC---
Confidence            34667889999999999999999998877532    11             1 267788999999999999999998   


Q ss_pred             CCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585           81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE  160 (304)
Q Consensus        81 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (304)
                      |..|.||+..+.+.++.+++|.+.|.+++|......+++++.|+.+++|+++....+.++-                   
T Consensus       223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-------------------  283 (479)
T KOG0299|consen  223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-------------------  283 (479)
T ss_pred             CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-------------------
Confidence            9999999999999999999999999999999888899999999999999998877665553                   


Q ss_pred             CCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC
Q 036585          161 KGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG  240 (304)
Q Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  240 (304)
                                +|++.|..+....-++.+-+|+.|+++++|++... ....+.   ++.+.+-|++|-. ..++++|+.||
T Consensus       284 ----------GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifr---g~~~sidcv~~In-~~HfvsGSdnG  348 (479)
T KOG0299|consen  284 ----------GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFR---GGEGSIDCVAFIN-DEHFVSGSDNG  348 (479)
T ss_pred             ----------CCccceeeechhcccceEEeccccceeEEEecccc-ceeeee---CCCCCeeeEEEec-ccceeeccCCc
Confidence                      78889999998888888888899999999999443 333444   5788899999975 45889999999


Q ss_pred             cEEEEecCCCceeeeee-cc-----------CCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          241 SVHAWSVRSGKEVASWM-SF-----------DTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       241 ~i~v~d~~~~~~~~~~~-~~-----------~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      .|.+|++...+++.... .|           ...|++++..|...++++|+.+  +++|..+-+
T Consensus       349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            99999999888876552 12           2378999999999999999998  999988543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=2.2e-29  Score=195.03  Aligned_cols=231  Identities=16%  Similarity=0.253  Sum_probs=199.0

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      .....++||+.|++|+.-.++.|||+....  ....+....-..++++.+||.+..+++..   ||.|.|||+.+...++
T Consensus       469 RSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs---dGnI~vwDLhnq~~Vr  545 (705)
T KOG0639|consen  469 RSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS---DGNIAVWDLHNQTLVR  545 (705)
T ss_pred             eeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc---CCcEEEEEcccceeee
Confidence            346678999999999999999999998544  33445444456788999999999999998   9999999999999999


Q ss_pred             ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA  176 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  176 (304)
                      .|++|++.+.|+..+++|..|.+|+-|.+||-||+++++......                              -.+.|
T Consensus       546 qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd------------------------------F~SQI  595 (705)
T KOG0639|consen  546 QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD------------------------------FSSQI  595 (705)
T ss_pred             cccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh------------------------------hhhhh
Confidence            999999999999999999999999999999999999987765543                              22578


Q ss_pred             eEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585          177 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       177 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      .++.++|++.++++|-.++.+.+......+.....    .|+..|.++.|.+.|+++++.+.|+.+..|.+--|..+...
T Consensus       596 fSLg~cP~~dWlavGMens~vevlh~skp~kyqlh----lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs  671 (705)
T KOG0639|consen  596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLH----LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  671 (705)
T ss_pred             eecccCCCccceeeecccCcEEEEecCCccceeec----ccccEEEEEEecccCceeeecCchhhhhhccCccccceeec
Confidence            88999999999999999999999887554443333    38899999999999999999999999999999888877776


Q ss_pred             eccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585          257 MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       257 ~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~  287 (304)
                      + ...+|.++..+.|.++++||+.|  -.+|.+
T Consensus       672 k-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  672 K-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             c-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            5 45789999999999999999999  667653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6.9e-28  Score=198.67  Aligned_cols=237  Identities=14%  Similarity=0.201  Sum_probs=201.7

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCc-ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ..+.+.++|++|++++.||.|++|+.... +...++..+...|.+++.  ...+|++++.   +++|.+|.+.+++.-..
T Consensus        17 t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~---~~tv~~y~fps~~~~~i   91 (933)
T KOG1274|consen   17 TLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSE---QNTVLRYKFPSGEEDTI   91 (933)
T ss_pred             EEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeec---cceEEEeeCCCCCccce
Confidence            45788899999999999999999997765 555555556667777766  5669999998   99999999999887767


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      +...+-++.+++|+.+|++++.|+.|-.|++-++........++                             +|..+|.
T Consensus        92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-----------------------------gh~apVl  142 (933)
T KOG1274|consen   92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-----------------------------GHDAPVL  142 (933)
T ss_pred             eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-----------------------------ccCCcee
Confidence            77778899999999999999999999999999998877666554                             7889999


Q ss_pred             EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC-----CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585          178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-----SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  252 (304)
                      ++.|+|++++||+.+.||.|++||+.++....++.....     ....+..++|+|++..++....|+.|++|+..+.+.
T Consensus       143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~  222 (933)
T KOG1274|consen  143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL  222 (933)
T ss_pred             eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence            999999999999999999999999999888777653211     134567899999988888888999999999999888


Q ss_pred             eeeee--ccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          253 VASWM--SFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       253 ~~~~~--~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      ...+.  .+...+..+.|+|.|+|||+++.+  |.||+++.
T Consensus       223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            77773  344558999999999999999999  99999984

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.7e-29  Score=200.73  Aligned_cols=228  Identities=15%  Similarity=0.226  Sum_probs=188.5

Q ss_pred             Eeecc-cCcEEEEeeCCCeEEEEecCC---cceeeeecccccceeEEEEccCC-CeEEEEecCCCCCceEEEEccCceee
Q 036585           21 LQSME-VGIYLVTASDDESIRLYDVTA---ATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        21 i~~~~-~~~~l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      |.|.. +.++|||++..|.|.+||+..   .+++..+..|+..+++++|++.. .+|++|+.   ||.|++||++..+..
T Consensus        93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ---Dg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ---DGTVKCWDLRSKKSK  169 (839)
T ss_pred             cccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCC---CceEEEEeeeccccc
Confidence            44442 368999999999999999987   66778899999999999999855 56677777   999999999999999


Q ss_pred             eecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585           96 RYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS  174 (304)
Q Consensus        96 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (304)
                      .++.+....|..+.|+| .+.+|+++...|.+++||+|....-..                            .+..|.+
T Consensus       170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~----------------------------k~~AH~G  221 (839)
T KOG0269|consen  170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK----------------------------KLTAHNG  221 (839)
T ss_pred             ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH----------------------------HhhcccC
Confidence            99998899999999999 677899999999999999987543211                            1236889


Q ss_pred             CceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcE-EEEec--CCCcEEEEecCCC-
Q 036585          175 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF-VISGS--GDGSVHAWSVRSG-  250 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~--~dg~i~v~d~~~~-  250 (304)
                      +|.++.|+|++.+||+|+.|+.|+|||+.+.+.......  ....++.+++|-|+..+ ||+++  .|-.|+|||++.. 
T Consensus       222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY  299 (839)
T KOG0269|consen  222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY  299 (839)
T ss_pred             ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--eecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence            999999999999999999999999999987655444433  25679999999997765 55554  5778999999764 


Q ss_pred             ceeeeeeccCCCCceEEeCC-CCcEEEEecCc
Q 036585          251 KEVASWMSFDTEPPVIKWAP-GSLMFVTGSSE  281 (304)
Q Consensus       251 ~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d  281 (304)
                      -+..++..|...++.++|.. |-..|.+++.|
T Consensus       300 IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD  331 (839)
T KOG0269|consen  300 IPYATFLEHTDSVTGIAWDSGDRINLWSCSKD  331 (839)
T ss_pred             ccceeeeccCccccceeccCCCceeeEeecCc
Confidence            34677889999999999966 55678888888

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1e-28  Score=198.85  Aligned_cols=248  Identities=12%  Similarity=0.208  Sum_probs=209.9

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEcc---CCCeEEEEecCCCCCceEEEEccC-c
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS---HPTTVIYSSKNGWDESLRLLSLHD-N   92 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~~~d~~i~vwd~~~-~   92 (304)
                      .-..+..+|+|++||+|..-|.++||++...+....+..|...|.|+.++.   ..++|++++.   |..|.|||+.. -
T Consensus       461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr---dRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR---DRLIHVYDVKRNY  537 (1080)
T ss_pred             ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC---CceEEEEeccccc
Confidence            445788999999999999999999999999999999999999999999986   3467888888   99999999964 3


Q ss_pred             eeeeecccccccEEEEEEcCCC--CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           93 KYSRYFKGHHDRVVLLSLCSSK--DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      .+++++.+|...|+++.|.-+|  ..+++++.|+.|.+--.+.......+..+...                        
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t------------------------  593 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT------------------------  593 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc------------------------
Confidence            5778899999999999998876  68999999987765322211111111111000                        


Q ss_pred             CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585          171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG  250 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~  250 (304)
                      -....+..++..|..+++++++.|..|+|||+.+++..+.|+....+++....+...|.|.||++.+.|.++.++|..++
T Consensus       594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg  673 (1080)
T KOG1408|consen  594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG  673 (1080)
T ss_pred             cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence            12245778999999999999999999999999999999999988888888999999999999999999999999999999


Q ss_pred             ceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          251 KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       251 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      +++.++.+|...|+.+.|.+|.+.|++.+.|  |.||.+....
T Consensus       674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~m  716 (1080)
T KOG1408|consen  674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTM  716 (1080)
T ss_pred             hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhH
Confidence            9999999999999999999999999999999  7788776543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.6e-28  Score=177.88  Aligned_cols=265  Identities=17%  Similarity=0.270  Sum_probs=194.0

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      +...++|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|.+++||++|+.|++++.   |..|.+||+..|.+++
T Consensus        25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~---D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR---DWSIKLWDLLKGSPLK  101 (405)
T ss_pred             ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC---CceeEEEeccCCCcee
Confidence            3567899999999999999999999999999988999999999999999999999999999   9999999999999888


Q ss_pred             ecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEecc-------ceeEecCCCe--EEEecCCCeEE
Q 036585           97 YFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------PAAAYDDQGL--VFGYEKGPLDI  166 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~  166 (304)
                      .+. ...+|+.+.|+|.. +.+++.-.+..-.+-++..+.. ..+.....       ....++..+.  +.+...|.+.+
T Consensus       102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv  179 (405)
T KOG1273|consen  102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV  179 (405)
T ss_pred             EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence            887 67899999999843 3333333333344444433211 11111000       0112444443  33444455555


Q ss_pred             EEecC----------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-------cee--EEEEeCCCCCCcceEEEEc
Q 036585          167 FSVGG----------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-------TLL--STYNVKPVSRNSTLEASFS  227 (304)
Q Consensus       167 ~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-------~~~--~~~~~~~~~~~~i~~~~~s  227 (304)
                      ++...          ....|..+.++..|++|++-+.|..|+.|+++.-       ++.  ..++- ...+.+-.+++||
T Consensus       180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD-vVNk~~Wk~ccfs  258 (405)
T KOG1273|consen  180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD-VVNKLQWKKCCFS  258 (405)
T ss_pred             EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH-HHhhhhhhheeec
Confidence            54332          1267788999999999999999999999997621       111  11110 0123344578999


Q ss_pred             CCCcEEEEecC-CCcEEEEecCCCceeeeeeccC-CCCceEEeCCCCcEEEEecCc-eEEecc
Q 036585          228 PEGMFVISGSG-DGSVHAWSVRSGKEVASWMSFD-TEPPVIKWAPGSLMFVTGSSE-LSFWIP  287 (304)
Q Consensus       228 ~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d-~~iw~~  287 (304)
                      .+|.|+++++. ...++||.-..|.+++.+.|.. .....+.|+|-...+++-..+ ++||..
T Consensus       259 ~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~  321 (405)
T KOG1273|consen  259 GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAV  321 (405)
T ss_pred             CCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEe
Confidence            99999988863 4579999999999999998776 457789999999999998777 999964

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=6.8e-28  Score=184.75  Aligned_cols=238  Identities=12%  Similarity=0.167  Sum_probs=195.1

Q ss_pred             CcEEEEeeC-CCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE
Q 036585           27 GIYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV  105 (304)
Q Consensus        27 ~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v  105 (304)
                      ++|++++.. ...+.+|.+..........--.++|.+++-+|+|.+|+.++.   .+.|++|.+.+|..+..+.+|-..|
T Consensus        50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i---~g~lYlWelssG~LL~v~~aHYQ~I  126 (476)
T KOG0646|consen   50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTI---SGNLYLWELSSGILLNVLSAHYQSI  126 (476)
T ss_pred             hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecc---cCcEEEEEeccccHHHHHHhhccce
Confidence            456666654 346889998766555544445568999999999999999987   9999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC-
Q 036585          106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND-  184 (304)
Q Consensus       106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  184 (304)
                      +|+.|+-|+.+|++|+.||.|.+|++..--..  ..                  +.....+..+..|.-+|+++...+. 
T Consensus       127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a--~~------------------~~~~~p~~~f~~HtlsITDl~ig~Gg  186 (476)
T KOG0646|consen  127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA--DN------------------DHSVKPLHIFSDHTLSITDLQIGSGG  186 (476)
T ss_pred             eEEEEeCCCcEEEecCCCccEEEEEEEeeccc--cc------------------CCCccceeeeccCcceeEEEEecCCC
Confidence            99999999999999999999999986432110  00                  0012234445578889999888765 


Q ss_pred             -CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc------------
Q 036585          185 -GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK------------  251 (304)
Q Consensus       185 -~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~------------  251 (304)
                       ..++++++.|.++++||+..+..+.++.    ....+.+++.+|.++.+++|+++|.|.+.++....            
T Consensus       187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~  262 (476)
T KOG0646|consen  187 TNARLYTASEDRTIKLWDLSLGVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH  262 (476)
T ss_pred             ccceEEEecCCceEEEEEeccceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccc
Confidence             4679999999999999999999999987    56889999999999999999999999998875422            


Q ss_pred             ----eeeeeeccCC--CCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          252 ----EVASWMSFDT--EPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       252 ----~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                          .+..+.+|.+  +|+|++.+-||..|++|+.|  +.||++...+
T Consensus       263 ~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  263 EENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             cccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence                2455678888  99999999999999999999  9999986544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.9e-28  Score=193.18  Aligned_cols=245  Identities=21%  Similarity=0.305  Sum_probs=200.1

Q ss_pred             ceeeeecceeeEee---cccCcEEEEeeCCCeEEEEecCCc--ceeeeecccccceeEEEE-ccCCCeEEEEecCCCCCc
Q 036585           10 DKVSLELSEEILQS---MEVGIYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCF-TSHPTTVIYSSKNGWDES   83 (304)
Q Consensus        10 ~~~~~~~~~~~i~~---~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~d~~   83 (304)
                      ...+++.|.+-+.-   ..+|+.|+++|.|-+|++|+...+  -+..++..|...|.|++. .++...+++|+-   |+.
T Consensus        65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGL---D~~  141 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGL---DRK  141 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCC---Ccc
Confidence            34556666655432   345889999999999999999877  577889999999999999 778888888887   999


Q ss_pred             eEEEEccCce--ee--------eecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecC
Q 036585           84 LRLLSLHDNK--YS--------RYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD  152 (304)
Q Consensus        84 i~vwd~~~~~--~~--------~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  152 (304)
                      |.+||++++.  .+        ..+. ++..+|++++.++.+..+++|+..+.+++||.++.+.+..++           
T Consensus       142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-----------  210 (735)
T KOG0308|consen  142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-----------  210 (735)
T ss_pred             EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-----------
Confidence            9999999772  22        2333 788899999999999999999999999999999987765554           


Q ss_pred             CCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcE
Q 036585          153 QGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  232 (304)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  232 (304)
                                        +|...|..+..++||..+++++.||+|++||+...+++.++.   .|...+.++..+|+-.+
T Consensus       211 ------------------GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~---vH~e~VWaL~~~~sf~~  269 (735)
T KOG0308|consen  211 ------------------GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI---VHKEGVWALQSSPSFTH  269 (735)
T ss_pred             ------------------ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE---eccCceEEEeeCCCcce
Confidence                              789999999999999999999999999999999999999998   68888999999999999


Q ss_pred             EEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCc--EEEEecCceEEeccCC
Q 036585          233 VISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL--MFVTGSSELSFWIPDL  289 (304)
Q Consensus       233 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~d~~iw~~~~  289 (304)
                      +++|+.||.|+.-|+++......+-....+|..+..+...+  +++|...+|+=|....
T Consensus       270 vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  270 VYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             EEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence            99999999999999998644333434556777777764332  4444444477775543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.3e-26  Score=160.51  Aligned_cols=240  Identities=15%  Similarity=0.222  Sum_probs=189.8

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCC------c-----c----eeeeecccccceeEEEEccCCCeEEEEecCCCCCc
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTA------A-----T----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   83 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~------~-----~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~   83 (304)
                      ..+.|.|.|.+.++|+...++||--...      +     +    ....-+.|.+.|+|.+|+|+|..+++|+.   |.+
T Consensus        36 rav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn---dk~  112 (350)
T KOG0641|consen   36 RAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN---DKT  112 (350)
T ss_pred             eeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC---Cce
Confidence            4588999999999999999999865431      1     0    11223468899999999999999999998   999


Q ss_pred             eEEEEccCcee-----eeecccccccEEEEEEcCC----CCEEEEcc-cCCeEEEEeCCcceeeceEEEeccceeEecCC
Q 036585           84 LRLLSLHDNKY-----SRYFKGHHDRVVLLSLCSS----KDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ  153 (304)
Q Consensus        84 i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  153 (304)
                      |++...+...+     -..+.-|.+.|..++|..+    +..|++++ .|..|++-|..+++....+.            
T Consensus       113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s------------  180 (350)
T KOG0641|consen  113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS------------  180 (350)
T ss_pred             EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec------------
Confidence            99987764322     2345668999999999743    44677655 46677777777776654443            


Q ss_pred             CeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC----CCCCcceEEEEcCC
Q 036585          154 GLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP----VSRNSTLEASFSPE  229 (304)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~~~i~~~~~s~~  229 (304)
                                       +|.+-|.++ ++=+|-.+++|+.|.+|++||++-..++.++....    .....|.+++..|.
T Consensus       181 -----------------ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps  242 (350)
T KOG0641|consen  181 -----------------GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS  242 (350)
T ss_pred             -----------------CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence                             566666544 34467889999999999999999888777765221    12357899999999


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          230 GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       230 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      |++|++|-.|....+||++.++.++.+..|...|.++.|+|...++.+++.|  |++-++....
T Consensus       243 grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl  306 (350)
T KOG0641|consen  243 GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL  306 (350)
T ss_pred             cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence            9999999999999999999999999999999999999999999999999999  7877776544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=4.5e-27  Score=188.45  Aligned_cols=233  Identities=18%  Similarity=0.229  Sum_probs=196.5

Q ss_pred             eeeecceeeEee----c-ccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           12 VSLELSEEILQS----M-EVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        12 ~~~~~~~~~i~~----~-~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      ..++++.+.+..    . .++-.+++|+.|.++.+|...+..++..+.+|...|.+++...++. +++|+-   |.++++
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSW---D~Takv  126 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSW---DSTAKV  126 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEeccc---ccceEE
Confidence            345556666554    2 2345699999999999999999999999999999999999888887 888886   999999


Q ss_pred             EEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585           87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI  166 (304)
Q Consensus        87 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (304)
                      |..  +++...+++|+..|+++..-|++ .+++|+.|.+|++|.-  ++..+++.                         
T Consensus       127 W~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-------------------------  176 (745)
T KOG0301|consen  127 WRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-------------------------  176 (745)
T ss_pred             ecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-------------------------
Confidence            976  45666799999999999999988 8999999999999985  55555554                         


Q ss_pred             EEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEe
Q 036585          167 FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS  246 (304)
Q Consensus       167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d  246 (304)
                          +|...|+.+++-+++. |++++.||.|++|++ +++.+.++.   +|...+.++...+++..++++++|++++||+
T Consensus       177 ----gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~  247 (745)
T KOG0301|consen  177 ----GHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYSISMALSDGLIVSTGEDRTLRIWK  247 (745)
T ss_pred             ----cchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee---ccceEEEEEEecCCCCeEEEecCCceEEEee
Confidence                7889999999998765 889999999999998 788888887   7999999999888889999999999999998


Q ss_pred             cCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCC
Q 036585          247 VRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       247 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~  289 (304)
                      ..  ++.+.+.-....|+++.+-++|..++.+|+. ++||..+-
T Consensus       248 ~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  248 KD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             cC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence            65  7777776555689999999998876666555 88887663

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.3e-27  Score=180.59  Aligned_cols=221  Identities=21%  Similarity=0.308  Sum_probs=180.1

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ...+.+-++++++++++.|+.+++|++...+...++.+|++.|+++.|......+++++.   |.+|++||+....+.++
T Consensus       222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~---DRtiK~WDl~k~~C~kt  298 (459)
T KOG0288|consen  222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSA---DRTIKLWDLQKAYCSKT  298 (459)
T ss_pred             cceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccc---cchhhhhhhhhhheecc
Confidence            445677788999999999999999999999999999999999999999988888999988   99999999999887776


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc-eeEecCCC--eEEEecCCCeEEEEecC---
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQG--LVFGYEKGPLDIFSVGG---  171 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~---  171 (304)
                      +. ....+..+..+  ...+++|-.|++|++||.++..........+.. .+..+.++  .+....+..+.++++..   
T Consensus       299 ~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI  375 (459)
T KOG0288|consen  299 VL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI  375 (459)
T ss_pred             cc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence            65 33445555554  557889999999999999999888877766533 33444444  33344555666665543   


Q ss_pred             ----------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCc
Q 036585          172 ----------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS  241 (304)
Q Consensus       172 ----------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  241 (304)
                                .....+.+.|||++.|+++|+.||.|+||++.++++...+.... ....|++++|+|.|.+|++++.++.
T Consensus       376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~-s~~aI~s~~W~~sG~~Llsadk~~~  454 (459)
T KOG0288|consen  376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST-SNAAITSLSWNPSGSGLLSADKQKA  454 (459)
T ss_pred             EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC-CCcceEEEEEcCCCchhhcccCCcc
Confidence                      22457889999999999999999999999999999998888532 2237999999999999999999999


Q ss_pred             EEEE
Q 036585          242 VHAW  245 (304)
Q Consensus       242 i~v~  245 (304)
                      +.+|
T Consensus       455 v~lW  458 (459)
T KOG0288|consen  455 VTLW  458 (459)
T ss_pred             eEec
Confidence            9998

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=7.7e-29  Score=199.39  Aligned_cols=221  Identities=19%  Similarity=0.372  Sum_probs=195.6

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEE
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV  106 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  106 (304)
                      +.+++....+-.+++||.+.      +..|...+.++..-..++.+++|+.   |..+.+|.+.....+..+.+|..+|.
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~---~~k~~L~~i~kp~~i~S~~~hespIe   74 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGE---DEKVNLWAIGKPNAITSLTGHESPIE   74 (825)
T ss_pred             ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCC---ceeeccccccCCchhheeeccCCcce
Confidence            34455555566678888643      3457777888887667788888887   99999999988877888999999999


Q ss_pred             EEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCc
Q 036585          107 LLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGR  186 (304)
Q Consensus       107 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (304)
                      ++.|++...+|++|+.+|+|++||++..+.++.+.                             +|...+..+.|+|-+.
T Consensus        75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-----------------------------gh~~~~~sv~f~P~~~  125 (825)
T KOG0267|consen   75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-----------------------------GHLLNITSVDFHPYGE  125 (825)
T ss_pred             eeecCcchhhhcccccCCceeeeehhhhhhhhhhh-----------------------------ccccCcceeeeccceE
Confidence            99999999999999999999999999887766553                             6778899999999999


Q ss_pred             EEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceE
Q 036585          187 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVI  266 (304)
Q Consensus       187 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  266 (304)
                      +++.|+.|+.+++||.+...+...+.   +|...+..+.|+|+|++++.+++|..++|||+..|+....|..|.+.+..+
T Consensus       126 ~~a~gStdtd~~iwD~Rk~Gc~~~~~---s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sl  202 (825)
T KOG0267|consen  126 FFASGSTDTDLKIWDIRKKGCSHTYK---SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSL  202 (825)
T ss_pred             EeccccccccceehhhhccCceeeec---CCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccccccc
Confidence            99999999999999999888888888   688889999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcEEEEecCc--eEEeccC
Q 036585          267 KWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       267 ~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      .|+|..-++++|+.|  +++|+++
T Consensus       203 e~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  203 EFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             ccCchhhhhccCCCCceeeeeccc
Confidence            999999999999999  9999988

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.3e-27  Score=192.26  Aligned_cols=244  Identities=20%  Similarity=0.294  Sum_probs=189.3

Q ss_pred             eeeeecceeeEeecccCcEEEEeeCCCeEEEEecCCcc----eeeeeccc---ccceeEEEEcc-CCCeEEEEecCCCCC
Q 036585           11 KVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAAT----CLKTINSK---KYGVDLVCFTS-HPTTVIYSSKNGWDE   82 (304)
Q Consensus        11 ~~~~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~----~~~~~~~~---~~~v~~~~~~~-~~~~l~~~~~~~~d~   82 (304)
                      ...++.+..+|...++-..++.++.. .++||.+....    +.......   ...+..+.|.. +.++|++++.   .|
T Consensus        35 ~~~~k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~---nG  110 (839)
T KOG0269|consen   35 NCKLKAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST---NG  110 (839)
T ss_pred             eeecccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC---CC
Confidence            34467788889999998888888864 68888776432    21111111   12455677775 4567888887   99


Q ss_pred             ceEEEEccC---ceeeeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585           83 SLRLLSLHD---NKYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG  158 (304)
Q Consensus        83 ~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (304)
                      .|.+||+..   .+.+..|..|...+.++.|++ ...+|++|++||+|++||++..+....+.                 
T Consensus       111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-----------------  173 (839)
T KOG0269|consen  111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-----------------  173 (839)
T ss_pred             cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-----------------
Confidence            999999987   567778999999999999998 55689999999999999999888776665                 


Q ss_pred             ecCCCeEEEEecCCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCc-eeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585          159 YEKGPLDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                                  +....|+.++|+| .+.+|+++...|.+++||++... +...+.   .|.++|.++.|+|++.+||+|
T Consensus       174 ------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~---AH~GpV~c~nwhPnr~~lATG  238 (839)
T KOG0269|consen  174 ------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT---AHNGPVLCLNWHPNREWLATG  238 (839)
T ss_pred             ------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh---cccCceEEEeecCCCceeeec
Confidence                        2345789999999 46789999999999999998653 344455   799999999999999999999


Q ss_pred             cCCCcEEEEecCCCceeeee-eccCCCCceEEeCCCCc-EEEEecCc----eEEeccCCc
Q 036585          237 SGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPGSL-MFVTGSSE----LSFWIPDLS  290 (304)
Q Consensus       237 ~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~l~s~~~d----~~iw~~~~~  290 (304)
                      +.|+.|+|||+.+.+..... .....++.+++|-|+.+ +|++++.-    |+||++...
T Consensus       239 GRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  239 GRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             CCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence            99999999999865543222 22457899999999875 56666543    899988654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.9e-25  Score=162.05  Aligned_cols=247  Identities=15%  Similarity=0.218  Sum_probs=200.2

Q ss_pred             ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEccc--CCe
Q 036585           48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL--DRT  125 (304)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~  125 (304)
                      ++.+.+......|.++.|+++|..+++++.   |.++++||..++++++++..+...+..+.|......++.++.  |.+
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~---dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSE---DDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecC---CCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence            344455555678999999999999999888   999999999999999999888888999999877777777765  889


Q ss_pred             EEEEeCCcceeeceEEEeccce--eEecCC--CeEEEecCCCeEEEEecCCC-------CCceEEEEecCCcEEEEeeCC
Q 036585          126 VLLWDQRAEKCQGLLRVQGRPA--AAYDDQ--GLVFGYEKGPLDIFSVGGDI-------SDANVVKFSNDGRLMLLTTME  194 (304)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~d  194 (304)
                      |+..++.+.+.++.+..+...+  +..+|.  ..+-+..++.+++|+++.+.       ..-...+|+|+|-++|++...
T Consensus        82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCC
Confidence            9999999999999998776654  344444  35556778899999998533       233467999999999999988


Q ss_pred             CeEEEEEcCCC--ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCC---ceEEeC
Q 036585          195 GHIHVLDSFRG--TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP---PVIKWA  269 (304)
Q Consensus       195 g~i~~~d~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i---~~~~~~  269 (304)
                      ..|++||++.-  .+..++..........+.+.|||||++|+.+...+.+++.|.-+|..+..+..+...-   -...|.
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence            89999999863  4556666544456788999999999999999999999999999999988887665443   577899


Q ss_pred             CCCcEEEEecCc--eEEeccCCc-ccccccc
Q 036585          270 PGSLMFVTGSSE--LSFWIPDLS-KLGAYVG  297 (304)
Q Consensus       270 ~~~~~l~s~~~d--~~iw~~~~~-~~~~~~~  297 (304)
                      ||++++++|+.|  +.+|+.+.. ++..+.+
T Consensus       242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             CCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence            999999999998  888988553 3444444

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=1.1e-27  Score=185.72  Aligned_cols=230  Identities=13%  Similarity=0.226  Sum_probs=191.3

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecCCc---ceeeeecc--cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVTAA---TCLKTINS--KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      +..+...++++||+. |.|+|||+...   .++..+..  ....+.++.+.||++.|++|+.   -.++.|||+....+.
T Consensus       425 vtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe---astlsiWDLAapTpr  500 (705)
T KOG0639|consen  425 VTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE---ASTLSIWDLAAPTPR  500 (705)
T ss_pred             EEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc---cceeeeeeccCCCcc
Confidence            455667889999986 67999998743   23333332  3457889999999999999998   889999999876543


Q ss_pred             e--ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585           96 R--YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI  173 (304)
Q Consensus        96 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                      .  .+.......++++.+||.+..+++..||.|.|||+.+...++.+.                             +|.
T Consensus       501 ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-----------------------------Ght  551 (705)
T KOG0639|consen  501 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----------------------------GHT  551 (705)
T ss_pred             hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-----------------------------CCC
Confidence            2  233233467889999999999999999999999999887766664                             889


Q ss_pred             CCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCcee
Q 036585          174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV  253 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~  253 (304)
                      ..+.||.+++||..|.+|+-|.+|+.||+++++.+....    ....|.++.++|++.+|+.|.+++.+.|..... ...
T Consensus       552 DGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~k  626 (705)
T KOG0639|consen  552 DGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEK  626 (705)
T ss_pred             CCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh----hhhhheecccCCCccceeeecccCcEEEEecCC-ccc
Confidence            999999999999999999999999999999998877765    567899999999999999999999999988643 445


Q ss_pred             eeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          254 ASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       254 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      ..+..|...|.++.|.+.|+++++.+.|  +..|...
T Consensus       627 yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtP  663 (705)
T KOG0639|consen  627 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  663 (705)
T ss_pred             eeecccccEEEEEEecccCceeeecCchhhhhhccCc
Confidence            6677899999999999999999999999  8888653

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=1.3e-26  Score=173.50  Aligned_cols=233  Identities=16%  Similarity=0.284  Sum_probs=179.8

Q ss_pred             Eeeccc--CcEEEEeeCCCeEEEEecCC----------------cceeeeecccccceeEEEEccCCC-eEEEEecCCCC
Q 036585           21 LQSMEV--GIYLVTASDDESIRLYDVTA----------------ATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWD   81 (304)
Q Consensus        21 i~~~~~--~~~l~~~~~d~~i~vw~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d   81 (304)
                      +...+.  ..+.++-+..|.|.||++..                .+++.++.+|...-+.++|||-.. .|++|..   -
T Consensus       157 vr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc---~  233 (440)
T KOG0302|consen  157 VRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC---V  233 (440)
T ss_pred             eeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCcc---c
Confidence            444444  35677778899999999742                356788899999999999999443 4777777   8


Q ss_pred             CceEEEEccCceee---eecccccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEE
Q 036585           82 ESLRLLSLHDNKYS---RYFKGHHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF  157 (304)
Q Consensus        82 ~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (304)
                      +.|++|...++.-.   ..+.+|+..|..++|+|. ...|++|+.||.|+|||+|.+.....+..               
T Consensus       234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---------------  298 (440)
T KOG0302|consen  234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---------------  298 (440)
T ss_pred             cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---------------
Confidence            89999999887532   346679999999999995 45899999999999999998854433321               


Q ss_pred             EecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC---CceeEEEEeCCCCCCcceEEEEcC-CCcEE
Q 036585          158 GYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---GTLLSTYNVKPVSRNSTLEASFSP-EGMFV  233 (304)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l  233 (304)
                                  +.|.+.|+.+.|+....+|++|+.||+++|||+++   ++++..+.   .|..+|+++.|+| +...|
T Consensus       299 ------------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk---~Hk~pItsieW~p~e~s~i  363 (440)
T KOG0302|consen  299 ------------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK---YHKAPITSIEWHPHEDSVI  363 (440)
T ss_pred             ------------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE---eccCCeeEEEeccccCceE
Confidence                        25788999999999888999999999999999975   56677777   6999999999999 45678


Q ss_pred             EEecCCCcEEEEecCCCce----------------eeeeecc--CCCCceEEeCCCC-cEEEEecCc-eEEec
Q 036585          234 ISGSGDGSVHAWSVRSGKE----------------VASWMSF--DTEPPVIKWAPGS-LMFVTGSSE-LSFWI  286 (304)
Q Consensus       234 ~~~~~dg~i~v~d~~~~~~----------------~~~~~~~--~~~i~~~~~~~~~-~~l~s~~~d-~~iw~  286 (304)
                      ++++.|..|.+||+.--.-                .+-+--|  ...+..+.|+++- .++++.+.| +.||.
T Consensus       364 aasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  364 AASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             EeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence            8888999999999853110                0111123  3457889999864 366666666 77764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.4e-25  Score=163.83  Aligned_cols=256  Identities=12%  Similarity=0.196  Sum_probs=188.5

Q ss_pred             cceee---EeecccCcEEEEeeCCCeEEEEecCC----cceeeeecccccceeEEEEcc--CCCeEEEEecCCCCCceEE
Q 036585           16 LSEEI---LQSMEVGIYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        16 ~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~v   86 (304)
                      +|.+.   +.+...|+++|+++.|++++|||.++    ..+....+.|.+.|..+.|.+  -|+.+++++.   |+++.|
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~---Drtv~i   87 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY---DRTVSI   87 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec---CCceee
Confidence            44444   45556799999999999999999653    356677889999999999976  4788999998   999999


Q ss_pred             EEccCc---------eeeeecccccccEEEEEEcC--CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCe
Q 036585           87 LSLHDN---------KYSRYFKGHHDRVVLLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL  155 (304)
Q Consensus        87 wd~~~~---------~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  155 (304)
                      |.-...         ....++......|+.+.|.|  -|-.+++++.||.+|||+.-....+.............+|   
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p---  164 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP---  164 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC---
Confidence            976321         12345566678999999998  4668999999999999987655443332221111111111   


Q ss_pred             EEEecCCCeEEEEecCCCCCceEEEEecC---CcEEEEeeCC-----CeEEEEEcCCCc-eeEEEEeCCCCCCcceEEEE
Q 036585          156 VFGYEKGPLDIFSVGGDISDANVVKFSND---GRLMLLTTME-----GHIHVLDSFRGT-LLSTYNVKPVSRNSTLEASF  226 (304)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d-----g~i~~~d~~~~~-~~~~~~~~~~~~~~i~~~~~  226 (304)
                                   ...+..+..|+.|+|.   ..+|++|+.+     +.++||....+. ........+.+..+|+.++|
T Consensus       165 -------------p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w  231 (361)
T KOG2445|consen  165 -------------PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW  231 (361)
T ss_pred             -------------cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence                         1135567788999884   4678888876     578888765432 33333333479999999999


Q ss_pred             cCC----CcEEEEecCCCcEEEEecCCC--------------------ceeeeeeccCCCCceEEeCCCCcEEEEecCc-
Q 036585          227 SPE----GMFVISGSGDGSVHAWSVRSG--------------------KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-  281 (304)
Q Consensus       227 s~~----~~~l~~~~~dg~i~v~d~~~~--------------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-  281 (304)
                      .|+    -..||+++.|| |+||.++..                    +.+..+..|.+.|..+.|+-.|..|++.+.| 
T Consensus       232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG  310 (361)
T KOG2445|consen  232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG  310 (361)
T ss_pred             ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc
Confidence            995    35799999999 999998731                    1355568899999999999999999999999 


Q ss_pred             -eEEeccCCcc
Q 036585          282 -LSFWIPDLSK  291 (304)
Q Consensus       282 -~~iw~~~~~~  291 (304)
                       +|+|.-+...
T Consensus       311 ~VRLWkany~n  321 (361)
T KOG2445|consen  311 CVRLWKANYNN  321 (361)
T ss_pred             eeeehhhhhhh
Confidence             9999765543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=1.1e-26  Score=168.82  Aligned_cols=193  Identities=19%  Similarity=0.305  Sum_probs=156.6

Q ss_pred             CcEEEEeeCCCeEEEEecCCcce---------------eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC
Q 036585           27 GIYLVTASDDESIRLYDVTAATC---------------LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   91 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~   91 (304)
                      |+|+++|+.||.|.|||++....               ...-.+|+..|..+.|-|-..-+++.++  +|.+++|||.++
T Consensus        56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS--FDhtlKVWDtnT  133 (397)
T KOG4283|consen   56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS--FDHTLKVWDTNT  133 (397)
T ss_pred             ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc--ccceEEEeeccc
Confidence            89999999999999999975321               0112368889999999997766665554  399999999999


Q ss_pred             ceeeeecccccccEEEEEEcCC---CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585           92 NKYSRYFKGHHDRVVLLSLCSS---KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS  168 (304)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
                      .+....|+ ..+.|++-+++|-   -.++++|..+-.|++-|+.++.....+.                           
T Consensus       134 lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls---------------------------  185 (397)
T KOG4283|consen  134 LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS---------------------------  185 (397)
T ss_pred             ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec---------------------------
Confidence            98888777 6788999999983   3367788888999999999998876664                           


Q ss_pred             ecCCCCCceEEEEecCCcE-EEEeeCCCeEEEEEcCCC-ceeEE-----------EEeCCCCCCcceEEEEcCCCcEEEE
Q 036585          169 VGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRG-TLLST-----------YNVKPVSRNSTLEASFSPEGMFVIS  235 (304)
Q Consensus       169 ~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~-~~~~~-----------~~~~~~~~~~i~~~~~s~~~~~l~~  235 (304)
                        +|.+.|.++.|+|...+ |++|+.||.|++||++.. .+...           .+..+.|.+.+..++|+.++.++++
T Consensus       186 --GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~  263 (397)
T KOG4283|consen  186 --GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS  263 (397)
T ss_pred             --cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence              88999999999998776 667899999999999754 22222           2223467888999999999999999


Q ss_pred             ecCCCcEEEEecCCCc
Q 036585          236 GSGDGSVHAWSVRSGK  251 (304)
Q Consensus       236 ~~~dg~i~v~d~~~~~  251 (304)
                      ++.|..+++|+..+|+
T Consensus       264 ~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  264 CGTDDRIRVWNMESGR  279 (397)
T ss_pred             ccCccceEEeecccCc
Confidence            9999999999998765

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=7.6e-28  Score=179.15  Aligned_cols=232  Identities=16%  Similarity=0.219  Sum_probs=183.9

Q ss_pred             eeeecccccceeEEEEccCC-CeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEE
Q 036585           50 LKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLL  128 (304)
Q Consensus        50 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  128 (304)
                      +..+.+|..+|.|++=+|.. ..+++|+.   ||.|++||+.+.++...++.|.+.|..+++..  ..+++++.|.+|+.
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~---DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSC---DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ  133 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhcccc---CceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence            45678999999999999987 78899998   99999999999999999999999999999986  57899999999999


Q ss_pred             EeCCcceeeceEEEeccc-eeEecCCCeEEEecCCCeEEEEecC---------CCCCceEEEEecCCc-EEEEeeCCCeE
Q 036585          129 WDQRAEKCQGLLRVQGRP-AAAYDDQGLVFGYEKGPLDIFSVGG---------DISDANVVKFSNDGR-LMLLTTMEGHI  197 (304)
Q Consensus       129 wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~-~l~~~~~dg~i  197 (304)
                      |-++.. ...++...... -+.-......+......+.+|+...         ....+.++.|+|... .|+++..|+.|
T Consensus       134 wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI  212 (433)
T KOG0268|consen  134 WKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI  212 (433)
T ss_pred             eeccCC-cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence            997753 33333221111 1111122233334444566776542         335678899999764 56667799999


Q ss_pred             EEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-ceeeeeeccCCCCceEEeCCCCcEEE
Q 036585          198 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-KEVASWMSFDTEPPVIKWAPGSLMFV  276 (304)
Q Consensus       198 ~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~  276 (304)
                      .+||+++++++....    ....-+.++|+|.+--+.+|++|..++.||++.. +++....+|.+.|.++.|||.|+-++
T Consensus       213 vLyD~R~~~Pl~KVi----~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv  288 (433)
T KOG0268|consen  213 VLYDLRQASPLKKVI----LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV  288 (433)
T ss_pred             EEEecccCCccceee----eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence            999999999998887    4556677999997777889999999999999875 45777899999999999999999999


Q ss_pred             EecCc--eEEeccCCcc
Q 036585          277 TGSSE--LSFWIPDLSK  291 (304)
Q Consensus       277 s~~~d--~~iw~~~~~~  291 (304)
                      +||.|  |+||..+-..
T Consensus       289 sgsyDksIRIf~~~~~~  305 (433)
T KOG0268|consen  289 SGSYDKSIRIFPVNHGH  305 (433)
T ss_pred             cccccceEEEeecCCCc
Confidence            99999  9999876543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.3e-26  Score=185.85  Aligned_cols=237  Identities=19%  Similarity=0.306  Sum_probs=199.2

Q ss_pred             cceeeeecceeeEee--cccCcEEEEeeCCCeEEEEecCCccee--eeecccccceeE-EEEcc-CCCeEEEEecCCCCC
Q 036585            9 EDKVSLELSEEILQS--MEVGIYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDL-VCFTS-HPTTVIYSSKNGWDE   82 (304)
Q Consensus         9 ~~~~~~~~~~~~i~~--~~~~~~l~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~~~~d~   82 (304)
                      +....+++|..-++.  .-++-.++++|.||++++|+-...+.+  ..+.+|.+-+.+ +++.+ ++-.+++|+.   |.
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~---D~   81 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGM---DT   81 (745)
T ss_pred             eeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecc---cc
Confidence            345567777765544  334668999999999999997655443  446677777766 78875 4446888888   99


Q ss_pred             ceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585           83 SLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG  162 (304)
Q Consensus        83 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (304)
                      +|.+|...+..+...+++|+..|.++....++. +++|+.|.++++|-...-..  .                       
T Consensus        82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~--~-----------------------  135 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY--S-----------------------  135 (745)
T ss_pred             eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhc--c-----------------------
Confidence            999999999999999999999999999887776 99999999999997653321  1                       


Q ss_pred             CeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcE
Q 036585          163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV  242 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  242 (304)
                            +.+|+..|.+++.-|.+ .+++|+.|.+|++|.-  ++.++++.   +|...|..+++-+++ .+++++.||.|
T Consensus       136 ------l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~---gHtD~VRgL~vl~~~-~flScsNDg~I  202 (745)
T KOG0301|consen  136 ------LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS---GHTDCVRGLAVLDDS-HFLSCSNDGSI  202 (745)
T ss_pred             ------cCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc---cchhheeeeEEecCC-CeEeecCCceE
Confidence                  34799999999999988 7999999999999984  78888888   799999999998775 57789999999


Q ss_pred             EEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          243 HAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       243 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      +.|++ +++.+.++.+|..-+.++...+++..++++++|  ++||.-+
T Consensus       203 r~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  203 RLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             EEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            99998 889999999999999999988888999999999  9999876

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.1e-26  Score=188.35  Aligned_cols=231  Identities=16%  Similarity=0.227  Sum_probs=190.7

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ..+..+...+++|++++.+++|.+|...+++.-..+...+-++.+++|+.+|+.++.|+.   |-.|++.++.+......
T Consensus        57 ~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsd---D~~vK~~~~~D~s~~~~  133 (933)
T KOG1274|consen   57 ELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSD---DTAVKLLNLDDSSQEKV  133 (933)
T ss_pred             ceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecC---ceeEEEEeccccchhee
Confidence            334444556889999999999999999888766566666778999999999999999999   99999999999999999


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      +++|.++|.++.|+|++++|++.+-||.|++||+.++.....+..-....-.                     .....+.
T Consensus       134 lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~---------------------~~s~i~~  192 (933)
T KOG1274|consen  134 LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF---------------------ILSRICT  192 (933)
T ss_pred             ecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc---------------------cccceee
Confidence            9999999999999999999999999999999999988776665421111000                     0134567


Q ss_pred             EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee
Q 036585          178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM  257 (304)
Q Consensus       178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  257 (304)
                      .++|+|+|..|++.+.|+.|++|+..+++....+.... +...+..++|+|+|+|||+++.||.|.|||.++-+.    .
T Consensus       193 ~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~  267 (933)
T KOG1274|consen  193 RLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----H  267 (933)
T ss_pred             eeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----c
Confidence            89999998889999999999999999999888887543 334489999999999999999999999999987222    2


Q ss_pred             ccCCCCceEEeCCCCcEEEE
Q 036585          258 SFDTEPPVIKWAPGSLMFVT  277 (304)
Q Consensus       258 ~~~~~i~~~~~~~~~~~l~s  277 (304)
                      .....|.+++|.|+...+-.
T Consensus       268 ~~~~~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  268 EFKRAVCCEAWKPNANAITL  287 (933)
T ss_pred             cccceeEEEecCCCCCeeEE
Confidence            34567999999998765543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2.7e-26  Score=185.07  Aligned_cols=282  Identities=15%  Similarity=0.176  Sum_probs=204.1

Q ss_pred             ceeeEeecccCcEEEEee--CCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           17 SEEILQSMEVGIYLVTAS--DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      .-..++++++|+|+|+|-  ....++||++.....+..+..|+..|.|++|+|.++++++.+..- |-.|.+||.+.+..
T Consensus        80 ~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQH-DMIVnv~dWr~N~~  158 (1080)
T KOG1408|consen   80 PLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQH-DMIVNVNDWRVNSS  158 (1080)
T ss_pred             ceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeecccc-ceEEEhhhhhhccc
Confidence            345688999999999996  566799999999999999999999999999999999999887643 88899998876554


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece---------------------------------EE
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL---------------------------------LR  141 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------------------~~  141 (304)
                      ...-+ -...|..++|+.++.|+++.+. ..|++|.++.++....                                 +.
T Consensus       159 ~asnk-iss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfa  236 (1080)
T KOG1408|consen  159 GASNK-ISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFA  236 (1080)
T ss_pred             ccccc-cceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEE
Confidence            44333 4568999999999999999875 7899998875541110                                 00


Q ss_pred             Ee-----------------------ccc----------------------------------------------------
Q 036585          142 VQ-----------------------GRP----------------------------------------------------  146 (304)
Q Consensus       142 ~~-----------------------~~~----------------------------------------------------  146 (304)
                      ..                       ...                                                    
T Consensus       237 it~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~  316 (1080)
T KOG1408|consen  237 ITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKN  316 (1080)
T ss_pred             EecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccc
Confidence            00                       000                                                    


Q ss_pred             ------------eeEecCCC--eEEEecCCCeEEEEecC------------CCCCceEEEEec-----------CCcEEE
Q 036585          147 ------------AAAYDDQG--LVFGYEKGPLDIFSVGG------------DISDANVVKFSN-----------DGRLML  189 (304)
Q Consensus       147 ------------~~~~~~~~--~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~-----------~~~~l~  189 (304)
                                  ...+++..  ....|.+..+.+|++..            |...|..+.--|           -...|+
T Consensus       317 s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~  396 (1080)
T KOG1408|consen  317 SESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFT  396 (1080)
T ss_pred             cccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcccee
Confidence                        01111111  12267777888887764            333333333222           012488


Q ss_pred             EeeCCCeEEEEEcCCCceeEEEEe----------------------------------CCCCCCcceEEEEcCCCcEEEE
Q 036585          190 LTTMEGHIHVLDSFRGTLLSTYNV----------------------------------KPVSRNSTLEASFSPEGMFVIS  235 (304)
Q Consensus       190 ~~~~dg~i~~~d~~~~~~~~~~~~----------------------------------~~~~~~~i~~~~~s~~~~~l~~  235 (304)
                      +++.|++|++||+..+..-..+..                                  .-.....+.+++.||+|++||+
T Consensus       397 TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAs  476 (1080)
T KOG1408|consen  397 TCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLAS  476 (1080)
T ss_pred             EecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecc
Confidence            999999999999875322111100                                  0012446889999999999999


Q ss_pred             ecCCCcEEEEecCCCceeeeeeccCCCCceEEeCC---CCcEEEEecCc--eEEeccCC--ccccccccCCCC
Q 036585          236 GSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAP---GSLMFVTGSSE--LSFWIPDL--SKLGAYVGRNRG  301 (304)
Q Consensus       236 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~~~d--~~iw~~~~--~~~~~~~~~~~g  301 (304)
                      |..-|.++||++.+.+....+..|...|.|+.|+.   ..++||+++.|  |.|||...  ..++++.+|...
T Consensus       477 GDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss  549 (1080)
T KOG1408|consen  477 GDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS  549 (1080)
T ss_pred             cCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence            99999999999999998889999999999999986   35799999999  88998743  345666665543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.95  E-value=3.7e-26  Score=182.17  Aligned_cols=116  Identities=15%  Similarity=0.240  Sum_probs=99.3

Q ss_pred             CCceEEEEec-CCcEEEEeeCCCeEEEEEcCCC-------ceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEE
Q 036585          174 SDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRG-------TLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHA  244 (304)
Q Consensus       174 ~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~-------~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v  244 (304)
                      ..|+.+.|+| |...|++++.||.|++|.+..+       ++...+.   .|...|+++.|+| ..+.|++++.|.+|++
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt---~h~eKI~slRfHPLAadvLa~asyd~Ti~l  704 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT---IHGEKITSLRFHPLAADVLAVASYDSTIEL  704 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee---cccceEEEEEecchhhhHhhhhhccceeee
Confidence            4577888888 6678999999999999998654       3334445   6889999999999 5568999999999999


Q ss_pred             EecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585          245 WSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~  292 (304)
                      ||+++++....+.+|.+.|.+++|||+|+.+|+.+.|  +++|....+..
T Consensus       705 WDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  705 WDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             eehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence            9999999999999999999999999999999999999  77776655443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.9e-26  Score=173.18  Aligned_cols=228  Identities=17%  Similarity=0.195  Sum_probs=174.8

Q ss_pred             CcEEEEeeCCCeEEEEecCCc---cee------------------eeecccccceeEEEEccCCC-eEEEEecCCCCCce
Q 036585           27 GIYLVTASDDESIRLYDVTAA---TCL------------------KTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESL   84 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~---~~~------------------~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i   84 (304)
                      |+|+|.|+.|..|.|||+.=.   .+.                  ..-.+|+..|..++|+..-+ .|++|+.   |.+|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsa---D~TV  268 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSA---DKTV  268 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCC---CceE
Confidence            789999999999999997511   000                  11236888999999988655 5666666   9999


Q ss_pred             EEEEccCceeeeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeec-eEEEeccceeEecCCCeEEEecCC
Q 036585           85 RLLSLHDNKYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQGRPAAAYDDQGLVFGYEKG  162 (304)
Q Consensus        85 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  162 (304)
                      ++||+.++++..++..|.+.|.++.|+| ....|++|+.|+++.+.|.|...... ..+                     
T Consensus       269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk---------------------  327 (463)
T KOG0270|consen  269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK---------------------  327 (463)
T ss_pred             EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE---------------------
Confidence            9999999999999999999999999999 56689999999999999998532211 111                     


Q ss_pred             CeEEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCC-CcEEEEecCC
Q 036585          163 PLDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGD  239 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d  239 (304)
                               -.+.|..++|.|.. ..++++..||+++-+|+|+. +++.+++   .|..+|.++++++. ..++++++.|
T Consensus       328 ---------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~---AHd~~ISgl~~n~~~p~~l~t~s~d  395 (463)
T KOG0270|consen  328 ---------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK---AHDDEISGLSVNIQTPGLLSTASTD  395 (463)
T ss_pred             ---------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE---eccCCcceEEecCCCCcceeecccc
Confidence                     12578889998864 56778889999999999875 8888888   79999999999985 4578899999


Q ss_pred             CcEEEEecCCCce--eeeeeccCCCCceEEeCCCCc-EEEEecCc--eEEeccCCc
Q 036585          240 GSVHAWSVRSGKE--VASWMSFDTEPPVIKWAPGSL-MFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       240 g~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d--~~iw~~~~~  290 (304)
                      +.|++|++....+  +..-..--+...|.++.|+-. +++.|+..  ++||++-..
T Consensus       396 ~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  396 KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            9999999865443  222111223467777888764 45555555  899998543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=2.7e-26  Score=175.41  Aligned_cols=207  Identities=17%  Similarity=0.281  Sum_probs=163.3

Q ss_pred             ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce----------eeeecccccccEEEEEEcCCC-CEEEEcccC
Q 036585           55 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----------YSRYFKGHHDRVVLLSLCSSK-DCFISGSLD  123 (304)
Q Consensus        55 ~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  123 (304)
                      .|.+.|+.+...|+...++++...  .+.+.|||...-.          +-..+.+|.+.-+++.|++.. ..|++++.|
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~--~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTS--SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCC--CCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            478889999999987776665432  8999999986532          122677899888899999843 489999999


Q ss_pred             CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC-CcEEEEeeCCCeEEEEEc
Q 036585          124 RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDS  202 (304)
Q Consensus       124 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~  202 (304)
                      ++|++||+..........                      .....+.+|...|..++|++- ..+|++++.|+.+.|||+
T Consensus       200 ~~i~lwdi~~~~~~~~~~----------------------~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~  257 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVV----------------------DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDT  257 (422)
T ss_pred             CcEEEEeccccccCCccc----------------------cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEc
Confidence            999999997654421100                      011223478899999999994 567888999999999999


Q ss_pred             CC--CceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEecCCC-ceeeeeeccCCCCceEEeCCCC-cEEEE
Q 036585          203 FR--GTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWSVRSG-KEVASWMSFDTEPPVIKWAPGS-LMFVT  277 (304)
Q Consensus       203 ~~--~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~s  277 (304)
                      |+  .+......   .|.+.+.+++|+| ++..||+|+.|++|.+||+++. +++..+.+|...|.++.|+|.. ..||+
T Consensus       258 R~~~~~~~~~~~---ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLAS  334 (422)
T KOG0264|consen  258 RSNTSKPSHSVK---AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLAS  334 (422)
T ss_pred             CCCCCCCccccc---ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEe
Confidence            95  33444444   7999999999999 6677899999999999999985 4588889999999999999965 67888


Q ss_pred             ecCc--eEEeccC
Q 036585          278 GSSE--LSFWIPD  288 (304)
Q Consensus       278 ~~~d--~~iw~~~  288 (304)
                      ++.|  +.+||+.
T Consensus       335 Sg~D~rl~vWDls  347 (422)
T KOG0264|consen  335 SGTDRRLNVWDLS  347 (422)
T ss_pred             cccCCcEEEEecc
Confidence            8888  8888875

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=5.7e-24  Score=168.30  Aligned_cols=243  Identities=14%  Similarity=0.176  Sum_probs=182.4

Q ss_pred             eeEeecccCcEE-EEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           19 EILQSMEVGIYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        19 ~~i~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ..+.++++|+.+ ++++.++.|++||..+++.+..+..+. .+..++|+|+++.+++++..  ++.+++||+.+.+.+..
T Consensus        34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~--~~~l~~~d~~~~~~~~~  110 (300)
T TIGR03866        34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANED--DNLVTVIDIETRKVLAE  110 (300)
T ss_pred             CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCC--CCeEEEEECCCCeEEeE
Confidence            447788999876 566788999999999988887776554 35678999999988766532  88999999998877776


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCC-eEEEEeCCcceeeceEEEe-ccceeEecCCCeEE--Ee-cCCCeEEEEecCC
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGLVF--GY-EKGPLDIFSVGGD  172 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~  172 (304)
                      +. +...+.+++|+|++++++++..++ .+.+||.++++........ ....+.+++++..+  .. .++.+.+|++...
T Consensus       111 ~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~  189 (300)
T TIGR03866       111 IP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR  189 (300)
T ss_pred             ee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence            65 234568899999999999888765 5677898877665443322 23346677777533  22 3567888876532


Q ss_pred             C----------------CCceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEE
Q 036585          173 I----------------SDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  235 (304)
Q Consensus       173 ~----------------~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  235 (304)
                      .                .....++|+|++++++++ ..++.+.+||+++++....+.    +...+.+++|+|+|++|++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~  265 (300)
T TIGR03866       190 KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL----VGQRVWQLAFTPDEKYLLT  265 (300)
T ss_pred             eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE----eCCCcceEEECCCCCEEEE
Confidence            1                012458899999986554 456789999999888776554    3457889999999999988


Q ss_pred             e-cCCCcEEEEecCCCceeeeeeccCCCCceEEeCC
Q 036585          236 G-SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAP  270 (304)
Q Consensus       236 ~-~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~  270 (304)
                      + ..++.|++||+++++++..+... ...+.++++|
T Consensus       266 ~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       266 TNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            6 46899999999999999988754 5669998876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=9.7e-27  Score=170.92  Aligned_cols=247  Identities=15%  Similarity=0.243  Sum_probs=193.5

Q ss_pred             EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEE
Q 036585           29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLL  108 (304)
Q Consensus        29 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  108 (304)
                      .|++.-.++++.      .++++.+.+|+.+|..++.....+.+.+++.   |.+.+||.+++++++..+.+|.+.|.++
T Consensus       126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASA---DhTA~iWs~Esg~CL~~Y~GH~GSVNsi  196 (481)
T KOG0300|consen  126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASA---DHTARIWSLESGACLATYTGHTGSVNSI  196 (481)
T ss_pred             hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeeccc---ccceeEEeeccccceeeecccccceeeE
Confidence            344444555422      3456778899999999999888888888888   9999999999999999999999999999


Q ss_pred             EEcCCCCEEEEcccCCeEEEEeCC----cceeeceEEEecccee-EecCCCeEE----Eec--CCCeEEEEecCCCCCce
Q 036585          109 SLCSSKDCFISGSLDRTVLLWDQR----AEKCQGLLRVQGRPAA-AYDDQGLVF----GYE--KGPLDIFSVGGDISDAN  177 (304)
Q Consensus       109 ~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~--~~~~~~~~~~~~~~~v~  177 (304)
                      +|++.+.++++++.|++..||...    ..+....-........ .-+++..-.    ..+  .-.+.+..+.+|...|.
T Consensus       197 kfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~  276 (481)
T KOG0300|consen  197 KFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS  276 (481)
T ss_pred             EeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE
Confidence            999999999999999999999732    1111110000000000 001111111    111  12345667789999999


Q ss_pred             EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-ceeeee
Q 036585          178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-KEVASW  256 (304)
Q Consensus       178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~  256 (304)
                      +..|-..|+.+++++.|.+..+||+++++.+..+.   +|....+.++-+|..+++++.+.|.+.++||++.. ..+..|
T Consensus       277 a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt---GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF  353 (481)
T KOG0300|consen  277 ACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT---GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF  353 (481)
T ss_pred             ehhhhcCcceeeeeeccccceeeeeccCceecccc---CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee
Confidence            99999999999999999999999999999999998   89999999999999999999999999999999853 347788


Q ss_pred             eccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          257 MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       257 ~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      ++|...|+++.|.-+. .+++|++|  +++|++.
T Consensus       354 QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLr  386 (481)
T KOG0300|consen  354 QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLR  386 (481)
T ss_pred             cccccceeEEEEecCC-ceeecCCCceEEEeeec
Confidence            9999999999998775 56788888  9999984

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-25  Score=172.27  Aligned_cols=236  Identities=14%  Similarity=0.202  Sum_probs=196.6

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecC--CcceeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEccCce
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNK   93 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~~   93 (304)
                      ....+.|+|....|++++.|+++++|.+.  ....++.+.....+|.+.+|.|+|. .+++++.   ...++.||+.+.+
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r---rky~ysyDle~ak  291 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR---RKYLYSYDLETAK  291 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc---ceEEEEeeccccc
Confidence            34568899999999999999999999876  3456777777788999999999999 7777777   8899999999876


Q ss_pred             ee--eeccccc-ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           94 YS--RYFKGHH-DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        94 ~~--~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      ..  ....++. ..+.....+|++++++..+..|.|.+....+++.+..++..                           
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie---------------------------  344 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE---------------------------  344 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec---------------------------
Confidence            43  3333443 35778889999999999999999999999998888887754                           


Q ss_pred             CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC-
Q 036585          171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS-  249 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~-  249 (304)
                         +.|..++|+.+++.|++++.+|.|++||+++..++.++...  ..-.-+.+|.|+++.|||+|+..|.|.|||.++ 
T Consensus       345 ---G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~--G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~  419 (514)
T KOG2055|consen  345 ---GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD--GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC  419 (514)
T ss_pred             ---cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec--CccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence               56788999999999999999999999999999999988842  122345678889999999999999999999753 


Q ss_pred             -----CceeeeeeccCCCCceEEeCCCCcEEEEecCc----eEEecc
Q 036585          250 -----GKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE----LSFWIP  287 (304)
Q Consensus       250 -----~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----~~iw~~  287 (304)
                           .+++..+..-...|+++.|+||.+.||.+|.-    +++-.+
T Consensus       420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv  466 (514)
T KOG2055|consen  420 FASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV  466 (514)
T ss_pred             hccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec
Confidence                 46677777778899999999999999988865    665544

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.7e-25  Score=162.89  Aligned_cols=240  Identities=16%  Similarity=0.202  Sum_probs=150.5

Q ss_pred             ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC-cee-eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC
Q 036585           55 SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKY-SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR  132 (304)
Q Consensus        55 ~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  132 (304)
                      ...+.|.+++|||....++++++  ||++||+|+++. +.. .+....|.++|.+++|+.+|..+++|+.|+.+++||+.
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~S--WD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGS--WDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             CcccchheeEeccccCceEEecc--cCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence            35678999999997776665554  699999999987 332 24556799999999999999999999999999999999


Q ss_pred             cceeeceEEEeccc-eeEecCCC----eEEEecCCCeEEEEecCCCCCceEEEE-------ecCCcEEEEeeCCCeEEEE
Q 036585          133 AEKCQGLLRVQGRP-AAAYDDQG----LVFGYEKGPLDIFSVGGDISDANVVKF-------SNDGRLMLLTTMEGHIHVL  200 (304)
Q Consensus       133 ~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~dg~i~~~  200 (304)
                      +++....-...... .+.+-+..    ++.+.-++.++.|+.+.. .++..+.+       +--...++++..+..|.+|
T Consensus       103 S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vy  181 (347)
T KOG0647|consen  103 SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQLPERVYAADVLYPMAVVATAERHIAVY  181 (347)
T ss_pred             CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-CeeeeeeccceeeehhccCceeEEEecCCcEEEE
Confidence            99654433211111 11111111    123333444444443321 11111111       1112233444444444444


Q ss_pred             EcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC--ceeeeeeccCC---------CCceEEeC
Q 036585          201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG--KEVASWMSFDT---------EPPVIKWA  269 (304)
Q Consensus       201 d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~---------~i~~~~~~  269 (304)
                      +++.+......... ..+-.+.+++..+|....+.|+-+|.+.|..+..+  +.-..++.|..         .|++|+|+
T Consensus       182 nL~n~~te~k~~~S-pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh  260 (347)
T KOG0647|consen  182 NLENPPTEFKRIES-PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH  260 (347)
T ss_pred             EcCCCcchhhhhcC-cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence            44333222111111 13445777888888777799999999999988776  33344555652         47889999


Q ss_pred             CCCcEEEEecCc--eEEeccCCc-cccccccC
Q 036585          270 PGSLMFVTGSSE--LSFWIPDLS-KLGAYVGR  298 (304)
Q Consensus       270 ~~~~~l~s~~~d--~~iw~~~~~-~~~~~~~~  298 (304)
                      |....|+|++.|  ..+||-+.+ +|+....+
T Consensus       261 P~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~  292 (347)
T KOG0647|consen  261 PVHGTLVTAGSDGTFSFWDKDARTKLKTSETH  292 (347)
T ss_pred             cccceEEEecCCceEEEecchhhhhhhccCcC
Confidence            999999999999  888988653 45554443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=9.9e-25  Score=169.32  Aligned_cols=227  Identities=21%  Similarity=0.334  Sum_probs=182.3

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee-----
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-----   94 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~-----   94 (304)
                      .+.|.++|+ ++||..+|.|.||+..+.+..+....|.+.|.+++...+|..|- |+.   |..|..||-.-.+.     
T Consensus       251 ~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgK---DRki~~Wd~~y~k~r~~el  325 (626)
T KOG2106|consen  251 CVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGK---DRKIILWDDNYRKLRETEL  325 (626)
T ss_pred             EEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCc---cceEEeccccccccccccC
Confidence            466667665 67899999999999988888777779999999999999997666 777   99999998321100     


Q ss_pred             ------e-----------------------------eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece
Q 036585           95 ------S-----------------------------RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL  139 (304)
Q Consensus        95 ------~-----------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  139 (304)
                            +                             ....+|.+..+.++.+|+.+++++++.|+.+++|+  ..+.+..
T Consensus       326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt  403 (626)
T KOG2106|consen  326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT  403 (626)
T ss_pred             chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE
Confidence                  0                             11246888889999999999999999999999999  4444433


Q ss_pred             EEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCC
Q 036585          140 LRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  219 (304)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  219 (304)
                      ..                              -..++.++.|+|.| .+++|+..|...+.|.++...+....    ...
T Consensus       404 ~~------------------------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~----d~~  448 (626)
T KOG2106|consen  404 KI------------------------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT----DNE  448 (626)
T ss_pred             EE------------------------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe----cCC
Confidence            32                              22567889999999 89999999999999999865555554    378


Q ss_pred             cceEEEEcCCCcEEEEecCCCcEEEEecCCC-ceeeee-eccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          220 STLEASFSPEGMFVISGSGDGSVHAWSVRSG-KEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       220 ~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      ++++++|+|+|.+||.|+.|+.|++|.+... ...... +.+..+|+.+.|++|+++|.+-+.|  +..|...
T Consensus       449 ~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  449 QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence            9999999999999999999999999998654 333333 3345899999999999999999998  8888544

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=5.4e-26  Score=170.14  Aligned_cols=207  Identities=16%  Similarity=0.303  Sum_probs=160.4

Q ss_pred             ccccceeEEEEccCCC--eEEEEecCCCCCceEEEEccC----------------ceeeeecccccccEEEEEEcCC-CC
Q 036585           55 SKKYGVDLVCFTSHPT--TVIYSSKNGWDESLRLLSLHD----------------NKYSRYFKGHHDRVVLLSLCSS-KD  115 (304)
Q Consensus        55 ~~~~~v~~~~~~~~~~--~l~~~~~~~~d~~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~-~~  115 (304)
                      .|.+.++.+.-++-++  +.++-+.   .|.|+||++..                .+++.++.+|...=++++|+|- ..
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse---~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g  225 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSE---NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG  225 (440)
T ss_pred             ccccccceeeecccCCcceeeeecc---cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence            4666777777776554  3444444   99999999853                2467788899999999999992 23


Q ss_pred             EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEEEeeCC
Q 036585          116 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLMLLTTME  194 (304)
Q Consensus       116 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  194 (304)
                      .|++|.--+.|++|...++.-..    ...+                      +.+|...|..++|||.. ..|++|+.|
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~v----d~~P----------------------f~gH~~SVEDLqWSptE~~vfaScS~D  279 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWKV----DQRP----------------------FTGHTKSVEDLQWSPTEDGVFASCSCD  279 (440)
T ss_pred             ccccCccccceEeeeeccCceee----cCcc----------------------ccccccchhhhccCCccCceEEeeecC
Confidence            58888888899999987754321    1111                      12588899999999964 578889999


Q ss_pred             CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC---CceeeeeeccCCCCceEEeCCC
Q 036585          195 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS---GKEVASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       195 g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~i~~~~~~~~  271 (304)
                      |+|+|||++.+.....+.. ..|...|+.+.|+....+||+|+.||+++|||+++   ++++..++.|..+|++|.|+|.
T Consensus       280 gsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~  358 (440)
T KOG0302|consen  280 GSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH  358 (440)
T ss_pred             ceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence            9999999999844333322 26889999999999888999999999999999986   5678899999999999999995


Q ss_pred             C-cEEEEecCc--eEEeccCCcc
Q 036585          272 S-LMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       272 ~-~~l~s~~~d--~~iw~~~~~~  291 (304)
                      . ..|++++.|  +.|||+..++
T Consensus       359 e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  359 EDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             cCceEEeccCCCcEEEEEeeccC
Confidence            3 556666666  9999997654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=2.4e-26  Score=178.65  Aligned_cols=219  Identities=13%  Similarity=0.167  Sum_probs=167.0

Q ss_pred             eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce----eeeecc-cccccEEEEEEcCCCCEEEEcccCCe
Q 036585           51 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRT  125 (304)
Q Consensus        51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~  125 (304)
                      ..+++|+..|.++++.|.|..+++|+.   |..|++||+....    ..+.+. .....|.++.|++.+..|++.+....
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~---Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSL---DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccc---cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            457788899999999999999999998   9999999997532    222222 23457999999999999999888899


Q ss_pred             EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCC
Q 036585          126 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~  204 (304)
                      .+++|-.........+. ...                -..+....+|...+++.+|+|.. ..|++++.||++++||+..
T Consensus       238 akl~DRdG~~~~e~~KG-DQY----------------I~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~  300 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKG-DQY----------------IRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN  300 (641)
T ss_pred             eeEEccCCceeeeeecc-chh----------------hhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence            99999554433322221 110                11233445788999999999975 5789999999999999976


Q ss_pred             Cce-eEEEE--eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce---eeeeeccCC--CCceEEeCCCCcEEE
Q 036585          205 GTL-LSTYN--VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE---VASWMSFDT--EPPVIKWAPGSLMFV  276 (304)
Q Consensus       205 ~~~-~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~l~  276 (304)
                      .+. ...+.  ...+..-+++.++|+|||+++|+|+.||+|.+|+..+...   ...-..|..  .|+||.||+||++|+
T Consensus       301 ~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  301 TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL  380 (641)
T ss_pred             chhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence            432 33333  2223456889999999999999999999999999855322   222356776  899999999999999


Q ss_pred             EecCc--eEEeccCC
Q 036585          277 TGSSE--LSFWIPDL  289 (304)
Q Consensus       277 s~~~d--~~iw~~~~  289 (304)
                      +-+.|  +++|++..
T Consensus       381 SRg~D~tLKvWDLrq  395 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQ  395 (641)
T ss_pred             hccCCCceeeeeccc
Confidence            99988  99999864

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=7.9e-26  Score=164.33  Aligned_cols=201  Identities=15%  Similarity=0.270  Sum_probs=164.5

Q ss_pred             ecccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEccCcee----------e-----eecccccccEEEEEEcC-CCC
Q 036585           53 INSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKY----------S-----RYFKGHHDRVVLLSLCS-SKD  115 (304)
Q Consensus        53 ~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~~~----------~-----~~~~~~~~~v~~~~~~~-~~~  115 (304)
                      ...|.+.|+++...+ .++++++|+.   ||.|.+||++....          .     ..-.+|.-.|..+.|-| |..
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGga---dgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGA---DGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCC---CccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence            345888999999987 6789999998   99999999976421          1     11235778999999999 666


Q ss_pred             EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC---CcEEEEee
Q 036585          116 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND---GRLMLLTT  192 (304)
Q Consensus       116 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~  192 (304)
                      .|.+++.|.++++||..+.+....++.+                              +.|.+-++||-   .-++++|.
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~~F~me------------------------------~~VYshamSp~a~sHcLiA~gt  165 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAVDFKME------------------------------GKVYSHAMSPMAMSHCLIAAGT  165 (397)
T ss_pred             eeecccccceEEEeecccceeeEEeecC------------------------------ceeehhhcChhhhcceEEEEec
Confidence            8999999999999999998887777644                              34555666663   45788899


Q ss_pred             CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcE-EEEecCCCcEEEEecCCC-ceeee--------------e
Q 036585          193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF-VISGSGDGSVHAWSVRSG-KEVAS--------------W  256 (304)
Q Consensus       193 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~v~d~~~~-~~~~~--------------~  256 (304)
                      .+-.|++.|+.+|....++.   +|...|.++.|+|...+ |++|+.||.|++||++.. .+...              -
T Consensus       166 r~~~VrLCDi~SGs~sH~Ls---GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n  242 (397)
T KOG4283|consen  166 RDVQVRLCDIASGSFSHTLS---GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTN  242 (397)
T ss_pred             CCCcEEEEeccCCcceeeec---cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccc
Confidence            99999999999999999999   89999999999997766 788999999999999753 22222              2


Q ss_pred             eccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          257 MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       257 ~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      ..|.+.+++++|..++.++++.+.|  +++|+...
T Consensus       243 ~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  243 TAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             ccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence            4677889999999999999999988  99998754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=6.3e-25  Score=160.87  Aligned_cols=232  Identities=13%  Similarity=0.220  Sum_probs=186.1

Q ss_pred             EEEEeeCCCeEEEEecCC------------cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           29 YLVTASDDESIRLYDVTA------------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        29 ~l~~~~~d~~i~vw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      .|++|++...|.=+++.-            ..++..+..|.+++++++.  ++.++++|+.   |.+|+|||+.......
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGss---DetI~IYDm~k~~qlg   77 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSS---DETIHIYDMRKRKQLG   77 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCC---CCcEEEEeccchhhhc
Confidence            366777776666555431            1234567789999999999  7999999999   9999999999999999


Q ss_pred             ecccccccEEEEEEcCCCC--EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585           97 YFKGHHDRVVLLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS  174 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (304)
                      .+..|.+.|+++.|.++..  .|++|+.||.|.+|+...-.....++                             +|..
T Consensus        78 ~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-----------------------------~H~~  128 (362)
T KOG0294|consen   78 ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-----------------------------AHKG  128 (362)
T ss_pred             ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-----------------------------cccc
Confidence            9999999999999998665  89999999999999998877666665                             6778


Q ss_pred             CceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585          175 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA  254 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~  254 (304)
                      .|+.++.+|.|++.++.+.|+.+++||+-.|+.....+.    ....+.+.|+|.|.+++.+..++ |-+|.+.+.+...
T Consensus       129 ~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L----~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~  203 (362)
T KOG0294|consen  129 QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL----KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFR  203 (362)
T ss_pred             ccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc----CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhh
Confidence            899999999999999999999999999999988777763    33444599999999998887665 9999998877766


Q ss_pred             eeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC-ccccccccCCCC
Q 036585          255 SWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL-SKLGAYVGRNRG  301 (304)
Q Consensus       255 ~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~-~~~~~~~~~~~g  301 (304)
                      .+.. ...+.++.|- ++..|++|++|  +++||-+. ..+..+.+|+.-
T Consensus       204 ~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~R  251 (362)
T KOG0294|consen  204 EIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENR  251 (362)
T ss_pred             hhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhh
Confidence            6542 2557777775 45677777777  99999974 445566666643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.3e-26  Score=160.83  Aligned_cols=205  Identities=17%  Similarity=0.261  Sum_probs=167.3

Q ss_pred             cccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc---eeeeecccccccEEEEEEcC--CCCEEEEcccCCeEEE
Q 036585           54 NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN---KYSRYFKGHHDRVVLLSLCS--SKDCFISGSLDRTVLL  128 (304)
Q Consensus        54 ~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i  128 (304)
                      ..|.+.|..+...--|++|+++++   |++|+|+..+++   +.+.++.+|.+||..++|..  -|.+|++++.||.|.|
T Consensus         8 t~H~D~IHda~lDyygkrlATcsS---D~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi   84 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSS---DGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII   84 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecC---CccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence            358888988888889999999999   999999999865   46778999999999999975  7899999999999999


Q ss_pred             EeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC--CcEEEEeeCCCeEEEEEcCCCc
Q 036585          129 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRGT  206 (304)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~  206 (304)
                      |.-+.++-.+...                           ...|...|++++|.|.  |-.|++++.||.|.+.+.++..
T Consensus        85 Wke~~g~w~k~~e---------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g  137 (299)
T KOG1332|consen   85 WKEENGRWTKAYE---------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG  137 (299)
T ss_pred             EecCCCchhhhhh---------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC
Confidence            9988774433322                           1257889999999886  5688999999999999887641


Q ss_pred             eeEEEEeCCCCCCcceEEEEcCC---C-----------cEEEEecCCCcEEEEecCCCc--eeeeeeccCCCCceEEeCC
Q 036585          207 LLSTYNVKPVSRNSTLEASFSPE---G-----------MFVISGSGDGSVHAWSVRSGK--EVASWMSFDTEPPVIKWAP  270 (304)
Q Consensus       207 ~~~~~~~~~~~~~~i~~~~~s~~---~-----------~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~  270 (304)
                      .-.+-.....|.-.+++++|.|.   |           +.|++|+.|+.|+||+..+++  .-..+.+|...|+.++|.|
T Consensus       138 ~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP  217 (299)
T KOG1332|consen  138 GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAP  217 (299)
T ss_pred             CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcc
Confidence            11111122268889999999995   4           569999999999999998753  3445889999999999999


Q ss_pred             CC----cEEEEecCc--eEEeccC
Q 036585          271 GS----LMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       271 ~~----~~l~s~~~d--~~iw~~~  288 (304)
                      .-    .+||+++.|  +.||..+
T Consensus       218 ~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  218 SVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             ccCCCceeeEEecCCCcEEEEEec
Confidence            64    689999999  8888765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4e-24  Score=171.22  Aligned_cols=234  Identities=13%  Similarity=0.151  Sum_probs=190.0

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcc-eeeeeccc-ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAAT-CLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      +++++...+.||.+-.||.|.+|++..+= +...+.++ ...|.+++|++ +..|++.+.   +|.|.-||+.++++...
T Consensus        30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~---sg~i~EwDl~~lk~~~~  105 (691)
T KOG2048|consen   30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGL---SGSITEWDLHTLKQKYN  105 (691)
T ss_pred             EEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecC---CceEEEEecccCceeEE
Confidence            35566668889999999999999998643 33445554 46799999995 456666666   99999999999999999


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      +....+.|++++.+|.+..++.|+.||.+..++...++........                           ...+.+.
T Consensus       106 ~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~---------------------------rq~sRvL  158 (691)
T KOG2048|consen  106 IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM---------------------------RQKSRVL  158 (691)
T ss_pred             ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc---------------------------cccceEE
Confidence            9988899999999999999999999998888887766654433221                           2347889


Q ss_pred             EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC-----CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585          178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-----PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  252 (304)
                      +++|+|++..++.|+.||.|++||..++.........     .....-|.++.|-.++ .|++|..-|+|.+||...+.+
T Consensus       159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTL  237 (691)
T KOG2048|consen  159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTL  237 (691)
T ss_pred             EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcch
Confidence            9999999999999999999999999998877733211     1123346677766554 789999999999999999999


Q ss_pred             eeeeeccCCCCceEEeCCCCcEEEEecCceEEe
Q 036585          253 VASWMSFDTEPPVIKWAPGSLMFVTGSSELSFW  285 (304)
Q Consensus       253 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw  285 (304)
                      ++....|.+.|.+++..+++.++++++.|-++.
T Consensus       238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii  270 (691)
T KOG2048|consen  238 IQSHSCHDADVLALAVADNEDRVFSAGVDPKII  270 (691)
T ss_pred             hhhhhhhhcceeEEEEcCCCCeEEEccCCCceE
Confidence            999999999999999999999999999994333

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.94  E-value=4.3e-25  Score=162.38  Aligned_cols=229  Identities=15%  Similarity=0.258  Sum_probs=179.5

Q ss_pred             ccCcEEEEeeCCCeEEEEecCCcceeeeecc--cc---cceeEEEEccCCCeEEEEecCCCCCceEEEEc-cCcee--ee
Q 036585           25 EVGIYLVTASDDESIRLYDVTAATCLKTINS--KK---YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL-HDNKY--SR   96 (304)
Q Consensus        25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~-~~~~~--~~   96 (304)
                      |+.+++|+.+.+.-|++||.-+|+....+..  |.   ....+++|+|||.+|++|-    ..+|+++|+ +.|..  +.
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy----krcirvFdt~RpGr~c~vy  196 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY----KRCIRVFDTSRPGRDCPVY  196 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc----cceEEEeeccCCCCCCcch
Confidence            4578999999999999999999998887764  33   3467899999999999997    889999999 45532  11


Q ss_pred             e-c----ccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           97 Y-F----KGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        97 ~-~----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      . +    .+..+-+.+++|+| +...++.++....+-||.-....+...+                             .
T Consensus       197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-----------------------------g  247 (406)
T KOG2919|consen  197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-----------------------------G  247 (406)
T ss_pred             hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee-----------------------------c
Confidence            1 1    12366789999999 5558999999888888876666554443                             3


Q ss_pred             CCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          171 GDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                      +|.+.|+.++|.++|+.|++|+. +-.|..||++.. .++..+..+....+.-.-....|++++|++|+.||.|++||++
T Consensus       248 gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk  327 (406)
T KOG2919|consen  248 GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK  327 (406)
T ss_pred             ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence            78899999999999999999876 678999999864 4444554333322333336677899999999999999999999


Q ss_pred             C-CceeeeeeccCCCCceEEeCCCCcEEEEecCceEEecc
Q 036585          249 S-GKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIP  287 (304)
Q Consensus       249 ~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~  287 (304)
                      + +..+..+..+...++.++++|--.++|+++.. +++..
T Consensus       328 ~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq-r~f~~  366 (406)
T KOG2919|consen  328 DLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ-RIFKY  366 (406)
T ss_pred             CCCCcccccccccccccceecCcccceeeeccCc-eeecC
Confidence            8 77788888899999999999998888888776 44433

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.94  E-value=2.7e-25  Score=172.20  Aligned_cols=218  Identities=16%  Similarity=0.226  Sum_probs=185.8

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      ++.+.....|+++|+..+.|+|||++...+.+.+++|...|+++.++....+|++++.   .|.|.|..+.++.....|.
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~---gGdiiih~~~t~~~tt~f~  160 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD---GGDIIIHGTKTKQKTTTFT  160 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc---CCcEEEEecccCcccccee
Confidence            3555566789999999999999999977778889999999999999999999999998   8999999999988777777


Q ss_pred             cc-cccEEEEEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585          100 GH-HDRVVLLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus       100 ~~-~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      .. ...|.-+.|+|..+ +|.+++.+|.|.+||+....+...+.                            +.|..+..
T Consensus       161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~----------------------------~~HsAP~~  212 (673)
T KOG4378|consen  161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS----------------------------EAHSAPCR  212 (673)
T ss_pred             cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh----------------------------hhccCCcC
Confidence            44 34566899999665 56778999999999998766554332                            24778889


Q ss_pred             EEEEecCC-cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-ceeee
Q 036585          178 VVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-KEVAS  255 (304)
Q Consensus       178 ~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~  255 (304)
                      .++|+|.. .+|++.+.|.+|.+||.+..+....+.    ...+...++|+++|.+|++|...|.|..||++.. .++..
T Consensus       213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v  288 (673)
T KOG4378|consen  213 GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV  288 (673)
T ss_pred             cceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence            99999965 567778999999999999888777776    6678999999999999999999999999999864 56888


Q ss_pred             eeccCCCCceEEeCCCC
Q 036585          256 WMSFDTEPPVIKWAPGS  272 (304)
Q Consensus       256 ~~~~~~~i~~~~~~~~~  272 (304)
                      +..|...|++++|-|.-
T Consensus       289 ~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  289 RSAHDASVTRVAFQPSP  305 (673)
T ss_pred             eeecccceeEEEeeecc
Confidence            89999999999997764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.94  E-value=1.1e-25  Score=165.74  Aligned_cols=251  Identities=17%  Similarity=0.276  Sum_probs=186.7

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEccCceeeeecc---ccc
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKYSRYFK---GHH  102 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~~~~~~~~---~~~  102 (304)
                      ..++|.++.-|.|+|.|+.+++....+.+|...|+.+.+.|+.. ++++++.   |..|++|++++..++..+-   +|.
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk---D~svRlwnI~~~~Cv~VfGG~egHr  181 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK---DHSVRLWNIQTDVCVAVFGGVEGHR  181 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC---CceEEEEeccCCeEEEEeccccccc
Confidence            46899999999999999999999999999999999999999764 5666666   9999999999999988764   799


Q ss_pred             ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecC--CCeEEE-EecCCCCCceEE
Q 036585          103 DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEK--GPLDIF-SVGGDISDANVV  179 (304)
Q Consensus       103 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~v~~~  179 (304)
                      +.|.++.|++++.++++++.|..+++|++...+....++.    ...+.+++....+..  ..+..| .-..|...|.|+
T Consensus       182 deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~----s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv  257 (385)
T KOG1034|consen  182 DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL----SITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV  257 (385)
T ss_pred             CcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh----hcccCCCCccCcCCccccccccccccccccchHHHH
Confidence            9999999999999999999999999999986543332221    122222222111111  122222 223577888888


Q ss_pred             EEecCCcEEEEeeCCCeEEEEEc-CCCce-------------eEEEEeCCCCCCcceE--EEEcCCCcEEEEecCCCcEE
Q 036585          180 KFSNDGRLMLLTTMEGHIHVLDS-FRGTL-------------LSTYNVKPVSRNSTLE--ASFSPEGMFVISGSGDGSVH  243 (304)
Q Consensus       180 ~~~~~~~~l~~~~~dg~i~~~d~-~~~~~-------------~~~~~~~~~~~~~i~~--~~~s~~~~~l~~~~~dg~i~  243 (304)
                      .|-  |.++++-+.++.|..|.. +-++.             +.++.   .....+.-  .+|+|-++.||.|...|.|+
T Consensus       258 rw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~---~~~c~iWfirf~~d~~~~~la~gnq~g~v~  332 (385)
T KOG1034|consen  258 RWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD---YPMCDIWFIRFAFDPWQKMLALGNQSGKVY  332 (385)
T ss_pred             HHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec---cCccceEEEEEeecHHHHHHhhccCCCcEE
Confidence            884  678999888999999986 21111             12222   22333333  45667788999999999999


Q ss_pred             EEecCCCcee--eeee--ccCCCCceEEeCCCCcEEEEecCceEEeccCC
Q 036585          244 AWSVRSGKEV--ASWM--SFDTEPPVIKWAPGSLMFVTGSSELSFWIPDL  289 (304)
Q Consensus       244 v~d~~~~~~~--~~~~--~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~  289 (304)
                      +||+++.++.  .++.  .....|...+|+.|+..|+..++|..||.|+.
T Consensus       333 vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  333 VWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             EEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            9999887663  2221  22457899999999999999999988887763

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.1e-24  Score=158.32  Aligned_cols=228  Identities=14%  Similarity=0.230  Sum_probs=172.9

Q ss_pred             eeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece
Q 036585           60 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL  139 (304)
Q Consensus        60 v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  139 (304)
                      ..|+.|++.|.+|++|+.   ||.|.|||+.+...-+.+.+|..+|++++|+++|+.|++++.|..|.+||+..+.+...
T Consensus        26 a~~~~Fs~~G~~lAvGc~---nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCA---NGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeecc---CCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence            789999999999999999   99999999999998889999999999999999999999999999999999999998888


Q ss_pred             EEEeccc-eeEecCCC-------------eEEEecCCCeEEEEecCC---CCCceEEEEecCCcEEEEeeCCCeEEEEEc
Q 036585          140 LRVQGRP-AAAYDDQG-------------LVFGYEKGPLDIFSVGGD---ISDANVVKFSNDGRLMLLTTMEGHIHVLDS  202 (304)
Q Consensus       140 ~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  202 (304)
                      ++...+. ...+.|..             .+..+++..-.+......   .....+..|.+.|+++++|...|.+.+||.
T Consensus       103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence            8765543 22333321             111222211111111111   112233468899999999999999999999


Q ss_pred             CCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-------ce--eeeeec--cCCCCceEEeCCC
Q 036585          203 FRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-------KE--VASWMS--FDTEPPVIKWAPG  271 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-------~~--~~~~~~--~~~~i~~~~~~~~  271 (304)
                      .+.+++..++..  ....|..+.|+..|++|+.-+.|..||.|+++.-       ++  ...+..  ....=.+++|+.+
T Consensus       183 ~t~e~vas~rit--s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d  260 (405)
T KOG1273|consen  183 ETLECVASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD  260 (405)
T ss_pred             chheeeeeeeec--hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence            999999888842  2378889999999999999999999999998631       11  112211  1123357889999


Q ss_pred             CcEEEEecCc---eEEeccCCccc
Q 036585          272 SLMFVTGSSE---LSFWIPDLSKL  292 (304)
Q Consensus       272 ~~~l~s~~~d---~~iw~~~~~~~  292 (304)
                      |.|++.++..   +.||.-....+
T Consensus       261 geYv~a~s~~aHaLYIWE~~~GsL  284 (405)
T KOG1273|consen  261 GEYVCAGSARAHALYIWEKSIGSL  284 (405)
T ss_pred             ccEEEeccccceeEEEEecCCcce
Confidence            9999998877   77887766554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=6.1e-23  Score=168.21  Aligned_cols=276  Identities=13%  Similarity=0.222  Sum_probs=209.3

Q ss_pred             eeecce-eeEeecccCcEEEEeeCCCeEEEEecCCc-cee----eeecccccceeEEEEccC--CCeEEEEecCCCCCce
Q 036585           13 SLELSE-EILQSMEVGIYLVTASDDESIRLYDVTAA-TCL----KTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDESL   84 (304)
Q Consensus        13 ~~~~~~-~~i~~~~~~~~l~~~~~d~~i~vw~~~~~-~~~----~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~d~~i   84 (304)
                      ....|. .+-...+.|.+++++..++.+.||+..+. +..    ..++.....|.++. +|.  =+.++.|+.   +|.+
T Consensus       109 ~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~---~G~l  184 (910)
T KOG1539|consen  109 TTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSS---QGRL  184 (910)
T ss_pred             EeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeec---CCcE
Confidence            334444 33344577999999999999999998874 221    11222222365554 443  356888888   9999


Q ss_pred             EEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecCCCeEE-----
Q 036585           85 RLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVF-----  157 (304)
Q Consensus        85 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----  157 (304)
                      ++|++++++.+.+++++...|+++.-+|-=..++.|..+|+|.+++++.++.+..++....  ..+++..+|..+     
T Consensus       185 ql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~  264 (910)
T KOG1539|consen  185 QLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR  264 (910)
T ss_pred             EEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc
Confidence            9999999999999999999999999999888999999999999999999998888876421  122332222111     


Q ss_pred             -----------------------------------------EecCCCeEEEEec-------------CC-----------
Q 036585          158 -----------------------------------------GYEKGPLDIFSVG-------------GD-----------  172 (304)
Q Consensus       158 -----------------------------------------~~~~~~~~~~~~~-------------~~-----------  172 (304)
                                                               ...++.+++|...             +|           
T Consensus       265 ~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~  344 (910)
T KOG1539|consen  265 SNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYG  344 (910)
T ss_pred             CCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeec
Confidence                                                     2222333333221             00           


Q ss_pred             --------------------------------------------------------------------------------
Q 036585          173 --------------------------------------------------------------------------------  172 (304)
Q Consensus       173 --------------------------------------------------------------------------------  172 (304)
                                                                                                      
T Consensus       345 ~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~  424 (910)
T KOG1539|consen  345 SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSA  424 (910)
T ss_pred             cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceE
Confidence                                                                                            


Q ss_pred             -----------------------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585          173 -----------------------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  229 (304)
Q Consensus       173 -----------------------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~  229 (304)
                                             ...+++++.++-|++.+.|+..|.|-+|++++|-...++...+.|..+|+.++...-
T Consensus       425 ~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~  504 (910)
T KOG1539|consen  425 YTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT  504 (910)
T ss_pred             EEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC
Confidence                                   134677888889999999999999999999999999888655579999999999998


Q ss_pred             CcEEEEecCCCcEEEEecCCCce-----------------------------------------eeeeeccCCCCceEEe
Q 036585          230 GMFVISGSGDGSVHAWSVRSGKE-----------------------------------------VASWMSFDTEPPVIKW  268 (304)
Q Consensus       230 ~~~l~~~~~dg~i~v~d~~~~~~-----------------------------------------~~~~~~~~~~i~~~~~  268 (304)
                      ++.+++++.+|.+++||.+...+                                         ++.+.+|...|++++|
T Consensus       505 n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~F  584 (910)
T KOG1539|consen  505 NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTF  584 (910)
T ss_pred             CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEe
Confidence            99999999999999999876441                                         2334589999999999


Q ss_pred             CCCCcEEEEecCc--eEEeccCCccc
Q 036585          269 APGSLMFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       269 ~~~~~~l~s~~~d--~~iw~~~~~~~  292 (304)
                      ||||++|++++.|  |++||+....+
T Consensus       585 S~DgrWlisasmD~tIr~wDlpt~~l  610 (910)
T KOG1539|consen  585 SPDGRWLISASMDSTIRTWDLPTGTL  610 (910)
T ss_pred             CCCCcEEEEeecCCcEEEEeccCcce
Confidence            9999999999999  99999876654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=1.3e-22  Score=157.72  Aligned_cols=254  Identities=16%  Similarity=0.228  Sum_probs=190.5

Q ss_pred             EeecccCc-EEEEeeCCCeEEEEecCCcceeee---eccc-ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           21 LQSMEVGI-YLVTASDDESIRLYDVTAATCLKT---INSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        21 i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~---~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      ..|.|.+. ++++.+ .+.+..|+.+++.+.++   ++.+ +..|.|++|.+++. +++|.+   +|.|.||+..+.+..
T Consensus       206 a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS---~G~i~Iw~~~~~~~~  280 (626)
T KOG2106|consen  206 ATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDS---GGNILIWSKGTNRIS  280 (626)
T ss_pred             EEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecC---CceEEEEeCCCceEE
Confidence            46777654 555555 57899999988766543   3332 36799999999885 667777   999999999888877


Q ss_pred             eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec---cc-eeEecCCCeEEEecCCCeEEE----
Q 036585           96 RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---RP-AAAYDDQGLVFGYEKGPLDIF----  167 (304)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~----  167 (304)
                      +....|.+.|.++....+|. |++|+.|+.|..|| ..-+..+..+.+.   .. .+.-...+.+++...+.+..-    
T Consensus       281 k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~  358 (626)
T KOG2106|consen  281 KQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN  358 (626)
T ss_pred             eEeeecCCceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence            77779999999999999985 55599999999999 3333333332221   11 112222224444443333222    


Q ss_pred             ----EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEE
Q 036585          168 ----SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVH  243 (304)
Q Consensus       168 ----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  243 (304)
                          ...+|......++.+|+...+++++.|+.+++|+  ..++..+..    ...+..++.|+|.| .+|.|...|...
T Consensus       359 ~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~----~~d~~~~~~fhpsg-~va~Gt~~G~w~  431 (626)
T KOG2106|consen  359 GFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI----IEDPAECADFHPSG-VVAVGTATGRWF  431 (626)
T ss_pred             CceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE----ecCceeEeeccCcc-eEEEeeccceEE
Confidence                2346777889999999999999999999999999  556666655    56788899999999 999999999999


Q ss_pred             EEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          244 AWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       244 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      +.|.++...+..-.. ..++++++|+|+|.+||.|+.|  +.||.++.
T Consensus       432 V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  432 VLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             EEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence            999988665554444 8899999999999999999999  77877654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=2.9e-24  Score=171.03  Aligned_cols=246  Identities=19%  Similarity=0.264  Sum_probs=176.0

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecCCcceeee--ecccccceeEEEEccCCCe-EEEEecCCCCCceEEEEccCce----
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDNK----   93 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~-l~~~~~~~~d~~i~vwd~~~~~----   93 (304)
                      +.+.|-...|++++.|.++++||+++.++...  +.+|.+.|.+++|.|.... +++|+.   ||.|.|||++-..    
T Consensus       106 l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgR---Dg~illWD~R~n~~d~~  182 (720)
T KOG0321|consen  106 LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGR---DGEILLWDCRCNGVDAL  182 (720)
T ss_pred             eccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccC---CCcEEEEEEeccchhhH
Confidence            45667567899999999999999999888766  8899999999999997665 555666   9999999986432    


Q ss_pred             ----------------e-------eeecccccccEEE---EEEcCCCCEEEEccc-CCeEEEEeCCcceeeceEEEeccc
Q 036585           94 ----------------Y-------SRYFKGHHDRVVL---LSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRP  146 (304)
Q Consensus        94 ----------------~-------~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~  146 (304)
                                      +       +...+.+...|.+   +.+..|...|++++. |+.|++||+++.............
T Consensus       183 e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~  262 (720)
T KOG0321|consen  183 EEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD  262 (720)
T ss_pred             HHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCccc
Confidence                            0       1111234444554   556678889999887 999999999987654433221111


Q ss_pred             eeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce--eEEEEeCCCCCCcceEE
Q 036585          147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEA  224 (304)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~~~i~~~  224 (304)
                      .....                  ......+.++.....|.+|++.+.|+.|++||+.+...  ...+.........+ .-
T Consensus       263 ~~~t~------------------skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks  323 (720)
T KOG0321|consen  263 KYPTH------------------SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KS  323 (720)
T ss_pred             CccCc------------------ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeee-ee
Confidence            00000                  01123567788888899999999999999999976432  22222111111122 23


Q ss_pred             EEcCCCcEEEEecCCCcEEEEecCCCce-eeeeeccCCCCceEEeCCCC-cEEEEecCc--eEEeccC
Q 036585          225 SFSPEGMFVISGSGDGSVHAWSVRSGKE-VASWMSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~~  288 (304)
                      ..+|++.+|++|+.|...++|.+.+.+. ...+.+|...|++++|.|.. .-++++++|  ++||++.
T Consensus       324 ~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  324 ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence            5789999999999999999999988654 56678999999999998843 456666888  9999884

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.8e-24  Score=156.69  Aligned_cols=228  Identities=18%  Similarity=0.233  Sum_probs=164.6

Q ss_pred             EEEEecCCcce-----eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee--eeecc--cccccEEEEE
Q 036585           39 IRLYDVTAATC-----LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--SRYFK--GHHDRVVLLS  109 (304)
Q Consensus        39 i~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~--~~~~~--~~~~~v~~~~  109 (304)
                      .+-|+.+..+.     +..+++|...|++++|+.||++|++++.   |++|++|++..-..  .+.++  -.-+-.+.+.
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~---Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~  139 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISG---DRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVV  139 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeC---CceEEEEecchhhhhhhhHhhccccCCCceEEE
Confidence            44565554433     3457899999999999999999999999   99999999976321  11111  0123457899


Q ss_pred             EcCCCCEEEE-cccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEE
Q 036585          110 LCSSKDCFIS-GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLM  188 (304)
Q Consensus       110 ~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  188 (304)
                      |.||-+-++. .-...++++|.+...+. .....+   .+.++  .           ..--+.|...+..+-...+++++
T Consensus       140 FapDc~s~vv~~~~g~~l~vyk~~K~~d-G~~~~~---~v~~D--~-----------~~f~~kh~v~~i~iGiA~~~k~i  202 (420)
T KOG2096|consen  140 FAPDCKSVVVSVKRGNKLCVYKLVKKTD-GSGSHH---FVHID--N-----------LEFERKHQVDIINIGIAGNAKYI  202 (420)
T ss_pred             ECCCcceEEEEEccCCEEEEEEeeeccc-CCCCcc---ccccc--c-----------cccchhcccceEEEeecCCceEE
Confidence            9998875544 44556889987653322 111000   00000  0           00001355566667777789999


Q ss_pred             EEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC---CC-----ceeeeeeccC
Q 036585          189 LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR---SG-----KEVASWMSFD  260 (304)
Q Consensus       189 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~---~~-----~~~~~~~~~~  260 (304)
                      ++++.|..|.+|+++ |+.+..+.   .....-+..+.||+|+++++++-.-.|++|..-   +|     ..+.++++|.
T Consensus       203 msas~dt~i~lw~lk-Gq~L~~id---tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~  278 (420)
T KOG2096|consen  203 MSASLDTKICLWDLK-GQLLQSID---TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ  278 (420)
T ss_pred             EEecCCCcEEEEecC-Cceeeeec---cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence            999999999999998 88888887   345566678999999999999988889999873   33     2356779999


Q ss_pred             CCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          261 TEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       261 ~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      ..|..++|+|+.+.+++.+.|  .+||+.+.+
T Consensus       279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr  310 (420)
T KOG2096|consen  279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR  310 (420)
T ss_pred             hheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence            999999999999999999999  999998764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.4e-24  Score=162.66  Aligned_cols=234  Identities=12%  Similarity=0.181  Sum_probs=190.1

Q ss_pred             eeEeecccCc-EEEEeeCCCeEEEEecCCccee--eeecccc-cceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           19 EILQSMEVGI-YLVTASDDESIRLYDVTAATCL--KTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        19 ~~i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~--~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      ....+.|+|. .+++++....+..||+.+.+..  ..+.++. ..+.....+|++++|+..+.   .|.|.+.-..+++.
T Consensus       261 ~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---~G~I~lLhakT~el  337 (514)
T KOG2055|consen  261 QKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---NGHIHLLHAKTKEL  337 (514)
T ss_pred             ceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc---CceEEeehhhhhhh
Confidence            3456778898 8999999999999999987643  3333443 46778889999999999998   99999999999999


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS  174 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (304)
                      +.+++ -.+.|..+.|+.+++.|++++.+|.|.+||++...++..+.-.+..                            
T Consensus       338 i~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v----------------------------  388 (514)
T KOG2055|consen  338 ITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV----------------------------  388 (514)
T ss_pred             hheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc----------------------------
Confidence            99888 6789999999999999999999999999999999887777644321                            


Q ss_pred             CceEEEEecCCcEEEEeeCCCeEEEEEcCC------CceeEEEEeCCCCCCcceEEEEcCCCcEEEEec--CCCcEEEEe
Q 036585          175 DANVVKFSNDGRLMLLTTMEGHIHVLDSFR------GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS--GDGSVHAWS  246 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~v~d  246 (304)
                      .-+.++.++++.+||+|+..|.|.|||..+      .+++..+.   .-...|++++|+||++.||.++  .+..+++-.
T Consensus       389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d---NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVH  465 (514)
T KOG2055|consen  389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD---NLTTAITSLQFNHDAQILAIASRVKKNALRLVH  465 (514)
T ss_pred             ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh---hhheeeeeeeeCcchhhhhhhhhccccceEEEe
Confidence            235688889999999999999999999643      34444444   3567899999999999998887  466799988


Q ss_pred             cCCCceeeeeecc---CCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585          247 VRSGKEVASWMSF---DTEPPVIKWAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       247 ~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~s~~~d--~~iw~~  287 (304)
                      +.+......++..   -+.++|++|+|.+.+||.|..+  +.+|.+
T Consensus       466 vPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  466 VPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             ccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence            8877666655433   3568999999999999999988  777754

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=2.6e-23  Score=164.68  Aligned_cols=272  Identities=12%  Similarity=0.200  Sum_probs=204.2

Q ss_pred             cceeeeecceeeEee---cccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585            9 EDKVSLELSEEILQS---MEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   85 (304)
Q Consensus         9 ~~~~~~~~~~~~i~~---~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~   85 (304)
                      .+.....+|.+.+.+   .+.|.+|++|+.||+||||.+.++.+++++.... .|.|++|+|.+..-+.+.+.  ...+.
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~--~~~~~  467 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAV--GECVL  467 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEe--cCceE
Confidence            345567788877554   4669999999999999999999999999887544 89999999987643222211  22233


Q ss_pred             EEEccCc---------------------------------e----eeeecccccccEEEEEEcCCCCEEEEccc---CCe
Q 036585           86 LLSLHDN---------------------------------K----YSRYFKGHHDRVVLLSLCSSKDCFISGSL---DRT  125 (304)
Q Consensus        86 vwd~~~~---------------------------------~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~  125 (304)
                      |.+..-|                                 +    -++..-.|...|..+.|+..|.||++...   ...
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS  547 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence            3332111                                 0    12233347889999999999999998755   357


Q ss_pred             EEEEeCCcceeeceEEEe--ccceeEecCCC-eEEEecCCCeEEEEecC---------CCCCceEEEEecCCcEEEEeeC
Q 036585          126 VLLWDQRAEKCQGLLRVQ--GRPAAAYDDQG-LVFGYEKGPLDIFSVGG---------DISDANVVKFSNDGRLMLLTTM  193 (304)
Q Consensus       126 i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~  193 (304)
                      |.|+++.....+..|...  ....+.|+|.. .++......+++|++..         ....|..++.+|.|..|++++.
T Consensus       548 VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~  627 (733)
T KOG0650|consen  548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY  627 (733)
T ss_pred             EEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence            999999877766555332  23356677765 55677778899998753         3456888999999999999999


Q ss_pred             CCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC-------CC--ceeeeeeccCCC-
Q 036585          194 EGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR-------SG--KEVASWMSFDTE-  262 (304)
Q Consensus       194 dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-------~~--~~~~~~~~~~~~-  262 (304)
                      |+.+..||+.-. ++.+++.   .|...+++++|++.-.++++|+.||++.|+.-.       +.  -+++.+++|... 
T Consensus       628 d~k~~WfDldlsskPyk~lr---~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~  704 (733)
T KOG0650|consen  628 DKKMCWFDLDLSSKPYKTLR---LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN  704 (733)
T ss_pred             CCeeEEEEcccCcchhHHhh---hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence            999999999754 4555666   588999999999999999999999999998532       11  236777888765 


Q ss_pred             ---CceEEeCCCCcEEEEecCc--eEEec
Q 036585          263 ---PPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       263 ---i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                         |....|+|...+|++++.|  +++|.
T Consensus       705 ~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  705 DLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             ccceEeecccCCCceEEecCCCceEEeeC
Confidence               8888999999999999999  88873

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=1.7e-23  Score=168.20  Aligned_cols=269  Identities=17%  Similarity=0.237  Sum_probs=195.2

Q ss_pred             cceee---EeecccCcEEEEeeCCCeEEEEecCCcc--ee-----eeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585           16 LSEEI---LQSMEVGIYLVTASDDESIRLYDVTAAT--CL-----KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   85 (304)
Q Consensus        16 ~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~   85 (304)
                      +|++-   +.|.|.+..|++++.|.++.+|...+..  -+     -...+...+....-|+|+++.+++-+.   -|..+
T Consensus       265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~---~Gg~h  341 (764)
T KOG1063|consen  265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR---TGGFH  341 (764)
T ss_pred             CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc---cCcEE
Confidence            56553   6688899999999999999999876542  11     122334566889999999999999888   99999


Q ss_pred             EEEccCc---eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee-ceEE---Eec--cceeEecC----
Q 036585           86 LLSLHDN---KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-GLLR---VQG--RPAAAYDD----  152 (304)
Q Consensus        86 vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~---~~~--~~~~~~~~----  152 (304)
                      +|.-.+.   .+...+.+|.+.|..++|+|.|.+|++.+.|.+-|++-.-..+.. ..+.   .++  ..++++-+    
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~  421 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ  421 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence            9983322   234456799999999999999999999999999998753311100 0000   000  00000000    


Q ss_pred             -----CCeEE------------------------------------EecCCCeE--------------------------
Q 036585          153 -----QGLVF------------------------------------GYEKGPLD--------------------------  165 (304)
Q Consensus       153 -----~~~~~------------------------------------~~~~~~~~--------------------------  165 (304)
                           +..++                                    +.+++...                          
T Consensus       422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~  501 (764)
T KOG1063|consen  422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT  501 (764)
T ss_pred             eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence                 00000                                    11111000                          


Q ss_pred             ----------------EEEecCCCCCceEEEEecCCcEEEEeeCCC-----eEEEEEcCCCceeEEEEeCCCCCCcceEE
Q 036585          166 ----------------IFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRNSTLEA  224 (304)
Q Consensus       166 ----------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~i~~~  224 (304)
                                      +..+.+|...|.+++.+|+++++++++...     .|++|+..+......+.   .|.-.|+.+
T Consensus       502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~---~HsLTVT~l  578 (764)
T KOG1063|consen  502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE---GHSLTVTRL  578 (764)
T ss_pred             CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec---ccceEEEEE
Confidence                            001235778899999999999999988653     59999999888888777   799999999


Q ss_pred             EEcCCCcEEEEecCCCcEEEEecCCCce----eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          225 SFSPEGMFVISGSGDGSVHAWSVRSGKE----VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      +|||||++|++.+.|+++.+|.......    ....+.|..-|++..|+|++.+++|+|.|  +++|...-.
T Consensus       579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            9999999999999999999999754322    23357899999999999999999999999  999977544

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.3e-22  Score=161.28  Aligned_cols=240  Identities=18%  Similarity=0.194  Sum_probs=193.6

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee--e
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS--R   96 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~--~   96 (304)
                      +.+.|. .|..|++.+.+|.|.-||+.+++++..+....+.|.+++.+|.++.++.++.   ||.+..++...++..  .
T Consensus        73 E~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd---dGvl~~~s~~p~~I~~~r  148 (691)
T KOG2048|consen   73 ESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCD---DGVLYDFSIGPDKITYKR  148 (691)
T ss_pred             eeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecC---CceEEEEecCCceEEEEe
Confidence            446666 5678889999999999999999999999999999999999999999999998   998888888777643  3


Q ss_pred             ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA  176 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  176 (304)
                      .+...++.|.++.|+|++..+++|+.||.|++||..++........+-...            .         +....-|
T Consensus       149 ~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l------------~---------k~~~~iV  207 (691)
T KOG2048|consen  149 SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL------------S---------KREPTIV  207 (691)
T ss_pred             ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc------------c---------cCCceEE
Confidence            444567899999999999999999999999999999888776332211100            0         0012235


Q ss_pred             eEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce----
Q 036585          177 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE----  252 (304)
Q Consensus       177 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~----  252 (304)
                      .++.|-.++ .+++|...|+|.+||...+..+..+.   .|...|.+++.+++++++++++.|+.|.-|...+.+.    
T Consensus       208 WSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~  283 (691)
T KOG2048|consen  208 WSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI  283 (691)
T ss_pred             EEEEEeecC-cEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee
Confidence            567776555 58999999999999999999999988   6899999999999999999999999999998766543    


Q ss_pred             eeeeeccCCCCceEEeCCCCcEEEEecCceEEeccCC
Q 036585          253 VASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDL  289 (304)
Q Consensus       253 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~  289 (304)
                      ......|...+.+++..++  .+++|+.|..+.....
T Consensus       284 ~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s  318 (691)
T KOG2048|consen  284 NSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS  318 (691)
T ss_pred             eccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence            2233578889999999887  8999999955554433

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.8e-24  Score=181.61  Aligned_cols=236  Identities=17%  Similarity=0.207  Sum_probs=187.4

Q ss_pred             EeecccCcE----EEEeeCCCeEEEEecCC------cceeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEc
Q 036585           21 LQSMEVGIY----LVTASDDESIRLYDVTA------ATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSL   89 (304)
Q Consensus        21 i~~~~~~~~----l~~~~~d~~i~vw~~~~------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~   89 (304)
                      +.|.+.|..    ||.|..||.|.+||...      ...+.+...|++.|..+.|++... .|++|+.   ||.|.|||+
T Consensus        70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~---~geI~iWDl  146 (1049)
T KOG0307|consen   70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD---DGEILIWDL  146 (1049)
T ss_pred             eeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC---CCcEEEecc
Confidence            556666554    89999999999999764      235667788999999999999776 7888887   999999999


Q ss_pred             cCceeeeecc--cccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585           90 HDNKYSRYFK--GHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI  166 (304)
Q Consensus        90 ~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (304)
                      ...+......  ...+.|.+++|+. ..+.|++++.+|.+.|||++..+.+..+....                      
T Consensus       147 nn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~----------------------  204 (1049)
T KOG0307|consen  147 NKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP----------------------  204 (1049)
T ss_pred             CCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC----------------------
Confidence            8866554442  2457899999986 45578899999999999999886655443221                      


Q ss_pred             EEecCCCCCceEEEEecCC-cEEEEeeCCC---eEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCC-cEEEEecCCC
Q 036585          167 FSVGGDISDANVVKFSNDG-RLMLLTTMEG---HIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDG  240 (304)
Q Consensus       167 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg---~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg  240 (304)
                           ....+..++|+|++ ..+++++.|.   .|.+||+|.- .+.+.++   .|...|.++.|++.+ .+|++++.|+
T Consensus       205 -----~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~---~H~~GilslsWc~~D~~lllSsgkD~  276 (1049)
T KOG0307|consen  205 -----GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE---GHQRGILSLSWCPQDPRLLLSSGKDN  276 (1049)
T ss_pred             -----CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc---ccccceeeeccCCCCchhhhcccCCC
Confidence                 11347789999986 3456665543   6999998753 4556665   799999999999955 8899999999


Q ss_pred             cEEEEecCCCceeeeeeccCCCCceEEeCCCCc-EEEEecCc--eEEeccCC
Q 036585          241 SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL-MFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       241 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d--~~iw~~~~  289 (304)
                      .|.+|+.++++.+..+......+..+.|.|... .++.++-|  |.||.+..
T Consensus       277 ~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  277 RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             CeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence            999999999999999988889999999999776 77777777  88887654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=4e-22  Score=145.84  Aligned_cols=234  Identities=16%  Similarity=0.186  Sum_probs=179.9

Q ss_pred             cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce
Q 036585           56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK  135 (304)
Q Consensus        56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  135 (304)
                      ....|..+.|+|.+..|++++-   ||++++||+...+....++ |..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssW---DgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSW---DGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEec---cCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence            3578999999999999999986   9999999999887666666 999999999987 4579999999999999999887


Q ss_pred             eeceEEEecc-ceeEec--CCCeEEEecCCCeEEEEecC--------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585          136 CQGLLRVQGR-PAAAYD--DQGLVFGYEKGPLDIFSVGG--------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       136 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  204 (304)
                      .......... .++...  .+..+.+.-++.+++|+...        ....|.++.  -.|..|++|+.+..+.+||+++
T Consensus        87 ~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~--v~g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   87 EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMD--VSGNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEe--ccCCEEEEeecCceEEEEEccc
Confidence            6555443322 233333  55677788899999998763        223444444  4678899999999999999998


Q ss_pred             CceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC----ceeeeeeccC---------CCCceEEeCCC
Q 036585          205 GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG----KEVASWMSFD---------TEPPVIKWAPG  271 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~---------~~i~~~~~~~~  271 (304)
                      ........ ...-+..+.++++-|++.-.++++-||.|.+=.+...    +....++.|.         -||++|+|+|-
T Consensus       165 ~~~~~q~r-eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~  243 (323)
T KOG1036|consen  165 LDEPFQRR-ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI  243 (323)
T ss_pred             ccchhhhc-cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence            76555332 1235678899999998888999999999888666554    3344555554         37999999999


Q ss_pred             CcEEEEecCc--eEEeccCCc-ccccccc
Q 036585          272 SLMFVTGSSE--LSFWIPDLS-KLGAYVG  297 (304)
Q Consensus       272 ~~~l~s~~~d--~~iw~~~~~-~~~~~~~  297 (304)
                      ...||||+.|  +.+|+...+ ++.++..
T Consensus       244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~  272 (323)
T KOG1036|consen  244 HGTFATGGSDGIVNIWDLFNRKRLKQLAK  272 (323)
T ss_pred             cceEEecCCCceEEEccCcchhhhhhccC
Confidence            9999999999  899998554 4555443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=2.5e-23  Score=165.75  Aligned_cols=264  Identities=17%  Similarity=0.199  Sum_probs=177.5

Q ss_pred             CcEEEEeeCCCeEEEEecCCcce------eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee--c
Q 036585           27 GIYLVTASDDESIRLYDVTAATC------LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY--F   98 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~--~   98 (304)
                      ...|+.+..||.|.++|......      +.....|...|..+.|.|....|++++.   |.++++||+.+.+.+..  +
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG---DsT~r~Wdvk~s~l~G~~~~  140 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG---DSTIRPWDVKTSRLVGGRLN  140 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC---Cceeeeeeeccceeecceee
Confidence            56899999999999999764322      3556679999999999997777888887   99999999999988776  8


Q ss_pred             ccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEe----cCCCeEEEecCCCeEEEEecCCC
Q 036585           99 KGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY----DDQGLVFGYEKGPLDIFSVGGDI  173 (304)
Q Consensus        99 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                      .+|.+.|.+++|.| +...|++|+.||.|.|||++..................    .+...      ...++.....+.
T Consensus       141 ~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp------~~kr~~k~kA~s  214 (720)
T KOG0321|consen  141 LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP------LKKRIRKWKAAS  214 (720)
T ss_pred             cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch------hhcccccccccc
Confidence            89999999999999 45589999999999999998654211100000000000    00000      000011111223


Q ss_pred             CCceE---EEEecCCcEEEEeeC-CCeEEEEEcCCCceeEEEEeC--------CCCCCcceEEEEcCCCcEEEEecCCCc
Q 036585          174 SDANV---VKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVK--------PVSRNSTLEASFSPEGMFVISGSGDGS  241 (304)
Q Consensus       174 ~~v~~---~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~--------~~~~~~i~~~~~s~~~~~l~~~~~dg~  241 (304)
                      ..+.+   +.+..|...|++++. |+.|+|||+++..........        ......++++..+..|.+|++.+.|+.
T Consensus       215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s  294 (720)
T KOG0321|consen  215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS  294 (720)
T ss_pred             CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence            33333   455578888888877 999999999876544332211        111345677888888899988888999


Q ss_pred             EEEEecCCCc--eeeeeeccCCC--CceEEeCCCCcEEEEecCc--eEEeccCCcc--ccccccCC
Q 036585          242 VHAWSVRSGK--EVASWMSFDTE--PPVIKWAPGSLMFVTGSSE--LSFWIPDLSK--LGAYVGRN  299 (304)
Q Consensus       242 i~v~d~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~--~~~~~~~~  299 (304)
                      |++||+.+..  ++..+.++...  -..-..+||+.++++|+.|  ..+|.++.-.  +..+.||.
T Consensus       295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght  360 (720)
T KOG0321|consen  295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHT  360 (720)
T ss_pred             EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcc
Confidence            9999997643  34444443221  1223468999999999999  7788775433  23445544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=2.1e-22  Score=154.64  Aligned_cols=242  Identities=12%  Similarity=0.134  Sum_probs=182.1

Q ss_pred             eeeEeecccC--cEEEEeeCCCeEEEEecCCc----ceeeeecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEcc
Q 036585           18 EEILQSMEVG--IYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLH   90 (304)
Q Consensus        18 ~~~i~~~~~~--~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~~   90 (304)
                      ..++.|+|..  +++|+|..-|.|-+||+.+.    .-+..+..|..+|.++.|+|. ...+++.+.   ||+|++-|++
T Consensus       189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy---DGtiR~~D~~  265 (498)
T KOG4328|consen  189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY---DGTIRLQDFE  265 (498)
T ss_pred             eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc---Cceeeeeeec
Confidence            3456677763  68999999999999999532    234567789999999999995 456777777   9999999999


Q ss_pred             Cceeeeeccc--ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585           91 DNKYSRYFKG--HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS  168 (304)
Q Consensus        91 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
                      .+.....+..  ....+..+.|+.+...++.+..=|...+||++++.....                            .
T Consensus       266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~----------------------------~  317 (498)
T KOG4328|consen  266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE----------------------------N  317 (498)
T ss_pred             chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch----------------------------h
Confidence            8754333332  445678888988777788887778999999998765221                            1


Q ss_pred             ecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCCceeEE-EEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEe
Q 036585          169 VGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS  246 (304)
Q Consensus       169 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d  246 (304)
                      +.-|...|+.++++|.. .+|++++.|++.+|||++.-..... +-....|...|.++.|||.+..|++.+.|..|+|||
T Consensus       318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence            22356689999999964 5788999999999999986544332 222225899999999999887899999999999999


Q ss_pred             cC----CCceeeeeeccCC------CCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          247 VR----SGKEVASWMSFDT------EPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       247 ~~----~~~~~~~~~~~~~------~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      ..    ...+...+. |..      .....+|.|+..++++|-.-  |-|++-+.++
T Consensus       398 ss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  398 SSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             cccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence            83    334444442 322      23456799999999998876  8888887766

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=6.3e-23  Score=159.26  Aligned_cols=236  Identities=11%  Similarity=0.206  Sum_probs=180.2

Q ss_pred             eeEeecccCc-EEEEeeCCCeEEEEecCCc--ce--eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce
Q 036585           19 EILQSMEVGI-YLVTASDDESIRLYDVTAA--TC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   93 (304)
Q Consensus        19 ~~i~~~~~~~-~l~~~~~d~~i~vw~~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~   93 (304)
                      ..+.|..... .+++.+.|..+++|.-...  +.  +..+.+.  .-.|++......++++|+.   .+.|+|||++...
T Consensus        38 ~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~---~~~Vkiwdl~~kl  112 (673)
T KOG4378|consen   38 FSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQ---SGCVKIWDLRAKL  112 (673)
T ss_pred             eeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCc---CceeeehhhHHHH
Confidence            3445554442 2334456778999974422  12  2222222  3455655556688999988   9999999999877


Q ss_pred             eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585           94 YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI  173 (304)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                      +.+.+++|+..|+++.++-...+|++++..|.|.+..+.++.....+....                            .
T Consensus       113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s----------------------------g  164 (673)
T KOG4378|consen  113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS----------------------------G  164 (673)
T ss_pred             HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC----------------------------C
Confidence            888899999999999999999999999999999999999887776665331                            2


Q ss_pred             CCceEEEEecCCcE-EEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEecCCCc
Q 036585          174 SDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWSVRSGK  251 (304)
Q Consensus       174 ~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~  251 (304)
                      ..|+-+.|+|..+. |.+++.+|.|.+||+....++..+..  .|..+...++|+| +..+|++.+.|..|.+||.+..+
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~  242 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE--AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA  242 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh--hccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence            34567899998765 55688999999999988777666543  5888999999999 55678889999999999998777


Q ss_pred             eeeeeeccCCCCceEEeCCCCcEEEEecCceEEeccCCc
Q 036585          252 EVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLS  290 (304)
Q Consensus       252 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~  290 (304)
                      ....+. ...|.+.++|+++|.+|+.|....+|+-++++
T Consensus       243 s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  243 STDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             ccceee-ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence            666664 56789999999999999999998555544443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.91  E-value=7.2e-22  Score=145.59  Aligned_cols=241  Identities=13%  Similarity=0.200  Sum_probs=180.1

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCc-------c-----eeeeecc-cccceeEEEEc-------cCCCeEEEEecCC
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAA-------T-----CLKTINS-KKYGVDLVCFT-------SHPTTVIYSSKNG   79 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~-------~-----~~~~~~~-~~~~v~~~~~~-------~~~~~l~~~~~~~   79 (304)
                      ...|+|||..|++-+.|..+++|++...       .     ...+++. ....|..-+|-       |+..++++.+.  
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr--  131 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR--  131 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc--
Confidence            3578999999999999999999997521       0     0011111 22457777775       56667777777  


Q ss_pred             CCCceEEEEccCceeeeeccc--ccc---cEEEEEEcCCCCEEEEcccCCeEEEEeC-CcceeeceEEEeccceeEecCC
Q 036585           80 WDESLRLLSLHDNKYSRYFKG--HHD---RVVLLSLCSSKDCFISGSLDRTVLLWDQ-RAEKCQGLLRVQGRPAAAYDDQ  153 (304)
Q Consensus        80 ~d~~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~  153 (304)
                       +.-|++||.-+|+...++.+  |.+   ...+++|+|||.+|++|.. ..|+++|+ +.++--.........       
T Consensus       132 -~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~-------  202 (406)
T KOG2919|consen  132 -DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKG-------  202 (406)
T ss_pred             -cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcc-------
Confidence             99999999999998777653  444   3468999999999998764 78999998 544432222110000       


Q ss_pred             CeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcE
Q 036585          154 GLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  232 (304)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  232 (304)
                                     -.+..+.+.+++|+|.. +.+++++...++-||.-..+.++..+-   +|.+.|+.++|.++|+.
T Consensus       203 ---------------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg---gh~gGvThL~~~edGn~  264 (406)
T KOG2919|consen  203 ---------------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG---GHGGGVTHLQWCEDGNK  264 (406)
T ss_pred             ---------------cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec---ccCCCeeeEEeccCcCe
Confidence                           01344678899999955 589999999999999988888888877   79999999999999999


Q ss_pred             EEEecC-CCcEEEEecCC-CceeeeeeccCC-CCceEEe--CCCCcEEEEecCc--eEEeccCC
Q 036585          233 VISGSG-DGSVHAWSVRS-GKEVASWMSFDT-EPPVIKW--APGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       233 l~~~~~-dg~i~v~d~~~-~~~~~~~~~~~~-~i~~~~~--~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      |++|.. |-.|-.||++. ..++..+..|.. .-..|.|  .|++++|++|+.|  |++|+.+.
T Consensus       265 lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  265 LFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             ecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            999974 66799999986 456777777765 3444554  6889999999888  99998854

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=7.2e-23  Score=160.97  Aligned_cols=249  Identities=20%  Similarity=0.246  Sum_probs=184.4

Q ss_pred             eeecceeeEeec---ccCcEEEEeeCCCeEEEEecCC--------cceeeeecccccceeEEEEccCCCeEEEEecCCCC
Q 036585           13 SLELSEEILQSM---EVGIYLVTASDDESIRLYDVTA--------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD   81 (304)
Q Consensus        13 ~~~~~~~~i~~~---~~~~~l~~~~~d~~i~vw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d   81 (304)
                      ++..|...++.+   +....|++++.||.+++|+++.        -+++.++.+|.++|.|+++.+++..+++|+.   |
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~---D  365 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI---D  365 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc---C
Confidence            444555555444   4467899999999999999942        3578899999999999999999999999999   9


Q ss_pred             CceEEEEccCc----------eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEec
Q 036585           82 ESLRLLSLHDN----------KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD  151 (304)
Q Consensus        82 ~~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  151 (304)
                      |+|+.|++...          .....+.+|++.|+.+++|+....|++++.||+++.|+...... ..+...        
T Consensus       366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~--------  436 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP--------  436 (577)
T ss_pred             ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc--------
Confidence            99999976532          12345779999999999999988999999999999999876554 222111        


Q ss_pred             CCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCCceeEEEEeCC----CCCCcceEEEE
Q 036585          152 DQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKP----VSRNSTLEASF  226 (304)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~~~i~~~~~  226 (304)
                                         ........+.+-... ..+++...-+.-.++++........+....    .....+..+.+
T Consensus       437 -------------------~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs  497 (577)
T KOG0642|consen  437 -------------------KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS  497 (577)
T ss_pred             -------------------cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEe
Confidence                               011222334443322 222222233333344444444444443211    11245677889


Q ss_pred             cCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585          227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       227 s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~  292 (304)
                      +|...+.+++..|+.|+++|..+++++.....|...++++++.|+|.+|++++.|  +++|..+....
T Consensus       498 ~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  498 HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             cCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence            9999999999999999999999999999999999999999999999999999999  88888765543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=2.3e-22  Score=161.65  Aligned_cols=260  Identities=16%  Similarity=0.219  Sum_probs=200.0

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      .-+.+-|||..|+.+..+ .+.+||.+.|.+++++++|++.|+|++|+.+|+.+++|+.   |..|.+|+..-.- +..+
T Consensus        16 ~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a---DK~VI~W~~klEG-~LkY   90 (1081)
T KOG1538|consen   16 NDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA---DKSVIIWTSKLEG-ILKY   90 (1081)
T ss_pred             heeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC---ceeEEEecccccc-eeee
Confidence            447888999888887654 6999999999999999999999999999999999999999   9999999864322 2223


Q ss_pred             ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEE--EecCCCeEEEE--------
Q 036585           99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF--GYEKGPLDIFS--------  168 (304)
Q Consensus        99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------  168 (304)
                       .|.+.|.|+.|+|-.+.|++++-. ..-+|..+................+|..+|.++  +..+|.+.+.+        
T Consensus        91 -SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~  168 (1081)
T KOG1538|consen   91 -SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVK  168 (1081)
T ss_pred             -ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceE
Confidence             489999999999988888888763 466887765544433333333456677777544  44555555543        


Q ss_pred             ---ecCCCCCceEEEEecCC-----cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC
Q 036585          169 ---VGGDISDANVVKFSNDG-----RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG  240 (304)
Q Consensus       169 ---~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  240 (304)
                         ..+..++|.+++|+|..     ..+++.....++.+|.+. |+.+..-.   .......|+.+.|+|.+++.|+.|+
T Consensus       169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r---~L~FdP~CisYf~NGEy~LiGGsdk  244 (1081)
T KOG1538|consen  169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR---ALNFDPCCISYFTNGEYILLGGSDK  244 (1081)
T ss_pred             EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc---cCCCCchhheeccCCcEEEEccCCC
Confidence               34567899999999963     578888888888888874 44444322   2445567899999999999999999


Q ss_pred             cEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          241 SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       241 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      .+++|- +.|-.+.++......|+.++..|++++++.|+.|  +--|++-..
T Consensus       245 ~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  245 QLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             ceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence            999996 6777888887788899999999999999999999  444544333

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=1.1e-22  Score=156.11  Aligned_cols=213  Identities=16%  Similarity=0.213  Sum_probs=164.2

Q ss_pred             ecCCcceeeeecccccceeEEEEccCCC--eEEEEecCCCCCceEEEEccCc----eeeeecccccccEEEEEEcC-CCC
Q 036585           43 DVTAATCLKTINSKKYGVDLVCFTSHPT--TVIYSSKNGWDESLRLLSLHDN----KYSRYFKGHHDRVVLLSLCS-SKD  115 (304)
Q Consensus        43 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~  115 (304)
                      |+.+-.....++.+.+.|.+++|+|..+  .+++|..   -|.|-+||+.+.    ..+..+..|..+|.++.|+| +..
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK---~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s  248 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDK---GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS  248 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEccC---CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh
Confidence            3334445556667888999999999765  4555555   899999999532    23566778999999999999 556


Q ss_pred             EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCC
Q 036585          116 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG  195 (304)
Q Consensus       116 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  195 (304)
                      .+++.+.||+|+.-|++.......+...                           ........+.|+.+...++.+..=|
T Consensus       249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~---------------------------~d~~~fs~~d~~~e~~~vl~~~~~G  301 (498)
T KOG4328|consen  249 QIYSSSYDGTIRLQDFEGNISEEVLSLD---------------------------TDNIWFSSLDFSAESRSVLFGDNVG  301 (498)
T ss_pred             heeeeccCceeeeeeecchhhHHHhhcC---------------------------ccceeeeeccccCCCccEEEeeccc
Confidence            8999999999999999877655444322                           1223456688888888888888888


Q ss_pred             eEEEEEcCCCce-eEEEEeCCCCCCcceEEEEcCCC-cEEEEecCCCcEEEEecCCCcee----eeeeccCCCCceEEeC
Q 036585          196 HIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVHAWSVRSGKEV----ASWMSFDTEPPVIKWA  269 (304)
Q Consensus       196 ~i~~~d~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~~~~i~~~~~~  269 (304)
                      ...+||++++.. ...+.   .|...|..++++|.. .+||+++.|++.+|||++.....    -....|...|.+..||
T Consensus       302 ~f~~iD~R~~~s~~~~~~---lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS  378 (498)
T KOG4328|consen  302 NFNVIDLRTDGSEYENLR---LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS  378 (498)
T ss_pred             ceEEEEeecCCccchhhh---hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence            999999998765 34444   477799999999954 56899999999999999864332    2335699999999999


Q ss_pred             CCCcEEEEecCc--eEEeccC
Q 036585          270 PGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       270 ~~~~~l~s~~~d--~~iw~~~  288 (304)
                      |.+-.|++.+.|  |+||+-.
T Consensus       379 Ps~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  379 PSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             CCCCceEeeccCCceEEeecc
Confidence            988778888888  9999873

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.90  E-value=4.6e-22  Score=144.43  Aligned_cols=235  Identities=13%  Similarity=0.235  Sum_probs=173.3

Q ss_pred             Eeeccc-CcEEEEeeCC-------CeEEEEecCCc---------ceeeeec-ccccceeEEEEccCCCeEEEEecCCCCC
Q 036585           21 LQSMEV-GIYLVTASDD-------ESIRLYDVTAA---------TCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDE   82 (304)
Q Consensus        21 i~~~~~-~~~l~~~~~d-------~~i~vw~~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~   82 (304)
                      ++.+|. .++|+|+..+       -.+.||.+...         +++..+. .+-+.+.|+.|.|++..+++-.    |.
T Consensus        69 las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~----dn  144 (370)
T KOG1007|consen   69 LASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD----DN  144 (370)
T ss_pred             hhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec----cC
Confidence            344554 4566665442       23679987632         3344454 3456899999999999999988    89


Q ss_pred             ceEEEEccCcee-eeecc-----cccccEEEEEEcC--CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCC
Q 036585           83 SLRLLSLHDNKY-SRYFK-----GHHDRVVLLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG  154 (304)
Q Consensus        83 ~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  154 (304)
                      .|.+|++..+.. +..+.     ++....++-+|+|  +++.+++. .|+++..||+++......+.             
T Consensus       145 ~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~-------------  210 (370)
T KOG1007|consen  145 NIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIE-------------  210 (370)
T ss_pred             ceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchh-------------
Confidence            999999987654 33222     3566788999998  77777765 47999999999887665554             


Q ss_pred             eEEEecCCCeEEEEecCCCCCceEEEEecCCc-EEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcC-CCc
Q 036585          155 LVFGYEKGPLDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSP-EGM  231 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~-~~~  231 (304)
                                     ..|...|..+.|+|+.+ +|++++.||.|++||++.- .++.++.   +|...+.++.|+| ..+
T Consensus       211 ---------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~---~HsHWvW~VRfn~~hdq  272 (370)
T KOG1007|consen  211 ---------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP---GHSHWVWAVRFNPEHDQ  272 (370)
T ss_pred             ---------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC---CCceEEEEEEecCccce
Confidence                           24667889999999876 5777899999999999854 3455555   7999999999999 456


Q ss_pred             EEEEecCCCcEEEEecCCCc-----------------------------eeeeeeccCCCCceEEeCCCCc-EEEEecCc
Q 036585          232 FVISGSGDGSVHAWSVRSGK-----------------------------EVASWMSFDTEPPVIKWAPGSL-MFVTGSSE  281 (304)
Q Consensus       232 ~l~~~~~dg~i~v~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d  281 (304)
                      ++++|+.|..|.+|...+-.                             .+.++..|...|++++|+.-.. .+|+-+.|
T Consensus       273 LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD  352 (370)
T KOG1007|consen  273 LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD  352 (370)
T ss_pred             EEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC
Confidence            88999999999999653210                             2346678999999999998555 66788888


Q ss_pred             eEEeccCCcc
Q 036585          282 LSFWIPDLSK  291 (304)
Q Consensus       282 ~~iw~~~~~~  291 (304)
                      .|+-.-+..+
T Consensus       353 GRviIs~V~r  362 (370)
T KOG1007|consen  353 GRVIISSVPR  362 (370)
T ss_pred             ceEEeecCCh
Confidence            6665544433

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.6e-22  Score=154.61  Aligned_cols=200  Identities=18%  Similarity=0.233  Sum_probs=158.9

Q ss_pred             ceeEEEEcc-------CCCeEEEEecCCCCCceEEEEccCce---ee------------------eecccccccEEEEEE
Q 036585           59 GVDLVCFTS-------HPTTVIYSSKNGWDESLRLLSLHDNK---YS------------------RYFKGHHDRVVLLSL  110 (304)
Q Consensus        59 ~v~~~~~~~-------~~~~l~~~~~~~~d~~i~vwd~~~~~---~~------------------~~~~~~~~~v~~~~~  110 (304)
                      ...|++|..       .|++++.|+.   |..|.|||+.-..   +.                  ..-.+|++.|.++.|
T Consensus       175 fPLC~ewld~~~~~~~~gNyvAiGtm---dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~  251 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGNYVAIGTM---DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW  251 (463)
T ss_pred             cchhhhhhhcCCCCCCCcceEEEecc---CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence            345666653       3579999998   9999999985211   00                  112368899999999


Q ss_pred             cCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC-CcEE
Q 036585          111 CSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND-GRLM  188 (304)
Q Consensus       111 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l  188 (304)
                      +.. .+.|++|+.|.+|++||+.++++...+.                             .|...|.++.|+|. ..+|
T Consensus       252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-----------------------------~~~k~Vq~l~wh~~~p~~L  302 (463)
T KOG0270|consen  252 NRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-----------------------------HHGKKVQTLEWHPYEPSVL  302 (463)
T ss_pred             ccccceeEEecCCCceEEEEEcCCCCcceehh-----------------------------hcCCceeEEEecCCCceEE
Confidence            864 4589999999999999999999988775                             36678999999995 5789


Q ss_pred             EEeeCCCeEEEEEcCCCce-eEEEEeCCCCCCcceEEEEcCCC-cEEEEecCCCcEEEEecCCC-ceeeeeeccCCCCce
Q 036585          189 LLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVHAWSVRSG-KEVASWMSFDTEPPV  265 (304)
Q Consensus       189 ~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~  265 (304)
                      ++|+.|+++.+.|.+.... -..++    ..+.|-.++|.|.. ..++++..||.|+-+|+++. +++.+++.|.++|.+
T Consensus       303 LsGs~D~~V~l~D~R~~~~s~~~wk----~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISg  378 (463)
T KOG0270|consen  303 LSGSYDGTVALKDCRDPSNSGKEWK----FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISG  378 (463)
T ss_pred             EeccccceEEeeeccCccccCceEE----eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcce
Confidence            9999999999999995322 23333    45788899999954 56778889999999999875 889999999999999


Q ss_pred             EEeCCCC-cEEEEecCc--eEEeccCCccccc
Q 036585          266 IKWAPGS-LMFVTGSSE--LSFWIPDLSKLGA  294 (304)
Q Consensus       266 ~~~~~~~-~~l~s~~~d--~~iw~~~~~~~~~  294 (304)
                      |++++.- .++++++.|  +++|+++....+.
T Consensus       379 l~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~  410 (463)
T KOG0270|consen  379 LSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS  410 (463)
T ss_pred             EEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence            9999865 467888888  9999998766543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=7.8e-21  Score=134.93  Aligned_cols=240  Identities=10%  Similarity=0.095  Sum_probs=177.0

Q ss_pred             eecccCcEEEEeeCCCeEEEEecCC---------c-ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC
Q 036585           22 QSMEVGIYLVTASDDESIRLYDVTA---------A-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   91 (304)
Q Consensus        22 ~~~~~~~~l~~~~~d~~i~vw~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~   91 (304)
                      +++|.+++|+.|..+|.|-+..+++         + ..+...++|.++++.++|.  ..+|++++    ||.|+=|..+.
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g----dG~V~gw~W~E   90 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG----DGLVYGWEWNE   90 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc----CceEEEeeehh
Confidence            5678899999999999999998763         2 2344558899999999996  66788887    99999997754


Q ss_pred             cee------eeec--ccc-----cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585           92 NKY------SRYF--KGH-----HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG  158 (304)
Q Consensus        92 ~~~------~~~~--~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (304)
                      ...      ....  .-|     -..|.++...|..+-++.++.|+.++-||+++++..+.++                 
T Consensus        91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-----------------  153 (325)
T KOG0649|consen   91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-----------------  153 (325)
T ss_pred             hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-----------------
Confidence            321      1111  112     2368889999977777777799999999999999888776                 


Q ss_pred             ecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC-------CCCCcceEEEEcCCCc
Q 036585          159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-------VSRNSTLEASFSPEGM  231 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-------~~~~~i~~~~~s~~~~  231 (304)
                                  +|+..+.++.--.....+++|+.||++++||+++++.+..+....       .....|.+++-  +..
T Consensus       154 ------------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~ed  219 (325)
T KOG0649|consen  154 ------------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NED  219 (325)
T ss_pred             ------------CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCc
Confidence                        788899999885555569999999999999999999988876321       12234555554  566


Q ss_pred             EEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecC-c-eEEeccCCccccccccCCCCC
Q 036585          232 FVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSS-E-LSFWIPDLSKLGAYVGRNRGC  302 (304)
Q Consensus       232 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d-~~iw~~~~~~~~~~~~~~~g~  302 (304)
                      +|++|+ ...+.+|++++.++...++ ..+++..+.|..|  .+++++. + +.-|.++...-........+|
T Consensus       220 WlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c  288 (325)
T KOG0649|consen  220 WLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTAC  288 (325)
T ss_pred             eEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccce
Confidence            888886 4569999999999887775 5567788888544  4455553 3 888887765544444444444

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.90  E-value=3.2e-22  Score=143.41  Aligned_cols=251  Identities=10%  Similarity=0.127  Sum_probs=180.7

Q ss_pred             eeeeecceeeEeeccc--CcEEEEeeCCCeEEEEecCCcceeeeec-ccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           11 KVSLELSEEILQSMEV--GIYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        11 ~~~~~~~~~~i~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ...++.|...+.+...  ..+|.+|..-|.|++|++++.+.+..++ .+...|+.+.--|+ ..+.+-+.   |..+.+|
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgR---d~~L~lw   82 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGR---DPLLILW   82 (323)
T ss_pred             eeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCC---CceEEEE
Confidence            3445566666555433  5679999999999999999999888888 56778888888887 45666666   9999999


Q ss_pred             EccCceeeee--------------c---------------------------------------ccccccEEEEEEcC-C
Q 036585           88 SLHDNKYSRY--------------F---------------------------------------KGHHDRVVLLSLCS-S  113 (304)
Q Consensus        88 d~~~~~~~~~--------------~---------------------------------------~~~~~~v~~~~~~~-~  113 (304)
                      ++.-+..+..              +                                       .+..+.+.+..+.. .
T Consensus        83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c  162 (323)
T KOG0322|consen   83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC  162 (323)
T ss_pred             EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence            9865321100              0                                       01123445554322 2


Q ss_pred             CC--EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEe
Q 036585          114 KD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLT  191 (304)
Q Consensus       114 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  191 (304)
                      +.  ++++|..+|.+.+||+.++.....++.....                   +.....|..+|.++.|.+.-..=++|
T Consensus       163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv-------------------~~~~ash~qpvlsldyas~~~rGisg  223 (323)
T KOG0322|consen  163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV-------------------ESPNASHKQPVLSLDYASSCDRGISG  223 (323)
T ss_pred             cceEEEEEeccCCeEEEEEccCCceeecccccccc-------------------ccchhhccCcceeeeechhhcCCcCC
Confidence            22  4667778889999998877443333211111                   12233578899999998765556777


Q ss_pred             eCCCeEEEEEcCCC--ce--eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEE
Q 036585          192 TMEGHIHVLDSFRG--TL--LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIK  267 (304)
Q Consensus       192 ~~dg~i~~~d~~~~--~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  267 (304)
                      +.+-.+..|++...  ..  ...+.   -.+-.+..+.+-||++.+|+++.|+.||||+.++..++..++.|.+.|++++
T Consensus       224 ga~dkl~~~Sl~~s~gslq~~~e~~---lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA  300 (323)
T KOG0322|consen  224 GADDKLVMYSLNHSTGSLQIRKEIT---LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA  300 (323)
T ss_pred             CccccceeeeeccccCcccccceEE---ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE
Confidence            77778888887532  22  22222   2344577788999999999999999999999999999999999999999999


Q ss_pred             eCCCCcEEEEecCc--eEEecc
Q 036585          268 WAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       268 ~~~~~~~l~s~~~d--~~iw~~  287 (304)
                      |+|+...+|.++.|  |.+|++
T Consensus       301 fspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  301 FSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eCCCCchhhhccCCceEEeeec
Confidence            99999999999999  888975

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4.3e-22  Score=147.62  Aligned_cols=225  Identities=21%  Similarity=0.307  Sum_probs=167.4

Q ss_pred             cEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEcc--CCCeEEEEecCCCCCceEEEEccCceee--eeccccc-
Q 036585           28 IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLRLLSLHDNKYS--RYFKGHH-  102 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~vwd~~~~~~~--~~~~~~~-  102 (304)
                      ..+|++-..|+|++||..+++.+..++++...++.+.|..  .+..+.+++.   ||+|++||++.....  ..+..+. 
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ss---DG~Vr~wD~Rs~~e~a~~~~~~~~~  117 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSS---DGTVRLWDIRSQAESARISWTQQSG  117 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEecc---CCeEEEEEeecchhhhheeccCCCC
Confidence            6788898999999999999999999999999999999987  4567788887   999999999986543  3344455 


Q ss_pred             ccEEEEEEcCCCCEEEEcc----cCCeEEEEeCCccee-eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585          103 DRVVLLSLCSSKDCFISGS----LDRTVLLWDQRAEKC-QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus       103 ~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      .+..+++..-+++.+++|.    .+-.+.+||+|..+. +..+.                            +.|...|+
T Consensus       118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~----------------------------eSH~DDVT  169 (376)
T KOG1188|consen  118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN----------------------------ESHNDDVT  169 (376)
T ss_pred             CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh----------------------------hhccCcce
Confidence            4677787776777888875    366899999998766 33332                            35889999


Q ss_pred             EEEEecC-CcEEEEeeCCCeEEEEEcCCCc----eeEEEEeCCCCCCcceEEEEcCCC-cEEEEecCCCcEEEEecCCCc
Q 036585          178 VVKFSND-GRLMLLTTMEGHIHVLDSFRGT----LLSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVHAWSVRSGK  251 (304)
Q Consensus       178 ~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~  251 (304)
                      +++|+|+ .+.|++|+.||-|.+||+....    +...+.    +...|..+.|..++ +.|.+-+......+|+++.+.
T Consensus       170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN----~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN----HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc----ccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            9999995 5789999999999999986542    122222    55567777777655 335566666667777665443


Q ss_pred             e-------------------------------------------------------------eeeeec-cCCCCceEEeC
Q 036585          252 E-------------------------------------------------------------VASWMS-FDTEPPVIKWA  269 (304)
Q Consensus       252 ~-------------------------------------------------------------~~~~~~-~~~~i~~~~~~  269 (304)
                      +                                                             +..+.+ |..-|+++.|.
T Consensus       246 ~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~  325 (376)
T KOG1188|consen  246 EETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFD  325 (376)
T ss_pred             hhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhh
Confidence            1                                                             112222 44556778888


Q ss_pred             CCCcEEEEecCc--eEEecc
Q 036585          270 PGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       270 ~~~~~l~s~~~d--~~iw~~  287 (304)
                      ..+.++.||++|  +.+|..
T Consensus       326 ~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  326 VKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             cccceeeccCCCceEEEEec
Confidence            888899999999  888873

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=4.1e-21  Score=145.47  Aligned_cols=262  Identities=16%  Similarity=0.187  Sum_probs=184.4

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecC--------C--------cceeeeecccccceeEEEEccCCCeEEEEecCCCCC
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVT--------A--------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE   82 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~   82 (304)
                      +.+.|+++|++||+|+.+|.|.+|-..        +        ....+.+.+|...+..++|+|++.++++++.   |.
T Consensus        69 N~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~---dn  145 (434)
T KOG1009|consen   69 NVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV---DN  145 (434)
T ss_pred             EEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec---cc
Confidence            457889999999999999999999765        2        2344667789999999999999999999998   99


Q ss_pred             ceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585           83 SLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG  162 (304)
Q Consensus        83 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (304)
                      .+++||+..|+....+..|...+..++|.|-++++++-+.|...+.+.+...+............-...+      ....
T Consensus       146 s~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~------~e~~  219 (434)
T KOG1009|consen  146 SVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE------REGK  219 (434)
T ss_pred             eEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC------CCcc
Confidence            9999999999999999999999999999999999999999998888777655544433321111101100      0111


Q ss_pred             CeEEEEecCCCCCceEEEEecCCcEEEEeeC----CC-----eEEEEEcCC-CceeEEEEeCCCCCCcceEEEEcC----
Q 036585          163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTM----EG-----HIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSP----  228 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-----~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~~s~----  228 (304)
                      ..+++.-+.-..-...++|+|+|.++++.+.    .+     ..++|+-.. .++...+.   ....+...+.|+|    
T Consensus       220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp---~~~k~~lavr~~pVy~e  296 (434)
T KOG1009|consen  220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP---SPKKPALAVRFSPVYYE  296 (434)
T ss_pred             eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC---CCCcceEEEEeeeeEEE
Confidence            1223333333345567899999999887542    22     234444321 12222222   3344455555554    


Q ss_pred             --------------CCcEEEEecCCCcEEEEecCCCceeeee-eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          229 --------------EGMFVISGSGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       229 --------------~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                                    .+-.+|.++ .+.|+|||.++..++... .-|-.+|+.++|++||.+|+..|.|  ..+-.++...
T Consensus       297 lrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  297 LRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             eccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence                          222344554 557999999998887666 5588999999999999999999999  5665555554


Q ss_pred             cc
Q 036585          292 LG  293 (304)
Q Consensus       292 ~~  293 (304)
                      +.
T Consensus       376 lg  377 (434)
T KOG1009|consen  376 LG  377 (434)
T ss_pred             cc
Confidence            44

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=9.7e-22  Score=149.59  Aligned_cols=204  Identities=16%  Similarity=0.138  Sum_probs=158.8

Q ss_pred             cceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           16 LSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        16 ~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      +.+..+++..+|..|++++.||++|||+..+...+.....|...|.++.|+||++.|++.+.   | ..+||+.+++..+
T Consensus       145 g~~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~---d-~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  145 GQQKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA---D-SARVWSVNTGAAL  220 (398)
T ss_pred             CcceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC---C-ceEEEEeccCchh
Confidence            34578999999999999999999999998888888888889999999999999999999997   8 9999999999766


Q ss_pred             eeccc--ccccEEEEEEcCCC---C--EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585           96 RYFKG--HHDRVVLLSLCSSK---D--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS  168 (304)
Q Consensus        96 ~~~~~--~~~~v~~~~~~~~~---~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
                      .....  -......+.|+.++   .  .++....-+.|+.||+.....-..++...                        
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~------------------------  276 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK------------------------  276 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh------------------------
Confidence            65542  22356778888766   2  23333445567776654332211111000                        


Q ss_pred             ecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          169 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       169 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                      .-.....|++++.+++|++++.|+.||.|-+++..+.+.....+.  .|...|+.+.|+||.+++++.+.+....|..+.
T Consensus       277 ~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  277 KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            001224789999999999999999999999999988776665553  688899999999999999999999999888775


Q ss_pred             C
Q 036585          249 S  249 (304)
Q Consensus       249 ~  249 (304)
                      -
T Consensus       355 v  355 (398)
T KOG0771|consen  355 V  355 (398)
T ss_pred             e
Confidence            3

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.3e-20  Score=136.80  Aligned_cols=213  Identities=15%  Similarity=0.261  Sum_probs=159.1

Q ss_pred             cccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc----eeeeecccccccEEEEEEcC--CCCEEEEcccCCeEE
Q 036585           54 NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN----KYSRYFKGHHDRVVLLSLCS--SKDCFISGSLDRTVL  127 (304)
Q Consensus        54 ~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~  127 (304)
                      .+|..-|+++.|.+.|+++++++.   |++++|||..+.    .+....+.|.+.|..+.|.+  -|+.+++++.|+++.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSs---Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSS---DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccC---CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            368888999999999999999999   999999997543    35566788999999999975  588999999999999


Q ss_pred             EEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC--CcEEEEeeCCCeEEEEEcCCC
Q 036585          128 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRG  205 (304)
Q Consensus       128 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~  205 (304)
                      ||.-.....    ..++.                .=++.-.+....+.|+.+.|.|.  |-.|++++.||.++||+....
T Consensus        87 iWEE~~~~~----~~~~~----------------~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp  146 (361)
T KOG2445|consen   87 IWEEQEKSE----EAHGR----------------RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP  146 (361)
T ss_pred             eeeeccccc----ccccc----------------eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence            997531111    10000                00112223356678999999995  678999999999999986543


Q ss_pred             ------ceeEEEE----eCCCCCCcceEEEEcC---CCcEEEEecCC-----CcEEEEecCCCc----eeeeeeccCCCC
Q 036585          206 ------TLLSTYN----VKPVSRNSTLEASFSP---EGMFVISGSGD-----GSVHAWSVRSGK----EVASWMSFDTEP  263 (304)
Q Consensus       206 ------~~~~~~~----~~~~~~~~i~~~~~s~---~~~~l~~~~~d-----g~i~v~d~~~~~----~~~~~~~~~~~i  263 (304)
                            ++...++    .+..+..+..|+.|+|   ...+||.|+.+     +.++||......    .+.++.+|..+|
T Consensus       147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI  226 (361)
T KOG2445|consen  147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI  226 (361)
T ss_pred             cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc
Confidence                  2222222    1112556778899998   34678888765     478999875432    366778999999


Q ss_pred             ceEEeCCC----CcEEEEecCc-eEEeccCC
Q 036585          264 PVIKWAPG----SLMFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       264 ~~~~~~~~----~~~l~s~~~d-~~iw~~~~  289 (304)
                      +.|+|.|+    ..+||+++.| ++||.+..
T Consensus       227 ~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~  257 (361)
T KOG2445|consen  227 RDISWAPNIGRSYHLLAVATKDGVRIFKVKV  257 (361)
T ss_pred             eeeeeccccCCceeeEEEeecCcEEEEEEee
Confidence            99999995    3689999999 99998763

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.88  E-value=1.3e-22  Score=166.51  Aligned_cols=265  Identities=18%  Similarity=0.278  Sum_probs=188.9

Q ss_pred             eeecceeeEee---cccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc
Q 036585           13 SLELSEEILQS---MEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   89 (304)
Q Consensus        13 ~~~~~~~~i~~---~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~   89 (304)
                      .+.+|-.+|-|   ...|.++++|+.|..++||..++..++....+|.+.++.++.+.+...+++++.   |..|++|.+
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~---D~vIrvWrl  261 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN---DKVIRVWRL  261 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc---CceEEEEec
Confidence            34566655543   345999999999999999999999999999999999999999999999999998   999999999


Q ss_pred             cCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece---EEEeccc---eeEecCC--CeEEEecC
Q 036585           90 HDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL---LRVQGRP---AAAYDDQ--GLVFGYEK  161 (304)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~---~~~~~~~--~~~~~~~~  161 (304)
                      .++.++..+.+|++.|++++|+|-.    +.+.||++++||.+-......   .......   .+.+..+  ....+..+
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD  337 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence            9999999999999999999999954    778999999999881111111   0000000   1111111  12223333


Q ss_pred             CCeEEEEecC---CCCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEe
Q 036585          162 GPLDIFSVGG---DISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISG  236 (304)
Q Consensus       162 ~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~  236 (304)
                      +....|.+..   +...+.-+.++.+ ..+.+++-.+-.+++|++.+|...+...   +|...+..+.++| +.....++
T Consensus       338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~---ghsd~~yvLd~Hpfn~ri~msa  414 (1113)
T KOG0644|consen  338 GEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM---GHSDEVYVLDVHPFNPRIAMSA  414 (1113)
T ss_pred             cccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc---ccccceeeeeecCCCcHhhhhc
Confidence            3333333221   1111111111111 1345555567789999999998888877   7889999999999 55566788


Q ss_pred             cCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCceEEecc
Q 036585          237 SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIP  287 (304)
Q Consensus       237 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~  287 (304)
                      +.||...|||+-.+.+++.+....+.+..-+||+||..++....-..++.+
T Consensus       415 g~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  415 GYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             cCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence            999999999999888877664334567777999999887765444445444

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.88  E-value=3.6e-19  Score=142.38  Aligned_cols=256  Identities=11%  Similarity=0.176  Sum_probs=170.1

Q ss_pred             EEEeeCCCeEEEEecCC-cc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC-cee--eeecccccc
Q 036585           30 LVTASDDESIRLYDVTA-AT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKY--SRYFKGHHD  103 (304)
Q Consensus        30 l~~~~~d~~i~vw~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~-~~~--~~~~~~~~~  103 (304)
                      +++...++.|++|++.+ ++  .+..+. +.+....++++|++++|++++..  ++.|.+|++.. ++.  +.... ..+
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~--~~~i~~~~~~~~g~l~~~~~~~-~~~   80 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRP--EFRVLSYRIADDGALTFAAESP-LPG   80 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECC--CCcEEEEEECCCCceEEeeeec-CCC
Confidence            34446789999999964 33  445454 23567789999999999887653  88999999973 332  22222 233


Q ss_pred             cEEEEEEcCCCCEEEEccc-CCeEEEEeCCcce-eeceEE---E-eccceeEecCCCeEE---EecCCCeEEEEecCC--
Q 036585          104 RVVLLSLCSSKDCFISGSL-DRTVLLWDQRAEK-CQGLLR---V-QGRPAAAYDDQGLVF---GYEKGPLDIFSVGGD--  172 (304)
Q Consensus       104 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~-~~~~~~---~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--  172 (304)
                      ....+.++|+++++++++. ++.|.+|++++.. ......   . .....+.+++++..+   ....+.+.+|++...  
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence            5678999999998887764 7899999997432 111111   1 123345678876333   345577888887542  


Q ss_pred             -------------CCCceEEEEecCCcEEEEeeC-CCeEEEEEcCC--Cce--eEEEEeCCC---CCCcceEEEEcCCCc
Q 036585          173 -------------ISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFR--GTL--LSTYNVKPV---SRNSTLEASFSPEGM  231 (304)
Q Consensus       173 -------------~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~--~~~--~~~~~~~~~---~~~~i~~~~~s~~~~  231 (304)
                                   ......++|+|+|++++++.. ++.|.+|++..  ++.  ...+...+.   .......+.|+|+++
T Consensus       161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~  240 (330)
T PRK11028        161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR  240 (330)
T ss_pred             ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence                         112357899999999988876 89999999973  332  333321111   112234688999999


Q ss_pred             EEEEecC-CCcEEEEecCCCceeeeeecc---CCCCceEEeCCCCcEEEEecCc---eEEeccCC
Q 036585          232 FVISGSG-DGSVHAWSVRSGKEVASWMSF---DTEPPVIKWAPGSLMFVTGSSE---LSFWIPDL  289 (304)
Q Consensus       232 ~l~~~~~-dg~i~v~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~  289 (304)
                      +++++.. ++.|.+|++........+.++   ......+.|+|+|++|+++...   +.+|.++.
T Consensus       241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            9999864 688999999653321222222   2356789999999999987753   99998753

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=4.8e-21  Score=154.19  Aligned_cols=230  Identities=18%  Similarity=0.299  Sum_probs=178.6

Q ss_pred             ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec
Q 036585           59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  138 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  138 (304)
                      .|+.++|.|||..|+.+.    +..+.+||.+.|..++++++|.+.|++++|+.||+.+++|+.|..|.+|...-....+
T Consensus        14 ci~d~afkPDGsqL~lAA----g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA----GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK   89 (1081)
T ss_pred             chheeEECCCCceEEEec----CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence            789999999999999988    7899999999999999999999999999999999999999999999999865443333


Q ss_pred             eEEEeccceeEecCCCe-EEEecCCCeEEEEec-------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEE
Q 036585          139 LLRVQGRPAAAYDDQGL-VFGYEKGPLDIFSVG-------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST  210 (304)
Q Consensus       139 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  210 (304)
                      --......++.++|-.. +....-....+|...       .....+.+.+|..||++++.|-.+|+|.+-+ .+++....
T Consensus        90 YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~  168 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVK  168 (1081)
T ss_pred             eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceE
Confidence            32223333455555332 222333334444332       1235788899999999999999999999987 56777777


Q ss_pred             EEeCCCCCCcceEEEEcCCC-----cEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eE
Q 036585          211 YNVKPVSRNSTLEASFSPEG-----MFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LS  283 (304)
Q Consensus       211 ~~~~~~~~~~i~~~~~s~~~-----~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~  283 (304)
                      +..+.+.+.+|.+++|+|..     ..+++.....++.+|.+ +|+.+..-+.-.-...|+.+-|+|.++..|+.|  ++
T Consensus       169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~  247 (1081)
T KOG1538|consen  169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLS  247 (1081)
T ss_pred             EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCceE
Confidence            77766788999999999953     46888888888999887 466665545555667899999999999999988  88


Q ss_pred             EeccCCccccc
Q 036585          284 FWIPDLSKLGA  294 (304)
Q Consensus       284 iw~~~~~~~~~  294 (304)
                      +|.-+.-.+.+
T Consensus       248 ~fTR~GvrLGT  258 (1081)
T KOG1538|consen  248 LFTRDGVRLGT  258 (1081)
T ss_pred             EEeecCeEEee
Confidence            88766554443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.88  E-value=1.2e-20  Score=137.20  Aligned_cols=232  Identities=14%  Similarity=0.196  Sum_probs=171.7

Q ss_pred             CcEEEEeeC----CCeEEEEecC--Ccceeeee-cccccceeEEEEccCCC-----eEEEEecCCCCCceEEEEccCcee
Q 036585           27 GIYLVTASD----DESIRLYDVT--AATCLKTI-NSKKYGVDLVCFTSHPT-----TVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        27 ~~~l~~~~~----d~~i~vw~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~-----~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      ..+||.|+.    .+.|.|-.+.  +++.+..- ..|..+++.+.|.|+..     .|++.     +..+++|.+...+.
T Consensus        59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-----~D~LRlWri~~ee~  133 (364)
T KOG0290|consen   59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-----SDFLRLWRIGDEES  133 (364)
T ss_pred             ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-----cCeEEEEeccCcCC
Confidence            457888873    3456665443  44444322 25788999999999874     44444     45999999874221


Q ss_pred             ----eee-----cccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585           95 ----SRY-----FKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL  164 (304)
Q Consensus        95 ----~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (304)
                          ...     -..+..+++++.|+. +.+++.+++-|-+..|||++++..- ..+.+                     
T Consensus       134 ~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~-~vkTQ---------------------  191 (364)
T KOG0290|consen  134 RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG-TVKTQ---------------------  191 (364)
T ss_pred             ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc-ceeeE---------------------
Confidence                111     124567999999997 7789999999999999999987320 01100                     


Q ss_pred             EEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCC-Cc
Q 036585          165 DIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGD-GS  241 (304)
Q Consensus       165 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d-g~  241 (304)
                          +-.|...|..++|...+ +.|++.+.||.+++||++..+....+...+....+...++|++ |-+++|+-..| ..
T Consensus       192 ----LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~  267 (364)
T KOG0290|consen  192 ----LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNK  267 (364)
T ss_pred             ----EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCce
Confidence                11477899999999865 5788899999999999998877666654444467889999998 55678876655 46


Q ss_pred             EEEEecCC-CceeeeeeccCCCCceEEeCCCC-cEEEEecCc--eEEeccCC
Q 036585          242 VHAWSVRS-GKEVASWMSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       242 i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~~~  289 (304)
                      |.|.|++. ..++.++.+|.+.|+.++|.|.. ..++++++|  ..||+++.
T Consensus       268 V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  268 VVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             EEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            99999986 45688999999999999999964 689999999  88998854

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.88  E-value=2.3e-20  Score=153.60  Aligned_cols=225  Identities=16%  Similarity=0.148  Sum_probs=151.4

Q ss_pred             CCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee--eeecccccccEEEEEEcCC
Q 036585           36 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--SRYFKGHHDRVVLLSLCSS  113 (304)
Q Consensus        36 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~  113 (304)
                      +..|.+||..... .+.+..|...+...+|+|+++.|++++....+..|++||+.+++.  +..+.+|   ...++|+||
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence            3689999986544 556677777899999999999999887532245799999988753  3333333   346899999


Q ss_pred             CCEEEEcc-cCCeEEEE--eCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEE
Q 036585          114 KDCFISGS-LDRTVLLW--DQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLL  190 (304)
Q Consensus       114 ~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (304)
                      |+.|+.+. .+|.+.||  |+.++.... +                             ..+...+....|+|||+.|+.
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~-l-----------------------------t~~~~~~~~~~wSpDG~~i~f  308 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTPSQ-L-----------------------------TSGAGNNTEPSWSPDGQSILF  308 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCeEe-e-----------------------------ccCCCCcCCEEECCCCCEEEE
Confidence            99888764 67765555  555443221 1                             123345677999999998776


Q ss_pred             ee-CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeC
Q 036585          191 TT-MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWA  269 (304)
Q Consensus       191 ~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  269 (304)
                      .+ .+|...+|++..........   .+..  ....|+|||++|+..+.++ +.+||+.+++.......+  ....+.|+
T Consensus       309 ~s~~~g~~~I~~~~~~~~~~~~l---~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~s  380 (429)
T PRK01742        309 TSDRSGSPQVYRMSASGGGASLV---GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSIS  380 (429)
T ss_pred             EECCCCCceEEEEECCCCCeEEe---cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceEC
Confidence            55 57778888765322211222   1222  3578999999998887765 666999888754322222  34678899


Q ss_pred             CCCcEEEEecCc--eEEec---cCCccccccccCCCCC
Q 036585          270 PGSLMFVTGSSE--LSFWI---PDLSKLGAYVGRNRGC  302 (304)
Q Consensus       270 ~~~~~l~s~~~d--~~iw~---~~~~~~~~~~~~~~g~  302 (304)
                      |||++|+.++.+  ..+|.   .+.+..+.+.+++..+
T Consensus       381 PdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~  418 (429)
T PRK01742        381 PNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV  418 (429)
T ss_pred             CCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCC
Confidence            999999998877  55443   4566666676555434

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.88  E-value=1.5e-19  Score=135.62  Aligned_cols=234  Identities=12%  Similarity=0.189  Sum_probs=177.5

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG  100 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~  100 (304)
                      +.+..+...|..|+.|| .++|+.+..............|.-+-|  ...+++..+... -+.+++++...+..+..+. 
T Consensus        11 ~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLF--SSSLvaiV~~~q-pr~Lkv~~~Kk~~~ICe~~-   85 (391)
T KOG2110|consen   11 IGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLF--SSSLVAIVSIKQ-PRKLKVVHFKKKTTICEIF-   85 (391)
T ss_pred             eeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeec--ccceeEEEecCC-CceEEEEEcccCceEEEEe-
Confidence            34777888999999998 788887755443222222334545555  456677666521 4679999998888777766 


Q ss_pred             ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEE
Q 036585          101 HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVK  180 (304)
Q Consensus       101 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  180 (304)
                      ...+|.++.++.  +.|+++-.+. |+|||+++.+.+..+....                          .+...+.++.
T Consensus        86 fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~--------------------------~n~~gl~AlS  136 (391)
T KOG2110|consen   86 FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTP--------------------------PNPKGLCALS  136 (391)
T ss_pred             cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccC--------------------------CCccceEeec
Confidence            567899999864  4566665544 9999999999887775331                          1334566666


Q ss_pred             EecCCcEEEEe--eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCc-EEEEecCCCceeeeee
Q 036585          181 FSNDGRLMLLT--TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS-VHAWSVRSGKEVASWM  257 (304)
Q Consensus       181 ~~~~~~~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~  257 (304)
                      +++.+.+++.-  ...|.|.+||+.+-+....+.   .|++++-+++|+++|.+||++++.|+ |||+.+.+|+.+.+++
T Consensus       137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~---aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR  213 (391)
T KOG2110|consen  137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN---AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR  213 (391)
T ss_pred             cCCCCceEEecCCCCCceEEEEEcccceeeeEEE---ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence            77777788863  347899999999999999998   79999999999999999999999997 7999999999999885


Q ss_pred             cc--CCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          258 SF--DTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       258 ~~--~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      ..  ...|.+++|+|++++|++.+..  |.|+.++...
T Consensus       214 RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  214 RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            33  3468899999999999887776  8888776544

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=4.2e-19  Score=147.22  Aligned_cols=238  Identities=26%  Similarity=0.474  Sum_probs=188.5

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcc-eeeeecccc-cceeEEEE-ccCCCeEEEE-ecCCCCCceEEEEccC-ce
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAAT-CLKTINSKK-YGVDLVCF-TSHPTTVIYS-SKNGWDESLRLLSLHD-NK   93 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~-~~v~~~~~-~~~~~~l~~~-~~~~~d~~i~vwd~~~-~~   93 (304)
                      ..+.+.+.+..++.++.|+.+.+|+...+. .+..+..+. ..+..+.+ ++++..++.. +..  |+.+.+|+... ..
T Consensus        69 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~  146 (466)
T COG2319          69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL--DGTVKLWDLSTPGK  146 (466)
T ss_pred             EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCC--CccEEEEEecCCCe
Confidence            345677788999999999999999998876 666676644 36777777 7888733333 322  88999999998 77


Q ss_pred             eeeecccccccEEEEEEcCCCCEEEEccc-CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585           94 YSRYFKGHHDRVVLLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD  172 (304)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (304)
                      ....+..|...|..+.|+|++..+++++. |+.+++|++........+.                             +|
T Consensus       147 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~  197 (466)
T COG2319         147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-----------------------------GH  197 (466)
T ss_pred             EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-----------------------------cC
Confidence            78888899999999999999998888885 9999999998854444333                             46


Q ss_pred             CCCceEEEEecCCc-EEEEeeCCCeEEEEEcCCCceeE-EEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585          173 ISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLS-TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG  250 (304)
Q Consensus       173 ~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~  250 (304)
                      ...+.+++|+|++. .+++++.|+.|++||...+.... .+.   .|.... ...|+|++.++++++.|+.+++|+++..
T Consensus       198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (466)
T COG2319         198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS---GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS  273 (466)
T ss_pred             CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC---CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence            78899999999998 55555899999999988777766 344   455543 3389999989999999999999999876


Q ss_pred             ce-eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          251 KE-VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       251 ~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      .. +..+..|...+.++.|+|++..+++++.|  +++|+.....
T Consensus       274 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  317 (466)
T COG2319         274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK  317 (466)
T ss_pred             CcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence            64 44446788999999999988888888888  8999765544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.3e-21  Score=147.54  Aligned_cols=198  Identities=17%  Similarity=0.122  Sum_probs=152.7

Q ss_pred             eEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceE
Q 036585           61 DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL  140 (304)
Q Consensus        61 ~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  140 (304)
                      .+++|+++|..+++++.   ||++|+|+..+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++..+...
T Consensus       148 k~vaf~~~gs~latgg~---dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGT---DGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccc---cceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            68999999999999999   9999999988888888888899999999999999999999999 8999999998555443


Q ss_pred             EEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-----cEEEEeeCCCeEEEEEcCCCceeEE--EEe
Q 036585          141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-----RLMLLTTMEGHIHVLDSFRGTLLST--YNV  213 (304)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~~~d~~~~~~~~~--~~~  213 (304)
                      ...                           ........+.|+.|+     ..++....-+.|+.||+.....-..  ...
T Consensus       224 t~~---------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~  276 (398)
T KOG0771|consen  224 TPF---------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK  276 (398)
T ss_pred             CCc---------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh
Confidence            321                           112334557777766     2233334455677776643322111  111


Q ss_pred             CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee-eccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          214 KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       214 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      .......|.+++.|++|++++.|+.||.|-|++..+.+.+.-. +.|...|+.+.|+||.+++++.+.+  ..+..+..
T Consensus       277 ~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  277 KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            1123458999999999999999999999999999888876655 6799999999999999999998888  66665544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.4e-21  Score=165.48  Aligned_cols=254  Identities=14%  Similarity=0.261  Sum_probs=181.8

Q ss_pred             eeEeecccCc-EEEEe----------eCCCeEEEEecCC--c----ceeeeecccccceeEEEEccCCCe----EEEEec
Q 036585           19 EILQSMEVGI-YLVTA----------SDDESIRLYDVTA--A----TCLKTINSKKYGVDLVCFTSHPTT----VIYSSK   77 (304)
Q Consensus        19 ~~i~~~~~~~-~l~~~----------~~d~~i~vw~~~~--~----~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~   77 (304)
                      ..+.|+|++. ++++|          +.+.++.+|.+..  .    +.+..+.. ....+.++|.+.+..    |+.|..
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s-~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS-SNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccc-cccceeeeecccCCCccceeecccc
Confidence            4567777765 44444          2345566665542  2    23333332 346889999998877    455555


Q ss_pred             CCCCCceEEEEccC---c---eeeeecccccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEe
Q 036585           78 NGWDESLRLLSLHD---N---KYSRYFKGHHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY  150 (304)
Q Consensus        78 ~~~d~~i~vwd~~~---~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  150 (304)
                         ||.|.+||...   +   ..+.+...|++.|..+.|++. +++|++|+.||.|.|||+...+......  .      
T Consensus        89 ---dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--~------  157 (1049)
T KOG0307|consen   89 ---DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--S------  157 (1049)
T ss_pred             ---CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--C------
Confidence               99999999865   2   245667789999999999995 4599999999999999998754433321  0      


Q ss_pred             cCCCeEEEecCCCeEEEEecCCCCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585          151 DDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  229 (304)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~  229 (304)
                                         ....+.|.+++|+.. ...|++++.+|++.|||++..+.+..+.... ....+..++|+|+
T Consensus       158 -------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~-~~~~~S~l~WhP~  217 (1049)
T KOG0307|consen  158 -------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP-GRMHCSVLAWHPD  217 (1049)
T ss_pred             -------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-CccceeeeeeCCC
Confidence                               023467899999875 4567888899999999999988777776322 2345778999997


Q ss_pred             Cc-EEEEecCCC---cEEEEecCCC-ceeeeeeccCCCCceEEeCCCC-cEEEEecCc--eEEeccCCc-cccccccCCC
Q 036585          230 GM-FVISGSGDG---SVHAWSVRSG-KEVASWMSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIPDLS-KLGAYVGRNR  300 (304)
Q Consensus       230 ~~-~l~~~~~dg---~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~~~~-~~~~~~~~~~  300 (304)
                      .. .|++++.|.   .|.+||++.. .+++.+.+|...|.++.|++.+ ++|++++.|  +.+|+.+.. .+..+....+
T Consensus       218 ~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n  297 (1049)
T KOG0307|consen  218 HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN  297 (1049)
T ss_pred             CceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc
Confidence            63 456665443   5999999864 4678889999999999999966 899999999  666766553 3456655556


Q ss_pred             CCCC
Q 036585          301 GCMD  304 (304)
Q Consensus       301 g~~d  304 (304)
                      .|+|
T Consensus       298 W~fd  301 (1049)
T KOG0307|consen  298 WCFD  301 (1049)
T ss_pred             ceee
Confidence            6654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.87  E-value=4.7e-20  Score=139.46  Aligned_cols=225  Identities=12%  Similarity=0.146  Sum_probs=165.8

Q ss_pred             eeecceee---Eeeccc-CcEEEEeeCCCeEEEEecCCc-------ceeeeecccccceeEEEEccCCC-eEEEEecCCC
Q 036585           13 SLELSEEI---LQSMEV-GIYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGW   80 (304)
Q Consensus        13 ~~~~~~~~---i~~~~~-~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~   80 (304)
                      .+.+|...   +.|.|. ...||+||.|.+|.||.+..+       +++..|.+|...|-.++|+|... .|++++.   
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~---  152 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS---  152 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC---
Confidence            34455554   456665 578999999999999998754       45677889999999999999754 5666666   


Q ss_pred             CCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585           81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE  160 (304)
Q Consensus        81 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (304)
                      |.+|.+|++.+++.+.++. |.+.|+++.|+.+|.+|++.+.|..|+|||.++++.+..-..+.                
T Consensus       153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he----------------  215 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE----------------  215 (472)
T ss_pred             CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc----------------
Confidence            9999999999999888888 99999999999999999999999999999999998876653221                


Q ss_pred             CCCeEEEEecCCCCCceEEEEecCCcEEEEee---CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec
Q 036585          161 KGPLDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                                  ...-..+.|-.+|..+-+|.   .+..+-+||..+-+.-..+... ...+.|.---|.||.+.++.++
T Consensus       216 ------------G~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-DtSnGvl~PFyD~dt~ivYl~G  282 (472)
T KOG0303|consen  216 ------------GAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-DTSNGVLLPFYDPDTSIVYLCG  282 (472)
T ss_pred             ------------CCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEe-ccCCceEEeeecCCCCEEEEEe
Confidence                        12334466777888555543   3678999997654433333222 2456676677899988877554


Q ss_pred             -CCCcEEEEecCCCce----eeeeeccCCCCceEEeCCC
Q 036585          238 -GDGSVHAWSVRSGKE----VASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       238 -~dg~i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~  271 (304)
                       .|+.||-|.+.+..+    +.++. ...+-..+.|-|-
T Consensus       283 KGD~~IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPK  320 (472)
T KOG0303|consen  283 KGDSSIRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPK  320 (472)
T ss_pred             cCCcceEEEEecCCCceeEEecccc-cCCcccccccccc
Confidence             799999999977654    22222 2334456666664

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1e-19  Score=153.27  Aligned_cols=269  Identities=13%  Similarity=0.186  Sum_probs=194.8

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccc---cceeEEEEcc--CCCeEEEEecCCCCCceEEEEccC-
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKK---YGVDLVCFTS--HPTTVIYSSKNGWDESLRLLSLHD-   91 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~---~~v~~~~~~~--~~~~l~~~~~~~~d~~i~vwd~~~-   91 (304)
                      +..+.++|....++++...-.|+|||.+.++.+..+..+.   ..|+.+.+-.  |...+++++.   ||.|+||+--. 
T Consensus      1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~---dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASS---DGVIRIWKDYAD 1143 (1387)
T ss_pred             CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeecc---CceEEEeccccc
Confidence            5678899999999999877789999999999888777543   5688888865  4567888988   99999996432 


Q ss_pred             ----ceeeeecccc-------cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccce-eEec-----CCC
Q 036585           92 ----NKYSRYFKGH-------HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYD-----DQG  154 (304)
Q Consensus        92 ----~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~-----~~~  154 (304)
                          .+.+..+.+-       .+.=.-++|.+...+|++++.-..|+|||.........+....... .+.+     .+-
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence                2233222211       1111446788766677777778999999999887776665543332 1222     234


Q ss_pred             eEEEecCCCeEEEEecC------------CCCC--ceEEEEecCCc-EEEEeeCCCeEEEEEcCCCceeEEEEeC--CCC
Q 036585          155 LVFGYEKGPLDIFSVGG------------DISD--ANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVK--PVS  217 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~~------------~~~~--v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~  217 (304)
                      .+.++.+|.+++|+..-            |...  |..+.+.+.|- .|++|+.+|.|++||++.......+...  ...
T Consensus      1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred             EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence            66799999999998652            4444  88888888664 4999999999999999985332222211  112


Q ss_pred             CCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec-------cCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          218 RNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS-------FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       218 ~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      .+..+++..++....+|+|+. +.|+||++. |+.+..++.       ..+.+.|++|+|...++|+|+.|  +.||..+
T Consensus      1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             CccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence            335999999999999999998 899999985 444333322       23567999999999999999988  8999776


Q ss_pred             Ccc
Q 036585          289 LSK  291 (304)
Q Consensus       289 ~~~  291 (304)
                      ...
T Consensus      1382 k~~ 1384 (1387)
T KOG1517|consen 1382 KPR 1384 (1387)
T ss_pred             CcC
Confidence            544

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=1.8e-20  Score=136.24  Aligned_cols=231  Identities=12%  Similarity=0.160  Sum_probs=167.4

Q ss_pred             EEEEee----CCCeEEEEecCCcc--e-eeeecccccceeEEEEccCCCeEEEEecC-CCC----CceEEEEccCc----
Q 036585           29 YLVTAS----DDESIRLYDVTAAT--C-LKTINSKKYGVDLVCFTSHPTTVIYSSKN-GWD----ESLRLLSLHDN----   92 (304)
Q Consensus        29 ~l~~~~----~d~~i~vw~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~d----~~i~vwd~~~~----   92 (304)
                      .+++|.    .|+.|.+.+++...  + ...+..|.+.|..++-+|-...+++...+ ..|    ..+.||.+...    
T Consensus        28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S  107 (370)
T KOG1007|consen   28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS  107 (370)
T ss_pred             EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence            445554    46778877766432  2 24456677899999999977666555432 001    35789988643    


Q ss_pred             -----eeeeecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee-ceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           93 -----KYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-GLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        93 -----~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                           +++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++.....+ ..+......                   
T Consensus       108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~-------------------  167 (370)
T KOG1007|consen  108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA-------------------  167 (370)
T ss_pred             ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccc-------------------
Confidence                 2233343 4556899999999999888876 789999999877652 222211110                   


Q ss_pred             EEEecCCCCCceEEEEec--CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc-EEEEecCCCcE
Q 036585          166 IFSVGGDISDANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGSGDGSV  242 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i  242 (304)
                           .+....++-+|+|  +|..+++ ..|+++..||+++.+....+..  .|...+..+.|+|+.+ +|++++.||.|
T Consensus       168 -----e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyv  239 (370)
T KOG1007|consen  168 -----EMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIED--AHGQRVRDLDFNPNKQHILVTCGDDGYV  239 (370)
T ss_pred             -----cccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhh--hhcceeeeccCCCCceEEEEEcCCCccE
Confidence                 2345567788998  6665555 4678999999998887776654  6888899999999876 47889999999


Q ss_pred             EEEecCCC-ceeeeeeccCCCCceEEeCCC-CcEEEEecCc--eEEecc
Q 036585          243 HAWSVRSG-KEVASWMSFDTEPPVIKWAPG-SLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       243 ~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d--~~iw~~  287 (304)
                      +|||.+.. .++.++.+|...|+++.|+|. .+++.+++.|  +.+|..
T Consensus       240 riWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  240 RIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             EEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence            99999864 568899999999999999995 4677888888  777754

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.9e-19  Score=136.41  Aligned_cols=265  Identities=13%  Similarity=0.175  Sum_probs=194.0

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCC------cceeeeecc-cccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTA------ATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   90 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~   90 (304)
                      ..++.|+.++++|++|+.|..+++|+++.      .+++..... |...|.|++|......+++|..   +++|.+-|++
T Consensus        59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~---~~~VI~HDiE  135 (609)
T KOG4227|consen   59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER---WGTVIKHDIE  135 (609)
T ss_pred             cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC---cceeEeeecc
Confidence            34577888899999999999999999863      344444333 5578999999999999999998   9999999999


Q ss_pred             Cceeeeeccc--ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce-eeceEEEecc----ceeEecCCC---eEEEec
Q 036585           91 DNKYSRYFKG--HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGR----PAAAYDDQG---LVFGYE  160 (304)
Q Consensus        91 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~~~~~~~~~---~~~~~~  160 (304)
                      +.+.+..+..  ..+.|+.+..+|..+.|++.+.++.|.+||.+..+ ....+.....    ..+.+.|..   .++...
T Consensus       136 t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~  215 (609)
T KOG4227|consen  136 TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSE  215 (609)
T ss_pred             cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccc
Confidence            9988777652  23489999999999999999999999999998776 3333322211    123444433   455666


Q ss_pred             CCCeEEEEecCCCC----------------CceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC-----CCC
Q 036585          161 KGPLDIFSVGGDIS----------------DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-----SRN  219 (304)
Q Consensus       161 ~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~~~  219 (304)
                      .+...+|+......                .-..+.|+|+|..|++--....-.+||+.+.++. .++....     ...
T Consensus       216 ~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~-V~k~D~N~~GY~N~~  294 (609)
T KOG4227|consen  216 TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF-VLKSDHNPNGYCNIK  294 (609)
T ss_pred             cCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce-eEeccCCCCcceeee
Confidence            77888888764322                2246789999998887766666677887664432 2221111     122


Q ss_pred             cceEEEEcCCCcEEEEecCCCcEEEEecCC-----C------------------ceeeeeeccCCCCceEEeCCCCcEEE
Q 036585          220 STLEASFSPEGMFVISGSGDGSVHAWSVRS-----G------------------KEVASWMSFDTEPPVIKWAPGSLMFV  276 (304)
Q Consensus       220 ~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~-----~------------------~~~~~~~~~~~~i~~~~~~~~~~~l~  276 (304)
                      .+.+++|..|- .+++|+.+-.|++|.+..     |                  +.+..+++|..-++.+.|+|...+|+
T Consensus       295 T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~  373 (609)
T KOG4227|consen  295 TIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLV  373 (609)
T ss_pred             eeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEe
Confidence            46677887554 499999999999998742     1                  12345689999999999999999988


Q ss_pred             EecCc--eEEecc
Q 036585          277 TGSSE--LSFWIP  287 (304)
Q Consensus       277 s~~~d--~~iw~~  287 (304)
                      +.+-.  ++||..
T Consensus       374 SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  374 SSGVENSFKLWSD  386 (609)
T ss_pred             ccchhhheecccc
Confidence            88876  999964

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=2.6e-20  Score=140.87  Aligned_cols=205  Identities=16%  Similarity=0.223  Sum_probs=158.6

Q ss_pred             eeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEccCc-------eeeeecccccccEEEEEEcCC-CCEEEEcc
Q 036585           51 KTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDN-------KYSRYFKGHHDRVVLLSLCSS-KDCFISGS  121 (304)
Q Consensus        51 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~  121 (304)
                      -.+.+|+++|..++|+|... .+++|+.   |.+|.||.+..+       +++..+.+|+..|--++|+|. .+.|++++
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSe---D~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSE---DTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCC---CceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            34668999999999999655 5666666   999999999754       456778899999999999995 45899999


Q ss_pred             cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEE
Q 036585          122 LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  201 (304)
Q Consensus       122 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  201 (304)
                      .|.+|.+||+.+++....+.                              |...|.++.|+.||.+|++.+.|..|++||
T Consensus       152 ~Dn~v~iWnv~tgeali~l~------------------------------hpd~i~S~sfn~dGs~l~TtckDKkvRv~d  201 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLD------------------------------HPDMVYSMSFNRDGSLLCTTCKDKKVRVID  201 (472)
T ss_pred             CCceEEEEeccCCceeeecC------------------------------CCCeEEEEEeccCCceeeeecccceeEEEc
Confidence            99999999999998765543                              678899999999999999999999999999


Q ss_pred             cCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec---CCCcEEEEecCCCce---eeeeeccCCCCceEEeCCCCcEE
Q 036585          202 SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVHAWSVRSGKE---VASWMSFDTEPPVIKWAPGSLMF  275 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l  275 (304)
                      .++++.+..-..+.+  ..-..+.|-.++..+-+|-   .+..+-+||..+.+.   ..++. ....|.---|.||.+++
T Consensus       202 pr~~~~v~e~~~heG--~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~iv  278 (472)
T KOG0303|consen  202 PRRGTVVSEGVAHEG--AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIV  278 (472)
T ss_pred             CCCCcEeeecccccC--CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEE
Confidence            999999888753222  2334566777888555552   577899999877554   23333 23334444578888888


Q ss_pred             EEecCc---eEEeccCCcc
Q 036585          276 VTGSSE---LSFWIPDLSK  291 (304)
Q Consensus       276 ~s~~~d---~~iw~~~~~~  291 (304)
                      +.++..   ||-|.+..+.
T Consensus       279 Yl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  279 YLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             EEEecCCcceEEEEecCCC
Confidence            776655   8888876655

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.86  E-value=2e-18  Score=143.23  Aligned_cols=234  Identities=26%  Similarity=0.461  Sum_probs=183.8

Q ss_pred             cccCc-EEEEeeC-CCeEEEEecCC-cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc
Q 036585           24 MEVGI-YLVTASD-DESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG  100 (304)
Q Consensus        24 ~~~~~-~l~~~~~-d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~  100 (304)
                      .+++. +++..+. |+.+++|+... ......+..|...|..++|+|++..++.++.  .|+.+++|++..+..+..+.+
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  196 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS--LDGTIKLWDLRTGKPLSTLAG  196 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC--CCCceEEEEcCCCceEEeecc
Confidence            66666 5555444 99999999988 7888889999999999999999998887763  299999999999888888988


Q ss_pred             ccccEEEEEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585          101 HHDRVVLLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV  179 (304)
Q Consensus       101 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  179 (304)
                      |...|.+++|+|++. .+++++.|+.+++||...+.....                            .+..|.... ..
T Consensus       197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~----------------------------~~~~~~~~~-~~  247 (466)
T COG2319         197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS----------------------------TLSGHSDSV-VS  247 (466)
T ss_pred             CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee----------------------------ecCCCCcce-eE
Confidence            999999999999998 555559999999998774444331                            112343443 23


Q ss_pred             EEecCCcEEEEeeCCCeEEEEEcCCCce-eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee-
Q 036585          180 KFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM-  257 (304)
Q Consensus       180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-  257 (304)
                      .|+|++..+++++.++.+++|+++.... ...+   ..|...+.++.|+|++..+++++.|+.+.+||..+........ 
T Consensus       248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  324 (466)
T COG2319         248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL  324 (466)
T ss_pred             eECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeee
Confidence            8999998889999999999999987665 4444   2578899999999988888888888889999998887766665 


Q ss_pred             -ccCCCCceEEeCCCCcEEEEe-cCc--eEEeccCCcc
Q 036585          258 -SFDTEPPVIKWAPGSLMFVTG-SSE--LSFWIPDLSK  291 (304)
Q Consensus       258 -~~~~~i~~~~~~~~~~~l~s~-~~d--~~iw~~~~~~  291 (304)
                       .|...+..+.|.+++..++.+ ..|  +.+|+.....
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             cccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence             788889999994342455555 455  7778776554

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.86  E-value=1.5e-21  Score=150.29  Aligned_cols=232  Identities=14%  Similarity=0.155  Sum_probs=194.0

Q ss_pred             ecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           15 ELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        15 ~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      ++.+--+....+|++|+.|+..|.|-.+|..++++...+.... .|..+.|-.+..+++++-    ...++|||-. |..
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-tv~Dv~~LHneq~~AVAQ----K~y~yvYD~~-GtE  202 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-TVRDVTFLHNEQFFAVAQ----KKYVYVYDNN-GTE  202 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh-hhhhhhhhcchHHHHhhh----hceEEEecCC-CcE
Confidence            3444556778889999999999999999999999988887544 799999998888888886    7899999954 566


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS  174 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (304)
                      ++.++.| ..|..+.|.|.--+|++++..|.++.-|+.+++.+..+...                             .+
T Consensus       203 lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-----------------------------~G  252 (545)
T KOG1272|consen  203 LHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-----------------------------AG  252 (545)
T ss_pred             Eeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-----------------------------CC
Confidence            6777755 56899999999889999999999999999999988777532                             34


Q ss_pred             CceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585          175 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA  254 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~  254 (304)
                      .+..++-+|-+..+-+|..+|+|.+|.....+++..+.   .|.++|.++++.++|+|++|++.|..++|||+++...+.
T Consensus       253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL---cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~  329 (545)
T KOG1272|consen  253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL---CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH  329 (545)
T ss_pred             ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH---hcCCCcceEEECCCCcEEeecccccceeEeeeccccccc
Confidence            66778888988899999999999999999988888777   699999999999999999999999999999999988776


Q ss_pred             eeeccCCCCceEEeCCCCcEEEEecCceEEec
Q 036585          255 SWMSFDTEPPVIKWAPGSLMFVTGSSELSFWI  286 (304)
Q Consensus       255 ~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~  286 (304)
                      ++.. ..+...+++|..|.+.++-+..+.||.
T Consensus       330 t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  330 TYRT-PHPASNLSLSQKGLLALSYGDHVQIWK  360 (545)
T ss_pred             eeec-CCCccccccccccceeeecCCeeeeeh
Confidence            6654 456788888877654444444499995

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=3.4e-19  Score=143.77  Aligned_cols=257  Identities=16%  Similarity=0.220  Sum_probs=177.0

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCC---eEEEEecCCCCCceEEEEccCc--eeeeeccc
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLLSLHDN--KYSRYFKG  100 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~~~d~~i~vwd~~~~--~~~~~~~~  100 (304)
                      .+..++.|. ...|.+||..+......+.+|..+|+|+.|-|..+   .+++|+.   |+.|.+|.++..  ..+..+++
T Consensus        24 ~~~~vafGa-~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~s---D~~v~lW~l~~~~~~~i~~~~g   99 (764)
T KOG1063|consen   24 PGGLVAFGA-GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDS---DGRVILWKLRDEYLIKIYTIQG   99 (764)
T ss_pred             ccceEEecC-CceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccC---CCcEEEEEEeehheEEEEeecC
Confidence            344555554 46899999988878899999999999999999887   7999998   999999999843  34556666


Q ss_pred             ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce--eeceEEEec---------------cceeEecCCCeEE---Ee-
Q 036585          101 HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK--CQGLLRVQG---------------RPAAAYDDQGLVF---GY-  159 (304)
Q Consensus       101 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~---------------~~~~~~~~~~~~~---~~-  159 (304)
                      |...+.|+  +.......+...|+.+.+||.+..+  +...+....               ....+.......+   +. 
T Consensus       100 ~~~~~~cv--~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~  177 (764)
T KOG1063|consen  100 HCKECVCV--VARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSS  177 (764)
T ss_pred             cceeEEEE--EeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccC
Confidence            66655554  4333333334789999999985544  222222211               1112222221111   11 


Q ss_pred             cCCCeEEEEecCCCCCceEEEEecCC---cEEEEeeCCCeEEEEEcCCCc---------------------eeEEEE---
Q 036585          160 EKGPLDIFSVGGDISDANVVKFSNDG---RLMLLTTMEGHIHVLDSFRGT---------------------LLSTYN---  212 (304)
Q Consensus       160 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~---------------------~~~~~~---  212 (304)
                      .+.-..+..+.+|..-|.+++|...+   -+|+++++|..|++|.+.-+.                     ....+.   
T Consensus       178 ~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~i  257 (764)
T KOG1063|consen  178 ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRI  257 (764)
T ss_pred             CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEE
Confidence            12224556788999999999997754   478899999999999864222                     111111   


Q ss_pred             ----eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc-------------------------------------
Q 036585          213 ----VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK-------------------------------------  251 (304)
Q Consensus       213 ----~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~-------------------------------------  251 (304)
                          ...+|...|.++.|+|.+..|++++.|.++.+|...+..                                     
T Consensus       258 s~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~  337 (764)
T KOG1063|consen  258 SFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT  337 (764)
T ss_pred             ehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc
Confidence                123789999999999999999999999999999654321                                     


Q ss_pred             ---------------eeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          252 ---------------EVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       252 ---------------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                                     ....+.+|...|..++|+|.|.+|.+.+.|  -|++-.-
T Consensus       338 Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w  391 (764)
T KOG1063|consen  338 GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW  391 (764)
T ss_pred             CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence                           011124777888999999999999999988  6666443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.86  E-value=1.4e-18  Score=142.71  Aligned_cols=227  Identities=11%  Similarity=0.095  Sum_probs=152.9

Q ss_pred             eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585           38 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF  117 (304)
Q Consensus        38 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  117 (304)
                      .|.++|...... +.+..+...+...+|+|||+.|+..+....+..|.+|++.+++.... ....+.+..+.|+|||+.|
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEE
Confidence            688999875443 33444566899999999999999876432256899999988754332 2233344568999999988


Q ss_pred             EEc-ccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC
Q 036585          118 ISG-SLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME  194 (304)
Q Consensus       118 ~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  194 (304)
                      +.. +.+|  .|++||+++++.....                              .+...+....|+|||+.|+..+.+
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~lt------------------------------~~~~~~~~~~wSPDG~~I~f~s~~  307 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQVT------------------------------DGRSNNTEPTWFPDSQNLAYTSDQ  307 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEcc------------------------------CCCCCcCceEECCCCCEEEEEeCC
Confidence            754 4344  5888998876543221                              122345678999999988877654


Q ss_pred             -C--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEecCCCceeeeeeccCCCCceEEe
Q 036585          195 -G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSVRSGKEVASWMSFDTEPPVIKW  268 (304)
Q Consensus       195 -g--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~  268 (304)
                       +  .|+++|+.+++.. .+.   ..........|+|||++|+..+.+   ..|.+||+.+++.. .+.. ........|
T Consensus       308 ~g~~~Iy~~d~~~g~~~-~lt---~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~  381 (429)
T PRK03629        308 AGRPQVYKVNINGGAPQ-RIT---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSI  381 (429)
T ss_pred             CCCceEEEEECCCCCeE-Eee---cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceE
Confidence             3  4566677666543 333   233345578999999998876543   35889999887643 3332 223456789


Q ss_pred             CCCCcEEEEecCc-----eEEeccCCccccccccCCCCC
Q 036585          269 APGSLMFVTGSSE-----LSFWIPDLSKLGAYVGRNRGC  302 (304)
Q Consensus       269 ~~~~~~l~s~~~d-----~~iw~~~~~~~~~~~~~~~g~  302 (304)
                      +|||++|+.++.+     +.+++.+.+....+.++...+
T Consensus       382 SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~  420 (429)
T PRK03629        382 APNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQV  420 (429)
T ss_pred             CCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCc
Confidence            9999999988876     456677777777776654433

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=5.5e-20  Score=146.06  Aligned_cols=243  Identities=11%  Similarity=0.108  Sum_probs=176.2

Q ss_pred             eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCC--EEEEcccCCeEE
Q 036585           50 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKD--CFISGSLDRTVL  127 (304)
Q Consensus        50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~  127 (304)
                      -..+.+|++.|.++...|.|..|++|+.   ||+|+||.+.++.+++.+. ..+.|.|++|+|.+.  .|+++- +..+.
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsd---DGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~  467 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSD---DGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVL  467 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCC---CCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceE
Confidence            3457899999999999999999999999   9999999999999999887 567899999999765  344443 44477


Q ss_pred             EEeCCcceeeceEEEeccce---eEecCCCeEEEecC-----CCeEEEEecCCCCCceEEEEecCCcEEEEeeCC---Ce
Q 036585          128 LWDQRAEKCQGLLRVQGRPA---AAYDDQGLVFGYEK-----GPLDIFSVGGDISDANVVKFSNDGRLMLLTTME---GH  196 (304)
Q Consensus       128 iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~  196 (304)
                      |.+..-+..+..........   ..-.++..++.+..     ....+...-.|...|+.+.|+..|.||++..-+   ..
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS  547 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence            76655442222111100000   00111112221111     111122223477899999999999999987654   46


Q ss_pred             EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEE
Q 036585          197 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFV  276 (304)
Q Consensus       197 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  276 (304)
                      |.|.++........|.   ...+.+.++.|+|...+|++++ ...|+|||+...+.++.+......|..++.+|.|..|+
T Consensus       548 VliHQLSK~~sQ~PF~---kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli  623 (733)
T KOG0650|consen  548 VLIHQLSKRKSQSPFR---KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI  623 (733)
T ss_pred             EEEEecccccccCchh---hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence            8999998777666665   4678899999999999999886 45799999998888888887888999999999999999


Q ss_pred             EecCc--eEEeccCCc--cccccccCCCC
Q 036585          277 TGSSE--LSFWIPDLS--KLGAYVGRNRG  301 (304)
Q Consensus       277 s~~~d--~~iw~~~~~--~~~~~~~~~~g  301 (304)
                      .++.|  +..+|+++.  ..++++-|++.
T Consensus       624 ~gs~d~k~~WfDldlsskPyk~lr~H~~a  652 (733)
T KOG0650|consen  624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKA  652 (733)
T ss_pred             EecCCCeeEEEEcccCcchhHHhhhhhhh
Confidence            99999  667788765  44566555543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.85  E-value=2.1e-19  Score=132.47  Aligned_cols=231  Identities=13%  Similarity=0.134  Sum_probs=179.7

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCc---ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc-Cc
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAA---TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DN   92 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~-~~   92 (304)
                      .....++.+|+..+|++.....|.||.....   +..++++.|...|+.++|+|..+.|++++.   |..-+||... .+
T Consensus        12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~---drnayVw~~~~~~   88 (361)
T KOG1523|consen   12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH---DRNAYVWTQPSGG   88 (361)
T ss_pred             ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC---CCCccccccCCCC
Confidence            4445677889999999999999999987654   467889999999999999999999999999   9999999984 33


Q ss_pred             --eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           93 --KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        93 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                        ++...+..+...++++.|+|.++.|++|+....|.+|-++....-..-+.-..                         
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikk-------------------------  143 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKK-------------------------  143 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCC-------------------------
Confidence              34555667899999999999999999999999999998776544322221111                         


Q ss_pred             CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC-----C-------------CceeEEEEeCCCCCCcceEEEEcCCCcE
Q 036585          171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-----R-------------GTLLSTYNVKPVSRNSTLEASFSPEGMF  232 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-----~-------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~  232 (304)
                      ...+.|.++.|+|++-++++|+.|+..++|..-     .             |+++.++.   ...+.+..+.|+|+|+.
T Consensus       144 PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~---~~ggwvh~v~fs~sG~~  220 (361)
T KOG1523|consen  144 PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS---SSGGWVHGVLFSPSGNR  220 (361)
T ss_pred             ccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc---cCCCceeeeEeCCCCCE
Confidence            245788999999999999999999999998741     1             22222332   35678999999999999


Q ss_pred             EEEecCCCcEEEEecCCCc-eeeeeeccCCCCceEEeCCCCcEEEEe
Q 036585          233 VISGSGDGSVHAWSVRSGK-EVASWMSFDTEPPVIKWAPGSLMFVTG  278 (304)
Q Consensus       233 l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~  278 (304)
                      |+-.+.|..+.+-|..... .+.......-+..++.|-.+...++.|
T Consensus       221 lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag  267 (361)
T KOG1523|consen  221 LAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAG  267 (361)
T ss_pred             eeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecC
Confidence            9999999999999986654 344444344777888887665444433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5.2e-20  Score=136.70  Aligned_cols=191  Identities=19%  Similarity=0.245  Sum_probs=148.1

Q ss_pred             CeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcC--CCCEEEEcccCCeEEEEeCCcceeeceEEEeccce
Q 036585           70 TTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA  147 (304)
Q Consensus        70 ~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  147 (304)
                      ..++++.+   .|.|++||..+++.+..++++...+..+.|..  ....+.+++.||+|++||+|.......+.....+ 
T Consensus        41 ~~vav~lS---ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-  116 (376)
T KOG1188|consen   41 TAVAVSLS---NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-  116 (376)
T ss_pred             eeEEEEec---CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence            56777777   99999999999999999999999999999986  5668999999999999999988777666543221 


Q ss_pred             eEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC----CCeEEEEEcCCCce-eEEEEeCCCCCCcce
Q 036585          148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGTL-LSTYNVKPVSRNSTL  222 (304)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~-~~~~~~~~~~~~~i~  222 (304)
                                               ..+..+++.+..++.+++|+.    +-.+.+||++..+. +..+..  .|...|+
T Consensus       117 -------------------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e--SH~DDVT  169 (376)
T KOG1188|consen  117 -------------------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE--SHNDDVT  169 (376)
T ss_pred             -------------------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh--hccCcce
Confidence                                     134566777667788888753    56799999998776 444432  6899999


Q ss_pred             EEEEcC-CCcEEEEecCCCcEEEEecCCCce---eeeeeccCCCCceEEeCCCC--cEEEEecCc-eEEeccCCcc
Q 036585          223 EASFSP-EGMFVISGSGDGSVHAWSVRSGKE---VASWMSFDTEPPVIKWAPGS--LMFVTGSSE-LSFWIPDLSK  291 (304)
Q Consensus       223 ~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~i~~~~~~~~~--~~l~s~~~d-~~iw~~~~~~  291 (304)
                      +++|+| +.++|++|+.||.|.+||++....   +...-.|...|.++.|..++  +.+...... ..+|+++-..
T Consensus       170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            999999 568999999999999999975432   33334578889999999887  533333333 9999886443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.6e-18  Score=142.22  Aligned_cols=272  Identities=13%  Similarity=0.155  Sum_probs=193.9

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCC----cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   93 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~   93 (304)
                      ...++++|.++++|+|..||.|.+|.--.    ....+.+.=|..+|.+++|+++|.+|++|+.   .+.+.+|.+.+++
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~---E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR---EGVLVLWQLETGK  284 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeeccc---ceEEEEEeecCCC
Confidence            35688999999999999999999997432    1234556678889999999999999999998   9999999999988


Q ss_pred             eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEE---e----------ccceeEecC--CCeEEE
Q 036585           94 YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV---Q----------GRPAAAYDD--QGLVFG  158 (304)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~----------~~~~~~~~~--~~~~~~  158 (304)
                       .+-+..-.++|..+.++||+.+.+....|..|.+....+......+..   .          -...++++|  +..++.
T Consensus       285 -kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln  363 (792)
T KOG1963|consen  285 -KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN  363 (792)
T ss_pred             -cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec
Confidence             555666788999999999999999999999999887654433322211   1          011344555  234555


Q ss_pred             ecCCCeEEEEecC--------------------CCCCceEEEEecCCcEEEEee--------CCC--eEEEEEcCCCcee
Q 036585          159 YEKGPLDIFSVGG--------------------DISDANVVKFSNDGRLMLLTT--------MEG--HIHVLDSFRGTLL  208 (304)
Q Consensus       159 ~~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~~~~--------~dg--~i~~~d~~~~~~~  208 (304)
                      ...+.++.|++..                    +...++.++.+..|.++++.-        .||  .+++|-.......
T Consensus       364 ~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt  443 (792)
T KOG1963|consen  364 GHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT  443 (792)
T ss_pred             CCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce
Confidence            5666677766542                    123456677777888888863        233  5778876543332


Q ss_pred             EEEE--eCCCCCCcceEEEEcC-C-CcEEEEecCCCcEEEEecCCCc----------eeeeeeccCCCCceEEeCCCCcE
Q 036585          209 STYN--VKPVSRNSTLEASFSP-E-GMFVISGSGDGSVHAWSVRSGK----------EVASWMSFDTEPPVIKWAPGSLM  274 (304)
Q Consensus       209 ~~~~--~~~~~~~~i~~~~~s~-~-~~~l~~~~~dg~i~v~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~  274 (304)
                      ..+.  ....|+..+...++.+ . ...+++++.||.++||-+.+.+          +...-..|..+++.++|+.||..
T Consensus       444 ~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsl  523 (792)
T KOG1963|consen  444 FILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSL  523 (792)
T ss_pred             eEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcE
Confidence            2222  2224666666666555 2 2378999999999999884322          11111247889999999999999


Q ss_pred             EEEecCc-eEEeccCC-cccc
Q 036585          275 FVTGSSE-LSFWIPDL-SKLG  293 (304)
Q Consensus       275 l~s~~~d-~~iw~~~~-~~~~  293 (304)
                      |+.+-++ +.+|+++. +.+.
T Consensus       524 la~s~~~~Itiwd~~~~~~l~  544 (792)
T KOG1963|consen  524 LAVSFDDTITIWDYDTKNELL  544 (792)
T ss_pred             EEEecCCEEEEecCCChhhhh
Confidence            9999999 99999987 4443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.85  E-value=2.6e-19  Score=147.40  Aligned_cols=210  Identities=14%  Similarity=0.154  Sum_probs=149.0

Q ss_pred             eeEeecccCcEEEEeeCC---CeEEEEecCCcce--eeeecccccceeEEEEccCCCeEEEEecCCCCCceEE--EEccC
Q 036585           19 EILQSMEVGIYLVTASDD---ESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL--LSLHD   91 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d---~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v--wd~~~   91 (304)
                      ....++|+|++|+..+.+   ..|++||+.+++.  +..+.++   ...++|+||++.|+++...  ++.+.|  ||+.+
T Consensus       207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~--~g~~~Iy~~d~~~  281 (429)
T PRK01742        207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSK--DGVLNIYVMGANG  281 (429)
T ss_pred             ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEec--CCcEEEEEEECCC
Confidence            347899999999988754   3699999988754  3334333   3468999999999887632  665555  56666


Q ss_pred             ceeeeecccccccEEEEEEcCCCCEEEEcc-cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           92 NKYSRYFKGHHDRVVLLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      ++. ..+..+...+....|+|||+.++..+ .++...+|++..........                             
T Consensus       282 ~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-----------------------------  331 (429)
T PRK01742        282 GTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-----------------------------  331 (429)
T ss_pred             CCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-----------------------------
Confidence            553 44555667788999999999776554 57788888765322111110                             


Q ss_pred             CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEec--C
Q 036585          171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSV--R  248 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~--~  248 (304)
                      .+..  ....|+|+|++++..+.++ +.+||+.+++......   .  .....+.|+|||++|+.++.++.+.+|++  .
T Consensus       332 ~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~  403 (429)
T PRK01742        332 GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS---T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSA  403 (429)
T ss_pred             cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC---C--CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence            1111  3468999999998887764 5669998887543222   1  12345789999999999998998888876  3


Q ss_pred             CCceeeeeeccCCCCceEEeCCC
Q 036585          249 SGKEVASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       249 ~~~~~~~~~~~~~~i~~~~~~~~  271 (304)
                      +++.+..+..|.+.+...+|+|-
T Consensus       404 ~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        404 DGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCceEEccCCCCCCCCcccCCC
Confidence            67888888888888999999984

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.85  E-value=2.5e-19  Score=132.79  Aligned_cols=265  Identities=13%  Similarity=0.220  Sum_probs=184.7

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      ...++|+|+++|+++.- .+.|-|.++.+..+.+.. -..|..+.|..+.-+++++...  ++.|.+|++...+-...+.
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk--~~~vqvwsl~Qpew~ckId   88 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYK--DPKVQVWSLVQPEWYCKID   88 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeec--cceEEEEEeecceeEEEec
Confidence            56899999999999876 788999888776655543 3478889999999988888775  8899999999999888888


Q ss_pred             cccccEEEEEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEE-eccceeEecCCCeEE--------------------
Q 036585          100 GHHDRVVLLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRV-QGRPAAAYDDQGLVF--------------------  157 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------  157 (304)
                      ....++.++.|+|+|+ .|.+...+-.|.+|.+.+.+....... .+....++++++.+.                    
T Consensus        89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W  168 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW  168 (447)
T ss_pred             cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence            8889999999999996 556677789999999987765433211 112233444444332                    


Q ss_pred             ------------------EecCCCeEEEEe-------cCC-CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEE
Q 036585          158 ------------------GYEKGPLDIFSV-------GGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  211 (304)
Q Consensus       158 ------------------~~~~~~~~~~~~-------~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  211 (304)
                                        .-++.-+.+|+-       .-+ .-.+..++|+|.++++++|+.|+.+++.+--+.+...++
T Consensus       169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef  248 (447)
T KOG4497|consen  169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF  248 (447)
T ss_pred             HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence                              111112222221       111 245778899999999999999999888652221111100


Q ss_pred             ------------------------------------------------------------E---eCCCCCCcceEEEEcC
Q 036585          212 ------------------------------------------------------------N---VKPVSRNSTLEASFSP  228 (304)
Q Consensus       212 ------------------------------------------------------------~---~~~~~~~~i~~~~~s~  228 (304)
                                                                                  +   ..+.....+.-++||+
T Consensus       249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~  328 (447)
T KOG4497|consen  249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC  328 (447)
T ss_pred             ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence                                                                        0   0011223456689999


Q ss_pred             CCcEEEEecCC--CcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          229 EGMFVISGSGD--GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       229 ~~~~l~~~~~d--g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      |..++++-...  +.+-+||+++.+....+. ...+|....|+|....|+.+...  +.+|.+..
T Consensus       329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg  392 (447)
T KOG4497|consen  329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG  392 (447)
T ss_pred             CceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence            99999987533  579999999877655553 55689999999998777766655  56665554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.85  E-value=2.6e-18  Score=129.11  Aligned_cols=194  Identities=17%  Similarity=0.227  Sum_probs=154.4

Q ss_pred             eeEeecccCcEEEEeeCCC--eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           19 EILQSMEVGIYLVTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      .++..+-...++|..+.+.  .+++.+.+.+..+..+.... +|.++.+  +.++|++.-    ...|+|||+.+.+.++
T Consensus        48 ~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt-~IL~Vrm--Nr~RLvV~L----ee~IyIydI~~MklLh  120 (391)
T KOG2110|consen   48 SIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT-SILAVRM--NRKRLVVCL----EESIYIYDIKDMKLLH  120 (391)
T ss_pred             EEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecCC-ceEEEEE--ccceEEEEE----cccEEEEecccceeeh
Confidence            3445555556666666543  48889988888777776544 7888888  566788777    4569999999999888


Q ss_pred             eccc---ccccEEEEEEcCCCCEEEEcc--cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585           97 YFKG---HHDRVVLLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG  171 (304)
Q Consensus        97 ~~~~---~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (304)
                      ++..   +...+.++.+++.+.+++.-+  ..|.|.+||+.+-+....+.                             .
T Consensus       121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-----------------------------a  171 (391)
T KOG2110|consen  121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-----------------------------A  171 (391)
T ss_pred             hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-----------------------------e
Confidence            7763   444567777777777888643  46899999998887776665                             5


Q ss_pred             CCCCceEEEEecCCcEEEEeeCCCe-EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585          172 DISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~  249 (304)
                      |.+.+.+++|+++|.+||+++..|+ ||||.+.+|+.+.+|.... ....|.+++|+|++++|++.+..++|++|.+..
T Consensus       172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            8889999999999999999999997 8999999999999998543 356789999999999999999999999998864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=4.5e-18  Score=121.04  Aligned_cols=231  Identities=13%  Similarity=0.201  Sum_probs=162.9

Q ss_pred             eecceeeEeeccc-CcEEEEeeCCCeEEEEecCCcce------eee--eccc-----ccceeEEEEccCCCeEEEEecCC
Q 036585           14 LELSEEILQSMEV-GIYLVTASDDESIRLYDVTAATC------LKT--INSK-----KYGVDLVCFTSHPTTVIYSSKNG   79 (304)
Q Consensus        14 ~~~~~~~i~~~~~-~~~l~~~~~d~~i~vw~~~~~~~------~~~--~~~~-----~~~v~~~~~~~~~~~l~~~~~~~   79 (304)
                      .+.|+..+..+.. .++|++++ ||.|+=|.......      +-.  ...|     --.|++|...|..+.++.++.  
T Consensus        58 eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG--  134 (325)
T KOG0649|consen   58 EQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG--  134 (325)
T ss_pred             ccccCCCeeeeeeehhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC--
Confidence            3677777776665 44555555 69999998753221      111  1112     236889999998887777776  


Q ss_pred             CCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEe
Q 036585           80 WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGY  159 (304)
Q Consensus        80 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (304)
                       |+.++-||+++|+..+.+++|++.|.++.-......+++|+.||++|+||.++.+.+..+.....+...-         
T Consensus       135 -D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR---------  204 (325)
T KOG0649|consen  135 -DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR---------  204 (325)
T ss_pred             -CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcC---------
Confidence             9999999999999999999999999999987666789999999999999999999988876544332110         


Q ss_pred             cCCCeEEEEecCCC-CCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC
Q 036585          160 EKGPLDIFSVGGDI-SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  238 (304)
Q Consensus       160 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  238 (304)
                                 .|. .-|.+++.  +..+|++|+. ..+.+|.+++.++...+.    -..++..+.|..  +.+++++.
T Consensus       205 -----------p~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfp----ipa~v~~v~F~~--d~vl~~G~  264 (325)
T KOG0649|consen  205 -----------PDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFP----IPARVHLVDFVD--DCVLIGGE  264 (325)
T ss_pred             -----------cccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEe----cccceeEeeeec--ceEEEecc
Confidence                       111 22444444  5667777654 478999999999999988    456777788854  47888888


Q ss_pred             CCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEe
Q 036585          239 DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTG  278 (304)
Q Consensus       239 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  278 (304)
                      .+.|.-|.+ +|......+......++..|+..--.+++.
T Consensus       265 g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~  303 (325)
T KOG0649|consen  265 GNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISI  303 (325)
T ss_pred             ccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEe
Confidence            888999987 455444444444445555565443333333

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.84  E-value=1.8e-19  Score=141.47  Aligned_cols=227  Identities=17%  Similarity=0.289  Sum_probs=158.2

Q ss_pred             cCcEEEEeeCCCeEEEEecCCccee------eeecccccceeEEEE-----ccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCL------KTINSKKYGVDLVCF-----TSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~------~~~~~~~~~v~~~~~-----~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      .|++|+..-. ..+.+|+...+..+      ..+.+.  ...|-+|     .|.+--++.+-.   -|.+++.|....+.
T Consensus       134 ~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g~dllIGf~---tGqvq~idp~~~~~  207 (636)
T KOG2394|consen  134 KGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKGLDLLIGFT---TGQVQLIDPINFEV  207 (636)
T ss_pred             CCCEEEEecC-CeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCCcceEEeec---cCceEEecchhhHH
Confidence            3666665543 35888887743211      112221  2333344     356667888877   88999998876332


Q ss_pred             eeecc----cccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEe--cCCCeEE-----EecCC
Q 036585           95 SRYFK----GHHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY--DDQGLVF-----GYEKG  162 (304)
Q Consensus        95 ~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~  162 (304)
                      .+.+.    -.+..|+|+.|-|. ...++++-.+|.+++||.+......      .+....  .++...+     .....
T Consensus       208 sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t------~p~~~~~k~~~~f~i~t~ksk~~rN  281 (636)
T KOG2394|consen  208 SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT------APSYQALKDGDQFAILTSKSKKTRN  281 (636)
T ss_pred             HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCC------CCcccccCCCCeeEEeeeeccccCC
Confidence            22221    13468999999994 4577777889999999873211110      011111  1111111     11224


Q ss_pred             CeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcE
Q 036585          163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV  242 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  242 (304)
                      ++..|.+..  +.|+.++|+|||++||+.+.||.++|||..+.+++..++   ..-+...|++|||||+||++|++|..|
T Consensus       282 Pv~~w~~~~--g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk---SYFGGLLCvcWSPDGKyIvtGGEDDLV  356 (636)
T KOG2394|consen  282 PVARWHIGE--GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK---SYFGGLLCVCWSPDGKYIVTGGEDDLV  356 (636)
T ss_pred             ccceeEecc--ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH---hhccceEEEEEcCCccEEEecCCcceE
Confidence            555555443  489999999999999999999999999999988877766   466789999999999999999999999


Q ss_pred             EEEecCCCceeeeeeccCCCCceEEeC
Q 036585          243 HAWSVRSGKEVASWMSFDTEPPVIKWA  269 (304)
Q Consensus       243 ~v~d~~~~~~~~~~~~~~~~i~~~~~~  269 (304)
                      .||.+...+.+..-.+|..+|+.++|.
T Consensus       357 tVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  357 TVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EEEEeccceEEEeccccccceeeEeec
Confidence            999999999999999999999999998

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.84  E-value=3.9e-19  Score=129.49  Aligned_cols=231  Identities=14%  Similarity=0.179  Sum_probs=165.3

Q ss_pred             cceeeEeecccC-----cEEEEeeCCCeEEEEecCCc--ce--eeeec-----ccccceeEEEEcc-CCCeEEEEecCCC
Q 036585           16 LSEEILQSMEVG-----IYLVTASDDESIRLYDVTAA--TC--LKTIN-----SKKYGVDLVCFTS-HPTTVIYSSKNGW   80 (304)
Q Consensus        16 ~~~~~i~~~~~~-----~~l~~~~~d~~i~vw~~~~~--~~--~~~~~-----~~~~~v~~~~~~~-~~~~l~~~~~~~~   80 (304)
                      +...-+.|.|+.     ++|||++.  .+|+|.+...  +.  ...+.     .+..++++..|+. +.+++.+.+-   
T Consensus        97 YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi---  171 (364)
T KOG0290|consen   97 YPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI---  171 (364)
T ss_pred             CCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc---
Confidence            344456777773     46776653  6999998732  21  11121     3456899999987 4556666666   


Q ss_pred             CCceEEEEccCcee---eeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeE
Q 036585           81 DESLRLLSLHDNKY---SRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV  156 (304)
Q Consensus        81 d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (304)
                      |-+..|||++++..   ...+-.|..+|..++|...+ +.|++.+.||.+|++|++...-...+-..             
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~-------------  238 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED-------------  238 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC-------------
Confidence            99999999998743   44566899999999999854 48999999999999999876443322111             


Q ss_pred             EEecCCCeEEEEecCCCCCceEEEEecC-CcEEEEeeC-CCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCC-CcE
Q 036585          157 FGYEKGPLDIFSVGGDISDANVVKFSND-GRLMLLTTM-EGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPE-GMF  232 (304)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~-dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~-~~~  232 (304)
                                   .....+...++|+++ -+++++-.. ...|.+.|++.. .++.+++   .|.+.|+.++|.|. ...
T Consensus       239 -------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~---~H~a~VNgIaWaPhS~~h  302 (364)
T KOG0290|consen  239 -------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR---NHQASVNGIAWAPHSSSH  302 (364)
T ss_pred             -------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh---cCcccccceEecCCCCce
Confidence                         112356677888874 466776544 457999999864 4566666   79999999999994 568


Q ss_pred             EEEecCCCcEEEEecCCCc------eeeeeeccCCCCceEEeCC-CCcEEEEecCc
Q 036585          233 VISGSGDGSVHAWSVRSGK------EVASWMSFDTEPPVIKWAP-GSLMFVTGSSE  281 (304)
Q Consensus       233 l~~~~~dg~i~v~d~~~~~------~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d  281 (304)
                      |++++.|..+.+||+...-      ++..+. -.+.|+.+.|+| ...+++.+...
T Consensus       303 ictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  303 ICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             eeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence            9999999999999997532      222233 567899999996 45688877766

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.84  E-value=8.5e-19  Score=144.07  Aligned_cols=245  Identities=14%  Similarity=0.185  Sum_probs=173.0

Q ss_pred             CeEEEEecCCcc-eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee--eee----cccccccEEEEE
Q 036585           37 ESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--SRY----FKGHHDRVVLLS  109 (304)
Q Consensus        37 ~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~--~~~----~~~~~~~v~~~~  109 (304)
                      +.+.+|++.... +...+. ....|.++.|+|....+++|+..  +|.|.+||+..+..  ...    ...|..+++.+.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y--~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv  298 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCY--NGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV  298 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeecc--CceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence            479999998763 333333 45689999999966655555542  99999999987754  222    235888999999


Q ss_pred             EcCCC--CEEEEcccCCeEEEEeCCcceeece-E-----E--------EeccceeEe---cCCCeEEEecCCCeEEE---
Q 036585          110 LCSSK--DCFISGSLDRTVLLWDQRAEKCQGL-L-----R--------VQGRPAAAY---DDQGLVFGYEKGPLDIF---  167 (304)
Q Consensus       110 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~-~-----~--------~~~~~~~~~---~~~~~~~~~~~~~~~~~---  167 (304)
                      |..+.  .-|++++.||.|..|+++.-..... .     .        ......+.+   .++.++++.+.|.+..-   
T Consensus       299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~  378 (555)
T KOG1587|consen  299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK  378 (555)
T ss_pred             EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence            98644  4499999999999998775433111 0     0        011112222   34456666665555441   


Q ss_pred             --------------EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC-CCceeEEEEeCCCCCCcceEEEEcCCC-c
Q 036585          168 --------------SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEG-M  231 (304)
Q Consensus       168 --------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~-~  231 (304)
                                    ....|.++|+++.++|=+..++..+.|.++++|... ...++..+.   .+...+++++|||-. .
T Consensus       379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~---~~~~~v~~vaWSptrpa  455 (555)
T KOG1587|consen  379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD---SSPDYVTDVAWSPTRPA  455 (555)
T ss_pred             CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh---hccceeeeeEEcCcCce
Confidence                          122467889999999977666666669999999987 556666665   456679999999965 5


Q ss_pred             EEEEecCCCcEEEEecCC--CceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585          232 FVISGSGDGSVHAWSVRS--GKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       232 ~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~  287 (304)
                      .++++..||.|.+||+..  .+++.+.+.+....+.+.|++.|+.|+.|...  +.+|.+
T Consensus       456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            677888899999999964  34555555566777888999999999999988  566666

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=1.4e-19  Score=142.19  Aligned_cols=203  Identities=10%  Similarity=0.092  Sum_probs=158.6

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEE
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV  106 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  106 (304)
                      .+.++.++.||.+.+.+ +.++....+..|.+.+.+-.|+|+|.-|++++.   ||.|++|.- +|....++.....+|+
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GE---DG~iKiWSr-sGMLRStl~Q~~~~v~  149 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGE---DGVIKIWSR-SGMLRSTVVQNEESIR  149 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecC---CceEEEEec-cchHHHHHhhcCceeE
Confidence            35788899999999988 567888889999999999999999999999999   999999984 4555555666778999


Q ss_pred             EEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCc
Q 036585          107 LLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGR  186 (304)
Q Consensus       107 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (304)
                      |++|.|+.+.++.+.. +.+.|=.+.....                             +...+.|.+-|.++.|++...
T Consensus       150 c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k-----------------------------~i~WkAHDGiiL~~~W~~~s~  199 (737)
T KOG1524|consen  150 CARWAPNSNSIVFCQG-GHISIKPLAANSK-----------------------------IIRWRAHDGLVLSLSWSTQSN  199 (737)
T ss_pred             EEEECCCCCceEEecC-CeEEEeecccccc-----------------------------eeEEeccCcEEEEeecCcccc
Confidence            9999998775555433 4555544433222                             223346888999999999999


Q ss_pred             EEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceE
Q 036585          187 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVI  266 (304)
Q Consensus       187 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  266 (304)
                      .+++|+.|-..++||. .|..+..-.   .|+.+|++++|.|+ +.++.++. +++|+           -....+.|..+
T Consensus       200 lI~sgGED~kfKvWD~-~G~~Lf~S~---~~ey~ITSva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnl  262 (737)
T KOG1524|consen  200 IIASGGEDFRFKIWDA-QGANLFTSA---AEEYAITSVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNL  262 (737)
T ss_pred             ceeecCCceeEEeecc-cCcccccCC---hhccceeeeeeccc-cceeeeee-eeeee-----------cCCCccceEEE
Confidence            9999999999999995 455555544   58999999999999 55665653 23441           12346789999


Q ss_pred             EeCCCCcEEEEecCc
Q 036585          267 KWAPGSLMFVTGSSE  281 (304)
Q Consensus       267 ~~~~~~~~l~s~~~d  281 (304)
                      +||+||..++.|...
T Consensus       263 sWS~DGTQ~a~gt~~  277 (737)
T KOG1524|consen  263 SWSADGTQATCGTST  277 (737)
T ss_pred             EEcCCCceeeccccC
Confidence            999999999998887

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=4.3e-18  Score=140.53  Aligned_cols=222  Identities=15%  Similarity=0.127  Sum_probs=149.6

Q ss_pred             CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCE
Q 036585           37 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC  116 (304)
Q Consensus        37 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  116 (304)
                      ..|.+||.. +...+.+..+...+...+|+|+++.|++.+..+.+..|++||+.+++... +....+...+..|+|+|+.
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence            358899976 44445566667789999999999999988753225679999998876533 3334445567899999987


Q ss_pred             EE-EcccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC
Q 036585          117 FI-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM  193 (304)
Q Consensus       117 l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  193 (304)
                      ++ +.+.+|  .|++||+.+++.....                              .+.......+|+|||+.|+..+.
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt------------------------------~~~~~~~~~~~spDG~~l~f~sd  311 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLTRLT------------------------------NHFGIDTEPTWAPDGKSIYFTSD  311 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeEECc------------------------------cCCCCccceEECCCCCEEEEEEC
Confidence            75 444444  6999999876543221                              12223456899999998887764


Q ss_pred             -CC--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC---cEEEEecCCCceeeeeeccCCCCceEE
Q 036585          194 -EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVHAWSVRSGKEVASWMSFDTEPPVIK  267 (304)
Q Consensus       194 -dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~i~~~~  267 (304)
                       +|  .|+++|+.+++... +..   ........+|+|||++|+..+.++   .|.+||+.+++.. .+. +........
T Consensus       312 ~~g~~~iy~~dl~~g~~~~-lt~---~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~  385 (433)
T PRK04922        312 RGGRPQIYRVAASGGSAER-LTF---QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPS  385 (433)
T ss_pred             CCCCceEEEEECCCCCeEE-eec---CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCce
Confidence             44  47777877765433 321   223344689999999988765433   5999999887654 333 333456789


Q ss_pred             eCCCCcEEEEecCc-----eEEeccCCccccccc
Q 036585          268 WAPGSLMFVTGSSE-----LSFWIPDLSKLGAYV  296 (304)
Q Consensus       268 ~~~~~~~l~s~~~d-----~~iw~~~~~~~~~~~  296 (304)
                      |+|||++++..+.+     +.+++.+......+.
T Consensus       386 ~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~  419 (433)
T PRK04922        386 FAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLV  419 (433)
T ss_pred             ECCCCCEEEEEEecCCceEEEEEECCCCceEEcc
Confidence            99999988776654     445555555444443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=3.6e-19  Score=131.68  Aligned_cols=233  Identities=15%  Similarity=0.261  Sum_probs=171.8

Q ss_pred             cEEEEeeCCCeEEEEecCCc---ceeeeec--ccccceeEEEEccC----CCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           28 IYLVTASDDESIRLYDVTAA---TCLKTIN--SKKYGVDLVCFTSH----PTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~~---~~~~~~~--~~~~~v~~~~~~~~----~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      ..+|+++.+ .+.+|+....   ..++.+.  .|......++|+-+    ..++++++.   -|.|+|.|+.+++....+
T Consensus        56 ~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~---~GvIrVid~~~~~~~~~~  131 (385)
T KOG1034|consen   56 QVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY---LGVIRVIDVVSGQCSKNY  131 (385)
T ss_pred             ceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc---eeEEEEEecchhhhccce
Confidence            456676654 6889987643   3344433  25667788888764    346777776   999999999999999999


Q ss_pred             ccccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585           99 KGHHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus        99 ~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      .+|...|..+.++|+ .+++++++.|..|++|++++..++..+..-                          ++|...|.
T Consensus       132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~--------------------------egHrdeVL  185 (385)
T KOG1034|consen  132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV--------------------------EGHRDEVL  185 (385)
T ss_pred             eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc--------------------------ccccCcEE
Confidence            999999999999995 579999999999999999999988776422                          47899999


Q ss_pred             EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEE-------------------------EEeCCCCCCcceEEEEcCCCcE
Q 036585          178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST-------------------------YNVKPVSRNSTLEASFSPEGMF  232 (304)
Q Consensus       178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-------------------------~~~~~~~~~~i~~~~~s~~~~~  232 (304)
                      ++.|+++|.++++++.|.+|++|++...+....                         +.....|..+|-|+.|-  |++
T Consensus       186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~  263 (385)
T KOG1034|consen  186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDF  263 (385)
T ss_pred             EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhh
Confidence            999999999999999999999999874321111                         11112355566666663  578


Q ss_pred             EEEecCCCcEEEEecCC-Cc-------------eeeeeeccCCCCceEE--eCCCCcEEEEecCc--eEEeccCCccc
Q 036585          233 VISGSGDGSVHAWSVRS-GK-------------EVASWMSFDTEPPVIK--WAPGSLMFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       233 l~~~~~dg~i~v~d~~~-~~-------------~~~~~~~~~~~i~~~~--~~~~~~~l~s~~~d--~~iw~~~~~~~  292 (304)
                      +++-+-++.|..|.... .+             .+.++.-....|+-+.  |.|-+++||.|...  +.+|+++....
T Consensus       264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence            99988899999998721 11             1233333444555555  55667889988877  77787765443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=6.1e-18  Score=139.03  Aligned_cols=215  Identities=14%  Similarity=0.124  Sum_probs=146.5

Q ss_pred             eeEeecccCcEEEEeeC---CCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           19 EILQSMEVGIYLVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      ....++|||+.|+..+.   +..+.+|++.+++... +......+..+.|+|||+.|+.......+..|++||+.+++..
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~  280 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR  280 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            45789999999887643   3579999998875432 2222233556899999999987644211346999999887654


Q ss_pred             eecccccccEEEEEEcCCCCEEEEcccC-C--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585           96 RYFKGHHDRVVLLSLCSSKDCFISGSLD-R--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD  172 (304)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (304)
                      +. ..+...+....|+|+|+.|+..+.+ +  .|+++|+.++.... +.                             ..
T Consensus       281 ~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt-----------------------------~~  329 (429)
T PRK03629        281 QV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-IT-----------------------------WE  329 (429)
T ss_pred             Ec-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-ee-----------------------------cC
Confidence            43 3344567889999999988776653 4  44455665543321 11                             11


Q ss_pred             CCCceEEEEecCCcEEEEeeCC---CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCc---EEEEe
Q 036585          173 ISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS---VHAWS  246 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---i~v~d  246 (304)
                      ........|+|||++++..+.+   ..|.+||+.+++.. .+..    ........|+|||++|+.++.++.   +.+++
T Consensus       330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~----~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~  404 (429)
T PRK03629        330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD----TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVS  404 (429)
T ss_pred             CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC----CCCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence            1234568899999998876543   35889999887643 2321    122345789999999998887764   67777


Q ss_pred             cCCCceeeeeeccCCCCceEEeCCC
Q 036585          247 VRSGKEVASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       247 ~~~~~~~~~~~~~~~~i~~~~~~~~  271 (304)
                      + +++....+.+|.+.+...+|+|-
T Consensus       405 ~-~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        405 T-DGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             C-CCCCeEECccCCCCcCCcccCCC
Confidence            6 56666778788889999999983

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.82  E-value=1.7e-18  Score=127.78  Aligned_cols=205  Identities=15%  Similarity=0.144  Sum_probs=160.7

Q ss_pred             cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce---eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC
Q 036585           56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR  132 (304)
Q Consensus        56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  132 (304)
                      -..+|+|.+|++|...++++..   ...|.||.....+   ..++++.|...|+.++|+|..+.|++++.|..-++|...
T Consensus         9 ~~~pitchAwn~drt~iAv~~~---~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPN---NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             ccCceeeeeecCCCceEEeccC---CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            3468999999999999999998   8899999987654   678899999999999999999999999999999999984


Q ss_pred             -cceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEE
Q 036585          133 -AEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  211 (304)
Q Consensus       133 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  211 (304)
                       .++-...+..                           ..++...+++.|+|.++.|++|+....|.||-++..+.-..-
T Consensus        86 ~~~~WkptlvL---------------------------lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs  138 (361)
T KOG1523|consen   86 SGGTWKPTLVL---------------------------LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS  138 (361)
T ss_pred             CCCeeccceeE---------------------------EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh
Confidence             3333322221                           135578899999999999999999999999887654322110


Q ss_pred             -EeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC-----C-------------CceeeeeeccCCCCceEEeCCCC
Q 036585          212 -NVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR-----S-------------GKEVASWMSFDTEPPVIKWAPGS  272 (304)
Q Consensus       212 -~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-----~-------------~~~~~~~~~~~~~i~~~~~~~~~  272 (304)
                       .........|+++.|+|++-+|++|+.|+..||+..-     .             |+++.++....+.+..+.|+|+|
T Consensus       139 KhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG  218 (361)
T KOG1523|consen  139 KHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG  218 (361)
T ss_pred             hhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC
Confidence             0112467889999999999999999999999999652     1             12233444566789999999999


Q ss_pred             cEEEEecCc--eEEeccCCc
Q 036585          273 LMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       273 ~~l~s~~~d--~~iw~~~~~  290 (304)
                      ..|+-.+.|  +.+=+....
T Consensus       219 ~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  219 NRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             CEeeEecCCCceEEeecCCC
Confidence            999999988  666555443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=2.3e-17  Score=136.39  Aligned_cols=205  Identities=13%  Similarity=0.104  Sum_probs=143.6

Q ss_pred             eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585           38 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF  117 (304)
Q Consensus        38 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  117 (304)
                      .|.++|.. +...+.+..|...+...+|+|||+.|+..+....+..|++||+.+++.. .+..+.+.+....|+|+|+.|
T Consensus       183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence            68888875 4445566677788999999999999998875322678999999887653 344466677889999999876


Q ss_pred             E-EcccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-
Q 036585          118 I-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-  193 (304)
Q Consensus       118 ~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  193 (304)
                      + +.+.++  .|++||++++......                              .+........|+|||+.++..+. 
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt------------------------------~~~~~~~~~~~spDG~~i~f~s~~  310 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTTTRLT------------------------------DSPAIDTSPSYSPDGSQIVFESDR  310 (435)
T ss_pred             EEEEecCCCceEEEEECCCCceEEcc------------------------------CCCCccCceeEcCCCCEEEEEECC
Confidence            5 445555  4777788776543221                              12234556899999998887764 


Q ss_pred             CC--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEecCCCceeeeeeccCCCCceEEe
Q 036585          194 EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSVRSGKEVASWMSFDTEPPVIKW  268 (304)
Q Consensus       194 dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~  268 (304)
                      +|  .|+++|+..++... +.   .....+....|+|||++|+....+   ..|.+||+..+.. ..+. ....+..+.|
T Consensus       311 ~g~~~Iy~~d~~g~~~~~-lt---~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~  384 (435)
T PRK05137        311 SGSPQLYVMNADGSNPRR-IS---FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTW  384 (435)
T ss_pred             CCCCeEEEEECCCCCeEE-ee---cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeE
Confidence            33  68888987665433 33   134455668899999999876543   3688889765443 3332 2335778899


Q ss_pred             CCCCcEEEEecC
Q 036585          269 APGSLMFVTGSS  280 (304)
Q Consensus       269 ~~~~~~l~s~~~  280 (304)
                      +|||+.|+..+.
T Consensus       385 spDG~~i~~~~~  396 (435)
T PRK05137        385 APNGRVIMFFRQ  396 (435)
T ss_pred             CCCCCEEEEEEc
Confidence            999998876554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=5.2e-19  Score=134.22  Aligned_cols=205  Identities=16%  Similarity=0.232  Sum_probs=155.0

Q ss_pred             cceeEEEEccCCC-eEEEEecCCCCCceEEEEccCce---------eeeecccccccEEEEEEcCCCCEEEEcccCCeEE
Q 036585           58 YGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNK---------YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL  127 (304)
Q Consensus        58 ~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  127 (304)
                      .++..+.|.++.. .+++++.   |..|++|-++.++         ....+..|...|+++.|+|+|..|++|+.+|.+.
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~---D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~   90 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGG---DKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF   90 (434)
T ss_pred             CceEEEEeccCcccceecccC---ccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence            4899999998877 8999988   9999999886542         3456778999999999999999999999999999


Q ss_pred             EEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce
Q 036585          128 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL  207 (304)
Q Consensus       128 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  207 (304)
                      +|-...-..   +....  ...        .....-+....+.+|...+..++|+|++.++++++.|..+++||+..|+.
T Consensus        91 lWk~~~~~~---~~~d~--e~~--------~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l  157 (434)
T KOG1009|consen   91 LWKQGDVRI---FDADT--EAD--------LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL  157 (434)
T ss_pred             EEEecCcCC---ccccc--hhh--------hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee
Confidence            998663111   00000  000        00001122334557889999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee-------------------ccCC----CCc
Q 036585          208 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM-------------------SFDT----EPP  264 (304)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-------------------~~~~----~i~  264 (304)
                      ...+.   .|...+..++|.|-++++++-+.|...+.+.+...+.+....                   .|..    -..
T Consensus       158 ~~~~~---dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr  234 (434)
T KOG1009|consen  158 LAILD---DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR  234 (434)
T ss_pred             Eeecc---ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence            98888   799999999999999999999999877777765433221110                   1221    235


Q ss_pred             eEEeCCCCcEEEEecCc
Q 036585          265 VIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       265 ~~~~~~~~~~l~s~~~d  281 (304)
                      .++|+|+|.+|++.+.-
T Consensus       235 RlsfTPdG~llvtPag~  251 (434)
T KOG1009|consen  235 RLSFTPDGSLLVTPAGL  251 (434)
T ss_pred             hcccCCCCcEEEcccce
Confidence            68899999999886543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=2.3e-17  Score=135.82  Aligned_cols=207  Identities=13%  Similarity=0.120  Sum_probs=136.9

Q ss_pred             CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCE
Q 036585           37 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC  116 (304)
Q Consensus        37 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  116 (304)
                      ..|.++|.. +...+.+..+...+.+.+|+||++.|+..+.......|.+||+.+++... +....+.+.+..|+|||+.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            357777764 44445565677789999999999999988753224569999999886543 3333455678999999998


Q ss_pred             EE-EcccCCeEEEEeC--CcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC
Q 036585          117 FI-SGSLDRTVLLWDQ--RAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM  193 (304)
Q Consensus       117 l~-~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  193 (304)
                      |+ +.+.++...+|.+  ..+... .+.                             .+........|+|||+.|+..+.
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~~~-~lt-----------------------------~~~~~~~~~~wSpDG~~l~f~s~  303 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSGLR-RLT-----------------------------QSSGIDTEPFFSPDGRSIYFTSD  303 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCCcE-ECC-----------------------------CCCCCCcCeEEcCCCCEEEEEec
Confidence            76 4567776666654  333221 111                             12233456789999998886654


Q ss_pred             -CCeEEEEE--cCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC---cEEEEecCCCceeeeeeccCCCCceEE
Q 036585          194 -EGHIHVLD--SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVHAWSVRSGKEVASWMSFDTEPPVIK  267 (304)
Q Consensus       194 -dg~i~~~d--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~i~~~~  267 (304)
                       +|...+|.  +.+++.. .+..   ........+|||||++|+..+.++   .|++||+.+++.. .+.. ........
T Consensus       304 ~~g~~~Iy~~~~~~g~~~-~lt~---~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~  377 (427)
T PRK02889        304 RGGAPQIYRMPASGGAAQ-RVTF---TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPS  377 (427)
T ss_pred             CCCCcEEEEEECCCCceE-EEec---CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccC-CCCccCce
Confidence             45555554  4444432 2221   223344678999999998776554   5999999887654 3322 23446789


Q ss_pred             eCCCCcEEEEecCc
Q 036585          268 WAPGSLMFVTGSSE  281 (304)
Q Consensus       268 ~~~~~~~l~s~~~d  281 (304)
                      |+|||+.|+.++.+
T Consensus       378 ~spdg~~l~~~~~~  391 (427)
T PRK02889        378 FAPNGRYILYATQQ  391 (427)
T ss_pred             ECCCCCEEEEEEec
Confidence            99999998887765

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=9.9e-19  Score=140.29  Aligned_cols=228  Identities=16%  Similarity=0.207  Sum_probs=161.0

Q ss_pred             ccCcEEE--EeeCCCeEEEEecCCc-cee----eeecccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEccCc----
Q 036585           25 EVGIYLV--TASDDESIRLYDVTAA-TCL----KTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDN----   92 (304)
Q Consensus        25 ~~~~~l~--~~~~d~~i~vw~~~~~-~~~----~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~----   92 (304)
                      .+..++|  .++.-|.|-||++... ++.    -.+. ....|+.+.|.| |...|++++.   ||.|++|.+..+    
T Consensus       589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~d---dg~i~lWr~~a~gl~e  664 (1012)
T KOG1445|consen  589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATD---DGQINLWRLTANGLPE  664 (1012)
T ss_pred             eccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeeccc---CceEEEEEeccCCCCc
Confidence            3344444  3455689999998753 221    1222 234799999999 6778999998   999999998754    


Q ss_pred             ---eeeeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585           93 ---KYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS  168 (304)
Q Consensus        93 ---~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
                         .+...+..|...|+++.|+| -...|++++.|-+|++||+++.+....+.                           
T Consensus       665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~---------------------------  717 (1012)
T KOG1445|consen  665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV---------------------------  717 (1012)
T ss_pred             ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec---------------------------
Confidence               34566788999999999999 55689999999999999999887665554                           


Q ss_pred             ecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce-eEEEEeCCCCCCcceEEEEcCCCcEEEEecCC----CcEE
Q 036585          169 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGD----GSVH  243 (304)
Q Consensus       169 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~  243 (304)
                        +|++.|..++|||+|+.+++.+.||+|++|+.++++. +..-...  ....--.+.|.-||+++++.+.|    ..|.
T Consensus       718 --gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp--vgtRgARi~wacdgr~viv~Gfdk~SeRQv~  793 (1012)
T KOG1445|consen  718 --GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGP--VGTRGARILWACDGRIVIVVGFDKSSERQVQ  793 (1012)
T ss_pred             --cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCC--ccCcceeEEEEecCcEEEEecccccchhhhh
Confidence              7899999999999999999999999999999887653 2222211  22333457788899998887755    4688


Q ss_pred             EEecCCCc--eeeeeeccCC-CCceEEeCCCCc-EEEEecCc--eEEecc
Q 036585          244 AWSVRSGK--EVASWMSFDT-EPPVIKWAPGSL-MFVTGSSE--LSFWIP  287 (304)
Q Consensus       244 v~d~~~~~--~~~~~~~~~~-~i~~~~~~~~~~-~l~s~~~d--~~iw~~  287 (304)
                      +||..+..  ++.+..-... .+.--.+.+|.. +|++|-.|  +.+|.+
T Consensus       794 ~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv  843 (1012)
T KOG1445|consen  794 MYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV  843 (1012)
T ss_pred             hhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence            99876533  3333211111 111122455655 55666666  666654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=4.4e-19  Score=139.85  Aligned_cols=221  Identities=14%  Similarity=0.145  Sum_probs=157.6

Q ss_pred             eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc-cccccEEEEEEcC--CCCEEEEcccCCe
Q 036585           49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK-GHHDRVVLLSLCS--SKDCFISGSLDRT  125 (304)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~  125 (304)
                      +.+.+.+|++.|+|++|+.+|.+|++|+.   |-.+.|||.-..+.+..+. +|...|.++.|-|  +.+.+++|..|..
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSD---D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSD---DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCC---cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence            34678899999999999999999999999   9999999998888777664 8999999999998  5568999999999


Q ss_pred             EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCC
Q 036585          126 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~  204 (304)
                      |+++|+...+.-..-.....                   .......|...|..++-.|++ ..+.+++.||+|+-||++.
T Consensus       119 i~lfdl~~~~~~~~d~~~~~-------------------~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEE-------------------TTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             EEEEecccccccccccCccc-------------------hhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            99999985432211110000                   011112477788889999988 7899999999999999986


Q ss_pred             CceeEEE-------EeCCCCCCcceEEEEcCC-CcEEEEecCCCcEEEEecCC--------Cc----------eeeee-e
Q 036585          205 GTLLSTY-------NVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRS--------GK----------EVASW-M  257 (304)
Q Consensus       205 ~~~~~~~-------~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~--------~~----------~~~~~-~  257 (304)
                      ......-       ......--...++.++|. ..+|++|+.|-..++||.+.        +.          ++.-+ .
T Consensus       180 ph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p  259 (758)
T KOG1310|consen  180 PHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP  259 (758)
T ss_pred             CccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC
Confidence            3221110       000011234668899994 56789999999999999432        11          11111 2


Q ss_pred             ccC-----------CCCceEEeCCCCc-EEEEecCc-eEEeccCCcc
Q 036585          258 SFD-----------TEPPVIKWAPGSL-MFVTGSSE-LSFWIPDLSK  291 (304)
Q Consensus       258 ~~~-----------~~i~~~~~~~~~~-~l~s~~~d-~~iw~~~~~~  291 (304)
                      +|.           ..++-+.|+|+|. +|++-+.+ +.+++++-.+
T Consensus       260 ~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  260 GHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             ccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence            222           1145678999984 66666666 8888886543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=7.8e-17  Score=119.00  Aligned_cols=234  Identities=10%  Similarity=0.111  Sum_probs=163.4

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCC----CCCceEEEEccCceeee
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG----WDESLRLLSLHDNKYSR   96 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~d~~i~vwd~~~~~~~~   96 (304)
                      +++..|..-++.|..+| .|||+.+.-+.....+.+.+++.-+..---.++++..+.++    ....+.|||=...+++.
T Consensus        11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~   89 (346)
T KOG2111|consen   11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCII   89 (346)
T ss_pred             EEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEE
Confidence            78888888899998877 99999876444333333333322222222445555544321    24689999977777777


Q ss_pred             ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC-cceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD  175 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (304)
                      ++. ...+|.++.+.++  .+++.- +..|++|... ..+....+.....                           ...
T Consensus        90 el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N---------------------------PkG  138 (346)
T KOG2111|consen   90 ELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN---------------------------PKG  138 (346)
T ss_pred             EEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC---------------------------CCc
Confidence            776 6789999999865  355443 5789999987 4444444442211                           122


Q ss_pred             ceEEEEecCCcEEEE-eeCCCeEEEEEcCCCce--eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCc-EEEEecCCCc
Q 036585          176 ANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS-VHAWSVRSGK  251 (304)
Q Consensus       176 v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~v~d~~~~~  251 (304)
                      +.+++-..+..+|+. |-.-|.|++-|+...+.  ...+.   .|...|.+++++.+|..+|+++..|+ |||||..+++
T Consensus       139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~---AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~  215 (346)
T KOG2111|consen  139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN---AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT  215 (346)
T ss_pred             eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE---cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc
Confidence            333333333444554 44579999999977655  24455   69999999999999999999999997 8999999999


Q ss_pred             eeeeeec--cCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          252 EVASWMS--FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       252 ~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      ++.+++.  ....|.+++|||+..+||++|+.  +.|+.+..
T Consensus       216 ~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  216 LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            9999843  34579999999999999999988  77776644

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.2e-17  Score=124.03  Aligned_cols=223  Identities=16%  Similarity=0.288  Sum_probs=155.1

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecc-cccceeEEEEccCCC-eEEEEecCCCCCceEEEEccCc----e
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDN----K   93 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~----~   93 (304)
                      .+++.+.-..+|++..|-.||+|+-.. +....++. ....|.|++|-|.+. .|++++    .+.|.+|.....    .
T Consensus       103 ~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC----r~gIciW~~s~tln~~r  177 (445)
T KOG2139|consen  103 GVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC----RAGICIWSDSRTLNANR  177 (445)
T ss_pred             eEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee----cceeEEEEcCccccccc
Confidence            355666555688899999999999765 55555553 346799999999655 455555    788999987531    1


Q ss_pred             e----------eeecccccccEEEEEEcCCCCEEEEccc-CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585           94 Y----------SRYFKGHHDRVVLLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG  162 (304)
Q Consensus        94 ~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (304)
                      .          +....+| .+|+++.|.+||..+++++. |..|.|||..++..+.....                    
T Consensus       178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--------------------  236 (445)
T KOG2139|consen  178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--------------------  236 (445)
T ss_pred             ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--------------------
Confidence            1          1122344 58999999999999999875 57899999999887655421                    


Q ss_pred             CeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcE
Q 036585          163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV  242 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  242 (304)
                               ..+.++-+.|||||.+|++++-|+..++|+...........   -..+.|...+|+|+|++|+.+.. |.=
T Consensus       237 ---------glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~---lgsgrvqtacWspcGsfLLf~~s-gsp  303 (445)
T KOG2139|consen  237 ---------GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI---LGSGRVQTACWSPCGSFLLFACS-GSP  303 (445)
T ss_pred             ---------CCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee---ccCCceeeeeecCCCCEEEEEEc-CCc
Confidence                     23467779999999999999999999999654333233333   24558999999999998765542 233


Q ss_pred             EEEecCC-Cc--------------eeeee------e---ccCCCCceEEeCCCCcEEEEecCc
Q 036585          243 HAWSVRS-GK--------------EVASW------M---SFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       243 ~v~d~~~-~~--------------~~~~~------~---~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      ++|.+.- ++              ++..+      .   --.+++.+++|.|.|.+||+.-+.
T Consensus       304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg  366 (445)
T KOG2139|consen  304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG  366 (445)
T ss_pred             eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence            4454421 00              01111      0   124678999999999999987654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.80  E-value=3.4e-18  Score=134.58  Aligned_cols=179  Identities=13%  Similarity=0.245  Sum_probs=141.5

Q ss_pred             CeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeE
Q 036585           70 TTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA  149 (304)
Q Consensus        70 ~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  149 (304)
                      ..++.++.   ||.+.+.+- .++....+..|.+.+.+-.|+|+|.-|++++.||.|++|. +++-...++.        
T Consensus        76 d~~~i~s~---DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~--------  142 (737)
T KOG1524|consen   76 DTLLICSN---DGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV--------  142 (737)
T ss_pred             ceEEEEcC---CceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh--------
Confidence            35666666   999998874 4566677889999999999999999999999999999997 3443332222        


Q ss_pred             ecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585          150 YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  229 (304)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~  229 (304)
                                           ....+|.|++|.|+.+.++.+. .+.+.+=-+.....+...+   .|.+-|.++.|+|.
T Consensus       143 ---------------------Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk---AHDGiiL~~~W~~~  197 (737)
T KOG1524|consen  143 ---------------------QNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR---AHDGLVLSLSWSTQ  197 (737)
T ss_pred             ---------------------hcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEe---ccCcEEEEeecCcc
Confidence                                 1335789999999887665543 4567777776666666666   79999999999999


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccC
Q 036585          230 GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPD  288 (304)
Q Consensus       230 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~  288 (304)
                      .+.+++|++|-..+|||. .|..+..-..|..+|++++|+|+ ..++.++.+ .|+=.++
T Consensus       198 s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~  255 (737)
T KOG1524|consen  198 SNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSPR  255 (737)
T ss_pred             ccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeeeeeeeecCCC
Confidence            999999999999999995 57777777889999999999999 777777776 5543333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=1.2e-16  Score=127.90  Aligned_cols=228  Identities=11%  Similarity=0.155  Sum_probs=144.3

Q ss_pred             cceeeEeecccCcEEEEeeC-CCeEEEEecCCcc----eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585           16 LSEEILQSMEVGIYLVTASD-DESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   90 (304)
Q Consensus        16 ~~~~~i~~~~~~~~l~~~~~-d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~   90 (304)
                      .+...+.++|+|++|++++. ++.|.+|++++..    .+..+.+ ......++++|++++++++...  ++.|.+||+.
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~--~~~v~v~d~~  156 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLK--EDRIRLFTLS  156 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCC--CCEEEEEEEC
Confidence            35567889999998888774 7899999987432    2222322 2356788999999999877763  8999999997


Q ss_pred             Cceeeee-----cc-cccccEEEEEEcCCCCEEEEccc-CCeEEEEeCCcc--eeeceEEEeccceeEecCCCeEEEecC
Q 036585           91 DNKYSRY-----FK-GHHDRVVLLSLCSSKDCFISGSL-DRTVLLWDQRAE--KCQGLLRVQGRPAAAYDDQGLVFGYEK  161 (304)
Q Consensus        91 ~~~~~~~-----~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (304)
                      +...+..     .. ........+.|+|++++++++.. ++.|.+|++...  +..........+      ..       
T Consensus       157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p------~~-------  223 (330)
T PRK11028        157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP------AD-------  223 (330)
T ss_pred             CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC------Cc-------
Confidence            6332211     11 11234567999999999888765 899999999742  221111110000      00       


Q ss_pred             CCeEEEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC-C
Q 036585          162 GPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-D  239 (304)
Q Consensus       162 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d  239 (304)
                              ..+......+.++|++++++++.. ++.|.+|++.......++............++|+|+|++|+++.. +
T Consensus       224 --------~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~  295 (330)
T PRK11028        224 --------FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS  295 (330)
T ss_pred             --------CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence                    001122346889999999999854 689999998654321111111011234557899999999998775 8


Q ss_pred             CcEEEEecC--CCce--eeeeeccCCCCceEEe
Q 036585          240 GSVHAWSVR--SGKE--VASWMSFDTEPPVIKW  268 (304)
Q Consensus       240 g~i~v~d~~--~~~~--~~~~~~~~~~i~~~~~  268 (304)
                      +.|.+|++.  ++..  +..+.. .....+++|
T Consensus       296 ~~v~v~~~~~~~g~l~~~~~~~~-g~~P~~~~~  327 (330)
T PRK11028        296 HHISVYEIDGETGLLTELGRYAV-GQGPMWVSV  327 (330)
T ss_pred             CcEEEEEEcCCCCcEEEcccccc-CCCceEEEE
Confidence            899999874  3332  333332 334455554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.7e-17  Score=130.44  Aligned_cols=249  Identities=18%  Similarity=0.258  Sum_probs=182.0

Q ss_pred             ceeeEeecccCcEE-EEeeCCCeEEEEecCCcceee----------------------------eecccc----------
Q 036585           17 SEEILQSMEVGIYL-VTASDDESIRLYDVTAATCLK----------------------------TINSKK----------   57 (304)
Q Consensus        17 ~~~~i~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~----------------------------~~~~~~----------   57 (304)
                      ....|.+++||+|+ |+|...-.|++||+....+..                            .+..|.          
T Consensus        53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RI  132 (703)
T KOG2321|consen   53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRI  132 (703)
T ss_pred             ccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeec
Confidence            44568999999985 567788899999987543211                            111111          


Q ss_pred             -cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee
Q 036585           58 -YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC  136 (304)
Q Consensus        58 -~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  136 (304)
                       ..-..|+++.-.--|++++.   ...|+-++++.|..+..+....+.+.++..++-..+|++|+.+|.|-.||.+....
T Consensus       133 P~~GRDm~y~~~scDly~~gs---g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr  209 (703)
T KOG2321|consen  133 PKFGRDMKYHKPSCDLYLVGS---GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR  209 (703)
T ss_pred             CcCCccccccCCCccEEEeec---CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence             01223444433333455554   67889999999999998887789999999999888999999999999999999887


Q ss_pred             eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC
Q 036585          137 QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  216 (304)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  216 (304)
                      ...+........  .|                -......|+++.|+.+|-.+++|+.+|.+.+||+++.+++..-..  .
T Consensus       210 v~~l~~~~~v~s--~p----------------g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh--~  269 (703)
T KOG2321|consen  210 VGTLDAASSVNS--HP----------------GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH--G  269 (703)
T ss_pred             heeeecccccCC--Cc----------------cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc--C
Confidence            777654322100  00                001224599999999999999999999999999999888766542  4


Q ss_pred             CCCcceEEEEcCC--CcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc---eEEeccCCc
Q 036585          217 SRNSTLEASFSPE--GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPDLS  290 (304)
Q Consensus       217 ~~~~i~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~~  290 (304)
                      ...+|..+.|.+.  ++.+++. ....++|||-.+|+....+. ....++.+++-|++.+++++-.+   ..+|..++.
T Consensus       270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             CccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence            5678999999775  4556665 45679999999999887775 44559999999999999999888   344444443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=4.4e-17  Score=134.60  Aligned_cols=213  Identities=16%  Similarity=0.156  Sum_probs=143.9

Q ss_pred             eEeecccCcEEEEeeCC---CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           20 ILQSMEVGIYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ...++|+|+.|+..+.+   ..|.+||+.+++... +....+......|+|+++.++.......+..|++||+.+++.. 
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-  285 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-  285 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-
Confidence            35788999999987743   469999998776533 3333444557899999998876543211447999999887643 


Q ss_pred             ecccccccEEEEEEcCCCCEEEEccc-CCe--EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSL-DRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI  173 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                      .+..+.......+|+|+++.++..+. +|.  |+++|+.+++..... .                             ..
T Consensus       286 ~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~-----------------------------~g  335 (433)
T PRK04922        286 RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-F-----------------------------QG  335 (433)
T ss_pred             ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-c-----------------------------CC
Confidence            44545555677899999998877653 444  666676655432211 0                             11


Q ss_pred             CCceEEEEecCCcEEEEeeCCC---eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEec
Q 036585          174 SDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSV  247 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~  247 (304)
                      ......+|+|+|++++..+.++   .|.+||+.+++.. .+.    +........|+|||++++..+.+   +.|.++++
T Consensus       336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt----~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT----PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC----CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            2234589999999998765443   6999999887654 332    22234457999999988776543   45888887


Q ss_pred             CCCceeeeeeccCCCCceEEeCC
Q 036585          248 RSGKEVASWMSFDTEPPVIKWAP  270 (304)
Q Consensus       248 ~~~~~~~~~~~~~~~i~~~~~~~  270 (304)
                      . +.....+..+.+.+...+|+|
T Consensus       411 ~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        411 D-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             C-CCceEEcccCCCCCCCCccCC
Confidence            4 455566666667788888987

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=7.8e-17  Score=133.62  Aligned_cols=258  Identities=16%  Similarity=0.208  Sum_probs=173.9

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCC---eEEEEecCCCCCceEEEEccCcee
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT---TVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      ...-.+++|+++++....+ .|.||...+++++..+.+|..++..+.+.|...   ++++.+.   +|.|++||...+..
T Consensus        19 ~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl---~G~I~vwd~~~~~L   94 (792)
T KOG1963|consen   19 KSPAVFSNDAKFLFLCTGN-FVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSL---DGTIRVWDWSDGEL   94 (792)
T ss_pred             ecccccccCCcEEEEeeCC-EEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEec---CccEEEecCCCcEE
Confidence            3445678899988887754 799999999999999999999999999988665   4567776   99999999999998


Q ss_pred             eeecccccccEEEEEEcC----CCCEEEEcccCCe------------EEEEeCCcceeec--eEE-EeccceeEecCCCe
Q 036585           95 SRYFKGHHDRVVLLSLCS----SKDCFISGSLDRT------------VLLWDQRAEKCQG--LLR-VQGRPAAAYDDQGL  155 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~------------i~iwd~~~~~~~~--~~~-~~~~~~~~~~~~~~  155 (304)
                      ++++..+ .++..+.+.|    ....+..+..|..            ++-+.+.+.....  ... ...+..+...+.+.
T Consensus        95 lkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge  173 (792)
T KOG1963|consen   95 LKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE  173 (792)
T ss_pred             EEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence            8887643 3444444422    1111112222211            1111111100000  000 01123344444443


Q ss_pred             EEE-ecCCCeEEEEec-------------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC-CceeEEEEeCCCCCCc
Q 036585          156 VFG-YEKGPLDIFSVG-------------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNS  220 (304)
Q Consensus       156 ~~~-~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~  220 (304)
                      +.+ .....+.+|...             .|...+++.++||++++++++..||+|.+|.-.. .....+.....-|...
T Consensus       174 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~  253 (792)
T KOG1963|consen  174 FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE  253 (792)
T ss_pred             EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence            321 122233333322             2555689999999999999999999999997432 1111111111147789


Q ss_pred             ceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585          221 TLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       221 i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      |++++|+++|.+|++|+..|.+.+|.+.+++ .+-++.-.++|..+.++||+.+.+....|
T Consensus       254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~D  313 (792)
T KOG1963|consen  254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLED  313 (792)
T ss_pred             cceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecC
Confidence            9999999999999999999999999999988 45567778999999999999988888888

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.78  E-value=3.3e-17  Score=119.46  Aligned_cols=115  Identities=18%  Similarity=0.417  Sum_probs=92.0

Q ss_pred             CCceEEEEecCCcEEEEe--eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC---CCcEEEEecC
Q 036585          174 SDANVVKFSNDGRLMLLT--TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG---DGSVHAWSVR  248 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~v~d~~  248 (304)
                      ++|.+++|+|+|+.|++.  ..++.|.+||++ ++.+..+.     ...++.+.|||+|++|++++.   .|.|.+||.+
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            469999999999987654  456799999996 55555553     456778999999999999864   4679999999


Q ss_pred             CCceeeeeeccCCCCceEEeCCCCcEEEEecC------c--eEEeccCCccccccc
Q 036585          249 SGKEVASWMSFDTEPPVIKWAPGSLMFVTGSS------E--LSFWIPDLSKLGAYV  296 (304)
Q Consensus       249 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~------d--~~iw~~~~~~~~~~~  296 (304)
                      +.+.+.... | ..++.++|+|||++|+++..      |  ++||++.++.+.+..
T Consensus       134 ~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~  187 (194)
T PF08662_consen  134 KKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP  187 (194)
T ss_pred             CCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence            888877764 3 34789999999999999874      3  899999988776543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.78  E-value=1e-15  Score=113.23  Aligned_cols=179  Identities=18%  Similarity=0.277  Sum_probs=135.0

Q ss_pred             CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc-Cceeeeeccccc--ccEEEEEEcCC
Q 036585           37 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYSRYFKGHH--DRVVLLSLCSS  113 (304)
Q Consensus        37 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~-~~~~~~~~~~~~--~~v~~~~~~~~  113 (304)
                      ..|.|||=...+++.++... .+|.++.+.  ..++++.-    .+.|+||... +.+.++.+....  ..+.++.-+.+
T Consensus        75 NkviIWDD~k~~~i~el~f~-~~I~~V~l~--r~riVvvl----~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~  147 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFN-SEIKAVKLR--RDRIVVVL----ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN  147 (346)
T ss_pred             ceEEEEecccCcEEEEEEec-cceeeEEEc--CCeEEEEe----cCeEEEEEcCCChhheeeeecccCCCceEeecCCCC
Confidence            36999996667777777643 489999995  45677776    7899999998 445555544222  23333333334


Q ss_pred             CCEEEE-cccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee
Q 036585          114 KDCFIS-GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT  192 (304)
Q Consensus       114 ~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  192 (304)
                      ..+|+. |-.-|.|+|-|+...+....                           ..+..|.+.|.+++.+.+|..+|+++
T Consensus       148 k~~LafPg~k~GqvQi~dL~~~~~~~p---------------------------~~I~AH~s~Iacv~Ln~~Gt~vATaS  200 (346)
T KOG2111|consen  148 KSLLAFPGFKTGQVQIVDLASTKPNAP---------------------------SIINAHDSDIACVALNLQGTLVATAS  200 (346)
T ss_pred             ceEEEcCCCccceEEEEEhhhcCcCCc---------------------------eEEEcccCceeEEEEcCCccEEEEec
Confidence            445555 34568999999876654211                           11236889999999999999999999


Q ss_pred             CCCe-EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585          193 MEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG  250 (304)
Q Consensus       193 ~dg~-i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~  250 (304)
                      ..|+ |++||..+|+.+.++.... ....|.+++|||++.+||+++..|+++|+.++..
T Consensus       201 tkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  201 TKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             cCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            9997 8999999999999988542 4578999999999999999999999999998753

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=1.9e-16  Score=130.41  Aligned_cols=212  Identities=14%  Similarity=0.126  Sum_probs=140.6

Q ss_pred             eEeecccCcEEEEeeCC---CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE--ccCcee
Q 036585           20 ILQSMEVGIYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS--LHDNKY   94 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd--~~~~~~   94 (304)
                      ...++|+|+.|+..+.+   ..|.+||+.+++... +....+.....+|+||++.|+.....  ++...||.  +.+++ 
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~--~g~~~Iy~~d~~~~~-  275 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSR--DGNSQIYTVNADGSG-  275 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEcc--CCCceEEEEECCCCC-
Confidence            46789999999887643   359999998886543 33333456689999999998865432  66655554  44444 


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEccc-CCeEEEEeC--CcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFISGSL-DRTVLLWDQ--RAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG  171 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (304)
                      ...+..+........|+|||+.++..+. ++...+|.+  .++.... +..                             
T Consensus       276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~-----------------------------  325 (427)
T PRK02889        276 LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTF-----------------------------  325 (427)
T ss_pred             cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-Eec-----------------------------
Confidence            4445555555677899999998876553 455566654  3332211 110                             


Q ss_pred             CCCCceEEEEecCCcEEEEeeCCC---eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC---cEEEE
Q 036585          172 DISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVHAW  245 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~  245 (304)
                      ........+|+|+|++++..+.++   .|.+||+.+++... +.    .........|+|||++|+.++.++   .+++.
T Consensus       326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt----~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~  400 (427)
T PRK02889        326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT----DTTRDESPSFAPNGRYILYATQQGGRSVLAAV  400 (427)
T ss_pred             CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc----CCCCccCceECCCCCEEEEEEecCCCEEEEEE
Confidence            111233578999999998877654   69999998876543 22    112335679999999988776443   36666


Q ss_pred             ecCCCceeeeeeccCCCCceEEeCCC
Q 036585          246 SVRSGKEVASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       246 d~~~~~~~~~~~~~~~~i~~~~~~~~  271 (304)
                      ++ +++....+..+.+.+...+|+|-
T Consensus       401 ~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        401 SS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EC-CCCceEEeecCCCCCCCCccCCC
Confidence            66 56666666667788888999884

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=6.7e-18  Score=131.26  Aligned_cols=269  Identities=18%  Similarity=0.281  Sum_probs=196.4

Q ss_pred             eeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeec-ccccceeEEEEccC--CCeEEEEecCCCCCceEE
Q 036585           13 SLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSH--PTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        13 ~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~~~~d~~i~v   86 (304)
                      .+..|.+.   +.|...|..|++++.|..|.+||...++....+. +|...|....|-|.  ...+++.+.   ||.+++
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~---dgqvr~  213 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR---DGQVRV  213 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc---cCceee
Confidence            34455544   6677889999999999999999999888776654 68888888888874  456777777   999998


Q ss_pred             EEccCcee---eeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEec---c-----ceeEecCCC
Q 036585           87 LSLHDNKY---SRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQG---R-----PAAAYDDQG  154 (304)
Q Consensus        87 wd~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~-----~~~~~~~~~  154 (304)
                      =.+.....   ...+..|.++|..++.-|+. ..|++++.|+.+.-+|++.......+....   .     ..++.+|..
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            87654322   34566799999999999954 479999999999999999877655443211   1     122333322


Q ss_pred             ---eEEEecCCCeEEEEec---------------------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC--C---
Q 036585          155 ---LVFGYEKGPLDIFSVG---------------------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR--G---  205 (304)
Q Consensus       155 ---~~~~~~~~~~~~~~~~---------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~---  205 (304)
                         +.++..+.-.++++..                     .....|++++|+.++..++++..|-.|+++.-..  |   
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p  373 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP  373 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence               2233333333333221                     2345689999998888888888999999995332  2   


Q ss_pred             -------ceeEE-EEeCCCCCC--cceEEE-EcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcE
Q 036585          206 -------TLLST-YNVKPVSRN--STLEAS-FSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLM  274 (304)
Q Consensus       206 -------~~~~~-~~~~~~~~~--~i~~~~-~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  274 (304)
                             ..... ++   +|.+  .|..+- |-|...|+++|+.-|.|.||+-++++.+.-+.+...-|+||.=+|--..
T Consensus       374 ~~~s~~~~~~k~vYK---GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv  450 (559)
T KOG1334|consen  374 DPSSPREQYVKRVYK---GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV  450 (559)
T ss_pred             CCCcchhhccchhhc---ccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence                   11122 33   3333  355554 5678899999999999999999999998888877779999999999999


Q ss_pred             EEEecCc--eEEecc
Q 036585          275 FVTGSSE--LSFWIP  287 (304)
Q Consensus       275 l~s~~~d--~~iw~~  287 (304)
                      ||+.+-|  |+||..
T Consensus       451 LAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  451 LASSGIDHDVKIWTP  465 (559)
T ss_pred             hhccCCccceeeecC
Confidence            9999988  999988

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.78  E-value=6.9e-16  Score=127.72  Aligned_cols=220  Identities=14%  Similarity=0.156  Sum_probs=148.1

Q ss_pred             eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585           38 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF  117 (304)
Q Consensus        38 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  117 (304)
                      .|.++|.... ..+.+..+...+...+|+|++++|+.+...+....|++||+.+++... +..+...+.++.|+|+++.|
T Consensus       171 ~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       171 ELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             eEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            5888887543 345555566678899999999999988763223589999998876433 33355567789999999877


Q ss_pred             EE-cccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC
Q 036585          118 IS-GSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME  194 (304)
Q Consensus       118 ~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  194 (304)
                      +. .+.++  .|++||+.++.......                              +........|+|+|+.|+..+..
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~------------------------------~~~~~~~~~~s~dg~~l~~~s~~  298 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLTRLTN------------------------------GPGIDTEPSWSPDGKSIAFTSDR  298 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEEECCC------------------------------CCCCCCCEEECCCCCEEEEEECC
Confidence            64 44443  58888887764332211                              22233457899999988776543


Q ss_pred             -C--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC---cEEEEecCCCceeeeeeccCCCCceEEe
Q 036585          195 -G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVHAWSVRSGKEVASWMSFDTEPPVIKW  268 (304)
Q Consensus       195 -g--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~i~~~~~  268 (304)
                       +  .|+++|+.+++.. .+.   ..........|+|+|++++.++.++   .|.+||+.++.. ..+... .......|
T Consensus       299 ~g~~~iy~~d~~~~~~~-~l~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~  372 (417)
T TIGR02800       299 GGSPQIYMMDADGGEVR-RLT---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSF  372 (417)
T ss_pred             CCCceEEEEECCCCCEE-Eee---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceE
Confidence             3  6888888776643 333   2345566789999999998887665   789999887543 333222 23456789


Q ss_pred             CCCCcEEEEecCc-----eEEeccCCcccccc
Q 036585          269 APGSLMFVTGSSE-----LSFWIPDLSKLGAY  295 (304)
Q Consensus       269 ~~~~~~l~s~~~d-----~~iw~~~~~~~~~~  295 (304)
                      +|++++|+..+.+     +.+...+......+
T Consensus       373 spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~  404 (417)
T TIGR02800       373 APNGRMILYATTRGGRGVLGLVSTDGRFRARL  404 (417)
T ss_pred             CCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence            9999988877665     44555555444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.77  E-value=1.1e-16  Score=116.68  Aligned_cols=158  Identities=17%  Similarity=0.329  Sum_probs=112.4

Q ss_pred             eEEEEccCCCeEEEEecC-------CCCCceEEEEccC-ceeeeeccc-ccccEEEEEEcCCCCEEEE--cccCCeEEEE
Q 036585           61 DLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHD-NKYSRYFKG-HHDRVVLLSLCSSKDCFIS--GSLDRTVLLW  129 (304)
Q Consensus        61 ~~~~~~~~~~~l~~~~~~-------~~d~~i~vwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~--~~~dg~i~iw  129 (304)
                      ..+.|+|+|++|++-...       .+-+...+|.++. +..+..+.- ..++|.+++|+|+++.|++  |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            457899999888776541       1123455665532 233444432 3457999999999998655  4467799999


Q ss_pred             eCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC---CCeEEEEEcCCCc
Q 036585          130 DQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGT  206 (304)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~  206 (304)
                      |++ .+.+..+                               +...++.+.|+|+|+++++++.   .|.|.+||.++.+
T Consensus        89 d~~-~~~i~~~-------------------------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~  136 (194)
T PF08662_consen   89 DVK-GKKIFSF-------------------------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK  136 (194)
T ss_pred             cCc-ccEeEee-------------------------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence            996 3222222                               2246678999999999999864   4779999999888


Q ss_pred             eeEEEEeCCCCCCcceEEEEcCCCcEEEEecC------CCcEEEEecCCCceeeee
Q 036585          207 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSG------DGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       207 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~  256 (304)
                      .+....    + ..++.++|+|||++++++..      |+.++||+. +|+.+...
T Consensus       137 ~i~~~~----~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  137 KISTFE----H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             Eeeccc----c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence            877765    3 34688999999999998863      788999998 46665543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=5.8e-18  Score=133.64  Aligned_cols=221  Identities=18%  Similarity=0.229  Sum_probs=157.2

Q ss_pred             eeeeecceeeE---eecccCcEEEEeeCCCeEEEEecCCcceeeeec-ccccceeEEEEccC--CCeEEEEecCCCCCce
Q 036585           11 KVSLELSEEIL---QSMEVGIYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSH--PTTVIYSSKNGWDESL   84 (304)
Q Consensus        11 ~~~~~~~~~~i---~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~~~~d~~i   84 (304)
                      ...+++|.+.|   .|..+|.+|++||.|-.+.|||.-..++++.+. +|...|.++.|-|.  ...+++|+.   |..|
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg---Dk~i  119 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG---DKLI  119 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC---cceE
Confidence            44577888775   566789999999999999999999888887775 79999999999994  456777776   9999


Q ss_pred             EEEEccC----------ceeeeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCC
Q 036585           85 RLLSLHD----------NKYSRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ  153 (304)
Q Consensus        85 ~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  153 (304)
                      +++|+..          .+....+..|...|..++-.|++ +.+.+++.||+|+-+|++....-..-..  ...      
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~--~~~------  191 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED--CPS------  191 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc--ccH------
Confidence            9999984          23455667899999999999987 7899999999999999987432111000  000      


Q ss_pred             CeEEEecCCCeEEEEecCCCCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCC--------c----------eeEEEEeC
Q 036585          154 GLVFGYEKGPLDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRG--------T----------LLSTYNVK  214 (304)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~--------~----------~~~~~~~~  214 (304)
                                 .+..+....-...++.++|. ..+|++|+.+-..++||.+..        .          ++..+.  
T Consensus       192 -----------~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~--  258 (758)
T KOG1310|consen  192 -----------ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS--  258 (758)
T ss_pred             -----------HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec--
Confidence                       00000011124567889985 468899999999999994321        1          111111  


Q ss_pred             CCCC-----------CcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeee
Q 036585          215 PVSR-----------NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS  255 (304)
Q Consensus       215 ~~~~-----------~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~  255 (304)
                      ++|-           ..++-+.|+|+|.-|+..-..-.|+++|+..++....
T Consensus       259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             CccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence            0111           1256688999998777765566799999987765443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.77  E-value=3.9e-15  Score=119.16  Aligned_cols=258  Identities=14%  Similarity=0.148  Sum_probs=162.8

Q ss_pred             CcEE-EEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE
Q 036585           27 GIYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV  105 (304)
Q Consensus        27 ~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v  105 (304)
                      ++++ ++-..++.|.+.|..+.+.+.++......-..+.|+||++++++++.   |+.|.++|+.+.+.+.+++. ....
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v~~i~~-G~~~   80 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVVATIKV-GGNP   80 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEEEEEE--SSEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC---CCeEEEEECCcccEEEEEec-CCCc
Confidence            3455 45567899999999999999999865544445789999999999987   99999999999999888874 3456


Q ss_pred             EEEEEcCCCCEEEEcc-cCCeEEEEeCCcceeeceEEEeccc---------eeEecCCC--eEEEec-CCCeEEEEecC-
Q 036585          106 VLLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRP---------AAAYDDQG--LVFGYE-KGPLDIFSVGG-  171 (304)
Q Consensus       106 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~-~~~~~~~~~~~-  171 (304)
                      .++++++||++++++. ..+.+.++|.++.+.+..+......         .+..++..  .++... .+.+.+.+... 
T Consensus        81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            8899999999988775 6899999999998888776543211         12222322  222222 23333332221 


Q ss_pred             ---------CCCCceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeC-------------C-------------
Q 036585          172 ---------DISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVK-------------P-------------  215 (304)
Q Consensus       172 ---------~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~-------------~-------------  215 (304)
                               .........|+|++++++++ ..+..|-++|.++++....+...             +             
T Consensus       161 ~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~  240 (369)
T PF02239_consen  161 KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGY  240 (369)
T ss_dssp             SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSS
T ss_pred             cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccc
Confidence                     22345668899999987765 45668888888777655443210             0             


Q ss_pred             --------------------------CCCCcceEEEEcCCCcEEEEe----cCCCcEEEEecCCCceeeeeecc-CCCCc
Q 036585          216 --------------------------VSRNSTLEASFSPEGMFVISG----SGDGSVHAWSVRSGKEVASWMSF-DTEPP  264 (304)
Q Consensus       216 --------------------------~~~~~i~~~~~s~~~~~l~~~----~~dg~i~v~d~~~~~~~~~~~~~-~~~i~  264 (304)
                                                ....+ ..+.-+|+++++++.    ...+.|.++|.++.+.+..+... ...+.
T Consensus       241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~  319 (369)
T PF02239_consen  241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVV  319 (369)
T ss_dssp             SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EE
T ss_pred             eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEe
Confidence                                      00111 336778999999988    45578999999999877777432 33588


Q ss_pred             eEEeCCCCcEEEEecCc----eEEeccCC
Q 036585          265 VIKWAPGSLMFVTGSSE----LSFWIPDL  289 (304)
Q Consensus       265 ~~~~~~~~~~l~s~~~d----~~iw~~~~  289 (304)
                      .+.|+++|+.+..+..+    +.+||-..
T Consensus       320 h~ef~~dG~~v~vS~~~~~~~i~v~D~~T  348 (369)
T PF02239_consen  320 HMEFNPDGKEVWVSVWDGNGAIVVYDAKT  348 (369)
T ss_dssp             EEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred             ccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence            99999999987776655    66666544

...

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=9.2e-18  Score=132.60  Aligned_cols=224  Identities=17%  Similarity=0.182  Sum_probs=163.4

Q ss_pred             ccceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCc----------ceeeeecccccceeEEEEccCCCeEEE
Q 036585            8 REDKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAA----------TCLKTINSKKYGVDLVCFTSHPTTVIY   74 (304)
Q Consensus         8 ~~~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~   74 (304)
                      -+...+++.|.+.   +...+.+..+++|+-||+|+.|++...          .....+.||++.|..+++++....|++
T Consensus       334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls  413 (577)
T KOG0642|consen  334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS  413 (577)
T ss_pred             eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence            3556778889888   556678999999999999999965421          234567899999999999999999999


Q ss_pred             EecCCCCCceEEEEccCceeeeeccccc--ccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEec
Q 036585           75 SSKNGWDESLRLLSLHDNKYSRYFKGHH--DRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYD  151 (304)
Q Consensus        75 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  151 (304)
                      ++.   ||++++|+.....+ .++....  +.-.++.+-... ...++...-+.--+++++..+....+.....+..   
T Consensus       414 cs~---DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~---  486 (577)
T KOG0642|consen  414 CSS---DGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP---  486 (577)
T ss_pred             ecC---CceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc---
Confidence            999   99999999877665 3343222  233555554332 2223322223333334443333333322111100   


Q ss_pred             CCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc
Q 036585          152 DQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  231 (304)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  231 (304)
                                         .....+..+.++|.+.+.+++..|+.|+++|..+++++....   .|...++++++.|+|.
T Consensus       487 -------------------~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~---a~~~svtslai~~ng~  544 (577)
T KOG0642|consen  487 -------------------RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV---AHKDSVTSLAIDPNGP  544 (577)
T ss_pred             -------------------cccCccceEEecCCCCeeEecccCCceecccccccccchhee---eccceecceeecCCCc
Confidence                               112456778899999999999999999999999999999888   6889999999999999


Q ss_pred             EEEEecCCCcEEEEecCCCceeeeeeccC
Q 036585          232 FVISGSGDGSVHAWSVRSGKEVASWMSFD  260 (304)
Q Consensus       232 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  260 (304)
                      +|++++.|+.+++|.+....++.....|.
T Consensus       545 ~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  545 YLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             eEEeecCCceeehhhccchheeecccccc
Confidence            99999999999999998877776665554

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=2.2e-19  Score=147.95  Aligned_cols=211  Identities=15%  Similarity=0.261  Sum_probs=161.0

Q ss_pred             ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEE
Q 036585           48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL  127 (304)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  127 (304)
                      +.+..+.+|...|+|+.|...|.++++++.   |..++||..+++.+.....+|.+.|+.++.+.+..++++++.|..|+
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsd---d~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSD---DRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR  257 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCc---cceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence            345567789999999999999999999999   99999999999999999999999999999999888999999999999


Q ss_pred             EEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC--
Q 036585          128 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG--  205 (304)
Q Consensus       128 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--  205 (304)
                      +|.+..+.++..+.                             +|++.|++++|+|-.    +.+.||++++||.+-.  
T Consensus       258 vWrl~~~~pvsvLr-----------------------------ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~  304 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLR-----------------------------GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPR  304 (1113)
T ss_pred             EEecCCCchHHHHh-----------------------------ccccceeeeccCccc----cCCCCCceEecccccccc
Confidence            99999998887775                             788999999999954    7788999999997611  


Q ss_pred             ------------ceeEEEEeC-------------CCCCCcceEEEEcCCCc-----------EEEEecCCCcEEEEecCC
Q 036585          206 ------------TLLSTYNVK-------------PVSRNSTLEASFSPEGM-----------FVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       206 ------------~~~~~~~~~-------------~~~~~~i~~~~~s~~~~-----------~l~~~~~dg~i~v~d~~~  249 (304)
                                  .....+...             ........+++|....-           +.+++-.+-.+.+|++.+
T Consensus       305 ~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~  384 (1113)
T KOG0644|consen  305 IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT  384 (1113)
T ss_pred             ccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc
Confidence                        011111000             00011122223332222           333333455688999999


Q ss_pred             CceeeeeeccCCCCceEEeCCCC-cEEEEecCc--eEEecc-CCccccc
Q 036585          250 GKEVASWMSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIP-DLSKLGA  294 (304)
Q Consensus       250 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~-~~~~~~~  294 (304)
                      |.+...+.+|...+..+.++|-+ +...+++.|  ..||++ +...++.
T Consensus       385 g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~  433 (1113)
T KOG0644|consen  385 GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKH  433 (1113)
T ss_pred             chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCccee
Confidence            99999999999999999999955 555677888  788876 3434433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=5.4e-16  Score=128.31  Aligned_cols=214  Identities=10%  Similarity=0.016  Sum_probs=144.5

Q ss_pred             eeEeecccCcEEEEeeC---CCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           19 EILQSMEVGIYLVTASD---DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      ....++|||+.|+..+.   +..|.+||+.+++.. .+..+.+.+...+|+|+|+.|+..........|++||+.+++. 
T Consensus       205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-  282 (435)
T PRK05137        205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-  282 (435)
T ss_pred             EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-
Confidence            34678999999888764   467999999887653 4445556777899999999887654421134588889887765 


Q ss_pred             eecccccccEEEEEEcCCCCEEEEccc-CC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585           96 RYFKGHHDRVVLLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD  172 (304)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (304)
                      ..+..+........|+|||+.++..+. +|  .|+++|+..+.......                              .
T Consensus       283 ~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~------------------------------~  332 (435)
T PRK05137        283 TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF------------------------------G  332 (435)
T ss_pred             EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec------------------------------C
Confidence            445556666778999999998877653 33  67888876554332211                              1


Q ss_pred             CCCceEEEEecCCcEEEEeeCC---CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC------CcEE
Q 036585          173 ISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD------GSVH  243 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~  243 (304)
                      ...+....|+|+|+.++....+   ..|.+||+..+.. ..+.    ....+....|+|||+.|+..+.+      ..++
T Consensus       333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt----~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~  407 (435)
T PRK05137        333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT----SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY  407 (435)
T ss_pred             CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc----CCCCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence            2334567899999999886643   3688899765543 3333    22346678999999988765432      3588


Q ss_pred             EEecCCCceeeeeeccCCCCceEEeCCC
Q 036585          244 AWSVRSGKEVASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       244 v~d~~~~~~~~~~~~~~~~i~~~~~~~~  271 (304)
                      ++|+..+.. ..+. ..+.+...+|+|-
T Consensus       408 ~~dl~g~~~-~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        408 TVDLTGRNE-REVP-TPGDASDPAWSPL  433 (435)
T ss_pred             EEECCCCce-EEcc-CCCCccCcccCCC
Confidence            888865544 4444 3445677788873

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=7.4e-17  Score=122.61  Aligned_cols=216  Identities=14%  Similarity=0.123  Sum_probs=162.5

Q ss_pred             eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC------ceeeeecc-cccccEEEEEEcCCCCEEEEcccC
Q 036585           51 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD------NKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLD  123 (304)
Q Consensus        51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d  123 (304)
                      +.+.+|.+.|+++.|+.++.+|++|+.   |..+++|.+..      .+++.... .|...|.|++|......+++|..+
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGD---D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGD---DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCC---cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            346689999999999999999999998   99999999864      35555544 355899999999988999999999


Q ss_pred             CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC
Q 036585          124 RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  203 (304)
Q Consensus       124 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  203 (304)
                      ++|...|+++.+.+..+...                           ...+.|..+..+|..+.|++.+.++.|.+||.+
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~---------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R  179 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANEN---------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR  179 (609)
T ss_pred             ceeEeeecccceeeeeeccc---------------------------CcccceeecccCCCCceEEEEecCceEEEEecc
Confidence            99999999998876655422                           344688999999999999999999999999998


Q ss_pred             CCc-eeEEEEeCCCCCCcceEEEEcCCC-cEEEEecCCCcEEEEecCCCce-eeee------eccCCCCceEEeCCCCcE
Q 036585          204 RGT-LLSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVHAWSVRSGKE-VASW------MSFDTEPPVIKWAPGSLM  274 (304)
Q Consensus       204 ~~~-~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~-~~~~------~~~~~~i~~~~~~~~~~~  274 (304)
                      ..+ ....+- ..........+.|+|.. .+|++.+..+-+-+||.+.... +...      +.....-.++.|+|.|..
T Consensus       180 d~~~~~~~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q  258 (609)
T KOG4227|consen  180 DRQNPISLVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ  258 (609)
T ss_pred             CCCCCCceee-ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe
Confidence            765 333222 22345667788999954 5778888888999999976432 2221      111222356789999998


Q ss_pred             EEEecCc--eEEeccCCcccccccc
Q 036585          275 FVTGSSE--LSFWIPDLSKLGAYVG  297 (304)
Q Consensus       275 l~s~~~d--~~iw~~~~~~~~~~~~  297 (304)
                      |.+--..  -.+|++-.+++-.+..
T Consensus       259 ~msiRR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  259 FMSIRRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             ehhhhccCCCEEeeeecccceeEec
Confidence            8877655  4566666655544443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.76  E-value=1.2e-18  Score=134.59  Aligned_cols=198  Identities=14%  Similarity=0.198  Sum_probs=169.7

Q ss_pred             ecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC
Q 036585           53 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR  132 (304)
Q Consensus        53 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  132 (304)
                      +....-+.+.+.++.+|.+++.++.   .|.|..+|..+++....+. -...|..+.|..+.++++++- ...++|||-.
T Consensus       125 L~l~eFGPY~~~ytrnGrhlllgGr---KGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~  199 (545)
T KOG1272|consen  125 LSLPEFGPYHLDYTRNGRHLLLGGR---KGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN  199 (545)
T ss_pred             ccccccCCeeeeecCCccEEEecCC---ccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCC
Confidence            3334456788999999999999999   9999999999999887776 556789999998887777764 5789999954


Q ss_pred             cceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585          133 AEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  212 (304)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  212 (304)
                       +..+..++                              ....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+.
T Consensus       200 -GtElHClk------------------------------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~  248 (545)
T KOG1272|consen  200 -GTELHCLK------------------------------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR  248 (545)
T ss_pred             -CcEEeehh------------------------------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHH
Confidence             44333333                              22567889999999999999999999999999999999888


Q ss_pred             eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          213 VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       213 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                         ...+.+..++-+|-+..+-+|..+|+|.+|.....+++..+..|.++|.+|++.++|+|++|++.|  ++|||+..
T Consensus       249 ---t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  249 ---TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN  324 (545)
T ss_pred             ---ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence               466788889999999999999999999999999999999999999999999999999999999999  99999853

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=9.7e-17  Score=120.57  Aligned_cols=206  Identities=13%  Similarity=0.238  Sum_probs=147.9

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc-cccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcce
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK-GHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEK  135 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~  135 (304)
                      ..+..++|+++-..++++..   |..|++||-.. +....++ ..+..|+|++|.|.+ +.|+.|.. +-|.+|......
T Consensus        99 ~dlr~~aWhqH~~~fava~n---ddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl  173 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATN---DDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL  173 (445)
T ss_pred             cceeeEeechhhhhhhhhcc---CcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence            35788999998888888887   99999999877 4444444 345689999999954 46777776 558999865432


Q ss_pred             eece-EEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCCceeEEEEe
Q 036585          136 CQGL-LRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNV  213 (304)
Q Consensus       136 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~  213 (304)
                      .... +.                ........+..-.+| .+|++++|.+||..+++++. +..|.+||..++..+.... 
T Consensus       174 n~~r~~~----------------~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-  235 (445)
T KOG2139|consen  174 NANRNIR----------------MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-  235 (445)
T ss_pred             ccccccc----------------cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-
Confidence            2111 11                011122223333344 68999999999999998875 6789999999988766553 


Q ss_pred             CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccC
Q 036585          214 KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPD  288 (304)
Q Consensus       214 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~  288 (304)
                        ...+.+.-+.||||+.+|+++.-|+..++|+..............+.|...+|+|+|++|..+... -++|.+.
T Consensus       236 --~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~  309 (445)
T KOG2139|consen  236 --KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLT  309 (445)
T ss_pred             --cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence              356778889999999999999999999999655433333444455689999999999877655544 6666553

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.75  E-value=7.9e-16  Score=132.12  Aligned_cols=239  Identities=15%  Similarity=0.205  Sum_probs=168.0

Q ss_pred             ecccCcEEEEeeCCCeEEEEecCCc-------ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc--e
Q 036585           23 SMEVGIYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--K   93 (304)
Q Consensus        23 ~~~~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~--~   93 (304)
                      ..+.+.++++||.||+|++|+....       +...++......+.++.+.+.+..+++++.   ||.|++.++.-.  +
T Consensus      1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~---DG~v~~~~id~~~~~ 1133 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK---DGSVRVLRIDHYNVS 1133 (1431)
T ss_pred             cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC---CCeEEEEEccccccc
Confidence            3455699999999999999998632       223334434568999999999999999988   999999998752  1


Q ss_pred             -----eeeeccccc-ccE-EEEEEcC-CC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585           94 -----YSRYFKGHH-DRV-VLLSLCS-SK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL  164 (304)
Q Consensus        94 -----~~~~~~~~~-~~v-~~~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (304)
                           ..+....+. +.+ ..-+|.. .+ ..++.+...+.|..||++.....+.++.+                     
T Consensus      1134 ~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~--------------------- 1192 (1431)
T KOG1240|consen 1134 KRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ--------------------- 1192 (1431)
T ss_pred             cceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC---------------------
Confidence                 112222222 223 3333432 23 37888888899999999988776665533                     


Q ss_pred             EEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC---CcEEEEe-c-CC
Q 036585          165 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE---GMFVISG-S-GD  239 (304)
Q Consensus       165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~-~-~d  239 (304)
                            ...+.|++++.+|.+.++++|+..|.+.+||++-+.++..+..  .+..++..+..+|-   ....+++ + ..
T Consensus      1193 ------~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~--P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1193 ------LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH--PARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred             ------ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccC--cccCCcceEEeeccCCCCceEEEecccCC
Confidence                  2347899999999999999999999999999999988888875  34577888877773   2444444 4 57


Q ss_pred             CcEEEEecCCCceeeeeecc-------------------CCCCceEEeCCCCcEEEEecCc--eEEeccCCcccc
Q 036585          240 GSVHAWSVRSGKEVASWMSF-------------------DTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLG  293 (304)
Q Consensus       240 g~i~v~d~~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~  293 (304)
                      +.|.+|++.+|.+...+-..                   .-+.....+..-+..+.+|+.|  |+.||......-
T Consensus      1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            88999999988665444211                   1111222333345677888888  899988665544

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.75  E-value=2.9e-17  Score=118.28  Aligned_cols=147  Identities=16%  Similarity=0.229  Sum_probs=115.8

Q ss_pred             eEEEEecCCCCCceEEEEccCce----------eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceE
Q 036585           71 TVIYSSKNGWDESLRLLSLHDNK----------YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL  140 (304)
Q Consensus        71 ~l~~~~~~~~d~~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  140 (304)
                      .++.++..  +|.+.+||+.++.          .......|.++|.++.|.+.-..=++|+.+..+..|++........+
T Consensus       166 ~lllaGyE--sghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  166 FLLLAGYE--SGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             EEEEEecc--CCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence            34444443  9999999999873          33344579999999999876666678888888999988654221111


Q ss_pred             EEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCc
Q 036585          141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  220 (304)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  220 (304)
                      ...                         +.-....+..+.+-||++.+++++.|++|++|..++.+++..+.   .|...
T Consensus       244 ~~e-------------------------~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk---yHsag  295 (323)
T KOG0322|consen  244 RKE-------------------------ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK---YHSAG  295 (323)
T ss_pred             cce-------------------------EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh---hhhcc
Confidence            100                         00122467789999999999999999999999999999999998   68899


Q ss_pred             ceEEEEcCCCcEEEEecCCCcEEEEec
Q 036585          221 TLEASFSPEGMFVISGSGDGSVHAWSV  247 (304)
Q Consensus       221 i~~~~~s~~~~~l~~~~~dg~i~v~d~  247 (304)
                      |++++|+|+...+|+++.|+.|.+|++
T Consensus       296 vn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  296 VNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999986

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=5e-15  Score=122.77  Aligned_cols=220  Identities=12%  Similarity=0.069  Sum_probs=143.1

Q ss_pred             eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585           38 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF  117 (304)
Q Consensus        38 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  117 (304)
                      .|.++|.+.++ .+.+..+...+....|+|+++.|+..+.......|.+||+.+++... +....+.+....|+|+|+.|
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            47777876544 44555566788999999999999887753223579999998876433 33233445678999999977


Q ss_pred             EE-cccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-
Q 036585          118 IS-GSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-  193 (304)
Q Consensus       118 ~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  193 (304)
                      +. .+.++  .|++||+.++......                              .+........|+|||+.++..+. 
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt------------------------------~~~~~~~~~~~spDg~~i~f~s~~  307 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVT------------------------------NHPAIDTEPFWGKDGRTLYFTSDR  307 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEcc------------------------------cCCCCcCCeEECCCCCEEEEEECC
Confidence            64 44444  6888898876543221                              12223456789999998876654 


Q ss_pred             CC--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-C--cEEEEecCCCceeeeeeccCCCCceEEe
Q 036585          194 EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-G--SVHAWSVRSGKEVASWMSFDTEPPVIKW  268 (304)
Q Consensus       194 dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~i~~~~~  268 (304)
                      +|  .|+++|+.+++......    .........|+|||++|+..+.+ +  .|.++|+.+++. ..+. .........|
T Consensus       308 ~g~~~iy~~d~~~g~~~~lt~----~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt-~~~~~~~p~~  381 (430)
T PRK00178        308 GGKPQIYKVNVNGGRAERVTF----VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT-DTSLDESPSV  381 (430)
T ss_pred             CCCceEEEEECCCCCEEEeec----CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEcc-CCCCCCCceE
Confidence            33  68888887776433221    12233457899999998876543 3  588999988764 3332 2223345689


Q ss_pred             CCCCcEEEEecCc-----eEEeccCCcccccc
Q 036585          269 APGSLMFVTGSSE-----LSFWIPDLSKLGAY  295 (304)
Q Consensus       269 ~~~~~~l~s~~~d-----~~iw~~~~~~~~~~  295 (304)
                      +|||++++..+.+     +.+++.+.+....+
T Consensus       382 spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l  413 (430)
T PRK00178        382 APNGTMLIYATRQQGRGVLMLVSINGRVRLPL  413 (430)
T ss_pred             CCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence            9999988877654     44445554444333

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.75  E-value=3.6e-14  Score=111.14  Aligned_cols=249  Identities=13%  Similarity=0.086  Sum_probs=169.8

Q ss_pred             CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEec---------CCCCCceEEEEccCceeeeeccccc-----
Q 036585           37 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK---------NGWDESLRLLSLHDNKYSRYFKGHH-----  102 (304)
Q Consensus        37 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~~~d~~i~vwd~~~~~~~~~~~~~~-----  102 (304)
                      ++|.+.|..+++.+.++.....+- .+ ++||++.++++..         .  +..|.+||..+.+.+..+.-..     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~--~d~V~v~D~~t~~~~~~i~~p~~p~~~  102 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKR--TDYVEVIDPQTHLPIADIELPEGPRFL  102 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCC--CCEEEEEECccCcEEeEEccCCCchhh
Confidence            789999999999998887654333 34 9999999988876         4  8899999999999887776321     


Q ss_pred             --ccEEEEEEcCCCCEEEEcc-c-CCeEEEEeCCcceeeceEEEeccc-eeEecCCCeEEEecCCCeEEEEecCC-----
Q 036585          103 --DRVVLLSLCSSKDCFISGS-L-DRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFGYEKGPLDIFSVGGD-----  172 (304)
Q Consensus       103 --~~v~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----  172 (304)
                        .....++++|||++++... . +..|.+.|+.+++.+..+..+... ....++........++......+...     
T Consensus       103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~  182 (352)
T TIGR02658       103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI  182 (352)
T ss_pred             ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence              1234789999999888765 3 789999999999999888765533 23333333333333333333222110     


Q ss_pred             ---------CCCc-eEEEEec-CCcEEEEeeCCCeEEEEEcCCC-----ceeEEEEeCC----CCCCcceEEEEcCCCcE
Q 036585          173 ---------ISDA-NVVKFSN-DGRLMLLTTMEGHIHVLDSFRG-----TLLSTYNVKP----VSRNSTLEASFSPEGMF  232 (304)
Q Consensus       173 ---------~~~v-~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~----~~~~~i~~~~~s~~~~~  232 (304)
                               ..++ ..-.|.+ +|+++.+... |.|.+.|+...     +....+....    -..+...-++++|+++.
T Consensus       183 ~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~  261 (352)
T TIGR02658       183 KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR  261 (352)
T ss_pred             eeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence                     0000 0013455 8888777776 99999996443     2222222110    12233344999999998


Q ss_pred             EEEec----------CCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCc-EEEEecCc---eEEeccCCcc
Q 036585          233 VISGS----------GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL-MFVTGSSE---LSFWIPDLSK  291 (304)
Q Consensus       233 l~~~~----------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d---~~iw~~~~~~  291 (304)
                      ++...          ..+.|.++|.++++.+..+.. ...+..++++||++ +|++....   +.+.|....+
T Consensus       262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence            88743          225799999999999888863 45789999999999 77766532   8898886553

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=8.9e-16  Score=116.43  Aligned_cols=236  Identities=11%  Similarity=0.151  Sum_probs=166.7

Q ss_pred             cEEEEeeCCCeEEEEecCCcceeeee------cccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce----eeee
Q 036585           28 IYLVTASDDESIRLYDVTAATCLKTI------NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YSRY   97 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~----~~~~   97 (304)
                      +.+...+.|..+..+..........+      .....+|..++..  ...|+++-.   +|.+.+|....+.    ....
T Consensus        70 evl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~---sG~l~~~~~k~~d~hss~l~~  144 (412)
T KOG3881|consen   70 EVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVS---SGNLQVRHDKSGDLHSSKLIK  144 (412)
T ss_pred             eEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEec---CCcEEEEeccCCcccccccee
Confidence            34444445555666665554443332      2334455555543  335666665   9999999988442    2333


Q ss_pred             cccccccEEEEEEcCCCC-EEEEcccC--CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585           98 FKGHHDRVVLLSLCSSKD-CFISGSLD--RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS  174 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~-~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (304)
                      +..+ .++..+.-++... .+++|+..  ..+++||++..+.+..-+  ..+.-.          -+-.+.+        
T Consensus       145 la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK--NvpnD~----------L~LrVPv--------  203 (412)
T KOG3881|consen  145 LATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK--NVPNDR----------LGLRVPV--------  203 (412)
T ss_pred             eecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc--CCCCcc----------ccceeee--------
Confidence            3323 4566677776444 56668888  889999999875443322  111000          0001112        


Q ss_pred             CceEEEEecC--CcEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc
Q 036585          175 DANVVKFSND--GRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK  251 (304)
Q Consensus       175 ~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~  251 (304)
                      -++.+.|-+.  ...|++++.-+.+++||.+.+ +++..+.   ....+++++...|.++++++|..-+.+..||++.++
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd---~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k  280 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD---FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK  280 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec---cccCcceeeeecCCCcEEEEecccchhheecccCce
Confidence            2466888777  788999999999999999865 4555666   568899999999999999999999999999999999


Q ss_pred             eeee-eeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585          252 EVAS-WMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       252 ~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~  292 (304)
                      .+.. +.+..+.|++|..+|..+++++++-|  +||++.+.+++
T Consensus       281 l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  281 LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence            8777 78999999999999999999999999  99999988654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=8.7e-16  Score=116.48  Aligned_cols=208  Identities=14%  Similarity=0.112  Sum_probs=159.8

Q ss_pred             CcEEEEeeCCCeEEEEecCCcc----eeeeecccccceeEEEEccCCCeEEE-EecCCCC--CceEEEEccCceeeeecc
Q 036585           27 GIYLVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIY-SSKNGWD--ESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~~d--~~i~vwd~~~~~~~~~~~   99 (304)
                      ...|++|-.+|.+.+|..+.+.    .+..+..+ .++..|.-++..+.+++ |+.   .  ..+.+||+++.+++..-+
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGk---e~~n~lkiwdle~~~qiw~aK  190 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGK---ENINELKIWDLEQSKQIWSAK  190 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCch---hcccceeeeecccceeeeecc
Confidence            5578888889999999988432    33444444 36777877777666666 555   6  789999999886655433


Q ss_pred             cc---------cccEEEEEEcCC--CCEEEEcccCCeEEEEeCCccee-eceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585          100 GH---------HDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKC-QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF  167 (304)
Q Consensus       100 ~~---------~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (304)
                      ..         .-.++.+.|.+.  ...|++++.-+.+++||.+.++. +..+.                          
T Consensus       191 NvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd--------------------------  244 (412)
T KOG3881|consen  191 NVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD--------------------------  244 (412)
T ss_pred             CCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec--------------------------
Confidence            21         124578889887  77999999999999999986542 22222                          


Q ss_pred             EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEE-EEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEe
Q 036585          168 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS  246 (304)
Q Consensus       168 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d  246 (304)
                         -.+.+++++...|+++++++|..-|.+..||++.++.... +.   +..+.+.++..+|.++++++++-|..|||+|
T Consensus       245 ---~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k---g~tGsirsih~hp~~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  245 ---FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK---GITGSIRSIHCHPTHPVLASCGLDRYVRIHD  318 (412)
T ss_pred             ---cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC---CccCCcceEEEcCCCceEEeeccceeEEEee
Confidence               2346789999999999999999999999999999988876 55   6788999999999999999999999999999


Q ss_pred             cCCCceeeeeeccCCCCceEEeCCC
Q 036585          247 VRSGKEVASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       247 ~~~~~~~~~~~~~~~~i~~~~~~~~  271 (304)
                      +++.+++.... -...+++|.+.++
T Consensus       319 ~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  319 IKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             cccchhhhhhh-hhccccEEEecCC
Confidence            99977655442 3455677777654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.73  E-value=1.9e-16  Score=124.77  Aligned_cols=170  Identities=12%  Similarity=0.139  Sum_probs=125.7

Q ss_pred             ccCcEEEEeeCCCeEEEEecCCcceeeeec----ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc--------
Q 036585           25 EVGIYLVTASDDESIRLYDVTAATCLKTIN----SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--------   92 (304)
Q Consensus        25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~--------   92 (304)
                      +.+--++.|-.-|.+.+.|....+..+.+.    ..+..|+|+.|-|.++.++..+..  +|.+++||.+-.        
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~--sGnlyly~~~~~~~~t~p~~  260 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHA--SGNLYLYDKEIVCGATAPSY  260 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEe--cCceEEeeccccccCCCCcc
Confidence            335556667777788888865422211111    123689999999977665555442  999999976421        


Q ss_pred             ------e--------------eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecC
Q 036585           93 ------K--------------YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDD  152 (304)
Q Consensus        93 ------~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  152 (304)
                            .              ++..+.--.+.|...+|+|||++||+.+.||.+||+|..+.+....++.          
T Consensus       261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS----------  330 (636)
T KOG2394|consen  261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS----------  330 (636)
T ss_pred             cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh----------
Confidence                  0              0111112245788899999999999999999999999998776655431          


Q ss_pred             CCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC
Q 036585          153 QGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  228 (304)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~  228 (304)
                                         --+...|++|||||+++++|++|--|.||.+...+.+..-+   +|+..|..++|+|
T Consensus       331 -------------------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq---GHkSWVs~VaFDp  384 (636)
T KOG2394|consen  331 -------------------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ---GHKSWVSVVAFDP  384 (636)
T ss_pred             -------------------hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc---ccccceeeEeecc
Confidence                               12567899999999999999999999999999998888877   8999999999983

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.72  E-value=1.4e-13  Score=110.35  Aligned_cols=245  Identities=16%  Similarity=0.229  Sum_probs=161.7

Q ss_pred             ceeeEeecccCcEEEEeeC----CCeEEEEecCCc--c--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585           17 SEEILQSMEVGIYLVTASD----DESIRLYDVTAA--T--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   88 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~----d~~i~vw~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd   88 (304)
                      .+..+.+++++++|.+...    ++.|..|++...  +  .+.+..........++++|++++|+++...  +|.|.+++
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~--~g~v~v~~  115 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYG--GGSVSVFP  115 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETT--TTEEEEEE
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEcc--CCeEEEEE
Confidence            4556888899999998876    568999988754  2  333333234456789999999999999875  99999999


Q ss_pred             ccC-ceeeee---cc----------cccccEEEEEEcCCCCEEEEccc-CCeEEEEeCCccee--eceEEEeccceeEec
Q 036585           89 LHD-NKYSRY---FK----------GHHDRVVLLSLCSSKDCFISGSL-DRTVLLWDQRAEKC--QGLLRVQGRPAAAYD  151 (304)
Q Consensus        89 ~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~  151 (304)
                      +.. +.....   +.          .......++.++|+++++++... ...|.+|++.....  .......        
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~--------  187 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK--------  187 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE--------
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc--------
Confidence            986 332221   11          12245688999999998877542 34799999876542  1111100        


Q ss_pred             CCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee-CCCeEEEEEcC--CCcee--EEEEeCC---CCCCcceE
Q 036585          152 DQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSF--RGTLL--STYNVKP---VSRNSTLE  223 (304)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~--~~~~~--~~~~~~~---~~~~~i~~  223 (304)
                                        -......+.+.|+|+++++++.. .++.|.+|++.  +++..  ......+   ........
T Consensus       188 ------------------~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  249 (345)
T PF10282_consen  188 ------------------VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE  249 (345)
T ss_dssp             ------------------CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred             ------------------cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence                              01334568899999999887665 57889999988  44332  2222110   11225678


Q ss_pred             EEEcCCCcEEEEec-CCCcEEEEecC--CCce--eeeeeccCCCCceEEeCCCCcEEEEecCc---eEEeccCC
Q 036585          224 ASFSPEGMFVISGS-GDGSVHAWSVR--SGKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPDL  289 (304)
Q Consensus       224 ~~~s~~~~~l~~~~-~dg~i~v~d~~--~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~  289 (304)
                      ++++|||++|+++. ..+.|.+|++.  ++++  +..+.......+.++++|+|++|+++..+   +.+|.++.
T Consensus       250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            99999999988875 45689999993  3333  34444444557999999999999988766   88887753

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1.5e-15  Score=128.73  Aligned_cols=232  Identities=13%  Similarity=0.226  Sum_probs=164.9

Q ss_pred             ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccc---cccEEEEEEcC--CCCEEEEcccCCeEEEEeCCc
Q 036585           59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH---HDRVVLLSLCS--SKDCFISGSLDRTVLLWDQRA  133 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~  133 (304)
                      +...+.|+|-...++++..   ...|+|||.+.++....|..+   ...|+.+.+-.  |..++++++.||.|+||+--.
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~---r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADD---RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred             CCceeeecCCCceeEEcCC---cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence            4667889999999999987   789999999999887777643   34788888875  556899999999999997432


Q ss_pred             ce-----eeceEE-Ee--------ccceeEecC-CCeEE-EecCCCeEEEEecC----------CCCCceEEEEec-CCc
Q 036585          134 EK-----CQGLLR-VQ--------GRPAAAYDD-QGLVF-GYEKGPLDIFSVGG----------DISDANVVKFSN-DGR  186 (304)
Q Consensus       134 ~~-----~~~~~~-~~--------~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~----------~~~~v~~~~~~~-~~~  186 (304)
                      ..     .+.... ..        ....+.|.. .|.++ ..+...+++|+...          ....++++.-+. .|+
T Consensus      1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred             cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence            21     111110 00        011233332 23333 44466788887653          234556555433 468


Q ss_pred             EEEEeeCCCeEEEEEcCCCce---eEEEEeCCCCCCc--ceEEEEcCCCc-EEEEecCCCcEEEEecCCCce--eeeeec
Q 036585          187 LMLLTTMEGHIHVLDSFRGTL---LSTYNVKPVSRNS--TLEASFSPEGM-FVISGSGDGSVHAWSVRSGKE--VASWMS  258 (304)
Q Consensus       187 ~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~--i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~~--~~~~~~  258 (304)
                      .+++|..||.|++||.+....   +....   .|...  |..+.+.+.|- .|++|+.||.|++||++....  ...+..
T Consensus      1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R---~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYR---EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred             eEEEeecCCceEEeecccCCccccceeec---ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence            999999999999999886544   33333   45554  99999998665 499999999999999987422  222233


Q ss_pred             cC--C-CCceEEeCCCCcEEEEecCc-eEEeccCCccccccc
Q 036585          259 FD--T-EPPVIKWAPGSLMFVTGSSE-LSFWIPDLSKLGAYV  296 (304)
Q Consensus       259 ~~--~-~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~~~~~~  296 (304)
                      |-  + ..+++..+++...+|+|+.. ++||+...+++..++
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccc
Confidence            32  3 58999999999999999977 999999998887665

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=6.2e-15  Score=116.92  Aligned_cols=263  Identities=14%  Similarity=0.267  Sum_probs=166.6

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEec-------CCCCCceEEEEccC
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-------NGWDESLRLLSLHD   91 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------~~~d~~i~vwd~~~   91 (304)
                      .....+++|+++|.+. +..++|++..++..+.+...-  .+.++.|+|.+.+|.+--.       ....-.+++|++++
T Consensus        38 ~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet  114 (566)
T KOG2315|consen   38 NVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET  114 (566)
T ss_pred             eeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence            3556677787777765 567999999888644433332  6899999999998876421       01134577999998


Q ss_pred             ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec-eEEEe---------------------------
Q 036585           92 NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQ---------------------------  143 (304)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~---------------------------  143 (304)
                      +.....++.....-++..|++|..+.+- -..+.+.+|++...+... .+...                           
T Consensus       115 ~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP  193 (566)
T KOG2315|consen  115 GVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP  193 (566)
T ss_pred             ceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence            6554444332222256666665542221 122345555544321110 11100                           


Q ss_pred             -------------------------ccceeEecCCC--eEE------------EecCCCeEEEEecC--------CCCCc
Q 036585          144 -------------------------GRPAAAYDDQG--LVF------------GYEKGPLDIFSVGG--------DISDA  176 (304)
Q Consensus       144 -------------------------~~~~~~~~~~~--~~~------------~~~~~~~~~~~~~~--------~~~~v  176 (304)
                                               ....+.|+..+  +++            -+....+.+..+++        ..++|
T Consensus       194 a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPV  273 (566)
T KOG2315|consen  194 ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPV  273 (566)
T ss_pred             cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCc
Confidence                                     11112222222  111            12223444444443        36899


Q ss_pred             eEEEEecCCcEEEE--eeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC---CCcEEEEecCCCc
Q 036585          177 NVVKFSNDGRLMLL--TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG---DGSVHAWSVRSGK  251 (304)
Q Consensus       177 ~~~~~~~~~~~l~~--~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~v~d~~~~~  251 (304)
                      .++.|+|+++.|++  |-+-..+.+||++ +.++..+     ..++-+++-|+|.|++|+.++-   -|.|-|||..+.+
T Consensus       274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df-----~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K  347 (566)
T KOG2315|consen  274 HDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF-----PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK  347 (566)
T ss_pred             eEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC-----CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence            99999999988776  4567789999975 4555554     3567778999999999988764   4789999999988


Q ss_pred             eeeeeeccCCCCceEEeCCCCcEEEEecCc--------eEEeccCCcccc
Q 036585          252 EVASWMSFDTEPPVIKWAPGSLMFVTGSSE--------LSFWIPDLSKLG  293 (304)
Q Consensus       252 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--------~~iw~~~~~~~~  293 (304)
                      ++..+....  -+-+.|+|||++++|+..-        ++||++.+..+.
T Consensus       348 ~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~  395 (566)
T KOG2315|consen  348 LIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH  395 (566)
T ss_pred             hccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence            888876443  3567899999999888643        999999887764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=2.2e-14  Score=118.62  Aligned_cols=221  Identities=11%  Similarity=0.083  Sum_probs=139.4

Q ss_pred             eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585           38 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF  117 (304)
Q Consensus        38 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  117 (304)
                      .|.++|....+. +.+..+...+....|+|||+.|+..+.......|++||+.+++... +....+......|+|||+.|
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            566778654433 4455566688899999999999988753113468899998876432 22223334578999999977


Q ss_pred             EE-cccCCe--EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-
Q 036585          118 IS-GSLDRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-  193 (304)
Q Consensus       118 ~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  193 (304)
                      +. .+.++.  |+++|+.+++.....                              .+.......+|+|||+.++..+. 
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt------------------------------~~~~~~~~p~wSpDG~~I~f~s~~  326 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRIT------------------------------RHRAIDTEPSWHPDGKSLIFTSER  326 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECc------------------------------cCCCCccceEECCCCCEEEEEECC
Confidence            65 455564  777788766543221                              12234456899999998877654 


Q ss_pred             CC--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC-CC--cEEEEecCCCceeeeeeccCCCCceEEe
Q 036585          194 EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DG--SVHAWSVRSGKEVASWMSFDTEPPVIKW  268 (304)
Q Consensus       194 dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~i~~~~~  268 (304)
                      ++  .|+++|+.+++... +..   ........+|+|||++|+..+. ++  .|.++|+.+++.. .+... .......|
T Consensus       327 ~g~~~Iy~~dl~~g~~~~-Lt~---~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~  400 (448)
T PRK04792        327 GGKPQIYRVNLASGKVSR-LTF---EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSV  400 (448)
T ss_pred             CCCceEEEEECCCCCEEE-Eec---CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceE
Confidence            33  57777887776543 221   2222345789999999877654 33  4666788777643 33222 12234589


Q ss_pred             CCCCcEEEEecCc-----eEEeccCCccccccc
Q 036585          269 APGSLMFVTGSSE-----LSFWIPDLSKLGAYV  296 (304)
Q Consensus       269 ~~~~~~l~s~~~d-----~~iw~~~~~~~~~~~  296 (304)
                      +|||+.|+..+.+     +.+++.+......+.
T Consensus       401 spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~  433 (448)
T PRK04792        401 APNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP  433 (448)
T ss_pred             CCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence            9999988776654     444555655544443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.72  E-value=1.5e-14  Score=115.87  Aligned_cols=232  Identities=14%  Similarity=0.182  Sum_probs=139.9

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      .+.+++||+++++++.||.|.++|+.+++.+.+++... ....+++++||++++++...  ++.+.++|.++.+.++.+.
T Consensus        41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~--~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYE--PGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEE--TTEEEEEETTT--EEEEEE
T ss_pred             EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecC--CCceeEeccccccceeecc
Confidence            36688999999999999999999999999999998655 56789999999999988764  8999999999988877664


Q ss_pred             cc-------cccEEEEEEcCCCCEEEEccc-CCeEEEEeCCcceeece--EEEecc-ceeEecCCCeEE-E--ecCCCe-
Q 036585          100 GH-------HDRVVLLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGL--LRVQGR-PAAAYDDQGLVF-G--YEKGPL-  164 (304)
Q Consensus       100 ~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~--~~~~~~-~~~~~~~~~~~~-~--~~~~~~-  164 (304)
                      ..       ...+.++..+|....++..-. .+.|.+.|....+....  +..... .-..+++++.++ .  .....+ 
T Consensus       118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~  197 (369)
T PF02239_consen  118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA  197 (369)
T ss_dssp             --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred             cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeE
Confidence            22       235666666776664544433 36666666555432221  111111 112333333221 0  000000 


Q ss_pred             ---------------------------------EEEE------------------------------ecCCCCCceEEEE
Q 036585          165 ---------------------------------DIFS------------------------------VGGDISDANVVKF  181 (304)
Q Consensus       165 ---------------------------------~~~~------------------------------~~~~~~~v~~~~~  181 (304)
                                                       .+|.                              +...... .-+..
T Consensus       198 viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t  276 (369)
T PF02239_consen  198 VIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT  276 (369)
T ss_dssp             EEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-
T ss_pred             EEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeec
Confidence                                             0011                              1111122 44677


Q ss_pred             ecCCcEEEEe----eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC--CCcEEEEecCCCceeee
Q 036585          182 SNDGRLMLLT----TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG--DGSVHAWSVRSGKEVAS  255 (304)
Q Consensus       182 ~~~~~~l~~~----~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~v~d~~~~~~~~~  255 (304)
                      +|+++++.+.    ...++|.++|.++.+...++..  .....+..+.|+++|+++..+..  ++.|.+||.++.+.+.+
T Consensus       277 hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~--~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~  354 (369)
T PF02239_consen  277 HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP--GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR  354 (369)
T ss_dssp             -TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH--HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             CCCCccEEeeccCCCCCceEEEEECcCcceeEEEec--cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence            9999999987    4457999999999877666642  12234888999999998776654  34699999999999888


Q ss_pred             ee
Q 036585          256 WM  257 (304)
Q Consensus       256 ~~  257 (304)
                      ++
T Consensus       355 i~  356 (369)
T PF02239_consen  355 IP  356 (369)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.1e-14  Score=120.51  Aligned_cols=212  Identities=17%  Similarity=0.126  Sum_probs=137.5

Q ss_pred             eEeecccCcEEEEeeCC-C--eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCC--ceEEEEccCcee
Q 036585           20 ILQSMEVGIYLVTASDD-E--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE--SLRLLSLHDNKY   94 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d-~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~--~i~vwd~~~~~~   94 (304)
                      ...++|||+.|+..+.+ +  .|.+||+.+++... +..........+|+||++.|+.....  ++  .|+++|+.+++.
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~--~g~~~Iy~~dl~tg~~  298 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSK--DGQPEIYVVDIATKAL  298 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeC--CCCeEEEEEECCCCCe
Confidence            46899999988876543 2  58888988776432 22222234578999999988876442  44  588889887764


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEccc-CC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG  171 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (304)
                      . .+..+........|+||++.++..+. ++  .|+++|+.+++..... ..                            
T Consensus       299 ~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~----------------------------  348 (448)
T PRK04792        299 T-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FE----------------------------  348 (448)
T ss_pred             E-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cC----------------------------
Confidence            3 34445556678899999998766543 33  5666677665432221 01                            


Q ss_pred             CCCCceEEEEecCCcEEEEeeCC-C--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC-CC--cEEEE
Q 036585          172 DISDANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DG--SVHAW  245 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~~~d-g--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~v~  245 (304)
                       .......+|+|||++++..+.+ +  .|.++|+.+++... +..   . .......|+|||+.|+..+. ++  .++++
T Consensus       349 -g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~---~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~  422 (448)
T PRK04792        349 -GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS---T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAV  422 (448)
T ss_pred             -CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC---C-CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence             0112346899999988876553 3  56778888776432 221   1 11224589999998876553 33  37777


Q ss_pred             ecCCCceeeeeeccCCCCceEEeCCC
Q 036585          246 SVRSGKEVASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       246 d~~~~~~~~~~~~~~~~i~~~~~~~~  271 (304)
                      +. +++....+..+.+.+...+|+|-
T Consensus       423 ~~-~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        423 SI-DGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             EC-CCCceEECcCCCCCcCCCccCCC
Confidence            86 56666667666777888899873

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.70  E-value=1.2e-14  Score=120.39  Aligned_cols=212  Identities=16%  Similarity=0.124  Sum_probs=139.9

Q ss_pred             eEeecccCcEEEEeeCC---CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           20 ILQSMEVGIYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ...++|+|++|+.++.+   ..|++||+.+++... +..+...+.+++|+|+++.|+.......+..|++||+.+++...
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~  272 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR  272 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE
Confidence            45689999999987654   479999998876543 33344566778999999988766542114568999998775433


Q ss_pred             ecccccccEEEEEEcCCCCEEEEccc-CC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI  173 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                       +..+........|+|+++.|+..+. ++  .|+++|+.+++.....                              .+.
T Consensus       273 -l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~------------------------------~~~  321 (417)
T TIGR02800       273 -LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT------------------------------FRG  321 (417)
T ss_pred             -CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee------------------------------cCC
Confidence             3335445567789999998876554 33  5777787655432111                              122


Q ss_pred             CCceEEEEecCCcEEEEeeCCC---eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC---cEEEEec
Q 036585          174 SDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---SVHAWSV  247 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~v~d~  247 (304)
                      .....+.|+|+|++++.++.++   .|.+||+.++.... +.    .........|+||+++|+..+.++   .+++.+.
T Consensus       322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~----~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT----DTGLDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc----CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            3456688999999999888776   89999988755422 22    112234568999999888776543   3556554


Q ss_pred             CCCceeeeeeccCCCCceEEeC
Q 036585          248 RSGKEVASWMSFDTEPPVIKWA  269 (304)
Q Consensus       248 ~~~~~~~~~~~~~~~i~~~~~~  269 (304)
                       +++....+..+.+.+..+.|+
T Consensus       397 -~g~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       397 -DGRFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             -CCceeeECCCCCCCcCCCCCC
Confidence             455555555445556665553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=3.7e-14  Score=116.41  Aligned_cols=225  Identities=13%  Similarity=0.092  Sum_probs=136.0

Q ss_pred             CeEEEEecCCcceeeeecccccceeEEEEccCCCe--EEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCC
Q 036585           37 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSK  114 (304)
Q Consensus        37 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  114 (304)
                      ..|.+.|...++. +.+.........-.|+|||+.  ++..+.......|.+.++.+++..+. ....+......|+|||
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG  242 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK  242 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence            3577777765443 344445556778899999986  33344321145688889887764332 2244455678999999


Q ss_pred             CEEEEccc-----CCeEEEEeCCcce--eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcE
Q 036585          115 DCFISGSL-----DRTVLLWDQRAEK--CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRL  187 (304)
Q Consensus       115 ~~l~~~~~-----dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  187 (304)
                      +.|+..+.     +..+..|++..+.  ....+.                            ..........+|+|||+.
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt----------------------------~~~~~~~~~p~wSPDG~~  294 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL----------------------------NEAFGTQGNPSFSPDGTR  294 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceEee----------------------------cCCCCCcCCeEECCCCCE
Confidence            98876542     2234446655431  101110                            011123356799999998


Q ss_pred             EEEee-CCCe--EEEEEcCC-CceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEecCCCceeeeeeccC
Q 036585          188 MLLTT-MEGH--IHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSVRSGKEVASWMSFD  260 (304)
Q Consensus       188 l~~~~-~dg~--i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~  260 (304)
                      |+..+ .+|.  |+++++.. +.....+.   .....+....|||||++|+..+.+   ..|++||+.+++.. .+....
T Consensus       295 Laf~s~~~g~~~ly~~~~~~~g~~~~~lt---~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~  370 (428)
T PRK01029        295 LVFVSNKDGRPRIYIMQIDPEGQSPRLLT---KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSP  370 (428)
T ss_pred             EEEEECCCCCceEEEEECcccccceEEec---cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCC
Confidence            87765 4564  44445432 22233333   233456778999999988866433   36999999888764 333334


Q ss_pred             CCCceEEeCCCCcEEEEecCc-----eEEeccCCcccccc
Q 036585          261 TEPPVIKWAPGSLMFVTGSSE-----LSFWIPDLSKLGAY  295 (304)
Q Consensus       261 ~~i~~~~~~~~~~~l~s~~~d-----~~iw~~~~~~~~~~  295 (304)
                      ..+....|+|||+.|+..+.+     +.+++++..+...+
T Consensus       371 ~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        371 ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI  410 (428)
T ss_pred             CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            467789999999987754332     66667666555444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.70  E-value=3.1e-15  Score=128.60  Aligned_cols=224  Identities=14%  Similarity=0.177  Sum_probs=161.5

Q ss_pred             EecCCcceeeeecccccceeEEEEccCC-CeEEEEecCCCCCceEEEEccCc-------eeeeecccccccEEEEEEcCC
Q 036585           42 YDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHDN-------KYSRYFKGHHDRVVLLSLCSS  113 (304)
Q Consensus        42 w~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~  113 (304)
                      |+. .|..+..+..|...+..++.++.. .++++|+.   ||+|++|+...-       +...++......+.++.+.+.
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~---DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSD---DGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecC---CceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence            664 478889999999999999888765 89999998   999999998642       222333334568899999999


Q ss_pred             CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec-CC-cEEEEe
Q 036585          114 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN-DG-RLMLLT  191 (304)
Q Consensus       114 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~l~~~  191 (304)
                      ++.+|.++.||.|++.++.............                    ++.+.......+..-+|.. .+ ..++.+
T Consensus      1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~--------------------ri~n~~~~g~vv~m~a~~~~~~S~~lvy~ 1169 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQV--------------------RIPNLKKDGVVVSMHAFTAIVQSHVLVYA 1169 (1431)
T ss_pred             CCeEEEEcCCCeEEEEEccccccccceeeee--------------------ecccccCCCceEEeecccccccceeEEEE
Confidence            9999999999999999987642211111000                    0000111111222223322 22 367788


Q ss_pred             eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee-ccCCCCceEEeCC
Q 036585          192 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM-SFDTEPPVIKWAP  270 (304)
Q Consensus       192 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~  270 (304)
                      ...+.|..||+++.....+.+... ..+.|++++.+|.+++++.|+..|.+.+||++-+.++..+. ++..+|+.+..+|
T Consensus      1170 T~~~~iv~~D~r~~~~~w~lk~~~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1170 TDLSRIVSWDTRMRHDAWRLKNQL-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred             EeccceEEecchhhhhHHhhhcCc-cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence            889999999999888777776553 45789999999999999999999999999999888888773 4557888888776


Q ss_pred             C---CcEEEEecC-c---eEEeccCCc
Q 036585          271 G---SLMFVTGSS-E---LSFWIPDLS  290 (304)
Q Consensus       271 ~---~~~l~s~~~-d---~~iw~~~~~  290 (304)
                      -   ....++++. .   +.+|+....
T Consensus      1249 ~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1249 TYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             cCCCCceEEEecccCCCceeeeecccC
Confidence            3   345555554 2   999988765

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=2.9e-14  Score=118.24  Aligned_cols=214  Identities=12%  Similarity=0.110  Sum_probs=139.8

Q ss_pred             eEeecccCcEEEEeeCC---CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           20 ILQSMEVGIYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ...++|+|+.|+..+.+   ..|.+||+.+++... +....+.+....|+|+|+.|+.......+..|++||+.+++.. 
T Consensus       203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-  280 (430)
T PRK00178        203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-  280 (430)
T ss_pred             eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence            45789999998876644   368899998876533 3323334557899999999886554211347888899887644 


Q ss_pred             ecccccccEEEEEEcCCCCEEEEccc-CC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI  173 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                      .+..+........|+|+++.++..+. ++  .|+++|+.+++...... .                             .
T Consensus       281 ~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~-----------------------------~  330 (430)
T PRK00178        281 RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-V-----------------------------G  330 (430)
T ss_pred             EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-C-----------------------------C
Confidence            34445555677899999997766553 33  57777776665322210 0                             0


Q ss_pred             CCceEEEEecCCcEEEEeeCC-C--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEec
Q 036585          174 SDANVVKFSNDGRLMLLTTME-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSV  247 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~d-g--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~  247 (304)
                      .......|+|+|++++..+.+ +  .|.++|+.+++... +..    ........|+|||+.++..+.+   ..|.++++
T Consensus       331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~----~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD----TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC----CCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            112346899999998877653 3  58899998876432 321    1122246899999998776543   34777777


Q ss_pred             CCCceeeeeeccCCCCceEEeCCC
Q 036585          248 RSGKEVASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       248 ~~~~~~~~~~~~~~~i~~~~~~~~  271 (304)
                      . +.....+..+.+.+...+|+|-
T Consensus       406 ~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        406 N-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             C-CCceEECcCCCCCcCCCccCCC
Confidence            4 4444555556667788888874

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.69  E-value=7e-14  Score=104.28  Aligned_cols=254  Identities=11%  Similarity=0.164  Sum_probs=165.4

Q ss_pred             EeecccCcE-EEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec-
Q 036585           21 LQSMEVGIY-LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF-   98 (304)
Q Consensus        21 i~~~~~~~~-l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~-   98 (304)
                      +.+..+..+ |.....|+.|.+|++...+-...+.....++..++|||+|+.++..+.  .+-.|.+|.+.+.+....- 
T Consensus        54 ieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tse--F~lriTVWSL~t~~~~~~~~  131 (447)
T KOG4497|consen   54 IEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSE--FDLRITVWSLNTQKGYLLPH  131 (447)
T ss_pred             eeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeec--ceeEEEEEEeccceeEEecc
Confidence            556667655 445678889999999988888888888889999999999988877775  3999999999875432110 


Q ss_pred             -------------------------------------------c-------------------------------ccc-c
Q 036585           99 -------------------------------------------K-------------------------------GHH-D  103 (304)
Q Consensus        99 -------------------------------------------~-------------------------------~~~-~  103 (304)
                                                                 .                               -|. -
T Consensus       132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~l  211 (447)
T KOG4497|consen  132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL  211 (447)
T ss_pred             cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeecc
Confidence                                                       0                               011 1


Q ss_pred             cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEE----ec-----------------cceeEecCCC--------
Q 036585          104 RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----QG-----------------RPAAAYDDQG--------  154 (304)
Q Consensus       104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~-----------------~~~~~~~~~~--------  154 (304)
                      .+..++|+|.+++++.|+.|+.+|+.+--+-+....+-.    +.                 .....+.|..        
T Consensus       212 G~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~  291 (447)
T KOG4497|consen  212 GLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEE  291 (447)
T ss_pred             ceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcccc
Confidence            233455555566666666666665544322222111100    00                 0011111111        


Q ss_pred             --eEEEecCCCeEEEEec------CCCCCceEEEEecCCcEEEEeeC--CCeEEEEEcCCCceeEEEEeCCCCCCcceEE
Q 036585          155 --LVFGYEKGPLDIFSVG------GDISDANVVKFSNDGRLMLLTTM--EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  224 (304)
Q Consensus       155 --~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~  224 (304)
                        ..+......+.+..++      +....+.-++|++|..++++-..  -..+.+||++..+....+.    ...+|...
T Consensus       292 se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi----Qk~piraf  367 (447)
T KOG4497|consen  292 SETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI----QKHPIRAF  367 (447)
T ss_pred             chhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh----hccceeEE
Confidence              0011111122222222      22345677999999998887543  3579999998877666555    67889999


Q ss_pred             EEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585          225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      .|+|....|+.+.....+++|...-...+. .+...-.|..++|+-+|..++-.+.|
T Consensus       368 ~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kD  423 (447)
T KOG4497|consen  368 EWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKD  423 (447)
T ss_pred             EeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCC
Confidence            999998888888777789999976544333 34455789999999999999999999

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=2.2e-14  Score=113.87  Aligned_cols=268  Identities=14%  Similarity=0.202  Sum_probs=175.3

Q ss_pred             cceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCC--------CCCceEEE
Q 036585           16 LSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--------WDESLRLL   87 (304)
Q Consensus        16 ~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--------~d~~i~vw   87 (304)
                      ..+..++|+|-|.||+|-...| |.+|--++-..++.+. |. .|.-+.|||..++|++-+..-        ....++||
T Consensus       211 WTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  211 WTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             ceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence            3566799999999999999887 8999877666666664 44 689999999999999987521        13689999


Q ss_pred             EccCceeeeecccccc--cE-EEEEEcCCCCEEEEcccCCeEEEEeCCcceeec--eEEEeccceeEecC----------
Q 036585           88 SLHDNKYSRYFKGHHD--RV-VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQGRPAAAYDD----------  152 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~--~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~----------  152 (304)
                      |+.+|...+.+....+  .+ .-+.||.|++++|.-.. ..|.||+..+.....  .++..+...+.|+|          
T Consensus       288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp  366 (698)
T KOG2314|consen  288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP  366 (698)
T ss_pred             EccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence            9999988877764222  22 34678999999887766 457777654422211  11111221222222          


Q ss_pred             -------------------------------------CCeEEEec------------CCCeEEEEecCC---------CC
Q 036585          153 -------------------------------------QGLVFGYE------------KGPLDIFSVGGD---------IS  174 (304)
Q Consensus       153 -------------------------------------~~~~~~~~------------~~~~~~~~~~~~---------~~  174 (304)
                                                           +|.+++..            -..+.++.+...         ..
T Consensus       367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke  446 (698)
T KOG2314|consen  367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKE  446 (698)
T ss_pred             cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecch
Confidence                                                 22221110            112334444332         24


Q ss_pred             CceEEEEecCCcEEEEeeC---CCeEEEEEcCCC----ceeEEEEeCCCCCCcceEEEEcCCCcEEEEe---cCCCcEEE
Q 036585          175 DANVVKFSNDGRLMLLTTM---EGHIHVLDSFRG----TLLSTYNVKPVSRNSTLEASFSPEGMFVISG---SGDGSVHA  244 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---~~dg~i~v  244 (304)
                      .|...+|.|.|..+++-+.   ..++.+|..++.    +.+..+     .....+.+.|+|.|++++.+   +..|.+.+
T Consensus       447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F  521 (698)
T KOG2314|consen  447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-----DKKFANTVFWSPKGRFVVVAALVSRRGDLEF  521 (698)
T ss_pred             heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-----cccccceEEEcCCCcEEEEEEecccccceEE
Confidence            5667789999988877543   357888887732    122222     23556779999999998876   46789999


Q ss_pred             EecCCCceeeee-eccCCCCceEEeCCCCcEEEEecCc--------eEEeccCCcccc
Q 036585          245 WSVRSGKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--------LSFWIPDLSKLG  293 (304)
Q Consensus       245 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--------~~iw~~~~~~~~  293 (304)
                      +|+........- ..| ...+.+.|.|.|+|+++++.-        -+||++.++.++
T Consensus       522 ~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~  578 (698)
T KOG2314|consen  522 YDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLK  578 (698)
T ss_pred             EecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecHHHH
Confidence            998743332222 224 346889999999999998753        678888776543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=6e-14  Score=111.84  Aligned_cols=234  Identities=16%  Similarity=0.211  Sum_probs=146.6

Q ss_pred             cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccc--ccEEEEEEcCCCCEEEEcccCCeEEEEeCCc
Q 036585           56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH--DRVVLLSLCSSKDCFISGSLDRTVLLWDQRA  133 (304)
Q Consensus        56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  133 (304)
                      +....+.|..+|||+++++.+.  +.-.|++||+.+-..-  +..|.  ..|.-.-.+.|-..++.-..|.+|-+..--.
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~--YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G  125 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGT--YKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG  125 (703)
T ss_pred             CccccceeEecCCCcEEEEecc--cCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence            4456788999999999877664  3889999999865322  22222  2233222333333333333444444322110


Q ss_pred             ceeeceEEEeccceeEec-CC-CeEEEecCCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEc
Q 036585          134 EKCQGLLRVQGRPAAAYD-DQ-GLVFGYEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDS  202 (304)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  202 (304)
                      ......+...+. -++++ +. ..+++.....+.-++++         ...+.++++..++-..+|++|+.+|.|.+||.
T Consensus       126 ~hy~~RIP~~GR-Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp  204 (703)
T KOG2321|consen  126 RHYRTRIPKFGR-DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP  204 (703)
T ss_pred             eeeeeecCcCCc-cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence            000000000000 01111 11 12222222333333332         23478999999999999999999999999999


Q ss_pred             CCCceeEEEEeCCC---CCC-----cceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee-eccCCCCceEEeCCC--
Q 036585          203 FRGTLLSTYNVKPV---SRN-----STLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPG--  271 (304)
Q Consensus       203 ~~~~~~~~~~~~~~---~~~-----~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~--  271 (304)
                      ++.....++.....   +.+     .|+++.|+.+|-.+++|..+|.+.|||++..+++..- .+...+|..+.|.+.  
T Consensus       205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ  284 (703)
T ss_pred             hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence            98887777763221   222     4999999999999999999999999999998876543 334567899999875  


Q ss_pred             CcEEEEecCc-eEEeccCCccccc
Q 036585          272 SLMFVTGSSE-LSFWIPDLSKLGA  294 (304)
Q Consensus       272 ~~~l~s~~~d-~~iw~~~~~~~~~  294 (304)
                      +..+++.... ++||+-...+...
T Consensus       285 q~~v~S~Dk~~~kiWd~~~Gk~~a  308 (703)
T KOG2321|consen  285 QNKVVSMDKRILKIWDECTGKPMA  308 (703)
T ss_pred             CceEEecchHHhhhcccccCCcee
Confidence            5677777777 9999987766543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.66  E-value=6.8e-14  Score=104.87  Aligned_cols=240  Identities=16%  Similarity=0.282  Sum_probs=165.1

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcc-----eeeeecccc------------cceeEEEEccCCC--eEEEEecCC
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAAT-----CLKTINSKK------------YGVDLVCFTSHPT--TVIYSSKNG   79 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~~~~~~   79 (304)
                      ..|.+...|++||||..+|.|.++.-+...     ....++.|.            ..|..+.|.+++.  .++..+.  
T Consensus        29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN--  106 (433)
T KOG1354|consen   29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN--  106 (433)
T ss_pred             eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC--
Confidence            457888899999999999999999754322     223344443            3588899988765  4455555  


Q ss_pred             CCCceEEEEccCceee-----------------------------------eec-ccccccEEEEEEcCCCCEEEEcccC
Q 036585           80 WDESLRLLSLHDNKYS-----------------------------------RYF-KGHHDRVVLLSLCSSKDCFISGSLD  123 (304)
Q Consensus        80 ~d~~i~vwd~~~~~~~-----------------------------------~~~-~~~~~~v~~~~~~~~~~~l~~~~~d  123 (304)
                       |.+|++|.+......                                   +.+ ..|+.-|.++.++.|...++++. |
T Consensus       107 -dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-d  184 (433)
T KOG1354|consen  107 -DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-D  184 (433)
T ss_pred             -CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-c
Confidence             999999988642110                                   011 25777889999999998888865 5


Q ss_pred             CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC-----CCCceEEEEecC-CcEEEEeeCCCeE
Q 036585          124 RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD-----ISDANVVKFSND-GRLMLLTTMEGHI  197 (304)
Q Consensus       124 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~dg~i  197 (304)
                      -.|.+|+++-....                          ..+.+++.+     ..-|++..|+|. .+.|+-++..|+|
T Consensus       185 LRINLWnlei~d~s--------------------------FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI  238 (433)
T KOG1354|consen  185 LRINLWNLEIIDQS--------------------------FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI  238 (433)
T ss_pred             eeeeeccccccCCc--------------------------eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence            78999998643221                          122222222     245788899995 4677778889999


Q ss_pred             EEEEcCCCceeE----EEEeC--C-------CCCCcceEEEEcCCCcEEEEecCCCcEEEEec-CCCceeeeeeccCC--
Q 036585          198 HVLDSFRGTLLS----TYNVK--P-------VSRNSTLEASFSPEGMFVISGSGDGSVHAWSV-RSGKEVASWMSFDT--  261 (304)
Q Consensus       198 ~~~d~~~~~~~~----~~~~~--~-------~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~--  261 (304)
                      ++.|++...+.-    .+..+  +       .--..|..+.|+++|+|+++-+. -+|++||+ ...+++.+++-|..  
T Consensus       239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr  317 (433)
T KOG1354|consen  239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR  317 (433)
T ss_pred             EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence            999998543221    11111  0       11235778999999999998754 47999999 55677777766532  


Q ss_pred             ----------CC---ceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          262 ----------EP---PVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       262 ----------~i---~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                                .|   ..++|+.++.+++||+..  .++++.+.
T Consensus       318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence                      22   457899999999999988  88998543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.65  E-value=1e-14  Score=120.29  Aligned_cols=224  Identities=13%  Similarity=0.116  Sum_probs=153.8

Q ss_pred             eEeeccc-CcEEEEeeCCCeEEEEecCCcce--eee----ecccccceeEEEEccCCCe--EEEEecCCCCCceEEEEcc
Q 036585           20 ILQSMEV-GIYLVTASDDESIRLYDVTAATC--LKT----INSKKYGVDLVCFTSHPTT--VIYSSKNGWDESLRLLSLH   90 (304)
Q Consensus        20 ~i~~~~~-~~~l~~~~~d~~i~vw~~~~~~~--~~~----~~~~~~~v~~~~~~~~~~~--l~~~~~~~~d~~i~vwd~~   90 (304)
                      ++.+.|. ..++|.|..+|.|.+||+..+..  ...    ...|..++..+.|..+...  +++++.   ||.|..|+++
T Consensus       247 ~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss---DG~i~~W~~~  323 (555)
T KOG1587|consen  247 CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS---DGSICSWDTD  323 (555)
T ss_pred             EEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec---CCcEeeeecc
Confidence            4556665 67889999999999999987654  222    2357889999999876555  999998   9999999876


Q ss_pred             Cceee------eecc------cccccEEEEEEcC-CCCEEEEcccCCeEEE---EeCCcce-------eeceEEEeccce
Q 036585           91 DNKYS------RYFK------GHHDRVVLLSLCS-SKDCFISGSLDRTVLL---WDQRAEK-------CQGLLRVQGRPA  147 (304)
Q Consensus        91 ~~~~~------~~~~------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i---wd~~~~~-------~~~~~~~~~~~~  147 (304)
                      .-...      ....      .-...+++++|.+ +...|+.|+.+|.|..   ++.+...       ............
T Consensus       324 ~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~  403 (555)
T KOG1587|consen  324 MLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYA  403 (555)
T ss_pred             ccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEe
Confidence            43221      1111      1224678999988 5568999999998876   2222222       233444444443


Q ss_pred             eEecCCC--eEEEecCCCeEEEEec----------CCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCCc--eeEEEE
Q 036585          148 AAYDDQG--LVFGYEKGPLDIFSVG----------GDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGT--LLSTYN  212 (304)
Q Consensus       148 ~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~--~~~~~~  212 (304)
                      +..+|-.  .++...+-.+++|...          .+...+++++|||.. ..|+++..+|.|.+||+....  +..+..
T Consensus       404 v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~  483 (555)
T KOG1587|consen  404 VSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK  483 (555)
T ss_pred             eecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc
Confidence            3333322  2222236666666554          345569999999976 567778889999999997543  333333


Q ss_pred             eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585          213 VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       213 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~  249 (304)
                         ......+.+.|+++|+.|++|...|.+++|++..
T Consensus       484 ---~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  484 ---VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ---ccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence               2356777889999999999999999999999953

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.65  E-value=4.1e-14  Score=113.01  Aligned_cols=188  Identities=10%  Similarity=0.185  Sum_probs=146.3

Q ss_pred             cCCCeEEEEecCCCCCceEEEEccCceeeeecccc---cccEEEEEEc------C--------------CCCEEEEcccC
Q 036585           67 SHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH---HDRVVLLSLC------S--------------SKDCFISGSLD  123 (304)
Q Consensus        67 ~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~------~--------------~~~~l~~~~~d  123 (304)
                      |...+++....   ||.+++|+...++..+.+...   .+..++..|.      |              +-..++-|...
T Consensus         3 ~~~~~~A~~~~---~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~   79 (541)
T KOG4547|consen    3 PALDYFALSTG---DGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ   79 (541)
T ss_pred             chhheEeecCC---CCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence            44567777777   999999999998876665421   2223333332      1              12256667777


Q ss_pred             CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC
Q 036585          124 RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  203 (304)
Q Consensus       124 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  203 (304)
                      |.|.+|++..++....+..                           ..|.+.|+++.++.+-..|.+++.|+.+..|+..
T Consensus        80 g~v~~ys~~~g~it~~~st---------------------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~  132 (541)
T KOG4547|consen   80 GSVLLYSVAGGEITAKLST---------------------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK  132 (541)
T ss_pred             ccEEEEEecCCeEEEEEec---------------------------CCCCCcceeeecccccCceEecCCceeEEEEecc
Confidence            7788888777766555542                           2578899999999999999999999999999999


Q ss_pred             CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCC-----CcEEEEe
Q 036585          204 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPG-----SLMFVTG  278 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~s~  278 (304)
                      ..+.++.+.   .....+.+++.+||+..+++++  +.|++||+++++.+..+.+|.++|+++.|-.+     |.++.++
T Consensus       133 ~~~~~~~~~---~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss  207 (541)
T KOG4547|consen  133 EKVIIRIWK---EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS  207 (541)
T ss_pred             cceeeeeec---cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence            999999888   5677788999999999999986  57999999999999999999999999999876     6666554


Q ss_pred             cC-c--eEEeccCC
Q 036585          279 SS-E--LSFWIPDL  289 (304)
Q Consensus       279 ~~-d--~~iw~~~~  289 (304)
                      .. +  +.+|..+.
T Consensus       208 a~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  208 AAAERGITVWVVEK  221 (541)
T ss_pred             cccccceeEEEEEc
Confidence            33 3  88898765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.63  E-value=1.1e-13  Score=110.62  Aligned_cols=188  Identities=15%  Similarity=0.234  Sum_probs=149.9

Q ss_pred             ccCcEEEEeeCCCeEEEEecCCcceeeeeccc---ccceeEEEEc--------------------cCCCeEEEEecCCCC
Q 036585           25 EVGIYLVTASDDESIRLYDVTAATCLKTINSK---KYGVDLVCFT--------------------SHPTTVIYSSKNGWD   81 (304)
Q Consensus        25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~~--------------------~~~~~l~~~~~~~~d   81 (304)
                      +...|+|....||.+|+|+..++++.+.+...   .+...+..|.                    .+...++-|..   .
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~---~   79 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP---Q   79 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC---C
Confidence            45689999999999999999988877666531   2334444442                    23345666666   9


Q ss_pred             CceEEEEccCceeeeecc--cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEe
Q 036585           82 ESLRLLSLHDNKYSRYFK--GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGY  159 (304)
Q Consensus        82 ~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (304)
                      |.|.+|+...++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+...........                  
T Consensus        80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~------------------  141 (541)
T KOG4547|consen   80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK------------------  141 (541)
T ss_pred             ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec------------------
Confidence            999999999998777665  688999999999999999999999999999998877666554                  


Q ss_pred             cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC-----CcEEE
Q 036585          160 EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-----GMFVI  234 (304)
Q Consensus       160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~  234 (304)
                                 ..+..+.+++++|||+.+++++  +.|++||+++++.+.+|.   +|.++|.++.|--+     |.+++
T Consensus       142 -----------~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft---gh~s~v~t~~f~~~~~g~~G~~vL  205 (541)
T KOG4547|consen  142 -----------EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT---GHGSPVRTLSFTTLIDGIIGKYVL  205 (541)
T ss_pred             -----------cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec---CCCcceEEEEEEEeccccccceee
Confidence                       3345678899999999999887  589999999999999999   89999999999887     67766


Q ss_pred             Ee-cCCCcEEEEecCC
Q 036585          235 SG-SGDGSVHAWSVRS  249 (304)
Q Consensus       235 ~~-~~dg~i~v~d~~~  249 (304)
                      ++ ..+..+.+|-+..
T Consensus       206 ssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  206 SSAAAERGITVWVVEK  221 (541)
T ss_pred             eccccccceeEEEEEc
Confidence            65 3455677886654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=3e-13  Score=111.12  Aligned_cols=217  Identities=15%  Similarity=0.125  Sum_probs=132.8

Q ss_pred             EeecccCcE--E-EEeeCCC--eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecC--CCCCceEEEEccCc-
Q 036585           21 LQSMEVGIY--L-VTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN--GWDESLRLLSLHDN-   92 (304)
Q Consensus        21 i~~~~~~~~--l-~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~d~~i~vwd~~~~-   92 (304)
                      -.|+|||+.  + ++...+|  .|.+.++.+++... +....+.....+|+|||+.|+..+..  ..+..+.+|++..+ 
T Consensus       190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~  268 (428)
T PRK01029        190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA  268 (428)
T ss_pred             ceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence            479999874  2 2444444  47777887765433 22233345568999999999887742  11223344676652 


Q ss_pred             --eeeeecccccccEEEEEEcCCCCEEEEcc-cCCeEEEE--eCCcc-eeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585           93 --KYSRYFKGHHDRVVLLSLCSSKDCFISGS-LDRTVLLW--DQRAE-KCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI  166 (304)
Q Consensus        93 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (304)
                        +................|+|||+.|+..+ .+|...+|  ++... .....+                          
T Consensus       269 ~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l--------------------------  322 (428)
T PRK01029        269 IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL--------------------------  322 (428)
T ss_pred             CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe--------------------------
Confidence              33333322223446789999999777655 45654454  33221 111111                          


Q ss_pred             EEecCCCCCceEEEEecCCcEEEEeeCC---CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC---CC
Q 036585          167 FSVGGDISDANVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG---DG  240 (304)
Q Consensus       167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg  240 (304)
                         ......+....|+|||+.|+..+.+   ..|.+||+.+++......    ....+....|+|||++|+....   ..
T Consensus       323 ---t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~----~~~~~~~p~wSpDG~~L~f~~~~~g~~  395 (428)
T PRK01029        323 ---TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT----SPENKESPSWAIDSLHLVYSAGNSNES  395 (428)
T ss_pred             ---ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC----CCCCccceEECCCCCEEEEEECCCCCc
Confidence               1122345678999999988876543   479999998887643322    2345667899999998875432   35


Q ss_pred             cEEEEecCCCceeeeeeccCCCCceEEeCCCC
Q 036585          241 SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS  272 (304)
Q Consensus       241 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  272 (304)
                      .|+++|+..++.. .+....+.+...+|+|-.
T Consensus       396 ~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        396 ELYLISLITKKTR-KIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             eEEEEECCCCCEE-EeecCCCcccCceecCCC
Confidence            6889999877653 333355567788898753

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.62  E-value=2.6e-11  Score=95.30  Aligned_cols=226  Identities=14%  Similarity=0.147  Sum_probs=144.7

Q ss_pred             ecccCcEEEEeeC----------CCeEEEEecCCcceeeeeccccc-------ceeEEEEccCCCeEEEEecCCCCCceE
Q 036585           23 SMEVGIYLVTASD----------DESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHPTTVIYSSKNGWDESLR   85 (304)
Q Consensus        23 ~~~~~~~l~~~~~----------d~~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~~~~d~~i~   85 (304)
                      .++||+.|+++..          +..|.+||..+++.+..+.....       ....++++|||++|++.... .+..|.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~-p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS-PSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-CCCEEE
Confidence            8899988877765          67899999999999988875322       23478999999999987642 278999


Q ss_pred             EEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee--eceEEE--e------ccceeEecCCCe
Q 036585           86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC--QGLLRV--Q------GRPAAAYDDQGL  155 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~--~------~~~~~~~~~~~~  155 (304)
                      +.|+.+++.+..+.- .+...-+..+++...+  -+.||......+.....  ......  .      ..+.........
T Consensus       132 VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~  208 (352)
T TIGR02658       132 VVDLEGKAFVRMMDV-PDCYHIFPTANDTFFM--HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL  208 (352)
T ss_pred             EEECCCCcEEEEEeC-CCCcEEEEecCCccEE--EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence            999999998877663 2222222222222221  12334333322221111  011010  0      111111101223


Q ss_pred             EEEecCCCeEEEEecC---------------------CCCCceEEEEecCCcEEEEee----------CCCeEEEEEcCC
Q 036585          156 VFGYEKGPLDIFSVGG---------------------DISDANVVKFSNDGRLMLLTT----------MEGHIHVLDSFR  204 (304)
Q Consensus       156 ~~~~~~~~~~~~~~~~---------------------~~~~v~~~~~~~~~~~l~~~~----------~dg~i~~~d~~~  204 (304)
                      ++....+.+.+.++.+                     ......-++++|+++.+++..          ..+.|.++|..+
T Consensus       209 ~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t  288 (352)
T TIGR02658       209 VWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT  288 (352)
T ss_pred             EEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence            3322235555554321                     123334599999999888843          124799999999


Q ss_pred             CceeEEEEeCCCCCCcceEEEEcCCCc-EEEEec-CCCcEEEEecCCCceeeee
Q 036585          205 GTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS-GDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~v~d~~~~~~~~~~  256 (304)
                      ++.+..+.    ....+..++++||++ +|++.. .++.|.++|..+++.++++
T Consensus       289 ~kvi~~i~----vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       289 GKRLRKIE----LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CeEEEEEe----CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            99999988    456888999999999 888776 5788999999999998887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.60  E-value=1.4e-11  Score=93.46  Aligned_cols=247  Identities=13%  Similarity=0.150  Sum_probs=169.0

Q ss_pred             cceeeEeecccCcEEEEeeCC---CeEEEEecCC--cce--eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585           16 LSEEILQSMEVGIYLVTASDD---ESIRLYDVTA--ATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   88 (304)
Q Consensus        16 ~~~~~i~~~~~~~~l~~~~~d---~~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd   88 (304)
                      ..+..+.+.+++++|.++-.+   |.|-.|.++.  |++  +........+...+++++++++++++...  -|.|.++-
T Consensus        40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~--~g~v~v~p  117 (346)
T COG2706          40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH--SGSVSVYP  117 (346)
T ss_pred             CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc--CceEEEEE
Confidence            345668889999998888654   6677777664  443  22222233345889999999999999986  79999999


Q ss_pred             ccC-ceeee--eccccccc----------EEEEEEcCCCCEEEEccc-CCeEEEEeCCcceeeceEEEeccceeEecCCC
Q 036585           89 LHD-NKYSR--YFKGHHDR----------VVLLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG  154 (304)
Q Consensus        89 ~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  154 (304)
                      ++. |....  .+..|.+.          +.+..+.|+++++++... -..|.+|++..++....-...-          
T Consensus       118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v----------  187 (346)
T COG2706         118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV----------  187 (346)
T ss_pred             cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc----------
Confidence            865 33211  12235444          888999999999988753 2468999998665433221110          


Q ss_pred             eEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCC-ceeEEEEeCC------CCCCcceEEEE
Q 036585          155 LVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRG-TLLSTYNVKP------VSRNSTLEASF  226 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~-~~~~~~~~~~------~~~~~i~~~~~  226 (304)
                                      ......+.|.|+|++++..+.++ +++|.+|..... .....++...      ......-.+..
T Consensus       188 ----------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi  251 (346)
T COG2706         188 ----------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI  251 (346)
T ss_pred             ----------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence                            13346688999999998877654 889999998763 2333333110      12345667899


Q ss_pred             cCCCcEEEEecC-CCcEEEEecCC--Cce--eeeeeccCCCCceEEeCCCCcEEEEecCc---eEEeccCCc
Q 036585          227 SPEGMFVISGSG-DGSVHAWSVRS--GKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPDLS  290 (304)
Q Consensus       227 s~~~~~l~~~~~-dg~i~v~d~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~~  290 (304)
                      +|||++|+++.. ...|.+|.+..  +++  +.....+....+...|+|++++|+++..+   +.+|..+.+
T Consensus       252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence            999999999863 34688887754  322  22334455568999999999999999987   888877543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.59  E-value=6.8e-14  Score=118.58  Aligned_cols=188  Identities=15%  Similarity=0.198  Sum_probs=149.9

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeeccccc----ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccc
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKY----GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH  101 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~  101 (304)
                      ..+.++.+..+..+.+||...+.....+.....    ...-+-++++.-++++|+.   -+.|.+|+....+....+.+|
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv---~~~iivW~~~~dn~p~~l~GH  174 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV---FGEIIVWKPHEDNKPIRLKGH  174 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc---cccEEEEeccccCCcceeccc
Confidence            466788888888999999988777766664432    2223345667778888888   999999999855544468899


Q ss_pred             cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEE
Q 036585          102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF  181 (304)
Q Consensus       102 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  181 (304)
                      .+.|.++.|+.+|+++++.+.|.++++|++++.+......                            -+|...+..+.|
T Consensus       175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~----------------------------fgHsaRvw~~~~  226 (967)
T KOG0974|consen  175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG----------------------------FGHSARVWACCF  226 (967)
T ss_pred             CCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc----------------------------ccccceeEEEEe
Confidence            9999999999999999999999999999999887655111                            158889999999


Q ss_pred             ecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585          182 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       182 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~  249 (304)
                      .|+  .+++++.|-+.++|+.. ++.+..+..  .....+..++..++...+++++.|+.+++||+..
T Consensus       227 ~~n--~i~t~gedctcrvW~~~-~~~l~~y~~--h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  227 LPN--RIITVGEDCTCRVWGVN-GTQLEVYDE--HSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ccc--eeEEeccceEEEEEecc-cceehhhhh--hhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            998  89999999999999754 444445552  1345788999999999999999999999999854

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.59  E-value=8.6e-13  Score=99.01  Aligned_cols=233  Identities=13%  Similarity=0.188  Sum_probs=165.4

Q ss_pred             eeeeecceeeEe---ecccCcEEEEeeCCCeEEEEecC-Ccceeeeec-ccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585           11 KVSLELSEEILQ---SMEVGIYLVTASDDESIRLYDVT-AATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   85 (304)
Q Consensus        11 ~~~~~~~~~~i~---~~~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~   85 (304)
                      ...+++|.+.+.   ..|-.+-+++.+.|.++|||--. .++.-..+. ....+++++.+.++...|+++-.   .|++.
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~---ngtvt   93 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD---NGTVT   93 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe---cceEE
Confidence            344566655543   33446678999999999999543 344333332 23468899999999999999998   89998


Q ss_pred             EEEcc----CceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccce-------eEe--cC
Q 036585           86 LLSLH----DNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-------AAY--DD  152 (304)
Q Consensus        86 vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~--~~  152 (304)
                      -+.+.    ....++....|...+..+.|+....++++.+.|..+.---.+.+..+..+.......       ..+  +.
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~  173 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH  173 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence            88664    334566677899999999999888899999999877655555554443332221110       111  11


Q ss_pred             CCeEE---EecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeE-EEEeCCCCCCcceEEEEcC
Q 036585          153 QGLVF---GYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS-TYNVKPVSRNSTLEASFSP  228 (304)
Q Consensus       153 ~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~~~i~~~~~s~  228 (304)
                      .+.+.   ......-.+..+.+|...+.+++|.|....+.+|..|..+.+||+--.+-+. ...   +|...+..++.-+
T Consensus       174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~---gh~~kV~~l~~~~  250 (404)
T KOG1409|consen  174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ---GHNDKVQALSYAQ  250 (404)
T ss_pred             ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec---cchhhhhhhhhhh
Confidence            11111   2233444566778899999999999999999999999999999985443322 223   5788888888888


Q ss_pred             CCcEEEEecCCCcEEEEecCC
Q 036585          229 EGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       229 ~~~~l~~~~~dg~i~v~d~~~  249 (304)
                      --+.+.+++.||.|.+|+++.
T Consensus       251 ~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  251 HTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hheeeeeccCCCeEEEEeccc
Confidence            888899999999999999864

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.4e-11  Score=100.67  Aligned_cols=218  Identities=12%  Similarity=0.063  Sum_probs=136.3

Q ss_pred             eEEEEecCCcceeeeecccccceeEEEEccCCCe-EEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCE
Q 036585           38 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT-VIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC  116 (304)
Q Consensus        38 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  116 (304)
                      .|.+-|..... .+.+.... ......|+|+++. ++..+..+.+..|.++|+.+++...... ..+......|+|||+.
T Consensus       170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK  246 (419)
T ss_pred             eEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence            55565654333 33333333 6778999999985 6655553225679999998887544433 4555667889999986


Q ss_pred             EEEc-cc--CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC
Q 036585          117 FISG-SL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM  193 (304)
Q Consensus       117 l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  193 (304)
                      ++.. +.  +..|.++|+.++.......                              +........|+|||+.|+..+.
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~~~LT~------------------------------~~~~d~~p~~SPDG~~I~F~Sd  296 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTLTQITN------------------------------YPGIDVNGNFVEDDKRIVFVSD  296 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcEEEccc------------------------------CCCccCccEECCCCCEEEEEEC
Confidence            6543 32  3568888887665332211                              1111234579999988777654


Q ss_pred             C-C--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---------CcEEEEecCCCceeeeeeccCC
Q 036585          194 E-G--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---------GSVHAWSVRSGKEVASWMSFDT  261 (304)
Q Consensus       194 d-g--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~  261 (304)
                      . +  .|+++|+.+++......    ....  ...|||||++|+.....         ..|.+.|+.+++. ..+... .
T Consensus       297 r~g~~~Iy~~dl~~g~~~rlt~----~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~  368 (419)
T PRK04043        297 RLGYPNIFMKKLNSGSVEQVVF----HGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-G  368 (419)
T ss_pred             CCCCceEEEEECCCCCeEeCcc----CCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-C
Confidence            2 3  68888988777644332    1111  24899999988766533         3688889887764 344332 2


Q ss_pred             CCceEEeCCCCcEEEEecCc-----eEEeccCCccccccc
Q 036585          262 EPPVIKWAPGSLMFVTGSSE-----LSFWIPDLSKLGAYV  296 (304)
Q Consensus       262 ~i~~~~~~~~~~~l~s~~~d-----~~iw~~~~~~~~~~~  296 (304)
                      ......|+|||+.++..+.+     +.+.+++.+....+.
T Consensus       369 ~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~  408 (419)
T PRK04043        369 VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFP  408 (419)
T ss_pred             CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence            34468899999988766544     445556665544443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2.3e-14  Score=111.97  Aligned_cols=211  Identities=11%  Similarity=0.125  Sum_probs=158.0

Q ss_pred             eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc-cccccEEEEEEcCC--CCEEEEcccCCe
Q 036585           49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK-GHHDRVVLLSLCSS--KDCFISGSLDRT  125 (304)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~dg~  125 (304)
                      +...|..|.+.|..+.|+..|..|++++.   |..|.+||...++....+. +|...|....|.|.  ...+++++.||.
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSD---D~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSD---DLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCc---cceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            34567789999999999999999999999   9999999999988766654 79889998999983  457999999999


Q ss_pred             EEEEeCCcceeec-eEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcC
Q 036585          126 VLLWDQRAEKCQG-LLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSF  203 (304)
Q Consensus       126 i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~  203 (304)
                      +++=.+....... ..                           .+..|.+.|..++.-|+. ..|.+++.|+.+.-+|++
T Consensus       211 vr~s~i~~t~~~e~t~---------------------------rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr  263 (559)
T KOG1334|consen  211 VRVSEILETGYVENTK---------------------------RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR  263 (559)
T ss_pred             eeeeeeccccceecce---------------------------ecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence            9986654332221 21                           123578899999998865 568899999999999999


Q ss_pred             CCceeEEEEeCCCCCC---cceEEEEcCCCc-EEEEecCCCcEEEEecCCCce------eeeee------ccCCCCceEE
Q 036585          204 RGTLLSTYNVKPVSRN---STLEASFSPEGM-FVISGSGDGSVHAWSVRSGKE------VASWM------SFDTEPPVIK  267 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~---~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~~------~~~~~------~~~~~i~~~~  267 (304)
                      ++.+...+........   ....++..|-.. .+++++.|-.+++||.+....      +..+.      ...-.|++++
T Consensus       264 ~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~  343 (559)
T KOG1334|consen  264 QDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV  343 (559)
T ss_pred             cCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE
Confidence            8877766654433444   677889999554 799999999999999875322      23332      2234689999


Q ss_pred             eCCCCc-EEEEecCc-eEEeccCC
Q 036585          268 WAPGSL-MFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       268 ~~~~~~-~l~s~~~d-~~iw~~~~  289 (304)
                      |+.++. +|++-... +.++.-+.
T Consensus       344 Ysh~~sElLaSYnDe~IYLF~~~~  367 (559)
T KOG1334|consen  344 YSHDGSELLASYNDEDIYLFNKSM  367 (559)
T ss_pred             ecCCccceeeeecccceEEecccc
Confidence            996654 55554444 77775443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.57  E-value=3.2e-11  Score=96.83  Aligned_cols=227  Identities=15%  Similarity=0.187  Sum_probs=141.9

Q ss_pred             eeeEeecccCcEEEEeeC-CCeEEEEecCC-cceeee---ec----------ccccceeEEEEccCCCeEEEEecCCCCC
Q 036585           18 EEILQSMEVGIYLVTASD-DESIRLYDVTA-ATCLKT---IN----------SKKYGVDLVCFTSHPTTVIYSSKNGWDE   82 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~-d~~i~vw~~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~~~~~~~d~   82 (304)
                      +..+...+++++|+++.. +|.|.++++.. +.+...   +.          ......+++.|+|+++++++...+  ..
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D  166 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--AD  166 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TT
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CC
Confidence            345788899999999874 88999999986 333222   11          112357899999999999988764  66


Q ss_pred             ceEEEEccCce--e--eeecc-cccccEEEEEEcCCCCEEEEc-ccCCeEEEEeCC--cceeeceEEEeccceeEecCCC
Q 036585           83 SLRLLSLHDNK--Y--SRYFK-GHHDRVVLLSLCSSKDCFISG-SLDRTVLLWDQR--AEKCQGLLRVQGRPAAAYDDQG  154 (304)
Q Consensus        83 ~i~vwd~~~~~--~--~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~  154 (304)
                      .|.+|++....  .  ...+. ........+.|+|++++++.. ..++.|.++++.  .+...........+.   ..  
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~---~~--  241 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE---GF--  241 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET---TS--
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc---cc--
Confidence            89999997654  2  11222 233467889999999977654 567889999887  332221111111000   00  


Q ss_pred             eEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcC--CCceeEEEEeCCCCCCcceEEEEcCCCc
Q 036585          155 LVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSF--RGTLLSTYNVKPVSRNSTLEASFSPEGM  231 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~  231 (304)
                                      ........++++|||++|+++.. .+.|.+|++.  +++....-... ........++++|+|+
T Consensus       242 ----------------~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~  304 (345)
T PF10282_consen  242 ----------------TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGR  304 (345)
T ss_dssp             ----------------CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSS
T ss_pred             ----------------cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCC
Confidence                            01125678999999999888764 6689999983  34433222211 2344578899999999


Q ss_pred             EEEEec-CCCcEEEEec--CCCceeeeee-ccCCCCceEEe
Q 036585          232 FVISGS-GDGSVHAWSV--RSGKEVASWM-SFDTEPPVIKW  268 (304)
Q Consensus       232 ~l~~~~-~dg~i~v~d~--~~~~~~~~~~-~~~~~i~~~~~  268 (304)
                      +|+++. .++.|.+|++  ++|.+...-. .......||.|
T Consensus       305 ~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  305 YLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            999876 5568999976  4555433321 23344566665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.54  E-value=3.4e-11  Score=95.10  Aligned_cols=261  Identities=14%  Similarity=0.167  Sum_probs=175.0

Q ss_pred             eEeecccCcEEEEeeCCCe---------------EEEEecCCcceeeeecccccc--ee-EEEEccCCCeEEEEecCCCC
Q 036585           20 ILQSMEVGIYLVTASDDES---------------IRLYDVTAATCLKTINSKKYG--VD-LVCFTSHPTTVIYSSKNGWD   81 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~---------------i~vw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~~~~d   81 (304)
                      -+.++|.++||.+-+..+.               +.+||..++..+..+.....+  .. -+.|+.+.++++-..    .
T Consensus        76 ~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv----~  151 (561)
T COG5354          76 YLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV----G  151 (561)
T ss_pred             ecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc----c
Confidence            3678889999998876544               899999999999988876554  44 688999998887775    6


Q ss_pred             CceEEEEccCceeeeecccc-cccEEEEEEcCCC--CEEEE-----cccCCeEEEEeCCcceeeceEEE--eccceeEec
Q 036585           82 ESLRLLSLHDNKYSRYFKGH-HDRVVLLSLCSSK--DCFIS-----GSLDRTVLLWDQRAEKCQGLLRV--QGRPAAAYD  151 (304)
Q Consensus        82 ~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~  151 (304)
                      ..++|+++...-....+..- ...|....|+|.+  ..|+.     ....+.+++|.+..++.+.....  -....+.|.
T Consensus       152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~  231 (561)
T COG5354         152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ  231 (561)
T ss_pred             CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe
Confidence            68999997322111112111 3568888899853  34443     45678999999886665544332  222234444


Q ss_pred             CCCeEE-------------EecCCCeEEEEec--------CCCCCceEEEEecCCcEEEEee--CCCeEEEEEcCCCcee
Q 036585          152 DQGLVF-------------GYEKGPLDIFSVG--------GDISDANVVKFSNDGRLMLLTT--MEGHIHVLDSFRGTLL  208 (304)
Q Consensus       152 ~~~~~~-------------~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~  208 (304)
                      +.+.++             -+....+.++.+.        ...++|..++|+|.++.|++.+  ....+.++|++.. ..
T Consensus       232 ~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~  310 (561)
T COG5354         232 VLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR  310 (561)
T ss_pred             cCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE
Confidence            444222             1222344455443        2367899999999988877654  6788999998765 33


Q ss_pred             EEEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEecCCCceee-eeeccCCCCceEEeCCCCcEEEEecC----
Q 036585          209 STYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSVRSGKEVA-SWMSFDTEPPVIKWAPGSLMFVTGSS----  280 (304)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~----  280 (304)
                      ..+     ....-+.+.|+|.+++++.++-|   |.+-+||........ .+.+.  ..+-+.|+||++++.+...    
T Consensus       311 ~~~-----Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~  383 (561)
T COG5354         311 FYF-----PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKL  383 (561)
T ss_pred             Eec-----CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCccc
Confidence            222     33444557899999999987755   679999986644333 55433  3355679999998877643    


Q ss_pred             --c--eEEeccCCccc
Q 036585          281 --E--LSFWIPDLSKL  292 (304)
Q Consensus       281 --d--~~iw~~~~~~~  292 (304)
                        |  ++||++...+.
T Consensus       384 ~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         384 RVDNSIKLWDVYGAKV  399 (561)
T ss_pred             ccCcceEEEEecCchh
Confidence              2  89999876654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.2e-11  Score=101.01  Aligned_cols=209  Identities=7%  Similarity=-0.028  Sum_probs=130.8

Q ss_pred             eeEeecccCcE-EEEeeCC---CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           19 EILQSMEVGIY-LVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        19 ~~i~~~~~~~~-l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      ..-.|+|+|+. ++..+.+   ..|.++|+.+++...... ..+......|+|||+.++.......+..|.++|+.+++.
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~  269 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL  269 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence            34678999984 6654443   468889998876544333 344566788999999888766533367888889887764


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEccc-CC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG  171 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (304)
                      . .+..+........|+|||+.++..+. .+  .|.++|+.+++..+....                            +
T Consensus       270 ~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----------------------------g  320 (419)
T PRK04043        270 T-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----------------------------G  320 (419)
T ss_pred             E-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC----------------------------C
Confidence            3 34434433445689999987766553 22  577778776654322210                            0


Q ss_pred             CCCCceEEEEecCCcEEEEeeCC---------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-C-
Q 036585          172 DISDANVVKFSNDGRLMLLTTME---------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-G-  240 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g-  240 (304)
                      .    ....|+|+|+.++.....         ..|.+.|+.++... .+..   . .......|+|||+.|+....+ + 
T Consensus       321 ~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~---~-~~~~~p~~SPDG~~I~f~~~~~~~  391 (419)
T PRK04043        321 K----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA---N-GVNQFPRFSSDGGSIMFIKYLGNQ  391 (419)
T ss_pred             C----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC---C-CCcCCeEECCCCCEEEEEEccCCc
Confidence            1    124899999988876543         37888998887643 3331   1 223358899999987766533 2 


Q ss_pred             -cEEEEecCCCceeeeeeccCCCCceEE
Q 036585          241 -SVHAWSVRSGKEVASWMSFDTEPPVIK  267 (304)
Q Consensus       241 -~i~v~d~~~~~~~~~~~~~~~~i~~~~  267 (304)
                       .+.+.++. +.....+....+.+...+
T Consensus       392 ~~L~~~~l~-g~~~~~l~~~~g~~~~p~  418 (419)
T PRK04043        392 SALGIIRLN-YNKSFLFPLKVGKIQSID  418 (419)
T ss_pred             EEEEEEecC-CCeeEEeecCCCccCCCC
Confidence             36677764 444444544444454433

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=5.4e-14  Score=125.33  Aligned_cols=190  Identities=16%  Similarity=0.277  Sum_probs=155.8

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecCCcceeeeecc-cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      +..+|...+.+||+.||.+++|....++.+..++. ....|+.+.|+.+|+.+..+..   ||.+.+|.+. .++....+
T Consensus      2214 ~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~---dg~l~l~q~~-pk~~~s~q 2289 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDG---DGDLSLWQAS-PKPYTSWQ 2289 (2439)
T ss_pred             ecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeecc---CCceeecccC-Ccceeccc
Confidence            44556788999999999999999998888777653 2378999999999999998887   9999999987 67777888


Q ss_pred             cccccEEEEEEcCCCCEEEEcc---cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585          100 GHHDRVVLLSLCSSKDCFISGS---LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA  176 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  176 (304)
                      .|......+.|-.  ..+++++   .++.+.+||..-......+.                            ..|.+.+
T Consensus      2290 chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~----------------------------~~H~~ga 2339 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH----------------------------TCHDGGA 2339 (2439)
T ss_pred             cCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee----------------------------eecCCCc
Confidence            8998888888875  5666654   57889999965443333222                            2478899


Q ss_pred             eEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585          177 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       177 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      +++++-|..+.|++|+.+|.|++||++..+.+++++   .         +. ...++++|+..|.++||++.....+..+
T Consensus      2340 T~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~---~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ---A---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             eEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh---h---------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence            999999999999999999999999999988887776   1         44 5668999999999999999888777766


Q ss_pred             e
Q 036585          257 M  257 (304)
Q Consensus       257 ~  257 (304)
                      +
T Consensus      2407 p 2407 (2439)
T KOG1064|consen 2407 P 2407 (2439)
T ss_pred             c
Confidence            4

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=1e-12  Score=111.56  Aligned_cols=191  Identities=16%  Similarity=0.222  Sum_probs=151.2

Q ss_pred             EEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE-----EEEEEcCCCCEEEEcccCCeEEEEeCCcceee
Q 036585           63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV-----VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ  137 (304)
Q Consensus        63 ~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  137 (304)
                      ..+..+.+.++.++.   ++.+.+||...+.....+. +....     .-+.++++.-++++|+.-+.|.+|+.......
T Consensus        93 ~~l~~e~k~i~l~~~---~ns~~i~d~~~~~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p  168 (967)
T KOG0974|consen   93 AKLFEENKKIALVTS---RNSLLIRDSKNSSVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP  168 (967)
T ss_pred             cchhhhcceEEEEEc---CceEEEEecccCceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence            455567788888888   9999999998877666555 33221     22334566668999999999999998622111


Q ss_pred             ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeE-EEEeCCC
Q 036585          138 GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS-TYNVKPV  216 (304)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~  216 (304)
                      .                             .+.+|.+.+..+.++.||.++++.+.|..+++|++.+.+... ..-   +
T Consensus       169 ~-----------------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f---g  216 (967)
T KOG0974|consen  169 I-----------------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF---G  216 (967)
T ss_pred             c-----------------------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc---c
Confidence            1                             234799999999999999999999999999999999988766 222   6


Q ss_pred             CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccC-CCCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585          217 SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD-TEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       217 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~  292 (304)
                      |...+..++|.|+  .+++++.|.+.++|+. +++.+..+.+|. ..|..++..++...++|++.|  +++|++.....
T Consensus       217 HsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~  292 (967)
T KOG0974|consen  217 HSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL  292 (967)
T ss_pred             ccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence            8999999999998  9999999999999975 455566777775 468999999999999999999  99998865543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=5.1e-12  Score=103.92  Aligned_cols=255  Identities=12%  Similarity=0.150  Sum_probs=178.1

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCc---------------ceeeeecccccceeEEEEccCCCeEEEEecCCCCCc
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAA---------------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   83 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~   83 (304)
                      ..+.|.....|+|.|+.||.++|..+.+.               ..-+++.+|...|..+.|+.+...|-+...   +|.
T Consensus        18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt---~Gl   94 (1189)
T KOG2041|consen   18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT---SGL   94 (1189)
T ss_pred             EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC---Cce
Confidence            45788888999999999999999987642               122568899999999999998888888877   999


Q ss_pred             eEEEEccCceeeeecc--cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec-eEEEeccceeEecCCC--eEEE
Q 036585           84 LRLLSLHDNKYSRYFK--GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQGRPAAAYDDQG--LVFG  158 (304)
Q Consensus        84 i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~  158 (304)
                      |.+|-+-.+.....+.  ....-|.+++|..+|..+...-.||.|.+=.++..+... .++......+.++++.  .++.
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~  174 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFK  174 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhh
Confidence            9999998886544433  345678999999999999888888888776554332211 1111112233444443  2334


Q ss_pred             ecCCCeEEEEecCC--------------------CCCceEEEE--------ecCCcEEEEeeCCCeEEEEEcCCCceeEE
Q 036585          159 YEKGPLDIFSVGGD--------------------ISDANVVKF--------SNDGRLMLLTTMEGHIHVLDSFRGTLLST  210 (304)
Q Consensus       159 ~~~~~~~~~~~~~~--------------------~~~v~~~~~--------~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  210 (304)
                      ..++...+++.++.                    ...+-.+.|        -|+...|+++..+|.+.+..-.+......
T Consensus       175 ~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv  254 (1189)
T KOG2041|consen  175 KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVV  254 (1189)
T ss_pred             hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeE
Confidence            44455555544331                    112334444        25778899999999988876554443333


Q ss_pred             EEeCCCCCCcceEEEEcCCCcEEEEecCC---------CcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585          211 YNVKPVSRNSTLEASFSPEGMFVISGSGD---------GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       211 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      +.    ....+..+.|+|+|..||.++.+         +.|.+|.. -|+.+..++.....|++++|-..|-.++.+-..
T Consensus       255 ~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Avds  329 (1189)
T KOG2041|consen  255 VD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDS  329 (1189)
T ss_pred             Ee----cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecc
Confidence            43    34678889999999999998754         25666653 577788888888899999998877666655443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.52  E-value=2.2e-12  Score=94.82  Aligned_cols=217  Identities=15%  Similarity=0.098  Sum_probs=151.6

Q ss_pred             EEEEeeCCCeEEEEecCCcceeeeeccc------ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc--eeeeeccc
Q 036585           29 YLVTASDDESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KYSRYFKG  100 (304)
Q Consensus        29 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~--~~~~~~~~  100 (304)
                      .++-+-.+|.|.++..........+++-      .....++.|++.+..++++-.   +|.+.+-+....  +.++.++.
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s---~G~~~~v~~t~~~le~vq~wk~  163 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDS---RGSISGVYETEMVLEKVQTWKV  163 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcC---CCcEEEEecceeeeeecccccc
Confidence            5566677788888876644433333321      113557889999999999888   888886655444  34457889


Q ss_pred             ccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585          101 HHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV  179 (304)
Q Consensus       101 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  179 (304)
                      |.-+++.+.|+. +.+.+++|+.|+.+..||+|... ...+.                          +..-|...|.++
T Consensus       164 He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~--------------------------n~kvH~~GV~SI  216 (339)
T KOG0280|consen  164 HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWH--------------------------NSKVHTSGVVSI  216 (339)
T ss_pred             cceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeee--------------------------cceeeecceEEE
Confidence            999999999985 55789999999999999999433 11111                          012366788888


Q ss_pred             EEec-CCcEEEEeeCCCeEEEEEcC-CCceeEEEEeCCCCCCcceEEEEcCC--CcEEEEecCCCcEEEEecCCCce---
Q 036585          180 KFSN-DGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPE--GMFVISGSGDGSVHAWSVRSGKE---  252 (304)
Q Consensus       180 ~~~~-~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~~---  252 (304)
                      .-+| .+.++++|+.|-.|++||.+ -++++..-.    ..+.|..+.++|.  +..|+++..+| .+|-+...+..   
T Consensus       217 ~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~----v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~  291 (339)
T KOG0280|consen  217 YSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK----VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQ  291 (339)
T ss_pred             ecCCCCCceEEEeccccceeeeehhcccCccccCc----cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchh
Confidence            8876 57799999999999999998 466666554    5589999999994  34455555555 67777655322   


Q ss_pred             --eeeeeccCCCCceEEeCCCCcEEEEecC
Q 036585          253 --VASWMSFDTEPPVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       253 --~~~~~~~~~~i~~~~~~~~~~~l~s~~~  280 (304)
                        ....+.|.+-...-.|..-...|+|++.
T Consensus       292 ~~~~s~~~hdSl~YG~DWd~~~~~lATCsF  321 (339)
T KOG0280|consen  292 IVLPSDKIHDSLCYGGDWDSKDSFLATCSF  321 (339)
T ss_pred             eeeeccccccceeeccccccccceeeeeec
Confidence              3334566666666667555567888663

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.51  E-value=1.4e-10  Score=88.16  Aligned_cols=236  Identities=11%  Similarity=0.170  Sum_probs=152.6

Q ss_pred             CCeEEEEecCCcc--e-eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC--ceeee--ecccccccEEEE
Q 036585           36 DESIRLYDVTAAT--C-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--NKYSR--YFKGHHDRVVLL  108 (304)
Q Consensus        36 d~~i~vw~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~--~~~~~--~~~~~~~~v~~~  108 (304)
                      +.-|.+|++.+..  . ...+-.....++-|+|+|+.+.|.++...+.+|.|.-|.+..  |+...  .......+-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            3459999987322  1 112223556788999999999999998865578888887765  44321  111122334789


Q ss_pred             EEcCCCCEEEEccc-CCeEEEEeCCcc-eeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCc
Q 036585          109 SLCSSKDCFISGSL-DRTVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGR  186 (304)
Q Consensus       109 ~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (304)
                      ++++++++++++.. -|.|.++-++.. .............             .+ .   ..+....-+....+.|+++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g-------------~~-p---~~rQ~~~h~H~a~~tP~~~  157 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTG-------------SG-P---HERQESPHVHSANFTPDGR  157 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCC-------------CC-C---CccccCCccceeeeCCCCC
Confidence            99999999888864 578999988653 3322211100000             00 0   0001122377889999999


Q ss_pred             EEEEeeC-CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecCCC-ceeeeeecc----
Q 036585          187 LMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVRSG-KEVASWMSF----  259 (304)
Q Consensus       187 ~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~-~~~~~~~~~----  259 (304)
                      +|++... .-+|.+|++..++....-...-.......-+.|+|++++.+..+ -+++|.+|..... ..+..++.+    
T Consensus       158 ~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP  237 (346)
T COG2706         158 YLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP  237 (346)
T ss_pred             EEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence            9888754 23799999998776554332223455667799999999988776 4889999998763 223333221    


Q ss_pred             -----CCCCceEEeCCCCcEEEEecCc---eEEeccC
Q 036585          260 -----DTEPPVIKWAPGSLMFVTGSSE---LSFWIPD  288 (304)
Q Consensus       260 -----~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~  288 (304)
                           ......|..+|||++|+++...   |.++.++
T Consensus       238 ~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         238 EDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             cccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence                 2345678899999999988655   6666543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.50  E-value=6.2e-10  Score=85.33  Aligned_cols=219  Identities=12%  Similarity=0.086  Sum_probs=142.3

Q ss_pred             eEeecc-cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEc-cCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           20 ILQSME-VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT-SHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        20 ~i~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      .+.+.+ .+.++++--..+.|..|+..+++... +....  ...+++. ++ ..++.+.    .+.+.++|..+++....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~----~~~~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVAD----SGGIAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEE----TTCEEEEETTTTEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEE----cCceEEEecCCCcEEEE
Confidence            445665 77888888788999999988765533 22222  6677777 55 4555555    44556669988864433


Q ss_pred             ccc-----ccccEEEEEEcCCCCEEEEcccC--------CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585           98 FKG-----HHDRVVLLSLCSSKDCFISGSLD--------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL  164 (304)
Q Consensus        98 ~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (304)
                      ...     .......+++.|+|++.++....        |.+..++.. ++......                       
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-----------------------  131 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-----------------------  131 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-----------------------
T ss_pred             eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-----------------------
Confidence            332     33467899999999977765433        557777766 33322222                       


Q ss_pred             EEEEecCCCCCceEEEEecCCcEEE-EeeCCCeEEEEEcCCCce--e--EEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585          165 DIFSVGGDISDANVVKFSNDGRLML-LTTMEGHIHVLDSFRGTL--L--STYNVKPVSRNSTLEASFSPEGMFVISGSGD  239 (304)
Q Consensus       165 ~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~--~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  239 (304)
                             .....+.++|+|+++.|+ +-+..+.|..|++.....  .  ..+.......+..-.++++.+|++.++....
T Consensus       132 -------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~  204 (246)
T PF08450_consen  132 -------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG  204 (246)
T ss_dssp             -------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred             -------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence                   113457899999998776 456788999999864322  1  2222111222347789999999988877778


Q ss_pred             CcEEEEecCCCceeeeeeccCCCCceEEe-CCCCcEEEEe
Q 036585          240 GSVHAWSVRSGKEVASWMSFDTEPPVIKW-APGSLMFVTG  278 (304)
Q Consensus       240 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~  278 (304)
                      +.|.++|.+ ++.+..+......+++++| .++.+.|+..
T Consensus       205 ~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  205 GRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             TEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             CEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            899999976 8888888766568999999 4665555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.50  E-value=3e-11  Score=94.87  Aligned_cols=216  Identities=15%  Similarity=0.178  Sum_probs=157.6

Q ss_pred             ecccCcEEEEeeCCCeEEEEecCCcceeeeec-c---c---c-----cceeEEE-Ecc-CCCeEEEEecCCCCCceEEEE
Q 036585           23 SMEVGIYLVTASDDESIRLYDVTAATCLKTIN-S---K---K-----YGVDLVC-FTS-HPTTVIYSSKNGWDESLRLLS   88 (304)
Q Consensus        23 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~---~---~-----~~v~~~~-~~~-~~~~l~~~~~~~~d~~i~vwd   88 (304)
                      ...||+.++.. .-|.|.+||.++.++.. +. +   .   .     .+..-+. |++ +|.+++..+    .|...+.+
T Consensus       274 ~nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS----RGkaFi~~  347 (668)
T COG4946         274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS----RGKAFIMR  347 (668)
T ss_pred             cCCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEe----cCcEEEEC
Confidence            34568777654 34789999987654322 11 0   0   0     1111222 333 678888888    78888888


Q ss_pred             ccCceeeeecccccccEEEEEEcCCCCEEEEcccCC-eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585           89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF  167 (304)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (304)
                      ...+-.++.  +|.+.|.-..+..+++-++.|..|| .+-++|.++++.....                           
T Consensus       348 ~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e---------------------------  398 (668)
T COG4946         348 PWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE---------------------------  398 (668)
T ss_pred             CCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee---------------------------
Confidence            766654432  4677788888888888899999999 8999999887654332                           


Q ss_pred             EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC----cEE
Q 036585          168 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG----SVH  243 (304)
Q Consensus       168 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~  243 (304)
                         ..-+.|.++..+|+|++++++.....|.++|+.+++....-+   ...+-|+.+.|+|+++++|-+--+|    .|+
T Consensus       399 ---~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk---S~~~lItdf~~~~nsr~iAYafP~gy~tq~Ik  472 (668)
T COG4946         399 ---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK---SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIK  472 (668)
T ss_pred             ---CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc---cccceeEEEEEcCCceeEEEecCcceeeeeEE
Confidence               344678999999999999999999999999999998765544   4667899999999999999887665    699


Q ss_pred             EEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecC
Q 036585          244 AWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       244 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  280 (304)
                      ++|+.+++.... ....+.=.+-+|.||+++|.--+.
T Consensus       473 lydm~~~Kiy~v-TT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         473 LYDMDGGKIYDV-TTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             EEecCCCeEEEe-cCCcccccCcccCCCCcEEEEEec
Confidence            999988776443 333344456789999998876553

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.50  E-value=3.1e-11  Score=87.90  Aligned_cols=234  Identities=11%  Similarity=-0.012  Sum_probs=156.5

Q ss_pred             CcEEEEeeCCCeEEEEecCCccee-eeecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEccCceeeeecccccc-
Q 036585           27 GIYLVTASDDESIRLYDVTAATCL-KTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHD-  103 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-  103 (304)
                      ..+||.|+..|...+|...+.+.. +....|...|.-+.=..+ ...+..++.   |.++++.+++.+..-...  |.. 
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sn---dht~k~~~~~~~s~~~~~--h~~~  158 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASN---DHTGKTMVVSGDSNKFAV--HNQN  158 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccC---CcceeEEEEecCccccee--eccc
Confidence            458999999999999999866543 333344443332221112 223555555   889999988755332222  333 


Q ss_pred             -cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEe
Q 036585          104 -RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS  182 (304)
Q Consensus       104 -~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  182 (304)
                       .+.++.++++++++++.+....|..|.+........-..                          .......-.+..|+
T Consensus       159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~--------------------------~a~t~D~gF~~S~s  212 (344)
T KOG4532|consen  159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY--------------------------EAPTSDHGFYNSFS  212 (344)
T ss_pred             cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE--------------------------ecccCCCceeeeec
Confidence             378899999999999999999999998875433221100                          01122334567899


Q ss_pred             cCCcEEEEeeCCCeEEEEEcCCCceeEEEE--eCCCCCCcceEEEEcCCCc--EEEEecCCCcEEEEecCCCceeeeee-
Q 036585          183 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYN--VKPVSRNSTLEASFSPEGM--FVISGSGDGSVHAWSVRSGKEVASWM-  257 (304)
Q Consensus       183 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~v~d~~~~~~~~~~~-  257 (304)
                      .....+|++..||++.+||++.........  ..+.|.+.+..+.|+|.|.  +|+..-.-+.+++-|+++++..+.+. 
T Consensus       213 ~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i  292 (344)
T KOG4532|consen  213 ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI  292 (344)
T ss_pred             cCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence            999999999999999999998755433222  3345889999999998663  45555556789999999987654442 


Q ss_pred             ------ccCC-CCceEEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585          258 ------SFDT-EPPVIKWAPGSLMFVTGSSE-LSFWIPDLSK  291 (304)
Q Consensus       258 ------~~~~-~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~  291 (304)
                            .|.. .|..-.|+.++.-+.+.+++ +.=|.+..+.
T Consensus       293 ~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~srs  334 (344)
T KOG4532|consen  293 PDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSRS  334 (344)
T ss_pred             CccccccccccccccccccCCCcccccccchhhheeeccccc
Confidence                  2333 37888888888877777776 5556554443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.50  E-value=1.6e-10  Score=104.51  Aligned_cols=254  Identities=11%  Similarity=0.124  Sum_probs=158.8

Q ss_pred             eEeecc-cCcEEEEeeCCCeEEEEecCCcceeeeecc-c-------------ccceeEEEEccCCCeEEEEecCCCCCce
Q 036585           20 ILQSME-VGIYLVTASDDESIRLYDVTAATCLKTINS-K-------------KYGVDLVCFTSHPTTVIYSSKNGWDESL   84 (304)
Q Consensus        20 ~i~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~~~~~~~d~~i   84 (304)
                      -+.+.+ +|+++++-+.++.|+++|.. ++.+..+.+ .             -.....+++.+++..|+++...  .+.|
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~--n~~I  648 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE--NHAL  648 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC--CceE
Confidence            355554 46677777788899999975 444433322 1             1235789999988877776542  6789


Q ss_pred             EEEEccCceeeeecccc-----------------cccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccc
Q 036585           85 RLLSLHDNKYSRYFKGH-----------------HDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP  146 (304)
Q Consensus        85 ~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  146 (304)
                      +++|+.++. +.++.+-                 -.....++++| ++..+++.+.++.|++||..++... .+..    
T Consensus       649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G----  722 (1057)
T PLN02919        649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG----  722 (1057)
T ss_pred             EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec----
Confidence            999987764 2222110                 11236789999 5666677778899999998776432 1111    


Q ss_pred             eeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEE-EeeCCCeEEEEEcCCCceeEEEEeC-----------
Q 036585          147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLML-LTTMEGHIHVLDSFRGTLLSTYNVK-----------  214 (304)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~-----------  214 (304)
                            ++..... .+...   ....-.....++++|+++.|+ +-+.++.|++||+.++.........           
T Consensus       723 ------~G~~~~~-~g~~~---~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG  792 (1057)
T PLN02919        723 ------DGYERNL-NGSSG---TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFG  792 (1057)
T ss_pred             ------CCccccC-CCCcc---ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccccc
Confidence                  1100000 00000   001123467799999998555 4556789999999876532211000           


Q ss_pred             --C-----CCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee-------------ccCCCCceEEeCCCCcE
Q 036585          215 --P-----VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM-------------SFDTEPPVIKWAPGSLM  274 (304)
Q Consensus       215 --~-----~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~  274 (304)
                        .     ..-.....++++++|+.+++-..++.|++||..++.......             +.-.....++++++|+.
T Consensus       793 ~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~l  872 (1057)
T PLN02919        793 DHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRL  872 (1057)
T ss_pred             CCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCE
Confidence              0     001134578999999988888889999999998765532211             11235788999999987


Q ss_pred             EEEecCc--eEEeccCCccc
Q 036585          275 FVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       275 l~s~~~d--~~iw~~~~~~~  292 (304)
                      +++-+.+  |++|+.+..++
T Consensus       873 yVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        873 FVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEECCCCEEEEEECCCCcc
Confidence            7776666  99998876544

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.49  E-value=2.9e-12  Score=96.32  Aligned_cols=235  Identities=14%  Similarity=0.228  Sum_probs=147.8

Q ss_pred             ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce-----eeeecccc------------cccEEEEEEcCCCC--EE
Q 036585           57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-----YSRYFKGH------------HDRVVLLSLCSSKD--CF  117 (304)
Q Consensus        57 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~~--~l  117 (304)
                      ..-+.++.|...|.+|++|..   +|.|.++.-....     ....++.|            ...|..+.|.++++  .+
T Consensus        25 adiis~vef~~~Ge~LatGdk---gGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDK---GGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             hcceeeEEeecccceEeecCC---CCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            346889999999999999998   8999998654322     22233333            34678899988654  67


Q ss_pred             EEcccCCeEEEEeCCcceeece---EEEeccc-------eeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcE
Q 036585          118 ISGSLDRTVLLWDQRAEKCQGL---LRVQGRP-------AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRL  187 (304)
Q Consensus       118 ~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  187 (304)
                      +..+.|.+|++|.+........   +.....+       .....+....+  .....+++ -..|..-|+++.++.|.+.
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v--ea~prRv~-aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV--EASPRRVY-ANAHTYHINSISVNSDKET  178 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee--eeeeeeec-cccceeEeeeeeecCccce
Confidence            7888999999999865433220   0000000       00000000000  00111111 1357788999999999997


Q ss_pred             EEEeeCCCeEEEEEcCCCceeEEE-EeCCCC----CCcceEEEEcCC-CcEEEEecCCCcEEEEecCCCce------eee
Q 036585          188 MLLTTMEGHIHVLDSFRGTLLSTY-NVKPVS----RNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGKE------VAS  255 (304)
Q Consensus       188 l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~----~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~------~~~  255 (304)
                      ++++ .|=.|.+|++.--.....+ ...+..    ..-|++..|+|. .+.++-.+..|+|++-|++...+      +..
T Consensus       179 ~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE  257 (433)
T KOG1354|consen  179 FLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE  257 (433)
T ss_pred             Eeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence            7765 5678999998643322222 222111    235888999994 45677777899999999984321      111


Q ss_pred             ----------eeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCc--cccccccC
Q 036585          256 ----------WMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLS--KLGAYVGR  298 (304)
Q Consensus       256 ----------~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~--~~~~~~~~  298 (304)
                                +..--..|..+.|+++|+++++-+.- +++||++++  .+..+.-|
T Consensus       258 epedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             cccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeeh
Confidence                      11223568899999999999988877 999999654  34444433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.47  E-value=1.1e-10  Score=95.36  Aligned_cols=245  Identities=13%  Similarity=0.077  Sum_probs=143.1

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeE-EEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDL-VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR  104 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  104 (304)
                      ++..++.++.++.+..+|.++|+.+....... .+.+ ...  .+..++.+..   ++.++.||.++++.+..+......
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~---~g~l~a~d~~tG~~~W~~~~~~~~  177 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTN---DGRLTALDAATGERLWTYSRVTPA  177 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECC---CCeEEEEEcCCCceeeEEccCCCc
Confidence            35566777777788888877777765544322 1211 111  3456666666   899999999998876665432221


Q ss_pred             EE-----EEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc-------------ceeEecCCCeEEEecCCCeEE
Q 036585          105 VV-----LLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------------PAAAYDDQGLVFGYEKGPLDI  166 (304)
Q Consensus       105 v~-----~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~  166 (304)
                      +.     +...  .+..++.+..++.+..+|.++++..........             .......+..++...++.+..
T Consensus       178 ~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a  255 (377)
T TIGR03300       178 LTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA  255 (377)
T ss_pred             eeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence            11     1111  124677888889999999998877654432110             011122222333333444444


Q ss_pred             EEecCC-------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585          167 FSVGGD-------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD  239 (304)
Q Consensus       167 ~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  239 (304)
                      ++....       .......  ...+..+++++.+|.++.+|..+++.+......  ..........  .+..|++++.+
T Consensus       256 ~d~~tG~~~W~~~~~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~--~~~~~ssp~i--~g~~l~~~~~~  329 (377)
T TIGR03300       256 LDLRSGRVLWKRDASSYQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDEL--KYRQLTAPAV--VGGYLVVGDFE  329 (377)
T ss_pred             EECCCCcEEEeeccCCccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccc--cCCccccCEE--ECCEEEEEeCC
Confidence            443211       0111111  224667888889999999999999877665311  1111222222  46688999999


Q ss_pred             CcEEEEecCCCceeeeeeccCCCCc-eEEeCCCCcEEEEecCceEEec
Q 036585          240 GSVHAWSVRSGKEVASWMSFDTEPP-VIKWAPGSLMFVTGSSELSFWI  286 (304)
Q Consensus       240 g~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~~d~~iw~  286 (304)
                      |.|+++|..+++.+.++..+...+. +..+. ++ .|+.++.|.+|+.
T Consensus       330 G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~  375 (377)
T TIGR03300       330 GYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYA  375 (377)
T ss_pred             CEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEE
Confidence            9999999999999988876654432 22332 33 3666666655543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.45  E-value=2.8e-11  Score=89.20  Aligned_cols=223  Identities=12%  Similarity=0.096  Sum_probs=145.4

Q ss_pred             CCCeEEEEecCCcceee--eec-ccccceeEEEEcc---CCC-eEEEEecCCCCCceEEEEccCceeeeeccccc-----
Q 036585           35 DDESIRLYDVTAATCLK--TIN-SKKYGVDLVCFTS---HPT-TVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH-----  102 (304)
Q Consensus        35 ~d~~i~vw~~~~~~~~~--~~~-~~~~~v~~~~~~~---~~~-~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-----  102 (304)
                      ..|.+.+|++.+.+...  +++ .....+..+.|..   ++. .++-+-.   +|.|.++.....+....+.+-.     
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a---~G~i~~~r~~~~~ss~~L~~ls~~ki~  120 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHA---RGQIQLYRNDEDESSVHLRGLSSKKIS  120 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccc---cceEEEEeeccceeeeeecccchhhhh
Confidence            34678889887765443  222 2334667777763   344 3444444   8999999876554433333221     


Q ss_pred             -ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEE
Q 036585          103 -DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF  181 (304)
Q Consensus       103 -~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  181 (304)
                       ....++.|++.+..++++..+|.+.+-+..........                           ..+.|+.+.....|
T Consensus       121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq---------------------------~wk~He~E~Wta~f  173 (339)
T KOG0280|consen  121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQ---------------------------TWKVHEFEAWTAKF  173 (339)
T ss_pred             heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecc---------------------------cccccceeeeeeec
Confidence             13567889998989999988898885554433322211                           11245556666777


Q ss_pred             ec-CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEecCC-Cceeeeeec
Q 036585          182 SN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWSVRS-GKEVASWMS  258 (304)
Q Consensus       182 ~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~  258 (304)
                      +. +.+.+.+|+.|+.+..||++..+ ...+.....|...|.++.-+| .+.++++|+.|-.|++||.++ ++++..-. 
T Consensus       174 ~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-  251 (339)
T KOG0280|consen  174 SDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-  251 (339)
T ss_pred             ccCCCceEEecCCCceEEEEEecCCc-ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-
Confidence            65 34688999999999999999333 223332335788899998887 578999999999999999985 56655443 


Q ss_pred             cCCCCceEEeCCCC--cEEEEecCc-eEEeccCC
Q 036585          259 FDTEPPVIKWAPGS--LMFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       259 ~~~~i~~~~~~~~~--~~l~s~~~d-~~iw~~~~  289 (304)
                      -.+.|+.+.++|.-  +.|+++-.+ .+|-+.+.
T Consensus       252 v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~  285 (339)
T KOG0280|consen  252 VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSD  285 (339)
T ss_pred             cccceEEEEecchhhhHHHHHHHhcCceEEEecc
Confidence            44789999999953  344444444 55555443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.45  E-value=2.8e-13  Score=108.10  Aligned_cols=199  Identities=15%  Similarity=0.255  Sum_probs=146.8

Q ss_pred             eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC-------ceeeeecccccccEEEEEEcCCCCEEEEccc
Q 036585           50 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-------NKYSRYFKGHHDRVVLLSLCSSKDCFISGSL  122 (304)
Q Consensus        50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  122 (304)
                      +..+.+|...|..++--.+.+.+++++.   |.+|++|.++.       ..+..+++.|+.+|..+.|..+.++++++  
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASk---DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--  802 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASK---DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--  802 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccC---CceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence            3456789888988887778888999998   99999999864       23567788999999999999988887765  


Q ss_pred             CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec--CCcEEEEe-eCCCeEEE
Q 036585          123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN--DGRLMLLT-TMEGHIHV  199 (304)
Q Consensus       123 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~~  199 (304)
                      ||.|.+||.--++....+....                           ..+.+..+..-+  +...+..+ +...+|++
T Consensus       803 D~giHlWDPFigr~Laq~~dap---------------------------k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl  855 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMEDAP---------------------------KEGAGGNIKCLENVDRHILIAGCSAESTVKL  855 (1034)
T ss_pred             cCcceeecccccchhHhhhcCc---------------------------ccCCCceeEecccCcchheeeeccchhhhee
Confidence            7889999987766655332111                           112233333333  33444444 67889999


Q ss_pred             EEcCCCceeEEEEeC--CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEE
Q 036585          200 LDSFRGTLLSTYNVK--PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVT  277 (304)
Q Consensus       200 ~d~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  277 (304)
                      +|.+..+....++..  ++....+.+++..|.|++++++-.+|+|.+.|.++|+.+..++........++ .|..+.|+.
T Consensus       856 ~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~  934 (1034)
T KOG4190|consen  856 FDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQ  934 (1034)
T ss_pred             eecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHh
Confidence            999999888887753  44556788999999999999999999999999999998887765554444444 344445554


Q ss_pred             ecCc
Q 036585          278 GSSE  281 (304)
Q Consensus       278 ~~~d  281 (304)
                      ...|
T Consensus       935 sald  938 (1034)
T KOG4190|consen  935 SALD  938 (1034)
T ss_pred             hccc
Confidence            4444

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=1.6e-12  Score=103.86  Aligned_cols=213  Identities=16%  Similarity=0.254  Sum_probs=154.4

Q ss_pred             eeeecceeeEe---ecccCcEEEEeeCCCeEEEEecCC-------cceeeeecccccceeEEEEccCCCeEEEEecCCCC
Q 036585           12 VSLELSEEILQ---SMEVGIYLVTASDDESIRLYDVTA-------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD   81 (304)
Q Consensus        12 ~~~~~~~~~i~---~~~~~~~l~~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d   81 (304)
                      ..+.+|.+.++   ...+.+-+++++.|.+|++|.++.       ..+..+++.|+.+|+.+.|-.+-+.++++     |
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-----D  803 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-----D  803 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-----c
Confidence            34455665544   344578899999999999999863       34667889999999999999888887776     8


Q ss_pred             CceEEEEccCceeeeecc--cccccEEEEEEcC--CCCEEEEc-ccCCeEEEEeCCcceeeceEEEeccceeEecCCCeE
Q 036585           82 ESLRLLSLHDNKYSRYFK--GHHDRVVLLSLCS--SKDCFISG-SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV  156 (304)
Q Consensus        82 ~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (304)
                      +.|.+||.--++++..+.  ...+.+..+...|  +...++.+ +...+|+++|.+.......++.-..           
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna-----------  872 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA-----------  872 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC-----------
Confidence            999999987776655332  1112233333333  34444444 7889999999998877666553322           


Q ss_pred             EEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585          157 FGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                                   .+....+++++..+.|++++++-.+|.|.+.|.++|+.+..+.   ...-....++ .|..+.|+..
T Consensus       873 -------------~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr---pmecdllqla-apsdq~L~~s  935 (1034)
T KOG4190|consen  873 -------------PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR---PMECDLLQLA-APSDQALAQS  935 (1034)
T ss_pred             -------------CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC---cccchhhhhc-CchhHHHHhh
Confidence                         1344678899999999999999999999999999999888777   3444454454 4666788888


Q ss_pred             cCCCcEEE-EecCCCceeeeee
Q 036585          237 SGDGSVHA-WSVRSGKEVASWM  257 (304)
Q Consensus       237 ~~dg~i~v-~d~~~~~~~~~~~  257 (304)
                      ..|.++.+ |..-++....+.+
T Consensus       936 aldHslaVnWhaldgimh~q~k  957 (1034)
T KOG4190|consen  936 ALDHSLAVNWHALDGIMHLQDK  957 (1034)
T ss_pred             cccceeEeeehhcCCeeeeccC
Confidence            88999988 8877766554443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.40  E-value=1e-09  Score=89.71  Aligned_cols=247  Identities=16%  Similarity=0.121  Sum_probs=148.6

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV  105 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v  105 (304)
                      .+..+++++.+|.+..+|..+|+.+-..............  ++..+++++.   ++.+..+|..+|+.+...... +.+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~-~~~  137 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE---KGEVIALDAEDGKELWRAKLS-SEV  137 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC---CCEEEEEECCCCcEeeeeccC-cee
Confidence            4778888999999999999999988665544322222222  5677888877   999999999999877655422 222


Q ss_pred             EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc-------eeEecCCCeEEEecCCCeEEEEecCCC-----
Q 036585          106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-------AAAYDDQGLVFGYEKGPLDIFSVGGDI-----  173 (304)
Q Consensus       106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  173 (304)
                      .+.-.. .+..++.++.++.++.||.++++.+.........       ......+..+++..++.+..++.....     
T Consensus       138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence            211111 2456777788999999999998877665443211       111111222233333333333321100     


Q ss_pred             ----C----C---ceEEEEec--CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC
Q 036585          174 ----S----D---ANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG  240 (304)
Q Consensus       174 ----~----~---v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  240 (304)
                          .    .   ...+.-+|  .+..+++++.+|.++.||..+++.+.....    .. .....  .++..++.++.+|
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~----~~-~~~p~--~~~~~vyv~~~~G  289 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA----SS-YQGPA--VDDNRLYVTDADG  289 (377)
T ss_pred             ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc----CC-ccCce--EeCCEEEEECCCC
Confidence                0    0   00011111  345788888899999999999987766552    11 11122  2466788888999


Q ss_pred             cEEEEecCCCceeeeeeccCC-CCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          241 SVHAWSVRSGKEVASWMSFDT-EPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       241 ~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      .++.+|..+++.+........ ...+...  .+..+++++.+  +.+++.+
T Consensus       290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE  338 (377)
T ss_pred             eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence            999999999987765522211 2222222  34577777766  5556554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.40  E-value=2e-10  Score=90.37  Aligned_cols=192  Identities=13%  Similarity=0.107  Sum_probs=138.6

Q ss_pred             EEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc-----------ccccEEEEE-EcC-CCCEEEEcccCCeEEEE
Q 036585           63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG-----------HHDRVVLLS-LCS-SKDCFISGSLDRTVLLW  129 (304)
Q Consensus        63 ~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~-----------~~~~v~~~~-~~~-~~~~l~~~~~dg~i~iw  129 (304)
                      -..+.||+.++...    .|.|.+||..+.+..+.--+           ...+..-+. |++ +|.+++..+. |...+.
T Consensus       272 R~~nsDGkrIvFq~----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~  346 (668)
T COG4946         272 RNANSDGKRIVFQN----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM  346 (668)
T ss_pred             cccCCCCcEEEEec----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence            34466898888876    78999999887543221100           001111122 343 6777777776 666666


Q ss_pred             eCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCC-eEEEEEcCCCcee
Q 036585          130 DQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLL  208 (304)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~  208 (304)
                      +...+-.++.                               ++...|.-..+..+++-++.|..|| .+-+||.++++..
T Consensus       347 ~~~~~~~iqv-------------------------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k  395 (668)
T COG4946         347 RPWDGYSIQV-------------------------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK  395 (668)
T ss_pred             CCCCCeeEEc-------------------------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE
Confidence            6544433221                               3445677777877888899999999 8999999887654


Q ss_pred             EEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc------e
Q 036585          209 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE------L  282 (304)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d------~  282 (304)
                      .. .   ..-+.|.++..+|+|++++.+.....|.+.|+.+++....-+...+-|+.+.|||+++++|-+--+      |
T Consensus       396 r~-e---~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~I  471 (668)
T COG4946         396 RI-E---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSI  471 (668)
T ss_pred             Ee-e---CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeE
Confidence            43 3   366889999999999999999999999999999998755555667789999999999999988655      8


Q ss_pred             EEeccCCccccc
Q 036585          283 SFWIPDLSKLGA  294 (304)
Q Consensus       283 ~iw~~~~~~~~~  294 (304)
                      ++++.+..++-.
T Consensus       472 klydm~~~Kiy~  483 (668)
T COG4946         472 KLYDMDGGKIYD  483 (668)
T ss_pred             EEEecCCCeEEE
Confidence            999988876543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.35  E-value=8e-12  Score=112.00  Aligned_cols=194  Identities=17%  Similarity=0.218  Sum_probs=146.1

Q ss_pred             cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcc
Q 036585           56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAE  134 (304)
Q Consensus        56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  134 (304)
                      +-..|.++.-+|...+.++|+.   ||.+++|....++.+..++ .-...|+.+.|+.+|+.+..+..||.+.+|... .
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~---dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQ---DGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCC---CceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            4457888888999999999998   9999999999888777665 223789999999999999999999999999876 2


Q ss_pred             eeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEe---eCCCeEEEEEcCCCceeEEE
Q 036585          135 KCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLT---TMEGHIHVLDSFRGTLLSTY  211 (304)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~~~d~~~~~~~~~~  211 (304)
                      +....                             .+.|......+.|-.  ..++++   +.++.+.+||..-.....-+
T Consensus      2283 k~~~s-----------------------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v 2331 (2439)
T KOG1064|consen 2283 KPYTS-----------------------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV 2331 (2439)
T ss_pred             cceec-----------------------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee
Confidence            11111                             123555666677754  445554   34678999996432222111


Q ss_pred             EeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          212 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       212 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      .  ..|.+.++++++-|..+.|++|+.+|.|++||++..+.+..++.         +. ...++++++..  ++||..+.
T Consensus      2332 ~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2332 H--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             e--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccc
Confidence            1  36999999999999999999999999999999998877766654         44 56788888887  99998864


Q ss_pred             -ccccccc
Q 036585          290 -SKLGAYV  296 (304)
Q Consensus       290 -~~~~~~~  296 (304)
                       ..+..+.
T Consensus      2400 ~~ll~~~p 2407 (2439)
T KOG1064|consen 2400 FGLLHTFP 2407 (2439)
T ss_pred             cchhhcCc
Confidence             3344443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.34  E-value=1.6e-09  Score=96.51  Aligned_cols=221  Identities=11%  Similarity=0.153  Sum_probs=147.0

Q ss_pred             ccceeEEEEccCCCeEEEEecCCCCCceEEE----EccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC
Q 036585           57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLL----SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR  132 (304)
Q Consensus        57 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  132 (304)
                      ...|.++.+-++...++.+..   +|.|.+.    +..+.. +.....-...|.+++||||+..|+..+.++++.+.+ +
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~---~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~  149 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALA---SGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-R  149 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEEC---CceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-c
Confidence            467999999999999999998   9999999    544432 222233457899999999999999999999988874 3


Q ss_pred             cceeeceEEEec-------cceeEecCCCeEEEecCCCe----------E---EEEecCCCCCceEEEEecCCcEEEEee
Q 036585          133 AEKCQGLLRVQG-------RPAAAYDDQGLVFGYEKGPL----------D---IFSVGGDISDANVVKFSNDGRLMLLTT  192 (304)
Q Consensus       133 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~v~~~~~~~~~~~l~~~~  192 (304)
                      +...+.......       ...+-|......+-...+..          .   .-.+. ....-..++|-.||++|++.+
T Consensus       150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss  228 (928)
T PF04762_consen  150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSS  228 (928)
T ss_pred             cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEE
Confidence            333333322211       11222322222221111110          0   01111 233556799999999999987


Q ss_pred             C---C---CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC---CCcEEEEecCCCceeeeee----cc
Q 036585          193 M---E---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG---DGSVHAWSVRSGKEVASWM----SF  259 (304)
Q Consensus       193 ~---d---g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~----~~  259 (304)
                      .   .   ..+++|+ +.|+...+-+   ...+--.+++|-|.|++||+...   ...|.+|. ++|-....+.    ..
T Consensus       229 ~~~~~~~~R~iRVy~-ReG~L~stSE---~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~  303 (928)
T PF04762_consen  229 VEPETGSRRVIRVYS-REGELQSTSE---PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPE  303 (928)
T ss_pred             EEcCCCceeEEEEEC-CCceEEeccc---cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCC
Confidence            5   2   4799999 4577655554   23344456899999999998854   34677887 5665544442    34


Q ss_pred             CCCCceEEeCCCCcEEEEecCc-eEEeccC
Q 036585          260 DTEPPVIKWAPGSLMFVTGSSE-LSFWIPD  288 (304)
Q Consensus       260 ~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~  288 (304)
                      ...|..++|++|+..||..-.| +.+|...
T Consensus       304 ~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~  333 (928)
T PF04762_consen  304 EEKVIELAWNSDSEILAVWLEDRVQLWTRS  333 (928)
T ss_pred             CceeeEEEECCCCCEEEEEecCCceEEEee
Confidence            5678999999999999998888 9999643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.34  E-value=1.2e-09  Score=86.68  Aligned_cols=263  Identities=11%  Similarity=0.122  Sum_probs=171.6

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCC------------CCCce
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG------------WDESL   84 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~------------~d~~i   84 (304)
                      ....+.++|.|.+|++....+ |.+|.......+..+..  ..|..+.|+|.+++|.+-....            .++.+
T Consensus        34 p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~--~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~  110 (561)
T COG5354          34 PVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRH--PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV  110 (561)
T ss_pred             chhheeecCcchheehhhccc-eEEccccchhheeeeec--CCceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence            344578899999999998876 99999887665555543  2699999999999999987632            23469


Q ss_pred             EEEEccCceeeeeccccccc--EE-EEEEcCCCCEEEEcccCCeEEEEeCCccee----eceEEEeccceeEecCCC---
Q 036585           85 RLLSLHDNKYSRYFKGHHDR--VV-LLSLCSSKDCFISGSLDRTVLLWDQRAEKC----QGLLRVQGRPAAAYDDQG---  154 (304)
Q Consensus        85 ~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~---  154 (304)
                      .+||..++..+..+.....+  .+ -+.|+-+.++++-. ....++|+++ +...    ...++..+...+.++|.+   
T Consensus       111 ~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~  188 (561)
T COG5354         111 FVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHD  188 (561)
T ss_pred             eEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCc
Confidence            99999999999988866655  55 67888888776655 3356899986 3221    122233333344444442   


Q ss_pred             -eEE-----EecCCCeEEEEecCCC---------CCceEEEEecCCcEEEEee-----------CCCeEEEEEcCCCcee
Q 036585          155 -LVF-----GYEKGPLDIFSVGGDI---------SDANVVKFSNDGRLMLLTT-----------MEGHIHVLDSFRGTLL  208 (304)
Q Consensus       155 -~~~-----~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~-----------~dg~i~~~d~~~~~~~  208 (304)
                       +.+     ......+.++.+....         ..=..+.|.+.|+++++--           .+..+++++++.....
T Consensus       189 ~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~  268 (561)
T COG5354         189 ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP  268 (561)
T ss_pred             eEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc
Confidence             111     1112334444443211         1123478888898776521           1245788887633222


Q ss_pred             EEEEeCCCCCCcceEEEEcCCCcEEEEe--cCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-----
Q 036585          209 STYNVKPVSRNSTLEASFSPEGMFVISG--SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-----  281 (304)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----  281 (304)
                      ...    ...++|...+|.|.++.+++.  -.+-.+.++|++.. ....  .....=+.+.|+|.+++++.++-|     
T Consensus       269 V~~----~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gn  341 (561)
T COG5354         269 VEK----DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGN  341 (561)
T ss_pred             eec----cccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccc
Confidence            221    357899999999988876654  46778999998765 3322  344455677889988888887766     


Q ss_pred             eEEeccCCcc
Q 036585          282 LSFWIPDLSK  291 (304)
Q Consensus       282 ~~iw~~~~~~  291 (304)
                      +.+|+...+.
T Consensus       342 i~i~~~~~rf  351 (561)
T COG5354         342 IEIFDPAGRF  351 (561)
T ss_pred             eEEeccCCce
Confidence            7777775543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=3.3e-09  Score=85.07  Aligned_cols=241  Identities=10%  Similarity=0.192  Sum_probs=143.0

Q ss_pred             eEEEEecCCcceeeeeccc---ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCC
Q 036585           38 SIRLYDVTAATCLKTINSK---KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSK  114 (304)
Q Consensus        38 ~i~vw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  114 (304)
                      .+.+|+............+   ..++...+++++|++++.+.    +..++|++..++..+......  .++++.|+|-+
T Consensus        12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~----~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g   85 (566)
T KOG2315|consen   12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD----NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKG   85 (566)
T ss_pred             eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc----CCeEEEEEccCCcEEEEeccc--eeeeeeecccc
Confidence            4788876543332222222   34577889999999998887    889999999888644444322  78999999999


Q ss_pred             CEEEEcc-----c-----CCeEEEEeCCcceeeceEEEeccc--eeEecCCCeEE-EecCCCeEEEEec--------CCC
Q 036585          115 DCFISGS-----L-----DRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVF-GYEKGPLDIFSVG--------GDI  173 (304)
Q Consensus       115 ~~l~~~~-----~-----dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~  173 (304)
                      .+|.+--     .     .-.+++|+++++.....+......  ...|+.+..+. -...+.+.++++.        -|.
T Consensus        86 ~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~  165 (566)
T KOG2315|consen   86 NYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSV  165 (566)
T ss_pred             cccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeec
Confidence            9887621     1     235789999985544433321111  22232222111 0111111222111        122


Q ss_pred             CCceE----------------------------------------------------EEEecCCcE-EEEee--CC----
Q 036585          174 SDANV----------------------------------------------------VKFSNDGRL-MLLTT--ME----  194 (304)
Q Consensus       174 ~~v~~----------------------------------------------------~~~~~~~~~-l~~~~--~d----  194 (304)
                      ..++.                                                    +.|++-|.- |+.++  .|    
T Consensus       166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~  245 (566)
T KOG2315|consen  166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA  245 (566)
T ss_pred             cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence            23333                                                    334443332 11111  11    


Q ss_pred             -----CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe--cCCCcEEEEecCCCceeeeeeccCCCCceEE
Q 036585          195 -----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG--SGDGSVHAWSVRSGKEVASWMSFDTEPPVIK  267 (304)
Q Consensus       195 -----g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  267 (304)
                           .+++++++........+    ...++|.++.|+|+++-++++  -.=-.+.|||++ ++++..+  ..++-+++-
T Consensus       246 SYYGEq~Lyll~t~g~s~~V~L----~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~  318 (566)
T KOG2315|consen  246 SYYGEQTLYLLATQGESVSVPL----LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAF  318 (566)
T ss_pred             cccccceEEEEEecCceEEEec----CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceE
Confidence                 24555555422222222    257899999999999876654  345679999974 5666555  467789999


Q ss_pred             eCCCCcEEEEecCc-----eEEeccCCcc
Q 036585          268 WAPGSLMFVTGSSE-----LSFWIPDLSK  291 (304)
Q Consensus       268 ~~~~~~~l~s~~~d-----~~iw~~~~~~  291 (304)
                      |+|.|++++.++-+     +.|||....+
T Consensus       319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K  347 (566)
T KOG2315|consen  319 FNPHGNIILLAGFGNLPGDMEVWDVPNRK  347 (566)
T ss_pred             ECCCCCEEEEeecCCCCCceEEEeccchh
Confidence            99999999988866     8999985533

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.33  E-value=5.3e-09  Score=93.28  Aligned_cols=265  Identities=14%  Similarity=0.192  Sum_probs=163.2

Q ss_pred             EeecccCcEEEEeeCCCeEEEE----ecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc------
Q 036585           21 LQSMEVGIYLVTASDDESIRLY----DVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH------   90 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~------   90 (304)
                      +.+.++...++.+..+|.|.+.    +..+.. +...-.-..+|.+++||||+..|+..+.   ++++.+.+-.      
T Consensus        81 ~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~---~~~l~~mt~~fd~i~E  156 (928)
T PF04762_consen   81 FQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTG---EGNLLLMTRDFDPISE  156 (928)
T ss_pred             EEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeC---CCEEEEEeccceEEEE
Confidence            4566778888888899999998    443322 2222223468999999999999999997   8787775421      


Q ss_pred             ---------C--------ceeeeeccc------------------------ccccEEEEEEcCCCCEEEEccc------C
Q 036585           91 ---------D--------NKYSRYFKG------------------------HHDRVVLLSLCSSKDCFISGSL------D  123 (304)
Q Consensus        91 ---------~--------~~~~~~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~------d  123 (304)
                               .        |+....|+|                        +.+.-..++|..||.+|++.+.      -
T Consensus       157 ~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~  236 (928)
T PF04762_consen  157 VPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSR  236 (928)
T ss_pred             eecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCce
Confidence                     0        010111110                        2224457889999999998764      2


Q ss_pred             CeEEEEeCCcceeeceEEE--eccceeEecCCCeEEEecC-----CCeEEEE----------ec--CCCCCceEEEEecC
Q 036585          124 RTVLLWDQRAEKCQGLLRV--QGRPAAAYDDQGLVFGYEK-----GPLDIFS----------VG--GDISDANVVKFSND  184 (304)
Q Consensus       124 g~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~----------~~--~~~~~v~~~~~~~~  184 (304)
                      ..+++|+-+ +........  .-...++|.|.|.++....     ..+.+|.          +.  .....|..+.|++|
T Consensus       237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~d  315 (928)
T PF04762_consen  237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSD  315 (928)
T ss_pred             eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCC
Confidence            579999854 443333221  1122566777765442221     1222222          21  24567899999999


Q ss_pred             CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC-cEEEEecCCCcEEEEecC----CCc--------
Q 036585          185 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVHAWSVR----SGK--------  251 (304)
Q Consensus       185 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~----~~~--------  251 (304)
                      +..|++...|. |.+|-..+.....+....-.....+..+.|+|.. ..|...+.+|.+..++..    .+.        
T Consensus       316 s~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g  394 (928)
T PF04762_consen  316 SEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNG  394 (928)
T ss_pred             CCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCce
Confidence            99999977654 9999988876554444322234445559999944 446666665666554431    110        


Q ss_pred             eeeee-----------------------eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          252 EVASW-----------------------MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       252 ~~~~~-----------------------~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      .+..+                       -....+|.+++|++++..+++-..|  +.+|.++...
T Consensus       395 ~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~  459 (928)
T PF04762_consen  395 TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN  459 (928)
T ss_pred             EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence            01100                       1235679999999998766665555  8888876543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.33  E-value=8.2e-09  Score=76.44  Aligned_cols=208  Identities=12%  Similarity=0.153  Sum_probs=123.5

Q ss_pred             eecccCcEEEEeeCCCeEEEEecCCc--ceeeee---cccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           22 QSMEVGIYLVTASDDESIRLYDVTAA--TCLKTI---NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        22 ~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ....+|+.||.- .|..|.|-..++.  ..+.+.   +...-.-.-++||||+..|+.+.+   .|+|+++|+...+.. 
T Consensus         4 ~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S---~G~i~vfdl~g~~lf-   78 (282)
T PF15492_consen    4 ALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES---TGTIRVFDLMGSELF-   78 (282)
T ss_pred             eecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC---CCeEEEEecccceeE-
Confidence            445678888776 4567777765432  122222   222334678999999999999998   999999999864432 


Q ss_pred             eccc-------ccccEEEEEEcCC------CCEEEEcccCCeEEEEeCCcce-----eeceEEEeccceeEecCCCeEEE
Q 036585           97 YFKG-------HHDRVVLLSLCSS------KDCFISGSLDRTVLLWDQRAEK-----CQGLLRVQGRPAAAYDDQGLVFG  158 (304)
Q Consensus        97 ~~~~-------~~~~v~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  158 (304)
                      .+..       -...|..+.|.+.      ...|++-..+|.++-|-+..+.     ....+....              
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~--------------  144 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS--------------  144 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc--------------
Confidence            2221       2346677777642      1256666677777777653221     111221110              


Q ss_pred             ecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCC-----------eEEEEEcCCCce--------------------
Q 036585          159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----------HIHVLDSFRGTL--------------------  207 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i~~~d~~~~~~--------------------  207 (304)
                                  .....|+++.++|..++|++|+...           -+.-|.+-++.+                    
T Consensus       145 ------------~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~  212 (282)
T PF15492_consen  145 ------------HYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRG  212 (282)
T ss_pred             ------------cCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccc
Confidence                        1234555666666555555543210           123332211110                    


Q ss_pred             ------eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccC
Q 036585          208 ------LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD  260 (304)
Q Consensus       208 ------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  260 (304)
                            ...+.........|..+..||||+.||+...+|.|.+|++.+.+..+.+..+.
T Consensus       213 ~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e  271 (282)
T PF15492_consen  213 LLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE  271 (282)
T ss_pred             eeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence                  00111111346678899999999999999999999999999888777765443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.31  E-value=6.1e-11  Score=90.99  Aligned_cols=160  Identities=16%  Similarity=0.233  Sum_probs=109.4

Q ss_pred             eeEEEEccCCCeEEEEecCCCCCceEEEEccCcee----eeecccccccEEEEEEcCCCCEEEEc---ccCCeEEEEeCC
Q 036585           60 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY----SRYFKGHHDRVVLLSLCSSKDCFISG---SLDRTVLLWDQR  132 (304)
Q Consensus        60 v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~  132 (304)
                      ...+..++.++.++++..   +....+++......    ..... -...-+++.|..+......+   +....+.+|...
T Consensus        65 ~~~~~~s~~~~llAv~~~---~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~  140 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATS---SKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD  140 (390)
T ss_pred             ccccccCCCceEEEEEeC---CCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence            445566778888888887   77776777655432    11111 12223344444444444433   333445555544


Q ss_pred             cceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585          133 AEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  212 (304)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  212 (304)
                      .+.....+                              +|.+.+..++++||+++++++..|..|++-....-..+..+-
T Consensus       141 ~~~~~~~l------------------------------GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc  190 (390)
T KOG3914|consen  141 SGRCEPIL------------------------------GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC  190 (390)
T ss_pred             ccCcchhh------------------------------hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence            33333222                              688899999999999999999999999998877666666665


Q ss_pred             eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585          213 VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       213 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      .  +|..-|..++.-++ ..|++++.|++|++||+.+++.+..+
T Consensus       191 l--GH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  191 L--GHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             c--ccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence            4  68889999998765 45899999999999999999876554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=9.5e-11  Score=91.37  Aligned_cols=243  Identities=12%  Similarity=0.111  Sum_probs=170.3

Q ss_pred             CcEEEEeeCCCeEEEEecCC---cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc--c
Q 036585           27 GIYLVTASDDESIRLYDVTA---ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG--H  101 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~--~  101 (304)
                      .+++.+++.||.++.|....   -+.+..+..|...+.+++.+.++..+.+.+..  |..++++|+++-..+..++.  .
T Consensus        20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~--Dhs~KvfDvEn~DminmiKL~~l   97 (558)
T KOG0882|consen   20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDP--DHSVKVFDVENFDMINMIKLVDL   97 (558)
T ss_pred             hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCc--ccceeEEEeeccchhhhcccccC
Confidence            67999999999999998543   13445566788899999999999988887653  89999999987655433331  1


Q ss_pred             cccEEEEEEcCCC-C-EEE-EcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585          102 HDRVVLLSLCSSK-D-CFI-SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV  178 (304)
Q Consensus       102 ~~~v~~~~~~~~~-~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  178 (304)
                      .+.+. ...+|.. . .++ +.-.++.+.++|-....+.....                           .+-|..+|..
T Consensus        98 Pg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f---------------------------kklH~sPV~~  149 (558)
T KOG0882|consen   98 PGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF---------------------------KKLHFSPVKK  149 (558)
T ss_pred             CCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee---------------------------cccccCceEE
Confidence            22222 1222221 1 233 33467889999976554332221                           1247789999


Q ss_pred             EEEecCCcEEEEeeCCCeEEEEEcCC------CceeEEEE------eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEe
Q 036585          179 VKFSNDGRLMLLTTMEGHIHVLDSFR------GTLLSTYN------VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS  246 (304)
Q Consensus       179 ~~~~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d  246 (304)
                      +.++|.+..+++....|.|.-|....      .+....++      ..+.......++.|+|++..+.+-+.|..|++++
T Consensus       150 i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~  229 (558)
T KOG0882|consen  150 IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV  229 (558)
T ss_pred             EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence            99999999999999999999998762      11111111      1113456778999999999999999999999999


Q ss_pred             cCCCceeeeee--------------------------------ccC-CCCceEEeCCCCcEEEEecCc-eEEeccCCccc
Q 036585          247 VRSGKEVASWM--------------------------------SFD-TEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSKL  292 (304)
Q Consensus       247 ~~~~~~~~~~~--------------------------------~~~-~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~~  292 (304)
                      +++++.++.+.                                .|. ..-+.+.|...+++|+-++-= +++.+++.+.+
T Consensus       230 ~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v  309 (558)
T KOG0882|consen  230 FKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTV  309 (558)
T ss_pred             eccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeE
Confidence            99987544331                                111 234567899999999988877 99999988877


Q ss_pred             cccccCC
Q 036585          293 GAYVGRN  299 (304)
Q Consensus       293 ~~~~~~~  299 (304)
                      .+..|+.
T Consensus       310 ~ri~gk~  316 (558)
T KOG0882|consen  310 VRILGKD  316 (558)
T ss_pred             EEEeccc
Confidence            6665543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.28  E-value=8.2e-09  Score=93.76  Aligned_cols=222  Identities=15%  Similarity=0.206  Sum_probs=134.1

Q ss_pred             eeEeecccCcEEEEee-CCCeEEEEecCCcceeeeeccc-----------------ccceeEEEEccCCCeEEEEecCCC
Q 036585           19 EILQSMEVGIYLVTAS-DDESIRLYDVTAATCLKTINSK-----------------KYGVDLVCFTSHPTTVIYSSKNGW   80 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~~~~   80 (304)
                      .-+.+.++++.|+++. .++.|+++|..++. +.++.+.                 -.....++++|++..++++...  
T Consensus       627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~--  703 (1057)
T PLN02919        627 QGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG--  703 (1057)
T ss_pred             cEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC--
Confidence            4466667777655544 45679999987654 3333210                 1134679999955555444332  


Q ss_pred             CCceEEEEccCceeeeecc---------c------ccccEEEEEEcCCCCE-EEEcccCCeEEEEeCCcceeeceEEEec
Q 036585           81 DESLRLLSLHDNKYSRYFK---------G------HHDRVVLLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQG  144 (304)
Q Consensus        81 d~~i~vwd~~~~~~~~~~~---------~------~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~  144 (304)
                      ++.|++||..++... .+.         +      .-.....++++|+++. +++-+.++.|++||+.++......  .+
T Consensus       704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~--gg  780 (1057)
T PLN02919        704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA--GG  780 (1057)
T ss_pred             CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE--ec
Confidence            889999998776432 111         1      1123567999999884 445566789999999876532111  00


Q ss_pred             cceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC----------
Q 036585          145 RPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----------  214 (304)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----------  214 (304)
                      ...  .......++..++...    .........++++++|..+++-..+++|++||..++.........          
T Consensus       781 ~~~--~~~~l~~fG~~dG~g~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~  854 (1057)
T PLN02919        781 DPT--FSDNLFKFGDHDGVGS----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL  854 (1057)
T ss_pred             ccc--cCcccccccCCCCchh----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence            000  0000000000000000    001123457899999998888888999999999877655333210          


Q ss_pred             CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585          215 PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       215 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  252 (304)
                      ...-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus       855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            01122567899999999888888999999999988764

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.28  E-value=2.9e-10  Score=85.71  Aligned_cols=239  Identities=14%  Similarity=0.185  Sum_probs=157.4

Q ss_pred             cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc-Cceeeeecc-cccccEEEEEEcCCCCEEEEcccCC
Q 036585           47 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDR  124 (304)
Q Consensus        47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg  124 (304)
                      ...++.+++|.+.++....-|....+++.+.   |.+++||--. .++.-..+. ....+++++.+.++...|+.|-..|
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~---drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng   90 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSE---DRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG   90 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccc---cceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc
Confidence            3456778899999999999999999999998   9999999544 344333332 2356889999999999999999999


Q ss_pred             eEEEEeCCccee----eceEEEeccc--eeEec-CCCeEEEecCCCeEEEEecCCCCCc---------eEEEEecCCcEE
Q 036585          125 TVLLWDQRAEKC----QGLLRVQGRP--AAAYD-DQGLVFGYEKGPLDIFSVGGDISDA---------NVVKFSNDGRLM  188 (304)
Q Consensus       125 ~i~iwd~~~~~~----~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~l  188 (304)
                      ++.-+.+...-.    .+....+...  ...++ +...++......-..|........+         +++.+.-.  +.
T Consensus        91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~  168 (404)
T KOG1409|consen   91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA  168 (404)
T ss_pred             eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence            998886543211    1111111111  11111 1222222222222222221111111         11111111  44


Q ss_pred             EEeeCCCeEEEEEcC--CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce-eeeeeccCCCCce
Q 036585          189 LLTTMEGHIHVLDSF--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE-VASWMSFDTEPPV  265 (304)
Q Consensus       189 ~~~~~dg~i~~~d~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~  265 (304)
                      .+|...|.|..-.+.  .-.++.++.   +|.+.+++++|.|....|++|..|..+.+||+--.+- ..++.+|...|..
T Consensus       169 fvGd~~gqvt~lr~~~~~~~~i~~~~---~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~  245 (404)
T KOG1409|consen  169 FVGDHSGQITMLKLEQNGCQLITTFN---GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA  245 (404)
T ss_pred             EecccccceEEEEEeecCCceEEEEc---CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhh
Confidence            556666666554443  334455555   7999999999999999999999999999999965443 4567889999999


Q ss_pred             EEeCCCCcEEEEecCc--eEEeccCCcccc
Q 036585          266 IKWAPGSLMFVTGSSE--LSFWIPDLSKLG  293 (304)
Q Consensus       266 ~~~~~~~~~l~s~~~d--~~iw~~~~~~~~  293 (304)
                      +...+--+.+.+++.|  +.+|+++.....
T Consensus       246 l~~~~~t~~l~S~~edg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  246 LSYAQHTRQLISCGEDGGIVVWNMNVKRVE  275 (404)
T ss_pred             hhhhhhheeeeeccCCCeEEEEeccceeec
Confidence            9988888999999999  999999876544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.28  E-value=1.8e-10  Score=85.87  Aligned_cols=228  Identities=13%  Similarity=0.192  Sum_probs=142.6

Q ss_pred             ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce-----eeeeccccc------------ccEEEEEEcCCC--CEE
Q 036585           57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-----YSRYFKGHH------------DRVVLLSLCSSK--DCF  117 (304)
Q Consensus        57 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l  117 (304)
                      ...|+++.|...|.++++|..   .|.|.+|.-+...     ....+++|.            ..|..+.|..++  ..+
T Consensus        26 ad~ItaVefd~tg~YlatGDk---gGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDK---GGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             cceeeEEEeccccceEeecCC---CceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            356899999999999999977   7899998765432     223344443            357778887543  367


Q ss_pred             EEcccCCeEEEEeCCcceeeceEEE--------e-ccce--------eEecCCCeEEEecCCCeEEEEecCCCCCceEEE
Q 036585          118 ISGSLDRTVLLWDQRAEKCQGLLRV--------Q-GRPA--------AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVK  180 (304)
Q Consensus       118 ~~~~~dg~i~iwd~~~~~~~~~~~~--------~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  180 (304)
                      +..+.|.+|++|.+........-..        + +.+.        ...+....++..  .+.+++ ...|..-++++.
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa--~p~rvy-aNaH~yhiNSiS  179 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA--KPCRVY-ANAHPYHINSIS  179 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEe--ccceec-cccceeEeeeee
Confidence            7778899999999875422111100        0 0000        001111111111  111111 135777889999


Q ss_pred             EecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCC-----CcceEEEEcCCC-cEEEEecCCCcEEEEecCCCce--
Q 036585          181 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR-----NSTLEASFSPEG-MFVISGSGDGSVHAWSVRSGKE--  252 (304)
Q Consensus       181 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~--  252 (304)
                      |+.|.+.++++ .|=+|.+|++.-......+..-..+.     .-|++..|+|.. +.+.-.+..|.|++-|++...+  
T Consensus       180 ~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd  258 (460)
T COG5170         180 FNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD  258 (460)
T ss_pred             ecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence            99988876655 56789999986543333222111222     357889999953 4555666789999999984221  


Q ss_pred             ----eee----------eeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585          253 ----VAS----------WMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSK  291 (304)
Q Consensus       253 ----~~~----------~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~  291 (304)
                          +..          +.+-...|..+.|+++|+++++-+.- ++||+.+..+
T Consensus       259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k  312 (460)
T COG5170         259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK  312 (460)
T ss_pred             CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc
Confidence                111          12334678899999999999988877 9999998754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=2.9e-10  Score=93.89  Aligned_cols=220  Identities=13%  Similarity=0.177  Sum_probs=153.0

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCceEEEEccCce---------------eeeecccccccEEEEEEcCCCCEEEEccc
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---------------YSRYFKGHHDRVVLLSLCSSKDCFISGSL  122 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  122 (304)
                      ....|++|+....++++|+.   ||.+++..+.+..               .-+++.+|.+.|.-+.|+.+.+.|-+...
T Consensus        15 vkL~c~~WNke~gyIAcgG~---dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGA---DGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccc---cceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            46889999999999999999   9999999886532               13567899999999999999999999999


Q ss_pred             CCeEEEEeCCcceeeceEEEe----ccceeEecCCC--eEEEecCCCeEEEEecCC--------CCCceEEEEecCCcEE
Q 036585          123 DRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQG--LVFGYEKGPLDIFSVGGD--------ISDANVVKFSNDGRLM  188 (304)
Q Consensus       123 dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l  188 (304)
                      +|.|.+|-+-.++....+...    -...++|..+|  ..+.+++|.+.+-.+.+.        ......+.|++|.+.+
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA  171 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence            999999988766543332111    11234555554  344666666665555442        3445678999999999


Q ss_pred             EEeeCCCeEEEEEcCCC-----ceeEEEE---eCCCCCCcceEEEEc--------CCCcEEEEecCCCcEEEEecCCCce
Q 036585          189 LLTTMEGHIHVLDSFRG-----TLLSTYN---VKPVSRNSTLEASFS--------PEGMFVISGSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       189 ~~~~~dg~i~~~d~~~~-----~~~~~~~---~~~~~~~~i~~~~~s--------~~~~~l~~~~~dg~i~v~d~~~~~~  252 (304)
                      +.+-.+|.+.+||.+..     +......   ........+..+.|.        ||...|+.+-.+|.+.+..-.+...
T Consensus       172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~  251 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE  251 (1189)
T ss_pred             HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence            99999999999996432     1111111   000112224444443        5778999999999988876544333


Q ss_pred             eeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585          253 VASWMSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       253 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      ...+. ....+....|+++|..|+.++.+
T Consensus       252 Pvv~d-tgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  252 PVVVD-TGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             CeEEe-cccEeecceecCCCcEEEEccCc
Confidence            22232 33678899999999999999865

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.27  E-value=2.4e-10  Score=87.80  Aligned_cols=164  Identities=16%  Similarity=0.223  Sum_probs=117.2

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcc----eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   93 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~   93 (304)
                      ...+..++.++++|.+..+....++++....    ++....... ...++.|..+......+-..|....+.+|....+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            3445667789999999888887777766433    222222222 34556666666666666553336667777766544


Q ss_pred             eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585           94 YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI  173 (304)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                      + ..+-+|-..++.++|+||+++++++..|..|++-.......+..+..                            +|.
T Consensus       144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl----------------------------GH~  194 (390)
T KOG3914|consen  144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL----------------------------GHK  194 (390)
T ss_pred             c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc----------------------------ccH
Confidence            3 44557999999999999999999999999999976654444333321                            577


Q ss_pred             CCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585          174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  212 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  212 (304)
                      .-|..++.-++. .|++++.|+++++||+++|+.+.++.
T Consensus       195 eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  195 EFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             hheeeeeeccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence            888888887654 58999999999999999999887765

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.25  E-value=2.7e-09  Score=78.01  Aligned_cols=193  Identities=15%  Similarity=0.107  Sum_probs=131.5

Q ss_pred             EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce-e-ee-ecccccccE
Q 036585           29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-Y-SR-YFKGHHDRV  105 (304)
Q Consensus        29 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~-~-~~-~~~~~~~~v  105 (304)
                      .+..++.|.++++.+++.+.....+....-.+.+++++++++++++.+.   ...|..|.+.... . +. .....++.-
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgd---s~~Vf~y~id~~sey~~~~~~a~t~D~g  206 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGD---SRRVFRYAIDDESEYIENIYEAPTSDHG  206 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecC---CCcceEEEeCCccceeeeeEecccCCCc
Confidence            3566778888888887654333322222234889999999999999998   8899999886532 2 22 223344455


Q ss_pred             EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC
Q 036585          106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG  185 (304)
Q Consensus       106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  185 (304)
                      .+..|+.....+|++..||++.|||++.............                        ..|.+.++.+.|++-|
T Consensus       207 F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstr------------------------p~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  207 FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTR------------------------PHHNGAFRVCRFSLYG  262 (344)
T ss_pred             eeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccC------------------------CCCCCceEEEEecCCC
Confidence            7889999999999999999999999997665444332222                        1477899999999866


Q ss_pred             c--EEEEeeCCCeEEEEEcCCCceeEEEEeCCC----CC-CcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585          186 R--LMLLTTMEGHIHVLDSFRGTLLSTYNVKPV----SR-NSTLEASFSPEGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       186 ~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~-~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~  249 (304)
                      .  +|+..-.-+.+.+.|+++++....+...+.    |. ..+....|+.++.-+.+.+++ .+.=|++.+
T Consensus       263 ~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  263 LLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             cceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence            3  456666667899999999887666653221    11 236667777776666666544 244555543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=6.4e-11  Score=89.30  Aligned_cols=160  Identities=16%  Similarity=0.210  Sum_probs=117.3

Q ss_pred             CCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585           81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE  160 (304)
Q Consensus        81 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (304)
                      +..+-+-|++++-. +.|. ..+.|.++.|...+++++.|..+|.|..+|++....-.....+                 
T Consensus       233 sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~-----------------  293 (425)
T KOG2695|consen  233 SQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ-----------------  293 (425)
T ss_pred             cceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE-----------------
Confidence            78899999988753 3344 5678999999998999999999999999999876211100000                 


Q ss_pred             CCCeEEEEecCCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCce---eEEEEeCCCCCCc--ceEEEEcCCCcEEE
Q 036585          161 KGPLDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTL---LSTYNVKPVSRNS--TLEASFSPEGMFVI  234 (304)
Q Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~--i~~~~~s~~~~~l~  234 (304)
                          .+    -|.+.|+++..-. ++++|++.+.+|+|.+||++.-+.   +..+.   +|-+.  -.-+...+....++
T Consensus       294 ----rl----yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe---GHvN~~a~l~~~v~~eeg~I~  362 (425)
T KOG2695|consen  294 ----RL----YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE---GHVNLSAYLPAHVKEEEGSIF  362 (425)
T ss_pred             ----EE----EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee---cccccccccccccccccceEE
Confidence                00    2667888888766 788999999999999999987666   66666   33322  22244566777899


Q ss_pred             EecCCCcEEEEecCCCceeeeeeccC----CCCceEEeCC
Q 036585          235 SGSGDGSVHAWSVRSGKEVASWMSFD----TEPPVIKWAP  270 (304)
Q Consensus       235 ~~~~dg~i~v~d~~~~~~~~~~~~~~----~~i~~~~~~~  270 (304)
                      +++.|...|||.++++.++.+++...    ..+.+++|..
T Consensus       363 s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  363 SVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             EccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence            99999999999999999988875432    2345566543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=7.9e-09  Score=83.03  Aligned_cols=241  Identities=12%  Similarity=0.185  Sum_probs=158.9

Q ss_pred             EEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEE
Q 036585           39 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFI  118 (304)
Q Consensus        39 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  118 (304)
                      ...|+.........-....-.-+-+.|||.|.+|++-.    ..-|.+|--++-..++.+. |. .|.-+.|||+.+||+
T Consensus       192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~H----k~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLV  265 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFH----KQGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLV  265 (698)
T ss_pred             EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEe----ccceeeecCccHHHHHhcc-CC-CceeeecCCccceEE
Confidence            44576544322221111222345789999999999998    5678899877666666665 65 488899999999999


Q ss_pred             Eccc-----------CCeEEEEeCCcceeeceEEEecc-----ceeEecCCCeEEEe-cCCCeEEEEec--------C-C
Q 036585          119 SGSL-----------DRTVLLWDQRAEKCQGLLRVQGR-----PAAAYDDQGLVFGY-EKGPLDIFSVG--------G-D  172 (304)
Q Consensus       119 ~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~--------~-~  172 (304)
                      +-+.           ...++|||+++|...+.+.....     +.+.|+.+..++.. ....+.++...        . .
T Consensus       266 T~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslk  345 (698)
T KOG2314|consen  266 TYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLK  345 (698)
T ss_pred             EecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccC
Confidence            8542           25799999999999888876322     35667777655532 22344444322        1 3


Q ss_pred             CCCceEEEEecCCcEEEEeeC-----CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec----------
Q 036585          173 ISDANVVKFSNDGRLMLLTTM-----EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS----------  237 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----------  237 (304)
                      ...|....|+|.++.||-=..     -.++.+..+.+++.+++...   +.-.-..+.|-.+|.+|+.--          
T Consensus       346 i~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl---fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g  422 (698)
T KOG2314|consen  346 ISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL---FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKG  422 (698)
T ss_pred             CccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccc---eeeeccEEEeccCCcEEEEEEEeeccccccc
Confidence            467888999999988875322     23577778777777776653   333333477888898887532          


Q ss_pred             CCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-----eEEeccC
Q 036585          238 GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-----LSFWIPD  288 (304)
Q Consensus       238 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~iw~~~  288 (304)
                      .-..+-|+.++.....-........|...+|-|.|..+++-+.+     +++|.++
T Consensus       423 ~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e  478 (698)
T KOG2314|consen  423 QFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVE  478 (698)
T ss_pred             eEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEee
Confidence            11235566665544322223456778899999999888776655     8888776

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.22  E-value=2.8e-08  Score=75.88  Aligned_cols=222  Identities=18%  Similarity=0.137  Sum_probs=135.0

Q ss_pred             CCeEEEEecCCcceeeeecccccceeEEE--EccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCC
Q 036585           36 DESIRLYDVTAATCLKTINSKKYGVDLVC--FTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSS  113 (304)
Q Consensus        36 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  113 (304)
                      +|.|..||..+++.+-...... ......  ..+++..+++++.   ++.|..||..+|+.+..+.. ..++.... ...
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASG---DGNLYALDAKTGKVLWRFDL-PGPISGAP-VVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEET---TSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEE
T ss_pred             CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcC---CCEEEEEECCCCCEEEEeec-ccccccee-eec
Confidence            6889999999999887775411 122222  3336777777766   99999999999988766653 22211111 123


Q ss_pred             CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC
Q 036585          114 KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM  193 (304)
Q Consensus       114 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  193 (304)
                      +..++.++.++.++.+|.++++..........+.                        . ..........++..++++..
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~------------------------~-~~~~~~~~~~~~~~~~~~~~  130 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP------------------------A-GVRSSSSPAVDGDRLYVGTS  130 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT------------------------C-STB--SEEEEETTEEEEEET
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccc------------------------c-ccccccCceEecCEEEEEec
Confidence            4566777788899999999999877642211000                        0 01112233334778888888


Q ss_pred             CCeEEEEEcCCCceeEEEEeCCCCC-Cc------ceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceE
Q 036585          194 EGHIHVLDSFRGTLLSTYNVKPVSR-NS------TLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVI  266 (304)
Q Consensus       194 dg~i~~~d~~~~~~~~~~~~~~~~~-~~------i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  266 (304)
                      ++.|..+|.++|+.+.......... ..      +..-....++ .++.++.++.+.-+|+.+++.+....  ...+..+
T Consensus       131 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~  207 (238)
T PF13360_consen  131 SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL  207 (238)
T ss_dssp             CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC
T ss_pred             cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC
Confidence            9999999999999998888522111 11      1122222244 67777777754444999998654332  2223332


Q ss_pred             EeCCCCcEEEEecCc--eEEeccCCccc
Q 036585          267 KWAPGSLMFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       267 ~~~~~~~~l~s~~~d--~~iw~~~~~~~  292 (304)
                       ..+++..|+.++.+  +..|+....+.
T Consensus       208 -~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  208 -PSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             -EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             -ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence             34566666666645  77777765543

...

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.22  E-value=4.5e-10  Score=94.97  Aligned_cols=183  Identities=15%  Similarity=0.227  Sum_probs=139.5

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV  105 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v  105 (304)
                      ++..++.|+....+..+|+.+.+..+...-....|.-|..  +++.+++|..   .|+|.+-|.++.+.++++..|++.|
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t---~G~V~LrD~~s~~~iht~~aHs~si  220 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDT---RGTVFLRDPNSFETIHTFDAHSGSI  220 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecc---cceEEeecCCcCceeeeeeccccce
Confidence            3566777777778889999988887777665556666655  7788888888   9999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEccc---------CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585          106 VLLSLCSSKDCFISGSL---------DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA  176 (304)
Q Consensus       106 ~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  176 (304)
                      ..+..  .|+.|++++.         |.-|++||+|..+.+..+..+..+                              
T Consensus       221 SDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P------------------------------  268 (1118)
T KOG1275|consen  221 SDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP------------------------------  268 (1118)
T ss_pred             eeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc------------------------------
Confidence            87766  5888999875         566899999988776655433221                              


Q ss_pred             eEEEEecC-CcEEEEeeCCCeEEEEEcCC-Cce-eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEe
Q 036585          177 NVVKFSND-GRLMLLTTMEGHIHVLDSFR-GTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS  246 (304)
Q Consensus       177 ~~~~~~~~-~~~l~~~~~dg~i~~~d~~~-~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d  246 (304)
                      .-+.|.|. -..+++++..|...+-|..+ +.+ ...+... .....+..+++|++++.++.|..+|.|.+|.
T Consensus       269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             hhhhhcccccceEEEEecccceeeccccccCCCccceeEEc-cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            23567774 34688889999999999432 122 2222222 2455699999999999999999999999997

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.22  E-value=1.4e-09  Score=81.31  Aligned_cols=236  Identities=16%  Similarity=0.299  Sum_probs=151.9

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcc-----eeeeecccc------------cceeEEEEccCCC--eEEEEecCCC
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAAT-----CLKTINSKK------------YGVDLVCFTSHPT--TVIYSSKNGW   80 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~~~~~~~   80 (304)
                      ++.+-..|.||++|...|.|.++.-+...     ....+++|.            ..|..+.|..++.  .++..+.   
T Consensus        31 aVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN---  107 (460)
T COG5170          31 AVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN---  107 (460)
T ss_pred             EEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC---
Confidence            45666779999999999999999865332     233455554            3477888876543  4555555   


Q ss_pred             CCceEEEEccCcee-------------------e-----------------------eec-ccccccEEEEEEcCCCCEE
Q 036585           81 DESLRLLSLHDNKY-------------------S-----------------------RYF-KGHHDRVVLLSLCSSKDCF  117 (304)
Q Consensus        81 d~~i~vwd~~~~~~-------------------~-----------------------~~~-~~~~~~v~~~~~~~~~~~l  117 (304)
                      |.+|++|.+.....                   +                       +.+ ..|..-+.++.|..|...+
T Consensus       108 dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~  187 (460)
T COG5170         108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETL  187 (460)
T ss_pred             CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhee
Confidence            99999998754310                   0                       001 2466667788888887777


Q ss_pred             EEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC-----CCceEEEEecCC-cEEEEe
Q 036585          118 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI-----SDANVVKFSNDG-RLMLLT  191 (304)
Q Consensus       118 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~-~~l~~~  191 (304)
                      +++. |-.|.+|+++-..                          +...+.++..|.     .-|++..|+|.. ..+.-+
T Consensus       188 lSaD-dLrINLWnl~i~D--------------------------~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS  240 (460)
T COG5170         188 LSAD-DLRINLWNLEIID--------------------------GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS  240 (460)
T ss_pred             eecc-ceeeeeccccccC--------------------------CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence            7654 5678888876432                          122233333332     357788899854 456667


Q ss_pred             eCCCeEEEEEcCCCce------eEEEEeC-------CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-ceeeeee
Q 036585          192 TMEGHIHVLDSFRGTL------LSTYNVK-------PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-KEVASWM  257 (304)
Q Consensus       192 ~~dg~i~~~d~~~~~~------~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~  257 (304)
                      +..|.|++-|++....      +......       ......|..+.|+++|+++++-+. -+|++||.+.. .++.+++
T Consensus       241 sSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~  319 (460)
T COG5170         241 SSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP  319 (460)
T ss_pred             cCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence            7889999999984321      1111110       012346778999999999998764 47999999754 4566664


Q ss_pred             ccC------------CCC---ceEEeCCCCcEEEEecCc--eEEec
Q 036585          258 SFD------------TEP---PVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       258 ~~~------------~~i---~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      -|.            ..|   ..+.|+.|.+.+.+|+..  .-||-
T Consensus       320 ~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         320 MHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             hHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence            442            122   347788888888888766  44443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=1.1e-08  Score=85.41  Aligned_cols=236  Identities=11%  Similarity=0.101  Sum_probs=158.3

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCC----------C--eEEEEecCCCCCceE
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP----------T--TVIYSSKNGWDESLR   85 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~--~l~~~~~~~~d~~i~   85 (304)
                      .+++.+++.| +||.|+.. .|.|-|..+.+.++.+..|...|+.+.|.|-.          .  .++++..   .|.|.
T Consensus        18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~---~GrIi   92 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI---SGRII   92 (1062)
T ss_pred             ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc---cCcEE
Confidence            3445566655 77777754 68999999999999999999999999998732          1  2334433   89999


Q ss_pred             EEEccCceeeeecccccccEEEEEEcC---CC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecC
Q 036585           86 LLSLHDNKYSRYFKGHHDRVVLLSLCS---SK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEK  161 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (304)
                      +||...+..+..+..|.+++..++|-+   +. ..|++-....++.+|+..+|+.......                   
T Consensus        93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-------------------  153 (1062)
T KOG1912|consen   93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-------------------  153 (1062)
T ss_pred             EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc-------------------
Confidence            999999988889999999999999986   33 3566666678999999999887655432                   


Q ss_pred             CCeEEEEecCCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCC----CceeEEEEeCCCCCC-----------------
Q 036585          162 GPLDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFR----GTLLSTYNVKPVSRN-----------------  219 (304)
Q Consensus       162 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~----~~~~~~~~~~~~~~~-----------------  219 (304)
                                ......++.+.| |.+.+..-+..|.+.+-+.-.    ..+.+.++....|..                 
T Consensus       154 ----------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~  223 (1062)
T KOG1912|consen  154 ----------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTST  223 (1062)
T ss_pred             ----------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCC
Confidence                      223344455555 344444444555554444311    011111111111100                 


Q ss_pred             --------cceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCC--cEEEEecCc--eEEecc
Q 036585          220 --------STLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS--LMFVTGSSE--LSFWIP  287 (304)
Q Consensus       220 --------~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~~d--~~iw~~  287 (304)
                              ....++|+|.-+.++.......+.++|++-..++....-..+.+.-+.|-|+.  ..|++...|  +.||.-
T Consensus       224 ~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  224 PASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             CcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence                    11236788866555555567789999999888888876666767777888865  467777777  777754

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.17  E-value=6.3e-08  Score=79.60  Aligned_cols=248  Identities=11%  Similarity=0.014  Sum_probs=142.8

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEE
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV  106 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  106 (304)
                      +..++.++.+|.+..+|.++|+.+-+.............  .+..++++..   ++.+.-+|..+|+.+..+......+.
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~~~~~~  194 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTS---NGMLQALNESDGAVKWTVNLDVPSLT  194 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECC---CCEEEEEEccCCCEeeeecCCCCccc
Confidence            566777888999999999999988766543321111112  2446666666   89999999999988766653211100


Q ss_pred             E-EEEcC--CCCEEEEcccCCeEEEEeCCcceeeceEEEecc-------------ceeEecCCCeEEEecCCCeEEEEec
Q 036585          107 L-LSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------------PAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus       107 ~-~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      . ..-+|  .+..++.++.+|.+..+|..+++..........             .......+..++...++.+..++..
T Consensus       195 ~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~  274 (394)
T PRK11138        195 LRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR  274 (394)
T ss_pred             ccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence            0 00111  123566677889999999988887665432111             0011112222223333333333322


Q ss_pred             CC-------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEE
Q 036585          171 GD-------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVH  243 (304)
Q Consensus       171 ~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  243 (304)
                      ..       ......+.  ..+..+++++.+|.+..+|..+++.+......  ......+...  .+.+|+.++.+|.|+
T Consensus       275 tG~~~W~~~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~sp~v--~~g~l~v~~~~G~l~  348 (394)
T PRK11138        275 SGQIVWKREYGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LHRLLTAPVL--YNGYLVVGDSEGYLH  348 (394)
T ss_pred             CCCEEEeecCCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc--CCCcccCCEE--ECCEEEEEeCCCEEE
Confidence            11       01111111  24567888889999999999999876554311  1111122222  245788889999999


Q ss_pred             EEecCCCceeeeeeccCCCCce-EEeCCCCcEEEEecCceEEecc
Q 036585          244 AWSVRSGKEVASWMSFDTEPPV-IKWAPGSLMFVTGSSELSFWIP  287 (304)
Q Consensus       244 v~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~d~~iw~~  287 (304)
                      +.|..+++.+.+.......+.+ ..+  .+..|+.++.+..++.+
T Consensus       349 ~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~  391 (394)
T PRK11138        349 WINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAI  391 (394)
T ss_pred             EEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEE
Confidence            9999999988776543333322 122  23466667777555544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.16  E-value=2.2e-07  Score=71.00  Aligned_cols=252  Identities=10%  Similarity=0.076  Sum_probs=153.0

Q ss_pred             eEeecc-cCcEEEEeeCCCe-EEEEecCCcceeeeecccccc--eeEEEEccCCCeEEEEecC--CCCCceEEEEcc-Cc
Q 036585           20 ILQSME-VGIYLVTASDDES-IRLYDVTAATCLKTINSKKYG--VDLVCFTSHPTTVIYSSKN--GWDESLRLLSLH-DN   92 (304)
Q Consensus        20 ~i~~~~-~~~~l~~~~~d~~-i~vw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~--~~d~~i~vwd~~-~~   92 (304)
                      .+...| .+..++.+-.-|+ ..+||..+++..+.+....+.  --.-.|++||++|++.-.+  ...|.|-|||.. +-
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            355566 4667777777665 778999999888776543221  1246899999999987431  127899999998 56


Q ss_pred             eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCC-eEEEEe--
Q 036585           93 KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGP-LDIFSV--  169 (304)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--  169 (304)
                      +.+..+..|.-.-..+.+.||++.|+.+-.  -|.- ..++++....+....       |+-.++...++. +.-+.+  
T Consensus        89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANG--GI~T-hpd~GR~kLNl~tM~-------psL~~ld~~sG~ll~q~~Lp~  158 (305)
T PF07433_consen   89 RRIGEFPSHGIGPHELLLMPDGETLVVANG--GIET-HPDSGRAKLNLDTMQ-------PSLVYLDARSGALLEQVELPP  158 (305)
T ss_pred             EEEeEecCCCcChhhEEEcCCCCEEEEEcC--CCcc-CcccCceecChhhcC-------CceEEEecCCCceeeeeecCc
Confidence            777778777666677889999987777532  1211 111111111111111       111112122222 334444  


Q ss_pred             cCCCCCceEEEEecCCcEEEEeeCCCe-------EEEEEcCCCceeEEEEeC----CCCCCcceEEEEcCCCcEEEEec-
Q 036585          170 GGDISDANVVKFSNDGRLMLLTTMEGH-------IHVLDSFRGTLLSTYNVK----PVSRNSTLEASFSPEGMFVISGS-  237 (304)
Q Consensus       170 ~~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~~~d~~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~-  237 (304)
                      ..|+-.+..+++.++|..++..-..|.       +-+++  .++....+...    ....+.+-++++++++.++++.+ 
T Consensus       159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP  236 (305)
T PF07433_consen  159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP  236 (305)
T ss_pred             cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence            346678899999999886555443332       33333  33333333311    12457888999999998886665 


Q ss_pred             CCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCceEEecc
Q 036585          238 GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIP  287 (304)
Q Consensus       238 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~  287 (304)
                      ..+.+.+||..+++.+....-  ..+..++-.+++ ++++.+.. .++..
T Consensus       237 rGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G-~~~~~  282 (305)
T PF07433_consen  237 RGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQG-QLIRL  282 (305)
T ss_pred             CCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCc-cEEEc
Confidence            567899999999998876543  345677777776 55555544 34433

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.16  E-value=5.1e-10  Score=92.67  Aligned_cols=236  Identities=14%  Similarity=0.206  Sum_probs=156.3

Q ss_pred             Eeeccc--Cc-EEEEeeCCCeEEEEecCC---cceeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEccCce
Q 036585           21 LQSMEV--GI-YLVTASDDESIRLYDVTA---ATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNK   93 (304)
Q Consensus        21 i~~~~~--~~-~l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~~   93 (304)
                      +++++.  -. .+++.+ ...-.+|++..   ...-..+.+|...++.+.|.|+.. .+++++.   |..+..||+++..
T Consensus        73 ~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsv---dt~vh~wd~rSp~  148 (1081)
T KOG0309|consen   73 VQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSV---DTYVHAWDMRSPH  148 (1081)
T ss_pred             eecccCCCCceeEEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccc---cccceeeeccCCC
Confidence            455554  23 344444 44566898763   334455778999999999999765 5666666   9999999998764


Q ss_pred             -eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585           94 -YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD  172 (304)
Q Consensus        94 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (304)
                       ++..+..-......++|+-....+++.+....|++||++.+.....                            .+++|
T Consensus       149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~----------------------------s~K~~  200 (1081)
T KOG0309|consen  149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC----------------------------SLKGH  200 (1081)
T ss_pred             cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceE----------------------------Eeccc
Confidence             4444444445567789987555566667778899999997754321                            22345


Q ss_pred             CCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc--EEEEecCCCcEEEEecC-
Q 036585          173 ISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM--FVISGSGDGSVHAWSVR-  248 (304)
Q Consensus       173 ~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~v~d~~-  248 (304)
                      ...++.++|+.- ...+.+++.||+|++||............  ....++..-++-|-|.  ++.---.+..+.+++-+ 
T Consensus       201 vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v--tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n  278 (1081)
T KOG0309|consen  201 VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV--TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN  278 (1081)
T ss_pred             ceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec--cccCcceeccccccCceeEeccccCCeeeeeccccc
Confidence            667777777552 34578899999999999865543333322  2566777778888443  33322223344444333 


Q ss_pred             --------C-CceeeeeeccCCCCceEEeCCCC----------cEEEEecCc--eEEeccCCc
Q 036585          249 --------S-GKEVASWMSFDTEPPVIKWAPGS----------LMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       249 --------~-~~~~~~~~~~~~~i~~~~~~~~~----------~~l~s~~~d--~~iw~~~~~  290 (304)
                              + .+++..+.+|...|....|-..+          -.|+|-+.|  +++|-++.+
T Consensus       279 ~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  279 SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence                    2 35688899999988777775432          379999999  999977644

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.2e-08  Score=78.83  Aligned_cols=244  Identities=10%  Similarity=0.076  Sum_probs=147.2

Q ss_pred             EEEEecCCcceeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCC-CCE
Q 036585           39 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSS-KDC  116 (304)
Q Consensus        39 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~  116 (304)
                      +++.+..+.+..+-+.++...|..++|+|... .+..++.   +..|+|.|+++...+..+..+ ..+++++|.-+ .++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl---~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~  250 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASL---GNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHV  250 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeecc---CceEEEEecccceeeeheecc-CCceeeeeccCCcce
Confidence            55555555555566677888999999999888 4566666   999999999999988888877 78999999865 457


Q ss_pred             EEEcccCCeEEEEeCCcceeeceEE---Eecccee--------EecCCCeEEEecCCCeEEEEecC------------CC
Q 036585          117 FISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAA--------AYDDQGLVFGYEKGPLDIFSVGG------------DI  173 (304)
Q Consensus       117 l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~------------~~  173 (304)
                      +++|..+|.|.+||++..+......   ....+..        ...+.+-++......+..|.+..            ..
T Consensus       251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~p  330 (463)
T KOG1645|consen  251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPP  330 (463)
T ss_pred             eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCC
Confidence            8888899999999998765322110   0111111        11122222333333333333322            13


Q ss_pred             CCceEEEEecCCcEEEEeeCCC-------e-EEEEEcCCCceeEEEEeCCCC-CCc------ceEEEEcCCCcEEE-Eec
Q 036585          174 SDANVVKFSNDGRLMLLTTMEG-------H-IHVLDSFRGTLLSTYNVKPVS-RNS------TLEASFSPEGMFVI-SGS  237 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~dg-------~-i~~~d~~~~~~~~~~~~~~~~-~~~------i~~~~~s~~~~~l~-~~~  237 (304)
                      +...++++.+..+.++......       . +.--|..+|.++..-+.  .+ ...      -..+.-.++.++++ .++
T Consensus       331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~--~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd  408 (463)
T KOG1645|consen  331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRR--TYFGSKQTKLSTTQAIRAVEDNNYIVVVGD  408 (463)
T ss_pred             cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecc--cccCCcccccccccceeccccccEEEEecC
Confidence            3444555555444444433221       0 11122334443332221  01 000      01112234555554 455


Q ss_pred             CCCcEEEEecCCCceeeeeeccCCCCceEEeCC--CCcEEEEecCc-eEEeccCC
Q 036585          238 GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAP--GSLMFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       238 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~d-~~iw~~~~  289 (304)
                      ..+.+.+||..+++.++++. -..+|..++...  .+.+|+.-.+| ++||.++.
T Consensus       409 ~tn~lil~D~~s~evvQ~l~-~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es  462 (463)
T KOG1645|consen  409 STNELILQDPHSFEVVQTLA-LSEPVLDICPNDTNGSSYLALLTDDRVHIYKNES  462 (463)
T ss_pred             CcceeEEeccchhheeeecc-cCcceeecceeecCCcchhhheecceEEEEecCC
Confidence            66789999999999998886 347788777544  35688888888 99998764

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.11  E-value=5.2e-11  Score=100.41  Aligned_cols=214  Identities=17%  Similarity=0.162  Sum_probs=154.8

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC-ceeeeec
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYSRYF   98 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~-~~~~~~~   98 (304)
                      .++++.+.+.|+.|+..|.|+++++.+|.....+..|..+|+.+.-+.+|..+++.+..+ .-...+|++.+ +.+.+++
T Consensus      1106 c~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S-~PlsaLW~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1106 CIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS-SPLSALWDASSTGGPRHSF 1184 (1516)
T ss_pred             eEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc-CchHHHhccccccCccccc
Confidence            466777889999999999999999999999999999999999999999999988877521 33678999864 4455555


Q ss_pred             ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585           99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV  178 (304)
Q Consensus        99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  178 (304)
                      .    .-.++.|+.....-+.|.......+||+++......+-....                         +....-++
T Consensus      1185 ~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~-------------------------~~~y~~n~ 1235 (1516)
T KOG1832|consen 1185 D----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV-------------------------TSSYSNNL 1235 (1516)
T ss_pred             c----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch-------------------------hhhhhccc
Confidence            4    335788887655445555556789999999877665322111                         11122366


Q ss_pred             EEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec
Q 036585          179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS  258 (304)
Q Consensus       179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  258 (304)
                      ..|+|+..+++   .||  .+||.+..+.++.|...   ... ..-.|+|.|.-++.-+     -|||+++.+.+...+.
T Consensus      1236 a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~f---t~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1236 AHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQF---TDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS 1301 (1516)
T ss_pred             cccCCCcceEe---eCc--eeeeeccHHHHhhhhhh---eec-ccccccCCCceEEeec-----hhhhhHHHHHHhcCcc
Confidence            88999998775   455  48999988877777632   111 2246999999888765     4899999988776643


Q ss_pred             cCCCCceEEeCCCCcEEEEec
Q 036585          259 FDTEPPVIKWAPGSLMFVTGS  279 (304)
Q Consensus       259 ~~~~i~~~~~~~~~~~l~s~~  279 (304)
                      -.  -..+.|+..|..++..-
T Consensus      1302 Ld--qc~VtFNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1302 LD--QCAVTFNSTGDVMYAML 1320 (1516)
T ss_pred             cc--ceEEEeccCccchhhhh
Confidence            32  25677888887665543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=5.1e-10  Score=84.57  Aligned_cols=162  Identities=15%  Similarity=0.190  Sum_probs=118.5

Q ss_pred             EEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc-----eeeeecccccccE
Q 036585           31 VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-----KYSRYFKGHHDRV  105 (304)
Q Consensus        31 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~v  105 (304)
                      ++.+.+-.+-+-|++++... .+. ....|.++.|...++.++.|+.   +|.|..+|++.+     .+.+.+- |...|
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcR---ngeI~~iDLR~rnqG~~~~a~rly-h~Ssv  301 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCR---NGEIFVIDLRCRNQGNGWCAQRLY-HDSSV  301 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEeccc---CCcEEEEEeeecccCCCcceEEEE-cCcch
Confidence            44555666888888876432 333 5568999999999999999999   999999999864     3444444 88999


Q ss_pred             EEEEEcC-CCCEEEEcccCCeEEEEeCCccee---eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC--CceEE
Q 036585          106 VLLSLCS-SKDCFISGSLDRTVLLWDQRAEKC---QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS--DANVV  179 (304)
Q Consensus       106 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~  179 (304)
                      +++.... ++++|++.+.+|+|++||++.-++   +..+.                             +|..  .-.-+
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-----------------------------GHvN~~a~l~~  352 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-----------------------------GHVNLSAYLPA  352 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-----------------------------ccccccccccc
Confidence            9998877 788999999999999999997766   33332                             2221  22224


Q ss_pred             EEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC-CCCcceEEEEc
Q 036585          180 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-SRNSTLEASFS  227 (304)
Q Consensus       180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~i~~~~~s  227 (304)
                      -+.+....+++++.|...++|.++.+..+.++..+.. ....+.+++|+
T Consensus       353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            4566677888899999999999999999988874322 22245555554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.09  E-value=8.1e-08  Score=71.29  Aligned_cols=187  Identities=12%  Similarity=0.123  Sum_probs=114.1

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeeccc-------ccceeEEEEccCC------CeEEEEecCCCCCceEE
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSK-------KYGVDLVCFTSHP------TTVIYSSKNGWDESLRL   86 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~------~~l~~~~~~~~d~~i~v   86 (304)
                      -+.|+||+.+||.+...|+|+++|+.. ..+..+...       ...|..|.|.+..      ..|++...   +|.++=
T Consensus        48 kl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y---~G~L~S  123 (282)
T PF15492_consen   48 KLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY---RGQLRS  123 (282)
T ss_pred             EEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEec---cceeee
Confidence            478999999999999999999999875 333333321       2456667775432      14555555   777777


Q ss_pred             EEccCc-----eeeeecc---cccccEEEEEEcCCCCEEEEcccCC-----------eEEEEeCCcceeeceEEEeccce
Q 036585           87 LSLHDN-----KYSRYFK---GHHDRVVLLSLCSSKDCFISGSLDR-----------TVLLWDQRAEKCQGLLRVQGRPA  147 (304)
Q Consensus        87 wd~~~~-----~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~  147 (304)
                      |-+..+     +...++.   .+...|.++.|+|..++|+.|+...           -+..|.+-++.+-..........
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~  203 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD  203 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence            765322     2223332   2466899999999988888776422           24445444333222111100000


Q ss_pred             eEecC-CCeEEEecCCCeEEEEe-cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585          148 AAYDD-QGLVFGYEKGPLDIFSV-GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  212 (304)
Q Consensus       148 ~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  212 (304)
                      +...+ ...+.  .-..++++.. ......|..|..||||+.|++...+|.|.+|++.+-+....+.
T Consensus       204 ~~~~~~~~~~~--~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  204 ITASSKRRGLL--RIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             cccccccccee--eccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            00000 00000  1112333332 2356788999999999999999999999999999887777766

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.09  E-value=8.5e-08  Score=73.23  Aligned_cols=200  Identities=19%  Similarity=0.127  Sum_probs=125.2

Q ss_pred             ecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec-ccc
Q 036585           23 SMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF-KGH  101 (304)
Q Consensus        23 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~-~~~  101 (304)
                      ...++.++++++.++.+..||..+|+.+.+..... ++.... ...+..++++..   ++.++.+|..+|+..... ...
T Consensus        32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~~v~v~~~---~~~l~~~d~~tG~~~W~~~~~~  106 (238)
T PF13360_consen   32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVDGGRVYVGTS---DGSLYALDAKTGKVLWSIYLTS  106 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEETTEEEEEET---TSEEEEEETTTSCEEEEEEE-S
T ss_pred             EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eecccccccccc---eeeeEecccCCcceeeeecccc
Confidence            44577888888899999999999999887766422 211111 235666666666   889999999999887763 322


Q ss_pred             c---ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc-e
Q 036585          102 H---DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA-N  177 (304)
Q Consensus       102 ~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~  177 (304)
                      .   ...........+..++.+..++.|..+|+++++.+...........               ..+.    ....+ .
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~---------------~~~~----~~~~~~~  167 (238)
T PF13360_consen  107 SPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS---------------SPIS----SFSDING  167 (238)
T ss_dssp             SCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-----------------EE----EETTEEE
T ss_pred             ccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC---------------ccee----eeccccc
Confidence            1   1112222222377888888899999999999998777764321100               0000    00011 1


Q ss_pred             EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585          178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA  254 (304)
Q Consensus       178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~  254 (304)
                      .+.+. ++ .+++++.++.+.-+|+.+++.+....     ...... ...+++..|+.++.++.|..||+++++.+-
T Consensus       168 ~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-----~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  168 SPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP-----ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC-----SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             ceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec-----CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            22222 44 67777777754444999998664221     122222 134677788887799999999999998754

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.08  E-value=3.9e-07  Score=69.90  Aligned_cols=197  Identities=11%  Similarity=0.077  Sum_probs=121.8

Q ss_pred             EEEEcc-CCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEc-CCCCEEEEcccCCeEEEEeCCcceeece
Q 036585           62 LVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLC-SSKDCFISGSLDRTVLLWDQRAEKCQGL  139 (304)
Q Consensus        62 ~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~  139 (304)
                      ++.|.+ ++..+++-..   .+.|..|+..+++... +... . ...+.+. +++ .++.+...+ +.++|+.+++....
T Consensus         4 gp~~d~~~g~l~~~D~~---~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIP---GGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEETTTTEEEEEETT---TTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEE
T ss_pred             ceEEECCCCEEEEEEcC---CCEEEEEECCCCeEEE-EecC-C-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEE
Confidence            578888 4444444444   8899999998876533 2211 2 6677777 665 455555544 45559888866555


Q ss_pred             EEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC--------CeEEEEEcCCCceeEEE
Q 036585          140 LRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME--------GHIHVLDSFRGTLLSTY  211 (304)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~  211 (304)
                      .......                        ......+.+++.|+|++.++....        |.|..++.. ++.....
T Consensus        76 ~~~~~~~------------------------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~  130 (246)
T PF08450_consen   76 ADLPDGG------------------------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA  130 (246)
T ss_dssp             EEEETTC------------------------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred             eeccCCC------------------------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence            4432110                        022456889999999966665433        568888876 5544444


Q ss_pred             EeCCCCCCcceEEEEcCCCcEEE-EecCCCcEEEEecCCCce----eeee---eccCCCCceEEeCCCCcEEEEecCc--
Q 036585          212 NVKPVSRNSTLEASFSPEGMFVI-SGSGDGSVHAWSVRSGKE----VASW---MSFDTEPPVIKWAPGSLMFVTGSSE--  281 (304)
Q Consensus       212 ~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~v~d~~~~~~----~~~~---~~~~~~i~~~~~~~~~~~l~s~~~d--  281 (304)
                      .    .-...+.++|+|+++.|+ +-+..+.|..+++.....    ...+   ....+..-.+++..+|++.++.-..  
T Consensus       131 ~----~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~  206 (246)
T PF08450_consen  131 D----GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR  206 (246)
T ss_dssp             E----EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred             c----CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence            3    345567899999998776 456778899999863221    1222   2222236789999999877664333  


Q ss_pred             eEEeccCCcccccc
Q 036585          282 LSFWIPDLSKLGAY  295 (304)
Q Consensus       282 ~~iw~~~~~~~~~~  295 (304)
                      |.+++.+.+.+..+
T Consensus       207 I~~~~p~G~~~~~i  220 (246)
T PF08450_consen  207 IVVFDPDGKLLREI  220 (246)
T ss_dssp             EEEEETTSCEEEEE
T ss_pred             EEEECCCccEEEEE
Confidence            88888886655443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.07  E-value=2.7e-09  Score=88.55  Aligned_cols=229  Identities=18%  Similarity=0.202  Sum_probs=153.2

Q ss_pred             cceeeeecceeeEeecccCcEEEEeeCCCeEEEEecCCc-ceeeeecc-cccceeEEEEccCCC--eEEEEecCCCCCce
Q 036585            9 EDKVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAA-TCLKTINS-KKYGVDLVCFTSHPT--TVIYSSKNGWDESL   84 (304)
Q Consensus         9 ~~~~~~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~d~~i   84 (304)
                      ...+.+.+.-+.+...|.|+-+|.++.-| +.+.|+... .+.+-+.. ..-.|-...|+|+..  +-++...   ...-
T Consensus        18 slsl~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts---~qka   93 (1081)
T KOG0309|consen   18 SLSLKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS---NQKA   93 (1081)
T ss_pred             eeEEEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC---cchh
Confidence            34455566677889999999999999887 666676642 33222221 112466778887654  3333333   5566


Q ss_pred             EEEEccCc---eeeeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585           85 RLLSLHDN---KYSRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE  160 (304)
Q Consensus        85 ~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (304)
                      .+|++...   .....+.+|...|+.+.|+|+. ..+++++.|-.+..||+++.....-.                    
T Consensus        94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys--------------------  153 (1081)
T KOG0309|consen   94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS--------------------  153 (1081)
T ss_pred             hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee--------------------
Confidence            68988542   3344566899999999999854 58999999999999999875432111                    


Q ss_pred             CCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecC
Q 036585          161 KGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSG  238 (304)
Q Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~  238 (304)
                              ...-......++|+-....+.+.+....|++||++.| .++..++   .+-..++.+.|.. -...+.+.+.
T Consensus       154 --------~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K---~~vs~vn~~~fnr~~~s~~~s~~~  222 (1081)
T KOG0309|consen  154 --------TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK---GHVSSVNSIDFNRFKYSEIMSSSN  222 (1081)
T ss_pred             --------eecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEec---ccceeeehHHHhhhhhhhhcccCC
Confidence                    1112245566888876666677777788999999876 4556666   4677777787765 2346788999


Q ss_pred             CCcEEEEecCCCce-eeeeeccCCCCceEEeCCCC
Q 036585          239 DGSVHAWSVRSGKE-VASWMSFDTEPPVIKWAPGS  272 (304)
Q Consensus       239 dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~  272 (304)
                      |++|++||...... .........+|..-.+-|-|
T Consensus       223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg  257 (1081)
T KOG0309|consen  223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG  257 (1081)
T ss_pred             CCceeeecccccccccceeccccCcceeccccccC
Confidence            99999999865432 22223345667666666643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=7.5e-08  Score=80.69  Aligned_cols=101  Identities=12%  Similarity=0.130  Sum_probs=79.4

Q ss_pred             EEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe---------cCCCcEEEEecCCCcee--ee
Q 036585          187 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG---------SGDGSVHAWSVRSGKEV--AS  255 (304)
Q Consensus       187 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---------~~dg~i~v~d~~~~~~~--~~  255 (304)
                      ++++|...|+|.++|+.++.....+.   .|...|.++.|-....++-.+         +.-+.+.+-|+++|...  +.
T Consensus       439 LvAvGT~sGTV~vvdvst~~v~~~fs---vht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~  515 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTNAVAASFS---VHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRG  515 (1062)
T ss_pred             eEEeecCCceEEEEEecchhhhhhhc---ccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccccccc
Confidence            67889999999999999999888888   688899999997766554333         22346888899987542  22


Q ss_pred             e-eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          256 W-MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       256 ~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      + .....+|+.+..+..++||+..-.+  +.+|+....
T Consensus       516 l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  516 LQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             CCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence            2 3456789999999999999999988  999998543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.04  E-value=8.3e-10  Score=58.05  Aligned_cols=39  Identities=31%  Similarity=0.586  Sum_probs=36.6

Q ss_pred             ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEe
Q 036585           92 NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD  130 (304)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  130 (304)
                      ++++.++.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.04  E-value=5.1e-07  Score=74.30  Aligned_cols=218  Identities=13%  Similarity=0.099  Sum_probs=131.7

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeeccccc-ce-e-----EEE--EccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKY-GV-D-----LVC--FTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~v-~-----~~~--~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      .+..+++++.++.+.-+|.++|+.+-+...... .. .     .+.  ..-.+..++.++.   ++.+.-+|.++|+.+.
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---~g~l~ald~~tG~~~W  144 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---KGQVYALNAEDGEVAW  144 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---CCEEEEEECCCCCCcc
Confidence            367888888889999999999988765543220 00 0     000  0114566777776   8999999999999877


Q ss_pred             ecccccccEEE-EEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc-------ceeEecCCCeEEEecCCCeEEEE
Q 036585           97 YFKGHHDRVVL-LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------PAAAYDDQGLVFGYEKGPLDIFS  168 (304)
Q Consensus        97 ~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
                      ..+... .+.+ ...  .+..++.+..++.+..+|.++++..........       .......+..++...++.+..++
T Consensus       145 ~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d  221 (394)
T PRK11138        145 QTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL  221 (394)
T ss_pred             cccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence            665332 2221 111  234677778889999999999998877654311       11112222333444444433332


Q ss_pred             ecCC---------CC-------CceEEEEec--CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC
Q 036585          169 VGGD---------IS-------DANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  230 (304)
Q Consensus       169 ~~~~---------~~-------~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  230 (304)
                      ....         ..       ....+..+|  .+..+++++.+|.+..+|..+|+.+.+....    . ...+.  .++
T Consensus       222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----~-~~~~~--~~~  294 (394)
T PRK11138        222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG----S-VNDFA--VDG  294 (394)
T ss_pred             ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC----C-ccCcE--EEC
Confidence            2210         00       000111222  3456777788999999999999887665421    1 11122  245


Q ss_pred             cEEEEecCCCcEEEEecCCCceeeee
Q 036585          231 MFVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       231 ~~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      ..++.++.+|.+..+|..+++.+-..
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEcc
Confidence            67888888999999999999875543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.03  E-value=3.8e-09  Score=76.89  Aligned_cols=154  Identities=16%  Similarity=0.141  Sum_probs=96.9

Q ss_pred             ecccCcEEEEeeCCCeEEEEecCCcce-eeeecccccceeEEEEccCCCeEEEEecCC--CCCceEEEEccCceeeeecc
Q 036585           23 SMEVGIYLVTASDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        23 ~~~~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd~~~~~~~~~~~   99 (304)
                      ++..++.++++..||.+.+.+.+.... ...+..-...-.+.+....++.+.++....  .-+..+.|+++..+....-.
T Consensus        97 ~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~  176 (319)
T KOG4714|consen   97 CTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK  176 (319)
T ss_pred             ccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence            334478899999999999999765211 111111111222233334555555544210  03455566665433222212


Q ss_pred             cccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585          100 GHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV  178 (304)
Q Consensus       100 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  178 (304)
                      .-...|.+++-+| +.+.+++|+.||.+-+||.+.......+                            +..|+.++..
T Consensus       177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~----------------------------l~ahk~~i~e  228 (319)
T KOG4714|consen  177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL----------------------------LKAHKAEIWE  228 (319)
T ss_pred             cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH----------------------------HHHhhhhhhh
Confidence            2233589999998 4557788899999999999876432221                            1257788999


Q ss_pred             EEEec-CCcEEEEeeCCCeEEEEEcCC
Q 036585          179 VKFSN-DGRLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       179 ~~~~~-~~~~l~~~~~dg~i~~~d~~~  204 (304)
                      +-|+| ++..|++++.||.+..||..+
T Consensus       229 V~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  229 VHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eeccCCCchheeEecCCCcEEEEcCCC
Confidence            99999 567899999999999999653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=3.5e-08  Score=82.81  Aligned_cols=181  Identities=10%  Similarity=0.128  Sum_probs=129.9

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ  137 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  137 (304)
                      ..+.|+++  .++.++.|+.   +|.|++++....-  .+...|...      ..+|.++++|+.||+|.|-.+-+.+..
T Consensus        40 D~is~~av--~~~~~~~GtH---~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~  106 (846)
T KOG2066|consen   40 DAISCCAV--HDKFFALGTH---RGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI  106 (846)
T ss_pred             hHHHHHHh--hcceeeeccc---cceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence            35666666  5788999998   9999999876432  333335443      558999999999999999988877766


Q ss_pred             ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC-----CcEEEEeeCCCeEEEEEcCCCcee--EE
Q 036585          138 GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND-----GRLMLLTTMEGHIHVLDSFRGTLL--ST  210 (304)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~~d~~~~~~~--~~  210 (304)
                      ..+...                              .++.+++++|+     .+.+++|+..| +.++.-+--...  ..
T Consensus       107 ~~~df~------------------------------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~  155 (846)
T KOG2066|consen  107 TQYDFK------------------------------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV  155 (846)
T ss_pred             eeEecC------------------------------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee
Confidence            555432                              57788999997     46799999988 777763211111  12


Q ss_pred             EEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCC------CceEEeCCCCcEEEEecCceEE
Q 036585          211 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTE------PPVIKWAPGSLMFVTGSSELSF  284 (304)
Q Consensus       211 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------i~~~~~~~~~~~l~s~~~d~~i  284 (304)
                      ..   ...++|.++.|  .|+++|-++.+| |+|||+.+.+.+..++.....      ...+.|.++.+.++--+..|+|
T Consensus       156 l~---~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i  229 (846)
T KOG2066|consen  156 LS---EGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKI  229 (846)
T ss_pred             ee---cCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEE
Confidence            22   47789999999  577999998777 999999988877666433222      3567888777666655555777


Q ss_pred             eccC
Q 036585          285 WIPD  288 (304)
Q Consensus       285 w~~~  288 (304)
                      ..+.
T Consensus       230 ~~I~  233 (846)
T KOG2066|consen  230 CSIK  233 (846)
T ss_pred             EEEe
Confidence            7765

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.03  E-value=2.9e-10  Score=96.03  Aligned_cols=196  Identities=18%  Similarity=0.259  Sum_probs=144.6

Q ss_pred             ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCC--e
Q 036585           48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDR--T  125 (304)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~  125 (304)
                      +...++..|+...+|++|+-+.++|+.|+.   .|.|+++++.+|........|..+|+-+.-+.+|..+++.+.-.  .
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~---~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSH---AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeec---cceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence            345567778889999999999999999999   99999999999999999999999999999988998776654322  4


Q ss_pred             EEEEeCCc-ceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585          126 VLLWDQRA-EKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       126 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  204 (304)
                      ..+|++.. +.....+                                 ..-.++.|+..-+.-+.|+......+||+.+
T Consensus      1169 saLW~~~s~~~~~Hsf---------------------------------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF---------------------------------DEDKAVKFSNSLQFRALGTEADDALLYDVQT 1215 (1516)
T ss_pred             HHHhccccccCccccc---------------------------------cccceeehhhhHHHHHhcccccceEEEeccc
Confidence            67888764 2222222                                 2345688887766667777777899999999


Q ss_pred             CceeEEEEe-CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCceE
Q 036585          205 GTLLSTYNV-KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELS  283 (304)
Q Consensus       205 ~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~  283 (304)
                      +.++.++-. .......-+...|+|+..+++   .||  .+||.+..+.+..+......+ .=.|+|.|..++.-+.   
T Consensus      1216 ~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE--- 1286 (1516)
T KOG1832|consen 1216 CSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE--- 1286 (1516)
T ss_pred             CcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech---
Confidence            988777432 112223346788999998887   566  589999887777775444222 2359999988776553   


Q ss_pred             EeccC
Q 036585          284 FWIPD  288 (304)
Q Consensus       284 iw~~~  288 (304)
                      ||++.
T Consensus      1287 IwD~R 1291 (1516)
T KOG1832|consen 1287 IWDMR 1291 (1516)
T ss_pred             hhhhH
Confidence            55543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.02  E-value=1e-06  Score=67.43  Aligned_cols=211  Identities=12%  Similarity=0.119  Sum_probs=137.3

Q ss_pred             ceeEEEEccCCC-eEEEEecCCCCCceEEEEccCceeeeecccccccE--EEEEEcCCCCEEEEcc-----cCCeEEEEe
Q 036585           59 GVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV--VLLSLCSSKDCFISGS-----LDRTVLLWD  130 (304)
Q Consensus        59 ~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~-----~dg~i~iwd  130 (304)
                      ....++.+|... .++.+-..  .....+||..+++....+....+.-  =.-.|++||++|++.-     ..|.|-+||
T Consensus         6 RgH~~a~~p~~~~avafaRRP--G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRP--GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCC--CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            345688888544 44555442  4567889999998877765433322  1367999999999864     357899999


Q ss_pred             CC-cceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee-----------------
Q 036585          131 QR-AEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT-----------------  192 (304)
Q Consensus       131 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------------  192 (304)
                      .+ +.+.+..+...+                             -....+.+.|||+.|+++.                 
T Consensus        84 ~~~~~~ri~E~~s~G-----------------------------IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   84 AARGYRRIGEFPSHG-----------------------------IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             CcCCcEEEeEecCCC-----------------------------cChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            98 444444444322                             2334466667776565542                 


Q ss_pred             -CCCeEEEEEcCCCceeEEEEeCC-CCCCcceEEEEcCCCcEEEEecCCC-------cEEEEecCCCceeeee-------
Q 036585          193 -MEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDG-------SVHAWSVRSGKEVASW-------  256 (304)
Q Consensus       193 -~dg~i~~~d~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg-------~i~v~d~~~~~~~~~~-------  256 (304)
                       .+..+.+.|..+|+.+......+ .+...+.-+++.++|..++..-..|       .|.+++..  +.+..+       
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~  212 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQW  212 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHH
Confidence             34457778889999888866432 3667899999999997776654433       24455432  222222       


Q ss_pred             eccCCCCceEEeCCCCcEEEEecCc---eEEeccCCccccccccCCCCC
Q 036585          257 MSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPDLSKLGAYVGRNRGC  302 (304)
Q Consensus       257 ~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~~~~~~~~~~~~g~  302 (304)
                      ....+.+-+|++++++.+++..+-.   +.+|+.....+.....-.++|
T Consensus       213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~c  261 (305)
T PF07433_consen  213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDAC  261 (305)
T ss_pred             HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCcee
Confidence            2345678899999999988877765   889988776665444444443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=99.02  E-value=1e-07  Score=83.57  Aligned_cols=221  Identities=12%  Similarity=0.128  Sum_probs=139.2

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ  137 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  137 (304)
                      ..|.++.|..+...++.+..   .|.|.+-|.++.... ....-...|.+++|+||++.++..+..+++.+-+- +..++
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~---~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i  143 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITA---LGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPI  143 (1265)
T ss_pred             cceEEEEEecccceEEEEec---CCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccch
Confidence            57999999999999999988   999999988776432 23335678999999999999998888888776432 11111


Q ss_pred             ceEEE-------eccceeEecCCCeEEEecCCCeEEEEecC---------CCCCceEEEEecCCcEEEEee-----CCCe
Q 036585          138 GLLRV-------QGRPAAAYDDQGLVFGYEKGPLDIFSVGG---------DISDANVVKFSNDGRLMLLTT-----MEGH  196 (304)
Q Consensus       138 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~-----~dg~  196 (304)
                      .....       .....+-|......+....+.........         ..+.=+.+.|--||+++++..     ....
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence            11111       11112222222222222222111111111         112234589999999999842     3378


Q ss_pred             EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec---CCCcEEEEecCCCceee----eeeccCCCCceEEeC
Q 036585          197 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVHAWSVRSGKEVA----SWMSFDTEPPVIKWA  269 (304)
Q Consensus       197 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~v~d~~~~~~~~----~~~~~~~~i~~~~~~  269 (304)
                      |++||.+ |..-..-.   ...+.-.+++|-|.|..+++-.   .|+.|.+|.- +|-...    .++....++..++|+
T Consensus       224 irV~drE-g~Lns~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wn  298 (1265)
T KOG1920|consen  224 IRVYDRE-GALNSTSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWN  298 (1265)
T ss_pred             EEEeccc-chhhcccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeec
Confidence            9999966 54433332   2334455799999999998863   5667999984 443333    233344559999999


Q ss_pred             CCCcEEEE---ecCc--eEEeccC
Q 036585          270 PGSLMFVT---GSSE--LSFWIPD  288 (304)
Q Consensus       270 ~~~~~l~s---~~~d--~~iw~~~  288 (304)
                      .++..|+.   ....  +++|...
T Consensus       299 s~sdiLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  299 SNSDILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             CCCCceeeeecccccceEEEEEec
Confidence            99999988   3333  8888653

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.01  E-value=1.6e-06  Score=63.82  Aligned_cols=253  Identities=13%  Similarity=0.050  Sum_probs=134.9

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV  105 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v  105 (304)
                      -|++++.|...|.+.+.+.++|.....+.....--......+++..+..++.   |+..+..|..+..++...+-..+-.
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgsh---d~~~yalD~~~~~cVykskcgG~~f  138 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSH---DGNFYALDPKTYGCVYKSKCGGGTF  138 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecC---CCcEEEecccccceEEecccCCcee
Confidence            4889999999999999999999887766644322223345678889999998   9999999999988887766433333


Q ss_pred             EEEEEcCCCCEEEEcccCCeEEEEeCCcce--eeceEEEe----------ccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585          106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEK--CQGLLRVQ----------GRPAAAYDDQGLVFGYEKGPLDIFSVGGDI  173 (304)
Q Consensus       106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                      .+-+..|-...|+.+...|.+.--......  ........          +.......-+|.+..++...-.+|......
T Consensus       139 ~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~G  218 (354)
T KOG4649|consen  139 VSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKG  218 (354)
T ss_pred             ccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCC
Confidence            444555522334444444554443433321  11111100          111122234555666655556666543221


Q ss_pred             CCceEEEEe-cCCcEEEEeeCCCe--------EEEEEcCCCceeEEEEeCCCCCCcceEEEEc-C---CCcEEEEecCCC
Q 036585          174 SDANVVKFS-NDGRLMLLTTMEGH--------IHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-P---EGMFVISGSGDG  240 (304)
Q Consensus       174 ~~v~~~~~~-~~~~~l~~~~~dg~--------i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s-~---~~~~l~~~~~dg  240 (304)
                      .-...-+.+ |..+.+..+..+..        -.+|..++|.....+..+.      ...+++ |   ..++|..++.||
T Consensus       219 pIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~------l~F~~h~~~~S~~~ll~~~s~dg  292 (354)
T KOG4649|consen  219 PIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK------LRFDLHSPGISYPKLLRRSSGDG  292 (354)
T ss_pred             ceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc------cceeccCCCCcchhhhhhhcCCC
Confidence            111111111 33233333333322        2356666664444433111      012221 1   245677888999


Q ss_pred             cEEEEecCCCceeeeeeccCCCCceEE--------e-CC---CCcEEEEecCc-eEEeccCC
Q 036585          241 SVHAWSVRSGKEVASWMSFDTEPPVIK--------W-AP---GSLMFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       241 ~i~v~d~~~~~~~~~~~~~~~~i~~~~--------~-~~---~~~~l~s~~~d-~~iw~~~~  289 (304)
                      .+.|.-.+  +.+.+...|.+.+..+.        | +|   +|++|+.+-+| ++-|+++.
T Consensus       293 kv~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~  352 (354)
T KOG4649|consen  293 KVMILMTS--KSLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDT  352 (354)
T ss_pred             cEEEEEec--ccccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEeccc
Confidence            88887433  22333333433332222        2 23   56666655555 88888764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=9.1e-08  Score=81.00  Aligned_cols=206  Identities=15%  Similarity=0.180  Sum_probs=135.5

Q ss_pred             EEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc-EEEEEEcCCCCEEEEcccCC-----eEEEEeCCccee
Q 036585           63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR-VVLLSLCSSKDCFISGSLDR-----TVLLWDQRAEKC  136 (304)
Q Consensus        63 ~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~  136 (304)
                      -+|++.+..++.|+.   +|.|.+++-. -+.++.++.+... |..+....+..+|++.+.|+     .+++|+++.-..
T Consensus        29 sc~~s~~~~vvigt~---~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTA---DGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             eEEcCCCceEEEeec---cccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence            467888999999998   8988777632 3444777777766 44443334446777766554     599999875432


Q ss_pred             eceEEEeccceeEecCCCeEEEecCCCeEEEEec--CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC---CCceeEEE
Q 036585          137 QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG--GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF---RGTLLSTY  211 (304)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~  211 (304)
                      ...-     .++             +..+++...  ....++.+++.+.+-+.+|+|-.+|.|..+.-.   ....  +.
T Consensus       105 n~sP-----~c~-------------~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs--r~  164 (933)
T KOG2114|consen  105 NNSP-----QCL-------------YEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS--RQ  164 (933)
T ss_pred             CCCc-----cee-------------eeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc--ce
Confidence            1100     000             000112111  235788999999999999999999999998632   1111  11


Q ss_pred             EeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce-eeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCC
Q 036585          212 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE-VASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       212 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~  289 (304)
                      ........+|+.+++..+++-++-+..-..|.+|.+....+ ...+..|..+++|..|++....+++++.. +.+|+.+.
T Consensus       165 ~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~  244 (933)
T KOG2114|consen  165 DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG  244 (933)
T ss_pred             eeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCC
Confidence            11224678999999999888733333345699999974443 45577888899999999877756666666 99999886


Q ss_pred             ccc
Q 036585          290 SKL  292 (304)
Q Consensus       290 ~~~  292 (304)
                      ...
T Consensus       245 ~~~  247 (933)
T KOG2114|consen  245 RGP  247 (933)
T ss_pred             cce
Confidence            554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.99  E-value=3.9e-08  Score=83.22  Aligned_cols=112  Identities=9%  Similarity=0.087  Sum_probs=91.5

Q ss_pred             cceeeEeecccCcEEEEee----CCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC
Q 036585           16 LSEEILQSMEVGIYLVTAS----DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   91 (304)
Q Consensus        16 ~~~~~i~~~~~~~~l~~~~----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~   91 (304)
                      ..+.+.+|+|...++|+++    ..|+|.||- ++|++-+....+ -.+.+++|+|..-.|+.+-.   -|.+.+|...+
T Consensus        16 avsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P-~hatSLCWHpe~~vLa~gwe---~g~~~v~~~~~   90 (1416)
T KOG3617|consen   16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP-VHATSLCWHPEEFVLAQGWE---MGVSDVQKTNT   90 (1416)
T ss_pred             ccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc-eehhhhccChHHHHHhhccc---cceeEEEecCC
Confidence            3455678999999999887    457898884 667654433322 23567999999988888887   89999999988


Q ss_pred             ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC
Q 036585           92 NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR  132 (304)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  132 (304)
                      .+.......|+.+|..+.|+|+|..++++..-|.+.+|...
T Consensus        91 ~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   91 TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            88777777899999999999999999999999999999876

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1.5e-07  Score=79.70  Aligned_cols=210  Identities=11%  Similarity=0.099  Sum_probs=136.0

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccc-eeEEEEccCCCeEEEEecCCC-CC-ceEEEEccCc---
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYG-VDLVCFTSHPTTVIYSSKNGW-DE-SLRLLSLHDN---   92 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~~-d~-~i~vwd~~~~---   92 (304)
                      .+-.+++.+..++.|+.+|.|.+.+ ...+.++.++.+... |..+-...+...|++.+.+.. +- .+++|+++.-   
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            4455677889999999999998887 335555778877766 555554445567887776311 12 6999999643   


Q ss_pred             ---eee---eecc----cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585           93 ---KYS---RYFK----GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG  162 (304)
Q Consensus        93 ---~~~---~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (304)
                         +++   +.+.    ....++.+++.+.+-+.+++|-.+|.|..+.-.--+.... +                     
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r---------------------  163 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-R---------------------  163 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-c---------------------
Confidence               222   1111    1345789999999999999999999999885321110000 0                     


Q ss_pred             CeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcE
Q 036585          163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV  242 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  242 (304)
                         .-.......+|+.+++..+++.++.......|.+|.+....+.  ......++..+.|..|++....+++++. ..+
T Consensus       164 ---~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~--~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l  237 (933)
T KOG2114|consen  164 ---QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPS--LKVLDNNGISLNCSSFSDGTYQFICAGS-EFL  237 (933)
T ss_pred             ---eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcc--eeeeccCCccceeeecCCCCccEEEecC-ceE
Confidence               0001124478999999999987444444558999998743322  2222257788999999886654555543 459


Q ss_pred             EEEecCCCceeeeee
Q 036585          243 HAWSVRSGKEVASWM  257 (304)
Q Consensus       243 ~v~d~~~~~~~~~~~  257 (304)
                      .+|+....++-..+.
T Consensus       238 ~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  238 YFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEEcCCCcceeeeec
Confidence            999987655544443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=6.2e-08  Score=76.10  Aligned_cols=211  Identities=14%  Similarity=0.166  Sum_probs=141.1

Q ss_pred             eecccCcEEEEeeC-CCeEEEEecCCcceeeeecccccceeEEEEcc-CC--C-eEEEEecCCCCCceEEEEccCce--e
Q 036585           22 QSMEVGIYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HP--T-TVIYSSKNGWDESLRLLSLHDNK--Y   94 (304)
Q Consensus        22 ~~~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~-~l~~~~~~~~d~~i~vwd~~~~~--~   94 (304)
                      ..+.+|.++.|.+. |..++++|+++-..+.-++... ....+.|.. .|  . .+++....  ++.+.++|-....  .
T Consensus        60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-lPg~a~wv~skGd~~s~IAVs~~~--sg~i~VvD~~~d~~q~  136 (558)
T KOG0882|consen   60 AVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-LPGFAEWVTSKGDKISLIAVSLFK--SGKIFVVDGFGDFCQD  136 (558)
T ss_pred             hccccceeEeeccCcccceeEEEeeccchhhhccccc-CCCceEEecCCCCeeeeEEeeccc--CCCcEEECCcCCcCcc
Confidence            34456888888777 9999999998765543333221 111223322 22  1 34444443  8999999976543  2


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCc-ce-----eeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA-EK-----CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS  168 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
                      ...-.-|..+|.++.++|-+..+++....|.|.-|..+. .+     ....++..                    -.++.
T Consensus       137 ~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e--------------------TdLy~  196 (558)
T KOG0882|consen  137 GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE--------------------TDLYG  196 (558)
T ss_pred             ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccccccc--------------------chhhc
Confidence            333346999999999999999999999999999998763 11     11111111                    11222


Q ss_pred             ecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC------------------------------CCCC
Q 036585          169 VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK------------------------------PVSR  218 (304)
Q Consensus       169 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------------------------------~~~~  218 (304)
                      .........++.|+|++..+.+-+.|..|+++++++++....+...                              ....
T Consensus       197 f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~  276 (558)
T KOG0882|consen  197 FPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGS  276 (558)
T ss_pred             ccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcC
Confidence            3344567789999999999999999999999999998766554310                              0011


Q ss_pred             CcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585          219 NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      ..-+.+.|...|++|+-|+-=| |++.++.+++..+.+
T Consensus       277 ~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  277 TVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             cccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence            2334578999999999988766 899999888765544

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.95  E-value=2.8e-07  Score=77.03  Aligned_cols=226  Identities=12%  Similarity=0.043  Sum_probs=136.7

Q ss_pred             eecceeeEeecccCcEEEE-eeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCC-CCceEEEEccC
Q 036585           14 LELSEEILQSMEVGIYLVT-ASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-DESLRLLSLHD   91 (304)
Q Consensus        14 ~~~~~~~i~~~~~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-d~~i~vwd~~~   91 (304)
                      +...+-.+-+.++|+.+.. .-..+.+.+.|.++.+...++.-.. ....++++|+++++++.+.+.. ..++...+..+
T Consensus       191 ~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e  269 (635)
T PRK02888        191 FCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE  269 (635)
T ss_pred             EeCcccccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeecccc
Confidence            3334445556667876543 3345678889999888777766544 4567899999999999874211 22333333222


Q ss_pred             ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCc-----ceeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585           92 NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA-----EKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI  166 (304)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (304)
                      ......+.-  ..+  -++.++|++...+  ++.|.+.|.++     ......+...                       
T Consensus       270 ~d~~vvfni--~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVG-----------------------  320 (635)
T PRK02888        270 RDWVVVFNI--ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVP-----------------------  320 (635)
T ss_pred             CceEEEEch--HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECC-----------------------
Confidence            111111110  000  1334577766653  57899999887     3333333322                       


Q ss_pred             EEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCCce------------eEEEEeCCCCCCcceEEEEcCCCcEE
Q 036585          167 FSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTL------------LSTYNVKPVSRNSTLEASFSPEGMFV  233 (304)
Q Consensus       167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~------------~~~~~~~~~~~~~i~~~~~s~~~~~l  233 (304)
                             .....+.++|||+++++++. +.++.++|+.+.+.            ..+..    -.......+|+++|+..
T Consensus       321 -------KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve----vGlGPLHTaFDg~G~ay  389 (635)
T PRK02888        321 -------KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE----LGLGPLHTAFDGRGNAY  389 (635)
T ss_pred             -------CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec----cCCCcceEEECCCCCEE
Confidence                   34567999999999887654 88999999987553            22322    22333447899999877


Q ss_pred             EEecCCCcEEEEecCC----------CceeeeeeccCCC-----CceEEeCCCCcEEEEecC
Q 036585          234 ISGSGDGSVHAWSVRS----------GKEVASWMSFDTE-----PPVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       234 ~~~~~dg~i~v~d~~~----------~~~~~~~~~~~~~-----i~~~~~~~~~~~l~s~~~  280 (304)
                      .+-.-|..|..||+..          ...+..+.-|-.+     ..+=.-.|||++|++...
T Consensus       390 tslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        390 TTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             EeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence            7778899999999875          2234444333222     112223578888877643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.95  E-value=8.2e-06  Score=63.41  Aligned_cols=232  Identities=14%  Similarity=0.142  Sum_probs=137.2

Q ss_pred             eEeecccCcEEEEee----------CCCeEEEEecCCcceeeeeccccc-------ceeEEEEccCCCeEEEEecCCCCC
Q 036585           20 ILQSMEVGIYLVTAS----------DDESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHPTTVIYSSKNGWDE   82 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~~~~d~   82 (304)
                      .+..+|+++.+++++          ..-.|.+||.++..+...+.-...       ....++++.+++++++.... .-.
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T-Pa~  118 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT-PAT  118 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES-SSE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC-CCC
Confidence            356789999888764          233589999999887765543321       23346788899888876542 267


Q ss_pred             ceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC-cceeeceEEE----eccce---eEec-C-
Q 036585           83 SLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRV----QGRPA---AAYD-D-  152 (304)
Q Consensus        83 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~----~~~~~---~~~~-~-  152 (304)
                      +|.|.|+..++.+..+.. .+. ..+-=+ ...-|.+-+.||.+.-..+. .++.......    ...+.   ..+. . 
T Consensus       119 SVtVVDl~~~kvv~ei~~-PGC-~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~  195 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDT-PGC-WLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG  195 (342)
T ss_dssp             EEEEEETTTTEEEEEEEG-TSE-EEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred             eEEEEECCCCceeeeecC-CCE-EEEEec-CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence            899999999888776652 221 111111 22357777889998888887 3443321110    01111   1111 1 


Q ss_pred             CCeEEEecCCCeEEEEecCC---------------------CCCceEEEEecCCcEEEEeeC---CC-------eEEEEE
Q 036585          153 QGLVFGYEKGPLDIFSVGGD---------------------ISDANVVKFSNDGRLMLLTTM---EG-------HIHVLD  201 (304)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~---------------------~~~v~~~~~~~~~~~l~~~~~---dg-------~i~~~d  201 (304)
                      +..++..-.|.+...++.+.                     .+....+++++..+.|++--.   +|       .|.+||
T Consensus       196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D  275 (342)
T PF06433_consen  196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD  275 (342)
T ss_dssp             TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred             CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence            12333333444444333332                     234455778776555554221   22       489999


Q ss_pred             cCCCceeEEEEeCCCCCCcceEEEEcCCCc-EEEEe-cCCCcEEEEecCCCceeeeeecc
Q 036585          202 SFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG-SGDGSVHAWSVRSGKEVASWMSF  259 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~-~~dg~i~v~d~~~~~~~~~~~~~  259 (304)
                      +.+++.+.++..    ..++.+++.+.+.+ +|++. ..++.+.+||..+++.+.++..-
T Consensus       276 ~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  276 LKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             TTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             CCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            999999999983    45677899999765 55544 46789999999999999888643

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.95  E-value=5.9e-09  Score=75.94  Aligned_cols=187  Identities=14%  Similarity=0.122  Sum_probs=109.6

Q ss_pred             cEEEEeeCCCeEEEEecCCcc------------eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           28 IYLVTASDDESIRLYDVTAAT------------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      ..|+++..++.+.....-++.            +...+..|.++-.+-+.+-.++.++++..   ||.+.+++.+.-..+
T Consensus        48 ~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~---dg~~~v~s~~~~~~~  124 (319)
T KOG4714|consen   48 YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA---DGSLAVFSTDKDLAL  124 (319)
T ss_pred             heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCC---CceEEEEechHHHhh
Confidence            456666666555554433222            22333344444444444556778888888   999999987652111


Q ss_pred             -eecc-cccccEEEEEEcCCCCEEEEccc-----CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585           96 -RYFK-GHHDRVVLLSLCSSKDCFISGSL-----DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS  168 (304)
Q Consensus        96 -~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
                       ..+. .|.+. .+.++...++.+.++.-     -+..+.|+++..+....-.                           
T Consensus       125 ~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~---------------------------  176 (319)
T KOG4714|consen  125 MSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK---------------------------  176 (319)
T ss_pred             hhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccc---------------------------
Confidence             1111 12211 12222234444444332     1233444444322211111                           


Q ss_pred             ecCCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEe
Q 036585          169 VGGDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWS  246 (304)
Q Consensus       169 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d  246 (304)
                        .....|.+++-+|.. ..+++|+.||.+.+||.+.......+-  ..|+.++..+-|+| ++..|+++++||.+..||
T Consensus       177 --~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l--~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  177 --KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL--KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             --cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH--HHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence              112348888888854 567778899999999999874333322  26889999999999 678999999999999999


Q ss_pred             cCC
Q 036585          247 VRS  249 (304)
Q Consensus       247 ~~~  249 (304)
                      ..+
T Consensus       253 as~  255 (319)
T KOG4714|consen  253 AST  255 (319)
T ss_pred             CCC
Confidence            763

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.91  E-value=5.4e-09  Score=54.87  Aligned_cols=39  Identities=13%  Similarity=0.392  Sum_probs=36.7

Q ss_pred             cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585           47 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   88 (304)
Q Consensus        47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd   88 (304)
                      ++++.++.+|...|.+++|+|++..+++++.   |+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~---D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSS---DGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEET---TSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCC---CCEEEEEC
Confidence            4678899999999999999999999999998   99999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.91  E-value=1.3e-06  Score=77.03  Aligned_cols=197  Identities=11%  Similarity=0.145  Sum_probs=127.4

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc----cCceee
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL----HDNKYS   95 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~----~~~~~~   95 (304)
                      .+.+..+.+-++.+...|.|.+-|.++.... ....-..+|.+++|+||...++..+.   .+++.+-+-    -..+++
T Consensus        73 s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~---~~tll~mT~~f~~i~E~~L  148 (1265)
T KOG1920|consen   73 SVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITG---RQTLLFMTKDFEPIAEKPL  148 (1265)
T ss_pred             EEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeC---CcEEEEEeccccchhcccc
Confidence            3566777888888999999999888765432 12223468999999999999999886   667765432    111111


Q ss_pred             -------------------eecccc---------------------cccEEEEEEcCCCCEEEEc-----ccCCeEEEEe
Q 036585           96 -------------------RYFKGH---------------------HDRVVLLSLCSSKDCFISG-----SLDRTVLLWD  130 (304)
Q Consensus        96 -------------------~~~~~~---------------------~~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd  130 (304)
                                         ..+.+.                     .+.=+++.|.-||+++++.     ...+.|++||
T Consensus       149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d  228 (1265)
T KOG1920|consen  149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD  228 (1265)
T ss_pred             ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence                               111110                     1112358899999998883     2337899999


Q ss_pred             CCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEe---eCCCeEEEEEcCCCce
Q 036585          131 QRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLT---TMEGHIHVLDSFRGTL  207 (304)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~~~d~~~~~~  207 (304)
                      -+ +.....-.                             ...+.-.+++|-|.|..+++-   ..++.|.+|. ++|-.
T Consensus       229 rE-g~Lns~se-----------------------------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~  277 (1265)
T KOG1920|consen  229 RE-GALNSTSE-----------------------------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLR  277 (1265)
T ss_pred             cc-chhhcccC-----------------------------cccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCcc
Confidence            66 33221111                             111234578999999988874   3456799998 45544


Q ss_pred             eEEEEeCCC-CCCcceEEEEcCCCcEEEE---ecCCCcEEEEecCCCc
Q 036585          208 LSTYNVKPV-SRNSTLEASFSPEGMFVIS---GSGDGSVHAWSVRSGK  251 (304)
Q Consensus       208 ~~~~~~~~~-~~~~i~~~~~s~~~~~l~~---~~~dg~i~v~d~~~~~  251 (304)
                      -..+..... ....+..++|+.++..||.   ......|++|-+.+..
T Consensus       278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            444443222 3334899999999999987   4445559999987743

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.87  E-value=1e-05  Score=67.98  Aligned_cols=250  Identities=14%  Similarity=0.102  Sum_probs=145.4

Q ss_pred             EEEeeCCCeEEEEecCCcceeeeeccc-------------ccce---------------eEEEEc-----cCCCeEEEEe
Q 036585           30 LVTASDDESIRLYDVTAATCLKTINSK-------------KYGV---------------DLVCFT-----SHPTTVIYSS   76 (304)
Q Consensus        30 l~~~~~d~~i~vw~~~~~~~~~~~~~~-------------~~~v---------------~~~~~~-----~~~~~l~~~~   76 (304)
                      +.+|+..|.++|+-+.+++.+..+.-.             ...|               +...+|     .||++|+.-.
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find  148 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND  148 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence            668889999999999988877654210             0011               111111     2566666665


Q ss_pred             cCCCCCceEEEEccCceeeeecc---------------cccccEEE-----EEEcCCCCEEEEc-ccCCeEEEEeCCcce
Q 036585           77 KNGWDESLRLLSLHDNKYSRYFK---------------GHHDRVVL-----LSLCSSKDCFISG-SLDRTVLLWDQRAEK  135 (304)
Q Consensus        77 ~~~~d~~i~vwd~~~~~~~~~~~---------------~~~~~v~~-----~~~~~~~~~l~~~-~~dg~i~iwd~~~~~  135 (304)
                      ..  +..|...++...++-+.+.               .+++.|.+     +=+.|||+.+... -..+.+.+.|.++.+
T Consensus       149 k~--n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme  226 (635)
T PRK02888        149 KA--NTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME  226 (635)
T ss_pred             CC--CcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce
Confidence            42  5555555555443322211               12223322     1123455544322 234567778888877


Q ss_pred             eeceEEEeccc-eeEecCCCeEEEecC----CCeEEEEecCCCCCceEEEE--------ecCCcEEEEeeCCCeEEEEEc
Q 036585          136 CQGLLRVQGRP-AAAYDDQGLVFGYEK----GPLDIFSVGGDISDANVVKF--------SNDGRLMLLTTMEGHIHVLDS  202 (304)
Q Consensus       136 ~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~dg~i~~~d~  202 (304)
                      ....+...+.+ ...+++++..+....    ....+..+...... ..+.|        .++|++..++  +++|.+.|.
T Consensus       227 V~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK~~~V~--gn~V~VID~  303 (635)
T PRK02888        227 VAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGKFKTIG--GSKVPVVDG  303 (635)
T ss_pred             EEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEEchHHHHHhhhCCCEEEEC--CCEEEEEEC
Confidence            77776665544 456666765442221    11122222211111 33334        3467766663  578999999


Q ss_pred             CC-----CceeEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecCCCce------------eeeeeccCCCCc
Q 036585          203 FR-----GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVRSGKE------------VASWMSFDTEPP  264 (304)
Q Consensus       203 ~~-----~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~------------~~~~~~~~~~i~  264 (304)
                      ++     .+.+..+.    -......+.++|||+++++++ .+.+|.|+|+.+.+.            ..+..- .....
T Consensus       304 ~t~~~~~~~v~~yIP----VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPL  378 (635)
T PRK02888        304 RKAANAGSALTRYVP----VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPL  378 (635)
T ss_pred             CccccCCcceEEEEE----CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcc
Confidence            88     34555555    445666799999999988765 588999999987552            333332 33445


Q ss_pred             eEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          265 VIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       265 ~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      ..+|.++|....|-.-|  +..|+++.
T Consensus       379 HTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        379 HTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             eEEECCCCCEEEeEeecceeEEEehHH
Confidence            67899999877777777  77888764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.87  E-value=4.6e-06  Score=68.37  Aligned_cols=136  Identities=21%  Similarity=0.290  Sum_probs=90.6

Q ss_pred             EEEecCCCeEEEEecCCCCCceEEEEec-CCcEEEEe----eCCCe----EEEEEcCCCceeEEEEeCCCCCCcceEEEE
Q 036585          156 VFGYEKGPLDIFSVGGDISDANVVKFSN-DGRLMLLT----TMEGH----IHVLDSFRGTLLSTYNVKPVSRNSTLEASF  226 (304)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~dg~----i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~  226 (304)
                      ++....+.+.+...-..+....++.||. +...+.+-    +.+|.    -.+|+....+....-...-.....+.++++
T Consensus       188 L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~  267 (545)
T PF11768_consen  188 LLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCAR  267 (545)
T ss_pred             EEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEec
Confidence            3344444555544444445556677765 33334332    23343    456776655433222222246788999999


Q ss_pred             cCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcccc
Q 036585          227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLG  293 (304)
Q Consensus       227 s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~  293 (304)
                      +|+...++.|+.||+|.+||...+.  ..+....-.++.++|+|+|.++++|+..  +.+||..++.+.
T Consensus       268 sp~E~kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  268 SPSEDKLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             CcccceEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence            9999999999999999999986653  2333455678999999999999999987  889988776553

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.83  E-value=5.6e-07  Score=73.65  Aligned_cols=206  Identities=16%  Similarity=0.179  Sum_probs=126.6

Q ss_pred             EEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCC-CceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585           39 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD-ESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF  117 (304)
Q Consensus        39 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d-~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  117 (304)
                      +.+-|.+ +...+.+......+..-+|+|++..++........ ..+.++++.+++....+. ..+.-...+|+|||+.+
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l  252 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL  252 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence            4444433 44444555555677888999999988777543213 469999999887655444 33344567899999876


Q ss_pred             EEc-ccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-
Q 036585          118 ISG-SLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-  193 (304)
Q Consensus       118 ~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  193 (304)
                      +.+ ..||  .|.++|+..+...+ +.                             ...+.-..-.|+|||++++..+. 
T Consensus       253 ~f~~~rdg~~~iy~~dl~~~~~~~-Lt-----------------------------~~~gi~~~Ps~spdG~~ivf~Sdr  302 (425)
T COG0823         253 AFSSSRDGSPDIYLMDLDGKNLPR-LT-----------------------------NGFGINTSPSWSPDGSKIVFTSDR  302 (425)
T ss_pred             EEEECCCCCccEEEEcCCCCccee-cc-----------------------------cCCccccCccCCCCCCEEEEEeCC
Confidence            654 4555  46677877766332 11                             11112225689999998887654 


Q ss_pred             CC--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC-CCc--EEEEecCCCceeeeeeccCCCCceEEe
Q 036585          194 EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DGS--VHAWSVRSGKEVASWMSFDTEPPVIKW  268 (304)
Q Consensus       194 dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~i~~~~~  268 (304)
                      .|  .|.++|...+.. ..+..   ....-..-.|+|||++++..+. +|.  |.+.|+.++.....+ ........-.|
T Consensus       303 ~G~p~I~~~~~~g~~~-~riT~---~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~  377 (425)
T COG0823         303 GGRPQIYLYDLEGSQV-TRLTF---SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSW  377 (425)
T ss_pred             CCCcceEEECCCCCce-eEeec---cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCc
Confidence            33  477778766655 33332   1222226789999999887764 344  777777666543333 23334445667


Q ss_pred             CCCCcEEEEecCc
Q 036585          269 APGSLMFVTGSSE  281 (304)
Q Consensus       269 ~~~~~~l~s~~~d  281 (304)
                      .|+++.+...+..
T Consensus       378 ~~ng~~i~~~s~~  390 (425)
T COG0823         378 APNGRMIMFSSGQ  390 (425)
T ss_pred             CCCCceEEEeccC
Confidence            7888776655443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.83  E-value=1.8e-05  Score=65.12  Aligned_cols=226  Identities=15%  Similarity=0.133  Sum_probs=119.1

Q ss_pred             eeEeecccCcEEEEeeCC----------C-eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           19 EILQSMEVGIYLVTASDD----------E-SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d----------~-~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ..++..+.|..+|....+          . .|+||+.. |+++.++.-..+.+.++.|+.+...++.. .   ||.+++|
T Consensus        32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~-~---dG~v~vy  106 (410)
T PF04841_consen   32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQ-S---DGTVRVY  106 (410)
T ss_pred             eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEE-c---CCEEEEE
Confidence            345666666666666443          1 58999854 77777766555799999999866555554 4   9999999


Q ss_pred             EccCceeeeec-------ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce-eeceEEEeccceeEecCCCeEEEe
Q 036585           88 SLHDNKYSRYF-------KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQGLVFGY  159 (304)
Q Consensus        88 d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  159 (304)
                      |+.... ...+       .-....+....+..+|-.+++  .++.+.+.+--... ....+.  ..+.....        
T Consensus       107 ~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~--~~p~~~~~--------  173 (410)
T PF04841_consen  107 DLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLP--EIPGLWTK--------  173 (410)
T ss_pred             eCCCce-eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccc--cCCCcccc--------
Confidence            986433 1111       111122223334445533333  33444443221111 111110  00000000        


Q ss_pred             cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585          160 EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD  239 (304)
Q Consensus       160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  239 (304)
                               ............++.+....+....++.+.+.+-...+.   +    ...+++..++.||+++++|.-..+
T Consensus       174 ---------~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i----~~~~~i~~iavSpng~~iAl~t~~  237 (410)
T PF04841_consen  174 ---------FHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I----DSDGPIIKIAVSPNGKFIALFTDS  237 (410)
T ss_pred             ---------cccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c----cCCCCeEEEEECCCCCEEEEEECC
Confidence                     000000000133444555555555556666554322211   1    234678889999999999888888


Q ss_pred             CcEEEEecCCCceeeeeecc-CCCCceEEeCCCCcEEEEe
Q 036585          240 GSVHAWSVRSGKEVASWMSF-DTEPPVIKWAPGSLMFVTG  278 (304)
Q Consensus       240 g~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~  278 (304)
                      |.+.+.+..-.+.+.++... ......+.|..+...++.-
T Consensus       238 g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~  277 (410)
T PF04841_consen  238 GNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW  277 (410)
T ss_pred             CCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe
Confidence            88888876545555555333 3456777777665444433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.83  E-value=1.2e-05  Score=60.67  Aligned_cols=206  Identities=10%  Similarity=0.082  Sum_probs=113.1

Q ss_pred             eecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccc-cccEEEEEEcCCCCEEEEcccCCeEEEEe
Q 036585           52 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH-HDRVVLLSLCSSKDCFISGSLDRTVLLWD  130 (304)
Q Consensus        52 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  130 (304)
                      .+.+-...+..++|+|+.+.|++....  .+.|..++.. |+.++.+.-. .+....+++..++.++++.-.++.+.+++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~--~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDE--PGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETT--TTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECC--CCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            344545569999999998888777754  7777777764 6666665422 35678899988887777777789999998


Q ss_pred             CCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC---Cce
Q 036585          131 QRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---GTL  207 (304)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---~~~  207 (304)
                      +...........  .....                +-....+...+..++|+|.++.|+++-...-..+|.++.   ...
T Consensus        93 ~~~~~~~~~~~~--~~~~~----------------l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~  154 (248)
T PF06977_consen   93 IDDDTTSLDRAD--VQKIS----------------LGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD  154 (248)
T ss_dssp             E----TT--EEE--EEEEE-------------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred             Eeccccccchhh--ceEEe----------------cccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence            854322111100  00000                000012445688999999888788877766666776653   222


Q ss_pred             eEEEEe-----CCCCCCcceEEEEcCC-CcEEEEecCCCcEEEEecCCCceeeeeeccC---------CCCceEEeCCCC
Q 036585          208 LSTYNV-----KPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGKEVASWMSFD---------TEPPVIKWAPGS  272 (304)
Q Consensus       208 ~~~~~~-----~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~  272 (304)
                      ......     .......+.+++++|. +.+++.......|..+| .+|+.+..+.-..         ...-.|+|.++|
T Consensus       155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G  233 (248)
T PF06977_consen  155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG  233 (248)
T ss_dssp             -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred             eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence            221110     1123345778999995 56677777888899999 6777766553222         245789999999


Q ss_pred             cEEEEec
Q 036585          273 LMFVTGS  279 (304)
Q Consensus       273 ~~l~s~~  279 (304)
                      ++.++.=
T Consensus       234 ~LYIvsE  240 (248)
T PF06977_consen  234 NLYIVSE  240 (248)
T ss_dssp             -EEEEET
T ss_pred             CEEEEcC
Confidence            7666553

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=1.2e-06  Score=73.96  Aligned_cols=177  Identities=14%  Similarity=0.168  Sum_probs=123.8

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEE
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV  106 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  106 (304)
                      ++.|+.|+.+|.|++.+.+ +.+ .+...|...      ..+|.++++++.   ||+|.|-.+-+.+...++. ...++.
T Consensus        49 ~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~---DGkv~I~sl~~~~~~~~~d-f~rpik  116 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSD---DGKVVIGSLFTDDEITQYD-FKRPIK  116 (846)
T ss_pred             cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecC---CCcEEEeeccCCccceeEe-cCCcce
Confidence            7899999999999999976 333 333344432      568999999999   9999999998888776665 557899


Q ss_pred             EEEEcCC-----CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEE
Q 036585          107 LLSLCSS-----KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF  181 (304)
Q Consensus       107 ~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  181 (304)
                      +++++|+     .+.+++|+..| +.++.-+=.......                           .+....++|.++.|
T Consensus       117 sial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v---------------------------~l~~~eG~I~~i~W  168 (846)
T KOG2066|consen  117 SIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV---------------------------VLSEGEGPIHSIKW  168 (846)
T ss_pred             eEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce---------------------------eeecCccceEEEEe
Confidence            9999997     56899999888 666542211111111                           11134578999999


Q ss_pred             ecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC---CCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          182 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---SRNSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       182 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                        .|.++|-++.+| |++||+.+++.+..++.+..   .......+.|.++.+ |+.| ...+|+|..++
T Consensus       169 --~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  169 --RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK  233 (846)
T ss_pred             --cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence              588888888776 79999998887777663221   111233577876654 4444 44468888887

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.80  E-value=1.3e-05  Score=64.89  Aligned_cols=257  Identities=15%  Similarity=0.167  Sum_probs=137.8

Q ss_pred             cccCcEEEEee---------CCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           24 MEVGIYLVTAS---------DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        24 ~~~~~~l~~~~---------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      +||+++++...         ..+.+.++|+++++....... ...+....|+|+|+.++...    ++.|.+++..+++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~----~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR----DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE----TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe----cCceEEEECCCCCe
Confidence            46777776632         245688999998765544333 56788999999999999998    88999999877754


Q ss_pred             eeecc-c-------c---------cccEEEEEEcCCCCEEEEcccC-CeEEEEeC---Ccce----eeceEEEe--ccce
Q 036585           95 SRYFK-G-------H---------HDRVVLLSLCSSKDCFISGSLD-RTVLLWDQ---RAEK----CQGLLRVQ--GRPA  147 (304)
Q Consensus        95 ~~~~~-~-------~---------~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~---~~~~----~~~~~~~~--~~~~  147 (304)
                      .+.-. +       -         -+.-..+-|+||+++|+....| ..|+.+.+   ....    ....++-+  +...
T Consensus        76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n  155 (353)
T PF00930_consen   76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN  155 (353)
T ss_dssp             EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred             EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence            43211 1       0         1122568899999998886543 33443332   2111    11111111  1110


Q ss_pred             eEecCCC--eEEEecCCCeEEEEe----cCCCCCceEEEEecCCcEEEEee--CC---CeEEEEEcCCCceeEEEEeC-C
Q 036585          148 AAYDDQG--LVFGYEKGPLDIFSV----GGDISDANVVKFSNDGRLMLLTT--ME---GHIHVLDSFRGTLLSTYNVK-P  215 (304)
Q Consensus       148 ~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~--~d---g~i~~~d~~~~~~~~~~~~~-~  215 (304)
                          +.-  .++....+.......    ......+..+.|.++++.|++.-  .+   ..+.++|..+++........ .
T Consensus       156 ----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~  231 (353)
T PF00930_consen  156 ----PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD  231 (353)
T ss_dssp             -----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred             ----CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence                111  111222222222221    23445677899999998454432  22   25777888777655444321 1


Q ss_pred             CCCCcceEEEEc-CCC-cEEEEecCCCc--EEEEecCCCceeeeeeccCCCCce-EEeCCCCcEE-EEecCc----eEEe
Q 036585          216 VSRNSTLEASFS-PEG-MFVISGSGDGS--VHAWSVRSGKEVASWMSFDTEPPV-IKWAPGSLMF-VTGSSE----LSFW  285 (304)
Q Consensus       216 ~~~~~i~~~~~s-~~~-~~l~~~~~dg~--i~v~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l-~s~~~d----~~iw  285 (304)
                      .--..-....|. +++ .+|.....+|.  |.+++...+. ...+....-.|.. +.|+++++.+ +++..+    -.||
T Consensus       232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY  310 (353)
T PF00930_consen  232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLY  310 (353)
T ss_dssp             SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEE
T ss_pred             cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEE
Confidence            111222345554 554 45555556775  5555654444 4455555566754 6688876644 455543    6777


Q ss_pred             ccCCc
Q 036585          286 IPDLS  290 (304)
Q Consensus       286 ~~~~~  290 (304)
                      ..+..
T Consensus       311 ~v~~~  315 (353)
T PF00930_consen  311 RVSLD  315 (353)
T ss_dssp             EEETT
T ss_pred             EEEeC
Confidence            66555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.80  E-value=2.4e-07  Score=79.14  Aligned_cols=179  Identities=16%  Similarity=0.189  Sum_probs=129.3

Q ss_pred             CCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccce
Q 036585           68 HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA  147 (304)
Q Consensus        68 ~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  147 (304)
                      ++..++.|+-   ...+..+|+++.+..+...-....|.-+..  +++++.+|...|+|.+-|.++.+.+..+.      
T Consensus       146 ~~~~~i~Gg~---Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------  214 (1118)
T KOG1275|consen  146 GPSTLIMGGL---QEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD------  214 (1118)
T ss_pred             CCcceeecch---hhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee------
Confidence            3455666665   677888899888777666544445555544  67899999999999999999988887776      


Q ss_pred             eEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC---------CCeEEEEEcCCCceeEEEEeCCCCC
Q 036585          148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM---------EGHIHVLDSFRGTLLSTYNVKPVSR  218 (304)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~~~d~~~~~~~~~~~~~~~~~  218 (304)
                                             .|.+.+..  |+-.|+.|++++.         |..|+|||++..+.+..+..   +.
T Consensus       215 -----------------------aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~  266 (1118)
T KOG1275|consen  215 -----------------------AHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PY  266 (1118)
T ss_pred             -----------------------ccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---cc
Confidence                                   45555554  4447888888764         45689999999887777663   33


Q ss_pred             CcceEEEEcCC-CcEEEEecCCCcEEEEecC---CCce-eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585          219 NSTLEASFSPE-GMFVISGSGDGSVHAWSVR---SGKE-VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       219 ~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~---~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      ++ .-+.|.|. ...+++++..|...+-|..   +... +..+..-...+..+.+++++..++.+..+  +.+|.
T Consensus       267 ~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  267 GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             Cc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            33 44788884 4567888889999999943   3211 23333344558999999999999999888  88886

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.79  E-value=1.9e-05  Score=58.35  Aligned_cols=177  Identities=14%  Similarity=0.082  Sum_probs=110.9

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEE
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV  106 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  106 (304)
                      ..+++.|+..+.+.--|.++|+.+-+-.-. ..+.+-+.- -|++++.|+.   .|.+++.+..+|+....+.....--.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy---~g~lYfl~~~tGs~~w~f~~~~~vk~   97 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCY---SGGLYFLCVKTGSQIWNFVILETVKV   97 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEc---cCcEEEEEecchhheeeeeehhhhcc
Confidence            568889999999999999999876443211 123322222 4778999998   99999999999987777664333223


Q ss_pred             EEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccce--eEecC-CC-eEEEecCCCeEEEEecCC----------
Q 036585          107 LLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA--AAYDD-QG-LVFGYEKGPLDIFSVGGD----------  172 (304)
Q Consensus       107 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~----------  172 (304)
                      .....+++..+..++.|++.+..|.++..++...+..+...  .++++ ++ .++....+.+...+....          
T Consensus        98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~  177 (354)
T KOG4649|consen   98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATR  177 (354)
T ss_pred             ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhc
Confidence            34566789999999999999999999998887766554432  12233 22 233333333222221111          


Q ss_pred             CCCceEEEEec--CCcEEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585          173 ISDANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYN  212 (304)
Q Consensus       173 ~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  212 (304)
                      ..++..   +|  -+..+..++.||.+.-+| ..|+.+.++.
T Consensus       178 ~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~  215 (354)
T KOG4649|consen  178 FGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPA  215 (354)
T ss_pred             CCcccc---CceeccceEEEEEeccEEEEEc-CCCcEEEeec
Confidence            111110   11  134566667788887777 6666666554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.75  E-value=1.9e-06  Score=70.62  Aligned_cols=181  Identities=17%  Similarity=0.172  Sum_probs=111.4

Q ss_pred             eecccCcEEEEee---CC-CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           22 QSMEVGIYLVTAS---DD-ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        22 ~~~~~~~~l~~~~---~d-~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      .+++++..++..+   .. ..+.++++++++....+. ..+.-...+|+|||+.|+........-.|+++|+.+++..+ 
T Consensus       199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-  276 (425)
T COG0823         199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-  276 (425)
T ss_pred             ccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-
Confidence            5677776655442   22 468899998877655544 22234457899999999988875334456667887776433 


Q ss_pred             cccccccEEEEEEcCCCCEEEEccc-CC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSL-DR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS  174 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (304)
                      +..-.+.-..-.|+|+|+.++..+. .|  .|.++|.+.....+... .                             ..
T Consensus       277 Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~-----------------------------~~  326 (425)
T COG0823         277 LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-S-----------------------------GG  326 (425)
T ss_pred             cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-c-----------------------------CC
Confidence            4433333346789999998776653 34  46666666554422211 1                             11


Q ss_pred             CceEEEEecCCcEEEEeeC-CCe--EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC
Q 036585          175 DANVVKFSNDGRLMLLTTM-EGH--IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG  238 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  238 (304)
                      .-..-.|+|||++++..+. +|.  |.+.|+.++.....+.    .......-.|.|+++.+...+.
T Consensus       327 ~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt----~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         327 GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT----STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc----ccccCCCCCcCCCCceEEEecc
Confidence            1125789999999888764 344  7777776666444333    2333344678888888765543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.68  E-value=7.8e-05  Score=58.16  Aligned_cols=253  Identities=13%  Similarity=0.132  Sum_probs=154.4

Q ss_pred             CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecC-------CCCCceEEEEccCceeeeecccccc------
Q 036585           37 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDNKYSRYFKGHHD------  103 (304)
Q Consensus        37 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------~~d~~i~vwd~~~~~~~~~~~~~~~------  103 (304)
                      +.+.|+|.++++.+-.+...  -...+..+|+++.++++..-       ...-.|.+||..+-++...+.-...      
T Consensus        17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            47999999998887776643  34447789999999876420       0144689999998766554331111      


Q ss_pred             -cEEEEEEcCCCCEEEEc--ccCCeEEEEeCCcceeeceEEEeccce-eEecCCCeEEEecCCCeEEEEecCCCCC----
Q 036585          104 -RVVLLSLCSSKDCFISG--SLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDDQGLVFGYEKGPLDIFSVGGDISD----  175 (304)
Q Consensus       104 -~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  175 (304)
                       ....+.++.++++++..  +--..|.+.|+..++.+..+..++... ....+.++...+.+|.+....+......    
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence             12335778888877764  344578899999988887776655443 2334455666667777766666532111    


Q ss_pred             -----------ceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeE--EEEeCCC-------CCCcceEEEEcCCCcEEEE
Q 036585          176 -----------ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS--TYNVKPV-------SRNSTLEASFSPEGMFVIS  235 (304)
Q Consensus       176 -----------v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~-------~~~~i~~~~~s~~~~~l~~  235 (304)
                                 ...-++...+..++.-+.+|.|+-.|+.......  .+.....       ..+.-.-+++++..+.|+.
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence                       1222333444456667889999998887654322  2221100       0122334788876666655


Q ss_pred             ec---CCC-------cEEEEecCCCceeeeeeccCCCCceEEeCCCCc-EEEEec-Cc--eEEeccCCccc
Q 036585          236 GS---GDG-------SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL-MFVTGS-SE--LSFWIPDLSKL  292 (304)
Q Consensus       236 ~~---~dg-------~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-~d--~~iw~~~~~~~  292 (304)
                      -.   .++       .|.++|+++++.+.++.. ..++.+|..+.+.+ +|++.+ .+  +.+||....++
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence            42   122       488999999999998863 34678999998765 665443 33  88898866543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.67  E-value=6.3e-06  Score=67.83  Aligned_cols=177  Identities=11%  Similarity=0.085  Sum_probs=97.9

Q ss_pred             cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce
Q 036585           56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK  135 (304)
Q Consensus        56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  135 (304)
                      ....+..+.++|+++.+++++    ||...++.....+..     ..+.-..+.|.+++ .+++-.....|.++.--+..
T Consensus        31 ~~~~p~~ls~npngr~v~V~g----~geY~iyt~~~~r~k-----~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCG----DGEYEIYTALAWRNK-----AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEE----TTEEEEEETTTTEEE-----EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred             CCcCCeeEEECCCCCEEEEEc----CCEEEEEEccCCccc-----ccCceeEEEEecCc-cEEEEECCCeEEEEEcCccc
Confidence            344578999999999999976    889989884333221     23445668888855 56666668889996322222


Q ss_pred             eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC
Q 036585          136 CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP  215 (304)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  215 (304)
                      ....+..+                              ..+..+-.   |..|...+.+ .|.+||+.+++.+.++.   
T Consensus       101 ~~k~i~~~------------------------------~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~---  143 (443)
T PF04053_consen  101 VVKSIKLP------------------------------FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID---  143 (443)
T ss_dssp             TT-----S------------------------------S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES---
T ss_pred             cceEEcCC------------------------------cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe---
Confidence            22233221                              11222222   7777776555 89999999999999886   


Q ss_pred             CCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC-----------ceeeeeeccCCCCceEEeCCCCcEEEEecCceE
Q 036585          216 VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG-----------KEVASWMSFDTEPPVIKWAPGSLMFVTGSSELS  283 (304)
Q Consensus       216 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~  283 (304)
                       . .+|..+.|++++.+++..+.+ .+.|++....           ..+..+......|.+.+|..+ -+++|....++
T Consensus       144 -v-~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~~lk  218 (443)
T PF04053_consen  144 -V-SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSNHLK  218 (443)
T ss_dssp             -S--E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TTEEE
T ss_pred             -c-CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCCeEE
Confidence             2 248899999999999999755 5888775322           033334333567888888776 44444443333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.67  E-value=9e-05  Score=60.10  Aligned_cols=233  Identities=13%  Similarity=0.136  Sum_probs=121.3

Q ss_pred             cceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeec-c---------------c-ccceeEEEEccCCCeEEEEecC
Q 036585           16 LSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN-S---------------K-KYGVDLVCFTSHPTTVIYSSKN   78 (304)
Q Consensus        16 ~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~---------------~-~~~v~~~~~~~~~~~l~~~~~~   78 (304)
                      .......++|+|+.+|... ++.|.+++..+++..+.-. +               . -+.-..+-||||+++|+....+
T Consensus        43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            3455688999999999886 4689999987764433211 1               0 1123578899999999988763


Q ss_pred             CCCCceEEE-----------------------------------EccCceeeee--c---ccccccEEEEEEcCCCCEEE
Q 036585           79 GWDESLRLL-----------------------------------SLHDNKYSRY--F---KGHHDRVVLLSLCSSKDCFI  118 (304)
Q Consensus        79 ~~d~~i~vw-----------------------------------d~~~~~~~~~--~---~~~~~~v~~~~~~~~~~~l~  118 (304)
                        +..|..+                                   |+.+++....  .   ..-...+..+.|.++++.|+
T Consensus       122 --~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  122 --EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             ---TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             --CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence              3444333                                   3333322110  0   11233566677777766333


Q ss_pred             Eccc-----CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEe-cCC-cEEEEe
Q 036585          119 SGSL-----DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS-NDG-RLMLLT  191 (304)
Q Consensus       119 ~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~~l~~~  191 (304)
                      ..-.     ...+.+.|..++...........                         +--..-....+. +++ .++...
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~-------------------------~Wv~~~~~~~~~~~~~~~~l~~s  254 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSD-------------------------GWVDVYDPPHFLGPDGNEFLWIS  254 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEESS-------------------------SSSSSSSEEEE-TTTSSEEEEEE
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEecCC-------------------------cceeeecccccccCCCCEEEEEE
Confidence            3221     12344555555443332221111                         011122345554 554 445555


Q ss_pred             eCCC--eEEEEEcCCCceeEEEEeCCCCCCcce-EEEEcCCCcEEE-EecCC----CcEEEEecCCCceeeeeeccCCCC
Q 036585          192 TMEG--HIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMFVI-SGSGD----GSVHAWSVRSGKEVASWMSFDTEP  263 (304)
Q Consensus       192 ~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~-~~~~d----g~i~v~d~~~~~~~~~~~~~~~~i  263 (304)
                      ..+|  .|.+++...+... .+.   ...-.|. -+.++++++.|+ ++..+    ..|+.-++..+..+..+....+.-
T Consensus       255 ~~~G~~hly~~~~~~~~~~-~lT---~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~  330 (353)
T PF00930_consen  255 ERDGYRHLYLYDLDGGKPR-QLT---SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH  330 (353)
T ss_dssp             ETTSSEEEEEEETTSSEEE-ESS----SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT
T ss_pred             EcCCCcEEEEEccccccee-ccc---cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc
Confidence            5666  4666666655533 222   2445564 377888876554 55442    346666666234455565443333


Q ss_pred             ceEEeCCCCcEEEEecC
Q 036585          264 PVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       264 ~~~~~~~~~~~l~s~~~  280 (304)
                      ..+.|||++++++-...
T Consensus       331 ~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  331 YSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             EEEEE-TTSSEEEEEEE
T ss_pred             eEEEECCCCCEEEEEEc
Confidence            59999999998875543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.63  E-value=2.8e-05  Score=63.97  Aligned_cols=72  Identities=19%  Similarity=0.297  Sum_probs=61.8

Q ss_pred             CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          172 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                      ..+.+.+.+++|+...++.|+.||.|.+||...+..... +    ..-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K----AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e----ecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            557899999999999999999999999999876643322 2    44567889999999999999999999999985

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=0.00012  Score=59.80  Aligned_cols=224  Identities=15%  Similarity=0.121  Sum_probs=150.7

Q ss_pred             eeEeecccCc-EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           19 EILQSMEVGI-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        19 ~~i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ..+...+.++ .+++...+..|.+.|..+.+......... ....++++|+++.+.++.....++.+.+.|..+++....
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            3455666666 45555556889999988777776655433 677899999999988887631268999999998887777


Q ss_pred             cccccccEEEEEEcCCCCEEEEcc-cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA  176 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  176 (304)
                      ...-..+ ..+++.|+++.++... .++.+.+.|........ -. .....                       ......
T Consensus       156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-~~~~~-----------------------~~~~~P  209 (381)
T COG3391         156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-VGSLV-----------------------GVGTGP  209 (381)
T ss_pred             EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc-ccccc-----------------------ccCCCC
Confidence            4433334 8899999999666554 78899999966554432 10 00000                       111234


Q ss_pred             eEEEEecCCcEEEEeeCC---CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecCCCce
Q 036585          177 NVVKFSNDGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVRSGKE  252 (304)
Q Consensus       177 ~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~  252 (304)
                      ..+.++|+|+++.+....   +.+...|..++.....-... ... ....+.++|+|+++++.. ..+.+.+.|..+...
T Consensus       210 ~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         210 AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence            568899999977776544   58999999888776652211 122 455689999999998884 447899999988777


Q ss_pred             eeeeeccC---CCCceEEeCCC
Q 036585          253 VASWMSFD---TEPPVIKWAPG  271 (304)
Q Consensus       253 ~~~~~~~~---~~i~~~~~~~~  271 (304)
                      ........   ..+..+++.+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         288 VKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             eeeecccccccccceeccceee
Confidence            66553322   23455555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.60  E-value=6e-05  Score=62.20  Aligned_cols=224  Identities=15%  Similarity=0.120  Sum_probs=119.4

Q ss_pred             eeeeecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585           11 KVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   90 (304)
Q Consensus        11 ~~~~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~   90 (304)
                      .......+..+..+|+|++++++ .||...|+.....+...     .+.....+|.+.+ .+++-..   ...|.++.--
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~---~~~I~I~kn~   97 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLES---SSTIKIYKNF   97 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-T---TS-EEEEETT
T ss_pred             CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEEC---CCeEEEEEcC
Confidence            33444456778999999999995 56788888744333322     2345668899844 4666655   7889996433


Q ss_pred             CceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           91 DNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      +.+....++. ...+..+-.   |.+|...+. +.|.+||+.+++.+..+..                            
T Consensus        98 ~~~~~k~i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v----------------------------  144 (443)
T PF04053_consen   98 KNEVVKSIKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV----------------------------  144 (443)
T ss_dssp             EE-TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS----------------------------
T ss_pred             ccccceEEcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec----------------------------
Confidence            3333333432 123343333   776666655 4899999999988777642                            


Q ss_pred             CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-----------ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585          171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-----------TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD  239 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  239 (304)
                         .+|..+.|+++|++++..+.+ .+.+++....           .......   .....|.+.+|..+ -++++.. .
T Consensus       145 ---~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~---E~~~~IkSg~W~~d-~fiYtT~-~  215 (443)
T PF04053_consen  145 ---SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIH---EISERIKSGCWVED-CFIYTTS-N  215 (443)
T ss_dssp             ----E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE---EE-S--SEEEEETT-EEEEE-T-T
T ss_pred             ---CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEE---EecceeEEEEEEcC-EEEEEcC-C
Confidence               247889999999999988766 6677664332           0222222   12567888999776 4455543 3


Q ss_pred             CcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          240 GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       240 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                       .++-  +-+|+. ..+..-..++.=+...|..+.+.....+  +..+.++..
T Consensus       216 -~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  216 -HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             -EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             -eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence             6665  444442 3343345677777888877778877777  555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.56  E-value=6.7e-05  Score=63.54  Aligned_cols=200  Identities=17%  Similarity=0.191  Sum_probs=116.3

Q ss_pred             cEEEEeeCCCeEEEEecCCcceeeeecccccc-----ee-EEEEccCCCeEEEEecC------CCCCceEEEEccCceee
Q 036585           28 IYLVTASDDESIRLYDVTAATCLKTINSKKYG-----VD-LVCFTSHPTTVIYSSKN------GWDESLRLLSLHDNKYS   95 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~l~~~~~~------~~d~~i~vwd~~~~~~~   95 (304)
                      ..++.++.++.|.-+|.++++.+-+.......     +. ...+  .+..++.++..      +.++.+.-+|..+++.+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            67888888999999999999988766543221     11 1122  23455555421      12678899999999877


Q ss_pred             eecccccc--------------------cE-EEEEEcCCCCEEEEcccCC------------------eEEEEeCCccee
Q 036585           96 RYFKGHHD--------------------RV-VLLSLCSSKDCFISGSLDR------------------TVLLWDQRAEKC  136 (304)
Q Consensus        96 ~~~~~~~~--------------------~v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~  136 (304)
                      -.+.....                    .+ ....+.+.+..++.++.++                  .+.-+|.++++.
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            66543211                    01 1233444456677776554                  677788888877


Q ss_pred             eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC-ceEEEEecCCc---EEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585          137 QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD-ANVVKFSNDGR---LMLLTTMEGHIHVLDSFRGTLLSTYN  212 (304)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~  212 (304)
                      ...+.......                   |.+.....+ +..+. .-++.   .+++++.+|.+..+|.++|+.+....
T Consensus       269 ~W~~~~~~~~~-------------------~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         269 KWFYQTTPHDL-------------------WDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             EEEeeCCCCCC-------------------cccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence            76654321110                   000000000 00010 01232   57788899999999999999988776


Q ss_pred             eCCCCCCcceEEEEcCCCcEEEEe------------------cCCCcEEEEecCCCceeeeee
Q 036585          213 VKPVSRNSTLEASFSPEGMFVISG------------------SGDGSVHAWSVRSGKEVASWM  257 (304)
Q Consensus       213 ~~~~~~~~i~~~~~s~~~~~l~~~------------------~~dg~i~v~d~~~~~~~~~~~  257 (304)
                      ..      ...++.+|  ..++.+                  ..+|.+.-.|+.+++.+-+..
T Consensus       329 ~~------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~  383 (488)
T cd00216         329 EV------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR  383 (488)
T ss_pred             ee------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence            31      11133444  233332                  246788889999998766654

The alignment model contains an 8-bladed beta-propeller.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=0.00026  Score=57.94  Aligned_cols=241  Identities=13%  Similarity=0.121  Sum_probs=151.4

Q ss_pred             eeeEeecccCcEEE-EeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           18 EEILQSMEVGIYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        18 ~~~i~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ...+...+++..+. +-.....+...+...................++.++.++.++.....  ++.|.+.|..+.+...
T Consensus        33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~--~~~v~vid~~~~~~~~  110 (381)
T COG3391          33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGD--SNTVSVIDTATNTVLG  110 (381)
T ss_pred             CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCC--CCeEEEEcCcccceee
Confidence            33455556664333 33232345555544222222222221345578889999877766653  7899999987776665


Q ss_pred             ecccccccEEEEEEcCCCCEEEEccc---CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSL---DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI  173 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                      ...- ......+++.|+++.++.+..   ++++.+.|..+.+.........                             
T Consensus       111 ~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-----------------------------  160 (381)
T COG3391         111 SIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-----------------------------  160 (381)
T ss_pred             Eeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-----------------------------
Confidence            5542 225678999999987776654   6888888888777766533211                             


Q ss_pred             CCceEEEEecCCcEEEEee-CCCeEEEEEcCCCceeE-EEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEecC
Q 036585          174 SDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLS-TYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSVR  248 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~  248 (304)
                      .+ ..++++|+|+.+++.. .++.|.++|........ .-............+.++|+|++++.....   +.+...|..
T Consensus       161 ~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~  239 (381)
T COG3391         161 TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA  239 (381)
T ss_pred             Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC
Confidence            12 6799999999776665 78899999977665553 100001123344568999999977766443   589999998


Q ss_pred             CCceeeeeeccCC-CCceEEeCCCCcEEEEecCc---eEEeccCCcc
Q 036585          249 SGKEVASWMSFDT-EPPVIKWAPGSLMFVTGSSE---LSFWIPDLSK  291 (304)
Q Consensus       249 ~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~d---~~iw~~~~~~  291 (304)
                      ++.....-..-.. ....+..+|+|..+.+....   +.+-+.....
T Consensus       240 ~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         240 TGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             CceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence            8877655211111 56778999999988887554   5555544433

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.56  E-value=1.8e-06  Score=71.88  Aligned_cols=204  Identities=12%  Similarity=0.134  Sum_probs=125.2

Q ss_pred             cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcc
Q 036585           56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAE  134 (304)
Q Consensus        56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  134 (304)
                      +...+.--++...+++++.|++   -|.+++|+-..++....-. +-.+.+..+..+++..++|.|+..|.|.++-+...
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS---~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~  108 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSS---AGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE  108 (726)
T ss_pred             CcceEEEEEeecCCceEEEecc---cceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence            3345666677889999999999   9999999988776433222 23455666778888888999999999999987764


Q ss_pred             eeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-ceeEEEEe
Q 036585          135 KCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNV  213 (304)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~  213 (304)
                      ......-....                       -..|...|++++|++++..+++|...|+|.+-.+.+. ......+.
T Consensus       109 ~p~~~~~~t~~-----------------------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~  165 (726)
T KOG3621|consen  109 LPRDLDYVTPC-----------------------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQE  165 (726)
T ss_pred             CCCcceeeccc-----------------------cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccce
Confidence            33222111000                       0126788999999999999999999999999888762 11111111


Q ss_pred             CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee-e-ccCC-CCceEEeCCC-----CcEEEEecCceEEe
Q 036585          214 KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW-M-SFDT-EPPVIKWAPG-----SLMFVTGSSELSFW  285 (304)
Q Consensus       214 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~-~~~~-~i~~~~~~~~-----~~~l~s~~~d~~iw  285 (304)
                      .......|..+.+. ++ +|+.++--. -.+++++..+. ..+ + ...+ .-...+|-|.     ...|+++--..|+|
T Consensus       166 il~~ds~IVQlD~~-q~-~LLVStl~r-~~Lc~tE~eti-~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlW  241 (726)
T KOG3621|consen  166 ILSEDSEIVQLDYL-QS-YLLVSTLTR-CILCQTEAETI-TQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLW  241 (726)
T ss_pred             eeccCcceEEeecc-cc-eehHhhhhh-hheeecchhHH-HHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceE
Confidence            11245666666553 33 444333332 33455543321 111 1 1111 1234455553     34666666669999


Q ss_pred             ccCC
Q 036585          286 IPDL  289 (304)
Q Consensus       286 ~~~~  289 (304)
                      ..+.
T Consensus       242 ead~  245 (726)
T KOG3621|consen  242 EADF  245 (726)
T ss_pred             Eeec
Confidence            7654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=7.8e-06  Score=63.78  Aligned_cols=218  Identities=11%  Similarity=0.141  Sum_probs=123.7

Q ss_pred             EeecccCc-EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee-eeec
Q 036585           21 LQSMEVGI-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-SRYF   98 (304)
Q Consensus        21 i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~-~~~~   98 (304)
                      +.++|..+ ++..++.+..|+|.|+++...+..+..+ ..+.+.+|.-+....+.++..  +|.|.+||++..+. +..+
T Consensus       199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~--nG~VlvyD~R~~~~~~~e~  275 (463)
T KOG1645|consen  199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQ--NGMVLVYDMRQPEGPLMEL  275 (463)
T ss_pred             hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEecc--CceEEEEEccCCCchHhhh
Confidence            56777766 7888999999999999999999988888 589999999988877777654  99999999987542 2222


Q ss_pred             cc--ccccEEEEEEcC------CCCEEEEcccCCeEEEEeCCcce--eeceEEE--eccc-eeEecC--CCeEEEecC--
Q 036585           99 KG--HHDRVVLLSLCS------SKDCFISGSLDRTVLLWDQRAEK--CQGLLRV--QGRP-AAAYDD--QGLVFGYEK--  161 (304)
Q Consensus        99 ~~--~~~~v~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~--~~~~-~~~~~~--~~~~~~~~~--  161 (304)
                      .+  ...+|..++.-+      .+.+++..+.+  +..|++.-..  .....+.  ++.. .+.+++  +..++.+..  
T Consensus       276 ~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~p  353 (463)
T KOG1645|consen  276 VANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNP  353 (463)
T ss_pred             hhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCC
Confidence            22  223455444332      23344443332  4455543211  1111111  1111 111111  111221111  


Q ss_pred             ---------------CCeEEEEec-CC-CC------CceEEEEecCCcEEE-EeeCCCeEEEEEcCCCceeEEEEeCCCC
Q 036585          162 ---------------GPLDIFSVG-GD-IS------DANVVKFSNDGRLML-LTTMEGHIHVLDSFRGTLLSTYNVKPVS  217 (304)
Q Consensus       162 ---------------~~~~~~~~~-~~-~~------~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~  217 (304)
                                     ....++..+ .+ .+      .-..+.-.++.++++ ++.....+.+||..+.+...++.    .
T Consensus       354 n~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~----~  429 (463)
T KOG1645|consen  354 NFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA----L  429 (463)
T ss_pred             CCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecc----c
Confidence                           111222211 11 00      011122234445444 35566789999999999999988    4


Q ss_pred             CCcceEEEEcC-C-CcEEEEecCCCcEEEEecC
Q 036585          218 RNSTLEASFSP-E-GMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       218 ~~~i~~~~~s~-~-~~~l~~~~~dg~i~v~d~~  248 (304)
                      ..++..++... + +.+|++-. |..++||..+
T Consensus       430 ~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  430 SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence            47777776554 3 34666554 5668888643

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.53  E-value=0.00022  Score=55.93  Aligned_cols=219  Identities=13%  Similarity=0.047  Sum_probs=124.2

Q ss_pred             ecccCc-EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc-
Q 036585           23 SMEVGI-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG-  100 (304)
Q Consensus        23 ~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~-  100 (304)
                      +.++.. ++.+--..+.|.-|+..+++.. .+..+ ..+.++..-..+..|+++     +..+.+++.+++.....+.. 
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d~~g~Lv~~-----~~g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALIDAGGRLIAC-----EHGVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeecCCCeEEEE-----ccccEEEeccCCceeEEeccc
Confidence            444444 5555566778888888765432 22222 234444444445455555     44667777765554222211 


Q ss_pred             ----ccccEEEEEEcCCCCEEEEcccC-----------CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585          101 ----HHDRVVLLSLCSSKDCFISGSLD-----------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus       101 ----~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                          .......+...|+|.+.++....           |.++.+|. .+.....                          
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l--------------------------  157 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRL--------------------------  157 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEe--------------------------
Confidence                11244567777887655543321           11222221 1111111                          


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCC--CceeE--EEEeCCCCCCcceEEEEcCCCcEEEEecCCC
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFR--GTLLS--TYNVKPVSRNSTLEASFSPEGMFVISGSGDG  240 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~--~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  240 (304)
                         +..+-..-+.|+||||++.|+.+.. .+.|+-|++..  +....  .+.......+..-.++...+|.+.+++..+|
T Consensus       158 ---~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g  234 (307)
T COG3386         158 ---LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG  234 (307)
T ss_pred             ---ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence               1122344577999999988888765 47888887752  21111  1111112345556688888998876655554


Q ss_pred             -cEEEEecCCCceeeeeeccCCCCceEEeCC-CCcEEEEec
Q 036585          241 -SVHAWSVRSGKEVASWMSFDTEPPVIKWAP-GSLMFVTGS  279 (304)
Q Consensus       241 -~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~  279 (304)
                       .|.+|+.. ++++..+..+...+++++|-- +.+.|+..+
T Consensus       235 ~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         235 GRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             ceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence             89999987 999998887778889999854 445444433

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.51  E-value=0.00031  Score=57.30  Aligned_cols=216  Identities=15%  Similarity=0.113  Sum_probs=121.7

Q ss_pred             ceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee-------------------------------------------e
Q 036585           59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-------------------------------------------S   95 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~-------------------------------------------~   95 (304)
                      .|..+.|+++..-|+++..   .|.|.||.....+.                                           .
T Consensus         3 ~v~~vs~a~~t~Elav~~~---~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~   79 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLE---SGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPL   79 (395)
T ss_dssp             -EEEEEEETTTTEEEEEET---TS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEE
T ss_pred             eEEEEEecCCCceEEEEcc---CCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCch
Confidence            4778888888888888888   88888876543211                                           1


Q ss_pred             eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec---------------cceeEecCCC-----e
Q 036585           96 RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG---------------RPAAAYDDQG-----L  155 (304)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~~~~~~~~-----~  155 (304)
                      ..+....++|++++.+.= .+++.|..+|.+.|.|+|....+..-....               -..+.+..++     .
T Consensus        80 ~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             EEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             hheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            112234678999998744 489999999999999998776655432222               0122234443     4


Q ss_pred             EEEecCCCeEEEEecC----------------CCCCceEEE-EecC-C-------------------cEEEEeeCCCeEE
Q 036585          156 VFGYEKGPLDIFSVGG----------------DISDANVVK-FSND-G-------------------RLMLLTTMEGHIH  198 (304)
Q Consensus       156 ~~~~~~~~~~~~~~~~----------------~~~~v~~~~-~~~~-~-------------------~~l~~~~~dg~i~  198 (304)
                      +++.+.|.+.+|.+..                +.+++..+. ++.+ |                   .-+++...+..++
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence            4567777777776531                233443333 3211 0                   1244445567899


Q ss_pred             EEEcCCCceeEEEEeCCCCCCcceEEEEc-----CCCcEEEEecCCCcEEEEecCCCceeeeeeccC----CCCceEEeC
Q 036585          199 VLDSFRGTLLSTYNVKPVSRNSTLEASFS-----PEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD----TEPPVIKWA  269 (304)
Q Consensus       199 ~~d~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~----~~i~~~~~~  269 (304)
                      ++...+.+...+..   ........+++-     ..+..|++-..+|.|++|.+-..+.+..+.-+.    ..+....++
T Consensus       239 v~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis  315 (395)
T PF08596_consen  239 VFKPPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS  315 (395)
T ss_dssp             EE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred             EEeCCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence            99988777655544   122233334442     356678888899999999999988887775432    235667889


Q ss_pred             CCCcEEEEecCc
Q 036585          270 PGSLMFVTGSSE  281 (304)
Q Consensus       270 ~~~~~l~s~~~d  281 (304)
                      ++|..++-.+..
T Consensus       316 ~~Gdi~~~~gps  327 (395)
T PF08596_consen  316 RNGDIFYWTGPS  327 (395)
T ss_dssp             TTS-EEEE-SSS
T ss_pred             CCCCEEEEeCcc
Confidence            999988777665

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.48  E-value=6.8e-08  Score=79.25  Aligned_cols=198  Identities=15%  Similarity=0.182  Sum_probs=126.7

Q ss_pred             cceeEEEEccCCC--eEEEEecCCCCCceEEEEccCcee--eeecccccccEEEEEEcC-CCCEEEEcc----cCCeEEE
Q 036585           58 YGVDLVCFTSHPT--TVIYSSKNGWDESLRLLSLHDNKY--SRYFKGHHDRVVLLSLCS-SKDCFISGS----LDRTVLL  128 (304)
Q Consensus        58 ~~v~~~~~~~~~~--~l~~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~i  128 (304)
                      ..+.|+++.-+..  .+++|..   +|.|-+-.+....-  -....++..+.++++|++ |.+.|++|-    .|..+.|
T Consensus        57 qy~kcva~~y~~d~cIlavG~a---tG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSA---TGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             CCceeehhhcCCchhhhhhccc---cCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            4577887766544  5666766   89999988765421  234456788999999998 556677663    3567999


Q ss_pred             EeCCcceee--ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCc
Q 036585          129 WDQRAEKCQ--GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  206 (304)
Q Consensus       129 wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  206 (304)
                      ||+.+.-..  .......                          +......+++|..+.+++.+|.....+.++|++...
T Consensus       134 wdi~s~ltvPke~~~fs~--------------------------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~  187 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSS--------------------------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL  187 (783)
T ss_pred             eecccccCCCcccccccc--------------------------ccccCccccccccCcchhhcccccchhhhhhhhhhh
Confidence            999876321  1111000                          012344578888889999999999999999998433


Q ss_pred             eeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEe-cCCCc-eeeeeecc----CCCCceEEeCCCC-cEEEEe
Q 036585          207 LLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWS-VRSGK-EVASWMSF----DTEPPVIKWAPGS-LMFVTG  278 (304)
Q Consensus       207 ~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d-~~~~~-~~~~~~~~----~~~i~~~~~~~~~-~~l~s~  278 (304)
                      ......    ....+..+..+| .++|+++-. ||.|.+|| .++-+ ++..+...    ...+..++|.|.. ..+++.
T Consensus       188 ~~~~sv----nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l  262 (783)
T KOG1008|consen  188 DSVSSV----NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVL  262 (783)
T ss_pred             hhhhhh----hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhh
Confidence            222111    223445567778 677887765 99999999 44433 23333211    2348899999964 467777


Q ss_pred             cCc-eEEeccCC
Q 036585          279 SSE-LSFWIPDL  289 (304)
Q Consensus       279 ~~d-~~iw~~~~  289 (304)
                      ..| +.|+.++.
T Consensus       263 ~RdS~tIrlydi  274 (783)
T KOG1008|consen  263 SRDSITIRLYDI  274 (783)
T ss_pred             ccCcceEEEecc
Confidence            777 44444433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.46  E-value=9.8e-06  Score=69.33  Aligned_cols=225  Identities=11%  Similarity=0.052  Sum_probs=138.1

Q ss_pred             ceeeeecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc
Q 036585           10 DKVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   89 (304)
Q Consensus        10 ~~~~~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~   89 (304)
                      ...+.+.|...+.|+|..-.|+.|-.-|.+.+|...+.+.-.....|..++..+.||++|..++++..   -|.+.+|..
T Consensus        54 r~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~---~g~v~lwr~  130 (1416)
T KOG3617|consen   54 RDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDN---PGSVHLWRY  130 (1416)
T ss_pred             cccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCC---CceeEEEEe
Confidence            33445566667888888888899988999999998877776667789999999999999999999998   899999977


Q ss_pred             cCceeeee------------------cc---------------cccccEE-EEEE-------------cCCCCEEEEccc
Q 036585           90 HDNKYSRY------------------FK---------------GHHDRVV-LLSL-------------CSSKDCFISGSL  122 (304)
Q Consensus        90 ~~~~~~~~------------------~~---------------~~~~~v~-~~~~-------------~~~~~~l~~~~~  122 (304)
                      ..-..++.                  +.               +....+- -.-|             .|+|..|+.++.
T Consensus       131 d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~  210 (1416)
T KOG3617|consen  131 DVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGK  210 (1416)
T ss_pred             eeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcC
Confidence            52111110                  00               0000000 0001             256778888889


Q ss_pred             CCeEEEEeCCcceeeceEEEeccc----------eeEec---CCCeEE-------------------EecCCCeEEEEec
Q 036585          123 DRTVLLWDQRAEKCQGLLRVQGRP----------AAAYD---DQGLVF-------------------GYEKGPLDIFSVG  170 (304)
Q Consensus       123 dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~~---~~~~~~-------------------~~~~~~~~~~~~~  170 (304)
                      +|+|+-.|-. +++....+.....          ...+.   ....++                   +...|.+..-.-.
T Consensus       211 ~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss  289 (1416)
T KOG3617|consen  211 SGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS  289 (1416)
T ss_pred             CceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc
Confidence            9998887733 3332222221110          00000   001111                   1111111111000


Q ss_pred             -----------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC-------CceeEEEEeCCCCCCcceEEEEcCCCcE
Q 036585          171 -----------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-------GTLLSTYNVKPVSRNSTLEASFSPEGMF  232 (304)
Q Consensus       171 -----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------~~~~~~~~~~~~~~~~i~~~~~s~~~~~  232 (304)
                                 .....+++++++..+..+..|...|.+.+|--..       +.....++......+.|+.+.|.|-.+.
T Consensus       290 GvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~  369 (1416)
T KOG3617|consen  290 GVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKST  369 (1416)
T ss_pred             ccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccch
Confidence                       0235688999999999999999999999995321       1234444444456678999999996665


Q ss_pred             EEEecC
Q 036585          233 VISGSG  238 (304)
Q Consensus       233 l~~~~~  238 (304)
                      ++.-+.
T Consensus       370 ~avn~~  375 (1416)
T KOG3617|consen  370 AAVNTE  375 (1416)
T ss_pred             hhhhhh
Confidence            555443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.45  E-value=0.00022  Score=57.09  Aligned_cols=178  Identities=13%  Similarity=0.123  Sum_probs=107.6

Q ss_pred             CeEEEEecCCcceeeeecccc-cceeEEE---EccC----CCeEEEEecCC------CC-CceEEEEccCc----eeeee
Q 036585           37 ESIRLYDVTAATCLKTINSKK-YGVDLVC---FTSH----PTTVIYSSKNG------WD-ESLRLLSLHDN----KYSRY   97 (304)
Q Consensus        37 ~~i~vw~~~~~~~~~~~~~~~-~~v~~~~---~~~~----~~~l~~~~~~~------~d-~~i~vwd~~~~----~~~~~   97 (304)
                      ..|++.|..+.+.+.++.-.. ..+.+++   +..+    ..++++|+.-.      .. |.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            368999988888776665432 2344443   3332    46777776410      12 89999999884    12221


Q ss_pred             c--ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce-eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585           98 F--KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS  174 (304)
Q Consensus        98 ~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (304)
                      +  ....++|++++-. ++ .++++. .+.|.+|++...+ ....-...                              .
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~------------------------------~  128 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD------------------------------S  128 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-------------------------------B
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec------------------------------c
Confidence            1  2356789988876 44 344433 4789999998877 22222111                              1


Q ss_pred             CceEEEEecCCcEEEEeeCCCeEEEEEcCC-CceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          175 DANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                      .+........++++++|.....+.++..+. ...+..+... .....++++.|-++++.+++++.+|.+.++...
T Consensus       129 ~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d-~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  129 PFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARD-YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEE-SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             eEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEec-CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            223334444467899999888888875543 3323333322 345678888888676799999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.44  E-value=2.8e-06  Score=70.81  Aligned_cols=166  Identities=17%  Similarity=0.192  Sum_probs=113.3

Q ss_pred             ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEE
Q 036585          101 HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVK  180 (304)
Q Consensus       101 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  180 (304)
                      +...|.--++...+++++.|+.-|.+++|+-..+.... ++..                           +..+.+..+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~---------------------------~~~~~~~~~~   83 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNE---------------------------GATGITCVRS   83 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-cccc---------------------------CccceEEEEE
Confidence            34445545566678899999999999999865544322 2211                           2334566678


Q ss_pred             EecCCcEEEEeeCCCeEEEEEcCCCceeEEEE---eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC----cee
Q 036585          181 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN---VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG----KEV  253 (304)
Q Consensus       181 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~----~~~  253 (304)
                      .+++..++|+|+..|.|.++-+....+.....   ....|...|++++|++|+..+++|...|.|..-.+.+.    ...
T Consensus        84 vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~  163 (726)
T KOG3621|consen   84 VSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKS  163 (726)
T ss_pred             ecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcccc
Confidence            89999999999999999999987644332222   22236789999999999999999999999998888762    112


Q ss_pred             eeeeccCCCCceEEeCCCCcEEEEecCceEEeccCCcccccc
Q 036585          254 ASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAY  295 (304)
Q Consensus       254 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~~~~~  295 (304)
                      ..+..-.++|..+... ++.+|++......+.+.+.+++.+.
T Consensus       164 q~il~~ds~IVQlD~~-q~~LLVStl~r~~Lc~tE~eti~QI  204 (726)
T KOG3621|consen  164 QEILSEDSEIVQLDYL-QSYLLVSTLTRCILCQTEAETITQI  204 (726)
T ss_pred             ceeeccCcceEEeecc-cceehHhhhhhhheeecchhHHHHh
Confidence            3334456677777653 4455555555566666666655444

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.41  E-value=0.00075  Score=56.23  Aligned_cols=235  Identities=15%  Similarity=0.109  Sum_probs=122.9

Q ss_pred             eEeecccCcEEEEe-eCCC----eEEEEecCCcceeeee-cccccceeEEEEccCCCeEEEEecCCC--------CCceE
Q 036585           20 ILQSMEVGIYLVTA-SDDE----SIRLYDVTAATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGW--------DESLR   85 (304)
Q Consensus        20 ~i~~~~~~~~l~~~-~~d~----~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~--------d~~i~   85 (304)
                      ...++|+|+++|.+ +..|    .++++|+++++.+... ...  ....+.|.++++.++.......        ...|+
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            46788999998865 3444    4999999999776532 222  2234999999998888775321        33478


Q ss_pred             EEEccCceee--eeccccccc--EEEEEEcCCCCEEEEccc---C-CeEEEEeCCcc----eeeceEEEeccceeEecCC
Q 036585           86 LLSLHDNKYS--RYFKGHHDR--VVLLSLCSSKDCFISGSL---D-RTVLLWDQRAE----KCQGLLRVQGRPAAAYDDQ  153 (304)
Q Consensus        86 vwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-g~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~  153 (304)
                      .|.+.+....  ..+......  ...+..++++++++....   + ..+.+.|+...    .....+..           
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~-----------  274 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP-----------  274 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE-----------
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC-----------
Confidence            8888765432  334433332  567888999998775432   2 45777777764    11111111           


Q ss_pred             CeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEe---eCCCeEEEEEcCCCce---eEEEEeCCCCCC--cceEEE
Q 036585          154 GLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLT---TMEGHIHVLDSFRGTL---LSTYNVKPVSRN--STLEAS  225 (304)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~~~d~~~~~~---~~~~~~~~~~~~--~i~~~~  225 (304)
                                        ....+....-+..+.+++..   ...+.|.-.++.+...   ...+.   .+..  .+..+.
T Consensus       275 ------------------~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~  333 (414)
T PF02897_consen  275 ------------------REDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVS  333 (414)
T ss_dssp             ------------------SSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEE
T ss_pred             ------------------CCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEE
Confidence                              11122222222234444333   2346777788776653   22332   2333  344444


Q ss_pred             EcCCCcEEEEe-cCCC--cEEEEecCCCceeeeeec-cCCCCceEEeCCCCcEE-EEe-cCc--eEEeccCCc
Q 036585          226 FSPEGMFVISG-SGDG--SVHAWSVRSGKEVASWMS-FDTEPPVIKWAPGSLMF-VTG-SSE--LSFWIPDLS  290 (304)
Q Consensus       226 ~s~~~~~l~~~-~~dg--~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l-~s~-~~d--~~iw~~~~~  290 (304)
                        ..+++|+.. ..++  .|+++++..+.....+.. -.+.|..+...+++..+ ++. |.-  -.+|.++..
T Consensus       334 --~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~  404 (414)
T PF02897_consen  334 --LFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLA  404 (414)
T ss_dssp             --EETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETT
T ss_pred             --EECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence              444455544 3343  589999883444444332 23345566655655433 222 222  566655543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.41  E-value=1.6e-05  Score=69.27  Aligned_cols=138  Identities=17%  Similarity=0.234  Sum_probs=92.5

Q ss_pred             CCceEEEEccCceeeeeccccccc-EEEEEEcC-----CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCC
Q 036585           81 DESLRLLSLHDNKYSRYFKGHHDR-VVLLSLCS-----SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG  154 (304)
Q Consensus        81 d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  154 (304)
                      ...|+-.|++.|+.+..+..|... |..++-..     +...-+.|-.+..+..||.|-... ........         
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k---------  572 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSK---------  572 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeecccc---------
Confidence            678999999999999999877653 55443221     123455666778899999985431 11110000         


Q ss_pred             eEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEE
Q 036585          155 LVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  234 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  234 (304)
                                 -|   ......+|++-+.+| +||+|+.+|.||+|| +.++..++.  .++...+|..+..+.||++|+
T Consensus       573 -----------~Y---~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~--lp~lG~pI~~iDvt~DGkwil  634 (794)
T PF08553_consen  573 -----------QY---SSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTA--LPGLGDPIIGIDVTADGKWIL  634 (794)
T ss_pred             -----------cc---ccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhc--CCCCCCCeeEEEecCCCcEEE
Confidence                       00   123456777777777 499999999999999 444332222  225678999999999999988


Q ss_pred             EecCCCcEEEEec
Q 036585          235 SGSGDGSVHAWSV  247 (304)
Q Consensus       235 ~~~~dg~i~v~d~  247 (304)
                      +.+ +..+.++++
T Consensus       635 aTc-~tyLlLi~t  646 (794)
T PF08553_consen  635 ATC-KTYLLLIDT  646 (794)
T ss_pred             Eee-cceEEEEEE
Confidence            776 456777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.40  E-value=0.00051  Score=53.75  Aligned_cols=222  Identities=13%  Similarity=0.131  Sum_probs=128.8

Q ss_pred             ccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec------
Q 036585           25 EVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF------   98 (304)
Q Consensus        25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~------   98 (304)
                      ..++.|+.|..+| +.+++.........+. +...|..+...|+-+.+++-+    |+.++++++..-......      
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs----d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS----DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc----CCccEEEEchhhcccccccccccc
Confidence            4578999999998 8999983322222222 222499999999998888887    899999998764433311      


Q ss_pred             --------ccccccEEEEE--EcCCCCEEEEcccCCeEEEEeCCcce-----eeceEEEeccceeEecCCCeEEEecCCC
Q 036585           99 --------KGHHDRVVLLS--LCSSKDCFISGSLDRTVLLWDQRAEK-----CQGLLRVQGRPAAAYDDQGLVFGYEKGP  163 (304)
Q Consensus        99 --------~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (304)
                              ......+...+  -.+.+...++......|.+|......     ..+.+.                      
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~----------------------  136 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS----------------------  136 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE----------------------
Confidence                    11223444444  11233344444445688888876532     222222                      


Q ss_pred             eEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC---------CCCcceEEEEcCCCcEEE
Q 036585          164 LDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---------SRNSTLEASFSPEGMFVI  234 (304)
Q Consensus       164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---------~~~~i~~~~~s~~~~~l~  234 (304)
                              -...+..++|.  ++.+++|..+ ...+.|+.++.....+.....         ...++..+..+ ++.+|+
T Consensus       137 --------lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll  204 (275)
T PF00780_consen  137 --------LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLL  204 (275)
T ss_pred             --------cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEE
Confidence                    12467778887  5567777655 477889887766544431110         11234434443 456666


Q ss_pred             EecCCCcEEEEecCCCceee--eeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCccc
Q 036585          235 SGSGDGSVHAWSVRSGKEVA--SWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSKL  292 (304)
Q Consensus       235 ~~~~dg~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~~  292 (304)
                      +-  |..-.+.| ..|++.+  .+.- ...+..+++  ...+|+..+.+ +.||++...++
T Consensus       205 ~~--~~~g~fv~-~~G~~~r~~~i~W-~~~p~~~~~--~~pyli~~~~~~iEV~~~~~~~l  259 (275)
T PF00780_consen  205 CY--DNIGVFVN-KNGEPSRKSTIQW-SSAPQSVAY--SSPYLIAFSSNSIEVRSLETGEL  259 (275)
T ss_pred             Ee--cceEEEEc-CCCCcCcccEEEc-CCchhEEEE--ECCEEEEECCCEEEEEECcCCcE
Confidence            54  33333334 3554433  2222 335566666  34577777777 99999876554

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.37  E-value=0.00048  Score=52.20  Aligned_cols=201  Identities=12%  Similarity=0.111  Sum_probs=111.6

Q ss_pred             eeeEeeccc-CcEEEEeeCCCeEEEEecCCcceeeeeccc-ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce--
Q 036585           18 EEILQSMEV-GIYLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--   93 (304)
Q Consensus        18 ~~~i~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~--   93 (304)
                      ...+++.|+ +.++++....+.|..++. +|+.++.+... .+..-.+++..++.++++.-.   ++.+.++++....  
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er---~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER---DQRLYIFTIDDDTTS   99 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETT---TTEEEEEEE----TT
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC---CCcEEEEEEeccccc
Confidence            456888887 456677777788888886 47888776543 246778888877766665544   8889999884321  


Q ss_pred             ----eeeecc-----cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce---eeceEEEeccceeEecCCCeEEEecC
Q 036585           94 ----YSRYFK-----GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK---CQGLLRVQGRPAAAYDDQGLVFGYEK  161 (304)
Q Consensus        94 ----~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (304)
                          ....+.     .+...+..++|.|.++.|+.+-......+|.+....   ............              
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~--------------  165 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD--------------  165 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH---------------
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc--------------
Confidence                111111     244568999999987777777666666666654311   111111000000              


Q ss_pred             CCeEEEEecCCCCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCC------CCcceEEEEcCCCcEEE
Q 036585          162 GPLDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS------RNSTLEASFSPEGMFVI  234 (304)
Q Consensus       162 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~  234 (304)
                             .......+..++++|. +.+++.+..+..|..+| .+|+.+..+....+.      -...-.++|.++|++.+
T Consensus       166 -------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI  237 (248)
T PF06977_consen  166 -------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI  237 (248)
T ss_dssp             -------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred             -------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence                   0112345788999985 56777778888999999 788888877754322      13567899999996555


Q ss_pred             EecCCCcEEEE
Q 036585          235 SGSGDGSVHAW  245 (304)
Q Consensus       235 ~~~~dg~i~v~  245 (304)
                      +. +-+..++|
T Consensus       238 vs-EpNlfy~f  247 (248)
T PF06977_consen  238 VS-EPNLFYRF  247 (248)
T ss_dssp             EE-TTTEEEEE
T ss_pred             Ec-CCceEEEe
Confidence            54 55555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.35  E-value=0.00039  Score=58.98  Aligned_cols=217  Identities=16%  Similarity=0.172  Sum_probs=124.5

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeeccccc------cee--EEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKY------GVD--LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      +..++.++.++.+.-.|..+++.+-++.....      .+.  .++.. ++..++.++.   ++.|+-+|.++++.+..+
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~---~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF---DGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC---CCeEEEEECCCCCEeeee
Confidence            56677788889999999999988766543321      000  01111 2267777776   999999999999987666


Q ss_pred             cccccc--EEEEEEcC--CCCEEEEcc---------cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           99 KGHHDR--VVLLSLCS--SKDCFISGS---------LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        99 ~~~~~~--v~~~~~~~--~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                      ......  -..+.-+|  .+..++.++         .++.+..+|..+++....+.............+       ....
T Consensus       137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~-------~~~~  209 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWG-------PDRQ  209 (488)
T ss_pred             cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCC-------CCcc
Confidence            532210  00111111  123455543         368899999999998877765321110000000       0000


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEeeCCC------------------eEEEEEcCCCceeEEEEeCCCCCC----cceE
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTTMEG------------------HIHVLDSFRGTLLSTYNVKPVSRN----STLE  223 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------~i~~~d~~~~~~~~~~~~~~~~~~----~i~~  223 (304)
                      .+ .......-...++.+.+..+++++.++                  .|.-+|..+|+....++... +..    ....
T Consensus       210 ~~-~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~-~~~~~~~~~s~  287 (488)
T cd00216         210 MW-GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP-HDLWDYDGPNQ  287 (488)
T ss_pred             ee-cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC-CCCcccccCCC
Confidence            00 000000112345555566677776554                  79999999999998876421 110    0000


Q ss_pred             EEEc----CCCc---EEEEecCCCcEEEEecCCCceeeee
Q 036585          224 ASFS----PEGM---FVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       224 ~~~s----~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      ..+.    -++.   .++.++.+|.++..|.++++.+-..
T Consensus       288 p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         288 PSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             CeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence            1111    1333   6788889999999999999987654

The alignment model contains an 8-bladed beta-propeller.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.28  E-value=1.8e-07  Score=76.89  Aligned_cols=190  Identities=11%  Similarity=0.117  Sum_probs=121.5

Q ss_pred             CcEEEEeeCCCeEEEEecCCcc--eeeeecccccceeEEEEccC-CCeEEEEecC-CCCCceEEEEccCc--eeeee--c
Q 036585           27 GIYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSH-PTTVIYSSKN-GWDESLRLLSLHDN--KYSRY--F   98 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~-~~d~~i~vwd~~~~--~~~~~--~   98 (304)
                      ..+++.|..+|.|-+-......  -.....++..+.++++|++- .+.|++|-.. ..|..+.|||+.++  .+...  +
T Consensus        70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f  149 (783)
T KOG1008|consen   70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF  149 (783)
T ss_pred             hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence            3578899999999988765432  12345567788999999984 4566666431 12778999999876  22211  2


Q ss_pred             cc-ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee-eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585           99 KG-HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA  176 (304)
Q Consensus        99 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  176 (304)
                      .+ ......+++|..+.+++++|...+.+.++|++.... ...+                               .+..+
T Consensus       150 s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-------------------------------nTk~v  198 (783)
T KOG1008|consen  150 SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-------------------------------NTKYV  198 (783)
T ss_pred             ccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-------------------------------hhhhc
Confidence            21 223455788888888999999989999999984322 1111                               12345


Q ss_pred             eEEEEec-CCcEEEEeeCCCeEEEEEc-CCC-ceeEEEE-eCCCCCCcceEEEEcCCCc-EEEEecC-CCcEEEEecC
Q 036585          177 NVVKFSN-DGRLMLLTTMEGHIHVLDS-FRG-TLLSTYN-VKPVSRNSTLEASFSPEGM-FVISGSG-DGSVHAWSVR  248 (304)
Q Consensus       177 ~~~~~~~-~~~~l~~~~~dg~i~~~d~-~~~-~~~~~~~-~~~~~~~~i~~~~~s~~~~-~l~~~~~-dg~i~v~d~~  248 (304)
                      ..+..+| .+.+++.-. ||.|-+||. ++- .++..+. ........+..++|+|-.. .+++... .++|+.+|+.
T Consensus       199 qG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  199 QGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            5677888 667666555 999999993 322 1222221 1111233588999999433 4455554 4689999985

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.25  E-value=5.8e-05  Score=65.93  Aligned_cols=99  Identities=13%  Similarity=0.154  Sum_probs=70.9

Q ss_pred             EEEEeeCCCeEEEEEcCCCc--eeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce-eeeeeccCCCC
Q 036585          187 LMLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE-VASWMSFDTEP  263 (304)
Q Consensus       187 ~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i  263 (304)
                      .-++|-.+..+..||.|-..  .+......-.......|++-+.+| +||+|+.+|.||+||- .++. ...+++-..+|
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI  621 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPI  621 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCe
Confidence            35667777889999988542  221111011245567778877776 7999999999999994 4443 33456778999


Q ss_pred             ceEEeCCCCcEEEEecCc-eEEecc
Q 036585          264 PVIKWAPGSLMFVTGSSE-LSFWIP  287 (304)
Q Consensus       264 ~~~~~~~~~~~l~s~~~d-~~iw~~  287 (304)
                      ..|..+.||++++..+.. +.+++.
T Consensus       622 ~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  622 IGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             eEEEecCCCcEEEEeecceEEEEEE
Confidence            999999999999888888 767665

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.22  E-value=0.00079  Score=53.96  Aligned_cols=182  Identities=18%  Similarity=0.197  Sum_probs=104.7

Q ss_pred             CcEEEEeeC----------CCeEEEEecCCc----ceeeee--cccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585           27 GIYLVTASD----------DESIRLYDVTAA----TCLKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   90 (304)
Q Consensus        27 ~~~l~~~~~----------d~~i~vw~~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~   90 (304)
                      -.+|+.|..          .|.|.++++.+.    ..+..+  ....++|++++--  +.+|+++.    .+.|.+|++.
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~----g~~l~v~~l~  115 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV----GNKLYVYDLD  115 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE----TTEEEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee----cCEEEEEEcc
Confidence            467777753          288999999874    122222  1235788888765  44566666    7899999998


Q ss_pred             Cce-eeeecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCc-ceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585           91 DNK-YSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF  167 (304)
Q Consensus        91 ~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (304)
                      ..+ ....-. .....+.++...  +++++.|.....+.++..+. ......+...                        
T Consensus       116 ~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d------------------------  169 (321)
T PF03178_consen  116 NSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARD------------------------  169 (321)
T ss_dssp             TTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEE------------------------
T ss_pred             CcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEec------------------------
Confidence            877 332222 122255565554  55899998888788775443 1212222211                        


Q ss_pred             EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC-------Cc--eeEEEEeCCCCCCcceEE---EEcC--CC---
Q 036585          168 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-------GT--LLSTYNVKPVSRNSTLEA---SFSP--EG---  230 (304)
Q Consensus       168 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------~~--~~~~~~~~~~~~~~i~~~---~~s~--~~---  230 (304)
                         .....++++.|-++++.++++..+|.+.++....       +.  .......  .....|+++   ++.|  .+   
T Consensus       170 ---~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f--~lg~~v~~~~~~~l~~~~~~~~~  244 (321)
T PF03178_consen  170 ---YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF--HLGDIVNSFRRGSLIPRSGSSES  244 (321)
T ss_dssp             ---SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE--E-SS-EEEEEE--SS--SSSS-T
T ss_pred             ---CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE--ECCCccceEEEEEeeecCCCCcc
Confidence               1223467788886667899999999999988752       22  2222221  144567766   5555  12   


Q ss_pred             ---cEEEEecCCCcEEEE
Q 036585          231 ---MFVISGSGDGSVHAW  245 (304)
Q Consensus       231 ---~~l~~~~~dg~i~v~  245 (304)
                         ..++.++.+|.|.+.
T Consensus       245 ~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  245 PNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             TEEEEEEEEETTS-EEEE
T ss_pred             cccceEEEEecCCEEEEE
Confidence               247777789988844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.3e-05  Score=66.15  Aligned_cols=93  Identities=17%  Similarity=0.288  Sum_probs=76.3

Q ss_pred             CCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcce-EEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585          174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMFVISGSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  252 (304)
                      ..+..+.|+|.-.++|.+..+|.|.+..+. .+.+.++.   .++..++ +++|.|||+.||.|-.||+|++.|..++..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip---~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP---IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc---CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            456779999999999999999999999887 77777776   3555666 999999999999999999999999999887


Q ss_pred             eeee-eccCCCCceEEeCC
Q 036585          253 VASW-MSFDTEPPVIKWAP  270 (304)
Q Consensus       253 ~~~~-~~~~~~i~~~~~~~  270 (304)
                      +... ......|.++-|.+
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            6663 22456677777863

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.13  E-value=0.00061  Score=58.65  Aligned_cols=210  Identities=14%  Similarity=0.097  Sum_probs=108.5

Q ss_pred             CCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEec-----CCCCCceEEEEccCceeeeecccccccEEEEEE
Q 036585           36 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-----NGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSL  110 (304)
Q Consensus        36 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  110 (304)
                      +|.+.-.+-..-..+.-..+....+...+++|+++.+++...     ......|.+++.. +.......+  .....-.|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceE
Confidence            565544432222222222233346788999999999888762     1112355555642 222222222  23788899


Q ss_pred             cCCCCEEEEcccC-CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEE
Q 036585          111 CSSKDCFISGSLD-RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLML  189 (304)
Q Consensus       111 ~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  189 (304)
                      +|+|+.+++.... ..+++.+-.....+..+.....                 ....    .....|..+.|||||..++
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~g-----------------e~~~----~~~g~Issl~wSpDG~RiA  463 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDAS-----------------AVAS----RVPGPISELQLSRDGVRAA  463 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCCCceEEEEeccCc-----------------hhhh----ccCCCcCeEEECCCCCEEE
Confidence            9998887776543 2233332211111111111100                 0000    1235699999999999888


Q ss_pred             EeeCCCeEEE---EEcCCCceeE--EEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC-CCceeeeeec--cCC
Q 036585          190 LTTMEGHIHV---LDSFRGTLLS--TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR-SGKEVASWMS--FDT  261 (304)
Q Consensus       190 ~~~~dg~i~~---~d~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~--~~~  261 (304)
                      ... +|+|++   -....|....  ...........+..+.|.+++.++ .+..++.-.+|.+. +|.....+..  ...
T Consensus       464 ~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~  541 (591)
T PRK13616        464 MII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSA  541 (591)
T ss_pred             EEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccC
Confidence            766 477777   4444554111  111111233446789999999855 54444444455442 2322222222  256


Q ss_pred             CCceEEeCCC
Q 036585          262 EPPVIKWAPG  271 (304)
Q Consensus       262 ~i~~~~~~~~  271 (304)
                      ++..++=+++
T Consensus       542 ~v~~vaa~~~  551 (591)
T PRK13616        542 PVVAVAASPS  551 (591)
T ss_pred             ceEEEecCCc
Confidence            6777777763

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=2.6e-05  Score=64.50  Aligned_cols=96  Identities=14%  Similarity=0.076  Sum_probs=79.0

Q ss_pred             eeecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeeccccccee-EEEEccCCCeEEEEecCCCCCceEEEEccC
Q 036585           13 SLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVD-LVCFTSHPTTVIYSSKNGWDESLRLLSLHD   91 (304)
Q Consensus        13 ~~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~   91 (304)
                      .+......+.|.|--+++|++..+|.|.+..++ .+.+.++..|...+. +++|.|||+.|++|-.   ||+|++.|+++
T Consensus        18 ~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k---dG~I~L~Dve~   93 (665)
T KOG4640|consen   18 SLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK---DGTIRLHDVEK   93 (665)
T ss_pred             ccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec---CCeEEEEEccC
Confidence            344456678899999999999999999999987 777888887777777 9999999999999999   99999999999


Q ss_pred             ceeeeecc-cccccEEEEEEcC
Q 036585           92 NKYSRYFK-GHHDRVVLLSLCS  112 (304)
Q Consensus        92 ~~~~~~~~-~~~~~v~~~~~~~  112 (304)
                      +..+..+. .....|.++-|.+
T Consensus        94 ~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   94 GGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             CCceeccccccccchheeeccc
Confidence            88776632 2445777777763

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.06  E-value=0.0049  Score=51.38  Aligned_cols=203  Identities=14%  Similarity=0.091  Sum_probs=108.0

Q ss_pred             ceeEEEEccCCCeEEEEecC-C-CCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccC-----------Ce
Q 036585           59 GVDLVCFTSHPTTVIYSSKN-G-WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLD-----------RT  125 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~~-~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~  125 (304)
                      .+....++|++++++.+-+. | ....++++|+.+++.+...-.. .....+.|.++++.|+....+           ..
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467899999999987542 1 1256999999999765532111 122349999998876655422           24


Q ss_pred             EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC---C-CeEEEEE
Q 036585          126 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM---E-GHIHVLD  201 (304)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~~~d  201 (304)
                      |+.|.+.+......+-..                         -.........+..+++++++++...   + ..+++.|
T Consensus       204 v~~~~~gt~~~~d~lvfe-------------------------~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d  258 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFE-------------------------EPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLD  258 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC--------------------------TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEE
T ss_pred             EEEEECCCChHhCeeEEe-------------------------ecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEe
Confidence            677777665443222111                         1111112456888999998886443   2 4588888


Q ss_pred             cCCC----ceeEEEEeCCCCCCcceEEEEcCCCcEEEEec---CCCcEEEEecCCCce---eeeeeccCCC--CceEEeC
Q 036585          202 SFRG----TLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVHAWSVRSGKE---VASWMSFDTE--PPVIKWA  269 (304)
Q Consensus       202 ~~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~v~d~~~~~~---~~~~~~~~~~--i~~~~~~  269 (304)
                      +..+    .....+..  ...+....+... .+.+++...   .++.|.-.++.+...   ...+..+...  +..+.. 
T Consensus       259 ~~~~~~~~~~~~~l~~--~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~-  334 (414)
T PF02897_consen  259 LDDGGSPDAKPKLLSP--REDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL-  334 (414)
T ss_dssp             CCCTTTSS-SEEEEEE--SSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE-
T ss_pred             ccccCCCcCCcEEEeC--CCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE-
Confidence            8774    22233331  122222333333 444444442   345677778877653   2244555543  444443 


Q ss_pred             CCCcEEE-EecCc----eEEeccC-Cccc
Q 036585          270 PGSLMFV-TGSSE----LSFWIPD-LSKL  292 (304)
Q Consensus       270 ~~~~~l~-s~~~d----~~iw~~~-~~~~  292 (304)
                       .+.+|+ ..-.+    ++++++. ....
T Consensus       335 -~~~~Lvl~~~~~~~~~l~v~~~~~~~~~  362 (414)
T PF02897_consen  335 -FKDYLVLSYRENGSSRLRVYDLDDGKES  362 (414)
T ss_dssp             -ETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred             -ECCEEEEEEEECCccEEEEEECCCCcEE
Confidence             333443 33333    7788877 4443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.05  E-value=0.0034  Score=49.45  Aligned_cols=202  Identities=15%  Similarity=0.154  Sum_probs=116.1

Q ss_pred             EEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEE
Q 036585           63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV  142 (304)
Q Consensus        63 ~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  142 (304)
                      ..|.++...|+.+.-.  .+.|.-|+..+++. ..+. +.+.+.++.....+..|+++..  -+.+++.+++.....+..
T Consensus        30 P~w~~~~~~L~w~DI~--~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          30 PVWDPDRGALLWVDIL--GGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             ccCcCCCCEEEEEeCC--CCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence            3566777766655542  78888898876642 2233 2333445444444445555543  356666655444222211


Q ss_pred             eccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-----------CCeEEEEEcCCCceeEEE
Q 036585          143 QGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-----------EGHIHVLDSFRGTLLSTY  211 (304)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~~~d~~~~~~~~~~  211 (304)
                      ...                        .......+.+...|+|.+.+....           -|.++.+|. .+...+..
T Consensus       104 ~~~------------------------~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~  158 (307)
T COG3386         104 PED------------------------GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL  158 (307)
T ss_pred             ccC------------------------CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee
Confidence            100                        011234566778888875554322           134555554 45555444


Q ss_pred             EeCCCCCCcceEEEEcCCCcEEEEecC-CCcEEEEecCC--Cce-----eeeeeccCCCCceEEeCCCCcEEEEecC---
Q 036585          212 NVKPVSRNSTLEASFSPEGMFVISGSG-DGSVHAWSVRS--GKE-----VASWMSFDTEPPVIKWAPGSLMFVTGSS---  280 (304)
Q Consensus       212 ~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~v~d~~~--~~~-----~~~~~~~~~~i~~~~~~~~~~~l~s~~~---  280 (304)
                      .   .+-..-+.++||||++.|+.+.. .+.|+-|++..  +..     ........+..-.++...+|.+.+++-.   
T Consensus       159 ~---~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~  235 (307)
T COG3386         159 D---DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGG  235 (307)
T ss_pred             c---CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCc
Confidence            4   33455677999999988887754 47788887752  211     1122234566677888888888755544   


Q ss_pred             ceEEeccCCccccccccC
Q 036585          281 ELSFWIPDLSKLGAYVGR  298 (304)
Q Consensus       281 d~~iw~~~~~~~~~~~~~  298 (304)
                      .+..|+.+.+.+..+.-.
T Consensus       236 ~v~~~~pdG~l~~~i~lP  253 (307)
T COG3386         236 RVVRFNPDGKLLGEIKLP  253 (307)
T ss_pred             eEEEECCCCcEEEEEECC
Confidence            389999997776665443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=98.05  E-value=0.0069  Score=53.89  Aligned_cols=214  Identities=12%  Similarity=0.140  Sum_probs=121.9

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccc--------eeEEEEc----------------cCCCeEEEEecCCCCC
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYG--------VDLVCFT----------------SHPTTVIYSSKNGWDE   82 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~l~~~~~~~~d~   82 (304)
                      +..|+.++.++.|.-.|..+|+.+-++......        ...+++.                ..+..++.++.   |+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~---Dg  270 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS---DA  270 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC---CC
Confidence            677888888899999999999887666532210        1122221                13447788877   99


Q ss_pred             ceEEEEccCceeeeecccccccE-------------EEEEEcC--CCCEEEEccc----------CCeEEEEeCCcceee
Q 036585           83 SLRLLSLHDNKYSRYFKGHHDRV-------------VLLSLCS--SKDCFISGSL----------DRTVLLWDQRAEKCQ  137 (304)
Q Consensus        83 ~i~vwd~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~  137 (304)
                      .+.-.|.++|+....+.. .+.|             ..+.-.|  -+..++.++.          +|.|+-+|.++++..
T Consensus       271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            999999999998766532 1111             0111112  1335555532          688999999999998


Q ss_pred             ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEE------------------eeCCCeEEE
Q 036585          138 GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLL------------------TTMEGHIHV  199 (304)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~------------------~~~dg~i~~  199 (304)
                      ..+.............+..+..  +.-..|         ...++++....++.                  ....+.|.-
T Consensus       350 W~~~~g~p~~~~~~~~g~~~~~--gg~n~W---------~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA  418 (764)
T TIGR03074       350 WAWDPGNPDPTAPPAPGETYTR--NTPNSW---------SVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA  418 (764)
T ss_pred             eEEecCCCCcccCCCCCCEecc--CCCCcc---------CceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence            8876432111000011111100  000000         11222222211111                  112456788


Q ss_pred             EEcCCCceeEEEEeCCCCC-------CcceEEEEcC-CCc---EEEEecCCCcEEEEecCCCceeeee
Q 036585          200 LDSFRGTLLSTYNVKPVSR-------NSTLEASFSP-EGM---FVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       200 ~d~~~~~~~~~~~~~~~~~-------~~i~~~~~s~-~~~---~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      .|.++|+....++..+ |+       ....-+.+.. +|+   .++.++.+|.++++|.++++++...
T Consensus       419 LD~~TGk~~W~~Q~~~-hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       419 LDATTGKERWVFQTVH-HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             EeCCCCceEEEecccC-CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            8999999988887421 11       1111122333 553   7899999999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>smart00320 WD40 WD40 repeats

Probab=98.03  E-value=1.7e-05  Score=40.70  Aligned_cols=38  Identities=29%  Similarity=0.482  Sum_probs=33.3

Q ss_pred             eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEe
Q 036585           93 KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD  130 (304)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  130 (304)
                      ++...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566677888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.03  E-value=0.0068  Score=51.92  Aligned_cols=109  Identities=15%  Similarity=0.059  Sum_probs=67.7

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccc-ccee----------EEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKK-YGVD----------LVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      +..++.++.++.|.-.|..+++.+-++.... ..+.          .+++  .+..++.++.   |+.+.-.|..+|+.+
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~---dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL---DARLVALDAKTGKVV  143 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC---CCEEEEEECCCCCEE
Confidence            5677777788899999999999886654321 1111          1122  2346677776   999999999999987


Q ss_pred             eeccccccc-EEEEEEcC---CCCEEEEcc------cCCeEEEEeCCcceeeceEE
Q 036585           96 RYFKGHHDR-VVLLSLCS---SKDCFISGS------LDRTVLLWDQRAEKCQGLLR  141 (304)
Q Consensus        96 ~~~~~~~~~-v~~~~~~~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~  141 (304)
                      ......... -..+.-+|   ++ .++.+.      .+|.|.-+|.++++.+..+.
T Consensus       144 W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       144 WSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             eecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            655421100 00111112   34 444443      36899999999998876643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.01  E-value=0.0039  Score=49.91  Aligned_cols=244  Identities=14%  Similarity=0.086  Sum_probs=103.9

Q ss_pred             ecccCcEEEEee-CCC--eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           23 SMEVGIYLVTAS-DDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        23 ~~~~~~~l~~~~-~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      |..+|+.|+.++ .||  .+.+.|+.+++..+.-.+.........++|+.+.++....   ...|+-.|+.+.+....+.
T Consensus        43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~---~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN---GRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET---TTEEEEEETTT--EEEEEE
T ss_pred             cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC---CCeEEEEECCcCcEEEEEE
Confidence            456786655554 455  4667788888766655543333335677888888887765   6788999999987666665


Q ss_pred             cccccEEEEEEc--CCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585          100 GHHDRVVLLSLC--SSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus       100 ~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      .....+-...|.  .++..++-.-....       .......... -.....-.+...++..+...-....+-....-+.
T Consensus       120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~-------d~~~l~~~~~-f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlg  191 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCTKLVGIEISRE-------DWKPLTKWKG-FREFYEARPHCRIFTIDLKTGERKVVFEDTDWLG  191 (386)
T ss_dssp             --TTEEEEEEEEE-TTSSEEEEEEEEGG-------G-----SHHH-HHHHHHC---EEEEEEETTT--EEEEEEESS-EE
T ss_pred             CCcccccccceeeCCCccEEEEEEEeeh-------hccCccccHH-HHHHHhhCCCceEEEEECCCCceeEEEecCcccc
Confidence            555555445554  34444332211000       0000000000 0000000011111111111111111112334567


Q ss_pred             EEEEecCCcEEEEeeCCC-------eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEE-----ecCCCcEEEE
Q 036585          178 VVKFSNDGRLMLLTTMEG-------HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS-----GSGDGSVHAW  245 (304)
Q Consensus       178 ~~~~~~~~~~l~~~~~dg-------~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-----~~~dg~i~v~  245 (304)
                      .+.|+|....+++=|.+|       +|.+.+..... ...+... .....+.-=-|.|||..|.-     ++.+..|.-+
T Consensus       192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~  269 (386)
T PF14583_consen  192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRR-MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY  269 (386)
T ss_dssp             EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred             CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecC-CCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence            789999665555544332       44444533322 2222211 12334444568999987653     2335567888


Q ss_pred             ecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585          246 SVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       246 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      |+.+++......  ..+...+--++||++++-=+.|
T Consensus       270 d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  270 DPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             -TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred             CCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence            888876533222  1234456667899888654443

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.01  E-value=0.001  Score=57.39  Aligned_cols=105  Identities=14%  Similarity=0.161  Sum_probs=61.5

Q ss_pred             ceEEEEecCCcEEEEeeCC------------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEE
Q 036585          176 ANVVKFSNDGRLMLLTTME------------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVH  243 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  243 (304)
                      .+.-.|+|+|+.+++....            +.+.+.++..++...  .    ....|..+.|||||..++... ++.|+
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~----~~g~Issl~wSpDG~RiA~i~-~g~v~  471 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--R----VPGPISELQLSRDGVRAAMII-GGKVY  471 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--c----cCCCcCeEEECCCCCEEEEEE-CCEEE
Confidence            5667888888777666432            233333333332222  1    245799999999999988765 47777


Q ss_pred             E---EecCCCce-e---eee-eccCCCCceEEeCCCCcEEEEecCc-eEEecc
Q 036585          244 A---WSVRSGKE-V---ASW-MSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIP  287 (304)
Q Consensus       244 v---~d~~~~~~-~---~~~-~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~  287 (304)
                      +   -....++. +   ..+ ..-...+.++.|.+++.+++..... ..+|.+
T Consensus       472 Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v  524 (591)
T PRK13616        472 LAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYV  524 (591)
T ss_pred             EEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEE
Confidence            7   44344441 1   112 2233346889999999866443322 445544

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.99  E-value=0.01  Score=52.65  Aligned_cols=263  Identities=10%  Similarity=0.101  Sum_probs=137.0

Q ss_pred             ecccCcEEEEeeCCCeEEEEecCCcceeeeecc--cccceeEEEEccC--CC----eEEEEecCCCCCceEEE-EccCce
Q 036585           23 SMEVGIYLVTASDDESIRLYDVTAATCLKTINS--KKYGVDLVCFTSH--PT----TVIYSSKNGWDESLRLL-SLHDNK   93 (304)
Q Consensus        23 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~--~~----~l~~~~~~~~d~~i~vw-d~~~~~   93 (304)
                      +..+...++.++.++.+...++..+. ++....  -...|.|+.++|-  ++    .+++|.-   +..+.+. -..+..
T Consensus       495 ~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~W---s~~~~~l~~~pd~~  570 (1096)
T KOG1897|consen  495 VSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLW---SDISMILTFLPDLI  570 (1096)
T ss_pred             EeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEee---cceEEEEEECCCcc
Confidence            33344455555555555555555443 222221  2357999999974  22    4566654   4444333 333333


Q ss_pred             eeeec--c--cccccEEEEEEcCCCCEEEEcccCCeEEEEeCC--cceeec--------------eE---------EEec
Q 036585           94 YSRYF--K--GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR--AEKCQG--------------LL---------RVQG  144 (304)
Q Consensus        94 ~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~--------------~~---------~~~~  144 (304)
                      .+...  .  .-...|.-..+-.+..+|+++..||.+..|-+.  ++....              .+         ....
T Consensus       571 ~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sd  650 (1096)
T KOG1897|consen  571 LITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSD  650 (1096)
T ss_pred             eeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCC
Confidence            22221  1  112345555565668899999999988766543  322111              11         1112


Q ss_pred             cceeEecCCCeEE-------------------------EecCCCeEEEEecC----------CCCCceEEEEecCCcEEE
Q 036585          145 RPAAAYDDQGLVF-------------------------GYEKGPLDIFSVGG----------DISDANVVKFSNDGRLML  189 (304)
Q Consensus       145 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~  189 (304)
                      .+.+.+..++.++                         ....+.+.+..+..          -......+++.+....+.
T Consensus       651 rP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~  730 (1096)
T KOG1897|consen  651 RPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFG  730 (1096)
T ss_pred             CCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEE
Confidence            2222232222222                         22233333333321          123345567766444444


Q ss_pred             EeeCC--------------CeEEEEEcCCCceeEEEEeCC-CCCCcceEEEEcCC-CcEEEEec----------CCCcEE
Q 036585          190 LTTME--------------GHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASFSPE-GMFVISGS----------GDGSVH  243 (304)
Q Consensus       190 ~~~~d--------------g~i~~~d~~~~~~~~~~~~~~-~~~~~i~~~~~s~~-~~~l~~~~----------~dg~i~  243 (304)
                      +.+..              ..++++|-++-+.+...+... .....+.++.|..| +.++++|.          ..|.|.
T Consensus       731 v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIi  810 (1096)
T KOG1897|consen  731 VLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRII  810 (1096)
T ss_pred             EEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEE
Confidence            44321              136777777766665554321 11224555668887 67777775          247899


Q ss_pred             EEecCCCceeeeeecc--CCCCceEEeCCCCcEEEEecCceEEeccCCc
Q 036585          244 AWSVRSGKEVASWMSF--DTEPPVIKWAPGSLMFVTGSSELSFWIPDLS  290 (304)
Q Consensus       244 v~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~  290 (304)
                      +|.....+.++....+  .+.+.++.- -+|+++|.-+..+++|.|..+
T Consensus       811 vfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In~~vrLye~t~~  858 (1096)
T KOG1897|consen  811 VFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGINQSVRLYEWTTE  858 (1096)
T ss_pred             EEEEecCCceeeeeeeeeccceeehhh-hCCeEEEecCcEEEEEEcccc
Confidence            9988774444444222  344444432 278888888888999999877

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.98  E-value=0.0082  Score=51.44  Aligned_cols=62  Identities=16%  Similarity=0.223  Sum_probs=43.4

Q ss_pred             CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeecc
Q 036585          194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF  259 (304)
Q Consensus       194 dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  259 (304)
                      -|.|.-+|+.+++...+.......   .... +.-.+..++.++.+|.++.+|.++|+.+.+.+..
T Consensus       440 ~g~l~AiD~~tGk~~W~~~~~~p~---~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       440 MGSLIAWDPITGKIVWEHKEDFPL---WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             ceeEEEEeCCCCceeeEecCCCCC---CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            367888999999888877632111   1111 1224557778888999999999999998877543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.95  E-value=0.0016  Score=42.06  Aligned_cols=65  Identities=18%  Similarity=0.266  Sum_probs=48.0

Q ss_pred             eeEEEEcc---CC-CeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeC
Q 036585           60 VDLVCFTS---HP-TTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQ  131 (304)
Q Consensus        60 v~~~~~~~---~~-~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  131 (304)
                      |++|++..   +| +.|++|+.   |..|++|+-.  +.+..+. -++.|+++.-... ..|+.+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~---D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSD---DFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecC---CcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            55666554   32 57888888   9999999754  4555665 4567788877765 57999999999999974

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.95  E-value=0.0016  Score=42.06  Aligned_cols=100  Identities=18%  Similarity=0.224  Sum_probs=64.9

Q ss_pred             EEEEEEcC---CC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEE
Q 036585          105 VVLLSLCS---SK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVK  180 (304)
Q Consensus       105 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  180 (304)
                      |.++++..   +| +.|++|+.|..|++|+-+  ..+..+.                              ....++.+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~------------------------------e~~~v~~L~   49 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT------------------------------ETDKVTSLC   49 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe------------------------------cccceEEEE
Confidence            55666654   32 589999999999999744  3333332                              224566676


Q ss_pred             EecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CC---cEEEEecCCCcEE
Q 036585          181 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EG---MFVISGSGDGSVH  243 (304)
Q Consensus       181 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~---~~l~~~~~dg~i~  243 (304)
                      -... ..|+.+..+|+|-+|+-  .+.+.+.+    .+..++++++.. ++   .-|++|=.+|.|-
T Consensus        50 ~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiK----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   50 SLGG-GRFAYALANGTVGVYDR--SQRLWRIK----SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EcCC-CEEEEEecCCEEEEEeC--cceeeeec----cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            6655 45899999999999984  33344444    334466665544 32   3588887888764

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=3.2e-05  Score=67.92  Aligned_cols=106  Identities=18%  Similarity=0.307  Sum_probs=81.9

Q ss_pred             CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCC
Q 036585          184 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP  263 (304)
Q Consensus       184 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i  263 (304)
                      .+..++.|+..|.+...|+... . ..+.......++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-L-~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-L-GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-c-chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence            4567889999999999997653 1 1122222357899999999999999999999999999999999999998887777


Q ss_pred             ceEE---eCCCCcEEEEecCceEEeccCCcc
Q 036585          264 PVIK---WAPGSLMFVTGSSELSFWIPDLSK  291 (304)
Q Consensus       264 ~~~~---~~~~~~~l~s~~~d~~iw~~~~~~  291 (304)
                      +++-   +..++..+.++...+.+|....++
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gsf~~lv~nk  206 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGSFWKLVFNK  206 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCceEEEEech
Confidence            6654   445666777777668899776554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=0.00035  Score=61.73  Aligned_cols=102  Identities=16%  Similarity=0.217  Sum_probs=76.0

Q ss_pred             cCcEEEEeeCCCeEEEEecCCc-ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc
Q 036585           26 VGIYLVTASDDESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR  104 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  104 (304)
                      .+-.++.|+..|.+...|.... .+...=..-.++|.+++|+.+|..++.|-.   +|.|.+||+..++..+.+..|..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~---~G~V~v~D~~~~k~l~~i~e~~ap  174 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG---DGHVTVWDMHRAKILKVITEHGAP  174 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC---CCcEEEEEccCCcceeeeeecCCc
Confidence            3567888888888888886642 111222223579999999999999999998   999999999999998888877776


Q ss_pred             EEEEEEc---CCCCEEEEcccCCeEEEEeCC
Q 036585          105 VVLLSLC---SSKDCFISGSLDRTVLLWDQR  132 (304)
Q Consensus       105 v~~~~~~---~~~~~l~~~~~dg~i~iwd~~  132 (304)
                      .+++-++   .++..++++...|.  +|.+.
T Consensus       175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            6555443   45667888887776  56543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.92  E-value=0.00055  Score=55.89  Aligned_cols=144  Identities=16%  Similarity=0.208  Sum_probs=85.7

Q ss_pred             cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec-eE-EEecc----ceeEecCCCeEEEe--------cCCCeEEEEe
Q 036585          104 RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LL-RVQGR----PAAAYDDQGLVFGY--------EKGPLDIFSV  169 (304)
Q Consensus       104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~-~~~~~----~~~~~~~~~~~~~~--------~~~~~~~~~~  169 (304)
                      .|+.+.|.++...|+++...|.|.+|.....+... .. .....    ..-.-+..+.+...        ..+-....-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47899999998899999999999999876554332 00 00000    00000112222211        1133344445


Q ss_pred             cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC-----CCCCcceEEEEcC-----CC---cEEEEe
Q 036585          170 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-----VSRNSTLEASFSP-----EG---MFVISG  236 (304)
Q Consensus       170 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-----~~~~~i~~~~~s~-----~~---~~l~~~  236 (304)
                      +...++|++++.|.-| ++++|..+|.+.|.|+|....+..-....     .....++++.|+.     |+   -.|++|
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            5568999999998555 89999999999999999888877754322     1334677888873     33   478899


Q ss_pred             cCCCcEEEEecC
Q 036585          237 SGDGSVHAWSVR  248 (304)
Q Consensus       237 ~~dg~i~v~d~~  248 (304)
                      ...|.+.+|.+-
T Consensus       162 Tn~G~v~~fkIl  173 (395)
T PF08596_consen  162 TNSGNVLTFKIL  173 (395)
T ss_dssp             ETTSEEEEEEEE
T ss_pred             eCCCCEEEEEEe
Confidence            999999999874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.82  E-value=0.0075  Score=45.79  Aligned_cols=194  Identities=14%  Similarity=0.071  Sum_probs=120.0

Q ss_pred             eeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccc-ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec
Q 036585           60 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH-DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  138 (304)
Q Consensus        60 v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  138 (304)
                      -..+.|..++..+-+.+.-| ...|+.+|+.+++......-.. ---..+.... ++...-.-.++...+||..+.+...
T Consensus        47 TQGL~~~~~g~LyESTG~yG-~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYG-QSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTT-EEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecCCCEEEEeCCCCC-cEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEE
Confidence            45677767777777766533 6689999999998665443221 1223344443 3344445578999999999888777


Q ss_pred             eEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC--
Q 036585          139 LLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--  216 (304)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--  216 (304)
                      .+...+                              .=..++  .+++.|+.+.....++++|..+.+...++.....  
T Consensus       125 ~~~y~~------------------------------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~  172 (264)
T PF05096_consen  125 TFPYPG------------------------------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR  172 (264)
T ss_dssp             EEE-SS------------------------------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE
T ss_pred             EEecCC------------------------------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCE
Confidence            665331                              223344  5777888888888999999988888777764311  


Q ss_pred             CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec------------c---CCCCceEEeCCCCcEEEEecCc
Q 036585          217 SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS------------F---DTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       217 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~------------~---~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      .-..++.+.|- +|...|=.=....|...|..+|+....+..            +   ..-.+.|+|.|....|...+..
T Consensus       173 pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  173 PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            12245556664 665555454556788889999987665510            1   2347899999988777777776


Q ss_pred             -eEEeccC
Q 036585          282 -LSFWIPD  288 (304)
Q Consensus       282 -~~iw~~~  288 (304)
                       =++|.+.
T Consensus       252 Wp~lyeV~  259 (264)
T PF05096_consen  252 WPKLYEVK  259 (264)
T ss_dssp             -SEEEEEE
T ss_pred             CCceEEEE
Confidence             5555544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00320 WD40 WD40 repeats

Probab=97.81  E-value=6.8e-05  Score=38.33  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=33.5

Q ss_pred             cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585           47 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   88 (304)
Q Consensus        47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd   88 (304)
                      +++...+..|...+.++.|.+++..+++++.   |+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASD---DGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecC---CCeEEEcC
Confidence            3456667788889999999999999999988   99999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.81  E-value=0.0083  Score=45.80  Aligned_cols=201  Identities=8%  Similarity=0.067  Sum_probs=122.4

Q ss_pred             ecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccc-cccEEEEEEcCCCCEEEEcccCCeEEEEeC
Q 036585           53 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH-HDRVVLLSLCSSKDCFISGSLDRTVLLWDQ  131 (304)
Q Consensus        53 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  131 (304)
                      +.+-...+.++.|+|+.+.|++...   ...-.|+=-..|+.++++.-. -.....+.+..++++.++--.++.+.++.+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence            3444556999999999999999986   555555555667777765421 223466788888888888888899888877


Q ss_pred             CcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEE
Q 036585          132 RAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  211 (304)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  211 (304)
                      .............                   +.+-.....+.....++|+|....|.++-...-+.+|....+......
T Consensus       158 d~~t~~~~~~~~~-------------------i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~  218 (316)
T COG3204         158 DADTTVISAKVQK-------------------IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV  218 (316)
T ss_pred             cCCccEEeccceE-------------------EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccc
Confidence            7654433322110                   001111122456778999999988888888777777776543311111


Q ss_pred             EeCCC-------CCCcceEEEEcC-CCcEEEEecCCCcEEEEecCCCceeeeeeccC---------CCCceEEeCCCCcE
Q 036585          212 NVKPV-------SRNSTLEASFSP-EGMFVISGSGDGSVHAWSVRSGKEVASWMSFD---------TEPPVIKWAPGSLM  274 (304)
Q Consensus       212 ~~~~~-------~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~  274 (304)
                      .....       .-..+.++.|++ .+..|+-+.+++.+.-.|. .++.+..+.-+.         ...-.++..++|..
T Consensus       219 ~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l  297 (316)
T COG3204         219 HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL  297 (316)
T ss_pred             ccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence            10000       123466788887 4556666777777777775 455444442221         12345666666654


Q ss_pred             EE
Q 036585          275 FV  276 (304)
Q Consensus       275 l~  276 (304)
                      -+
T Consensus       298 YI  299 (316)
T COG3204         298 YI  299 (316)
T ss_pred             EE
Confidence            33

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.80  E-value=0.0082  Score=45.58  Aligned_cols=184  Identities=13%  Similarity=0.120  Sum_probs=111.6

Q ss_pred             EeecccCcEEEEeeCCC--eEEEEecCCcceeeeecccc-cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           21 LQSMEVGIYLVTASDDE--SIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      +.+..+|.++-+.+.-|  .|+.+|+.+++......-.. .--..++..  +..|.--+-.  ++...+||..+-+.+.+
T Consensus        50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk--~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWK--EGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESS--SSEEEEEETTTTEEEEE
T ss_pred             EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEec--CCeEEEEccccceEEEE
Confidence            34456677888887766  69999999998776554322 111223333  3333333332  89999999999888887


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      +. ..+.=+.++  .+++.|+.+.....++++|..+.+....+......                        .....++
T Consensus       126 ~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g------------------------~pv~~LN  178 (264)
T PF05096_consen  126 FP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG------------------------RPVSNLN  178 (264)
T ss_dssp             EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT------------------------EE---EE
T ss_pred             Ee-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC------------------------EECCCcE
Confidence            76 344556666  45666777766788999999887776665533111                        1123566


Q ss_pred             EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC---------C---CCCCcceEEEEcCCCcE-EEEe
Q 036585          178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK---------P---VSRNSTLEASFSPEGMF-VISG  236 (304)
Q Consensus       178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---------~---~~~~~i~~~~~s~~~~~-l~~~  236 (304)
                      .+.|- +|...|=.=....|...|..+|+....+...         .   ....-.+.+|++|..+. ++||
T Consensus       179 ELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  179 ELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            67775 5665555555678889999999988877521         0   11356789999986655 4455

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.79  E-value=0.0048  Score=51.10  Aligned_cols=51  Identities=20%  Similarity=0.173  Sum_probs=36.9

Q ss_pred             ceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce
Q 036585           83 SLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK  135 (304)
Q Consensus        83 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  135 (304)
                      .|++|+.. |+.+..+.-..+.+.++.|..+. .|++...||.+++||+....
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce
Confidence            58888865 44555544333899999998855 56667789999999986433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.79  E-value=0.01  Score=46.43  Aligned_cols=158  Identities=15%  Similarity=0.176  Sum_probs=90.3

Q ss_pred             cCCCeEEEEecCCCCCceEEEEccC-ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc
Q 036585           67 SHPTTVIYSSKNGWDESLRLLSLHD-NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR  145 (304)
Q Consensus        67 ~~~~~l~~~~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  145 (304)
                      ..++.|+.|+.   +| +.+++... .+.....  +...|..+...|+-+.+++-+ |+.++++++..-...........
T Consensus         5 ~~~~~L~vGt~---~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    5 SWGDRLLVGTE---DG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             cCCCEEEEEEC---CC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence            46788999986   77 99999833 3333332  233499999999877766655 49999999876554432110000


Q ss_pred             ceeEecCCCeEEEecCCCeEEEEecCCCCCceEEE--EecCCcEEEEeeCCCeEEEEEcCCC-----ceeEEEEeCCCCC
Q 036585          146 PAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVK--FSNDGRLMLLTTMEGHIHVLDSFRG-----TLLSTYNVKPVSR  218 (304)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~~~~  218 (304)
                      ....   .            ....-.....+..++  -...+...++.....+|.+|.....     +..+++.    ..
T Consensus        78 ~~~~---~------------~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~----lp  138 (275)
T PF00780_consen   78 PKSR---S------------LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS----LP  138 (275)
T ss_pred             cccc---c------------ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE----cC
Confidence            0000   0            000000112233333  1123333344444458888887653     3455555    45


Q ss_pred             CcceEEEEcCCCcEEEEecCCCcEEEEecCCCcee
Q 036585          219 NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV  253 (304)
Q Consensus       219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~  253 (304)
                      ..+..++|.  ++.++.|..++ ..+.|+.++...
T Consensus       139 ~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~  170 (275)
T PF00780_consen  139 DPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPS  170 (275)
T ss_pred             CCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCce
Confidence            788889998  55677776554 888899876653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.78  E-value=0.0065  Score=48.73  Aligned_cols=220  Identities=14%  Similarity=0.122  Sum_probs=95.1

Q ss_pred             ecCCcceeeeeccccc-----ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585           43 DVTAATCLKTINSKKY-----GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF  117 (304)
Q Consensus        43 ~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  117 (304)
                      |..||..+..|..+..     -.+.=+|.++|+.|+.++.......+.+.|+.+++..+.-.+.........++|+.+.+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            5667777776654332     23344778899888887764335677788999888665444322323356677888877


Q ss_pred             EEcccCCeEEEEeCCcceeeceEEEecccee--E--ecCCCe-EEEecCCCeEEEEecCCCCCceEEE-EecCCcEEEEe
Q 036585          118 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA--A--YDDQGL-VFGYEKGPLDIFSVGGDISDANVVK-FSNDGRLMLLT  191 (304)
Q Consensus       118 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~--~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~  191 (304)
                      +.......++-.|+++.+....+..+.....  .  .+.++. +++..       ..+.   ....+. +.-- +.+.-+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e-------~~~~---d~~~l~~~~~f-~e~~~a  164 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIE-------ISRE---DWKPLTKWKGF-REFYEA  164 (386)
T ss_dssp             EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEE-------EEGG---G-----SHHHH-HHHHHC
T ss_pred             EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEE-------Eeeh---hccCccccHHH-HHHHhh
Confidence            6655567889999999877666554433211  1  111111 11100       0000   000000 0000 001112


Q ss_pred             eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcE-EEEec---CCC-cEEEEecCC-CceeeeeeccCC--CC
Q 036585          192 TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF-VISGS---GDG-SVHAWSVRS-GKEVASWMSFDT--EP  263 (304)
Q Consensus       192 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~---~dg-~i~v~d~~~-~~~~~~~~~~~~--~i  263 (304)
                      --...|...|+.+|+....+.    ....+.-+.|||.... |+-|-   .+. .-|||-+++ +.....+..+..  .+
T Consensus       165 ~p~~~i~~idl~tG~~~~v~~----~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~  240 (386)
T PF14583_consen  165 RPHCRIFTIDLKTGERKVVFE----DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESV  240 (386)
T ss_dssp             ---EEEEEEETTT--EEEEEE----ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEE
T ss_pred             CCCceEEEEECCCCceeEEEe----cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccc
Confidence            223467788999998777776    5567778999995544 44442   222 125665543 333333332321  12


Q ss_pred             ceEEeCCCCcEEEE
Q 036585          264 PVIKWAPGSLMFVT  277 (304)
Q Consensus       264 ~~~~~~~~~~~l~s  277 (304)
                      ..=-|.|||..+.-
T Consensus       241 gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  241 GHEFWVPDGSTIWY  254 (386)
T ss_dssp             EEEEE-TTSS-EEE
T ss_pred             ccccccCCCCEEEE
Confidence            22237888876543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.75  E-value=0.015  Score=47.25  Aligned_cols=227  Identities=12%  Similarity=0.109  Sum_probs=106.0

Q ss_pred             CcEEEEee-CCCeEEEEecCC----cceeeeecc---cc----cceeEEEEccCCCeEEEEecC---CCCCceEEEEccC
Q 036585           27 GIYLVTAS-DDESIRLYDVTA----ATCLKTINS---KK----YGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLHD   91 (304)
Q Consensus        27 ~~~l~~~~-~d~~i~vw~~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~~~~~---~~d~~i~vwd~~~   91 (304)
                      .++|+..+ ..+.|.|.|+.+    .++.+.+..   +.    .....+-.-|+|..++++-.+   +..|.+.++|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            56777666 677899999874    344444442   11    233445556788888876431   1246678888877


Q ss_pred             ceeeeecccc---cccEEEEEEcCCCCEEEEccc--------------------CCeEEEEeCCcceeeceEEEecccee
Q 036585           92 NKYSRYFKGH---HDRVVLLSLCSSKDCFISGSL--------------------DRTVLLWDQRAEKCQGLLRVQGRPAA  148 (304)
Q Consensus        92 ~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~  148 (304)
                      .+........   ...-+.+-|.|..+.++|...                    ..++.+||+.+.+.++.+....... 
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~-  245 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ-  245 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE-
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC-
Confidence            6665555432   223466777888888887642                    4579999999999988887543211 


Q ss_pred             EecCCCeEEEecCCCeEEEEecCCCCCceEEEEe--cCCcE-EEEeeCCCeEEEEEc-CCCceeE--EEEeCCC------
Q 036585          149 AYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS--NDGRL-MLLTTMEGHIHVLDS-FRGTLLS--TYNVKPV------  216 (304)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-l~~~~~dg~i~~~d~-~~~~~~~--~~~~~~~------  216 (304)
                                                ....+.|.  |+..+ ++.+...++|..|-- ..++...  .+.....      
T Consensus       246 --------------------------~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  246 --------------------------MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             --------------------------EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             --------------------------ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence                                      12334553  33333 333334455555543 4443221  1221100      


Q ss_pred             ---C-------CCcceEEEEcCCCcEEEEec-CCCcEEEEecCCCc---eeeeee-c---------------cCCCCceE
Q 036585          217 ---S-------RNSTLEASFSPEGMFVISGS-GDGSVHAWSVRSGK---EVASWM-S---------------FDTEPPVI  266 (304)
Q Consensus       217 ---~-------~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~---~~~~~~-~---------------~~~~i~~~  266 (304)
                         .       ..-++.+.+|.|.++|+..+ ..|.|+.||+.+..   ++.++. +               -.+...-+
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv  379 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV  379 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence               0       24578999999999998776 58999999997643   232221 0               11233567


Q ss_pred             EeCCCCcEEEEecC
Q 036585          267 KWAPGSLMFVTGSS  280 (304)
Q Consensus       267 ~~~~~~~~l~s~~~  280 (304)
                      ..|-||+.|+...+
T Consensus       380 qlS~DGkRlYvTnS  393 (461)
T PF05694_consen  380 QLSLDGKRLYVTNS  393 (461)
T ss_dssp             EE-TTSSEEEEE--
T ss_pred             EEccCCeEEEEEee
Confidence            78888887776543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.73  E-value=0.013  Score=50.74  Aligned_cols=228  Identities=14%  Similarity=0.172  Sum_probs=117.4

Q ss_pred             ccCcEEEEeeCCC------eEEEEecCCcceee--eecccccceeEEEEccCCCeEEEEecC-C--CCCceEEEEccCce
Q 036585           25 EVGIYLVTASDDE------SIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKN-G--WDESLRLLSLHDNK   93 (304)
Q Consensus        25 ~~~~~l~~~~~d~------~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~-~--~d~~i~vwd~~~~~   93 (304)
                      ..+.+++.|+.++      .+..+|..+++-..  .+.... .-.+++.. ++...++|+.+ +  .-.++..||..+++
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r-~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR-CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc-ccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            3466778888773      57788887764332  222222 22233333 55677777762 1  11567788888776


Q ss_pred             eeee--cccccccEEEEEEcCCCCEEEEcccCCe-----EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585           94 YSRY--FKGHHDRVVLLSLCSSKDCFISGSLDRT-----VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI  166 (304)
Q Consensus        94 ~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (304)
                      -...  +...........  -+|...++|+.||.     +-.||.++.+....-...                       
T Consensus       361 W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~-----------------------  415 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML-----------------------  415 (571)
T ss_pred             eeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCC-----------------------
Confidence            4331  211111111111  26778888888864     556666554432211100                       


Q ss_pred             EEecCCCCCceE-EEEecCCcEEEEeeCCC------eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585          167 FSVGGDISDANV-VKFSNDGRLMLLTTMEG------HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD  239 (304)
Q Consensus       167 ~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  239 (304)
                             ..... -...-+|+..++|+.++      .+..||..+++....-... ....... ++ .-++...+.|+.|
T Consensus       416 -------~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~-~~R~~~g-~a-~~~~~iYvvGG~~  485 (571)
T KOG4441|consen  416 -------TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN-TRRSGFG-VA-VLNGKIYVVGGFD  485 (571)
T ss_pred             -------cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc-cccccce-EE-EECCEEEEECCcc
Confidence                   01111 11223677777777554      5788998776654332211 1111122 22 2367788888877


Q ss_pred             Cc-----EEEEecCCCce--eeeeeccCCCCceEEeCCCCcEEEEecCc-------eEEeccCCcc
Q 036585          240 GS-----VHAWSVRSGKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE-------LSFWIPDLSK  291 (304)
Q Consensus       240 g~-----i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-------~~iw~~~~~~  291 (304)
                      +.     |..||..+.+-  +..+......+....+  ++...+.|+.|       +..|+...++
T Consensus       486 ~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  486 GTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             CCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence            63     77788876543  2222222222222222  56677777766       6667666554

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.0015  Score=53.61  Aligned_cols=150  Identities=14%  Similarity=0.232  Sum_probs=96.4

Q ss_pred             cCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCC--E-----EEEcccCCeEEEEeCCcceeece
Q 036585           67 SHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKD--C-----FISGSLDRTVLLWDQRAEKCQGL  139 (304)
Q Consensus        67 ~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-----l~~~~~dg~i~iwd~~~~~~~~~  139 (304)
                      .+.+.|+.....  ...++-.|++.|+.+...+-+.+ |.-+.+.|+.+  .     -+.|-.|..|.-||+|-.... .
T Consensus       343 ~dsnlil~~~~~--~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-k  418 (644)
T KOG2395|consen  343 ADSNLILMDGGE--QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-K  418 (644)
T ss_pred             cccceEeeCCCC--cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-e
Confidence            344444444432  67888889999999999886666 77777887653  2     234556778888998732221 1


Q ss_pred             EEE-eccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCC
Q 036585          140 LRV-QGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  218 (304)
Q Consensus       140 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  218 (304)
                      +.. +....                       .......|++-..+| ++++|+.+|.|++||- .+...++.-  ++..
T Consensus       419 l~~~q~kqy-----------------------~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAl--PgLG  471 (644)
T KOG2395|consen  419 LAVVQSKQY-----------------------STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTAL--PGLG  471 (644)
T ss_pred             eeeeecccc-----------------------ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcc--cccC
Confidence            110 00000                       011234455555555 6999999999999995 554444332  2678


Q ss_pred             CcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          219 NSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                      .+|..+..+.+|++|++.+ +..+.+.++.
T Consensus       472 ~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  472 DAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             CceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            8999999999999988775 5567776653

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.68  E-value=0.00012  Score=53.12  Aligned_cols=136  Identities=16%  Similarity=0.154  Sum_probs=76.0

Q ss_pred             CCceEEEEccCcee-eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEe
Q 036585           81 DESLRLLSLHDNKY-SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGY  159 (304)
Q Consensus        81 d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (304)
                      |+.|+-+++..-+. .+....|...   .....-+..+++|+.+|.|.+|+.............                
T Consensus        39 ~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s----------------   99 (238)
T KOG2444|consen   39 DGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS----------------   99 (238)
T ss_pred             Ccccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhc----------------
Confidence            88888777764332 1111112222   111123457899999999999987622111111000                


Q ss_pred             cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCC-CcceEEEEcCCCcEEEEe--
Q 036585          160 EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR-NSTLEASFSPEGMFVISG--  236 (304)
Q Consensus       160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~--  236 (304)
                                 .......-+.--.++.+..+++.+|.|+.|+..-.+.+....   .|. .+...+..+..++.++.+  
T Consensus       100 -----------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~e~~ivv~sd~~i~~a~~  165 (238)
T KOG2444|consen  100 -----------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESGEELIVVGSDEFLKIADT  165 (238)
T ss_pred             -----------ccccceeccccccccceeEEeccCCceeeeccccCceeeeec---cccCCCcceeEEecCCceEEeecc
Confidence                       000111122223355688899999999999998777766655   344 444445555555566666  


Q ss_pred             cCCCcEEEEecCC
Q 036585          237 SGDGSVHAWSVRS  249 (304)
Q Consensus       237 ~~dg~i~v~d~~~  249 (304)
                      +.|..++.|++..
T Consensus       166 S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  166 SHDRVLKKWNVEK  178 (238)
T ss_pred             ccchhhhhcchhh
Confidence            6666667776643

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.66  E-value=0.015  Score=44.72  Aligned_cols=146  Identities=18%  Similarity=0.122  Sum_probs=88.5

Q ss_pred             cEEEEEEcCCCCEEEEcc---cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEE
Q 036585          104 RVVLLSLCSSKDCFISGS---LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVK  180 (304)
Q Consensus       104 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  180 (304)
                      .+.+.+++++++.++...   ....++++....  ......                              ....+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~------------------------------~g~~l~~PS   72 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL------------------------------TGGSLTRPS   72 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec------------------------------cCCcccccc
Confidence            688999999998777655   333455554332  221111                              112566778


Q ss_pred             EecCCcEEEEeeCCCeEEEEE-cCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec---CCCcEEEEecC---CCc--
Q 036585          181 FSNDGRLMLLTTMEGHIHVLD-SFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVHAWSVR---SGK--  251 (304)
Q Consensus       181 ~~~~~~~l~~~~~dg~i~~~d-~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~v~d~~---~~~--  251 (304)
                      |++++...++...+...+++. ..+++..............|..+.+||||..+|...   .++.|.+--+.   .+.  
T Consensus        73 ~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~  152 (253)
T PF10647_consen   73 WDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR  152 (253)
T ss_pred             ccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc
Confidence            999987777766666666663 333333222211111222899999999999887664   35677776543   231  


Q ss_pred             ----eeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585          252 ----EVASWMSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       252 ----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                          ++.........++.+.|.+++.+++.+...
T Consensus       153 ~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~  186 (253)
T PF10647_consen  153 RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA  186 (253)
T ss_pred             eeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence                112222335678999999999888777655

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.0017  Score=53.30  Aligned_cols=139  Identities=12%  Similarity=0.163  Sum_probs=88.7

Q ss_pred             EEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCc-------EEE
Q 036585          117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGR-------LML  189 (304)
Q Consensus       117 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~  189 (304)
                      |.++.....++-.|++.++.+........                              |+-+.+.|+.+       .-+
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d------------------------------i~mv~~t~d~K~~Ql~~e~Tl  398 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD------------------------------INMVDITPDFKFAQLTSEQTL  398 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC------------------------------cceeeccCCcchhcccccccE
Confidence            33444556677778888887766654322                              44445555432       123


Q ss_pred             EeeCCCeEEEEEcCCCce--eEEEEeCC-CCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce-eeeeeccCCCCce
Q 036585          190 LTTMEGHIHVLDSFRGTL--LSTYNVKP-VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE-VASWMSFDTEPPV  265 (304)
Q Consensus       190 ~~~~dg~i~~~d~~~~~~--~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~  265 (304)
                      +|-.+..|.-||.+-...  +...+.+. .......|.+-..+| ++++|+.+|.|++||- .+.. ...+++...+|..
T Consensus       399 vGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~h  476 (644)
T KOG2395|consen  399 VGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKH  476 (644)
T ss_pred             EeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceee
Confidence            466677889999873222  11111110 123344555554455 8999999999999996 4444 4456888999999


Q ss_pred             EEeCCCCcEEEEecCc-eEEecc
Q 036585          266 IKWAPGSLMFVTGSSE-LSFWIP  287 (304)
Q Consensus       266 ~~~~~~~~~l~s~~~d-~~iw~~  287 (304)
                      +..+.+|++++..+.. +.+-+.
T Consensus       477 VdvtadGKwil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  477 VDVTADGKWILATCKTYLLLIDT  499 (644)
T ss_pred             EEeeccCcEEEEecccEEEEEEE
Confidence            9999999999888877 555444

>PHA02713 hypothetical protein; Provisional

Probab=97.66  E-value=0.0047  Score=53.35  Aligned_cols=65  Identities=3%  Similarity=-0.005  Sum_probs=38.3

Q ss_pred             CCcEEEEeeCC------CeEEEEEcCC-CceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC--cEEEEecCCCc
Q 036585          184 DGRLMLLTTME------GHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--SVHAWSVRSGK  251 (304)
Q Consensus       184 ~~~~l~~~~~d------g~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~v~d~~~~~  251 (304)
                      +++..++|+.+      ..+..||..+ .+....-.. +........+.+  +++..++|+.++  .+..||..+.+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-CcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            56766777654      2467899887 454322221 112222222333  778888998888  67778877654

>PHA02713 hypothetical protein; Provisional

Probab=97.65  E-value=0.014  Score=50.60  Aligned_cols=91  Identities=7%  Similarity=-0.060  Sum_probs=45.9

Q ss_pred             eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC------CcEEEEecCC-Cc--eeeeeeccCCCCceE
Q 036585          196 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD------GSVHAWSVRS-GK--EVASWMSFDTEPPVI  266 (304)
Q Consensus       196 ~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~v~d~~~-~~--~~~~~~~~~~~i~~~  266 (304)
                      .+..||..+.+....-... ....... + ..-+++..+.|+.+      ..+..||..+ .+  .+..++........+
T Consensus       433 ~ve~YDP~td~W~~v~~m~-~~r~~~~-~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~  509 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFW-TGTIRPG-V-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI  509 (557)
T ss_pred             eEEEECCCCCeEeecCCCC-cccccCc-E-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence            5788998776554322211 1111111 2 22366777777654      2467899876 32  233333222222223


Q ss_pred             EeCCCCcEEEEecCc----eEEeccCCcc
Q 036585          267 KWAPGSLMFVTGSSE----LSFWIPDLSK  291 (304)
Q Consensus       267 ~~~~~~~~l~s~~~d----~~iw~~~~~~  291 (304)
                      .+  +++..++|+.+    +..|++..++
T Consensus       510 ~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        510 LH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             EE--CCEEEEEeeecceeehhhcCccccc
Confidence            33  67788888766    4555555443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.55  E-value=0.0068  Score=45.99  Aligned_cols=197  Identities=14%  Similarity=0.134  Sum_probs=107.9

Q ss_pred             eecccCcEEEEeeCC-----CeEEEEecCCc-ceeeeecccccceeEEEEccCCCeEEEEecC---------------CC
Q 036585           22 QSMEVGIYLVTASDD-----ESIRLYDVTAA-TCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---------------GW   80 (304)
Q Consensus        22 ~~~~~~~~l~~~~~d-----~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---------------~~   80 (304)
                      .+++||.+|...-.|     |.|-|||...+ +.+-++..|.-....+.+.+||+.++.+..+               ..
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            578999999877554     67999998743 4566788888888999999999999887531               01


Q ss_pred             CCceEEEEccCceeeee--cc--cccccEEEEEEcCCCCEEEEcccCCe-----EEEEeCCcceeeceEEEeccceeEec
Q 036585           81 DESLRLLSLHDNKYSRY--FK--GHHDRVVLLSLCSSKDCFISGSLDRT-----VLLWDQRAEKCQGLLRVQGRPAAAYD  151 (304)
Q Consensus        81 d~~i~vwd~~~~~~~~~--~~--~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~  151 (304)
                      .-++.+.|..+++.+..  +.  .+.-.|..++.-+||..++.+-..|.     -.+=-...++....+..+.....   
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~---  276 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA---  276 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH---
Confidence            12233444444443322  11  23345666666666654444332221     00000011111111111100000   


Q ss_pred             CCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC
Q 036585          152 DQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  230 (304)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  230 (304)
                                         .-...|-+++.+.+..+++..+- .+...+||..+|..+..-....     ...++  +..
T Consensus       277 -------------------~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-----aaGva--~~~  330 (366)
T COG3490         277 -------------------AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-----AAGVA--AAK  330 (366)
T ss_pred             -------------------HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-----cccce--ecc
Confidence                               01134566777766666655554 4467889999998877655321     11122  333


Q ss_pred             cEEEEecCCCcEEEEec
Q 036585          231 MFVISGSGDGSVHAWSV  247 (304)
Q Consensus       231 ~~l~~~~~dg~i~v~d~  247 (304)
                      .-++..+.+|.+.++.-
T Consensus       331 ~gf~vssg~G~~~~~s~  347 (366)
T COG3490         331 GGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             CceEEecCCceEEeccc
Confidence            44566667888887743

>PHA03098 kelch-like protein; Provisional

Probab=97.46  E-value=0.02  Score=49.52  Aligned_cols=189  Identities=7%  Similarity=0.098  Sum_probs=88.9

Q ss_pred             cCcEEEEeeCCC------eEEEEecCCcceeee--ecccccceeEEEEccCCCeEEEEecCC--CCCceEEEEccCceee
Q 036585           26 VGIYLVTASDDE------SIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNKYS   95 (304)
Q Consensus        26 ~~~~l~~~~~d~------~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd~~~~~~~   95 (304)
                      ++..++.|+.++      .+..||..+.+-...  +.........+  .-++..++.|+..+  .-..+..||..+++..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            456667776543      467788776543221  11111112222  23666777776521  1235777888766432


Q ss_pred             ee--cccccccEEEEEEcCCCCEEEEcccC------CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585           96 RY--FKGHHDRVVLLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF  167 (304)
Q Consensus        96 ~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (304)
                      ..  +...... .+++ .-+++.++.|+.+      ..+..||+.+.+....-..+.                       
T Consensus       372 ~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-----------------------  426 (534)
T PHA03098        372 EEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-----------------------  426 (534)
T ss_pred             eCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-----------------------
Confidence            21  1111111 1112 1256666666632      357778877654332111000                       


Q ss_pred             EecCCCCCceEEEEecCCcEEEEeeCC--------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585          168 SVGGDISDANVVKFSNDGRLMLLTTME--------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD  239 (304)
Q Consensus       168 ~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  239 (304)
                          ..... + +...+++.++.|+.+        ..+.+||..+.+....-... ........+.+  +++.++.|+.+
T Consensus       427 ----~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~  497 (534)
T PHA03098        427 ----SHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN-FPRINASLCIF--NNKIYVVGGDK  497 (534)
T ss_pred             ----cccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC-cccccceEEEE--CCEEEEEcCCc
Confidence                00011 1 122355666666542        23888998876654322111 11111222222  67777777654


Q ss_pred             -----CcEEEEecCCC
Q 036585          240 -----GSVHAWSVRSG  250 (304)
Q Consensus       240 -----g~i~v~d~~~~  250 (304)
                           +.+.+||..+.
T Consensus       498 ~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        498 YEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCcccceeEEEeCCCC
Confidence                 46888887654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.45  E-value=0.044  Score=44.67  Aligned_cols=202  Identities=10%  Similarity=0.091  Sum_probs=94.8

Q ss_pred             eeEeecccCcEEEEeeC------CCeEEEEecCCcceeeeecccc---cceeEEEEccCCCeEEEEecC-----------
Q 036585           19 EILQSMEVGIYLVTASD------DESIRLYDVTAATCLKTINSKK---YGVDLVCFTSHPTTVIYSSKN-----------   78 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~-----------   78 (304)
                      ..+.+.|+|++++++=.      -|-+.+.|-++.+.+.......   .--+.+-+.|..+.+++..-.           
T Consensus       133 HT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~  212 (461)
T PF05694_consen  133 HTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNP  212 (461)
T ss_dssp             EEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---T
T ss_pred             ceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCCh
Confidence            34678899999887632      2458888888777776665432   234567788888888876542           


Q ss_pred             ------CCCCceEEEEccCceeeeeccccc--ccEEEEEEcC--CCCE-EEEcccCCeEEEEeC-Ccceee--ceEEEec
Q 036585           79 ------GWDESLRLLSLHDNKYSRYFKGHH--DRVVLLSLCS--SKDC-FISGSLDRTVLLWDQ-RAEKCQ--GLLRVQG  144 (304)
Q Consensus        79 ------~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~-l~~~~~dg~i~iwd~-~~~~~~--~~~~~~~  144 (304)
                            .+..++.+||+.+.+.++++.--.  .....+.|..  +..+ ++.+....+|..|-- +.++..  ..+....
T Consensus       213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~  292 (461)
T PF05694_consen  213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA  292 (461)
T ss_dssp             TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred             hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence                  146789999999999988876332  2456777764  3444 333333445555433 333221  1121111


Q ss_pred             cceeEecCCCeEEEecCCCeEEEEecC-------CCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCCc---eeEEEEe
Q 036585          145 RPAAAYDDQGLVFGYEKGPLDIFSVGG-------DISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGT---LLSTYNV  213 (304)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~---~~~~~~~  213 (304)
                      ...                 .-|.+..       -..-++.|.+|.|.++|.+++. .|.|+.||+....   .......
T Consensus       293 ~~v-----------------~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~l  355 (461)
T PF05694_consen  293 KKV-----------------EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFL  355 (461)
T ss_dssp             EE-------------------SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-
T ss_pred             ccc-----------------CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEE
Confidence            100                 0000000       1345789999999999988774 8999999997633   2222221


Q ss_pred             CC-------------CCCCcceEEEEcCCCcEEEEec
Q 036585          214 KP-------------VSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       214 ~~-------------~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                      ..             .-.+....+..|.||+.|+..+
T Consensus       356 GG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  356 GGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             CcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            00             0112335678889999888764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.44  E-value=0.031  Score=42.79  Aligned_cols=155  Identities=8%  Similarity=0.089  Sum_probs=100.7

Q ss_pred             ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585           99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV  178 (304)
Q Consensus        99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  178 (304)
                      .+-...+.++.|+|+.+.|++......-.++=...+..+..+...+.                            .....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~----------------------------~DpE~  133 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF----------------------------SDPET  133 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc----------------------------CChhH
Confidence            34455699999999999888888777777776667777777665432                            23455


Q ss_pred             EEEecCCcEEEEeeCCCeEEEEEcCCCceeEEE-----E--eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc
Q 036585          179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY-----N--VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK  251 (304)
Q Consensus       179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-----~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~  251 (304)
                      +.+..+|++.++--.++.+.++.+.........     .  .....+...-.++|+|....|+.+-+..-+.||......
T Consensus       134 Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~  213 (316)
T COG3204         134 IEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP  213 (316)
T ss_pred             eEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence            778888888777777888888877654322211     1  111224567789999998888888777777777765332


Q ss_pred             e---eeeeecc-------CCCCceEEeCCCCcEEEEecCc
Q 036585          252 E---VASWMSF-------DTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       252 ~---~~~~~~~-------~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      .   ......+       -..|.++.|++....|..-|..
T Consensus       214 ~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~E  253 (316)
T COG3204         214 SSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDE  253 (316)
T ss_pred             cccccccccCcccccceEeeccccceecCCCCcEEEEecC
Confidence            1   1111111       2357888898765544444444

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.41  E-value=0.00068  Score=36.50  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=30.8

Q ss_pred             CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585          217 SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       217 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  252 (304)
                      ....|..++|+|...+||.++.+|.|.+|.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            4567899999999999999999999999998 5554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.39  E-value=0.057  Score=45.53  Aligned_cols=160  Identities=11%  Similarity=0.080  Sum_probs=88.2

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCC----CCEEEEcccCCeEEEEeCCc
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSS----KDCFISGSLDRTVLLWDQRA  133 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~  133 (304)
                      .++..++|. ||+.++...-.-.+|.+++=|   .+.+    +.-..|..+.|.|-    ...+++......|.+|.+..
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            478889997 565554443100023332211   1122    23346889999984    33566666778999999763


Q ss_pred             ceee--ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEE
Q 036585          134 EKCQ--GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  211 (304)
Q Consensus       134 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  211 (304)
                      ....  +.+..+...   +.                  +.-.---..+.|+|....|++-.....-.+++++........
T Consensus        92 s~~e~~K~l~sQtcE---i~------------------e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka  150 (671)
T PF15390_consen   92 STTERNKLLMSQTCE---IR------------------EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA  150 (671)
T ss_pred             Cccccccceeeeeee---cc------------------CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEE
Confidence            2211  111100000   00                  000011234779999888877665544456666543333322


Q ss_pred             EeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecC
Q 036585          212 NVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVR  248 (304)
Q Consensus       212 ~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~  248 (304)
                      ..  ...+-|.|.+|.+||+.|+.+- ..=.-++||-.
T Consensus       151 Di--~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  151 DI--KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ec--cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            22  3678999999999999877663 33356888854

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.39  E-value=0.055  Score=44.50  Aligned_cols=83  Identities=24%  Similarity=0.418  Sum_probs=56.0

Q ss_pred             CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCc-ceEEEE-cCC----------------CcE-
Q 036585          172 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS-TLEASF-SPE----------------GMF-  232 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-i~~~~~-s~~----------------~~~-  232 (304)
                      ....+.++..+|++++.++...-|+|.++|+.++..++.++.   .... +.-+.. .+.                ..+ 
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG---YRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG---YRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc---CccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            345678899999999999888889999999998887776662   1111 000000 000                112 


Q ss_pred             EEEecCCCcEEEEecCCCceeeeee
Q 036585          233 VISGSGDGSVHAWSVRSGKEVASWM  257 (304)
Q Consensus       233 l~~~~~dg~i~v~d~~~~~~~~~~~  257 (304)
                      ++-+-.-|.|.||.++++..+..+.
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEE
Confidence            2334568899999999998887764

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.37  E-value=0.045  Score=43.03  Aligned_cols=149  Identities=18%  Similarity=0.175  Sum_probs=78.6

Q ss_pred             ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585           99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV  178 (304)
Q Consensus        99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  178 (304)
                      ..-.+.+..+.-+++|++++++..-....-||.-...-....+                             .....|..
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r-----------------------------~~~~riq~  191 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR-----------------------------NSSRRIQS  191 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-------------------------------SSS-EEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc-----------------------------Cccceehh
Confidence            3345678888889999988888776666677754321111111                             23467899


Q ss_pred             EEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEe----CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585          179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV----KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA  254 (304)
Q Consensus       179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~  254 (304)
                      +.|+|++.+.+++ ..|.|++=+...  ....+..    .......+..++|.+++...++|+. |.+ +.....|+.-+
T Consensus       192 ~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~  266 (302)
T PF14870_consen  192 MGFSPDGNLWMLA-RGGQIQFSDDPD--DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQ  266 (302)
T ss_dssp             EEE-TTS-EEEEE-TTTEEEEEE-TT--EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-E
T ss_pred             ceecCCCCEEEEe-CCcEEEEccCCC--CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccce
Confidence            9999998865544 888888877221  1222221    1123334788999999887777764 433 34555666544


Q ss_pred             eee---ccCCCCceEEeCCCCcEEEEecCc
Q 036585          255 SWM---SFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       255 ~~~---~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      ..+   .-....+.+.|.++.+-++.|...
T Consensus       267 ~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G  296 (302)
T PF14870_consen  267 KDRVGENVPSNLYRIVFVNPDKGFVLGQDG  296 (302)
T ss_dssp             E-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred             ECccccCCCCceEEEEEcCCCceEEECCCc
Confidence            432   234568899998777777777665

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.33  E-value=0.001  Score=48.58  Aligned_cols=111  Identities=15%  Similarity=0.210  Sum_probs=70.0

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecCC-cceeeeecccccceeEEEEc-cCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFT-SHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      .....-+.-++.|+.+|.|.+|+..- +.....+..-...+.++--. .++.+..+++.   |+.|+.|++.-++.+...
T Consensus        64 ~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~---dg~ir~~n~~p~k~~g~~  140 (238)
T KOG2444|consen   64 QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQ---DGRIRACNIKPNKVLGYV  140 (238)
T ss_pred             eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEecc---CCceeeeccccCceeeee
Confidence            34444577899999999999998762 12111122222233333222 23445666666   999999999988877777


Q ss_pred             cccc-ccEEEEEEcCCCCEEEEc--ccCCeEEEEeCCcc
Q 036585           99 KGHH-DRVVLLSLCSSKDCFISG--SLDRTVLLWDQRAE  134 (304)
Q Consensus        99 ~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~  134 (304)
                      ..|. .++..+..+..++.+..+  +.|..++.|++...
T Consensus       141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            7777 555555555556666666  66777777776543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.23  E-value=0.059  Score=41.54  Aligned_cols=153  Identities=15%  Similarity=0.111  Sum_probs=89.9

Q ss_pred             ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEe-CCcceee
Q 036585           59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD-QRAEKCQ  137 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~  137 (304)
                      .+.+.+++++++.++..........++++.  .+....... ....+....|.+++...+....+...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999999888877210044455544  333333322 223678889999987766666666666663 2222211


Q ss_pred             ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee---CCCeEEEEEcC---CC---cee
Q 036585          138 GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSF---RG---TLL  208 (304)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~---~~---~~~  208 (304)
                      . ....                         .......|..+.+||||..++.-.   .++.|.+--+.   .+   ...
T Consensus       102 ~-~~v~-------------------------~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~  155 (253)
T PF10647_consen  102 P-VEVD-------------------------WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLT  155 (253)
T ss_pred             e-EEec-------------------------ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceec
Confidence            1 1100                         001112789999999999888765   34677776543   22   111


Q ss_pred             EEEEeCCCCCCcceEEEEcCCCcEEEEecCCC
Q 036585          209 STYNVKPVSRNSTLEASFSPEGMFVISGSGDG  240 (304)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  240 (304)
                      ............++.+.|.+++.+++.+...+
T Consensus       156 ~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  156 GPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             cceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence            11222222356889999999998877775444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.23  E-value=0.0018  Score=34.84  Aligned_cols=34  Identities=18%  Similarity=0.156  Sum_probs=29.8

Q ss_pred             CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce
Q 036585          173 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL  207 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  207 (304)
                      ...|..++|+|...++|.++.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            357889999999999999999999999998 5543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.071  Score=46.22  Aligned_cols=201  Identities=12%  Similarity=0.149  Sum_probs=108.6

Q ss_pred             eeEeecccCcEEEEeeCC----------CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585           19 EILQSMEVGIYLVTASDD----------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   88 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d----------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd   88 (304)
                      .-+++.|.|.-||..-.+          -.|+|++.. |+++..+.-....+-.+.|+.+...++.. .   +|++.+|+
T Consensus        36 ~~fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~-k---~g~v~Vy~  110 (829)
T KOG2280|consen   36 VYFACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQ-K---DGTVHVYG  110 (829)
T ss_pred             eEEEecccCCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEe-c---cceEEEee
Confidence            345666666666655444          247888864 66666555444478899999776555554 4   99999999


Q ss_pred             ccCceeeee--c--ccccccEEEEEEcCCCCEEEEcccCCeEEEE-eCCcceeeceEEE-e----cccee-EecCCC---
Q 036585           89 LHDNKYSRY--F--KGHHDRVVLLSLCSSKDCFISGSLDRTVLLW-DQRAEKCQGLLRV-Q----GRPAA-AYDDQG---  154 (304)
Q Consensus        89 ~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~-~----~~~~~-~~~~~~---  154 (304)
                      +.... +..  .  ......|..+.+..+|-.+++.  +|.+.+- +.+.... ..++. +    ...+. .+.+..   
T Consensus       111 ~~ge~-ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~  186 (829)
T KOG2280|consen  111 LLGEF-IESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQST  186 (829)
T ss_pred             cchhh-hcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcce
Confidence            86432 221  1  1222345555555566333333  3444332 2222111 11100 0    00111 111111   


Q ss_pred             -----------eEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceE
Q 036585          155 -----------LVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLE  223 (304)
Q Consensus       155 -----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~  223 (304)
                                 .+...+........+....+.+..+..||+.++|+.-...|.|.+-+....+....+...  ...+...
T Consensus       187 ~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~--~~~~p~q  264 (829)
T KOG2280|consen  187 ILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT--DHDPPKQ  264 (829)
T ss_pred             eEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC--CCCchHh
Confidence                       111222233333333344567788999999999999999999999998888877777632  1222224


Q ss_pred             EEEcCCC
Q 036585          224 ASFSPEG  230 (304)
Q Consensus       224 ~~~s~~~  230 (304)
                      ++|.-+.
T Consensus       265 m~Wcgnd  271 (829)
T KOG2280|consen  265 MAWCGND  271 (829)
T ss_pred             ceeecCC
Confidence            5554443

>PHA02790 Kelch-like protein; Provisional

Probab=97.21  E-value=0.088  Score=44.88  Aligned_cols=186  Identities=9%  Similarity=-0.014  Sum_probs=88.3

Q ss_pred             ccCcEEEEeeCCC-----eEEEEecCCcceee--eecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee-
Q 036585           25 EVGIYLVTASDDE-----SIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR-   96 (304)
Q Consensus        25 ~~~~~l~~~~~d~-----~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~-   96 (304)
                      .++.+++.|+.++     .+..||..+++-..  .+.........+  .-++...+.|+..+ ...+..||..+++... 
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~-~~sve~ydp~~n~W~~~  346 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPN-PTSVERWFHGDAAWVNM  346 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCC-CCceEEEECCCCeEEEC
Confidence            3455667777543     46678877654322  222211111122  23666667776521 3467888876654322 


Q ss_pred             -ecccccccEEEEEEcCCCCEEEEcccCC---eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585           97 -YFKGHHDRVVLLSLCSSKDCFISGSLDR---TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD  172 (304)
Q Consensus        97 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (304)
                       .+.........+.  -+++..+.|+.++   .+..||.++.+....-....                           .
T Consensus       347 ~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~---------------------------~  397 (480)
T PHA02790        347 PSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY---------------------------P  397 (480)
T ss_pred             CCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC---------------------------c
Confidence             2221111111222  2566777777543   35567766554322111000                           0


Q ss_pred             CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-----CcEEEEec
Q 036585          173 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----GSVHAWSV  247 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~v~d~  247 (304)
                      ....  .+..-+++..+.|   |.+.+||.++.+....-.. +........+.  -+++..+.|+.+     ..+..||.
T Consensus       398 r~~~--~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m-~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~  469 (480)
T PHA02790        398 HYKS--CALVFGRRLFLVG---RNAEFYCESSNTWTLIDDP-IYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNN  469 (480)
T ss_pred             cccc--eEEEECCEEEEEC---CceEEecCCCCcEeEcCCC-CCCccccEEEE--ECCEEEEECCcCCCcccceEEEEEC
Confidence            0111  1123356666666   3577899877655432211 11122222222  367777777754     34666776


Q ss_pred             CCC
Q 036585          248 RSG  250 (304)
Q Consensus       248 ~~~  250 (304)
                      .+.
T Consensus       470 ~~~  472 (480)
T PHA02790        470 RTY  472 (480)
T ss_pred             CCC
Confidence            543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.20  E-value=0.029  Score=48.41  Aligned_cols=115  Identities=11%  Similarity=0.151  Sum_probs=80.2

Q ss_pred             CCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc--CCCcEEEEecCCCcEEEEecC---
Q 036585          174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS--PEGMFVISGSGDGSVHAWSVR---  248 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~dg~i~v~d~~---  248 (304)
                      ....-+.-+.-++.-++.+....+.|||.+.+........  ...+.|..+.|.  |+++.+++.+-.+.|.+|.-.   
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            3445566666666666655666899999998875544443  356788888886  588888888889999998542   


Q ss_pred             --CC----ceeeee--eccC-CCCceEEeCCCCcEEEEecCceEEeccCCc
Q 036585          249 --SG----KEVASW--MSFD-TEPPVIKWAPGSLMFVTGSSELSFWIPDLS  290 (304)
Q Consensus       249 --~~----~~~~~~--~~~~-~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~  290 (304)
                        +.    .+++.+  ..|. .+|.+..|.++|..++.++..+.|++-...
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~~~  158 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKWLD  158 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCCcC
Confidence              11    223333  3333 679999999999888877777888876544

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.19  E-value=0.011  Score=44.95  Aligned_cols=109  Identities=15%  Similarity=0.208  Sum_probs=76.8

Q ss_pred             ceEEEEecCC-cEEEEeeCCCe-EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC-----CCcEEEEecC
Q 036585          176 ANVVKFSNDG-RLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-----DGSVHAWSVR  248 (304)
Q Consensus       176 v~~~~~~~~~-~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~v~d~~  248 (304)
                      ...++++|.- .-++.+-.-|+ ..++|....+...++.... ....--.=.|||||.+|++.-.     .|.|-|||.+
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~-~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQE-GRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEeccc-CceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            3457777753 34555555554 5788988877666655221 1111222479999999998743     3689999997


Q ss_pred             C-CceeeeeeccCCCCceEEeCCCCcEEEEecCceEEe
Q 036585          249 S-GKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSFW  285 (304)
Q Consensus       249 ~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw  285 (304)
                      . .+.+.++..|.-....+.|.+||+.++.+...|...
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIeth  186 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETH  186 (366)
T ss_pred             cccceecccccCCcCcceeEEecCCcEEEEeCCceecc
Confidence            5 355788888988889999999999999988866665

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.14  E-value=0.06  Score=39.90  Aligned_cols=140  Identities=15%  Similarity=0.113  Sum_probs=82.3

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccc--------ccEEEEEEcCCCCEEEE-cccCCeEEE
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH--------DRVVLLSLCSSKDCFIS-GSLDRTVLL  128 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~-~~~dg~i~i  128 (304)
                      ...+.-..+|+|+++.-...   |-.- .+....++....+.+|.        .--..++|+.+.+.++. -+.+-.|.-
T Consensus       109 nR~NDgkvdP~Gryy~GtMa---d~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a  184 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMA---DFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA  184 (310)
T ss_pred             cccccCccCCCCceeeeeec---cccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence            35566677899998433322   2111 22222233333333332        22356788876665544 456667877


Q ss_pred             Ee--CCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC----CCCCceEEEEecCCcEEEEeeCCCeEEEEEc
Q 036585          129 WD--QRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG----DISDANVVKFSNDGRLMLLTTMEGHIHVLDS  202 (304)
Q Consensus       129 wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  202 (304)
                      ||  ..++.....-                        .+++++.    .....-.+++..+|++.++.-..|+|...|.
T Consensus       185 ~dyd~~tG~~snr~------------------------~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  185 YDYDCPTGDLSNRK------------------------VIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             eecCCCcccccCcc------------------------eeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            77  4454432211                        1122211    1112233556678888888888899999999


Q ss_pred             CCCceeEEEEeCCCCCCcceEEEEcC
Q 036585          203 FRGTLLSTYNVKPVSRNSTLEASFSP  228 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~i~~~~~s~  228 (304)
                      .+|+.+.++..   ....++++||--
T Consensus       241 ~tGK~L~eikl---Pt~qitsccFgG  263 (310)
T KOG4499|consen  241 TTGKILLEIKL---PTPQITSCCFGG  263 (310)
T ss_pred             CCCcEEEEEEc---CCCceEEEEecC
Confidence            99999999994   467899999964

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.06  E-value=0.1  Score=41.10  Aligned_cols=159  Identities=8%  Similarity=0.049  Sum_probs=77.7

Q ss_pred             cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce
Q 036585           56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK  135 (304)
Q Consensus        56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  135 (304)
                      ....+..+..++++++++++..   -....-||.-...-...-+.-...|.++.|.|++.+.+.+ ..|.|+.=+.....
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~---G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSR---GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETT---SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             CcceeEeEEECCCCcEEEEECc---ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence            3467888889999999888874   3344466644322222222345789999999998766654 77888876621111


Q ss_pred             eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC
Q 036585          136 CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP  215 (304)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  215 (304)
                      ..........                        ....-.+..++|.+++...++|+ .|.+ +.....|+.-..-....
T Consensus       219 ~~w~~~~~~~------------------------~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~  272 (302)
T PF14870_consen  219 ETWSEPIIPI------------------------KTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGE  272 (302)
T ss_dssp             EEE---B-TT------------------------SS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGT
T ss_pred             cccccccCCc------------------------ccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECcccc
Confidence            1110000000                        01112467789998887666555 4443 34445555444443222


Q ss_pred             CCCCcceEEEEcCCCcEEEEecCCCcEEEE
Q 036585          216 VSRNSTLEASFSPEGMFVISGSGDGSVHAW  245 (304)
Q Consensus       216 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~  245 (304)
                      .....++.+.|.++.+-++.| .+|.|--|
T Consensus       273 ~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  273 NVPSNLYRIVFVNPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             TSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             CCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence            345568888998776666666 57766544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.05  E-value=0.075  Score=39.39  Aligned_cols=96  Identities=13%  Similarity=0.149  Sum_probs=64.5

Q ss_pred             ceEEEEecCCcEEEE-eeCCCeEEEEE--cCCCcee-----EEEEeC-CCCCCcceEEEEcCCCcEEEEecCCCcEEEEe
Q 036585          176 ANVVKFSNDGRLMLL-TTMEGHIHVLD--SFRGTLL-----STYNVK-PVSRNSTLEASFSPEGMFVISGSGDGSVHAWS  246 (304)
Q Consensus       176 v~~~~~~~~~~~l~~-~~~dg~i~~~d--~~~~~~~-----~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d  246 (304)
                      -+.++|+.+.+.+.. -+.+-.|.-||  ..+|...     ..++.. +......-.++...+|++.++.-..++|...|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            356788877766654 45566676666  5555432     222210 01111223456677888888887888999999


Q ss_pred             cCCCceeeeeeccCCCCceEEeCCC
Q 036585          247 VRSGKEVASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       247 ~~~~~~~~~~~~~~~~i~~~~~~~~  271 (304)
                      ..+|+.+.++.-....|++++|-.-
T Consensus       240 p~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEecCC
Confidence            9999999999888999999999643

>PRK10115 protease 2; Provisional

Probab=97.05  E-value=0.21  Score=44.58  Aligned_cols=112  Identities=13%  Similarity=0.096  Sum_probs=67.1

Q ss_pred             eeEeecccCcEEEEeeCC-----CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCC---CCCceEEEEcc
Q 036585           19 EILQSMEVGIYLVTASDD-----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG---WDESLRLLSLH   90 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~d~~i~vwd~~   90 (304)
                      ..+.++|+|++|+.+...     ..|++.|+.+++.+...-...  -..++|.+|++.|+......   ....|+.+++.
T Consensus       130 ~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg  207 (686)
T PRK10115        130 GGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG  207 (686)
T ss_pred             eEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence            346788999988866432     358889998886432222122  14599999999888776520   13477888888


Q ss_pred             Cc--eeeeecccccccEE-EEEEcCCCCEEEEcc---cCCeEEEEeCC
Q 036585           91 DN--KYSRYFKGHHDRVV-LLSLCSSKDCFISGS---LDRTVLLWDQR  132 (304)
Q Consensus        91 ~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~---~dg~i~iwd~~  132 (304)
                      ++  +-...+........ ....+.++++++..+   .++.+.+++..
T Consensus       208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            77  33334443333333 233344777665443   34568888743

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.08  Score=38.52  Aligned_cols=181  Identities=15%  Similarity=0.064  Sum_probs=98.9

Q ss_pred             cCcEEEEeeCCC--eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccc
Q 036585           26 VGIYLVTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHD  103 (304)
Q Consensus        26 ~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~  103 (304)
                      +|.++.+.+.-|  .|++||+.+++.+..-.-....+..=-...-+..+..-.-.  ++.-..+|..+-+.+..+. ..+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~--egvaf~~d~~t~~~lg~~~-y~G  131 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK--EGVAFKYDADTLEELGRFS-YEG  131 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEec--cceeEEEChHHhhhhcccc-cCC
Confidence            366677666433  59999999988775543221111111111123333333222  8888999998887776665 334


Q ss_pred             cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec
Q 036585          104 RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN  183 (304)
Q Consensus       104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (304)
                      .=+.++.  ++..|+.++...+++.-|.++......+......                        ..-..++.+.|- 
T Consensus       132 eGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g------------------------~pv~~LNELE~V-  184 (262)
T COG3823         132 EGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDG------------------------VPVSKLNELEWV-  184 (262)
T ss_pred             cceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECC------------------------eecccccceeee-
Confidence            4455543  4555666666677888787776655544321110                        011223334442 


Q ss_pred             CCcEEEEeeCCCeEEEEEcCCCceeEEEEeC---------CCCCCcceEEEEcCCC-cEEEEe
Q 036585          184 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK---------PVSRNSTLEASFSPEG-MFVISG  236 (304)
Q Consensus       184 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---------~~~~~~i~~~~~s~~~-~~l~~~  236 (304)
                      +|...+-.=.+..|...|..+|+....+...         ..+..-.+.+++.|++ +++++|
T Consensus       185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            4444443334445555666666665554421         1234567789999977 455555

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.95  E-value=0.099  Score=45.32  Aligned_cols=113  Identities=12%  Similarity=0.196  Sum_probs=73.4

Q ss_pred             EEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEE--e
Q 036585          105 VVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF--S  182 (304)
Q Consensus       105 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~  182 (304)
                      ..-+.-+.-++..++-+....+.|||.+.+........                            .....|..+.|  .
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f----------------------------~~~~~I~dLDWtst   83 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF----------------------------SEDDPIRDLDWTST   83 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee----------------------------cCCCceeeceeeec
Confidence            34444444454444444556899999988774333221                            13467788887  4


Q ss_pred             cCCcEEEEeeCCCeEEEEEc---------CCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEec
Q 036585          183 NDGRLMLLTTMEGHIHVLDS---------FRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSV  247 (304)
Q Consensus       183 ~~~~~l~~~~~dg~i~~~d~---------~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~  247 (304)
                      |+++.+++.+....|.+|--         .+...++.+........+|.+..|-++|..++.++  +.+.|+|-
T Consensus        84 ~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen   84 PDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             CCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            68888888888999999853         12344555554433457899999999997665553  45888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=96.86  E-value=0.18  Score=43.77  Aligned_cols=102  Identities=9%  Similarity=0.137  Sum_probs=50.3

Q ss_pred             CCcEEEEeeCC------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC--------CcEEEEecCC
Q 036585          184 DGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD--------GSVHAWSVRS  249 (304)
Q Consensus       184 ~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~v~d~~~  249 (304)
                      +++..+.|+.+      ..+..||..+.+....-..+ ...... ++ ...++..++.|+.+        ..+.+||..+
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP-ISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC-ccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence            56666666632      45888998776543322111 111111 12 22356666777643        2388899876


Q ss_pred             Cce--eeeeeccCCCCceEEeCCCCcEEEEecCc-------eEEeccCCc
Q 036585          250 GKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE-------LSFWIPDLS  290 (304)
Q Consensus       250 ~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-------~~iw~~~~~  290 (304)
                      .+-  +..+.........+.+  +++.++.|+.+       +.+|+.+.+
T Consensus       466 ~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        466 NKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            542  2222111111122222  66777777643       556665544

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.021  Score=51.59  Aligned_cols=147  Identities=10%  Similarity=0.041  Sum_probs=93.5

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee-----eeeccc------ccccEEEEEEcCCCC-EEEEcccCCe
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-----SRYFKG------HHDRVVLLSLCSSKD-CFISGSLDRT  125 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~-----~~~~~~------~~~~v~~~~~~~~~~-~l~~~~~dg~  125 (304)
                      -++..+...+|+...++..... +-.|..||+++-..     ..-+..      ......++.|+|.-. ..+....|+.
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsn-g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSN-GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecC-CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            3566777778877766665522 55889999975321     111111      223456778887533 4566677888


Q ss_pred             EEEEeCCcceee-ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585          126 VLLWDQRAEKCQ-GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       126 i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  204 (304)
                      |++..+...... ..+.                              -....++++|+|.|+.+++|...|++.-|.. +
T Consensus       180 l~V~~~~~~~~~v~s~p------------------------------~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~  228 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP------------------------------VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-S  228 (1405)
T ss_pred             hhhhhhhhhhhhhcccC------------------------------cccceeeEEeccccceeeEecCCCeEEEeec-c
Confidence            887665432211 1111                              1245789999999999999999999999874 4


Q ss_pred             CceeEEEEeCCCC-CCcceEEEEcCCCcEEEEe
Q 036585          205 GTLLSTYNVKPVS-RNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       205 ~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~  236 (304)
                      .+....+..++.. ...|.+++|-....++++-
T Consensus       229 leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  229 LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             cceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            5555555443333 3789999998776666543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.12  Score=37.70  Aligned_cols=180  Identities=16%  Similarity=0.081  Sum_probs=89.8

Q ss_pred             CCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEE-EcccCCeEEEEeCCcceeeceEEEeccc
Q 036585           68 HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQGRP  146 (304)
Q Consensus        68 ~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~  146 (304)
                      ++..+.+.+.-| ...|++||+.+++.+.+.+-....+..=-...-+..+. -.-.+|.-..+|.++-++...+..++. 
T Consensus        55 ~g~i~esTG~yg-~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-  132 (262)
T COG3823          55 DGHILESTGLYG-FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE-  132 (262)
T ss_pred             CCEEEEeccccc-cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc-
Confidence            444555554433 67899999999887665442222222111111122222 234578888888888777666543322 


Q ss_pred             eeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC--CCCCcceEE
Q 036585          147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP--VSRNSTLEA  224 (304)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~i~~~  224 (304)
                                                   -..+  ..|++.|+.+....+++.-|.++-....+.....  ..-..++.+
T Consensus       133 -----------------------------GWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNEL  181 (262)
T COG3823         133 -----------------------------GWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNEL  181 (262)
T ss_pred             -----------------------------ceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccce
Confidence                                         1112  2345556655555566666655544333333110  011122233


Q ss_pred             EEcCCCcEEEEecCCCcEEEEecCCCceeeee------------eccCCCCceEEeCCCCcEEEEecCc
Q 036585          225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASW------------MSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~------------~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      .|- ||...|-.=.+..|...|..+|+.+..+            ..+....+.+++.|++..+...+..
T Consensus       182 E~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~  249 (262)
T COG3823         182 EWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL  249 (262)
T ss_pred             eee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence            332 3433332223333444455555543322            2345567899999988555544444

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.76  E-value=0.24  Score=40.69  Aligned_cols=103  Identities=14%  Similarity=0.105  Sum_probs=56.7

Q ss_pred             CceEEEEecCCcEEEEeeCCCeEEEE-EcCC-----CceeEEEEeCCC----CCCcceEEEEcCCCcEEEEecCC-----
Q 036585          175 DANVVKFSNDGRLMLLTTMEGHIHVL-DSFR-----GTLLSTYNVKPV----SRNSTLEASFSPEGMFVISGSGD-----  239 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~~dg~i~~~-d~~~-----~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~d-----  239 (304)
                      ..+.+++.++|  |++++.. .|..| |...     ++....+.....    +......++|.|||.+.++-+..     
T Consensus        73 ~p~Gi~~~~~G--lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~  149 (367)
T TIGR02604        73 MVTGLAVAVGG--VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV  149 (367)
T ss_pred             CccceeEecCC--EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence            45778888888  4444444 45444 4421     122222221111    23457789999999766544421     


Q ss_pred             --------------CcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585          240 --------------GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       240 --------------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                                    |.|.-++...++ +..+.........++|+|+|+++++-..+
T Consensus       150 ~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       150 TRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             ccCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEccCC
Confidence                          345555554433 33332223446789999999888765544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.74  E-value=0.28  Score=42.74  Aligned_cols=190  Identities=16%  Similarity=0.172  Sum_probs=98.8

Q ss_pred             cCcEEEEeeCC-C-----eEEEEecCCcceee--eecccccceeEEEEccCCCeEEEEecCCC--CCceEEEEccCceee
Q 036585           26 VGIYLVTASDD-E-----SIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNGW--DESLRLLSLHDNKYS   95 (304)
Q Consensus        26 ~~~~l~~~~~d-~-----~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--d~~i~vwd~~~~~~~   95 (304)
                      .|...++|+.| |     ++..||..+++-..  .+...........+  +|...++|+.++.  -.++-.||..+.+..
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence            46788899988 3     46678877655222  22222222222222  6777788877221  134777887776532


Q ss_pred             eecccccccEEEEEE-cCCCCEEEEcccCC------eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585           96 RYFKGHHDRVVLLSL-CSSKDCFISGSLDR------TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS  168 (304)
Q Consensus        96 ~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
                      ..-. .......... .-++...++|+.++      .+..||..+.+....-......                      
T Consensus       410 ~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R----------------------  466 (571)
T KOG4441|consen  410 PVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR----------------------  466 (571)
T ss_pred             ccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc----------------------
Confidence            2111 1112222222 12677778887554      4667777766543322211110                      


Q ss_pred             ecCCCCCceEEEEecCCcEEEEeeCCC-----eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC---
Q 036585          169 VGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---  240 (304)
Q Consensus       169 ~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---  240 (304)
                           .... + -.-++.+.++|+.++     +|..||..+.+....-.. ......+....  -++...+.|+.||   
T Consensus       467 -----~~~g-~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m-~~~rs~~g~~~--~~~~ly~vGG~~~~~~  536 (571)
T KOG4441|consen  467 -----SGFG-V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM-TSPRSAVGVVV--LGGKLYAVGGFDGNNN  536 (571)
T ss_pred             -----ccce-E-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC-ccccccccEEE--ECCEEEEEecccCccc
Confidence                 0111 1 223677788888776     378899887765544221 11222222222  2666777887775   


Q ss_pred             --cEEEEecCCC
Q 036585          241 --SVHAWSVRSG  250 (304)
Q Consensus       241 --~i~v~d~~~~  250 (304)
                        +|..||..+.
T Consensus       537 l~~ve~ydp~~d  548 (571)
T KOG4441|consen  537 LNTVECYDPETD  548 (571)
T ss_pred             cceeEEcCCCCC
Confidence              4667776554

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.63  E-value=0.2  Score=38.20  Aligned_cols=241  Identities=11%  Similarity=0.086  Sum_probs=141.0

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee-e
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR-Y   97 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~-~   97 (304)
                      ..+.-.+||..-+++...+.|--.|..+++....--+.......+..-||+..-++-+.   . -|.-.|-++.+..+ .
T Consensus        65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~---~-aI~R~dpkt~evt~f~  140 (353)
T COG4257          65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTG---L-AIGRLDPKTLEVTRFP  140 (353)
T ss_pred             cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCc---c-eeEEecCcccceEEee
Confidence            34666778888888888888888888888877666666666777888888877666553   3 55555655543211 1


Q ss_pred             --cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC
Q 036585           98 --FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD  175 (304)
Q Consensus        98 --~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (304)
                        .+.-........|.+.|++-+++.. |.---.|..+.                            .+.+|... ....
T Consensus       141 lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~----------------------------~i~vfpaP-qG~g  190 (353)
T COG4257         141 LPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN----------------------------VISVFPAP-QGGG  190 (353)
T ss_pred             cccccCCCcccceeeCCCccEEEeecc-ccceecCcccC----------------------------ceeeeccC-CCCC
Confidence              1222346777889999988887652 21111111110                            01111111 1234


Q ss_pred             ceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeee
Q 036585          176 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS  255 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~  255 (304)
                      ...++..|+|..-++.-.+..|-..|..++ ....+............+--+|.|+.-++....+.++.+|..+.. -.+
T Consensus       191 pyGi~atpdGsvwyaslagnaiaridp~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~e  268 (353)
T COG4257         191 PYGICATPDGSVWYASLAGNAIARIDPFAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIE  268 (353)
T ss_pred             CcceEECCCCcEEEEeccccceEEcccccC-CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-cee
Confidence            566888999998888777788888888777 333444333323444556667888888887778888888876543 222


Q ss_pred             --eeccCCCCceEEeCCCCcEEEE-ecCc-eEEeccCCcccccc
Q 036585          256 --WMSFDTEPPVIKWAPGSLMFVT-GSSE-LSFWIPDLSKLGAY  295 (304)
Q Consensus       256 --~~~~~~~i~~~~~~~~~~~l~s-~~~d-~~iw~~~~~~~~~~  295 (304)
                        +.+....-.++.....++.-.+ .+.. +.-++.+...+..+
T Consensus       269 ypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~  312 (353)
T COG4257         269 YPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVL  312 (353)
T ss_pred             eeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEe
Confidence              2333444455555544443331 2222 44444444444443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.54  E-value=0.15  Score=43.16  Aligned_cols=114  Identities=13%  Similarity=0.106  Sum_probs=68.7

Q ss_pred             CCceEEEEecC----CcEEEEeeCCCeEEEEEcC-----CCceeEEEEeCCCCCCc--ceEEEEcCCCcEEEEecCCCcE
Q 036585          174 SDANVVKFSND----GRLMLLTTMEGHIHVLDSF-----RGTLLSTYNVKPVSRNS--TLEASFSPEGMFVISGSGDGSV  242 (304)
Q Consensus       174 ~~v~~~~~~~~----~~~l~~~~~dg~i~~~d~~-----~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~dg~i  242 (304)
                      ..|..+.|.|-    -..+++......|.+|.+.     +++.+.....+....-+  -..+.|+|....|+.-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            35677888884    2245555566789999874     23333332221111111  2346899998888776655544


Q ss_pred             EEEecCC--CceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccC
Q 036585          243 HAWSVRS--GKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPD  288 (304)
Q Consensus       243 ~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~  288 (304)
                      .+++++.  .+....+ ...+.|.|.+|.+||+.|+.+-.. +.-|.|+
T Consensus       137 V~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             EeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence            5566543  2223333 456789999999999988777666 4444443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.46  E-value=0.087  Score=43.72  Aligned_cols=61  Identities=8%  Similarity=0.099  Sum_probs=48.7

Q ss_pred             CCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCC
Q 036585          229 EGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       229 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~  289 (304)
                      ...|+|+++..|.|++||.-.-+....+++....|-.+..+.+|.++++.+.. +.+-+...
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i  633 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI  633 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence            45599999999999999964444445567788889999999999998888888 77766654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=96.41  E-value=0.24  Score=36.46  Aligned_cols=103  Identities=16%  Similarity=0.272  Sum_probs=64.9

Q ss_pred             cEEEEeeCCCeEEEEEcC--CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---C---cEEEE---ecC--CCce
Q 036585          186 RLMLLTTMEGHIHVLDSF--RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---G---SVHAW---SVR--SGKE  252 (304)
Q Consensus       186 ~~l~~~~~dg~i~~~d~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g---~i~v~---d~~--~~~~  252 (304)
                      ..|+++...+.|.+|++.  ..+...++.    .-+.|..+.++..|+||++--.+   .   .+|+|   ...  ..++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~  104 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP  104 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence            445555667789999988  344555555    55889999999999999987322   2   56665   221  1111


Q ss_pred             ee-eeec---------------------cCCCCceEEeCCCCcEEEEecCc-eEEeccCCccc
Q 036585          253 VA-SWMS---------------------FDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSKL  292 (304)
Q Consensus       253 ~~-~~~~---------------------~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~~  292 (304)
                      +. .+-|                     -..++.+++..|-..-|+.|+.+ +.||.+.....
T Consensus       105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~  167 (215)
T PF14761_consen  105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTI  167 (215)
T ss_pred             EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEE
Confidence            11 1111                     23467888888865556666666 88987754443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.39  E-value=0.39  Score=38.68  Aligned_cols=117  Identities=19%  Similarity=0.272  Sum_probs=73.6

Q ss_pred             CceEEEEecCCcEEEEeeCC------CeEEEEEcCCCceeEEEEeCC------------CCCCcceEEEEcCCCcEEEEe
Q 036585          175 DANVVKFSNDGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKP------------VSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~------------~~~~~i~~~~~s~~~~~l~~~  236 (304)
                      ....|++.++|.++++.-.+      ..|+.++.. |+....+..+.            ..+...-+++++|+|+.|+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            45568887788877776666      789899976 77666653221            134567789999999976665


Q ss_pred             cC-----CC--c-------EEE--EecCC-Cceeeee----ec-----cCCCCceEEeCCCCcEEEEecC-----c--eE
Q 036585          237 SG-----DG--S-------VHA--WSVRS-GKEVASW----MS-----FDTEPPVIKWAPGSLMFVTGSS-----E--LS  283 (304)
Q Consensus       237 ~~-----dg--~-------i~v--~d~~~-~~~~~~~----~~-----~~~~i~~~~~~~~~~~l~s~~~-----d--~~  283 (304)
                      .+     |+  .       +++  ||..+ ++....+    ..     ....|+.+.+-+++++|+-=-.     .  .+
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~r  244 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKR  244 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEE
Confidence            32     22  1       444  45444 3233332    21     3467889999999987754222     2  78


Q ss_pred             EeccCCccc
Q 036585          284 FWIPDLSKL  292 (304)
Q Consensus       284 iw~~~~~~~  292 (304)
                      |+.++....
T Consensus       245 i~~v~l~~a  253 (326)
T PF13449_consen  245 IYRVDLSDA  253 (326)
T ss_pred             EEEEEcccc
Confidence            887765543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.37  E-value=0.39  Score=39.41  Aligned_cols=151  Identities=17%  Similarity=0.171  Sum_probs=75.7

Q ss_pred             ceeEEEEccCCCeEEEEecC--------CCCC-ceEEEEccC--ce--eeeecccccccEEEEEEcCCCCEEEEcccCCe
Q 036585           59 GVDLVCFTSHPTTVIYSSKN--------GWDE-SLRLLSLHD--NK--YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRT  125 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~~--------~~d~-~i~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  125 (304)
                      ....|+|.++|+.+++-..+        ...+ .|.+++-.+  ++  ....+.........+++.+++ ++++ .....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCeE
Confidence            46678999988877665310        0022 676665433  22  223333333456788998888 4444 44433


Q ss_pred             EEEEeCCcce-----eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-------
Q 036585          126 VLLWDQRAEK-----CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-------  193 (304)
Q Consensus       126 i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------  193 (304)
                      .++.|.....     ....+..-....                      ..+......++|.|||.+.++-+.       
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~----------------------~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~  150 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQI----------------------NNHHHSLNSLAWGPDGWLYFNHGNTLASKVT  150 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCC----------------------CcccccccCceECCCCCEEEecccCCCceec
Confidence            3343443211     111111000000                      001234566778888765544331       


Q ss_pred             ------------CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec
Q 036585          194 ------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       194 ------------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                                  .|.|.-++..+++. ..+.   ..-.....++|+|+|+++++-.
T Consensus       151 ~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a---~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       151 RPGTSDESRQGLGGGLFRYNPDGGKL-RVVA---HGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cCCCccCcccccCceEEEEecCCCeE-EEEe---cCcCCCccceECCCCCEEEEcc
Confidence                        14566666655443 2232   1233456789999998876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.093  Score=42.91  Aligned_cols=107  Identities=10%  Similarity=0.172  Sum_probs=73.0

Q ss_pred             CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEe-CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585          172 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV-KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG  250 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~  250 (304)
                      ..++|.++.||+|.+.+++--.+.+|.+++....+....... .......|...+|+.. .-+|.....| +-+|-....
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            446899999999999999999999999999743332222211 1124456888999876 4566665444 777766443


Q ss_pred             -ceeeeeeccCCCCceEEeCCCCcEEEEecC
Q 036585          251 -KEVASWMSFDTEPPVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       251 -~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  280 (304)
                       +.++..+.|...|+-..|.++-+.+.-++.
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeecc
Confidence             235555678888888889888775544443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.30  E-value=0.45  Score=38.44  Aligned_cols=225  Identities=15%  Similarity=0.172  Sum_probs=112.4

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcce---eeee----cccccceeEEEEccC---CCeEEEEecC------CC
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATC---LKTI----NSKKYGVDLVCFTSH---PTTVIYSSKN------GW   80 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l~~~~~~------~~   80 (304)
                      ++-.+.+.|+|+++++ ...|.|++++ .++..   +..+    .........++++|+   ..+|.+....      ..
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3557889999877665 5699999999 33333   2222    223457899999994   2334333320      00


Q ss_pred             CCceEEEEccCc-------eee-eeccc---ccccEEEEEEcCCCCEEEEcccC-------------CeEEEEeCCcce-
Q 036585           81 DESLRLLSLHDN-------KYS-RYFKG---HHDRVVLLSLCSSKDCFISGSLD-------------RTVLLWDQRAEK-  135 (304)
Q Consensus        81 d~~i~vwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~-  135 (304)
                      +..|.-|....+       +.+ ..+..   ....-..+.|.|++.+.++.+..             |.|.-.+....- 
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p  160 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP  160 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence            124444544433       111 11111   22345679999999766654432             333333432110 


Q ss_pred             -----------eeceEE--EeccceeEecCC-CeEEEecCCC---eEEEEecC---------------------------
Q 036585          136 -----------CQGLLR--VQGRPAAAYDDQ-GLVFGYEKGP---LDIFSVGG---------------------------  171 (304)
Q Consensus       136 -----------~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~---------------------------  171 (304)
                                 ....+.  .....-+++++. +.++..+.+.   -.+..+..                           
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~  240 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP  240 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred             CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence                       011111  112224566776 6666443221   12211110                           


Q ss_pred             ----------CCCCceEEEEec-------CCcEEEEeeCCCeEEEEEcCCCceeEEE-EeCCCCCCcceEEEEcCCCcEE
Q 036585          172 ----------DISDANVVKFSN-------DGRLMLLTTMEGHIHVLDSFRGTLLSTY-NVKPVSRNSTLEASFSPEGMFV  233 (304)
Q Consensus       172 ----------~~~~v~~~~~~~-------~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l  233 (304)
                                +...+..+.|-.       .|.+|+..-..+.|....+..+..+... .........+..+++.|||.+.
T Consensus       241 ~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Ly  320 (331)
T PF07995_consen  241 GFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALY  320 (331)
T ss_dssp             TS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEE
T ss_pred             CcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEE
Confidence                      112333444432       3455665555678888887655433322 2222344478999999999988


Q ss_pred             EEecCCCcEE
Q 036585          234 ISGSGDGSVH  243 (304)
Q Consensus       234 ~~~~~dg~i~  243 (304)
                      ++.+.+|.|+
T Consensus       321 v~~d~~G~iy  330 (331)
T PF07995_consen  321 VSDDSDGKIY  330 (331)
T ss_dssp             EEE-TTTTEE
T ss_pred             EEECCCCeEe
Confidence            8888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.19  E-value=0.4  Score=42.25  Aligned_cols=74  Identities=12%  Similarity=0.076  Sum_probs=51.1

Q ss_pred             CCceEEEEe--cCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC---c---EEEEecCCCcEEEE
Q 036585          174 SDANVVKFS--NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG---M---FVISGSGDGSVHAW  245 (304)
Q Consensus       174 ~~v~~~~~~--~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~---~l~~~~~dg~i~v~  245 (304)
                      ..+..++++  ...+++|+++....|.||-...............+...|.+++|-++.   .   +|++++-.|.+.+|
T Consensus       164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~  243 (717)
T PF08728_consen  164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF  243 (717)
T ss_pred             CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence            366778888  788889999888888887654421111111111256678889988743   2   78889999999998


Q ss_pred             ec
Q 036585          246 SV  247 (304)
Q Consensus       246 d~  247 (304)
                      ++
T Consensus       244 ~I  245 (717)
T PF08728_consen  244 KI  245 (717)
T ss_pred             EE
Confidence            87

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.17  E-value=0.065  Score=40.20  Aligned_cols=76  Identities=13%  Similarity=0.116  Sum_probs=53.7

Q ss_pred             eecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeee-------c-------ccccceeEEEEccCCCeEEEEecCC
Q 036585           14 LELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTI-------N-------SKKYGVDLVCFTSHPTTVIYSSKNG   79 (304)
Q Consensus        14 ~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~~~   79 (304)
                      +.....++.....+++|++-+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+   
T Consensus         9 i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls---   85 (219)
T PF07569_consen    9 IVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS---   85 (219)
T ss_pred             EecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe---
Confidence            3344455666778999999999999999999987764332       1       2345677778887777777665   


Q ss_pred             CCCceEEEEccCce
Q 036585           80 WDESLRLLSLHDNK   93 (304)
Q Consensus        80 ~d~~i~vwd~~~~~   93 (304)
                       +|..+.|+..-+.
T Consensus        86 -ng~~y~y~~~L~~   98 (219)
T PF07569_consen   86 -NGDSYSYSPDLGC   98 (219)
T ss_pred             -CCCEEEeccccce
Confidence             6677888765443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.07  E-value=1.1  Score=40.68  Aligned_cols=254  Identities=12%  Similarity=0.096  Sum_probs=130.5

Q ss_pred             cCcEEEEeeCCCeEEEEecC--Ccceeeee--cccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccc
Q 036585           26 VGIYLVTASDDESIRLYDVT--AATCLKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH  101 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~--~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~  101 (304)
                      |+.+|.++..||.+.-+.+.  +++.-..-  .-...|+.--.|+..++.-+.+.+   |.-..+|.-+. +.+.+--.-
T Consensus       594 d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s---drP~viY~~n~-kLv~spls~  669 (1096)
T KOG1897|consen  594 DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS---DRPTVIYSSNG-KLVYSPLSL  669 (1096)
T ss_pred             cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC---CCCEEEEecCC-cEEEeccch
Confidence            46799999999998766544  44332211  223456666677665554444444   66666666443 322211101


Q ss_pred             cccEEEEEEcCC--CCEEEEcccCCeEEEEeCCcceeece--EEEec-cceeEecCCC----------------------
Q 036585          102 HDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGL--LRVQG-RPAAAYDDQG----------------------  154 (304)
Q Consensus       102 ~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~-~~~~~~~~~~----------------------  154 (304)
                      +.--..+.|+.+  +..++++.. +.+++.-+..-+....  +.... ...+++.+..                      
T Consensus       670 kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~  748 (1096)
T KOG1897|consen  670 KEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYE  748 (1096)
T ss_pred             HHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcce
Confidence            110011122211  223444433 4455554433222111  11111 1112222111                      


Q ss_pred             --eEEEecCCCeEEEEecCCC-----CCceEEEEecC-CcEEEEee----------CCCeEEEEEcCCCceeEEEEeCCC
Q 036585          155 --LVFGYEKGPLDIFSVGGDI-----SDANVVKFSND-GRLMLLTT----------MEGHIHVLDSFRGTLLSTYNVKPV  216 (304)
Q Consensus       155 --~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~----------~dg~i~~~d~~~~~~~~~~~~~~~  216 (304)
                        .+..++.+...+.....-.     ..+.+..|..| +.++++|+          ..|.|.+|.....+.+...... .
T Consensus       749 ~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~  827 (1096)
T KOG1897|consen  749 VSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-V  827 (1096)
T ss_pred             EEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee-e
Confidence              1223333333333222111     23444557766 77788875          3588999988774444433311 2


Q ss_pred             CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          217 SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       217 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      -.+.+.++.. -+|+++|.-  +..|++|+..+.+.++.-..+..++..+...-.|..++.|.--  +.+-.+.
T Consensus       828 v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~  898 (1096)
T KOG1897|consen  828 VKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK  898 (1096)
T ss_pred             eccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence            3455554432 267766654  4579999998887777667788888888888888888887654  5444443

>PRK10115 protease 2; Provisional

Probab=96.05  E-value=1  Score=40.36  Aligned_cols=74  Identities=8%  Similarity=-0.010  Sum_probs=48.5

Q ss_pred             ceeEEEEccCCCeEEEEecCC--CCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccC------CeEEEEe
Q 036585           59 GVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLD------RTVLLWD  130 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd  130 (304)
                      .+..+.++|++++|+.+...+  ....|++.|+.+++.+........  ..++|.+|++.|+....+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            467789999999999886531  134588889988764322211221  458999998866665432      3566677


Q ss_pred             CCcc
Q 036585          131 QRAE  134 (304)
Q Consensus       131 ~~~~  134 (304)
                      +.++
T Consensus       206 lgt~  209 (686)
T PRK10115        206 IGTP  209 (686)
T ss_pred             CCCC
Confidence            7666

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=96.02  E-value=0.89  Score=39.24  Aligned_cols=239  Identities=13%  Similarity=0.109  Sum_probs=121.0

Q ss_pred             cccCcEEEEeeCCCeEEEEecCCcc--eeeeeccc-ccceeEEEEccCC-CeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           24 MEVGIYLVTASDDESIRLYDVTAAT--CLKTINSK-KYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        24 ~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      ..++..++.+..+|.+....+....  .....-+. .....++++..++ .+++.|+..| |+.+.-|....-+.+..+.
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~g-ds~l~~~~~~~l~~~~~~~  297 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFG-DSQLLQISLSNLEVLDSLP  297 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS--EEEEEEESESEEEEEEE-
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecC-CcEEEEEeCCCcEEEEecc
Confidence            4557788899999999887776433  12222222 3345666666554 4777777655 7888777755555666665


Q ss_pred             cccccEEEEEEcCC----CC------EEEEcc---cCCeEEEEeCCcceeec--e---EEEeccc-eeEecC----CCeE
Q 036585          100 GHHDRVVLLSLCSS----KD------CFISGS---LDRTVLLWDQRAEKCQG--L---LRVQGRP-AAAYDD----QGLV  156 (304)
Q Consensus       100 ~~~~~v~~~~~~~~----~~------~l~~~~---~dg~i~iwd~~~~~~~~--~---~~~~~~~-~~~~~~----~~~~  156 (304)
                       .-+||..+.+.+.    ..      .+++++   .+|.+++..  .+-...  .   ....+.. ......    +..+
T Consensus       298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~l  374 (504)
T PF10433_consen  298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYL  374 (504)
T ss_dssp             ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEE
T ss_pred             -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEE
Confidence             4578888888531    11      455543   578888864  222222  1   1122211 111111    2333


Q ss_pred             EEecCCCeEEEEec--CCCCCceEE---EEecCCcEEEEeeC---------CCeEEEEEcCCCceeEEEEeCCCCCCcce
Q 036585          157 FGYEKGPLDIFSVG--GDISDANVV---KFSNDGRLMLLTTM---------EGHIHVLDSFRGTLLSTYNVKPVSRNSTL  222 (304)
Q Consensus       157 ~~~~~~~~~~~~~~--~~~~~v~~~---~~~~~~~~l~~~~~---------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~  222 (304)
                      +......-.++.+.  .....+..+   .|..+.+.|+++..         ...|++.+...++.......  .....|.
T Consensus       375 v~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~w~~--~~~~~I~  452 (504)
T PF10433_consen  375 VLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKLTQEWKP--PAGSIIV  452 (504)
T ss_dssp             EEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSSTSEEEEEE---TTS---S
T ss_pred             EEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCCeEEEEEeC--CCCCeEE
Confidence            43334445555554  222333222   45555666666554         23478888777777766653  2455666


Q ss_pred             EEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee-----ccCCCCceEEeCC
Q 036585          223 EASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM-----SFDTEPPVIKWAP  270 (304)
Q Consensus       223 ~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~i~~~~~~~  270 (304)
                      +.+.+  +.+++.+-.++.+..+.+..........     .....|.|+..+|
T Consensus       453 ~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  453 AASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             EEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             EEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            66654  3456666668889999887665532221     2467788887766

...

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.00  E-value=0.044  Score=28.61  Aligned_cols=30  Identities=23%  Similarity=0.470  Sum_probs=25.6

Q ss_pred             CceEEEEecCC---cEEEEeeCCCeEEEEEcCC
Q 036585          175 DANVVKFSNDG---RLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       175 ~v~~~~~~~~~---~~l~~~~~dg~i~~~d~~~  204 (304)
                      .+.+++|+|..   .+|+.+-..|.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57889999854   5888888899999999985

It contains a characteristic DLL sequence motif.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.97  E-value=1.2  Score=40.33  Aligned_cols=202  Identities=13%  Similarity=0.099  Sum_probs=108.3

Q ss_pred             CCeEEEEecCCCCCceEEEEccCceeeeeccccccc--------EEEEEEcC----------------CCCEEEEcccCC
Q 036585           69 PTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR--------VVLLSLCS----------------SKDCFISGSLDR  124 (304)
Q Consensus        69 ~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~dg  124 (304)
                      +..++.++.   ++.|.-.|..+|+.+-.+......        ...+.+..                .+..++.++.|+
T Consensus       194 gg~lYv~t~---~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg  270 (764)
T TIGR03074       194 GDTLYLCTP---HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA  270 (764)
T ss_pred             CCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence            556777776   888998999998877665422110        11222221                234778888899


Q ss_pred             eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec--CCcEEEEeeC---------
Q 036585          125 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN--DGRLMLLTTM---------  193 (304)
Q Consensus       125 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~---------  193 (304)
                      .+.-.|.++++....+...+.......                 +......-..+.-.|  .+..+++|+.         
T Consensus       271 ~LiALDA~TGk~~W~fg~~G~vdl~~~-----------------~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~  333 (764)
T TIGR03074       271 RLIALDADTGKLCEDFGNNGTVDLTAG-----------------MGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDE  333 (764)
T ss_pred             eEEEEECCCCCEEEEecCCCceeeecc-----------------cCcCCCcccccccCCEEECCEEEEEecccccccccC
Confidence            999999999988776543221100000                 000000000011111  1234555532         


Q ss_pred             -CCeEEEEEcCCCceeEEEEeCCCC------CC--------cc-eEEEEcCCCcEEEEec------------------CC
Q 036585          194 -EGHIHVLDSFRGTLLSTYNVKPVS------RN--------ST-LEASFSPEGMFVISGS------------------GD  239 (304)
Q Consensus       194 -dg~i~~~d~~~~~~~~~~~~~~~~------~~--------~i-~~~~~s~~~~~l~~~~------------------~d  239 (304)
                       +|.|+-+|.++|+.+..+......      .+        .+ ..++++|+...++.+.                  ..
T Consensus       334 ~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~  413 (764)
T TIGR03074       334 PSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYS  413 (764)
T ss_pred             CCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCccccc
Confidence             688999999999998887632100      00        11 2345666555555432                  12


Q ss_pred             CcEEEEecCCCceeeeeeccCCCCc---------eEEeCC-CCc---EEEEecCceEEeccCCc
Q 036585          240 GSVHAWSVRSGKEVASWMSFDTEPP---------VIKWAP-GSL---MFVTGSSELSFWIPDLS  290 (304)
Q Consensus       240 g~i~v~d~~~~~~~~~~~~~~~~i~---------~~~~~~-~~~---~l~s~~~d~~iw~~~~~  290 (304)
                      +.|.-.|.++|+..-.++.....+.         =+.+.. +|+   .++.++.+..+|.++.+
T Consensus       414 ~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~  477 (764)
T TIGR03074       414 SSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRR  477 (764)
T ss_pred             ceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence            4577778888888766643221111         112222 553   67777777666665543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.97  E-value=0.43  Score=35.20  Aligned_cols=163  Identities=11%  Similarity=0.102  Sum_probs=85.0

Q ss_pred             CeEEEEecCCCCCceEEEEccC--ceeeeecccccccEEEEEEcCCCCEEEEcccC---C---eEEEE-eCCcc----ee
Q 036585           70 TTVIYSSKNGWDESLRLLSLHD--NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLD---R---TVLLW-DQRAE----KC  136 (304)
Q Consensus        70 ~~l~~~~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw-d~~~~----~~  136 (304)
                      +.|+.+..   ...|.+|++.+  .+....+.. -+.|..+.++..|+++++--.+   .   .+|+| |.+..    ++
T Consensus        29 d~Lfva~~---g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~  104 (215)
T PF14761_consen   29 DALFVAAS---GCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP  104 (215)
T ss_pred             ceEEEEcC---CCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence            44444444   77899999983  345566663 4789999999999999996432   2   56665 22222    11


Q ss_pred             eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce-eEEE---E
Q 036585          137 QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-LSTY---N  212 (304)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~---~  212 (304)
                      ... +.-+...-     ..........+.+..+.- ...+.+++..|-..-|++|+. +++.+|.+..... ...+   .
T Consensus       105 v~v-RiaG~~v~-----~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lD  176 (215)
T PF14761_consen  105 VRV-RIAGHRVT-----PSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLD  176 (215)
T ss_pred             EEE-EEcccccc-----cCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEe
Confidence            111 11110000     000000112344444443 456778888885444666654 4888998764433 1111   1


Q ss_pred             eC-----CCCCCcceEEEEcCCCcEEEEecCCCcEEEEec
Q 036585          213 VK-----PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSV  247 (304)
Q Consensus       213 ~~-----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~  247 (304)
                      ..     .........+++  -+.|+|..+ +-.++++.+
T Consensus       177 Fe~~l~~~~~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  177 FERSLIDHIDNFKPTQVAI--CEGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             chhhhhheecCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence            00     001122344455  345777775 445776654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.91  E-value=0.1  Score=47.58  Aligned_cols=109  Identities=12%  Similarity=0.059  Sum_probs=69.3

Q ss_pred             eEeecccCcEEEE--eeCCCeEEEEecCCcce-----eeeeccc------ccceeEEEEccCCCe-EEEEecCCCCCceE
Q 036585           20 ILQSMEVGIYLVT--ASDDESIRLYDVTAATC-----LKTINSK------KYGVDLVCFTSHPTT-VIYSSKNGWDESLR   85 (304)
Q Consensus        20 ~i~~~~~~~~l~~--~~~d~~i~vw~~~~~~~-----~~~~~~~------~~~v~~~~~~~~~~~-l~~~~~~~~d~~i~   85 (304)
                      .+.+.+|+...++  .+.+-.|..||+++-..     ..-|..|      .....++.|+|.-.. .+....   |+.|+
T Consensus       105 ~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~---dlsl~  181 (1405)
T KOG3630|consen  105 IFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS---DLSLR  181 (1405)
T ss_pred             EEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcc---ccchh
Confidence            3456667654433  33444788899875321     1112222      234567888886543 333344   89999


Q ss_pred             EEEccCcee-eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC
Q 036585           86 LLSLHDNKY-SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR  132 (304)
Q Consensus        86 vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  132 (304)
                      +..+..... +..+. .....++++|+|.|+.++.|-..|++.-|...
T Consensus       182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~  228 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS  228 (1405)
T ss_pred             hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc
Confidence            887754332 22332 56678999999999999999999999888654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.87  E-value=0.73  Score=37.14  Aligned_cols=160  Identities=12%  Similarity=0.096  Sum_probs=89.6

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCc------eEEEEccC--c--eee-----eecccccc--------cEEEEEEcCCC
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDES------LRLLSLHD--N--KYS-----RYFKGHHD--------RVVLLSLCSSK  114 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~------i~vwd~~~--~--~~~-----~~~~~~~~--------~v~~~~~~~~~  114 (304)
                      +....+.+.+++..+++.+.   ++.      +..+++..  +  ..+     ..+....+        ...++++.+++
T Consensus        20 GGlSgl~~~~~~~~~~avSD---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g   96 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSD---RGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG   96 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEEC---CCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence            56788888876667777776   555      55454443  1  111     11111111        34477887788


Q ss_pred             CEEEEcccC------CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEE
Q 036585          115 DCFISGSLD------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLM  188 (304)
Q Consensus       115 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  188 (304)
                      .++++.-.+      ..|+.++.. ++....+..+..........              .-.........++++|+|+.|
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~--------------~~~~~N~G~E~la~~~dG~~l  161 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGT--------------SGRRNNRGFEGLAVSPDGRTL  161 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCcc--------------ccccCCCCeEEEEECCCCCEE
Confidence            888887777      778888866 55555543322110000000              001244678899999999966


Q ss_pred             EEeeC-----CC-----------eEEEEEcCC-CceeEEEEeCCC------CCCcceEEEEcCCCcEEEE
Q 036585          189 LLTTM-----EG-----------HIHVLDSFR-GTLLSTYNVKPV------SRNSTLEASFSPEGMFVIS  235 (304)
Q Consensus       189 ~~~~~-----dg-----------~i~~~d~~~-~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~  235 (304)
                      +++.+     |+           .|..||..+ ++....+.....      ....+..+.+-+++++|+.
T Consensus       162 ~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  162 FAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             EEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            66543     22           244455554 333444332212      3567888999999987664

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.87  E-value=0.054  Score=28.30  Aligned_cols=31  Identities=16%  Similarity=0.130  Sum_probs=26.1

Q ss_pred             ccEEEEEEcCCC---CEEEEcccCCeEEEEeCCc
Q 036585          103 DRVVLLSLCSSK---DCFISGSLDRTVLLWDQRA  133 (304)
Q Consensus       103 ~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~  133 (304)
                      +.|.++.|+|++   .+|+.+-..|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468899999844   4888888889999999995

It contains a characteristic DLL sequence motif.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.77  E-value=0.75  Score=40.66  Aligned_cols=110  Identities=11%  Similarity=0.106  Sum_probs=67.3

Q ss_pred             CceEEEEec--CCcEEEEeeCCCeEEEEEcCC-------C----c---------eeEEEEeCCCCCCcceEEEEc--CCC
Q 036585          175 DANVVKFSN--DGRLMLLTTMEGHIHVLDSFR-------G----T---------LLSTYNVKPVSRNSTLEASFS--PEG  230 (304)
Q Consensus       175 ~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~-------~----~---------~~~~~~~~~~~~~~i~~~~~s--~~~  230 (304)
                      .|+.+....  +...|+++..||.|.+|.+++       .    .         +...+.    .....++++++  ...
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~----v~~SaWGLdIh~~~~~  177 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR----VGASAWGLDIHDYKKS  177 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee----cCCceeEEEEEecCcc
Confidence            345454433  456788999999999997521       1    0         111111    34578889998  778


Q ss_pred             cEEEEecCCCcEEEEecCCC--ce-eeeeeccCCCCceEEeCCCC-----c-EEEEecCceEEeccC
Q 036585          231 MFVISGSGDGSVHAWSVRSG--KE-VASWMSFDTEPPVIKWAPGS-----L-MFVTGSSELSFWIPD  288 (304)
Q Consensus       231 ~~l~~~~~dg~i~v~d~~~~--~~-~~~~~~~~~~i~~~~~~~~~-----~-~l~s~~~d~~iw~~~  288 (304)
                      ++||+++....|.||-....  +. ...-..+...|.+|+|-++.     . .+++++-...+|.++
T Consensus       178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            88888888888888765432  11 11112366779999998754     2 555555544444433

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.73  E-value=1.3  Score=38.96  Aligned_cols=186  Identities=13%  Similarity=0.176  Sum_probs=91.4

Q ss_pred             CCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece-E--EEec--cceeEecCCCe
Q 036585           81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL-L--RVQG--RPAAAYDDQGL  155 (304)
Q Consensus        81 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~--~~~~--~~~~~~~~~~~  155 (304)
                      --.|+|++.. |+.+..+.-..+.+..+.|+.+. .|++...+|++++|++-....... .  ....  .....+-.+|.
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence            4568888865 55555444333478889999665 677778999999999753322210 0  1111  11111122333


Q ss_pred             EEEecCCCe---------EEEEecC---CCCCceEEEEecCCcE---EE-EeeCCCeEEEEEcCCCc-eeEEEEeCCCCC
Q 036585          156 VFGYEKGPL---------DIFSVGG---DISDANVVKFSNDGRL---ML-LTTMEGHIHVLDSFRGT-LLSTYNVKPVSR  218 (304)
Q Consensus       156 ~~~~~~~~~---------~~~~~~~---~~~~v~~~~~~~~~~~---l~-~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~  218 (304)
                      .+-..++.+         .++.+..   ..-+-++-...+++..   ++ +.-..+ ..++...... ....+.   ...
T Consensus       141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~---~~~  216 (829)
T KOG2280|consen  141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALS---WPN  216 (829)
T ss_pred             EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccC---CCC
Confidence            333333332         2222221   1111122222222211   11 000000 0111111111 111111   123


Q ss_pred             CcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee--ccCCCCceEEeCCCCc
Q 036585          219 NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM--SFDTEPPVIKWAPGSL  273 (304)
Q Consensus       219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~  273 (304)
                      ..+..+..||+.++|+--...|.|.+-+....+.+..+.  .| .+...++|..+..
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcgnda  272 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCGNDA  272 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCC-CchHhceeecCCc
Confidence            567778999999999999999999998887666655553  22 2334666665543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.67  E-value=0.4  Score=40.08  Aligned_cols=146  Identities=12%  Similarity=0.148  Sum_probs=84.7

Q ss_pred             ccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCC-------EEEEcccCCeEEEEeCCcceeec
Q 036585           66 TSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKD-------CFISGSLDRTVLLWDQRAEKCQG  138 (304)
Q Consensus        66 ~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~~~  138 (304)
                      ..+.+.++.-+..  ...++-.|++-|+.+.....|...  -+.|.|..+       .-+.|-.+..|.-.|.+-.... 
T Consensus       476 ~~dssli~~dg~~--~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK-  550 (776)
T COG5167         476 DNDSSLIYLDGGE--RDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK-  550 (776)
T ss_pred             cCCcceEEecCCC--cccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCc-
Confidence            3444555444432  677888899999999888877654  466776432       1223333444444465533211 


Q ss_pred             eEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEe----cCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC
Q 036585          139 LLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS----NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  214 (304)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  214 (304)
                       +...                           .....++.-.|+    ....++++++..|.|++||--..+....+.  
T Consensus       551 -i~v~---------------------------esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP--  600 (776)
T COG5167         551 -IKVV---------------------------ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP--  600 (776)
T ss_pred             -eeee---------------------------eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc--
Confidence             1000                           000111112222    234589999999999999943322222222  


Q ss_pred             CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          215 PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       215 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                       +....|..+..+.+|+++++.+. ..+.+-|++
T Consensus       601 -~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         601 -GLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             -ccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence             56678888999999999887764 467777764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.51  E-value=0.15  Score=38.23  Aligned_cols=68  Identities=18%  Similarity=0.229  Sum_probs=50.3

Q ss_pred             EEecCCcEEEEeeCCCeEEEEEcCCCceeEEEE----eCC-------CCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          180 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN----VKP-------VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                      .+..++.++++-+.+|.+++||+.+++....-.    ...       .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            355678899999999999999999887654431    000       2456788888998887777664 5788999864

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA02790 Kelch-like protein; Provisional

Probab=95.37  E-value=1.5  Score=37.61  Aligned_cols=105  Identities=9%  Similarity=0.066  Sum_probs=52.4

Q ss_pred             ccCcEEEEeeCC--CeEEEEecCCcce--eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee--c
Q 036585           25 EVGIYLVTASDD--ESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY--F   98 (304)
Q Consensus        25 ~~~~~l~~~~~d--~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~--~   98 (304)
                      .+|...+.|+.+  .++..||..+++-  +..+.......  ....-+++..+.|+..+....+..||..+++-...  +
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m  394 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST  394 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence            356777778754  3577788765432  22222111111  12223677777777532234577888877653321  1


Q ss_pred             ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee
Q 036585           99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC  136 (304)
Q Consensus        99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  136 (304)
                      .........+  .-++...+.|+   .+.+||.++.+-
T Consensus       395 ~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W  427 (480)
T PHA02790        395 YYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNTW  427 (480)
T ss_pred             CCccccceEE--EECCEEEEECC---ceEEecCCCCcE
Confidence            1111111112  22455556553   467788766544

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.28  E-value=0.0026  Score=51.80  Aligned_cols=112  Identities=9%  Similarity=0.121  Sum_probs=76.4

Q ss_pred             eecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc--
Q 036585           22 QSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK--   99 (304)
Q Consensus        22 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~--   99 (304)
                      .+-+.+.-++.++.+..+..||- .++....+. .++....++|..++..++.....  .+.+.+||+.+....+.-.  
T Consensus        41 ~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek--~~piylwd~n~eytqqLE~gg  116 (615)
T KOG2247|consen   41 RWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEK--TGPIYLWDVNSEYTQQLESGG  116 (615)
T ss_pred             eEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhc--CCCeeechhhhhhHHHHhccC
Confidence            34455555888888888888884 344444333 33456778998888887777654  8999999998643211111  


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL  139 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  139 (304)
                      .|+...  +.|++....++.+...|.+.+++..+.+....
T Consensus       117 ~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv  154 (615)
T KOG2247|consen  117 TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV  154 (615)
T ss_pred             cchHHH--HhhccCCccccccccccceEEEeccchhhhhh
Confidence            133332  78999888999999999999999877655433

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.23  E-value=0.57  Score=31.64  Aligned_cols=108  Identities=12%  Similarity=0.109  Sum_probs=67.3

Q ss_pred             EEEecCCcEEEEeeCCCeEEEEEcCCC--------ceeEEEEeCCCCCCcceEEEEcC-----CCcEEEEecCCCcEEEE
Q 036585          179 VKFSNDGRLMLLTTMEGHIHVLDSFRG--------TLLSTYNVKPVSRNSTLEASFSP-----EGMFVISGSGDGSVHAW  245 (304)
Q Consensus       179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~--------~~~~~~~~~~~~~~~i~~~~~s~-----~~~~l~~~~~dg~i~v~  245 (304)
                      -+|......|++++..|+|.+++....        ..+..+.    -...|++++-.+     +...|+.|+ ...+..|
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN----in~~italaaG~l~~~~~~D~LliGt-~t~llaY   78 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN----INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAY   78 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE----CCCceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence            456666667888999999999986532        2334444    455666665333     345677776 4569999


Q ss_pred             ecCCCceeeeeeccCCCCceEEeCC----CCcEEEEecCc-eEEeccCCccc
Q 036585          246 SVRSGKEVASWMSFDTEPPVIKWAP----GSLMFVTGSSE-LSFWIPDLSKL  292 (304)
Q Consensus       246 d~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~s~~~d-~~iw~~~~~~~  292 (304)
                      |+.+..-+..- .-...++++.+-.    +..+++.|+.- +.-++.+.+.+
T Consensus        79 DV~~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   79 DVENNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             EcccCchhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence            99776543322 2345677777632    34566666655 77777766543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.20  E-value=0.29  Score=40.24  Aligned_cols=121  Identities=9%  Similarity=0.080  Sum_probs=69.9

Q ss_pred             eEEEEecCCcEEEEeeCCCeEEEEEcCCCc--eeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585          177 NVVKFSNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA  254 (304)
Q Consensus       177 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~  254 (304)
                      +.+-|...++.+++ ...|.+.=|-+....  ....+.  ....++|.++.||+|.+.||.--.+++|.+++....+...
T Consensus        26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfd--m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFD--MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceee--ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence            34555544444433 333444445443222  122222  1356799999999999999999999999999984433322


Q ss_pred             ee----eccCCCCceEEeCCCCcEEEEecCceEEeccC--CccccccccCCC
Q 036585          255 SW----MSFDTEPPVIKWAPGSLMFVTGSSELSFWIPD--LSKLGAYVGRNR  300 (304)
Q Consensus       255 ~~----~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~--~~~~~~~~~~~~  300 (304)
                      .+    +.....|.+..|+......+.....+.+|...  .+.++....++.
T Consensus       103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~  154 (657)
T KOG2377|consen  103 EYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNL  154 (657)
T ss_pred             HHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhccc
Confidence            22    33345588889987744444333346666543  344444444443

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=95.20  E-value=0.99  Score=40.03  Aligned_cols=110  Identities=6%  Similarity=0.132  Sum_probs=63.1

Q ss_pred             eEEEEecCCcEEEEeeCCC-----eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc
Q 036585          177 NVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK  251 (304)
Q Consensus       177 ~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~  251 (304)
                      ..+.|-|+|..+++-..||     .|.++. ++|-.-..+....+........+|+-....++.+ ..+.|.+|-.++..
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh  327 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH  327 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEc-cCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence            3488999999999866554     355665 2332222222222344456667777666555544 45679999887654


Q ss_pred             eeeeeeccCCCCceEEeCCCC--cEEEEecCceEEeccC
Q 036585          252 EVASWMSFDTEPPVIKWAPGS--LMFVTGSSELSFWIPD  288 (304)
Q Consensus       252 ~~~~~~~~~~~i~~~~~~~~~--~~l~s~~~d~~iw~~~  288 (304)
                      -.-...-.-..+.-+.|+|..  ..+++++..|..-.++
T Consensus       328 WYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f~  366 (1243)
T COG5290         328 WYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVFFS  366 (1243)
T ss_pred             EEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEEee
Confidence            322222234456778999954  4555555554433333

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.15  E-value=0.15  Score=26.42  Aligned_cols=41  Identities=17%  Similarity=0.216  Sum_probs=29.2

Q ss_pred             CCCcEEEEec-CCCcEEEEecCCCceeeeeeccCCCCceEEeC
Q 036585          228 PEGMFVISGS-GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWA  269 (304)
Q Consensus       228 ~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  269 (304)
                      |++++|+++. .++.|.++|..+++.+..+.. ......++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence            5777777665 578899999998888887765 3444555553

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.08  E-value=0.51  Score=39.09  Aligned_cols=87  Identities=13%  Similarity=0.193  Sum_probs=58.5

Q ss_pred             ecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc-EEEEEEcCC-C---------------C
Q 036585           53 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR-VVLLSLCSS-K---------------D  115 (304)
Q Consensus        53 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~-~---------------~  115 (304)
                      +......+.+++.+|.+++.++...   -|.|.++|+.++..++.+++-.+. +.-+..... .               .
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDs---lGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDS---LGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcC---CCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence            3344456889999999887777655   899999999999888888765442 111111111 0               1


Q ss_pred             --EEEEcccCCeEEEEeCCcceeeceEEE
Q 036585          116 --CFISGSLDRTVLLWDQRAEKCQGLLRV  142 (304)
Q Consensus       116 --~l~~~~~dg~i~iwd~~~~~~~~~~~~  142 (304)
                        +++-+-..|.|-||.++++..+..+..
T Consensus       380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence              234456778899999988877766654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.05  E-value=0.0032  Score=51.30  Aligned_cols=144  Identities=10%  Similarity=0.116  Sum_probs=96.8

Q ss_pred             cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec
Q 036585          104 RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN  183 (304)
Q Consensus       104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (304)
                      ......|.|.+.-++.++.+..+..||-..... ....                              .++....++|..
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~-le~n------------------------------~tg~aldm~wDk   84 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI-LELN------------------------------PTGKALDMAWDK   84 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhhhhccee-cccC------------------------------CchhHhhhhhcc
Confidence            344567788777788888888888888443222 1111                              123445577777


Q ss_pred             CCcEEE-EeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCC
Q 036585          184 DGRLML-LTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTE  262 (304)
Q Consensus       184 ~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~  262 (304)
                      ++..++ .+-..+.+.+||+.+.. ...+..  +....-.-+.|++....++.+...|.+.|++..+.+.+...-.|..+
T Consensus        85 egdvlavlAek~~piylwd~n~ey-tqqLE~--gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RR  161 (615)
T KOG2247|consen   85 EGDVLAVLAEKTGPIYLWDVNSEY-TQQLES--GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRR  161 (615)
T ss_pred             ccchhhhhhhcCCCeeechhhhhh-HHHHhc--cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccc
Confidence            766544 45677899999986532 222221  11122222789999999999999999999999887776666559999


Q ss_pred             CceEEeCCCCcEEEEecCc
Q 036585          263 PPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       263 i~~~~~~~~~~~l~s~~~d  281 (304)
                      +++++|.+.+..+...+..
T Consensus       162 gtq~av~lEd~vil~dcd~  180 (615)
T KOG2247|consen  162 GTQIAVTLEDYVILCDCDN  180 (615)
T ss_pred             eeEEEecccceeeecCcHH
Confidence            9999999988666554433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.03  E-value=1.9  Score=38.76  Aligned_cols=76  Identities=16%  Similarity=0.236  Sum_probs=52.0

Q ss_pred             CCceEEEEecCCcEEEEeeCCCeEEEEEcC----------CCce---eEEEEe-----CCCCCCcceEEEEcCC---CcE
Q 036585          174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSF----------RGTL---LSTYNV-----KPVSRNSTLEASFSPE---GMF  232 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~----------~~~~---~~~~~~-----~~~~~~~i~~~~~s~~---~~~  232 (304)
                      -.|..+.++|+|.+++..+..|-. |..+.          .|+.   .+++..     .......|..+.|+|.   +.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            467889999999999988886643 33332          1111   112211     1124457889999995   578


Q ss_pred             EEEecCCCcEEEEecCCC
Q 036585          233 VISGSGDGSVHAWSVRSG  250 (304)
Q Consensus       233 l~~~~~dg~i~v~d~~~~  250 (304)
                      |+.-..|+.+|+||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            888889999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.77  E-value=0.19  Score=41.25  Aligned_cols=168  Identities=15%  Similarity=0.139  Sum_probs=95.9

Q ss_pred             ecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee-eec-ccccc----cEE-EEEEcCCCCEEEEcccCCe
Q 036585           53 INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS-RYF-KGHHD----RVV-LLSLCSSKDCFISGSLDRT  125 (304)
Q Consensus        53 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~l~~~~~dg~  125 (304)
                      +......+..+-..|+++.+..-+    ...+.++++.+.... +.+ ....+    .|+ .+..-..|.-++.+..||.
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~----g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~  291 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRT----GSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL  291 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEec----CCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence            444456788889999999988887    567888887654321 111 11011    122 1122234556778888888


Q ss_pred             EEEE-eCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585          126 VLLW-DQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       126 i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  204 (304)
                      |.-| |.+.+.. ..+...                     +.+.  -....+..+.-..+.+-+++-+.+|++.++....
T Consensus       292 vsQWFdvr~~~~-p~l~h~---------------------R~f~--l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~  347 (733)
T COG4590         292 VSQWFDVRRDGQ-PHLNHI---------------------RNFK--LAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS  347 (733)
T ss_pred             eeeeeeeecCCC-Ccceee---------------------eccc--cCcccceeeccccccceEEEEcCCCceeeeeccc
Confidence            8777 4443322 111110                     0010  1112333333334456677777888888877544


Q ss_pred             CceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCcee
Q 036585          205 GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV  253 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~  253 (304)
                      .+.+-.-.    .-..+.-+++||.+.++++-. .|.|+++.+++..+-
T Consensus       348 ~~~lL~~~----~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~Pe  391 (733)
T COG4590         348 EKLLLFER----AYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNPE  391 (733)
T ss_pred             Ccceehhh----hhcCcceeeeCcccchheeec-CCceEEEEecCCCCC
Confidence            43332221    223455689999999998764 567999998876553

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=94.73  E-value=0.97  Score=34.46  Aligned_cols=151  Identities=12%  Similarity=0.077  Sum_probs=76.2

Q ss_pred             EEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc------ccccEEEEEEcC
Q 036585           39 IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG------HHDRVVLLSLCS  112 (304)
Q Consensus        39 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~  112 (304)
                      -.+||+.+++....-....--...-.+-+||+.+.+|+.......+++++..+.........      ....--...-.|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            45788887664322111222233345778999999998743356688888654111111111      111222344457


Q ss_pred             CCCEEEEcccCC-eEEEEeCCcc-eeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEE
Q 036585          113 SKDCFISGSLDR-TVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLL  190 (304)
Q Consensus       113 ~~~~l~~~~~dg-~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (304)
                      ||+.|+.|+... +.-+|.-+.. .....+.......                    + .....----+...|+|+.|+.
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~--------------------~-~~~~nlYP~~~llPdG~lFi~  186 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTS--------------------D-TLPNNLYPFVHLLPDGNLFIF  186 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhh--------------------c-cCccccCceEEEcCCCCEEEE
Confidence            899888887763 2233332111 0000000000000                    0 000111224667899999988


Q ss_pred             eeCCCeEEEEEcCCCceeEEEE
Q 036585          191 TTMEGHIHVLDSFRGTLLSTYN  212 (304)
Q Consensus       191 ~~~dg~i~~~d~~~~~~~~~~~  212 (304)
                      +..++  .+||..+.+.++.+.
T Consensus       187 an~~s--~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  187 ANRGS--IIYDYKTNTVVRTLP  206 (243)
T ss_pred             EcCCc--EEEeCCCCeEEeeCC
Confidence            88764  467888777666655

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.69  E-value=1.9  Score=34.90  Aligned_cols=26  Identities=4%  Similarity=0.087  Sum_probs=21.4

Q ss_pred             cEEEEEEcCCCCEEEEcccCCeEEEEe
Q 036585          104 RVVLLSLCSSKDCFISGSLDRTVLLWD  130 (304)
Q Consensus       104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd  130 (304)
                      ..++|+|.|+++++++ ...|.|++++
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~   28 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD   28 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence            3578999999977665 5589999999

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=94.65  E-value=2.3  Score=35.80  Aligned_cols=33  Identities=6%  Similarity=0.076  Sum_probs=24.7

Q ss_pred             cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcc
Q 036585          102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAE  134 (304)
Q Consensus       102 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  134 (304)
                      -...+.++|.|++++|++--..|.|++++..+.
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~   61 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG   61 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence            345688999999977766544699999876544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PLN02193 nitrile-specifier protein

Probab=94.64  E-value=2.5  Score=36.11  Aligned_cols=66  Identities=15%  Similarity=0.227  Sum_probs=36.9

Q ss_pred             CCcEEEEeeCC----CeEEEEEcCCCceeEEEEe--CCCCCCcceEEEEcCCCcEEEEecCC--------------CcEE
Q 036585          184 DGRLMLLTTME----GHIHVLDSFRGTLLSTYNV--KPVSRNSTLEASFSPEGMFVISGSGD--------------GSVH  243 (304)
Q Consensus       184 ~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d--------------g~i~  243 (304)
                      +++.++.++.+    ..+.+||+.+.+....-..  .+.......++  .-++++++.|+..              +.+.
T Consensus       328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~  405 (470)
T PLN02193        328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA--AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTF  405 (470)
T ss_pred             CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE--EECCEEEEECCccCCccccccCccceeccEE
Confidence            56666666654    4689999988765433221  01111112222  2366777777743              2478


Q ss_pred             EEecCCCc
Q 036585          244 AWSVRSGK  251 (304)
Q Consensus       244 v~d~~~~~  251 (304)
                      +||+.+.+
T Consensus       406 ~~D~~t~~  413 (470)
T PLN02193        406 ALDTETLQ  413 (470)
T ss_pred             EEEcCcCE
Confidence            88887654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.48  E-value=1.4  Score=37.21  Aligned_cols=79  Identities=14%  Similarity=0.173  Sum_probs=51.4

Q ss_pred             CceEEEEecCCcEEEEeeCCCeEEEEE---------cCCCceeEEEEeC--------CCCCCcceEEEEcCCC---cEEE
Q 036585          175 DANVVKFSNDGRLMLLTTMEGHIHVLD---------SFRGTLLSTYNVK--------PVSRNSTLEASFSPEG---MFVI  234 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d---------~~~~~~~~~~~~~--------~~~~~~i~~~~~s~~~---~~l~  234 (304)
                      .|..+..++.|..++..+.+|.+.++=         .++|+........        ....-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            466788899999999988888655542         1234322221110        0122346678999975   5677


Q ss_pred             EecCCCcEEEEecCCCcee
Q 036585          235 SGSGDGSVHAWSVRSGKEV  253 (304)
Q Consensus       235 ~~~~dg~i~v~d~~~~~~~  253 (304)
                      .-+.|+.||+||+.....+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            7778999999999776544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.23  E-value=0.13  Score=45.80  Aligned_cols=171  Identities=12%  Similarity=0.109  Sum_probs=87.5

Q ss_pred             cccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEcc--Cceee-----eecccccccEEEEEEcC---CCCEEEEccc
Q 036585           54 NSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLH--DNKYS-----RYFKGHHDRVVLLSLCS---SKDCFISGSL  122 (304)
Q Consensus        54 ~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~--~~~~~-----~~~~~~~~~v~~~~~~~---~~~~l~~~~~  122 (304)
                      ++..+.+-.+.|.. +...+.  -.   -|.+.||++.  .|+..     .........+.-+.|.|   +..++..+..
T Consensus       129 kgf~G~v~dl~fah~~~pk~~--~~---vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~  203 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR--RL---VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK  203 (1283)
T ss_pred             hcCCCCcccccccccCChHHH--HH---hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence            34455666666643 112222  11   4677888875  34322     22222233445555554   6667778888


Q ss_pred             CCeEEEEeCCcceeeceEEEeccc--eeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEE
Q 036585          123 DRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL  200 (304)
Q Consensus       123 dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  200 (304)
                      ++.+++....+... ..+..+...  -+++-                    ..+.+.--..||||..|+.++.||.+++|
T Consensus       204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~--------------------~~g~~~l~~lSpDGtv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFF--------------------AEGVLKLASLSPDGTVFAWAISDGSVGFY  262 (1283)
T ss_pred             CCceeEeeechHHH-HHHHhcCCCcccHHHH--------------------hhchhhheeeCCCCcEEEEeecCCcccee
Confidence            88888877654433 222211110  00000                    00111112379999999999999998888


Q ss_pred             EcC-----CCceeEEEEeCCCCC-CcceEEEEcCCC---------cEEEEec-CCCcEEEEecCCCcee
Q 036585          201 DSF-----RGTLLSTYNVKPVSR-NSTLEASFSPEG---------MFVISGS-GDGSVHAWSVRSGKEV  253 (304)
Q Consensus       201 d~~-----~~~~~~~~~~~~~~~-~~i~~~~~s~~~---------~~l~~~~-~dg~i~v~d~~~~~~~  253 (304)
                      .+.     ...++...+   .|. .+-.|.-+..+.         .++++++ .+..+++|.....+++
T Consensus       263 Qiyi~g~~~~rclhewk---phd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  263 QIYITGKIVHRCLHEWK---PHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeeeccccHhhhhccC---CCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            753     223333344   233 232222233221         2344444 4556899987776665

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.21  E-value=0.68  Score=43.23  Aligned_cols=160  Identities=12%  Similarity=0.160  Sum_probs=90.7

Q ss_pred             eCCCeEEEEecCCcceeeeecccccceeEEEEc--------cCCCeEEEEecCCCCCceEEEEccCceee---eec----
Q 036585           34 SDDESIRLYDVTAATCLKTINSKKYGVDLVCFT--------SHPTTVIYSSKNGWDESLRLLSLHDNKYS---RYF----   98 (304)
Q Consensus        34 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~l~~~~~~~~d~~i~vwd~~~~~~~---~~~----   98 (304)
                      +-|+.+.+|+.+++.....+.+-...|..+..-        |.=+++++.+.   --.|.++-+.-.+..   ..+    
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~ilgV~~~~~~~~~~~f~~~~  172 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIVILGVSFDEFTGELSIFNTSF  172 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc---cceEEEEEEEeccccCcccccccce
Confidence            346789999999988888888766666666542        33345555554   667777755432211   111    


Q ss_pred             --ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEe-cCCCCC
Q 036585           99 --KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSV-GGDISD  175 (304)
Q Consensus        99 --~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  175 (304)
                        ....-.|.++....+|+.|++|- ||  .+|.+.-......+...   +-.+.....++..--..  +..+ ..+..+
T Consensus       173 ~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~r---c~Kiclt~s~ls~lvPs--~~~~~~~~~dp  244 (1311)
T KOG1900|consen  173 KISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSR---CRKICLTKSVLSSLVPS--LLSVPGSSKDP  244 (1311)
T ss_pred             eeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcc---cccccCchhHHHHhhhh--hhcCCCCCCCc
Confidence              11234678888777887777665 45  45544211111111000   00000000000000000  1112 256679


Q ss_pred             ceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585          176 ANVVKFSNDGRLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  204 (304)
                      |..+......+.+.+-+..|+|..||+..
T Consensus       245 I~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  245 IRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeEeccccceeeeeccCceEEEEEccC
Confidence            99999999999999999999999999865

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.17  E-value=2.3  Score=33.63  Aligned_cols=182  Identities=13%  Similarity=0.124  Sum_probs=93.0

Q ss_pred             ceEEEEccCceeeeeccc------ccccEEEEEEcCCC-----CEEEEc-ccCCeEEEEeCCcceeeceEEEeccceeEe
Q 036585           83 SLRLLSLHDNKYSRYFKG------HHDRVVLLSLCSSK-----DCFISG-SLDRTVLLWDQRAEKCQGLLRVQGRPAAAY  150 (304)
Q Consensus        83 ~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~-----~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  150 (304)
                      .|.+||+.+++.++.+.-      ....+..+.+....     .+++.+ ...+.|.++|+.+++..+.....    +..
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~----~~~  110 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNS----FSP  110 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCG----CTT
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCC----cce
Confidence            666777777776555431      23466777776522     233332 33458999999998876555331    111


Q ss_pred             cCCCeEEEecCCCeEEEEecCCCCCceEEEEec---CCcEEEEeeCCCeEEEEEcCC-----Cc---------eeEEEEe
Q 036585          151 DDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN---DGRLMLLTTMEGHIHVLDSFR-----GT---------LLSTYNV  213 (304)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~d~~~-----~~---------~~~~~~~  213 (304)
                      .|....+.....   .+...   ..+..++.+|   +++.|.-....+. ++|.+.+     ..         ....+- 
T Consensus       111 ~p~~~~~~i~g~---~~~~~---dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-  182 (287)
T PF03022_consen  111 DPDAGPFTIGGE---SFQWP---DGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLG-  182 (287)
T ss_dssp             S-SSEEEEETTE---EEEET---TSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEE-
T ss_pred             eccccceeccCc---eEecC---CCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceecc-
Confidence            111111111110   11111   2266667655   6777776665442 2333221     11         111221 


Q ss_pred             CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc---eeeeeecc---CCCCceEEeCC--CCcEEEEe
Q 036585          214 KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK---EVASWMSF---DTEPPVIKWAP--GSLMFVTG  278 (304)
Q Consensus       214 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~---~~~i~~~~~~~--~~~~l~s~  278 (304)
                        ........++++++|..+++--..+.|..|+....-   ....+...   -..+.++.+.+  +|.+.+.+
T Consensus       183 --~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  183 --DKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             --E---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             --ccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence              112355678999999999898899999999987521   12222111   24567888888  66544443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.11  E-value=0.4  Score=24.78  Aligned_cols=30  Identities=20%  Similarity=0.361  Sum_probs=23.8

Q ss_pred             cCCcEEEEee-CCCeEEEEEcCCCceeEEEE
Q 036585          183 NDGRLMLLTT-MEGHIHVLDSFRGTLLSTYN  212 (304)
Q Consensus       183 ~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~  212 (304)
                      |++++|+++. .++.|.++|..+++.+..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            5677666655 57899999999998888877

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PRK13684 Ycf48-like protein; Provisional

Probab=94.06  E-value=2.7  Score=34.09  Aligned_cols=110  Identities=20%  Similarity=0.202  Sum_probs=64.7

Q ss_pred             CCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC-CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585          174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  252 (304)
                      ..++.+.+.++++.++++ ..|.+++=....+..-.....+ ......+..+.+.|++..++++ .+|.+. .....++.
T Consensus       215 ~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~t  291 (334)
T PRK13684        215 RRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKT  291 (334)
T ss_pred             ccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCC
Confidence            567889999999876665 4576653233444332322211 0122457788999988766555 567554 34444554


Q ss_pred             eeeee---ccCCCCceEEeCCCCcEEEEecCc-eEEec
Q 036585          253 VASWM---SFDTEPPVIKWAPGSLMFVTGSSE-LSFWI  286 (304)
Q Consensus       253 ~~~~~---~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~  286 (304)
                      .....   .-....+.+.|..+++.+++|... +--|+
T Consensus       292 W~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~  329 (334)
T PRK13684        292 WEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV  329 (334)
T ss_pred             CeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence            33332   222357788888888888877766 44443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=94.00  E-value=3.3  Score=34.95  Aligned_cols=107  Identities=11%  Similarity=0.216  Sum_probs=60.7

Q ss_pred             CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC----CCCCCcceEEEEcCCC------cEEEEec----
Q 036585          172 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----PVSRNSTLEASFSPEG------MFVISGS----  237 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----~~~~~~i~~~~~s~~~------~~l~~~~----  237 (304)
                      .-.....|+|.|||++|++--..|.|++++..++.........    .........++++|+-      .+|+...    
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            3456788999999986665544799999986554322211110    1135678899999874      2444432    


Q ss_pred             ------CCCcEEEEecCCC-------ce-eeeee---ccCCCCceEEeCCCCcEEEEecC
Q 036585          238 ------GDGSVHAWSVRSG-------KE-VASWM---SFDTEPPVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       238 ------~dg~i~v~d~~~~-------~~-~~~~~---~~~~~i~~~~~~~~~~~l~s~~~  280 (304)
                            ....|.-|.+...       +. +..+.   .|.  -..|+|.|||.+.++.++
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD  165 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECC
Confidence                  1223444554321       11 11111   132  357889999986665544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.99  E-value=0.64  Score=40.56  Aligned_cols=74  Identities=18%  Similarity=0.301  Sum_probs=44.4

Q ss_pred             cCCcEEEEeeCCCeEEEEEcCC----CceeEEEEeC-------------------CCCCCcceEEEEcC----CCcEEEE
Q 036585          183 NDGRLMLLTTMEGHIHVLDSFR----GTLLSTYNVK-------------------PVSRNSTLEASFSP----EGMFVIS  235 (304)
Q Consensus       183 ~~~~~l~~~~~dg~i~~~d~~~----~~~~~~~~~~-------------------~~~~~~i~~~~~s~----~~~~l~~  235 (304)
                      ++...++++..||.+.......    +.........                   .........+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3666788888888888777653    2222211110                   01123455566666    7789999


Q ss_pred             ecCCCcEEEEecCCCceeeee
Q 036585          236 GSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       236 ~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      .+.|+.+|+||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999985554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.64  E-value=1.5  Score=29.73  Aligned_cols=119  Identities=9%  Similarity=0.153  Sum_probs=67.1

Q ss_pred             EEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec---
Q 036585          107 LLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN---  183 (304)
Q Consensus       107 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---  183 (304)
                      .-.|......|++++.-|+|.|++..........                   .+..+...++.   ..|++++-.+   
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-------------------~~~~i~~LNin---~~italaaG~l~~   60 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-------------------QDSDISFLNIN---QEITALAAGRLKP   60 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCcccccccc-------------------ccCceeEEECC---CceEEEEEEecCC
Confidence            3456556667888888899999987654322111                   11122222222   3455554332   


Q ss_pred             --CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC----CCcEEEEecCCCcEEEEecCCCcee
Q 036585          184 --DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP----EGMFVISGSGDGSVHAWSVRSGKEV  253 (304)
Q Consensus       184 --~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~----~~~~l~~~~~dg~i~v~d~~~~~~~  253 (304)
                        +...|+.|+. ..+..||+.....+....    ....+.++.+-.    +..++++| .+..|.-||..-.+..
T Consensus        61 ~~~~D~LliGt~-t~llaYDV~~N~d~Fyke----~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   61 DDGRDCLLIGTQ-TSLLAYDVENNSDLFYKE----VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIF  130 (136)
T ss_pred             CCCcCEEEEecc-ceEEEEEcccCchhhhhh----CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEE
Confidence              3456666665 478999998776655444    335556555532    23444444 4667888886544433

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.55  E-value=5.2  Score=37.71  Aligned_cols=32  Identities=13%  Similarity=0.141  Sum_probs=26.5

Q ss_pred             eecceeeEeecccCcEEEEeeCCCeEEEEecC
Q 036585           14 LELSEEILQSMEVGIYLVTASDDESIRLYDVT   45 (304)
Q Consensus        14 ~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~   45 (304)
                      +......+.+.+.-.++|.+...|.|+++-..
T Consensus        34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCCCCcceeeccccceEEEEEecccEEEeccc
Confidence            34456678888999999999999999999754

>PRK13684 Ycf48-like protein; Provisional

Probab=93.36  E-value=3.6  Score=33.34  Aligned_cols=110  Identities=10%  Similarity=0.072  Sum_probs=63.6

Q ss_pred             CCCceEEEEecCCcEEEEeeCCCeEEEE-EcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc
Q 036585          173 ISDANVVKFSNDGRLMLLTTMEGHIHVL-DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK  251 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~-d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~  251 (304)
                      ...+..+.+.|++.+++++. .|.+..- | ..++.-.....  .....++.+.+.|+++.++++ ..|.+++=....+.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~--~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQR--NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeC--CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence            35678889999887665554 4554432 2 22222222221  355788999999999877766 46766432334444


Q ss_pred             eeeeeecc----CCCCceEEeCCCCcEEEEecCceEEecc
Q 036585          252 EVASWMSF----DTEPPVIKWAPGSLMFVTGSSELSFWIP  287 (304)
Q Consensus       252 ~~~~~~~~----~~~i~~~~~~~~~~~l~s~~~d~~iw~~  287 (304)
                      .-.....+    ...+..+.+.|++..++++.....+...
T Consensus       247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~  286 (334)
T PRK13684        247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSK  286 (334)
T ss_pred             ccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeC
Confidence            32222111    2346788999988877766554444433

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.29  E-value=4.8  Score=34.52  Aligned_cols=176  Identities=13%  Similarity=0.065  Sum_probs=74.3

Q ss_pred             CcEEEEe---eCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccc
Q 036585           27 GIYLVTA---SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHD  103 (304)
Q Consensus        27 ~~~l~~~---~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~  103 (304)
                      |-+++..   ...+...+.|.+ |.....+.........+...++|.+++..     ...++.+|+. |+.+..+.....
T Consensus       115 gl~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~-----~~~~~e~D~~-G~v~~~~~l~~~  187 (477)
T PF05935_consen  115 GLYFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGS-----GNRLYEIDLL-GKVIWEYDLPGG  187 (477)
T ss_dssp             -EEEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEE-----BTEEEEE-TT---EEEEEE--TT
T ss_pred             cEEEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEec-----CCceEEEcCC-CCEEEeeecCCc
Confidence            4345555   234456666743 55554444332222226667788777655     4577888875 444333321111


Q ss_pred             c---EEEEEEcCCCCEEEEccc-------------CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585          104 R---VVLLSLCSSKDCFISGSL-------------DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF  167 (304)
Q Consensus       104 ~---v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (304)
                      .   =..+...|+|++|+.+..             .-.|..+| .+++.+......................  ......
T Consensus       188 ~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~--~~~~~~  264 (477)
T PF05935_consen  188 YYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPY--GDISGS  264 (477)
T ss_dssp             EE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--S--SSSS-S
T ss_pred             ccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccc--cccccC
Confidence            1   134667789998887762             12355555 6666555544322110000000000000  000000


Q ss_pred             EecCCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585          168 SVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYN  212 (304)
Q Consensus       168 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  212 (304)
                      .-...---++++.+.+ ++.+++++-.-..|...|.++++....+.
T Consensus       265 ~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg  310 (477)
T PF05935_consen  265 GGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG  310 (477)
T ss_dssp             STTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred             CCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence            0000112467899988 55555555555588899988888776665

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.22  E-value=5.5  Score=37.75  Aligned_cols=164  Identities=12%  Similarity=0.231  Sum_probs=95.5

Q ss_pred             ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEc-CCC-------CEEEEcccCCeEEEEe
Q 036585           59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLC-SSK-------DCFISGSLDRTVLLWD  130 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~-------~~l~~~~~dg~i~iwd  130 (304)
                      .-..+-+-|.=.+....-    |+.+.+|+.+++.....+.+-...|..+..- |..       ++++....--.|.++-
T Consensus        80 ~~~~mGiFpeI~RaWiTi----Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg  155 (1311)
T KOG1900|consen   80 CKTDMGIFPEIGRAWITI----DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG  155 (1311)
T ss_pred             eeeeeccchhhcceEEEe----CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence            334455556555555554    9999999999987777777777777776643 332       2333333334455554


Q ss_pred             CCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEc----CCC-
Q 036585          131 QRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS----FRG-  205 (304)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~----~~~-  205 (304)
                      +.-.........                +.+    .+.+......|+++....+|+.|++|- ||  .+|.+    ..+ 
T Consensus       156 V~~~~~~~~~~~----------------f~~----~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gW  212 (1311)
T KOG1900|consen  156 VSFDEFTGELSI----------------FNT----SFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGW  212 (1311)
T ss_pred             EEeccccCcccc----------------ccc----ceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCch
Confidence            322211110000                000    023333456788888888888666654 44  34432    111 


Q ss_pred             --c-e-------------eEEE-EeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585          206 --T-L-------------LSTY-NVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       206 --~-~-------------~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~  249 (304)
                        + +             +.++ .....+..+|..+......+.+++-++.|.|.+||+..
T Consensus       213 f~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  213 FGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence              1 0             0111 11113567899999998888999999999999999965

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.20  E-value=0.15  Score=45.42  Aligned_cols=107  Identities=16%  Similarity=0.232  Sum_probs=66.7

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEE-----------EccCCCeEEEEecCCCCCceEEEEcc-----
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVC-----------FTSHPTTVIYSSKNGWDESLRLLSLH-----   90 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~~~~d~~i~vwd~~-----   90 (304)
                      .-++..+-.++.+++.+..+... ..+.+|...+..++           .+|||+.++.+..   ||.++.|.+.     
T Consensus       195 ~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~---dG~v~f~Qiyi~g~~  270 (1283)
T KOG1916|consen  195 KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS---DGSVGFYQIYITGKI  270 (1283)
T ss_pred             cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeec---CCccceeeeeeeccc
Confidence            45677777888888877654332 33445655444433           5899999999998   8888888663     


Q ss_pred             Cceeeeeccccc-ccEEEEEEcCCCC---------EEEEc-ccCCeEEEEeCCcceee
Q 036585           91 DNKYSRYFKGHH-DRVVLLSLCSSKD---------CFISG-SLDRTVLLWDQRAEKCQ  137 (304)
Q Consensus        91 ~~~~~~~~~~~~-~~v~~~~~~~~~~---------~l~~~-~~dg~i~iwd~~~~~~~  137 (304)
                      .-.+....+.|. .+-.|.-++.+..         +++++ ..+..+++|.-..-++.
T Consensus       271 ~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  271 VHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            234556667777 3433433553322         33343 34567888887666655

>PLN02153 epithiospecifier protein

Probab=93.08  E-value=4.1  Score=33.14  Aligned_cols=66  Identities=11%  Similarity=0.149  Sum_probs=33.5

Q ss_pred             cCcEEEEeeCC-------CeEEEEecCCcceeeeecc----ccc---ceeEEEEccCCCeEEEEecCC--CCCceEEEEc
Q 036585           26 VGIYLVTASDD-------ESIRLYDVTAATCLKTINS----KKY---GVDLVCFTSHPTTVIYSSKNG--WDESLRLLSL   89 (304)
Q Consensus        26 ~~~~l~~~~~d-------~~i~vw~~~~~~~~~~~~~----~~~---~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd~   89 (304)
                      ++++++.|+.+       ..+.+||+.+.+-. .+..    ...   ....+.+  +++.++.|+..+  .-..+.+||.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~  108 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWS-IAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT  108 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEE-EcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence            46677777753       24778887764322 1111    110   1112222  566666666421  1135778888


Q ss_pred             cCcee
Q 036585           90 HDNKY   94 (304)
Q Consensus        90 ~~~~~   94 (304)
                      .+.+-
T Consensus       109 ~t~~W  113 (341)
T PLN02153        109 VKNEW  113 (341)
T ss_pred             CCCEE
Confidence            77643

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=92.99  E-value=4.9  Score=33.83  Aligned_cols=31  Identities=16%  Similarity=0.484  Sum_probs=25.2

Q ss_pred             CcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585          219 NSTLEASFSPEGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~  249 (304)
                      ..|.+++..+..+.+++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            4488999999889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.98  E-value=3.6  Score=32.17  Aligned_cols=104  Identities=10%  Similarity=0.031  Sum_probs=65.6

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccc--cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee---eecccc
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKK--YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS---RYFKGH  101 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~---~~~~~~  101 (304)
                      +++...+..+.-++|.|+.+......+..-.  +--.++  .-.|++..++.-   |.-+.+.|+.+.+..   ..+...
T Consensus        96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadl---ddgfLivdvsdpssP~lagrya~~  170 (370)
T COG5276          96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADL---DDGFLIVDVSDPSSPQLAGRYALP  170 (370)
T ss_pred             ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeec---cCcEEEEECCCCCCceeeeeeccC
Confidence            6777888788889999998765443332211  223333  346888877775   666778888765432   223333


Q ss_pred             cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee
Q 036585          102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ  137 (304)
Q Consensus       102 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  137 (304)
                      ...-..++.+  |++-+.+..|+-+.+.|+......
T Consensus       171 ~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP  204 (370)
T COG5276         171 GGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP  204 (370)
T ss_pred             CCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC
Confidence            3333455554  667777788899999998765443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.88  E-value=1.8  Score=38.36  Aligned_cols=35  Identities=9%  Similarity=0.217  Sum_probs=29.0

Q ss_pred             cccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee
Q 036585          102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC  136 (304)
Q Consensus       102 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  136 (304)
                      ...++++.-+|.++-++.+..||.|++|+....+.
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q   48 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ   48 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence            34577888899999999999999999999765544

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.79  E-value=0.69  Score=38.14  Aligned_cols=169  Identities=11%  Similarity=0.036  Sum_probs=92.6

Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      +......|..+-..|+++.++.-+. ..+.++++.+.......-....+      .                 .....|+
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dsp------g-----------------~~~~~Vt  271 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSP------G-----------------DSRHQVT  271 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCC------C-----------------chHHHHH
Confidence            4444566778888999998777655 67888887665433221000000      0                 0001122


Q ss_pred             -EEEEecCCcEEEEeeCCCeEEEE-EcCCC-ce-eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCcee
Q 036585          178 -VVKFSNDGRLMLLTTMEGHIHVL-DSFRG-TL-LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV  253 (304)
Q Consensus       178 -~~~~~~~~~~l~~~~~dg~i~~~-d~~~~-~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~  253 (304)
                       .+..-..|..+++++.||-|.-| |.+.+ .+ ........-...++..+.=..+.+-+++-+.+|++.++.....+.+
T Consensus       272 e~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l  351 (733)
T COG4590         272 EQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL  351 (733)
T ss_pred             HHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce
Confidence             12223346668888888887766 54432 21 1111111112233333322223455777788888888775444432


Q ss_pred             eeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585          254 ASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSK  291 (304)
Q Consensus       254 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~  291 (304)
                      -. ..-...+.-+++||.+.++++-... ++++.++.+.
T Consensus       352 L~-~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~  389 (733)
T COG4590         352 LF-ERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRN  389 (733)
T ss_pred             eh-hhhhcCcceeeeCcccchheeecCCceEEEEecCCC
Confidence            22 2222356778999999999877666 8888776554

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.65  E-value=0.63  Score=23.66  Aligned_cols=30  Identities=7%  Similarity=0.139  Sum_probs=20.8

Q ss_pred             cccceeEEEEccCCCeEEEEecCCCC--CceEEE
Q 036585           56 KKYGVDLVCFTSHPTTVIYSSKNGWD--ESLRLL   87 (304)
Q Consensus        56 ~~~~v~~~~~~~~~~~l~~~~~~~~d--~~i~vw   87 (304)
                      ....-....|+|||+.|+.++..  +  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~--~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNR--NDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEEC--T--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecC--CCCCCcCEE
Confidence            34456788999999999998864  4  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.46  E-value=4.5  Score=32.01  Aligned_cols=182  Identities=12%  Similarity=0.134  Sum_probs=88.8

Q ss_pred             eEEEEecCCcceeeeeccc------ccceeEEEEccCCC----eEEEEecCCCCCceEEEEccCceeeeeccccc-----
Q 036585           38 SIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPT----TVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH-----  102 (304)
Q Consensus        38 ~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~----~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-----  102 (304)
                      .|.+||+.+++.++++.-+      ...+..+.+.....    .++.-+..+ .+.|.|+|+.+++.-+.+..+.     
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~-~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG-GPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT-TCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC-cCcEEEEEccCCcEEEEecCCcceecc
Confidence            6889999999988877643      34567777766322    344444322 5689999999987655443221     


Q ss_pred             --------------ccEEEEEEcC---CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585          103 --------------DRVVLLSLCS---SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus       103 --------------~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                                    +.+..++.+|   +++.|+-....+ -++|.+.+......-.....   ..          ...  
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~---~~----------~~~--  177 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQ---AL----------ASQ--  177 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH----H----------HHT--
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccc---cc----------ccc--
Confidence                          1233344433   333333322211 11121111100000000000   00          000  


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCc---eeEEEEeCCCCCCcceEEEEcC--CCcEEEEe
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT---LLSTYNVKPVSRNSTLEASFSP--EGMFVISG  236 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~  236 (304)
                      +..+.........++++++|.++++--..+.|..|+..+.-   ....+...+..-..+..+.+.+  +|.+.+..
T Consensus       178 v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  178 VQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             -EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             ceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            00111111345668899999988888889999999987521   2233332222235667888888  66544443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.37  E-value=5.5  Score=32.84  Aligned_cols=199  Identities=12%  Similarity=0.012  Sum_probs=104.5

Q ss_pred             cEEEEeeCCCeEEEEecCCcceeeeeccc--ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccc-cc
Q 036585           28 IYLVTASDDESIRLYDVTAATCLKTINSK--KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH-DR  104 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~  104 (304)
                      ..++.+..+|.|.-.|.++++.+-....-  ...+..-.+..+|+ +++++.   ++.++.+|..+++......... ..
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~---~g~~y~ld~~~G~~~W~~~~~~~~~  144 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSW---DGKLYALDASTGTLVWSRNVGGSPY  144 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecc---cceEEEEECCCCcEEEEEecCCCeE
Confidence            44555577888888888888765332221  12223333333665 666665   8889999998888777666444 11


Q ss_pred             EEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC
Q 036585          105 VVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND  184 (304)
Q Consensus       105 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  184 (304)
                      +.......++ .++..+.++.+...|..+++..........  ....                   ......     ..+
T Consensus       145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~--~~~~-------------------~~~~~~-----~~~  197 (370)
T COG1520         145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP--LSLS-------------------IYGSPA-----IAS  197 (370)
T ss_pred             EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc--cccc-------------------cccCce-----eec
Confidence            1222222233 444444678888888888877666543321  0000                   000001     122


Q ss_pred             CcEEEEeeC--CCeEEEEEcCCCceeEEEEeCCCCC-CcceEE-EEcC----CCcEEEEecCCCcEEEEecCCCceeeee
Q 036585          185 GRLMLLTTM--EGHIHVLDSFRGTLLSTYNVKPVSR-NSTLEA-SFSP----EGMFVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       185 ~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~-~~i~~~-~~s~----~~~~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      + .++.+..  ++.+.-.|..+|+............ ..+... .+..    .+.-++.++.++.+...|..+++.+-++
T Consensus       198 ~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~  276 (370)
T COG1520         198 G-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSF  276 (370)
T ss_pred             c-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEE
Confidence            3 2444444  5567777777777766643111111 101000 1100    1122355566777888888888877666


Q ss_pred             ec
Q 036585          257 MS  258 (304)
Q Consensus       257 ~~  258 (304)
                      ..
T Consensus       277 ~~  278 (370)
T COG1520         277 PA  278 (370)
T ss_pred             ec
Confidence            54

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.24  E-value=8.6  Score=34.81  Aligned_cols=74  Identities=14%  Similarity=0.193  Sum_probs=52.5

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCceEEEEccC----------cee--e-ee-------c-ccccccEEEEEEcCC---
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----------NKY--S-RY-------F-KGHHDRVVLLSLCSS---  113 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~----------~~~--~-~~-------~-~~~~~~v~~~~~~~~---  113 (304)
                      -.|..+.++|+|++++..+.    ..|.|..+..          ++.  . ++       + ..+...|..+.|+|.   
T Consensus        85 f~v~~i~~n~~g~~lal~G~----~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGP----RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcC----CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence            46889999999999999984    4555555531          111  1 11       1 134458899999995   


Q ss_pred             CCEEEEcccCCeEEEEeCCcce
Q 036585          114 KDCFISGSLDRTVLLWDQRAEK  135 (304)
Q Consensus       114 ~~~l~~~~~dg~i~iwd~~~~~  135 (304)
                      +..|+.-..|+++|+||+....
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCC
Confidence            5788888999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.22  E-value=2.3  Score=37.20  Aligned_cols=72  Identities=17%  Similarity=0.267  Sum_probs=44.9

Q ss_pred             cCCCeEEEEecCCCCCceEEEEccC----ceeee-----------eccc-----------ccccEEEEEEcC----CCCE
Q 036585           67 SHPTTVIYSSKNGWDESLRLLSLHD----NKYSR-----------YFKG-----------HHDRVVLLSLCS----SKDC  116 (304)
Q Consensus        67 ~~~~~l~~~~~~~~d~~i~vwd~~~----~~~~~-----------~~~~-----------~~~~v~~~~~~~----~~~~  116 (304)
                      ++...++++..   ||.+.......    +....           .+.+           ....+..+++++    +..+
T Consensus       156 ~~~~~l~v~~~---dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (547)
T PF11715_consen  156 DSEANLVVSLQ---DGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTF  232 (547)
T ss_dssp             -SSSBEEEEES---SS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTE
T ss_pred             cCCCEEEEEEC---CCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCE
Confidence            46777888887   88888887764    11110           0110           123455566665    6779


Q ss_pred             EEEcccCCeEEEEeCCcceeeceEE
Q 036585          117 FISGSLDRTVLLWDQRAEKCQGLLR  141 (304)
Q Consensus       117 l~~~~~dg~i~iwd~~~~~~~~~~~  141 (304)
                      +++.+.|+++|+||+.+++++....
T Consensus       233 l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  233 LFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999999865543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=91.90  E-value=5.5  Score=31.80  Aligned_cols=220  Identities=12%  Similarity=0.123  Sum_probs=107.4

Q ss_pred             CcEEEEeeCCCeEEEEecCC--cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee----------
Q 036585           27 GIYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY----------   94 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~----------   94 (304)
                      +++|+.|..+| +.+.+..+  .+..+.+  +...|.++...+..+.|++-+..  ...++++++..-..          
T Consensus        13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk--~~~L~~~~L~~L~~~~~~~~~~~~   87 (302)
T smart00036       13 GKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGK--KPQLYSHPLSALVEKKEALGSARL   87 (302)
T ss_pred             CcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCC--cceEEEEEHHHhhhhhhccCCccc
Confidence            36899999999 55555554  2333333  34589999999999888888732  33499999843221          


Q ss_pred             -----eeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcc--e--eeceE---E-E-eccc-eeE----ecCCC
Q 036585           95 -----SRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAE--K--CQGLL---R-V-QGRP-AAA----YDDQG  154 (304)
Q Consensus        95 -----~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~--~--~~~~~---~-~-~~~~-~~~----~~~~~  154 (304)
                           ....-++......+...... ..++++....+|.++.....  +  ....+   . . +... ...    +....
T Consensus        88 ~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T smart00036       88 VIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPG  167 (302)
T ss_pred             cccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceE
Confidence                 00111233333333333221 23444445566666543222  1  11110   0 0 0011 111    11234


Q ss_pred             eEEEecCCCeEEEEecCC---------------CC-CceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCC
Q 036585          155 LVFGYEKGPLDIFSVGGD---------------IS-DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  218 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~---------------~~-~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  218 (304)
                      ..++...+...+.++..+               .. ...++..-+++.+|+ +-.+ ...+.|....+.......  .-.
T Consensus       168 lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Ll-c~~~-~~v~Vn~~G~~~~r~~~l--~w~  243 (302)
T smart00036      168 ICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLL-CYDE-FGVFVNLYGKRRSRNPIL--HWE  243 (302)
T ss_pred             EEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEE-EECc-EEEEEeCCCCccccceEE--EcC
Confidence            555555423333333210               00 122222233444433 3332 344555432122221111  134


Q ss_pred             CcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec
Q 036585          219 NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS  258 (304)
Q Consensus       219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  258 (304)
                      ....++++.  ..+|++-.. ..|.|+++.+++.++++..
T Consensus       244 ~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~  280 (302)
T smart00036      244 FMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD  280 (302)
T ss_pred             CcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence            455667776  357776654 4599999999998888763

Unpublished observations.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=91.85  E-value=2.1  Score=26.85  Aligned_cols=42  Identities=14%  Similarity=0.137  Sum_probs=29.0

Q ss_pred             eeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585          191 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       191 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                      +..+|.+..||..+++......    .-...+.+++++|+.+++.+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~----~L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLD----GLYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEE----EESSEEEEEE-TTSSEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehh----CCCccCeEEEcCCCCEEEEE
Confidence            3456889999999987655555    23456789999999987766

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=91.79  E-value=4.7  Score=30.84  Aligned_cols=117  Identities=15%  Similarity=0.173  Sum_probs=65.4

Q ss_pred             EEEecCCcEEEEeeC-C--CeEEEEEcCC----CceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC-cEEEEecCCC
Q 036585          179 VKFSNDGRLMLLTTM-E--GHIHVLDSFR----GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVHAWSVRSG  250 (304)
Q Consensus       179 ~~~~~~~~~l~~~~~-d--g~i~~~d~~~----~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~v~d~~~~  250 (304)
                      -.+-+||+++.+|+. +  ..+++++..+    ......... ......--....-|||+.|+.|+.+. ...+|.-+..
T Consensus        72 g~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~-m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~  150 (243)
T PF07250_consen   72 GAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND-MQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGP  150 (243)
T ss_pred             cCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc-ccCCCccccceECCCCCEEEEeCcCCCcccccCCccC
Confidence            356689999888765 2  3578887543    111110000 01222222344557999999888764 3445543221


Q ss_pred             -ceeee---ee-----ccCCCCceEEeCCCCcEEEEecCceEEeccCCccc-cccc
Q 036585          251 -KEVAS---WM-----SFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKL-GAYV  296 (304)
Q Consensus       251 -~~~~~---~~-----~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~~-~~~~  296 (304)
                       .....   +.     ....----+-..|+|++++.+..+-.||++..+++ +++.
T Consensus       151 ~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  151 GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLP  206 (243)
T ss_pred             CCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCC
Confidence             11111   11     01122235667899999999999989999987764 4443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=91.60  E-value=8.1  Score=33.18  Aligned_cols=115  Identities=16%  Similarity=0.204  Sum_probs=56.4

Q ss_pred             EEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC-------------CCcEEEE
Q 036585          179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-------------DGSVHAW  245 (304)
Q Consensus       179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------------dg~i~v~  245 (304)
                      +...++|.+++...  ..+..+|+ .|+.+..+.........-..+..-|+|++|+.+..             .-.|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            66778888776555  78889997 47776666643211111234677889998887761             1125555


Q ss_pred             ecCCCceeeeee--ccC-------------------------CCCceEEeCC-CCcEEEEecCc--eEEeccCCcccccc
Q 036585          246 SVRSGKEVASWM--SFD-------------------------TEPPVIKWAP-GSLMFVTGSSE--LSFWIPDLSKLGAY  295 (304)
Q Consensus       246 d~~~~~~~~~~~--~~~-------------------------~~i~~~~~~~-~~~~l~s~~~d--~~iw~~~~~~~~~~  295 (304)
                      | .+|+.+..+.  .|-                         ..++++.+.+ ++.+++|+-.-  |-..+....++...
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence            5 5666544431  010                         1367899988 55566655544  44444445555544


Q ss_pred             cc
Q 036585          296 VG  297 (304)
Q Consensus       296 ~~  297 (304)
                      .+
T Consensus       309 lg  310 (477)
T PF05935_consen  309 LG  310 (477)
T ss_dssp             ES
T ss_pred             eC
Confidence            44

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.53  E-value=7.2  Score=32.47  Aligned_cols=151  Identities=9%  Similarity=-0.005  Sum_probs=80.6

Q ss_pred             eeEEEEccCCCeEEEEecCCCCCceEE-EEccCcee--eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee
Q 036585           60 VDLVCFTSHPTTVIYSSKNGWDESLRL-LSLHDNKY--SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC  136 (304)
Q Consensus        60 v~~~~~~~~~~~l~~~~~~~~d~~i~v-wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  136 (304)
                      ...+..++++..++++.    .|.+.. ||-  ++.  ...-......++++.+.+++..++++ ..|.+.. ....++.
T Consensus       241 f~~v~~~~dG~~~~vg~----~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~  312 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSS----RGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLT  312 (398)
T ss_pred             eeeEEEcCCCCEEEEEC----CccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCc
Confidence            34456677777777776    444332 332  221  11112234568899999998877665 4455433 3333321


Q ss_pred             ec--eEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC
Q 036585          137 QG--LLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  214 (304)
Q Consensus       137 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  214 (304)
                      ..  .+....                        .......+..+.|.+++..+ +++..|.+.... ..|+.-......
T Consensus       313 ~~~~~f~~~~------------------------~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s~-D~G~tW~~~~~~  366 (398)
T PLN00033        313 EEDFDFEEAD------------------------IKSRGFGILDVGYRSKKEAW-AAGGSGILLRST-DGGKSWKRDKGA  366 (398)
T ss_pred             ccccceeecc------------------------cCCCCcceEEEEEcCCCcEE-EEECCCcEEEeC-CCCcceeEcccc
Confidence            11  111100                        00112347788898887754 455667665553 344433332211


Q ss_pred             CCCCCcceEEEEcCCCcEEEEecCCCcEEEE
Q 036585          215 PVSRNSTLEASFSPEGMFVISGSGDGSVHAW  245 (304)
Q Consensus       215 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~  245 (304)
                      .......+.+.|.++++.+++| .+|.|.-|
T Consensus       367 ~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        367 DNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             CCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            2334578899998877766666 57766544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.22  E-value=2.9  Score=30.14  Aligned_cols=31  Identities=13%  Similarity=0.070  Sum_probs=25.3

Q ss_pred             ccEEEEEEcCCC------CEEEEcccCCeEEEEeCCc
Q 036585          103 DRVVLLSLCSSK------DCFISGSLDRTVLLWDQRA  133 (304)
Q Consensus       103 ~~v~~~~~~~~~------~~l~~~~~dg~i~iwd~~~  133 (304)
                      ..+.+++|+|.|      -+|++.+.++.+.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999954      2788889999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.08  E-value=3.1  Score=29.96  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=24.9

Q ss_pred             CCceEEEEecCC------cEEEEeeCCCeEEEEEcCC
Q 036585          174 SDANVVKFSNDG------RLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       174 ~~v~~~~~~~~~------~~l~~~~~dg~i~~~d~~~  204 (304)
                      ..+..++|||.|      -.|++-+.+|.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            467889999954      4788889999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=89.87  E-value=8.4  Score=30.43  Aligned_cols=232  Identities=15%  Similarity=0.169  Sum_probs=125.0

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecC------Cc-ceeeeecc-----cccceeEEEEccCCCe------------EEEEe
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVT------AA-TCLKTINS-----KKYGVDLVCFTSHPTT------------VIYSS   76 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~------------l~~~~   76 (304)
                      +.+.|.+.+-++....+...+||..      .. .++-++..     .....+.+.|+.....            ++.++
T Consensus        28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t  107 (336)
T TIGR03118        28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT  107 (336)
T ss_pred             eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence            6677778777777777889999986      11 22333331     1235666777643332            56666


Q ss_pred             cCCCCCceEEEEccCcee-----eeecc-cccccE-EEEEEcC--CCCEEEEc-ccCCeEEEEeCCcceeec--eEEEec
Q 036585           77 KNGWDESLRLLSLHDNKY-----SRYFK-GHHDRV-VLLSLCS--SKDCFISG-SLDRTVLLWDQRAEKCQG--LLRVQG  144 (304)
Q Consensus        77 ~~~~d~~i~vwd~~~~~~-----~~~~~-~~~~~v-~~~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~~~--~~~~~~  144 (304)
                      +   ||+|.=|...-+..     ...+. .....| ..+++..  .+.+|+.+ -..++|.++|-.-.+...  .+.-+.
T Consensus       108 E---dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~  184 (336)
T TIGR03118       108 E---DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA  184 (336)
T ss_pred             C---CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence            6   99999998533221     11121 112333 3455543  34555554 457889888754332211  011000


Q ss_pred             cceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEE
Q 036585          145 RPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  224 (304)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~  224 (304)
                      .+ .-+.|-           .+..+.+ .-.|+-..-.+++..=+.+..-|.|-+||+ .++.++++... +.-...+.+
T Consensus       185 iP-agyAPF-----------nIqnig~-~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~-g~LNaPWG~  249 (336)
T TIGR03118       185 LP-AGYAPF-----------NVQNLGG-TLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASS-GRLNAPWGL  249 (336)
T ss_pred             CC-CCCCCc-----------ceEEECC-eEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccC-CcccCCcee
Confidence            00 001110           0111100 001111222333333444556689999996 67888887632 233445567


Q ss_pred             EEcC------CCcEEEEecCCCcEEEEecCCCceeeeeeccCC------CCceEEeCC
Q 036585          225 SFSP------EGMFVISGSGDGSVHAWSVRSGKEVASWMSFDT------EPPVIKWAP  270 (304)
Q Consensus       225 ~~s~------~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------~i~~~~~~~  270 (304)
                      +..|      .+.+|+---.||+|..||..+++.+..+....+      .++.|.|..
T Consensus       250 a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       250 AIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             eeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            7765      455666556799999999999988777754332      357788865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=89.86  E-value=9.1  Score=30.84  Aligned_cols=25  Identities=4%  Similarity=-0.088  Sum_probs=16.1

Q ss_pred             cCCcEEEEeeCCC----eEEEEEcCCCce
Q 036585          183 NDGRLMLLTTMEG----HIHVLDSFRGTL  207 (304)
Q Consensus       183 ~~~~~l~~~~~dg----~i~~~d~~~~~~  207 (304)
                      .++++.+.|+.++    .+..||..+.+.
T Consensus       170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       170 LQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             ECCEEEEEcCCCCccccceEEEecCCCee
Confidence            3566677776553    356888877654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.85  E-value=16  Score=33.64  Aligned_cols=121  Identities=14%  Similarity=0.148  Sum_probs=72.7

Q ss_pred             CCCceEEEEe---c----CCcEEEEeeCCCeEEEEEcCC---------------CceeEEEEeCCCCCCcceEEEEcC-C
Q 036585          173 ISDANVVKFS---N----DGRLMLLTTMEGHIHVLDSFR---------------GTLLSTYNVKPVSRNSTLEASFSP-E  229 (304)
Q Consensus       173 ~~~v~~~~~~---~----~~~~l~~~~~dg~i~~~d~~~---------------~~~~~~~~~~~~~~~~i~~~~~s~-~  229 (304)
                      ..+|..|+|.   .    ...+|++-. ...+.|+...-               ..++..+........+...++|+| +
T Consensus        79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   79 GSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            3567777776   2    123444443 34566665111               123334443333456778899999 5


Q ss_pred             CcEEEEecCCCcEEEEecCCCc-----eeeeeeccCCCC----------ceEEeCCCCcEEEEecCc-eEEeccCCcccc
Q 036585          230 GMFVISGSGDGSVHAWSVRSGK-----EVASWMSFDTEP----------PVIKWAPGSLMFVTGSSE-LSFWIPDLSKLG  293 (304)
Q Consensus       230 ~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~~~i----------~~~~~~~~~~~l~s~~~d-~~iw~~~~~~~~  293 (304)
                      .+.||..+..|...||++....     .+.....+.+.+          ..+.|.++...|+.++.. +.+++++.....
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~  237 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQT  237 (765)
T ss_pred             cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCCcc
Confidence            5689999999999999992211     111111112222          378898887777777777 888888776553


Q ss_pred             c
Q 036585          294 A  294 (304)
Q Consensus       294 ~  294 (304)
                      .
T Consensus       238 ~  238 (765)
T PF10214_consen  238 E  238 (765)
T ss_pred             c
Confidence            3

These proteins are found in fungi.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=89.79  E-value=9.3  Score=30.80  Aligned_cols=109  Identities=11%  Similarity=0.150  Sum_probs=50.9

Q ss_pred             cCcEEEEeeCCC-----eEEEEecCCcce---eeeecccccce--eEEEEccCCCeEEEEecC--CCCCceEEEEccCce
Q 036585           26 VGIYLVTASDDE-----SIRLYDVTAATC---LKTINSKKYGV--DLVCFTSHPTTVIYSSKN--GWDESLRLLSLHDNK   93 (304)
Q Consensus        26 ~~~~l~~~~~d~-----~i~vw~~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~l~~~~~~--~~d~~i~vwd~~~~~   93 (304)
                      ++.+++.|+.++     .+..+|+.+.+-   ...+..-..+.  .+++ .-+++..+.|+..  .....+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~-~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSAC-YKDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEE-EECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            456667776542     466667665442   11111111111  1222 2256666666531  113467888888765


Q ss_pred             eeee--cccccccEEEEEEcCCCCEEEEcccCC----eEEEEeCCccee
Q 036585           94 YSRY--FKGHHDRVVLLSLCSSKDCFISGSLDR----TVLLWDQRAEKC  136 (304)
Q Consensus        94 ~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~  136 (304)
                      -...  +.. ...........++++.+.|+.++    .+..||+++.+-
T Consensus       151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            3221  211 11111222223566777776653    245677766543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.76  E-value=10  Score=31.27  Aligned_cols=151  Identities=22%  Similarity=0.171  Sum_probs=81.4

Q ss_pred             eEEEEecCCCCCceEEEEccCceeeeecccc--cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecccee
Q 036585           71 TVIYSSKNGWDESLRLLSLHDNKYSRYFKGH--HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA  148 (304)
Q Consensus        71 ~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  148 (304)
                      .++++..   +|.|.-.|..+++.+.....-  ...+..-.+..+|+ ++.++.++.++.+|.++++......... . .
T Consensus        70 ~v~~~~~---~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~-~  143 (370)
T COG1520          70 TVYVGTR---DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S-P  143 (370)
T ss_pred             eEEEecC---CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C-e
Confidence            4444455   888888888888755433211  12222222333564 7778888888899988888777665443 0 0


Q ss_pred             EecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC
Q 036585          149 AYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  228 (304)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~  228 (304)
                                                .+..-..-.++ .+...+.+|.+.-.|..+++..............+..--...
T Consensus       144 --------------------------~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~  196 (370)
T COG1520         144 --------------------------YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIA  196 (370)
T ss_pred             --------------------------EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceee
Confidence                                      00111122233 344444778888888888888777653221011111100112


Q ss_pred             CCcEEEEecC--CCcEEEEecCCCceeee
Q 036585          229 EGMFVISGSG--DGSVHAWSVRSGKEVAS  255 (304)
Q Consensus       229 ~~~~l~~~~~--dg~i~v~d~~~~~~~~~  255 (304)
                      ++ .++.+..  ++.+.-.|..++.....
T Consensus       197 ~~-~vy~~~~~~~~~~~a~~~~~G~~~w~  224 (370)
T COG1520         197 SG-TVYVGSDGYDGILYALNAEDGTLKWS  224 (370)
T ss_pred             cc-eEEEecCCCcceEEEEEccCCcEeee
Confidence            23 4444444  55667777777766544

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=89.74  E-value=4  Score=37.29  Aligned_cols=85  Identities=15%  Similarity=0.180  Sum_probs=56.0

Q ss_pred             cEEEEeeCCCeEEEEEcCCCceeEE-EEeCCCCCCcceEEEEcCCCcEEEE-ecCCC-----cEEEEecCCC-ceeeeee
Q 036585          186 RLMLLTTMEGHIHVLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVIS-GSGDG-----SVHAWSVRSG-KEVASWM  257 (304)
Q Consensus       186 ~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg-----~i~v~d~~~~-~~~~~~~  257 (304)
                      ++..+....+.|.+-|......... +.    ...++..-+|||||++|+- .+.++     .|++-|+.+. ..+-.+.
T Consensus       320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~----~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~  395 (912)
T TIGR02171       320 KLAFRNDVTGNLAYIDYTKGASRAVEIE----DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLP  395 (912)
T ss_pred             eEEEEEcCCCeEEEEecCCCCceEEEec----CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEee
Confidence            4444443446888888766555443 43    6788889999999999987 34333     4899999753 3344555


Q ss_pred             ccCCCCceEEeCCCCcE
Q 036585          258 SFDTEPPVIKWAPGSLM  274 (304)
Q Consensus       258 ~~~~~i~~~~~~~~~~~  274 (304)
                      -....|..-...++|..
T Consensus       396 ve~aaiprwrv~e~gdt  412 (912)
T TIGR02171       396 VENAAIPRWRVLENGDT  412 (912)
T ss_pred             cccccccceEecCCCCe
Confidence            55667776666776653

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=89.70  E-value=16  Score=33.50  Aligned_cols=71  Identities=14%  Similarity=0.111  Sum_probs=51.0

Q ss_pred             CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEE----EeC--------C----CCCCcceEEEEcCCCcEEEEe
Q 036585          173 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY----NVK--------P----VSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~--------~----~~~~~i~~~~~s~~~~~l~~~  236 (304)
                      ...|.++....-+..++....||+|.++|-.+.+.+...    ...        .    ....++..++|||.+.-++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            456777887778889999999999999998777555444    100        0    011134458899999888888


Q ss_pred             cCCCcEE
Q 036585          237 SGDGSVH  243 (304)
Q Consensus       237 ~~dg~i~  243 (304)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            8888865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=89.46  E-value=8.8  Score=30.19  Aligned_cols=76  Identities=13%  Similarity=0.181  Sum_probs=43.8

Q ss_pred             CCceEEEEecCCcEEEEee------CCCeEEEEEcCCCceeEEEEeC-CCCCCcceEEEEcC-CC-cEEEEec-CCC--c
Q 036585          174 SDANVVKFSNDGRLMLLTT------MEGHIHVLDSFRGTLLSTYNVK-PVSRNSTLEASFSP-EG-MFVISGS-GDG--S  241 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~~s~-~~-~~l~~~~-~dg--~  241 (304)
                      +.|+.+.|..+.+.++.|.      ....+..||+.+......-... ..-.++++.+.+.. |+ ++.++|. .++  .
T Consensus        37 G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~  116 (281)
T PF12768_consen   37 GTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTF  116 (281)
T ss_pred             EEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCce
Confidence            5789999987777777664      3456888998776532221100 12346777777643 33 3444443 333  4


Q ss_pred             EEEEecCC
Q 036585          242 VHAWSVRS  249 (304)
Q Consensus       242 i~v~d~~~  249 (304)
                      |..||=.+
T Consensus       117 l~~~dGs~  124 (281)
T PF12768_consen  117 LMKYDGSS  124 (281)
T ss_pred             EEEEcCCc
Confidence            66676443

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=89.34  E-value=12  Score=31.53  Aligned_cols=32  Identities=28%  Similarity=0.301  Sum_probs=25.6

Q ss_pred             CCceEEEEecCCcEEEEeeCCCeEEEEEcCCC
Q 036585          174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG  205 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  205 (304)
                      ..|..++..+..+.+++.+.+|.|.+|++..+
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence            44888999998999999999999999999753

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.30  E-value=18  Score=33.37  Aligned_cols=115  Identities=12%  Similarity=0.014  Sum_probs=71.6

Q ss_pred             CCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCc--eeEEEEeCCCCC----------CcceEEEEcCCCcEEEEecCCC
Q 036585          174 SDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKPVSR----------NSTLEASFSPEGMFVISGSGDG  240 (304)
Q Consensus       174 ~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~dg  240 (304)
                      .+...++|+|. .+.||+....|...||++....  ....+.......          ..-..+.|.++-+.|+.++. .
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence            46678999984 4689999999999999992111  111111110111          22336889888888888864 4


Q ss_pred             cEEEEecCCCceeeee--eccCCCCceEEeCCC--CcEEEEecCceEEeccCC
Q 036585          241 SVHAWSVRSGKEVASW--MSFDTEPPVIKWAPG--SLMFVTGSSELSFWIPDL  289 (304)
Q Consensus       241 ~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~--~~~l~s~~~d~~iw~~~~  289 (304)
                      .+.++|+++......+  ......|..+.-+|+  +..++-.+..+...+...
T Consensus       225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence            5899999876553212  234467888888887  455555555554444433

These proteins are found in fungi.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=88.68  E-value=12  Score=30.54  Aligned_cols=68  Identities=7%  Similarity=-0.015  Sum_probs=31.5

Q ss_pred             cCcEEEEeeCC-CeEEEEecCCc----ceeeeecccccceeEEEEccCCCeEEEEecCCC--------CCceEEEEccCc
Q 036585           26 VGIYLVTASDD-ESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--------DESLRLLSLHDN   92 (304)
Q Consensus        26 ~~~~l~~~~~d-~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--------d~~i~vwd~~~~   92 (304)
                      ++++.+.|+.. ..+.++|+...    ..+..+.... ........-+++..+.|+....        -..+..||..++
T Consensus        17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~-R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~   95 (346)
T TIGR03547        17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGP-RNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN   95 (346)
T ss_pred             CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCC-cccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence            45566656543 35666775321    2222222111 1111122336667777765210        135777888776


Q ss_pred             ee
Q 036585           93 KY   94 (304)
Q Consensus        93 ~~   94 (304)
                      +-
T Consensus        96 ~W   97 (346)
T TIGR03547        96 SW   97 (346)
T ss_pred             EE
Confidence            53

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02153 epithiospecifier protein

Probab=88.62  E-value=12  Score=30.48  Aligned_cols=69  Identities=7%  Similarity=0.084  Sum_probs=33.5

Q ss_pred             cCcEEEEeeCC-----CeEEEEecCCccee--eeecc---cccceeEEEEccCCCeEEEEecCCC--------CCceEEE
Q 036585           26 VGIYLVTASDD-----ESIRLYDVTAATCL--KTINS---KKYGVDLVCFTSHPTTVIYSSKNGW--------DESLRLL   87 (304)
Q Consensus        26 ~~~~l~~~~~d-----~~i~vw~~~~~~~~--~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~--------d~~i~vw   87 (304)
                      ++++++.|+.+     ..+.+||..+.+-.  ..+..   ........+...+++.++.|+....        -..+.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            45667777753     24777887764322  22210   1111111222235566666664210        1257788


Q ss_pred             EccCcee
Q 036585           88 SLHDNKY   94 (304)
Q Consensus        88 d~~~~~~   94 (304)
                      |..+.+-
T Consensus       165 d~~~~~W  171 (341)
T PLN02153        165 NIADGKW  171 (341)
T ss_pred             ECCCCeE
Confidence            8877653

>PRK13615 lipoprotein LpqB; Provisional

Probab=88.25  E-value=17  Score=31.84  Aligned_cols=139  Identities=9%  Similarity=-0.007  Sum_probs=77.5

Q ss_pred             EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC
Q 036585          106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG  185 (304)
Q Consensus       106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  185 (304)
                      .+++.++++..++....++.+.++...... .....                               ...++.-.|.++|
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~-~~~~~-------------------------------~~~Lt~PS~d~~g  384 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGDRDA-VLLDT-------------------------------RPGLVAPSLDAQG  384 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCCCcc-eeecc-------------------------------CCccccCcCcCCC
Confidence            678889999988887777777777554111 11111                               1124445666666


Q ss_pred             cEEEEeeCCCeEEEEEcC-CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec---CCCcEEEEecC--CCc--ee----
Q 036585          186 RLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVHAWSVR--SGK--EV----  253 (304)
Q Consensus       186 ~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~v~d~~--~~~--~~----  253 (304)
                       .+.+.-.....++.... ++.. ......-.....|..+..|+||..++.-.   ..+.|.|--+.  .+.  .+    
T Consensus       385 -~vWtv~~g~~~~l~~~~~~G~~-~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p  462 (557)
T PRK13615        385 -YVWSTPASDPRGLVAWGPDGVG-HPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTP  462 (557)
T ss_pred             -CEEEEeCCCceEEEEecCCCce-EEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeecc
Confidence             44444333333333332 2333 22232222446899999999998876643   23456653332  221  12    


Q ss_pred             eeeeccCCCCceEEeCCCCcEEEEe
Q 036585          254 ASWMSFDTEPPVIKWAPGSLMFVTG  278 (304)
Q Consensus       254 ~~~~~~~~~i~~~~~~~~~~~l~s~  278 (304)
                      ..+..-...+.++.|..++.+.+.+
T Consensus       463 ~~l~~~l~~v~sl~W~~~~~laVl~  487 (557)
T PRK13615        463 LELLASPGTPLDATWVDELDVATLT  487 (557)
T ss_pred             EEcccCcCcceeeEEcCCCEEEEEe
Confidence            1121123478999999999876655

>smart00564 PQQ beta-propeller repeat

Probab=88.23  E-value=1.5  Score=21.09  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=20.5

Q ss_pred             EEEEeeCCCeEEEEEcCCCceeEEE
Q 036585          187 LMLLTTMEGHIHVLDSFRGTLLSTY  211 (304)
Q Consensus       187 ~l~~~~~dg~i~~~d~~~~~~~~~~  211 (304)
                      .+++++.+|.+..+|.++|+....+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5778888999999999998876543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.12  E-value=16  Score=31.33  Aligned_cols=94  Identities=9%  Similarity=-0.013  Sum_probs=53.0

Q ss_pred             cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecccee--EecCCCeEEEecCCCeEEEEecCCCCCceEEEE
Q 036585          104 RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAA--AYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF  181 (304)
Q Consensus       104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  181 (304)
                      .|..+..++.|..++-.+.+|.+.++=.+.-.....+.-......  .+.-+..+          |.- ...-.+...+|
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~----------fts-s~~ltl~Qa~W  173 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF----------FTS-STSLTLKQAAW  173 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccccee----------ecc-CCceeeeeccc
Confidence            577788899999999888888766654332222222221111110  11111111          111 11223556788


Q ss_pred             ecCC---cEEEEeeCCCeEEEEEcCCCcee
Q 036585          182 SNDG---RLMLLTTMEGHIHVLDSFRGTLL  208 (304)
Q Consensus       182 ~~~~---~~l~~~~~dg~i~~~d~~~~~~~  208 (304)
                      +|+.   ..|+.-+.|..|++||+...+.+
T Consensus       174 HP~S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  174 HPSSILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             cCCccCCceEEEEecCcEEEEEecCCcchh
Confidence            8865   56777888999999998765444

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=88.06  E-value=15  Score=34.29  Aligned_cols=93  Identities=12%  Similarity=0.166  Sum_probs=59.2

Q ss_pred             ceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC------cEEEEecCCCcEEEEecCC
Q 036585          176 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG------MFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~------~~l~~~~~dg~i~v~d~~~  249 (304)
                      ++.+.-.-+...++++-.+|.+..+..........+.........+.|+++.++.      ++++.++.|+.++++.+..
T Consensus       540 ~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p  619 (1205)
T KOG1898|consen  540 VRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDP  619 (1205)
T ss_pred             eEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecC
Confidence            3333333345567777777877777665443344443333456778888888865      6799999999999999986


Q ss_pred             Cceeeee--eccCCCCceEEe
Q 036585          250 GKEVASW--MSFDTEPPVIKW  268 (304)
Q Consensus       250 ~~~~~~~--~~~~~~i~~~~~  268 (304)
                      ..++..+  ++-..++.++.+
T Consensus       620 ~d~l~~ls~q~l~~~~~s~~i  640 (1205)
T KOG1898|consen  620 SDCLQPLSVQGLSSPPESLCI  640 (1205)
T ss_pred             cceEEEccccccCCCccceEE
Confidence            6655554  334444555444

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=88.02  E-value=15  Score=30.88  Aligned_cols=141  Identities=11%  Similarity=0.064  Sum_probs=81.4

Q ss_pred             CcEEEEeeCCCeEEEEecCCcc-----eeeeecccccceeEEEEcc-----CCCeEEEEecCCCCCceEEEEccCc--e-
Q 036585           27 GIYLVTASDDESIRLYDVTAAT-----CLKTINSKKYGVDLVCFTS-----HPTTVIYSSKNGWDESLRLLSLHDN--K-   93 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~~d~~i~vwd~~~~--~-   93 (304)
                      .+.|++||..|.+|||+.....     .+-+.+ -..+|..+..-+     +...|++-.    -..+.+|.+...  . 
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLh----P~kl~vY~v~~~~g~~  111 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLH----PRKLSVYSVSLVDGTV  111 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEec----CCEEEEEEEEecCCCc
Confidence            5689999999999999986433     111111 235777776542     233555544    788999988321  1 


Q ss_pred             ------eeeeccccc--ccEEEEEEcC----C-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585           94 ------YSRYFKGHH--DRVVLLSLCS----S-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE  160 (304)
Q Consensus        94 ------~~~~~~~~~--~~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (304)
                            .+..+..|.  .....+.+-|    . ..++..-+.||.+.+|+-+.......+..                  
T Consensus       112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~------------------  173 (418)
T PF14727_consen  112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD------------------  173 (418)
T ss_pred             ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC------------------
Confidence                  112222232  1223333322    2 35788889999999998665432222211                  


Q ss_pred             CCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEc
Q 036585          161 KGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS  202 (304)
Q Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  202 (304)
                                  ---...+.|.+.-..|++++.+..+.-|..
T Consensus       174 ------------~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  174 ------------FLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ------------CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence                        011123667777777777777777777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	304
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		9e-15
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-14
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-14
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-05
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-14
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-14
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-05
2h9l_A	329	Wdr5delta23 Length = 329		1e-14
2h9l_A	329	Wdr5delta23 Length = 329		4e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-14
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-14
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-05
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-14
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-14
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-14
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-14
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-14
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-14
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-14
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-14
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-14
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-07
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		4e-06
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		5e-06
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-05
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-05

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 41  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 97
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 98  WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 275
Query: 252 EV 253
           E+
Sbjct: 276 EI 277

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 50  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 110 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 140
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 141 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 196
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P    ++  T  + L  W  D SK   L  Y G   
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 241

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 31  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 87
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 88  WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 147
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 148 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 207
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 208 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 265
Query: 252 EV 253
           E+
Sbjct: 266 EI 267

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 40  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 99
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 100 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 130
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 131 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 186
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P    ++  T  + L  W  D SK   L  Y G   
Sbjct: 187 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 231

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 34  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 90
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 91  WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 150
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 151 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 210
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 211 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 268
Query: 252 EV 253
           E+
Sbjct: 269 EI 270

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 43  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 102
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 103 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 133
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 134 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 189
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P    ++  T  + L  W  D SK   L  Y G   
Sbjct: 190 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 234

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 41  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 97
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 98  WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 275
Query: 252 EV 253
           E+
Sbjct: 276 EI 277

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 50  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 110 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 140
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 141 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 196
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P    ++  T  + L  W  D SK   L  Y G   
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 241

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 35  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 91
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 92  WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 269
Query: 252 EV 253
           E+
Sbjct: 270 EI 271

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 44  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 104 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 134
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 135 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 190
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P    ++  T  + L  W  D SK   L  Y G   
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 235

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 52  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 108
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 109 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 168
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 169 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 228
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 229 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 286
Query: 252 EV 253
           E+
Sbjct: 287 EI 288

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 87/225 (38%), Gaps = 42/225 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 61  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 120
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 121 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 151
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 152 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 207
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGR 298
             PPV  +K++P    ++  T  + L  W  D SK   L  Y G 
Sbjct: 208 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGH 250

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 59  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 115
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 116 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 175
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 176 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 235
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 236 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 293
Query: 252 EV 253
           E+
Sbjct: 294 EI 295

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 68  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 127
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 128 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 158
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 159 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 214
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P    ++  T  + L  W  D SK   L  Y G   
Sbjct: 215 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 259

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 36  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 92
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 93  WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 152
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 153 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 212
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 213 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 270
Query: 252 EV 253
           E+
Sbjct: 271 EI 272

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 45  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 104
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 105 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 135
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 136 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 191
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P    ++  T  + L  W  D SK   L  Y G   
Sbjct: 192 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 236

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 35  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 91
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 92  WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 269
Query: 252 EV 253
           E+
Sbjct: 270 EI 271

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 44  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 104 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 134
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 135 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 190
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P    ++  T  + L  W  D SK   L  Y G   
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 235

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 40  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 96
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 97  WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 156
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 157 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 216
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 217 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 274
Query: 252 EV 253
           E+
Sbjct: 275 EI 276

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 49  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 108
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 109 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 139
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 140 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 195
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P    ++  T  + L  W  D SK   L  Y G   
Sbjct: 196 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 240

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 41  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 97
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 98  WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 157
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 275
Query: 252 EV 253
           E+
Sbjct: 276 EI 277

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 50  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 110 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 140
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 141 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 196
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P    ++  T  + L  W  D SK   L  Y G   
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 241

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 57  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 113
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 114 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 173
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 174 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 233
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 234 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 291
Query: 252 EV 253
           E+
Sbjct: 292 EI 293

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 66  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 125
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 126 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 156
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 157 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 212
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P    ++  T  + L  W  D SK   L  Y G   
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 257

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 38  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 94
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 95  WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 272
Query: 252 EV 253
           E+
Sbjct: 273 EI 274

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 38/225 (16%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 107 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 137
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 138 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 193
Query: 261 TEPPV--IKWAPGSLMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P     +  + + +  + D SK   L  Y G   
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 111/242 (45%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L  +S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 38  GEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 94
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 95  WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 272
Query: 252 EV 253
           E+
Sbjct: 273 EI 274

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 38/225 (16%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 107 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 137
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 138 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 193
Query: 261 TEPPV--IKWAPGSLMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P     +  + + +  + D SK   L  Y G   
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 38  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 94
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +  KC   L     P
Sbjct: 95  WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 154
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-K 272
Query: 252 EV 253
           E+
Sbjct: 273 EI 274

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 38/225 (16%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 107 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 137
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 138 DVKTGKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 193
Query: 261 TEPPV--IKWAPGSLMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P     +  + + +  + D SK   L  Y G   
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 111/242 (45%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 38  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 94
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +   C   L     P
Sbjct: 95  WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 215 LDNDLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQT-K 272
Query: 252 EV 253
           E+
Sbjct: 273 EI 274

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 42/227 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 107 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 137
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 138 DVKTGMCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 193
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P    ++  T  ++L  W  D SK   L  Y G   
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNDLKLW--DYSKGKCLKTYTGHKN 238

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 111/242 (45%), Gaps = 20/242 (8%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G +L ++S D+ I+++        KTI+  K G+  V ++S    ++ +S    D++L++
Sbjct: 38  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLKI 94
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   K  +  KGH + V   +     +  +SGS D +V +WD +   C   L     P
Sbjct: 95  WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP 154
Query: 147 AAA--------------YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
            +A              YD    ++    G      +  D    + VKFS +G+ +L  T
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGK 251
           ++  + + D  +G  L TY     +    + A+FS   G +++SGS D  V+ W++++ K
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHK-NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQT-K 272
Query: 252 EV 253
           E+
Sbjct: 273 EI 274

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 42/227 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D+ +++   +D K+ +   GH   +  ++  S  +  +S S D+T+ +WD  + KC   L
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
           +              VF                       F+    L++  + +  + + 
Sbjct: 107 KGHSN---------YVF--------------------CCNFNPQSNLIVSGSFDESVRIW 137
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD 260
           D   G  L T    P   +      F+ +G  ++S S DG    W   SG+ + + +  D
Sbjct: 138 DVKTGMCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-D 193
Query: 261 TEPPV--IKWAPGS--LMFVTGSSELSFWIPDLSK---LGAYVGRNR 300
             PPV  +K++P    ++  T  + L  W  D SK   L  Y G   
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKN 238

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 33/220 (15%)
Query: 28  IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYS-SKNGWDESLRL 86
           + ++TAS D +  L+DV +   L++ +   +G D++C    P+    +    G D+   +
Sbjct: 167 MQILTASGDGTCALWDVESGQLLQSFHG--HGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
             +   +  + F+ H   V  +    S D F SGS D T  L+D RA+          R 
Sbjct: 225 WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD----------RE 274
Query: 147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 206
            A Y  + ++FG                 A+ V FS  GRL+     +  I+V D  +G+
Sbjct: 275 VAIYSKESIIFG-----------------ASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317
Query: 207 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246
            +S       +R STL    SP+G    SGS D ++  W+
Sbjct: 318 RVSIL-FGHENRVSTLRV--SPDGTAFCSGSWDHTLRVWA 354

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 20/216 (9%)
Query: 93  KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK--------CQGLLRVQG 144
           K  R  KGH ++V+ +  C  K   +S S D  V++WD             C  ++    
Sbjct: 55  KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 145 RPAAA------YDDQGLVF-----GYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193
            P+         D++  V+       E       SV    +  +   F+N    +L  + 
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174
Query: 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
           +G   + D   G LL +++         L+ + S  G   +SG  D     W +RSG+ V
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADV-LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV 233
Query: 254 ASWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDL 289
            ++ + +++   +++ P    F +GS + +  + DL
Sbjct: 234 QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 108/239 (45%), Gaps = 23/239 (9%)
Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G  + +ASDD++++L++      L+T+      V  V F+    T+  +S    D++++L
Sbjct: 110 GQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASD---DKTVKL 165
Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RV 142
            +  + +  +   GH   V  ++         S S D+TV LW++  +  Q L      V
Sbjct: 166 WN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 224
Query: 143 QGRP--------AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME 194
           +G          A+A DD+ +      G L + ++ G  S  N V F  DG+ +   + +
Sbjct: 225 RGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVNGVAFRPDGQTIASASDD 283
Query: 195 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
             + + +   G LL T        +S    +FSP+G  + S S D +V  W+ R+G+ +
Sbjct: 284 KTVKLWNR-NGQLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHL 337

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 33/156 (21%)
Query: 95  SRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ 153
           S +  GH   V+ LS+ S + + FISGS D TV LWD         LR+  R    Y   
Sbjct: 198 SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD---------LRITSRAVRTY--- 245
Query: 154 GLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV 213
               G+E          GDI   N VKF  DG+     + +G   + D   G  L  YN 
Sbjct: 246 ---HGHE----------GDI---NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289
Query: 214 KPVSRNSTL----EASFSPEGMFVISGSGDGSVHAW 245
           +P   ++ L      +FS  G  + +G  +G  + W
Sbjct: 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 90/237 (37%), Gaps = 47/237 (19%)
Query: 30  LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV--IYSSKNG-------W 80
           +V+AS D+SI L+ +T        + K YGV     T H   V  +  S +G       W
Sbjct: 398 IVSASRDKSIILWKLTK-------DDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D  LRL  L     +R F GH   V+ ++        +S S DRT+ LW+   E C+  +
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTI 509
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLD--IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH 198
              G     + D      +    L   I S   D      VK  N     L +T+ GH  
Sbjct: 510 SEGGE---GHRDWVSCVRFSPNTLQPTIVSASWD----KTVKVWNLSNCKLRSTLAGHTG 562
Query: 199 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS 255
            + +                      + SP+G    SG  DG V  W +  GK++ S
Sbjct: 563 YVSTV---------------------AVSPDGSLCASGGKDGVVLLWDLAEGKKLYS 598

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 57/240 (23%)
Query: 30  LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV---------IYSSKNGW 80
           L++AS D+++  + +T        + +K+GV +  F  H   V          Y+    W
Sbjct: 33  LLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D++LRL  +   +  + F GH   V+ + +       ISGS D+T+ +W  + +    LL
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 141 -------RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193
                  +V+  P    DD  +          I S G D     +VK  N  +  +    
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVT---------IISAGND----KMVKAWNLNQFQIEADF 192
Query: 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
            GH                    S  +TL AS  P+G  + S   DG +  W++ + K +
Sbjct: 193 IGH-------------------NSNINTLTAS--PDGTLIASAGKDGEIMLWNLAAKKAM 231

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 57/240 (23%)
Query: 30  LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV---------IYSSKNGW 80
           L++AS D+++  + +T        + +K+GV +  F  H   V          Y+    W
Sbjct: 27  LLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 79
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D++LRL  +   +  + F GH   V+ + +       ISGS D+T+ +W  + +    LL
Sbjct: 80  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 139
Query: 141 -------RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193
                  +V+  P    DD  +          I S G D     +VK  N  +  +    
Sbjct: 140 GHNDWVSQVRVVPNEKADDDSVT---------IISAGND----KMVKAWNLNQFQIEADF 186
Query: 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
            GH                    S  +TL AS  P+G  + S   DG +  W++ + K +
Sbjct: 187 IGH-------------------NSNINTLTAS--PDGTLIASAGKDGEIMLWNLAAKKAM 225

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 57/240 (23%)
Query: 30  LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV---------IYSSKNGW 80
           L++AS D+++  + +T        + +K+GV +  F  H   V          Y+    W
Sbjct: 33  LLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D++LRL  +   +  + F GH   V+ + +       ISGS D+T+ +W  + +    LL
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 141 -------RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193
                  +V+  P    DD  +          I S G D     +VK  N  +  +    
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVT---------IISAGND----KMVKAWNLNQFQIEADF 192
Query: 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
            GH                    S  +TL AS  P+G  + S   DG +  W++ + K +
Sbjct: 193 IGH-------------------NSNINTLTAS--PDGTLIASAGKDGEIMLWNLAAKKAM 231

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 57/240 (23%)
Query: 30  LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV---------IYSSKNGW 80
           L++AS D+++  + +T        + +K+GV +  F  H   V          Y+    W
Sbjct: 33  LLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D++LRL  +   +  + F GH   V+ + +       ISGS D+T+ +W  + +    LL
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 141 -------RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193
                  +V+  P    DD  +          I S G D     +VK  N  +  +    
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVT---------IISAGND----KMVKAWNLNQFQIEADF 192
Query: 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
            GH                    S  +TL AS  P+G  + S   DG +  W++ + K +
Sbjct: 193 IGH-------------------NSNINTLTAS--PDGTLIASAGKDGEIMLWNLAAKKAM 231

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 57/240 (23%)
Query: 30  LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV---------IYSSKNGW 80
           L++AS D+++  + +T        + +K+GV +  F  H   V          Y+    W
Sbjct: 33  LLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D++LRL  +   +  + F GH   V+ + +       ISGS D+T+ +W  + +    LL
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL 145
Query: 141 -------RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193
                  +V+  P    DD  +          I S G D     +VK  N  +  +    
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVT---------IISAGND----KMVKAWNLNQFQIEADF 192
Query: 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
            GH                    S  +TL AS  P+G  + S   DG +  W++ + K +
Sbjct: 193 IGH-------------------NSNINTLTAS--PDGTLIASAGKDGEIMLWNLAAKKAM 231

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 33/176 (18%)
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D  +R+  + + K     +GH   +  L    S D  +SGS DRTV +WD R  +C    
Sbjct: 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS--- 200
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
                         L    E G   +    G            DG+ +   +++  + V 
Sbjct: 201 --------------LTLSIEDGVTTVAVSPG------------DGKYIAAGSLDRAVRVW 234
Query: 201 DSFRGTLLSTYNVKPVS----RNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE 252
           DS  G L+   + +  S    ++S     F+ +G  V+SGS D SV  W++++   
Sbjct: 235 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 111/274 (40%), Gaps = 23/274 (8%)
Query: 30  LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 89
           +V+AS+D +I+++D       +T+      V  + F  H   ++ S     D +++L   
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCSA--DMTIKLWDF 179
Query: 90  HDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA 149
              +  R   GH   V  +S+  + D  +S S D+T+ +W+ +   C             
Sbjct: 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF------TGH 233
Query: 150 YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS 209
            +   +V   + G L I S   D +    V  + + +  L      H HV++       S
Sbjct: 234 REWVRMVRPNQDGTL-IASCSNDQTVRVWVVATKECKAEL----REHRHVVECISWAPES 288
Query: 210 TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWA 269
           +Y+    +  S  + S  P G F++SGS D ++  W V +G  + + +  D       W 
Sbjct: 289 SYSSISEATGSETKKSGKP-GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN------WV 341
Query: 270 PGSLMFVTGSSELSFWIPDLSKLGAYVGRNRGCM 303
            G L    G   LS    D   L  +  +N+ CM
Sbjct: 342 RGVLFHSGGKFILS--CADDKTLRVWDYKNKRCM 373

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 97/246 (39%), Gaps = 28/246 (11%)
Query: 30  LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 89
           +++ S D ++++++     C+ T+      V   C   H   V+  S+   D +LR+  +
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSR---DATLRVWDI 226
Query: 90  HDNKYSRYFKGHHDRVVLLSLCSSKDC--FISGSLDRTVLLWDQRAEKCQGLLRVQGRPA 147
              +      GH    V    C   D    +SG+ D  V +WD   E C  L  +QG   
Sbjct: 227 ETGQCLHVLMGH----VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC--LHTLQGHTN 280
Query: 148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL 207
             Y  Q        G LD      D+   N +  +  G   L + ME   ++L S  G  
Sbjct: 281 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKDNILVS--GNA 337
Query: 208 LSTYNVKPVSRNSTLEASFSPEGM------------FVISGSGDGSVHAWSVRSGKEVAS 255
            ST  +  +     L+    P               FVI+ S DG+V  W +++G+ + +
Sbjct: 338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 397
Query: 256 WMSFDT 261
            ++ ++
Sbjct: 398 LVTLES 403

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 88/233 (37%), Gaps = 45/233 (19%)
Query: 30  LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP---TTVIYSS------KNGW 80
           +++AS D++I ++ +T        +   YG+       H    + V+ SS         W
Sbjct: 54  ILSASRDKTIIMWKLTR-------DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D +LRL  L     +R F GH   V+ ++  S     +SGS D+T+ LW+     C+   
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCK--Y 163
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
            VQ    + +            P+ I S G D     +VK  N     L T   GH   L
Sbjct: 164 TVQDESHSEWVSCVRFSPNSSNPI-IVSCGWD----KLVKVWNLANCKLKTNHIGHTGYL 218
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
           ++                      + SP+G    SG  DG    W +  GK +
Sbjct: 219 NT---------------------VTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 91/238 (38%), Gaps = 57/238 (23%)
Query: 30  LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTV---------IYSSKNGW 80
           L++AS D+++  + +T        + +K+GV +  F  H   V          Y+    W
Sbjct: 33  LLSASRDKTLISWKLTG-------DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D++LRL  +   +  + F GH   V  + +       ISGS D+T+ +W  + +    LL
Sbjct: 86  DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLL 145
Query: 141 -------RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM 193
                  +V+  P    DD  +          I S G D      VK  N  +  +    
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVT---------IISAGND----KXVKAWNLNQFQIEADF 192
Query: 194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK 251
            GH                    S  +TL AS  P+G  + S   DG +  W++ + K
Sbjct: 193 IGH-------------------NSNINTLTAS--PDGTLIASAGKDGEIXLWNLAAKK 229

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 88/233 (37%), Gaps = 45/233 (19%)
Query: 30  LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHP---TTVIYSS------KNGW 80
           +++AS D++I ++ +T        +   YG+       H    + V+ SS         W
Sbjct: 31  ILSASRDKTIIMWKLTR-------DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 83
Query: 81  DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL 140
           D +LRL  L     +R F GH   V+ ++  S     +SGS D+T+ LW+     C+   
Sbjct: 84  DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CK--Y 140
Query: 141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL 200
            VQ    + +            P+ I S G D     +VK  N     L T   GH   L
Sbjct: 141 TVQDESHSEWVSCVRFSPNSSNPI-IVSCGWD----KLVKVWNLANCKLKTNHIGHTGYL 195
Query: 201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV 253
           ++                      + SP+G    SG  DG    W +  GK +
Sbjct: 196 NT---------------------VTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 20/166 (12%)
Query: 98  FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAY------D 151
            +GH   VV + +  +     S SLD  + LWD   E  + +  +   P  A+      D
Sbjct: 76  LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD--LENGKQIKSIDAGPVDAWTLAFSPD 133
Query: 152 DQGLVFGYEKGPLDIFSVGGDISDANV---------VKFSNDGRLMLLTTMEGHIHVLDS 202
            Q L  G   G ++IF V     + ++         + +S DG+ +    ++G I++ D 
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 193
Query: 203 FRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR 248
             G LL T     +   S    +FSP+   +++ S DG +  + V+
Sbjct: 194 ATGKLLHTLEGHAMPIRSL---TFSPDSQLLVTASDDGYIKIYDVQ 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	304
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.96
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.95
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.93
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.92
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.92
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.89
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.88
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.88
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.88
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.88
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.87
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.86
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.84
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.84
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.82
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.82
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.81
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.8
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.79
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.79
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.79
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.78
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.76
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.76
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.75
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.75
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.74
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.73
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.73
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.72
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.72
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.71
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.71
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.71
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.7
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.69
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.68
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.68
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.68
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.66
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.6
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.6
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.58
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.56
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.53
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.53
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.53
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.51
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.5
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.46
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.46
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.45
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.45
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.44
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.44
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.43
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.43
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.42
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.42
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.41
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.41
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.4
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.4
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.39
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.38
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.35
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.34
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.34
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.34
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.34
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.32
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.3
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.3
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.3
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.22
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.16
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.16
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.15
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.15
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.11
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.08
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.06
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.06
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.04
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.04
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.03
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.0
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.0
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.97
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.97
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.95
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.93
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.93
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.91
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.9
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.9
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.88
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.88
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.88
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.86
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.84
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.82
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.82
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.81
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.79
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.78
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.75
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.69
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.61
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.59
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.57
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.55
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.54
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.5
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.48
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.48
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.47
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.44
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.42
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.41
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.4
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.39
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.38
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.35
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.28
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.25
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	98.24
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.23
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.22
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.21
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.19
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.19
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.18
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.18
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.18
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.11
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.1
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.93
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.86
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.83
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.79
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.79
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.75
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.75
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.71
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.7
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.63
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.62
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.61
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.54
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.54
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.54
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.49
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.48
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.46
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.44
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.43
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.41
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.31
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.28
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.28
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.25
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.24
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.14
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.03
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.02
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.97
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.75
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.64
3ott_A	758	Two-component system sensor histidine kinase; beta	96.46
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.07
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.02
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.87
3ott_A	758	Two-component system sensor histidine kinase; beta	95.46
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.55
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.27
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.26
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	91.98
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.81
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	91.52
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	91.21
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.98
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	90.96
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	90.86
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	89.57
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	87.34
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	85.61
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.02
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	84.89
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	84.02
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	83.99
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	83.22
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	83.0
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	82.09

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-48  Score=318.96  Aligned_cols=271  Identities=18%  Similarity=0.281  Sum_probs=244.5

Q ss_pred             eeeeeccee---eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           11 KVSLELSEE---ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        11 ~~~~~~~~~---~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ...+.+|..   .+.++|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++++.   |++|++|
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~---D~~i~iw  177 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA---DMTIKLW  177 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET---TSCCCEE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeC---CCeEEEE
Confidence            345556654   4678899999999999999999999999999999999999999999999999999998   9999999


Q ss_pred             EccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCCe--EEEecCCC
Q 036585           88 SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGL--VFGYEKGP  163 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~  163 (304)
                      |+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++.+...+..+...  .+.+++++.  +.+..++.
T Consensus       178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  257 (410)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence            99999999999999999999999999999999999999999999999888777654433  456677764  44677889


Q ss_pred             eEEEEe---------cCCCCCceEEEEecC--------------------CcEEEEeeCCCeEEEEEcCCCceeEEEEeC
Q 036585          164 LDIFSV---------GGDISDANVVKFSND--------------------GRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  214 (304)
Q Consensus       164 ~~~~~~---------~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  214 (304)
                      +++|++         .+|...|.+++|+|+                    +.+|++|+.|+.|++||+++++.+..+.  
T Consensus       258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~--  335 (410)
T 1vyh_C          258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV--  335 (410)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred             EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE--
Confidence            999975         357889999999996                    6789999999999999999999999888  


Q ss_pred             CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585          215 PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       215 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~  287 (304)
                       +|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|++++|+|++.+|++|+.|  +++|+.
T Consensus       336 -~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          336 -GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             -CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             -CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence             788999999999999999999999999999999999999999999999999999999999999999  999975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.7e-47  Score=297.57  Aligned_cols=273  Identities=18%  Similarity=0.229  Sum_probs=239.0

Q ss_pred             eeeeeccee---eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           11 KVSLELSEE---ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        11 ~~~~~~~~~---~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ...+.+|.+   .+.++|++++|++++.||.|++||+++++.+..+..|..+|.+++|+|+++.|++++.   |+.|++|
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---d~~i~vw   82 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD---DFRIRVF   82 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET---TSEEEEE
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC---CCEEEEE
Confidence            445666654   4788999999999999999999999999999999999999999999999999999998   9999999


Q ss_pred             EccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCccee-eceEEEecc--ceeEecCC-C--eEEEecC
Q 036585           88 SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC-QGLLRVQGR--PAAAYDDQ-G--LVFGYEK  161 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~--~~~~~~~~-~--~~~~~~~  161 (304)
                      |+.+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||++++.. ...+..+..  ..+.++|. +  .+.+..+
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence            9999999999999999999999999999999999999999999987743 333333332  35677763 3  5567788


Q ss_pred             CCeEEEEec----------CCCCCceEEEEec--CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585          162 GPLDIFSVG----------GDISDANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  229 (304)
Q Consensus       162 ~~~~~~~~~----------~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~  229 (304)
                      +.+++|++.          ++...+..+.|+|  ++++|++++.|++|++||+++++.+..+.   +|...|.+++|+|+
T Consensus       163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~---~h~~~v~~~~~~p~  239 (304)
T 2ynn_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPT  239 (304)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSS
T ss_pred             CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC---CCCCCEEEEEECCC
Confidence            999999874          3456788889876  77899999999999999999999999998   78999999999999


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCc--EEEEecCc-eEEeccCC
Q 036585          230 GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL--MFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       230 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~d-~~iw~~~~  289 (304)
                      +++|++|+.||.|++||+++++.+..+..|...+.+++|+|++.  ++++|+.| +.+|.+..
T Consensus       240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (304)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence            99999999999999999999999999999999999999999875  68898888 88887754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.3e-47  Score=300.97  Aligned_cols=268  Identities=19%  Similarity=0.268  Sum_probs=235.8

Q ss_pred             ecceeeE---eecc----cCcEEEEeeCCCeEEEEecCCcce--eeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585           15 ELSEEIL---QSME----VGIYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   85 (304)
Q Consensus        15 ~~~~~~i---~~~~----~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~   85 (304)
                      ++|.+.|   .+++    ++++|++|+.|++|+||++.+++.  ...+.+|...|.+++|++++..+++++.   |+.|+
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~---D~~i~  105 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL---DAHIR  105 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET---TSEEE
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC---CCcEE
Confidence            4566554   4554    367999999999999999987653  4568899999999999999999999998   99999


Q ss_pred             EEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecCCCeE--EEecC
Q 036585           86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLV--FGYEK  161 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~  161 (304)
                      +||+.+++.+..+..|...+.+++|+|++++|++++.|+.|++||+++++....+.....  ..+.+++++..  .+..+
T Consensus       106 lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~d  185 (321)
T 3ow8_A          106 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAID  185 (321)
T ss_dssp             EEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCC
Confidence            999999999999998999999999999999999999999999999999887766655443  35678888744  46677


Q ss_pred             CCeEEEEe---------cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcE
Q 036585          162 GPLDIFSV---------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  232 (304)
Q Consensus       162 ~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  232 (304)
                      +.+.+|++         .+|...|.+++|+|++++|++++.||.|++||+++++....+.   .|...|.+++|+|++++
T Consensus       186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~sp~~~~  262 (321)
T 3ow8_A          186 GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS---GHASWVLNVAFCPDDTH  262 (321)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSE
T ss_pred             CeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc---CCCCceEEEEECCCCCE
Confidence            88888875         3578899999999999999999999999999999999888877   78899999999999999


Q ss_pred             EEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          233 VISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       233 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      |++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|  ++||+..
T Consensus       263 l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          263 FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999  9999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.2e-46  Score=298.51  Aligned_cols=272  Identities=17%  Similarity=0.221  Sum_probs=237.5

Q ss_pred             ceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           10 DKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        10 ~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      ....+++|...   +.+++++++|++++.||+|++||+.+++.+..+..|...|.+++|+|+++++++++.   |+.|++
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~v~i  123 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL---DNICSI  123 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEET---TCEEEE
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeC---CCeEEE
Confidence            34556777654   567899999999999999999999999999999999999999999999999999998   999999


Q ss_pred             EEccCc----eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecCCCe--EEE
Q 036585           87 LSLHDN----KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGL--VFG  158 (304)
Q Consensus        87 wd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~  158 (304)
                      |++.++    +....+.+|.+.|.++.|++++ .+++++.|++|++||+++++....+..+..  ..+.+++++.  +.+
T Consensus       124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             EETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            999875    3456678899999999999877 588999999999999999988777654433  3567788774  446


Q ss_pred             ecCCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585          159 YEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  229 (304)
Q Consensus       159 ~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~  229 (304)
                      ..++.+++|++.         +|...|.+++|+|++++|++++.||.|++||+++++.+..+.. ..+...+++++|+|+
T Consensus       203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~  281 (340)
T 1got_B          203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSVSFSKS  281 (340)
T ss_dssp             ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTT
T ss_pred             eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc-CCcccceEEEEECCC
Confidence            678899999754         5788999999999999999999999999999999887776652 224457999999999


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585          230 GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       230 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      +++|++|+.|+.|++||+.+++.+..+.+|..+|.+++|+|++.+|++|+.|  ++||+
T Consensus       282 g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999999999999999999999999999999999999999999  99995

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2e-46  Score=299.77  Aligned_cols=239  Identities=18%  Similarity=0.222  Sum_probs=204.3

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeee----ecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKT----INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      ..+.|++++ .|++|+.||+|+|||+++++.+..    +.+|...|.+++|+|++++|++++.   |+.|++||+++++.
T Consensus        86 ~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~---d~~i~iwd~~~~~~  161 (344)
T 4gqb_B           86 ADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK---DICIKVWDLAQQVV  161 (344)
T ss_dssp             EEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEE
T ss_pred             EEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC---CCeEEEEECCCCcE
Confidence            457788875 688999999999999998876544    4479999999999999999999998   99999999999999


Q ss_pred             eeecccccccEEEEEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585           95 SRYFKGHHDRVVLLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI  173 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                      +..+.+|.+.|.+++|+|++. +|++++.|++|++||+++++....+...                           .+.
T Consensus       162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~---------------------------~~~  214 (344)
T 4gqb_B          162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS---------------------------APG  214 (344)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------------------------------C
T ss_pred             EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc---------------------------eee
Confidence            999999999999999999874 7899999999999999988766554321                           234


Q ss_pred             CCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC-cEEEEecCCCcEEEEecCCCc
Q 036585          174 SDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISGSGDGSVHAWSVRSGK  251 (304)
Q Consensus       174 ~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~  251 (304)
                      ..+.+++|+|+ +++|++|+.||.|++||+++++.+..+.   .|...|++++|+|++ ++|++|+.|+.|+|||+++++
T Consensus       215 ~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~---~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~  291 (344)
T 4gqb_B          215 YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA---VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE  291 (344)
T ss_dssp             CCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE---CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred             ccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc---CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc
Confidence            56889999995 5688899999999999999999999988   789999999999998 579999999999999998887


Q ss_pred             eeeeeeccCCCCceEEeCCCCc-EEEEecCc--eEEeccCCccc
Q 036585          252 EVASWMSFDTEPPVIKWAPGSL-MFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       252 ~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d--~~iw~~~~~~~  292 (304)
                      ++ .+.+|.+.|++++|+|+++ +|++++.|  +++|+++.+.+
T Consensus       292 ~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          292 LF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             EE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            54 5678999999999999986 57789988  99999977654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.8e-45  Score=294.26  Aligned_cols=273  Identities=15%  Similarity=0.215  Sum_probs=236.8

Q ss_pred             ceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           10 DKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        10 ~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      ....+++|...   +.++|++++|++|+.||+|++||..+++....+..|...|.+++|+|++..+++++.   |+.+++
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~---d~~i~v  132 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL---DNKCSV  132 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEEST---TSEEEE
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeC---CCCEEE
Confidence            35567777654   567889999999999999999999999999999999999999999999999999998   999999


Q ss_pred             EEccCc------eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecC--C--C
Q 036585           87 LSLHDN------KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDD--Q--G  154 (304)
Q Consensus        87 wd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~--~--~  154 (304)
                      |++...      .....+..|...|.++.|+|++..|++++.|++|++||+++++....+..+...  .+.+.+  +  .
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~  212 (354)
T 2pbi_B          133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT  212 (354)
T ss_dssp             EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred             EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence            998643      234556789999999999999999999999999999999999888877755443  344444  3  3


Q ss_pred             eEEEecCCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEE
Q 036585          155 LVFGYEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  225 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~  225 (304)
                      .+.+..++.+.+|++.         .|...|++++|+|++.+|++++.|++|++||+++++....+... .+...+.+++
T Consensus       213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~-~~~~~~~~~~  291 (354)
T 2pbi_B          213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE-SIIFGASSVD  291 (354)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-TCCSCEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-CcccceeEEE
Confidence            5557778999999753         57889999999999999999999999999999998777666522 2345788999


Q ss_pred             EcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585          226 FSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       226 ~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      |+|++++|++|+.|+.|++||+.+++.+..+.+|..+|++++|+|++++|++++.|  ++||+
T Consensus       292 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999999999999999999999999999999999999999  88885

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.7e-46  Score=301.66  Aligned_cols=278  Identities=19%  Similarity=0.264  Sum_probs=234.9

Q ss_pred             ceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           10 DKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        10 ~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      ....+++|...   +.++|++++|++|+.|++|++||+.+++....+..|...|.+++|+|++++|++++.   |+.+++
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~---d~~v~i  134 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGL---DSACSI  134 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCS---SSCCEE
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeC---CCcEEE
Confidence            34556777654   678899999999999999999999999999999999999999999999999999998   999999


Q ss_pred             EEccCce-------eeeecccccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEE-----ec--cceeEec
Q 036585           87 LSLHDNK-------YSRYFKGHHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRV-----QG--RPAAAYD  151 (304)
Q Consensus        87 wd~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~--~~~~~~~  151 (304)
                      |++.+..       ....+.+|.+.|.++.|+|+ +..|++++.|++|++||+++++....+..     +.  ...+.+.
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            9997532       34567889999999999996 45799999999999999999887765521     11  1233443


Q ss_pred             C-C--CeEEEecCCCeEEEEec----------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC--
Q 036585          152 D-Q--GLVFGYEKGPLDIFSVG----------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV--  216 (304)
Q Consensus       152 ~-~--~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--  216 (304)
                      + +  ..+.+..++.+++|++.          +|...|.+++|+|++++|++++.||+|++||+++++.+..+.....  
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence            3 3  35567788999999864          4788999999999999999999999999999999998887764321  


Q ss_pred             --CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee----eccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          217 --SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW----MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       217 --~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                        +...+++++|+|+|++|++|+.||.|++||+.+++.+..+    .+|.+.|++++|+|++++|++|+.|  ++||++.
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence              2235899999999999999999999999999998887766    6799999999999999999999999  9999986


Q ss_pred             Cc
Q 036585          289 LS  290 (304)
Q Consensus       289 ~~  290 (304)
                      ..
T Consensus       375 ~~  376 (380)
T 3iz6_a          375 GH  376 (380)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.8e-44  Score=285.90  Aligned_cols=277  Identities=22%  Similarity=0.408  Sum_probs=237.6

Q ss_pred             cceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585            9 EDKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   85 (304)
Q Consensus         9 ~~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~   85 (304)
                      .....+.+|...   +.++|++++|++++.||.|++|+..+++....+.+|...|.+++|+|++++|++++.   |+.|+
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~   90 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD---DKTLK   90 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC---CCEEE
Confidence            345566666554   678899999999999999999999999999999999999999999999999999998   99999


Q ss_pred             EEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCC--eEEEecC
Q 036585           86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQG--LVFGYEK  161 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~  161 (304)
                      +||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+..+...  .+.+++++  .+.+..+
T Consensus        91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A           91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            9999999999999999999999999999999999999999999999998877766544333  46677776  4456778


Q ss_pred             CCeEEEEecC----------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc
Q 036585          162 GPLDIFSVGG----------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  231 (304)
Q Consensus       162 ~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  231 (304)
                      +.+.+|++..          +...+..++|+|++++|++++.||.|++||+++++....+..+......+......+++.
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK  250 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred             CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence            8899998653          446788999999999999999999999999999998888773322222233333446889


Q ss_pred             EEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEec--Cc--eEEeccC
Q 036585          232 FVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGS--SE--LSFWIPD  288 (304)
Q Consensus       232 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~d--~~iw~~~  288 (304)
                      +|++|+.||.|++||+++++.+..+.+|...|.+++|+|+++++++++  .|  +++|..+
T Consensus       251 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            999999999999999999999999999999999999999999999986  35  9999865

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.1e-44  Score=287.76  Aligned_cols=274  Identities=16%  Similarity=0.256  Sum_probs=227.2

Q ss_pred             cccceeeeecceeeE---eeccc-CcEEEEeeCCCeEEEEecCC-----cceeeeecccccceeEEEEccCCCeEEEEec
Q 036585            7 EREDKVSLELSEEIL---QSMEV-GIYLVTASDDESIRLYDVTA-----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSK   77 (304)
Q Consensus         7 ~~~~~~~~~~~~~~i---~~~~~-~~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   77 (304)
                      .-.....+++|...|   .++++ +++|++|+.|++|++|++.+     +.++..+.+|...|.+++|+|++++|++++.
T Consensus         6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A            6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            334456677887664   45665 48999999999999999864     3456788999999999999999999999998


Q ss_pred             CCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecCC--
Q 036585           78 NGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQ--  153 (304)
Q Consensus        78 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~--  153 (304)
                         |++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||++... ...+..+..  ..+.+.+.  
T Consensus        86 ---D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~-~~~~~~h~~~v~~~~~~~~~~  161 (319)
T 3frx_A           86 ---DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEK  161 (319)
T ss_dssp             ---TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE-EEEECCCSSCEEEEEECCC--
T ss_pred             ---CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEeccCCcEEEEEEccCCC
Confidence               9999999999999999999999999999999999999999999999999997543 333322221  12344442  


Q ss_pred             ------CeEEEecCCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCC
Q 036585          154 ------GLVFGYEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  218 (304)
Q Consensus       154 ------~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  218 (304)
                            ..+.+..++.+++|++.         +|...|.+++|+|++++|++++.||.|++||+++++.+..+.    ..
T Consensus       162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~  237 (319)
T 3frx_A          162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQ  237 (319)
T ss_dssp             ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE----CC
T ss_pred             CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec----CC
Confidence                  24557778888888754         588999999999999999999999999999999999988887    45


Q ss_pred             CcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee--------ccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          219 NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM--------SFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      ..+.+++|+|++.+|++++.+ .+++|++.....+..+.        .|...+.+++|+|+|++|++|+.|  ++||++.
T Consensus       238 ~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          238 DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence            689999999999999988755 59999998776655543        356678999999999999999999  9999875


Q ss_pred             C
Q 036585          289 L  289 (304)
Q Consensus       289 ~  289 (304)
                      .
T Consensus       317 t  317 (319)
T 3frx_A          317 T  317 (319)
T ss_dssp             E
T ss_pred             e
Confidence            4

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.3e-45  Score=294.90  Aligned_cols=265  Identities=16%  Similarity=0.132  Sum_probs=213.2

Q ss_pred             eeeEeecccCcEEEEeeC------CCeEEEEecCCccee----eeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           18 EEILQSMEVGIYLVTASD------DESIRLYDVTAATCL----KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~------d~~i~vw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ...+.|+|||++|++++.      |+.|++|+..++...    .....|...|.+++|+|++.+ ++++.   |+.|++|
T Consensus        45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~---dg~v~lW  120 (357)
T 4g56_B           45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASD---SGAVELW  120 (357)
T ss_dssp             EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEET---TSCEEEC
T ss_pred             EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEEC---CCEEEEe
Confidence            456889999999999997      788999998776543    334568889999999999865 45666   9999999


Q ss_pred             EccCceeeee----cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCC---eEEE
Q 036585           88 SLHDNKYSRY----FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQG---LVFG  158 (304)
Q Consensus        88 d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~  158 (304)
                      |+.+++....    ..+|...|.+++|+|++++|++++.|+.|++||+++++....+..+...  .+.+.+++   .+.+
T Consensus       121 d~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~  200 (357)
T 4g56_B          121 EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSC  200 (357)
T ss_dssp             --------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEE
T ss_pred             eccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeee
Confidence            9998765433    3478999999999999999999999999999999999888777654433  45666554   4557


Q ss_pred             ecCCCeEEEEecC-----------CCCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEE
Q 036585          159 YEKGPLDIFSVGG-----------DISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  226 (304)
Q Consensus       159 ~~~~~~~~~~~~~-----------~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~  226 (304)
                      ..++.+++|++..           +...+.+++|+|+ +.+|++|+.|+.|++||+++++....+.   .+...|++++|
T Consensus       201 ~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~l~~  277 (357)
T 4g56_B          201 GEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA---VHSQNITGLAY  277 (357)
T ss_dssp             ETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC---CCSSCEEEEEE
T ss_pred             ccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe---ccceeEEEEEE
Confidence            7789999997643           4456889999997 4688899999999999999999988887   68899999999


Q ss_pred             cCCC-cEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCC-CCcEEEEecCc--eEEeccCCc
Q 036585          227 SPEG-MFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAP-GSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       227 s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      +|++ ++|++|+.|+.|+|||+++++++..+ +|...|++++|+| ++.+|++++.|  +++|++..+
T Consensus       278 sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          278 SYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             CSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             cCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            9987 57999999999999999998877655 7999999999999 79999999999  999998543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.5e-44  Score=292.80  Aligned_cols=263  Identities=21%  Similarity=0.367  Sum_probs=225.4

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeeccccc------------------ceeEEEEccCCCeEEEEecCCCC
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKY------------------GVDLVCFTSHPTTVIYSSKNGWD   81 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~~~~d   81 (304)
                      .+.++|+|++||+++ ++.+++|++.+++.+..+..|..                  .|.+++|+|++++|++++.   |
T Consensus        69 ~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~---d  144 (393)
T 1erj_A           69 CVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE---D  144 (393)
T ss_dssp             EEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET---T
T ss_pred             EEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC---C
Confidence            578899999999987 67899999999998887766532                  3899999999999999998   9


Q ss_pred             CceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec-cceeEecC-CC--eEE
Q 036585           82 ESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDD-QG--LVF  157 (304)
Q Consensus        82 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~-~~--~~~  157 (304)
                      +.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++....+.... ...+.+.+ ++  .+.
T Consensus       145 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  224 (393)
T 1erj_A          145 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA  224 (393)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEE
T ss_pred             CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999988776665433 23456666 44  445


Q ss_pred             EecCCCeEEEEec----------------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCc------------eeE
Q 036585          158 GYEKGPLDIFSVG----------------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT------------LLS  209 (304)
Q Consensus       158 ~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------------~~~  209 (304)
                      +..++.+++|++.                +|...|.+++|+|++++|++++.||.|++||+++..            ...
T Consensus       225 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~  304 (393)
T 1erj_A          225 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV  304 (393)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEE
T ss_pred             EcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceE
Confidence            6778889999753                577889999999999999999999999999997643            333


Q ss_pred             EEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCC------CCcEEEEecCc--
Q 036585          210 TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAP------GSLMFVTGSSE--  281 (304)
Q Consensus       210 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~s~~~d--  281 (304)
                      .+.   +|...|.+++|+|++.+|++|+.|+.|++||+++++++..+.+|...|.+++|+|      ++.+|++|+.|  
T Consensus       305 ~~~---~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~  381 (393)
T 1erj_A          305 TYI---GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK  381 (393)
T ss_dssp             EEE---CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             EEe---cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence            444   6888999999999999999999999999999999999999999999999999886      68999999999  


Q ss_pred             eEEeccCC
Q 036585          282 LSFWIPDL  289 (304)
Q Consensus       282 ~~iw~~~~  289 (304)
                      ++||++..
T Consensus       382 i~iW~~~~  389 (393)
T 1erj_A          382 ARIWKYKK  389 (393)
T ss_dssp             EEEEEEEE
T ss_pred             EEECcccc
Confidence            99998753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.5e-44  Score=288.58  Aligned_cols=272  Identities=15%  Similarity=0.217  Sum_probs=218.7

Q ss_pred             ceeeeecceeeEe---e-----cc-cCcEEEEeeCCCeEEEEecCCc-------ceeeeecccccceeEEEEccCCCeEE
Q 036585           10 DKVSLELSEEILQ---S-----ME-VGIYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHPTTVI   73 (304)
Q Consensus        10 ~~~~~~~~~~~i~---~-----~~-~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~   73 (304)
                      ....+++|...|.   +     .+ ++++|++|+.|++|++||+.+.       .+...+.+|...|.+++|+|++.+++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            4556778876654   3     34 7899999999999999998743       45677889999999999999999999


Q ss_pred             EEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEE--E--eccceeE
Q 036585           74 YSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR--V--QGRPAAA  149 (304)
Q Consensus        74 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~--~~~~~~~  149 (304)
                      +++.   |++|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+..........  .  .....+.
T Consensus        93 s~s~---D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R           93 SSSW---DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             EEET---TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE
T ss_pred             EEcC---CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee
Confidence            9998   9999999999999999999999999999999999999999999999999997432221110  0  1122344


Q ss_pred             ecCCC------------eEEEecCCCeEEEE--------ecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC-Ccee
Q 036585          150 YDDQG------------LVFGYEKGPLDIFS--------VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR-GTLL  208 (304)
Q Consensus       150 ~~~~~------------~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~  208 (304)
                      +++++            .+.+..++.+++|+        +.+|...|.+++|+|+|++|++++.||.|++||+.+ ....
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~  249 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ  249 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS
T ss_pred             eccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence            55543            34456677777775        456889999999999999999999999999999944 4444


Q ss_pred             EEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee--eee-----------ccCCCCceEEeCCCCcEE
Q 036585          209 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA--SWM-----------SFDTEPPVIKWAPGSLMF  275 (304)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~-----------~~~~~i~~~~~~~~~~~l  275 (304)
                      ..+.    +...|.+++|+|++.+++++ .|+.|++||+.+++...  .+.           +|...|.+++|+|++++|
T Consensus       250 ~~~~----~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  324 (343)
T 2xzm_R          250 REFD----AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL  324 (343)
T ss_dssp             EEEE----CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred             eeec----CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence            4443    45679999999999888765 57789999998766533  332           678889999999999999


Q ss_pred             EEecCc--eEEeccCC
Q 036585          276 VTGSSE--LSFWIPDL  289 (304)
Q Consensus       276 ~s~~~d--~~iw~~~~  289 (304)
                      ++|+.|  +++|+++.
T Consensus       325 ~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          325 FAGFTDGVIRTFSFET  340 (343)
T ss_dssp             EEEETTSEEEEEEEEE
T ss_pred             EEecCCceEEEEEEEc
Confidence            999999  99998753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.4e-44  Score=286.77  Aligned_cols=277  Identities=12%  Similarity=0.225  Sum_probs=222.6

Q ss_pred             ceeeeeccee----eEeecccCcEEEEeeCCCeEEEEecCCcceee---eecccccceeEEEEccCCCeEEEEecCCCCC
Q 036585           10 DKVSLELSEE----ILQSMEVGIYLVTASDDESIRLYDVTAATCLK---TINSKKYGVDLVCFTSHPTTVIYSSKNGWDE   82 (304)
Q Consensus        10 ~~~~~~~~~~----~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~   82 (304)
                      ....+++|..    .+.++|+|++||+|+.|++|+|||+.+++...   ...+|...|.+++|+|++++|++++.   |+
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~---D~   83 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF---DA   83 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET---TS
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC---CC
Confidence            3455666654    58899999999999999999999998776432   23689999999999999999999998   99


Q ss_pred             ceEEEEccCc--eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec---eEEEec--cceeEecCCC-
Q 036585           83 SLRLLSLHDN--KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG---LLRVQG--RPAAAYDDQG-  154 (304)
Q Consensus        83 ~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~--~~~~~~~~~~-  154 (304)
                      .+++|++.++  +.+..+.+|...|.+++|+|++++|++++.|+.|++||++++....   .+..+.  ...+.++|++ 
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            9999999876  4577888999999999999999999999999999999998764332   222222  2346677776 


Q ss_pred             -eEEEecCCCeEEEEe-----------cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCc---------------e
Q 036585          155 -LVFGYEKGPLDIFSV-----------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT---------------L  207 (304)
Q Consensus       155 -~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---------------~  207 (304)
                       .+.+..++.+++|+.           .+|...|.+++|+|++++|++++.|++|++||.....               .
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~  243 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC  243 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence             445667788888754           4688899999999999999999999999999964321               1


Q ss_pred             eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce---------eeeeeccCCCCceEEeCCCC-cEEEE
Q 036585          208 LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE---------VASWMSFDTEPPVIKWAPGS-LMFVT  277 (304)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~---------~~~~~~~~~~i~~~~~~~~~-~~l~s  277 (304)
                      +..+.  ..|...|.+++|+|++..|++++.|+.|++|+......         .....+|...|++++|+|++ .+|++
T Consensus       244 ~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS  321 (345)
T 3fm0_A          244 ICTLS--GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS  321 (345)
T ss_dssp             EEEEC--SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEE
T ss_pred             eEEec--CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEE
Confidence            22222  23778999999999999999999999999999875431         11235789999999999998 59999


Q ss_pred             ecCc--eEEeccCCcc
Q 036585          278 GSSE--LSFWIPDLSK  291 (304)
Q Consensus       278 ~~~d--~~iw~~~~~~  291 (304)
                      ++.|  +++|+...++
T Consensus       322 ~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          322 CSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             EETTSCEEEEEECC--
T ss_pred             cCCCCcEEEEEecCCC
Confidence            9999  9999986644

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.8e-45  Score=292.43  Aligned_cols=253  Identities=19%  Similarity=0.155  Sum_probs=207.9

Q ss_pred             ecceeeEeecccCcEEEEeeCCCeEEEEecCC-----------cceeeeecccccceeEEEEccCCCeEEEEecCCCCCc
Q 036585           15 ELSEEILQSMEVGIYLVTASDDESIRLYDVTA-----------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   83 (304)
Q Consensus        15 ~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~   83 (304)
                      +.+-..+.+++||++|++++ |+++|+||...           .........+..+|.+++|+|++ .+++++.   ||.
T Consensus        30 ~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~---dg~  104 (344)
T 4gqb_B           30 ERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASD---SGA  104 (344)
T ss_dssp             CSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEET---TSE
T ss_pred             cCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEEC---CCE
Confidence            34556789999999999888 66788887321           11112222356689999999985 6778887   999


Q ss_pred             eEEEEccCceeeee----cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEe
Q 036585           84 LRLLSLHDNKYSRY----FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGY  159 (304)
Q Consensus        84 i~vwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (304)
                      |+|||+.+++.+..    +.+|.+.|.+++|+|++++|++++.|++|++||+++++.+..+.                  
T Consensus       105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~------------------  166 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR------------------  166 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC------------------
T ss_pred             EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc------------------
Confidence            99999998875543    34799999999999999999999999999999999887765543                  


Q ss_pred             cCCCeEEEEecCCCCCceEEEEecCCc-EEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEec
Q 036585          160 EKGPLDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGS  237 (304)
Q Consensus       160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~  237 (304)
                                 +|...|.+++|+|++. +|++++.|++|++||+++++....+... .+...+++++|+| ++++|++|+
T Consensus       167 -----------~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          167 -----------AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             -----------CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEE
T ss_pred             -----------CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-eeeccceeeeecCCCCcceEEec
Confidence                       6888999999999985 7889999999999999999888776432 3556789999999 467889999


Q ss_pred             CCCcEEEEecCCCceeeeeeccCCCCceEEeCCCC-cEEEEecCc--eEEeccCCccccccccCCCCC
Q 036585          238 GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS-LMFVTGSSE--LSFWIPDLSKLGAYVGRNRGC  302 (304)
Q Consensus       238 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d--~~iw~~~~~~~~~~~~~~~g~  302 (304)
                      .||.|++||+++++++..+.+|...|++++|+|++ ++|++++.|  ++||+.+..++..+.+|...+
T Consensus       235 ~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V  302 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFV  302 (344)
T ss_dssp             TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCE
T ss_pred             cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCE
Confidence            99999999999999999999999999999999998 579999998  999999988888888887654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.8e-43  Score=303.97  Aligned_cols=280  Identities=16%  Similarity=0.246  Sum_probs=227.1

Q ss_pred             eeccee---eEeecccCc-EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc
Q 036585           14 LELSEE---ILQSMEVGI-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL   89 (304)
Q Consensus        14 ~~~~~~---~i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~   89 (304)
                      +.+|..   .+.++|++. +|++++.|++|++||..+++.+..+.+|...|.+++|+|++++|++++.   |++|++||+
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~---D~~i~lwd~  219 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG---DGTIVLYNG  219 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEET
T ss_pred             ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC---CCcEEEEEC
Confidence            445543   467888886 6999999999999999999999999999999999999999999999998   999999999


Q ss_pred             cCceeeeecc-------cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEe-------------------
Q 036585           90 HDNKYSRYFK-------GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ-------------------  143 (304)
Q Consensus        90 ~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------  143 (304)
                      .+++....+.       +|.+.|.+++|+|++++|++++.|++|++||+++++....+...                   
T Consensus       220 ~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  299 (611)
T 1nr0_A          220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS  299 (611)
T ss_dssp             TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred             CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEE
Confidence            9998887774       79999999999999999999999999999999987665443210                   


Q ss_pred             --------------------------ccceeEecCCCeE--EEecCCCeEEEEecC----------C-------------
Q 036585          144 --------------------------GRPAAAYDDQGLV--FGYEKGPLDIFSVGG----------D-------------  172 (304)
Q Consensus       144 --------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----------~-------------  172 (304)
                                                ....+++++++..  .+..++.+++|++..          |             
T Consensus       300 ~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~  379 (611)
T 1nr0_A          300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG  379 (611)
T ss_dssp             EETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred             EeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC
Confidence                                      1123556676633  355566777776431          1             


Q ss_pred             --------------------------------------------------------------------CCCceEEEEecC
Q 036585          173 --------------------------------------------------------------------ISDANVVKFSND  184 (304)
Q Consensus       173 --------------------------------------------------------------------~~~v~~~~~~~~  184 (304)
                                                                                          ...+.+++|+|+
T Consensus       380 ~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spd  459 (611)
T 1nr0_A          380 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND  459 (611)
T ss_dssp             CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT
T ss_pred             cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCC
Confidence                                                                                123567899999


Q ss_pred             CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC-Cceeee--eeccCC
Q 036585          185 GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS-GKEVAS--WMSFDT  261 (304)
Q Consensus       185 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~-~~~~~~--~~~~~~  261 (304)
                      |++|++|+.|++|++||+.+++......  ..|...|++++|+|+|++|++++.|+.|++||+.+ ++.+..  +..|..
T Consensus       460 g~~lasgs~D~~v~lwd~~~~~~~~~~~--~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~  537 (611)
T 1nr0_A          460 KQFVAVGGQDSKVHVYKLSGASVSEVKT--IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA  537 (611)
T ss_dssp             SCEEEEEETTSEEEEEEEETTEEEEEEE--EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred             CCEEEEeCCCCeEEEEEccCCceeeeec--cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccc
Confidence            9999999999999999998765432111  15889999999999999999999999999999987 555443  345999


Q ss_pred             CCceEEeCCCCcEEEEecCc--eEEeccCCcc--c-cccccC
Q 036585          262 EPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK--L-GAYVGR  298 (304)
Q Consensus       262 ~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~--~-~~~~~~  298 (304)
                      .|++++|+||+++|++++.|  +++|+++...  + ..+.+|
T Consensus       538 ~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h  579 (611)
T 1nr0_A          538 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH  579 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred             ceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccC
Confidence            99999999999999999999  9999997533  2 445566

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.9e-43  Score=275.05  Aligned_cols=244  Identities=14%  Similarity=0.168  Sum_probs=203.2

Q ss_pred             eeccee---eEeecccCcEEEEeeCCCeEEEEecCC--cceeeeecccccceeEEEEccC--CCeEEEEecCCCCCceEE
Q 036585           14 LELSEE---ILQSMEVGIYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        14 ~~~~~~---~i~~~~~~~~l~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~d~~i~v   86 (304)
                      +.+|..   .+.++++|++||+|+.|++|+|||+.+  .+.+.++.+|..+|.+++|+++  ++.|++++.   |++|++
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~---D~~v~i   81 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---DGKVMI   81 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET---TTEEEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC---CCEEEE
Confidence            444554   367889999999999999999999974  4678899999999999999864  889999998   999999


Q ss_pred             EEccCce--eeeecccccccEEEEEEcCC--CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585           87 LSLHDNK--YSRYFKGHHDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG  162 (304)
Q Consensus        87 wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (304)
                      ||+++++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||+++.......                      
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~----------------------  139 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI----------------------  139 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE----------------------
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee----------------------
Confidence            9999874  55667789999999999997  889999999999999999875322111                      


Q ss_pred             CeEEEEecCCCCCceEEEEecC-------------CcEEEEeeCCCeEEEEEcCCCc----eeEEEEeCCCCCCcceEEE
Q 036585          163 PLDIFSVGGDISDANVVKFSND-------------GRLMLLTTMEGHIHVLDSFRGT----LLSTYNVKPVSRNSTLEAS  225 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~~~~i~~~~  225 (304)
                           .+.+|...|.+++|+|+             +++|++|+.|++|++||+++++    ....+.   +|...|.+++
T Consensus       140 -----~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~---~H~~~V~~v~  211 (297)
T 2pm7_B          140 -----IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSDWVRDVA  211 (297)
T ss_dssp             -----EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC---CCSSCEEEEE
T ss_pred             -----eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec---CCCCceEEEE
Confidence                 11257788999999986             5789999999999999998766    334444   6899999999


Q ss_pred             EcCCC---cEEEEecCCCcEEEEecCCCce---eeee--eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          226 FSPEG---MFVISGSGDGSVHAWSVRSGKE---VASW--MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       226 ~s~~~---~~l~~~~~dg~i~v~d~~~~~~---~~~~--~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      |+|++   ++|++++.|+.|++||+++...   ...+  ..|...|.+++|+|++++|++++.|  ++||+.+.+
T Consensus       212 ~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          212 WSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             ECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence            99984   8999999999999999977431   1222  4678899999999999999999998  999987643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.4e-43  Score=299.85  Aligned_cols=272  Identities=15%  Similarity=0.181  Sum_probs=228.2

Q ss_pred             ecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce-
Q 036585           15 ELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-   93 (304)
Q Consensus        15 ~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~-   93 (304)
                      ++....+.++|+|++|++++ ++.|++|++.+++....+.+|...|.+++|+|++++|++++.   |++|+|||+.+++ 
T Consensus        18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~---d~~v~lWd~~~~~~   93 (611)
T 1nr0_A           18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV---HGNVRIWDTTQTTH   93 (611)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEESSSTTC
T ss_pred             cCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeC---CCCEEEeECCCCcc
Confidence            45566788999999999998 569999999999999999999999999999999999999998   9999999997543 


Q ss_pred             -eeeecccccccEEEEEEcCCCCEEEEcccC----CeEEEEeCCcceeeceEEEec--cceeEecCCC---eEEEecCCC
Q 036585           94 -YSRYFKGHHDRVVLLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG---LVFGYEKGP  163 (304)
Q Consensus        94 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~  163 (304)
                       ....+.+|.++|.+++|+|++++|++++.+    +.|++||..  +....+..+.  ...+.++|++   .+.+..++.
T Consensus        94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~--~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~  171 (611)
T 1nr0_A           94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT  171 (611)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred             eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC--CCcceecCCCCCceEEEECCCCCeEEEEEeCCCe
Confidence             345677899999999999999999988765    478888853  3333333332  2356778775   455777888


Q ss_pred             eEEEEe---------cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC----CCCCCcceEEEEcCCC
Q 036585          164 LDIFSV---------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----PVSRNSTLEASFSPEG  230 (304)
Q Consensus       164 ~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----~~~~~~i~~~~~s~~~  230 (304)
                      +++|+.         .+|...|.+++|+|+|++|++++.|++|++||+.+++....+...    ..|...|.+++|+|++
T Consensus       172 v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg  251 (611)
T 1nr0_A          172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG  251 (611)
T ss_dssp             EEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             EEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC
Confidence            888864         468899999999999999999999999999999999887766311    1488899999999999


Q ss_pred             cEEEEecCCCcEEEEecCCCceee-------------------------------------------eeeccCCCCceEE
Q 036585          231 MFVISGSGDGSVHAWSVRSGKEVA-------------------------------------------SWMSFDTEPPVIK  267 (304)
Q Consensus       231 ~~l~~~~~dg~i~v~d~~~~~~~~-------------------------------------------~~~~~~~~i~~~~  267 (304)
                      ++|++++.|++|++||+++++++.                                           .+.+|...|++++
T Consensus       252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~  331 (611)
T 1nr0_A          252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS  331 (611)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE
Confidence            999999999999999998876543                                           2347889999999


Q ss_pred             eCCCCcEEEEecCc--eEEeccCCccc
Q 036585          268 WAPGSLMFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       268 ~~~~~~~l~s~~~d--~~iw~~~~~~~  292 (304)
                      |+|++++|++++.|  +++|++.....
T Consensus       332 ~spdg~~l~s~s~D~~v~~Wd~~~~~~  358 (611)
T 1nr0_A          332 SSADGKTLFSADAEGHINSWDISTGIS  358 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             EeCCCCEEEEEeCCCcEEEEECCCCce
Confidence            99999999999999  99999876543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-41  Score=274.61  Aligned_cols=274  Identities=14%  Similarity=0.194  Sum_probs=238.3

Q ss_pred             ceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           10 DKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        10 ~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      ....+.+|...   +.+++++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.   |+.|++
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---dg~i~i  100 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA---DYSIKL  100 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET---TTEEEE
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeC---CCeEEE
Confidence            34556777654   667889999999999999999999999999999999999999999999999999998   999999


Q ss_pred             EEccCceeeeecccccccEEEEEEcCCCCEEEEcccC-----CeEEEEeCCcceeeceEEEe---------------ccc
Q 036585           87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLLRVQ---------------GRP  146 (304)
Q Consensus        87 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~---------------~~~  146 (304)
                      ||+.+++.+..+. +...+.+++|+|+++++++++.+     +.|++||++.......+...               ...
T Consensus       101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            9999999888887 88899999999999999999998     99999999876543332211               222


Q ss_pred             eeEecCCC--eEEEecCCCeEEEEec----------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC
Q 036585          147 AAAYDDQG--LVFGYEKGPLDIFSVG----------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK  214 (304)
Q Consensus       147 ~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  214 (304)
                      .+.+++++  .+.+..++.+.+|++.          .|...|.+++|+|++++|++++.||.|++||+++++....+.  
T Consensus       180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--  257 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--  257 (369)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--
Confidence            45566665  3445566777777664          477899999999999999999999999999999999988887  


Q ss_pred             CCCCCcceEEEEcCCCcEEEEecCCC--------------cEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecC
Q 036585          215 PVSRNSTLEASFSPEGMFVISGSGDG--------------SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       215 ~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  280 (304)
                        +...+..++|+|+++++++++.++              .+++||+.+++.+..+.+|...|++++|+|++++|++++.
T Consensus       258 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  335 (369)
T 3zwl_B          258 --TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE  335 (369)
T ss_dssp             --CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             --CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence              678899999999999999999888              8999999999999999999999999999999999999999


Q ss_pred             c--eEEeccCCcc
Q 036585          281 E--LSFWIPDLSK  291 (304)
Q Consensus       281 d--~~iw~~~~~~  291 (304)
                      |  +++|+++...
T Consensus       336 dg~v~iw~~~~~~  348 (369)
T 3zwl_B          336 DGFIRLHHFEKSY  348 (369)
T ss_dssp             TSEEEEEEECHHH
T ss_pred             CCeEEEEECcccc
Confidence            8  9999987654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-41  Score=269.91  Aligned_cols=276  Identities=17%  Similarity=0.278  Sum_probs=206.9

Q ss_pred             ceeeeecceeeEeecc-cCcEEEEeeCCCeEEEEecCCc--ceeeee-cc-cccceeEEEEccCCCeEEEEecCCCCCce
Q 036585           10 DKVSLELSEEILQSME-VGIYLVTASDDESIRLYDVTAA--TCLKTI-NS-KKYGVDLVCFTSHPTTVIYSSKNGWDESL   84 (304)
Q Consensus        10 ~~~~~~~~~~~i~~~~-~~~~l~~~~~d~~i~vw~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i   84 (304)
                      ....+++|...|.... .+++|++++.|++|++||+.++  +.+..+ .+ |...|.+++|+|++++|++++.   |+.|
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~---D~~v   82 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF---DSTV   82 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET---TSCE
T ss_pred             cceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC---CCcE
Confidence            4556777776554332 2349999999999999999875  445555 44 9999999999999999999998   9999


Q ss_pred             EEEEccC-------ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcc----eeeceEEEec--cceeEec
Q 036585           85 RLLSLHD-------NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAE----KCQGLLRVQG--RPAAAYD  151 (304)
Q Consensus        85 ~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~--~~~~~~~  151 (304)
                      ++||+..       .+.+..+.+|...|.+++|+|++++|++++.|++|++||++..    +....+..+.  ...+.++
T Consensus        83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~  162 (330)
T 2hes_X           83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH  162 (330)
T ss_dssp             EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred             EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence            9999853       3456778899999999999999999999999999999999533    2223333222  2356777


Q ss_pred             CCCe--EEEecCCCeEEEEe-----------cCCCCCceEEEEecC--CcEEEEeeCCCeEEEEEcCCCce------eEE
Q 036585          152 DQGL--VFGYEKGPLDIFSV-----------GGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRGTL------LST  210 (304)
Q Consensus       152 ~~~~--~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~------~~~  210 (304)
                      |++.  +.+..++.+++|+.           .+|...|.+++|+|+  +..|++++.|++|++||++++..      ...
T Consensus       163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~  242 (330)
T 2hes_X          163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE  242 (330)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence            7764  44667888888864           358889999999998  67899999999999999875421      111


Q ss_pred             EEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc--eeee-eeccCC-CCceEEeCC--CCcEEEEecCc--e
Q 036585          211 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK--EVAS-WMSFDT-EPPVIKWAP--GSLMFVTGSSE--L  282 (304)
Q Consensus       211 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~--~~~~-~~~~~~-~i~~~~~~~--~~~~l~s~~~d--~  282 (304)
                      ......|...|.+++|++++ +|++++.||.|++||..+++  .... +.+|.. .|++++|+|  ++++|++++.|  +
T Consensus       243 ~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v  321 (330)
T 2hes_X          243 AILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIV  321 (330)
T ss_dssp             EECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEE
T ss_pred             eecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcE
Confidence            11122378899999999765 89999999999999998764  2322 357876 899999999  78999999999  9


Q ss_pred             EEeccCC
Q 036585          283 SFWIPDL  289 (304)
Q Consensus       283 ~iw~~~~  289 (304)
                      +||+++.
T Consensus       322 ~~W~~~~  328 (330)
T 2hes_X          322 NFWSLEK  328 (330)
T ss_dssp             EEEEC--
T ss_pred             EEEEecc
Confidence            9998753

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.3e-41  Score=265.96  Aligned_cols=246  Identities=14%  Similarity=0.152  Sum_probs=215.5

Q ss_pred             ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEE
Q 036585           48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL  127 (304)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  127 (304)
                      +..+++.+|...|.+++|+|++++|++++.   |+.|++||+.+++.+..+..|..+|.+++|+|++++|++++.|+.|+
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~---dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~   80 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLY---SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEET---TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcC---CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence            456788999999999999999999999998   99999999999999999999999999999999999999999999999


Q ss_pred             EEeCCcceeeceEEEeccc--eeEecCCC--eEEEecCCCeEEEEec----------CCCCCceEEEEec-CCcEEEEee
Q 036585          128 LWDQRAEKCQGLLRVQGRP--AAAYDDQG--LVFGYEKGPLDIFSVG----------GDISDANVVKFSN-DGRLMLLTT  192 (304)
Q Consensus       128 iwd~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~-~~~~l~~~~  192 (304)
                      +||+++++....+..+...  .+.++|++  .+.+..++.+++|++.          +|...|.+++|+| ++..|++|+
T Consensus        81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs  160 (304)
T 2ynn_A           81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (304)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred             EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence            9999999888777655443  56778877  3457778999999753          5788899999999 678999999


Q ss_pred             CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC--CCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCC
Q 036585          193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP--EGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAP  270 (304)
Q Consensus       193 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~  270 (304)
                      .|++|++||++++.....+..  .+...+..++|+|  ++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|
T Consensus       161 ~D~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p  238 (304)
T 2ynn_A          161 LDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP  238 (304)
T ss_dssp             TTSEEEEEETTCSSCSEEEEC--CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred             CCCeEEEEECCCCCccceecc--CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence            999999999988877666653  4567888899987  778999999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCc--eEEeccCCccc-cccccC
Q 036585          271 GSLMFVTGSSE--LSFWIPDLSKL-GAYVGR  298 (304)
Q Consensus       271 ~~~~l~s~~~d--~~iw~~~~~~~-~~~~~~  298 (304)
                      ++++|++++.|  +++|+....++ +.+..+
T Consensus       239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~  269 (304)
T 2ynn_A          239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (304)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence            99999999999  99999876443 444443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.4e-41  Score=287.32  Aligned_cols=284  Identities=20%  Similarity=0.325  Sum_probs=234.8

Q ss_pred             cceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585            9 EDKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   85 (304)
Q Consensus         9 ~~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~   85 (304)
                      ++...+++|...   +.++|+|++||+++.|++|+|||. ++++++++.+|...|.+++|+|++++|++++.   |+.|+
T Consensus         7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~---d~~i~   82 (577)
T 2ymu_A            7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASD---DKTVK   82 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEET---TSCEE
T ss_pred             EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeC---CCEEE
Confidence            455678888765   568899999999999999999995 68899999999999999999999999999998   99999


Q ss_pred             EEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec-cceeEecCCCe--EEEecCC
Q 036585           86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGL--VFGYEKG  162 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~  162 (304)
                      +||+ +++.+..+.+|...|.+++|+|++++|++++.|+.+++|+.............. .....+.+++.  .......
T Consensus        83 vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  161 (577)
T 2ymu_A           83 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK  161 (577)
T ss_dssp             EEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             EEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccccc
Confidence            9996 567888999999999999999999999999999999999976544322211111 11233444432  2222222


Q ss_pred             C--------eEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEE
Q 036585          163 P--------LDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVI  234 (304)
Q Consensus       163 ~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  234 (304)
                      .        ........+...+..+.++|+++++++++.||.|++||. +++....+.   .|...+.+++|+|++++|+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~---~~~~~v~~~~~s~dg~~l~  237 (577)
T 2ymu_A          162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDGQTIA  237 (577)
T ss_dssp             EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE---CCSSCEEEEEECTTSSCEE
T ss_pred             ceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEe---cCCCCEEEEEECCCCCEEE
Confidence            2        333444567889999999999999999999999999995 667777777   6889999999999999999


Q ss_pred             EecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccccccccCCCCC
Q 036585          235 SGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLGAYVGRNRGC  302 (304)
Q Consensus       235 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~~~~~~~~g~  302 (304)
                      +++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|  +++|+.+.+.+..+.+|...+
T Consensus       238 ~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v  306 (577)
T 2ymu_A          238 SASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV  306 (577)
T ss_dssp             EEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCE
T ss_pred             EEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCe
Confidence            9999999999995 677888899999999999999999999999998  999998887777777776543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.2e-40  Score=285.27  Aligned_cols=272  Identities=20%  Similarity=0.326  Sum_probs=235.5

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      .+.+.|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|+++.+++++.   |+.|++||+... .+..+.
T Consensus       267 ~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~---d~~i~~w~~~~~-~~~~~~  341 (577)
T 2ymu_A          267 GVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASD---DKTVKLWNRNGQ-HLQTLT  341 (577)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTSC-EEEEEC
T ss_pred             EEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeCCCC-eeEEEe
Confidence            4678899999999999999999996 46788889999999999999999999999998   999999998654 456778


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecCCCe--EEEecCCCeEEEEe------
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGL--VFGYEKGPLDIFSV------  169 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~------  169 (304)
                      +|...|.+++|+|+++++++++.|+.|++||.. ++....+..+..  ..+.+++++.  +.+..++.+.+|+.      
T Consensus       342 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~  420 (577)
T 2ymu_A          342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ  420 (577)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEE
Confidence            899999999999999999999999999999954 455555543333  2466777763  44566777777753      


Q ss_pred             --cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEec
Q 036585          170 --GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSV  247 (304)
Q Consensus       170 --~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~  247 (304)
                        .+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.   .|...+++++|+|++++|++++.|+.|++||.
T Consensus       421 ~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~---~~~~~v~~~~~spd~~~las~~~d~~i~iw~~  496 (577)
T 2ymu_A          421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  496 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEE---CCSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             EecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence              457889999999999999999999999999996 567777777   68899999999999999999999999999995


Q ss_pred             CCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccccccccCCCCC
Q 036585          248 RSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLGAYVGRNRGC  302 (304)
Q Consensus       248 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~~~~~~~~g~  302 (304)
                       +++++..+.+|...|++++|+|++++|++++.|  +++|+.+.+.+..+.+|...+
T Consensus       497 -~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v  552 (577)
T 2ymu_A          497 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV  552 (577)
T ss_dssp             -TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCE
T ss_pred             -CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCE
Confidence             788899999999999999999999999999999  999999888888888887654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.1e-41  Score=267.12  Aligned_cols=249  Identities=19%  Similarity=0.304  Sum_probs=213.1

Q ss_pred             ceeeeecccccceeEEEEccC----CCeEEEEecCCCCCceEEEEccCcee--eeecccccccEEEEEEcCCCCEEEEcc
Q 036585           48 TCLKTINSKKYGVDLVCFTSH----PTTVIYSSKNGWDESLRLLSLHDNKY--SRYFKGHHDRVVLLSLCSSKDCFISGS  121 (304)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~  121 (304)
                      .....+++|.+.|.+++|+|+    +..|++++.   |++|++|++.+++.  ...+.+|...|.+++|+|++.++++++
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~---D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s   99 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSL---DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSS   99 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-------CEEEEEET---TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred             heeeecccCCCcEEEEEEecCCCCCCCEEEEEcC---CCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEe
Confidence            345567789999999999985    568999998   99999999987653  456789999999999999999999999


Q ss_pred             cCCeEEEEeCCcceeeceEEEecc--ceeEecCCCeEE--EecCCCeEEEEec---------CCCCCceEEEEecCCcEE
Q 036585          122 LDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVF--GYEKGPLDIFSVG---------GDISDANVVKFSNDGRLM  188 (304)
Q Consensus       122 ~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l  188 (304)
                      .|++|++||+++++....+.....  ..+.++|++..+  +..++.+.+|++.         .+...+.+++|+|++++|
T Consensus       100 ~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  179 (321)
T 3ow8_A          100 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL  179 (321)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence            999999999999988777765433  357788887544  5566778887654         466789999999999999


Q ss_pred             EEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEe
Q 036585          189 LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKW  268 (304)
Q Consensus       189 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  268 (304)
                      ++++.||.|++||+++++.+..+.   .|..+|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|
T Consensus       180 asg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  256 (321)
T 3ow8_A          180 ASGAIDGIINIFDIATGKLLHTLE---GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF  256 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEEC---CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEc---ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEE
Confidence            999999999999999999888887   68899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEecCc--eEEeccCCc-cccccccCCCCC
Q 036585          269 APGSLMFVTGSSE--LSFWIPDLS-KLGAYVGRNRGC  302 (304)
Q Consensus       269 ~~~~~~l~s~~~d--~~iw~~~~~-~~~~~~~~~~g~  302 (304)
                      +|++++|++++.|  +++|++... .+..+.+|...+
T Consensus       257 sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v  293 (321)
T 3ow8_A          257 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQV  293 (321)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcE
Confidence            9999999999999  999999654 455666666543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.4e-40  Score=266.41  Aligned_cols=271  Identities=18%  Similarity=0.269  Sum_probs=221.8

Q ss_pred             eeeeecceee---Eeeccc-CcEEEEeeCCCeEEEEecCCcc-----eeeeecccccceeEEEEccCCCeEEEEecCCCC
Q 036585           11 KVSLELSEEI---LQSMEV-GIYLVTASDDESIRLYDVTAAT-----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD   81 (304)
Q Consensus        11 ~~~~~~~~~~---i~~~~~-~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d   81 (304)
                      ..++++|.+.   +.++|+ +++|+||+.|++|+|||+.+.+     +...+.+|...|.+++|+|++++|++++.   |
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~---d  107 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW---D  107 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET---T
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc---c
Confidence            4457788765   566776 6899999999999999987643     56778899999999999999999999998   9


Q ss_pred             CceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEE-e--ccceeEecCCC----
Q 036585           82 ESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-Q--GRPAAAYDDQG----  154 (304)
Q Consensus        82 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~--~~~~~~~~~~~----  154 (304)
                      +.|++|+............+...+..+.+++++++|++++.|+.+++||+........... +  ......+.++.    
T Consensus       108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            9999999999988888888888999999999999999999999999999876544322111 1  11223343332    


Q ss_pred             eEEEecCCCeEEEEe---------cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEE
Q 036585          155 LVFGYEKGPLDIFSV---------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  225 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~  225 (304)
                      .+.+..++.+++|++         .+|...|++++|+|++++|++++.||.|++||+++.+.+..+.    +...+.+++
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~  263 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD----GGDIINALC  263 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE----CSSCEEEEE
T ss_pred             EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec----CCceEEeee
Confidence            233555667777754         4588899999999999999999999999999999999988887    557899999


Q ss_pred             EcCCCcEEEEecCCCcEEEEecCCCceeeee---------eccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          226 FSPEGMFVISGSGDGSVHAWSVRSGKEVASW---------MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       226 ~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      |+|++.++ +++.|+.|++||++++..+..+         .+|...|++++|+|++++|++|+.|  ++||+++.
T Consensus       264 ~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          264 FSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             ECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             cCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            99988655 4557999999999887765544         3688899999999999999999999  99998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.1e-42  Score=272.53  Aligned_cols=244  Identities=15%  Similarity=0.183  Sum_probs=198.7

Q ss_pred             eecceee---EeecccCcEEEEeeCCCeEEEEecCCcc--eeeeecccccceeEEEEcc--CCCeEEEEecCCCCCceEE
Q 036585           14 LELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        14 ~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~v   86 (304)
                      +.+|...   +.++++|++||+|+.|++|++||+.+++  .+..+.+|..+|.+++|+|  +++.|++++.   |++|++
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~---D~~v~i   85 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY---DRKVII   85 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET---TSCEEE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC---CCEEEE
Confidence            4455544   6788999999999999999999998764  4678899999999999986  4899999998   999999


Q ss_pred             EEccCce--eeeecccccccEEEEEEcCC--CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585           87 LSLHDNK--YSRYFKGHHDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG  162 (304)
Q Consensus        87 wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (304)
                      ||+++++  ....+.+|...|.+++|+|+  +.+|++++.|+.|++||++.........                     
T Consensus        86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~---------------------  144 (316)
T 3bg1_A           86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK---------------------  144 (316)
T ss_dssp             ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC---------------------
T ss_pred             EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee---------------------
Confidence            9999873  56677889999999999997  7899999999999999988653211000                     


Q ss_pred             CeEEEEecCCCCCceEEEEecC-----------------CcEEEEeeCCCeEEEEEcCCCc---eeEEEEeCCCCCCcce
Q 036585          163 PLDIFSVGGDISDANVVKFSND-----------------GRLMLLTTMEGHIHVLDSFRGT---LLSTYNVKPVSRNSTL  222 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~~~~i~  222 (304)
                           .+.+|...+.+++|+|+                 +++|++++.|+.|++||++...   ....+.   .|...|.
T Consensus       145 -----~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~---~h~~~V~  216 (316)
T 3bg1_A          145 -----INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE---AHSDWVR  216 (316)
T ss_dssp             -----BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB---CCSSCEE
T ss_pred             -----eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc---cCCCceE
Confidence                 11256677888888887                 4789999999999999997653   333343   6889999


Q ss_pred             EEEEcCCC----cEEEEecCCCcEEEEecCCCc----eeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          223 EASFSPEG----MFVISGSGDGSVHAWSVRSGK----EVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       223 ~~~~s~~~----~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      +++|+|++    ++|++++.|++|++||+.+..    ....+..|...|.+++|+|++++|++++.|  ++||+.+.
T Consensus       217 ~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             EEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            99999986    899999999999999997631    234456789999999999999999999999  99998763

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.8e-41  Score=292.72  Aligned_cols=269  Identities=19%  Similarity=0.277  Sum_probs=222.4

Q ss_pred             eeeecceeeEe---eccc-CcEEEEeeCCCeEEEEecCCc-----ceeeeecccccceeEEEEccCCCeEEEEecCCCCC
Q 036585           12 VSLELSEEILQ---SMEV-GIYLVTASDDESIRLYDVTAA-----TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE   82 (304)
Q Consensus        12 ~~~~~~~~~i~---~~~~-~~~l~~~~~d~~i~vw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~   82 (304)
                      ..+++|.+.|.   ++++ +++|++|+.|++|++|++.+.     .....+.+|...|.+++|+|++++|++++.   |+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~---Dg  452 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW---DG  452 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET---TS
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC---CC
Confidence            45677877654   4455 579999999999999998753     345678899999999999999999999998   99


Q ss_pred             ceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEE-----eccceeEecCCC---
Q 036585           83 SLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-----QGRPAAAYDDQG---  154 (304)
Q Consensus        83 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~---  154 (304)
                      .|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+...........     .....+.+++++   
T Consensus       453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  532 (694)
T 3dm0_A          453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP  532 (694)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred             cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence            999999999999999999999999999999999999999999999999865433222110     112356677764   


Q ss_pred             -eEEEecCCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEE
Q 036585          155 -LVFGYEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  224 (304)
Q Consensus       155 -~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~  224 (304)
                       .+.+..++.+++|++.         +|...|++++|+|++++|++++.||.|++||+++++.+..+.    +...+.++
T Consensus       533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~  608 (694)
T 3dm0_A          533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE----ANSVIHAL  608 (694)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB----CSSCEEEE
T ss_pred             eEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec----CCCcEEEE
Confidence             4567778899998754         588899999999999999999999999999999998877665    45789999


Q ss_pred             EEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccC-------------------CCCceEEeCCCCcEEEEecCc--eE
Q 036585          225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD-------------------TEPPVIKWAPGSLMFVTGSSE--LS  283 (304)
Q Consensus       225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-------------------~~i~~~~~~~~~~~l~s~~~d--~~  283 (304)
                      +|+|++.+|++++ ++.|++||+++++.+..+..+.                   ..+++++|+|++++|++|+.|  ++
T Consensus       609 ~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~  687 (694)
T 3dm0_A          609 CFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIR  687 (694)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEE
Confidence            9999998888776 5569999999988776664321                   136789999999999999999  89


Q ss_pred             EeccC
Q 036585          284 FWIPD  288 (304)
Q Consensus       284 iw~~~  288 (304)
                      ||++.
T Consensus       688 iW~i~  692 (694)
T 3dm0_A          688 VWGIG  692 (694)
T ss_dssp             EEEC-
T ss_pred             EEecc
Confidence            99864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-41  Score=276.01  Aligned_cols=265  Identities=14%  Similarity=0.216  Sum_probs=227.5

Q ss_pred             eeEeecccCc-EEEEeeCCCeEEEEec----CCcc------eeeeecc----------cccceeEEEEccCCCeEEEEec
Q 036585           19 EILQSMEVGI-YLVTASDDESIRLYDV----TAAT------CLKTINS----------KKYGVDLVCFTSHPTTVIYSSK   77 (304)
Q Consensus        19 ~~i~~~~~~~-~l~~~~~d~~i~vw~~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~   77 (304)
                      ..+.++|+|+ +|++++.||.|++|++    .+++      ....+..          |...|.+++|+|++++|++++.
T Consensus        49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  128 (425)
T 1r5m_A           49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE  128 (425)
T ss_dssp             SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEET
T ss_pred             EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeC
Confidence            4588999999 9999999999999999    8877      4544444          6779999999999999999998


Q ss_pred             CCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec-------------
Q 036585           78 NGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-------------  144 (304)
Q Consensus        78 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------  144 (304)
                         |+.|++|| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++....+....             
T Consensus       129 ---dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (425)
T 1r5m_A          129 ---NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG  204 (425)
T ss_dssp             ---TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------
T ss_pred             ---CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccC
Confidence               99999999 6677888899999999999999999999999999999999999888776654332             


Q ss_pred             ----cceeEecCCC-eEEEecCCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEE
Q 036585          145 ----RPAAAYDDQG-LVFGYEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST  210 (304)
Q Consensus       145 ----~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  210 (304)
                          ...+.+.+++ .+.+..++.+.+|++.         .|...+.+++|+|++++|++++.||.|++||+++++....
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  284 (425)
T 1r5m_A          205 DGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC  284 (425)
T ss_dssp             -CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE
T ss_pred             CcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE
Confidence                2334455555 4456677888888754         4778899999999999999999999999999999988888


Q ss_pred             EEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          211 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       211 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      +.   .+...+.+++|+|++ ++++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|++++.|  +++|++.
T Consensus       285 ~~---~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          285 FY---GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             EC---CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred             ec---CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            86   688899999999999 99999999999999999999999999999999999999999999999988  9999986


Q ss_pred             Ccc
Q 036585          289 LSK  291 (304)
Q Consensus       289 ~~~  291 (304)
                      ...
T Consensus       361 ~~~  363 (425)
T 1r5m_A          361 KLN  363 (425)
T ss_dssp             HHH
T ss_pred             CCc
Confidence            544

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.3e-41  Score=274.60  Aligned_cols=271  Identities=14%  Similarity=0.189  Sum_probs=229.7

Q ss_pred             eeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcc------eeeeecccccceeEEEEccC----C---CeEEE
Q 036585           11 KVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAAT------CLKTINSKKYGVDLVCFTSH----P---TTVIY   74 (304)
Q Consensus        11 ~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~l~~   74 (304)
                      ...+++|...   +.+++  ++|++++.||.|++||+.+++      .+..+.+|...|.+++|+|+    +   ++|++
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence            3445566654   44555  899999999999999999887      78888999999999999999    9   99999


Q ss_pred             EecCCCCCceEEEEccCcee-----eeecccc-----cccEEEEEEc----CCCCE-EEEcccCCeEEEEeCCc------
Q 036585           75 SSKNGWDESLRLLSLHDNKY-----SRYFKGH-----HDRVVLLSLC----SSKDC-FISGSLDRTVLLWDQRA------  133 (304)
Q Consensus        75 ~~~~~~d~~i~vwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~------  133 (304)
                      ++.   |+.|++||+.+++.     ...+..|     ...|.+++|+    |++++ |++++.||.|++||+++      
T Consensus        87 ~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           87 TSF---SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EET---TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EcC---CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            998   99999999998886     7888888     5899999999    99999 99999999999999998      


Q ss_pred             ceeec-----eEEE---------eccceeEecCCC-eEEEecCCCeEEEEec---------C---C---CCCceEEEEec
Q 036585          134 EKCQG-----LLRV---------QGRPAAAYDDQG-LVFGYEKGPLDIFSVG---------G---D---ISDANVVKFSN  183 (304)
Q Consensus       134 ~~~~~-----~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~---~---~~~v~~~~~~~  183 (304)
                      ++...     .+..         .....+.+++++ .+.+..++.+.+|++.         .   |   ...+.+++|+|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~  243 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  243 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence            66555     4432         223457788776 2224556777777653         4   6   88999999999


Q ss_pred             CCcEEEEeeCC---CeEEEEEcCCCceeEEEEeCCC-------------CCCcceEEEEcCCCcEEEEecCCCcEEEEec
Q 036585          184 DGRLMLLTTME---GHIHVLDSFRGTLLSTYNVKPV-------------SRNSTLEASFSPEGMFVISGSGDGSVHAWSV  247 (304)
Q Consensus       184 ~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~  247 (304)
                      ++++|++++.|   |.|++||+++++.+..+.   .             |...|.+++|+|++++|++++.||.|++||+
T Consensus       244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  320 (397)
T 1sq9_A          244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLS---VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  320 (397)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEEC---BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEecCCCCceEEEEECCCCcccceec---cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            99999999999   999999999999888877   4             7889999999999999999999999999999


Q ss_pred             CCCceeeeee------cc---------------CCCCceEEeCCCC----------cEEEEecCc--eEEeccCC
Q 036585          248 RSGKEVASWM------SF---------------DTEPPVIKWAPGS----------LMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       248 ~~~~~~~~~~------~~---------------~~~i~~~~~~~~~----------~~l~s~~~d--~~iw~~~~  289 (304)
                      ++++++..+.      +|               ..+|++++|+|++          ++|++++.|  +++|+++.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            9999999998      78               9999999999998          799999988  99998764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.6e-41  Score=275.26  Aligned_cols=246  Identities=19%  Similarity=0.312  Sum_probs=217.9

Q ss_pred             eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEE
Q 036585           50 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLW  129 (304)
Q Consensus        50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  129 (304)
                      ...+.+|..+|.+++|+|+++.+++++.   |+.|++||+.+++....+.+|.+.|.+++|+|++++|++|+.|++|++|
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~---Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw  177 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASE---DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW  177 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEES---SSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            4567899999999999999999999998   9999999999999999999999999999999999999999999999999


Q ss_pred             eCCcceeeceEEEecc--ceeEecCCC--eEEEecCCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCe
Q 036585          130 DQRAEKCQGLLRVQGR--PAAAYDDQG--LVFGYEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGH  196 (304)
Q Consensus       130 d~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~  196 (304)
                      |+++.+....+..+..  ..+.+.+++  .+.+..++.+++|++.         +|...+.++.++|++.+|++++.||.
T Consensus       178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  257 (410)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence            9998887766654433  356677776  4456778889888754         57888999999999999999999999


Q ss_pred             EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC--------------------CcEEEEecCCCcEEEEecCCCceeeee
Q 036585          197 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE--------------------GMFVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       197 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      |++||+++++....+.   .|...|.+++|+|+                    +.+|++|+.|+.|++||+++++++..+
T Consensus       258 v~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~  334 (410)
T 1vyh_C          258 VRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  334 (410)
T ss_dssp             EEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCceeeEec---CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence            9999999999888877   68899999999996                    678999999999999999999999999


Q ss_pred             eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc-ccccccCCCC
Q 036585          257 MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK-LGAYVGRNRG  301 (304)
Q Consensus       257 ~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~-~~~~~~~~~g  301 (304)
                      .+|...|++++|+|++++|++++.|  +++|++...+ +..+.+|...
T Consensus       335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~  382 (410)
T 1vyh_C          335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF  382 (410)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC
T ss_pred             ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCc
Confidence            9999999999999999999999999  9999986543 5566666543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-41  Score=277.13  Aligned_cols=267  Identities=15%  Similarity=0.212  Sum_probs=227.4

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCC----cceeeeecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEccCc
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDN   92 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~~~~   92 (304)
                      ...+.+++++++|++++.||.|++||+.+    .+.+..+.+|...|.+++|+|+ +.+|++++.   |+.|++||+.++
T Consensus        70 v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~  146 (416)
T 2pm9_A           70 FNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN---NGEIFIWDMNKC  146 (416)
T ss_dssp             EEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS---SSCEEBCBTTTT
T ss_pred             eEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC---CCeEEEEECCCC
Confidence            34578899999999999999999999987    4578889999999999999998 889999998   999999999987


Q ss_pred             e------eee---ecccccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEEe--------ccceeEecCCC
Q 036585           93 K------YSR---YFKGHHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--------GRPAAAYDDQG  154 (304)
Q Consensus        93 ~------~~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~  154 (304)
                      +      ...   .+..|...|.+++|+|+ +.+|++++.|+.|++||+++++....+...        ....+.+++++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (416)
T 2pm9_A          147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN  226 (416)
T ss_dssp             SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred             ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence            6      332   24678999999999998 789999999999999999998887776543        23356788875


Q ss_pred             ---eEEEecCC---CeEEEEec-----------CCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC
Q 036585          155 ---LVFGYEKG---PLDIFSVG-----------GDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV  216 (304)
Q Consensus       155 ---~~~~~~~~---~~~~~~~~-----------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  216 (304)
                         .+.+..++   .+.+|++.           +|...|.+++|+| ++++|++++.||.|++||+++++.+..+.   .
T Consensus       227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~---~  303 (416)
T 2pm9_A          227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP---A  303 (416)
T ss_dssp             TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE---C
T ss_pred             CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec---C
Confidence               34455566   89999864           4667899999999 99999999999999999999999999888   6


Q ss_pred             CCCcceEEEEcCCC-cEEEEecCCCcEEEEecCCCceeeeee-----------------------------------ccC
Q 036585          217 SRNSTLEASFSPEG-MFVISGSGDGSVHAWSVRSGKEVASWM-----------------------------------SFD  260 (304)
Q Consensus       217 ~~~~i~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~-----------------------------------~~~  260 (304)
                      |...+.+++|+|++ .+|++++.|+.|++||+.+.+......                                   .|.
T Consensus       304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (416)
T 2pm9_A          304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG  383 (416)
T ss_dssp             SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred             CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence            88999999999998 899999999999999998765432221                                   166


Q ss_pred             CCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          261 TEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       261 ~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      .++.+++|+|+|++|++++.|  ++||++..+
T Consensus       384 ~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          384 EPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             CCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence            788899999999999999988  999998754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-39  Score=260.90  Aligned_cols=259  Identities=12%  Similarity=0.173  Sum_probs=222.0

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeee---ec--ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce-
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKT---IN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-   93 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~---~~--~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~-   93 (304)
                      .+.+++++++|++++ ||.|++||+.+++....   +.  .|...|.+++|+|+++.+++++.   |+.|++||+.+++ 
T Consensus        56 ~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~  131 (337)
T 1gxr_A           56 AVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE---ASTLSIWDLAAPTP  131 (337)
T ss_dssp             EEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES---SSEEEEEECCCC--
T ss_pred             EEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC---CCcEEEEECCCCCc
Confidence            477889999999999 99999999987654333   33  68889999999999999999998   9999999999877 


Q ss_pred             -eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecCCC--eEEEecCCCeEEEE
Q 036585           94 -YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQG--LVFGYEKGPLDIFS  168 (304)
Q Consensus        94 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~  168 (304)
                       ....+..|...|.+++|+|+++++++++.|+.|++||+++++....+..+..  ..+.+++++  .+.+..++.+.+|+
T Consensus       132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d  211 (337)
T 1gxr_A          132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence             5667778999999999999999999999999999999999887776654333  346677776  44466788888888


Q ss_pred             ecC--------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC
Q 036585          169 VGG--------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG  240 (304)
Q Consensus       169 ~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  240 (304)
                      +..        +...+.+++|+|+++++++++.+|.|++||+++++... +.   .+...+.+++|+|++++|++++.||
T Consensus       212 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~---~~~~~v~~~~~~~~~~~l~~~~~dg  287 (337)
T 1gxr_A          212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH---LHESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC---CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec---CCccceeEEEECCCCCEEEEecCCC
Confidence            653        56789999999999999999999999999999887543 33   5888999999999999999999999


Q ss_pred             cEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585          241 SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       241 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~  287 (304)
                      .|++||+.+++.+... .|...+.+++|+|++++|++++.|  +++|++
T Consensus       288 ~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          288 LLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            9999999998887544 588999999999999999999998  899975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-39  Score=256.89  Aligned_cols=271  Identities=17%  Similarity=0.260  Sum_probs=228.4

Q ss_pred             cceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585            9 EDKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   85 (304)
Q Consensus         9 ~~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~   85 (304)
                      +....+.+|...   +.+ +++++|++++.||.|++||+.+++....+..|...|.+++|+|+++.+++++.   |+.|+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~   84 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK---DTMIN   84 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET---TSCEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC---CCeEE
Confidence            445567777655   455 78999999999999999999999999999999999999999999999999998   99999


Q ss_pred             EEEccCc---eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccce--eEe---cCCCeEE
Q 036585           86 LLSLHDN---KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA--AAY---DDQGLVF  157 (304)
Q Consensus        86 vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~---~~~~~~~  157 (304)
                      +|++...   +.+..+.+|...|.++.|  +++++++++.|+.|++||  ..+....+..+....  +.+   +.+..+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence            9998764   557778889999999999  577999999999999999  444444444433332  333   3344566


Q ss_pred             EecCCCeEEEEec-------C-CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585          158 GYEKGPLDIFSVG-------G-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  229 (304)
Q Consensus       158 ~~~~~~~~~~~~~-------~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~  229 (304)
                      +..++.+.+|+..       . +...+.+++|+|++. +++++.||.|++||+++++.+..+.   .|...+++++|+|+
T Consensus       161 ~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~  236 (313)
T 3odt_A          161 ASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE---GHESFVYCIKLLPN  236 (313)
T ss_dssp             EETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECTT
T ss_pred             EECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh---cCCceEEEEEEecC
Confidence            7778888888643       3 788999999999998 9999999999999999999999888   68899999999999


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcccc
Q 036585          230 GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLG  293 (304)
Q Consensus       230 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~  293 (304)
                      + .|++++.||.|++||+++++++..+..|..+|.+++|+|+++++ +++.|  +++|+++..++.
T Consensus       237 ~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~dg~i~iw~~~~~~~~  300 (313)
T 3odt_A          237 G-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDII-VGSSDNLVRIFSQEKSRWA  300 (313)
T ss_dssp             S-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEE-EEETTSCEEEEESCGGGCC
T ss_pred             C-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEE-EEeCCCcEEEEeCCCCcee
Confidence            9 58899999999999999999999999999999999999999855 46666  999999876653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.7e-42  Score=280.37  Aligned_cols=238  Identities=14%  Similarity=0.118  Sum_probs=200.0

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCc--ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce--
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAA--TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--   93 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~--   93 (304)
                      ...+.++|+|++|++++.|+.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.   |+.|++||+.+++  
T Consensus        14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---d~~v~vwd~~~~~~~   90 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ---DRNAYVYEKRPDGTW   90 (377)
T ss_dssp             CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET---TSSEEEC------CC
T ss_pred             EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC---CCeEEEEEcCCCCce
Confidence            446789999999999999999999999988  788899999999999999999999999998   9999999999877  


Q ss_pred             -eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC-
Q 036585           94 -YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG-  171 (304)
Q Consensus        94 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  171 (304)
                       ....+..|...|.+++|+|++++|++++.|+.|++||+++++......                          .+.. 
T Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------------------------~~~~~  144 (377)
T 3dwl_C           91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK--------------------------HLKRP  144 (377)
T ss_dssp             CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE--------------------------EECSS
T ss_pred             eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee--------------------------Eeecc
Confidence             667778899999999999999999999999999999998876321111                          1123 


Q ss_pred             CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC------------------ceeEEEEeCCCCCCcceEEEEcCCCcEE
Q 036585          172 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG------------------TLLSTYNVKPVSRNSTLEASFSPEGMFV  233 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l  233 (304)
                      |...|.+++|+|++++|++++.||.|++||++..                  +....+    .|...|.+++|+|++++|
T Consensus       145 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l  220 (377)
T 3dwl_C          145 LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNAL  220 (377)
T ss_dssp             CCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCE
T ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEE
Confidence            7789999999999999999999999999998632                  222222    588899999999999999


Q ss_pred             EEecCCCcEEEEecCCCce----eeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccC
Q 036585          234 ISGSGDGSVHAWSVRSGKE----VASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPD  288 (304)
Q Consensus       234 ~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~  288 (304)
                      ++++.||.|++||+++++.    +..+.+|..+|.+++|+|++++|++++.+ +.+|...
T Consensus       221 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          221 AYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             EEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred             EEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence            9999999999999999887    78889999999999999999999999988 7788775

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.3e-40  Score=270.65  Aligned_cols=262  Identities=14%  Similarity=0.169  Sum_probs=221.1

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG  100 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~  100 (304)
                      ..+++++++|++++.||.|++||+.+++....+.+|...|.+++|+|++++|++++.   |+.|++||+.+++.+..+.+
T Consensus       103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~  179 (420)
T 3vl1_A          103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQ---DMQLKIWSVKDGSNPRTLIG  179 (420)
T ss_dssp             EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTCCCCEEEEC
T ss_pred             EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeC---CCeEEEEeCCCCcCceEEcC
Confidence            356789999999999999999999999999888999999999999999999999998   99999999999999999999


Q ss_pred             ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEe--------------------------ccceeEecCCC
Q 036585          101 HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--------------------------GRPAAAYDDQG  154 (304)
Q Consensus       101 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------------------~~~~~~~~~~~  154 (304)
                      |...|.+++|+|++++|++++.|+.|++||+++++....+...                          ....+.+++++
T Consensus       180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (420)
T 3vl1_A          180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG  259 (420)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence            9999999999999999999999999999999998877766531                          11124456666


Q ss_pred             --eEEEecCCCeEEEEec----------CCCCCceEEEEecCCc-EEEEeeCCCeEEEEEcCCCce-eEEEEeCCCCCCc
Q 036585          155 --LVFGYEKGPLDIFSVG----------GDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTL-LSTYNVKPVSRNS  220 (304)
Q Consensus       155 --~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~  220 (304)
                        .+.+..++.+.+|++.          .|...+.+++|+|+++ +|++++.||.|++||+++++. +..+..  .+...
T Consensus       260 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~--~~~~~  337 (420)
T 3vl1_A          260 KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI--NEGTP  337 (420)
T ss_dssp             EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE--STTSC
T ss_pred             CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc--cCCCC
Confidence              3446678889998764          3667899999999999 999999999999999998754 566663  25667


Q ss_pred             ceEEEEcCCCcEEEEecCCCcEEEEecCCCc---------eeeeeeccCCCCceEEeCCCCc----EEEEecCc-eEEec
Q 036585          221 TLEASFSPEGMFVISGSGDGSVHAWSVRSGK---------EVASWMSFDTEPPVIKWAPGSL----MFVTGSSE-LSFWI  286 (304)
Q Consensus       221 i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~----~l~s~~~d-~~iw~  286 (304)
                      +.++.+ +++++|++++.|+.|++||+.+..         ....+..|...|.+++|+|++.    ++++|+.+ +.+|+
T Consensus       338 v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          338 INNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN  416 (420)
T ss_dssp             EEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred             ceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence            887755 678899999999999999997732         2234567889999999999998    66666666 99998


Q ss_pred             cC
Q 036585          287 PD  288 (304)
Q Consensus       287 ~~  288 (304)
                      ++
T Consensus       417 ~~  418 (420)
T 3vl1_A          417 LS  418 (420)
T ss_dssp             SC
T ss_pred             cc
Confidence            75

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-40  Score=267.56  Aligned_cols=248  Identities=13%  Similarity=0.166  Sum_probs=210.2

Q ss_pred             eeeecceee---EeecccCcEEEEeeCCCeEEEEecC--CcceeeeecccccceeEEEEccC--CCeEEEEecCCCCCce
Q 036585           12 VSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDESL   84 (304)
Q Consensus        12 ~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~d~~i   84 (304)
                      ..+++|...   +.+++++++|++++.||.|++||+.  +++.+..+.+|...|.+++|+++  +.+|++++.   |+.|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~v   81 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---DGKV   81 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET---TSCE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc---CCEE
Confidence            345566554   5678999999999999999999998  66778889999999999999987  899999998   9999


Q ss_pred             EEEEccCce--eeeecccccccEEEEEEcCC--CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585           85 RLLSLHDNK--YSRYFKGHHDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE  160 (304)
Q Consensus        85 ~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (304)
                      ++||+.+++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||++.........                   
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------------------  142 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-------------------  142 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE-------------------
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE-------------------
Confidence            999999987  67778889999999999999  9999999999999999998875433332                   


Q ss_pred             CCCeEEEEecCCCCCceEEEEec-------------CCcEEEEeeCCCeEEEEEcCCCceeEEE-EeCCCCCCcceEEEE
Q 036585          161 KGPLDIFSVGGDISDANVVKFSN-------------DGRLMLLTTMEGHIHVLDSFRGTLLSTY-NVKPVSRNSTLEASF  226 (304)
Q Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~~  226 (304)
                              +..|...|.+++|+|             ++.+|++++.||.|++||+++++..... .....|...|.+++|
T Consensus       143 --------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~  214 (379)
T 3jrp_A          143 --------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  214 (379)
T ss_dssp             --------EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             --------ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE
Confidence                    225778899999999             6999999999999999999876543222 122268899999999


Q ss_pred             cCC---CcEEEEecCCCcEEEEecCCCc-----eeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          227 SPE---GMFVISGSGDGSVHAWSVRSGK-----EVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       227 s~~---~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      +|+   +++|++++.||.|++||+++++     .+.....|...|++++|+|++++|++++.|  +++|+++.
T Consensus       215 sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          215 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            999   8999999999999999998864     222234588899999999999999999988  99999863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7e-40  Score=262.95  Aligned_cols=256  Identities=10%  Similarity=0.143  Sum_probs=214.7

Q ss_pred             eeccee---eEeecccCcEEEEeeCCCeEEEEecCCc----ceeeeecccccceeEEEEcc--CCCeEEEEecCCCCCce
Q 036585           14 LELSEE---ILQSMEVGIYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTS--HPTTVIYSSKNGWDESL   84 (304)
Q Consensus        14 ~~~~~~---~i~~~~~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i   84 (304)
                      +.+|..   .+.+++++++|++++.||.|++||+.++    +....+.+|...|.+++|+|  ++++|++++.   |+.|
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~---dg~v   83 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY---DKTV   83 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET---TSCE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC---CCeE
Confidence            445554   4678899999999999999999999876    46677889999999999999  6999999998   9999


Q ss_pred             EEEEccCc---------eeeeecccccccEEEEEEcCC--CCEEEEcccCCeEEEEeCCcceeeceEEEeccce-eEecC
Q 036585           85 RLLSLHDN---------KYSRYFKGHHDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA-AAYDD  152 (304)
Q Consensus        85 ~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~  152 (304)
                      ++||+.++         +.+..+..|...|.+++|+|+  +.++++++.||.|++||+++++....+....... ...  
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--  161 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI--  161 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC--
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc--
Confidence            99999887         557778889999999999999  9999999999999999999888776654322110 000  


Q ss_pred             CCeEEEecCCCeEEEEecCCCCCceEEEEecC---CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585          153 QGLVFGYEKGPLDIFSVGGDISDANVVKFSND---GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  229 (304)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~  229 (304)
                                     ....+...+.+++|+|+   +..+++++.++.+.+|+...++...... ...|...|++++|+|+
T Consensus       162 ---------------~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~~p~  225 (351)
T 3f3f_A          162 ---------------PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK-LPGHKSLIRSISWAPS  225 (351)
T ss_dssp             ---------------CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEE-CCCCCSCEEEEEECCC
T ss_pred             ---------------ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeee-cCCCCcceeEEEECCC
Confidence                           11246778999999997   8999999999999888887776533322 2368899999999999


Q ss_pred             C----cEEEEecCCCcEEEEecCCC----------------------------------------------ceeeeeecc
Q 036585          230 G----MFVISGSGDGSVHAWSVRSG----------------------------------------------KEVASWMSF  259 (304)
Q Consensus       230 ~----~~l~~~~~dg~i~v~d~~~~----------------------------------------------~~~~~~~~~  259 (304)
                      +    ++|++++.||.|++||++++                                              +.+..+.+|
T Consensus       226 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  305 (351)
T 3f3f_A          226 IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH  305 (351)
T ss_dssp             SSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT
T ss_pred             CCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence            8    89999999999999999864                                              556677889


Q ss_pred             CCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          260 DTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       260 ~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      ...|++++|+|++++|++++.|  +++|+++..
T Consensus       306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence            9999999999999999999999  999999764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2e-40  Score=267.24  Aligned_cols=268  Identities=15%  Similarity=0.238  Sum_probs=216.6

Q ss_pred             eeEeecccCcE-EEEeeC---CCeEEEEecCCcceeeee-cccccceeEEEEccC---CCeEEEEecCCCCCceEEEEcc
Q 036585           19 EILQSMEVGIY-LVTASD---DESIRLYDVTAATCLKTI-NSKKYGVDLVCFTSH---PTTVIYSSKNGWDESLRLLSLH   90 (304)
Q Consensus        19 ~~i~~~~~~~~-l~~~~~---d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~~~~d~~i~vwd~~   90 (304)
                      ..+.++|+++. +++++.   |+.|++||+.+++..... .+|..+|.+++|+|+   ++.|++++.   |+.|++||+.
T Consensus        22 ~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~   98 (357)
T 3i2n_A           22 FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF---GGNLHIWNLE   98 (357)
T ss_dssp             EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET---TSCEEEECTT
T ss_pred             EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC---CCeEEEEeCC
Confidence            34678898855 456665   899999999988765443 378899999999998   699999998   9999999999


Q ss_pred             Cce-eeeecccccccEEEEEE------cCCCCEEEEcccCCeEEEEeCCcce-eeceEEEecc----c--eeE----ecC
Q 036585           91 DNK-YSRYFKGHHDRVVLLSL------CSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGR----P--AAA----YDD  152 (304)
Q Consensus        91 ~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~--~~~----~~~  152 (304)
                      +++ .+..+.+|...|.++.|      +|++++|++++.|+.|++||++++. ....+.....    .  .+.    +++
T Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  178 (357)
T 3i2n_A           99 APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ  178 (357)
T ss_dssp             SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-
T ss_pred             CCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC
Confidence            988 88889999999999955      6789999999999999999999876 4444432211    1  222    445


Q ss_pred             CC--eEEEecCCCeEEEEecC--------CCCCceEEEEec---CCcEEEEeeCCCeEEEEEcCCCceeEEEE--eCCCC
Q 036585          153 QG--LVFGYEKGPLDIFSVGG--------DISDANVVKFSN---DGRLMLLTTMEGHIHVLDSFRGTLLSTYN--VKPVS  217 (304)
Q Consensus       153 ~~--~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~  217 (304)
                      ++  .+.+..++.+.+|++..        +...+.+++|+|   ++.++++++.||.|++||+++++....+.  ....|
T Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  258 (357)
T 3i2n_A          179 EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH  258 (357)
T ss_dssp             CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC
T ss_pred             CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC
Confidence            55  44466678888888653        678899999999   99999999999999999998876654443  11258


Q ss_pred             CCcceEEEEcCCCc-EEEEecCCCcEEEEecCCC-------------------ceeeeeeccCCCCceEEeCCCCcEEE-
Q 036585          218 RNSTLEASFSPEGM-FVISGSGDGSVHAWSVRSG-------------------KEVASWMSFDTEPPVIKWAPGSLMFV-  276 (304)
Q Consensus       218 ~~~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~l~-  276 (304)
                      ...|++++|+|+++ +|++++.||.|++||++++                   +++..+.+|..+|++++|+|++++|+ 
T Consensus       259 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  338 (357)
T 3i2n_A          259 KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCV  338 (357)
T ss_dssp             SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEE
T ss_pred             cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEE
Confidence            89999999999998 8999999999999999754                   35667788999999999999999998 


Q ss_pred             EecCc--eEEeccCC
Q 036585          277 TGSSE--LSFWIPDL  289 (304)
Q Consensus       277 s~~~d--~~iw~~~~  289 (304)
                      +++.|  +++|++..
T Consensus       339 s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          339 CSSFDQTVRVLIVTK  353 (357)
T ss_dssp             EEETTSEEEEEEECC
T ss_pred             EecCCCcEEEEECCC
Confidence            78888  89998753

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=263.96  Aligned_cols=263  Identities=17%  Similarity=0.240  Sum_probs=221.7

Q ss_pred             eeeeccee---eEeeccc---CcEEEEeeCCCeEEEEecCC-ccee-eeecccccceeEEEEccCCCeEEEEecCCCCCc
Q 036585           12 VSLELSEE---ILQSMEV---GIYLVTASDDESIRLYDVTA-ATCL-KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   83 (304)
Q Consensus        12 ~~~~~~~~---~i~~~~~---~~~l~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~   83 (304)
                      ..+..|..   .+.++|+   |++|++++.||.|++||+.+ ++.+ ..+.+|...|.+++|+|++++|++++.   |+.
T Consensus        33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---dg~  109 (368)
T 3mmy_A           33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC---DKT  109 (368)
T ss_dssp             ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET---TSE
T ss_pred             EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC---CCc
Confidence            34445544   4678888   69999999999999999987 5544 778899999999999999999999998   999


Q ss_pred             eEEEEccCceeeeecccccccEEEEEE--cCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc-eeEecCCCeEEEec
Q 036585           84 LRLLSLHDNKYSRYFKGHHDRVVLLSL--CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFGYE  160 (304)
Q Consensus        84 i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  160 (304)
                      |++||+.+++.+. +..|...|.+++|  +|++++|++++.|+.|++||+++++....+..+... ......+..+.+..
T Consensus       110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (368)
T 3mmy_A          110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATA  188 (368)
T ss_dssp             EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEG
T ss_pred             EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeC
Confidence            9999999988766 4569999999999  889999999999999999999998887777654432 34455666777888


Q ss_pred             CCCeEEEEecCC-----------CCCceEEEEecCCcE----EEEeeCCCeEEEEEcCCC---ceeEEEEeCCCCCC---
Q 036585          161 KGPLDIFSVGGD-----------ISDANVVKFSNDGRL----MLLTTMEGHIHVLDSFRG---TLLSTYNVKPVSRN---  219 (304)
Q Consensus       161 ~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~----l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~~~---  219 (304)
                      ++.+.+|++...           .....++.+.++...    +++++.||.|++||++..   +....+.   .|..   
T Consensus       189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~---~~~~~~~  265 (368)
T 3mmy_A          189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK---CHRSNGT  265 (368)
T ss_dssp             GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE---CSEEC--
T ss_pred             CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee---eeecccc
Confidence            888999887643           244566677666554    999999999999999887   4555665   3433   


Q ss_pred             ---------cceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585          220 ---------STLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       220 ---------~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                               .|++++|+|++++|++++.||.|++||+++++++..+..|..+|++++|+|++++|++++.|
T Consensus       266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             --CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred             cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence                     79999999999999999999999999999999999999999999999999999999999887

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.4e-40  Score=271.11  Aligned_cols=247  Identities=17%  Similarity=0.226  Sum_probs=213.9

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      .+.++|+|++|++++.|+.|++||+.+++....+..| ..+....|+|++++|++++.   |+.|++||+.+++....+.
T Consensus        61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~  136 (420)
T 3vl1_A           61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTT---EGDIKVLDSNFNLQREIDQ  136 (420)
T ss_dssp             TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEET---TSCEEEECTTSCEEEEETT
T ss_pred             ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEEC---CCCEEEEeCCCcceeeecc
Confidence            5788999999999999999999999988887777776 35556688999999999998   9999999999999998888


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV  179 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  179 (304)
                      +|...|.+++|+|++++|++++.|+.|++||+++++....+.                             +|...|.++
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----------------------------~h~~~v~~~  187 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-----------------------------GHRATVTDI  187 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-----------------------------CCSSCEEEE
T ss_pred             cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-----------------------------CCCCcEEEE
Confidence            999999999999999999999999999999999887655443                             577899999


Q ss_pred             EEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCc---------------------ceEEEEcCCCcEEEEecC
Q 036585          180 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS---------------------TLEASFSPEGMFVISGSG  238 (304)
Q Consensus       180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~---------------------i~~~~~s~~~~~l~~~~~  238 (304)
                      +|+|++++|++++.||.|++||+++++....+.....+...                     +.+++|+|++++|++++.
T Consensus       188 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (420)
T 3vl1_A          188 AIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV  267 (420)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET
T ss_pred             EEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC
Confidence            99999999999999999999999999998888754334444                     444556899999999999


Q ss_pred             CCcEEEEecCCCceeeee-eccCCCCceEEeCCCCc-EEEEecCc--eEEeccCCcc--ccccccCC
Q 036585          239 DGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPGSL-MFVTGSSE--LSFWIPDLSK--LGAYVGRN  299 (304)
Q Consensus       239 dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~l~s~~~d--~~iw~~~~~~--~~~~~~~~  299 (304)
                      ||.|++||+++++.+..+ ..|...|++++|+|++. +|++++.|  +++|++...+  +..+.+|+
T Consensus       268 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~  334 (420)
T 3vl1_A          268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE  334 (420)
T ss_dssp             TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST
T ss_pred             CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC
Confidence            999999999998887766 45888999999999998 99999998  9999997542  45555544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.3e-39  Score=259.46  Aligned_cols=249  Identities=13%  Similarity=0.225  Sum_probs=210.0

Q ss_pred             cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeE
Q 036585           47 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTV  126 (304)
Q Consensus        47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  126 (304)
                      .+...++.+|...|.+++|+|++++|++++.   |+.|++||+.+++.+..+..|...|.+++|+|+++++++++.|+.+
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v  121 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQ---DGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEET---TTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeC---CCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeE
Confidence            4556788999999999999999999999998   9999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCccee----eceEEEeccc--eeEecCCC-eEEEecCCCeEEEEec---------CCCCCceEEEEecCCcEEEE
Q 036585          127 LLWDQRAEKC----QGLLRVQGRP--AAAYDDQG-LVFGYEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLL  190 (304)
Q Consensus       127 ~iwd~~~~~~----~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~  190 (304)
                      ++||+.+...    ...+..+...  .+.+.+++ .+.+..++.+.+|++.         +|...|.+++|+|+++++++
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  201 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence            9999987532    2222222222  33444444 4456677888888753         58889999999999999999


Q ss_pred             eeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec--cCCCCceEEe
Q 036585          191 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS--FDTEPPVIKW  268 (304)
Q Consensus       191 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~i~~~~~  268 (304)
                      ++.||.|++||+++++....+.   .|...|++++|+|++++|++|+.||.|++||+++++.+..+..  +...|++++|
T Consensus       202 g~~d~~v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~  278 (340)
T 1got_B          202 GACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF  278 (340)
T ss_dssp             EETTSCEEEEETTTCSEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             EeCCCcEEEEECCCCeeEEEEc---CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEE
Confidence            9999999999999999888887   6889999999999999999999999999999999887766642  3347999999


Q ss_pred             CCCCcEEEEecCc--eEEeccCC-ccccccccCCCC
Q 036585          269 APGSLMFVTGSSE--LSFWIPDL-SKLGAYVGRNRG  301 (304)
Q Consensus       269 ~~~~~~l~s~~~d--~~iw~~~~-~~~~~~~~~~~g  301 (304)
                      +|++++|++|+.|  +++|+... ..+..+.+|...
T Consensus       279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~  314 (340)
T 1got_B          279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR  314 (340)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCc
Confidence            9999999999999  99999854 445666777654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-39  Score=262.98  Aligned_cols=261  Identities=13%  Similarity=0.194  Sum_probs=220.2

Q ss_pred             eEeeccc----CcEEEEeeCCCeEEEEecCCcceeeeeccc-----ccceeEEEEccC----CCeEEEEecCCCCCceEE
Q 036585           20 ILQSMEV----GIYLVTASDDESIRLYDVTAATCLKTINSK-----KYGVDLVCFTSH----PTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        20 ~i~~~~~----~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-----~~~v~~~~~~~~----~~~l~~~~~~~~d~~i~v   86 (304)
                      .+.++|+    ...+++++.++.|++||+.+++.+..+..|     ...|.+++|+|+    +.+|++++.   |+.|++
T Consensus        23 ~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~---dg~i~v   99 (366)
T 3k26_A           23 GVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS---RGIIRI   99 (366)
T ss_dssp             EEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET---TCEEEE
T ss_pred             EEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC---CCEEEE
Confidence            4567763    456666667779999999988887777654     467999999999    668999998   999999


Q ss_pred             EEccCceeeeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEE---Ee--ccceeEecCCC--eEEE
Q 036585           87 LSLHDNKYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLR---VQ--GRPAAAYDDQG--LVFG  158 (304)
Q Consensus        87 wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~--~~~~~~~~~~~--~~~~  158 (304)
                      ||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++....+.   .+  ....+.+++++  .+.+
T Consensus       100 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  179 (366)
T 3k26_A          100 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC  179 (366)
T ss_dssp             ECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEE
T ss_pred             EEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEe
Confidence            99999999999999999999999999 89999999999999999999988776662   22  23356777776  4456


Q ss_pred             ecCCCeEEEEecC-------------------------------------CCCCceEEEEecCCcEEEEeeCCCeEEEEE
Q 036585          159 YEKGPLDIFSVGG-------------------------------------DISDANVVKFSNDGRLMLLTTMEGHIHVLD  201 (304)
Q Consensus       159 ~~~~~~~~~~~~~-------------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  201 (304)
                      ..++.+.+|++..                                     |...|.+++|+  ++++++++.||.|++||
T Consensus       180 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd  257 (366)
T 3k26_A          180 GMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWK  257 (366)
T ss_dssp             ETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEE
T ss_pred             cCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEe
Confidence            6789999998762                                     78889999998  77999999999999999


Q ss_pred             cCCCce--------------eEEEEeCCCCCCcceEEEEcCC--CcEEEEecCCCcEEEEecCCCcee----eeeecc--
Q 036585          202 SFRGTL--------------LSTYNVKPVSRNSTLEASFSPE--GMFVISGSGDGSVHAWSVRSGKEV----ASWMSF--  259 (304)
Q Consensus       202 ~~~~~~--------------~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~--  259 (304)
                      +++++.              +..+.   .+...+++++|+|+  +++|++++.||.|++||+.++++.    ..+..|  
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  334 (366)
T 3k26_A          258 PGKMEDDIDKIKPSESNVTILGRFD---YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKC  334 (366)
T ss_dssp             ESSTTCCGGGCCTTCCCEEEEEEEE---CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTC
T ss_pred             CCCccccccccccCCcchheecccc---ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccccc
Confidence            987654              55555   68889999999999  999999999999999999987643    366777  


Q ss_pred             CCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          260 DTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       260 ~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      ...|++++|+|++++|++++.|  +++|++.
T Consensus       335 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          335 GAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            7899999999999999999999  8899864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1e-38  Score=262.86  Aligned_cols=259  Identities=16%  Similarity=0.220  Sum_probs=215.0

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeec--ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ..+.|++. ++||+|. |++|+|||..+++....+.  +|...|.+++|+|++++|++|+.   |+.|++||+++++.+.
T Consensus       109 ~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~---Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          109 NLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS---SAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             BCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEE
T ss_pred             eeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC---CCeEEEEEcCCCcEEE
Confidence            34666654 5777765 8999999999998877665  56778999999999999999998   9999999999999999


Q ss_pred             ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee-ceEEEecc--ceeEecCCCe--EEEecCCCeEEEEec-
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-GLLRVQGR--PAAAYDDQGL--VFGYEKGPLDIFSVG-  170 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~-  170 (304)
                      .+.+|...+.++.++  +..+++++.|+.+++||.+..... ..+..+..  ....+.+++.  +.+..++.+.+|+.. 
T Consensus       184 ~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            999999999998875  679999999999999998865433 33332222  2455666653  446667888888753 


Q ss_pred             ------------CCCCCceEEEEecCCc-EEEE--eeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEE
Q 036585          171 ------------GDISDANVVKFSNDGR-LMLL--TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  235 (304)
Q Consensus       171 ------------~~~~~v~~~~~~~~~~-~l~~--~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  235 (304)
                                  .|...|.+++|+|++. .+++  |+.|++|++||+.+++....+.    ....+.++.|+|+++.+++
T Consensus       262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~----~~~~v~~~~~~~~~~~lv~  337 (420)
T 4gga_A          262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELIS  337 (420)
T ss_dssp             CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE----CSSCEEEEEEETTTTEEEE
T ss_pred             ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec----cccceeeeeecCCCCeEEE
Confidence                        3667899999999765 4444  4579999999999999998887    5567899999999998887


Q ss_pred             ec--CCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          236 GS--GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       236 ~~--~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      ++  .|+.|+|||+.+++++..+.+|.++|++++|+|+|++|+||+.|  ++||++.
T Consensus       338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            54  79999999999999999999999999999999999999999999  9999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.6e-39  Score=268.42  Aligned_cols=273  Identities=19%  Similarity=0.290  Sum_probs=228.4

Q ss_pred             ceeeeecceee-E-eecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           10 DKVSLELSEEI-L-QSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        10 ~~~~~~~~~~~-i-~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ....+.+|... + .+..++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .+++++.   |+.|++|
T Consensus       113 ~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~---dg~i~vw  188 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGST---DRTVRVW  188 (464)
T ss_dssp             EEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEET---TSCEEEE
T ss_pred             ceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeC---CCCEEEE
Confidence            34466677654 2 344578999999999999999999999999999999999999999988 8899988   9999999


Q ss_pred             EccCceeeeecccccccEEEEEEc--CCCCEEEEcccCCeEEEEeCCcceeece-----------------------EEE
Q 036585           88 SLHDNKYSRYFKGHHDRVVLLSLC--SSKDCFISGSLDRTVLLWDQRAEKCQGL-----------------------LRV  142 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------------~~~  142 (304)
                      |+.+++.+..+.+|...|.+++|+  ++++++++++.|+.|++||+++......                       +..
T Consensus       189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            999999999999999999999998  5778999999999999999987654322                       111


Q ss_pred             ecccee--EecCCCeEEEecCCCeEEEEe---------cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEE
Q 036585          143 QGRPAA--AYDDQGLVFGYEKGPLDIFSV---------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY  211 (304)
Q Consensus       143 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  211 (304)
                      +.....  ..+.+..+.+..++.+.+|++         .+|...|.+++|+|+++++++++.||.|++||+++++.+..+
T Consensus       269 ~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  348 (464)
T 3v7d_B          269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  348 (464)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            112222  223344556777788888865         357889999999999999999999999999999999999888


Q ss_pred             EeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCc
Q 036585          212 NVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLS  290 (304)
Q Consensus       212 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~  290 (304)
                      .   .|...+.+++|+  +++|++++.||.|++||+.+++...... +...+..++|+|+++++++++.+ +++|+++..
T Consensus       349 ~---~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g  422 (464)
T 3v7d_B          349 Q---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQFNIYNLRSG  422 (464)
T ss_dssp             C---CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEETTEEEEEETTTC
T ss_pred             e---CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEecCCeEEEEECCCC
Confidence            7   688999999997  5799999999999999999887665553 67788899999999999999966 999999765


Q ss_pred             cc
Q 036585          291 KL  292 (304)
Q Consensus       291 ~~  292 (304)
                      ++
T Consensus       423 ~~  424 (464)
T 3v7d_B          423 KL  424 (464)
T ss_dssp             CE
T ss_pred             cE
Confidence            54

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.9e-40  Score=264.69  Aligned_cols=241  Identities=12%  Similarity=0.087  Sum_probs=211.4

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      ...+.+++++++|++++.|+.|++||+.+++  .+..+.+|...|.+++|+|++++|++++.   |+.|++||+.+++..
T Consensus        11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~   87 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT---DRNAYVWTLKGRTWK   87 (372)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET---TSCEEEEEEETTEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC---CCeEEEEECCCCeee
Confidence            3457889999999999999999999999887  88899999999999999999999999998   999999999988644


Q ss_pred             e--ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585           96 R--YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI  173 (304)
Q Consensus        96 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                      .  .+..|...|.+++|+|++++|++++.|+.|++||++...........                         ...|.
T Consensus        88 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-------------------------~~~~~  142 (372)
T 1k8k_C           88 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI-------------------------KKPIR  142 (372)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE-------------------------CTTCC
T ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee-------------------------ecccC
Confidence            3  34678999999999999999999999999999999876532222111                         12467


Q ss_pred             CCceEEEEecCCcEEEEeeCCCeEEEEEcC------------------CCceeEEEEeCCCCCCcceEEEEcCCCcEEEE
Q 036585          174 SDANVVKFSNDGRLMLLTTMEGHIHVLDSF------------------RGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  235 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~------------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  235 (304)
                      ..|.+++|+|++++|++++.||.|++||++                  .++....+.   .|...+.+++|+|++++|++
T Consensus       143 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~  219 (372)
T 1k8k_C          143 STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS---SSCGWVHGVCFSANGSRVAW  219 (372)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC---CCSSCEEEEEECSSSSEEEE
T ss_pred             CCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC---CCCCeEEEEEECCCCCEEEE
Confidence            889999999999999999999999999954                  566666665   68889999999999999999


Q ss_pred             ecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCC
Q 036585          236 GSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       236 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~  289 (304)
                      ++.|+.|++||+++++++..+..|..+|.+++|+|++.+++++... +++|+++.
T Consensus       220 ~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          220 VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             EeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence            9999999999999999999999999999999999999999998555 99999866

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.2e-39  Score=261.21  Aligned_cols=270  Identities=13%  Similarity=0.128  Sum_probs=217.4

Q ss_pred             eeecce---eeEeecccC-cEEEEeeCCCeEEEEecCCcceeeeec--ccccceeEEEEcc-CCCeEEEEecCCCCCceE
Q 036585           13 SLELSE---EILQSMEVG-IYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTS-HPTTVIYSSKNGWDESLR   85 (304)
Q Consensus        13 ~~~~~~---~~i~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~   85 (304)
                      .+..|.   ..+.+++++ ++|++++.||.|++||+.+++....+.  +|...|.+++|+| +++.|++++.   |+.|+
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---d~~i~  144 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI---RGATT  144 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET---TTEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC---CCEEE
Confidence            444444   346788998 999999999999999999888777665  6999999999999 7789999998   99999


Q ss_pred             EEEccCceeeeeccc---ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecCCCe---EE
Q 036585           86 LLSLHDNKYSRYFKG---HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGL---VF  157 (304)
Q Consensus        86 vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~---~~  157 (304)
                      +||+.+ +.+..+..   |...|.+++|+|++++|++++.|+.|++||++ ++....+..+..  ..+.+++++.   +.
T Consensus       145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  222 (383)
T 3ei3_B          145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMAT  222 (383)
T ss_dssp             EEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEE
T ss_pred             EEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEE
Confidence            999986 44444443   44789999999999999999999999999994 555555544333  3567788763   44


Q ss_pred             EecCCCeEEEEecC------------CCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC----CC--
Q 036585          158 GYEKGPLDIFSVGG------------DISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV----SR--  218 (304)
Q Consensus       158 ~~~~~~~~~~~~~~------------~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~--  218 (304)
                      +..++.+++|++..            |...|.+++|+| ++++|++++.|+.|++||+++++....+..+..    +.  
T Consensus       223 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  302 (383)
T 3ei3_B          223 SSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTP  302 (383)
T ss_dssp             EETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCC
T ss_pred             EeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccc
Confidence            66778899998763            668899999999 999999999999999999999887777663211    11  


Q ss_pred             --------CcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec--cCCCCceEEeCCCCcEEEEecCc-eEEecc
Q 036585          219 --------NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS--FDTEPPVIKWAPGSLMFVTGSSE-LSFWIP  287 (304)
Q Consensus       219 --------~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~  287 (304)
                              ..+..++|+|++++  +++.|+.|++||+.+++++..+.+  |...+..++|+|++++|+++++. ++||++
T Consensus       303 ~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~  380 (383)
T 3ei3_B          303 IKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNR  380 (383)
T ss_dssp             CCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred             eEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEec
Confidence                    33445677777766  778999999999999999999876  56778888999999999999844 999998


Q ss_pred             CC
Q 036585          288 DL  289 (304)
Q Consensus       288 ~~  289 (304)
                      +.
T Consensus       381 ~~  382 (383)
T 3ei3_B          381 ED  382 (383)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-39  Score=265.44  Aligned_cols=262  Identities=16%  Similarity=0.181  Sum_probs=229.8

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ...+.+++++++|++++.||.|++|| .+++.+..+..|...|.+++|+|+++.|++++.   |+.|++||+.+++.+..
T Consensus       111 v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV---ENVTILWNVISGTVMQH  186 (425)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET---TCCEEEEETTTTEEEEE
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec---CCeEEEEECCCCcEEEE
Confidence            44578899999999999999999999 678888999999999999999999999999998   99999999999999888


Q ss_pred             ccccccc---------------EEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecCCC--eEEE
Q 036585           98 FKGHHDR---------------VVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQG--LVFG  158 (304)
Q Consensus        98 ~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~  158 (304)
                      +..+...               +.++.|+|++ .+++++.++.|++||+++++....+..+..  ..+.+++++  .+.+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  265 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA  265 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence            8877776               9999999975 688899999999999998877666654333  346677776  4556


Q ss_pred             ecCCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585          159 YEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  229 (304)
Q Consensus       159 ~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~  229 (304)
                      ..++.+.+|++.         .|...+.+++|+|++ .+++++.||.|++||+++++.+..+.   .+...+.+++|+|+
T Consensus       266 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~  341 (425)
T 1r5m_A          266 SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI---VDGVPIFAGRISQD  341 (425)
T ss_dssp             ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE---CTTCCEEEEEECTT
T ss_pred             cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc---cCCccEEEEEEcCC
Confidence            678889998764         477889999999999 99999999999999999999988888   67889999999999


Q ss_pred             CcEEEEecCCCcEEEEecCCCc--------------------eeeeeeccCC--CCceEEeCCCCcEEEEecCc--eEEe
Q 036585          230 GMFVISGSGDGSVHAWSVRSGK--------------------EVASWMSFDT--EPPVIKWAPGSLMFVTGSSE--LSFW  285 (304)
Q Consensus       230 ~~~l~~~~~dg~i~v~d~~~~~--------------------~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~d--~~iw  285 (304)
                      +++|++++.||.|++||+++++                    ++..+..|..  .|++++|+|++++|++++.|  +++|
T Consensus       342 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  421 (425)
T 1r5m_A          342 GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVV  421 (425)
T ss_dssp             SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEE
T ss_pred             CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEE
Confidence            9999999999999999999887                    7888888876  99999999999999999998  9999


Q ss_pred             ccC
Q 036585          286 IPD  288 (304)
Q Consensus       286 ~~~  288 (304)
                      +++
T Consensus       422 ~~~  424 (425)
T 1r5m_A          422 AIP  424 (425)
T ss_dssp             ECC
T ss_pred             eec
Confidence            875

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=269.22  Aligned_cols=251  Identities=13%  Similarity=0.245  Sum_probs=204.7

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcc-----------eeeeecccc------------cceeEEEEccCC--Ce
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAAT-----------CLKTINSKK------------YGVDLVCFTSHP--TT   71 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~--~~   71 (304)
                      ....+.++++|++||+|+.||.|+|||+.+++           ....+.+|.            ..|.+++|+|++  ..
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~  109 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQ  109 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcce
Confidence            34568899999999999999999999999876           577888998            889999999998  78


Q ss_pred             EEEEecCCCCCceEEEEccCceee---------------------------------------ee-cccccccEEEEEEc
Q 036585           72 VIYSSKNGWDESLRLLSLHDNKYS---------------------------------------RY-FKGHHDRVVLLSLC  111 (304)
Q Consensus        72 l~~~~~~~~d~~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~  111 (304)
                      |++++.   |+.|++||+.+++..                                       .. ..+|...|.+++|+
T Consensus       110 l~s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          110 FLLSTN---DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             EEEEEC---SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             EEEeCC---CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence            999988   999999999875432                                       12 35799999999999


Q ss_pred             CCCCEEEEcccCCeEEEEeCCcce-eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC-cEEE
Q 036585          112 SSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG-RLML  189 (304)
Q Consensus       112 ~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~  189 (304)
                      |++++|+++ .|+.|++||+++.. ....+.....                      .+.+|...|.+++|+|++ ++|+
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~----------------------~~~~~~~~v~~~~~~p~~~~~l~  243 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPA----------------------NMEELTEVITAAEFHPNSCNTFV  243 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCS----------------------SGGGCCCCEEEEEECSSCTTEEE
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccc----------------------cccccCcceEEEEECCCCCcEEE
Confidence            999999998 79999999998433 3222211100                      123678899999999998 9999


Q ss_pred             EeeCCCeEEEEEcCCCce----eEEEEeCCCCCC------------cceEEEEcCCCcEEEEecCCCcEEEEecCC-Cce
Q 036585          190 LTTMEGHIHVLDSFRGTL----LSTYNVKPVSRN------------STLEASFSPEGMFVISGSGDGSVHAWSVRS-GKE  252 (304)
Q Consensus       190 ~~~~dg~i~~~d~~~~~~----~~~~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~-~~~  252 (304)
                      +++.||.|++||+++++.    ...+.   .+..            .|.+++|+|++++|++++. +.|++||+++ +++
T Consensus       244 s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~  319 (447)
T 3dw8_B          244 YSSSKGTIRLCDMRASALCDRHSKLFE---EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP  319 (447)
T ss_dssp             EEETTSCEEEEETTTCSSSCTTCEEEC---CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC
T ss_pred             EEeCCCeEEEEECcCCccccceeeEec---cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc
Confidence            999999999999999886    56665   3444            8999999999999999998 9999999997 888


Q ss_pred             eeeeeccCCCC---------------ceEEeCCCCcEEEEecCc--eEEeccCCcccccccc
Q 036585          253 VASWMSFDTEP---------------PVIKWAPGSLMFVTGSSE--LSFWIPDLSKLGAYVG  297 (304)
Q Consensus       253 ~~~~~~~~~~i---------------~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~~~~~  297 (304)
                      +..+.+|...+               ..++|+|++++|++++.|  +++|++...+...+.+
T Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  381 (447)
T 3dw8_B          320 VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEA  381 (447)
T ss_dssp             SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEEC
T ss_pred             cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeee
Confidence            88888886422               249999999999999999  9999998766544433

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-40  Score=269.23  Aligned_cols=268  Identities=16%  Similarity=0.197  Sum_probs=224.6

Q ss_pred             eeeEeecccCc-EEEEe----------eCCCeEEEEecCCcc---eeeeecccccceeEEEEccCCCeEEEEecCCCCCc
Q 036585           18 EEILQSMEVGI-YLVTA----------SDDESIRLYDVTAAT---CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES   83 (304)
Q Consensus        18 ~~~i~~~~~~~-~l~~~----------~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~   83 (304)
                      ...+.++|+|+ +|+++          +.|+.|++||+.+++   .+..+ .|...|.+++|+|++++|++++.   |+.
T Consensus        15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~---dg~   90 (416)
T 2pm9_A           15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALD---NGS   90 (416)
T ss_dssp             SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEES---SSC
T ss_pred             cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEcc---CCe
Confidence            34578999987 99999          899999999999876   33333 57889999999999999999998   999


Q ss_pred             eEEEEccC----ceeeeecccccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcce------eeceE---EE--eccce
Q 036585           84 LRLLSLHD----NKYSRYFKGHHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEK------CQGLL---RV--QGRPA  147 (304)
Q Consensus        84 i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~~---~~--~~~~~  147 (304)
                      |++||+.+    .+.+..+.+|...|.+++|+|+ +++|++++.|+.|++||+++.+      ....+   ..  .....
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS  170 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence            99999987    4578888899999999999998 8999999999999999999876      22222   11  22345


Q ss_pred             eEecCC-C--eEEEecCCCeEEEEecC---------C------CCCceEEEEecCC-cEEEEeeCCC---eEEEEEcCCC
Q 036585          148 AAYDDQ-G--LVFGYEKGPLDIFSVGG---------D------ISDANVVKFSNDG-RLMLLTTMEG---HIHVLDSFRG  205 (304)
Q Consensus       148 ~~~~~~-~--~~~~~~~~~~~~~~~~~---------~------~~~v~~~~~~~~~-~~l~~~~~dg---~i~~~d~~~~  205 (304)
                      +.++++ +  .+.+..++.+.+|++..         +      ...+.+++|+|++ .++++++.++   .|++||++++
T Consensus       171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~  250 (416)
T 2pm9_A          171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA  250 (416)
T ss_dssp             EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred             EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence            777776 3  34456788899998653         2      6789999999997 6899999998   9999999986


Q ss_pred             -ceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCC-cEEEEecCc-
Q 036585          206 -TLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS-LMFVTGSSE-  281 (304)
Q Consensus       206 -~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~d-  281 (304)
                       +....+.  ..|...+.+++|+| ++++|++++.|+.|++||+++++++..+..|...|++++|+|++ .+|++++.| 
T Consensus       251 ~~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~  328 (416)
T 2pm9_A          251 NTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN  328 (416)
T ss_dssp             TSCSBCCC--SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS
T ss_pred             CCCcEEee--cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC
Confidence             4444332  14788999999999 99999999999999999999999999999999999999999999 899999998 


Q ss_pred             -eEEeccCCcc
Q 036585          282 -LSFWIPDLSK  291 (304)
Q Consensus       282 -~~iw~~~~~~  291 (304)
                       +++|+++...
T Consensus       329 ~i~iw~~~~~~  339 (416)
T 2pm9_A          329 KIEVQTLQNLT  339 (416)
T ss_dssp             EEEEEESCCCC
T ss_pred             cEEEEEccCCC
Confidence             9999986544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.3e-38  Score=281.24  Aligned_cols=273  Identities=17%  Similarity=0.217  Sum_probs=239.1

Q ss_pred             eeeeecce---eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           11 KVSLELSE---EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        11 ~~~~~~~~---~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ...+++|.   ..+.++|+|++|++++.||.|++||+.+++.+..+.+|..+|.+++|+|+++.|++++.   |+.|++|
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vw   82 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD---DFRIRVF   82 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET---TSEEEEE
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC---CCeEEEE
Confidence            34455554   45788999999999999999999999999999999999999999999999999999998   9999999


Q ss_pred             EccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcc-eeeceEEEecc--ceeEecC-CC--eEEEecC
Q 036585           88 SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQGR--PAAAYDD-QG--LVFGYEK  161 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~--~~~~~~~-~~--~~~~~~~  161 (304)
                      |+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||++++ .....+..+..  ..+.++| ++  .+.+..+
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  162 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999887 44444443333  3567777 44  4557778


Q ss_pred             CCeEEEEecC----------CCCCceEEEEec--CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585          162 GPLDIFSVGG----------DISDANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  229 (304)
Q Consensus       162 ~~~~~~~~~~----------~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~  229 (304)
                      +.+.+|++..          +...+..++|+|  ++.++++++.||.|++||+++++....+.   .|...+.+++|+|+
T Consensus       163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~  239 (814)
T 3mkq_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPT  239 (814)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSS
T ss_pred             CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEcCC
Confidence            8899998743          337899999999  99999999999999999999999988887   68899999999999


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCc--EEEEecCc-eEEeccCC
Q 036585          230 GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL--MFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       230 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~d-~~iw~~~~  289 (304)
                      +++|++++.||.|++||+.+++.+..+..|...+.+++|+|++.  ++++++.+ +.+|+...
T Consensus       240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence            99999999999999999999999999999999999999999987  57777766 88887643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-40  Score=276.86  Aligned_cols=235  Identities=14%  Similarity=0.094  Sum_probs=187.9

Q ss_pred             cCcEEEEeeCCCeEEEEecCCccee----eeecccccceeEEEEccC------CCeEEEEecCCCCCceEEEEccCcee-
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCL----KTINSKKYGVDLVCFTSH------PTTVIYSSKNGWDESLRLLSLHDNKY-   94 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~----~~~~~~~~~v~~~~~~~~------~~~l~~~~~~~~d~~i~vwd~~~~~~-   94 (304)
                      +++.+++++.|++|+|||+.+++..    ..+..|.+.|..++|+|+      +.+|++++.   |++|++||+.+++. 
T Consensus       172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~---DgtvrlWd~~~~~~~  248 (524)
T 2j04_B          172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQ---EGTINFLEIIDNATD  248 (524)
T ss_dssp             ----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEET---TSCEEEEECCCCSSS
T ss_pred             hhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEec---CCeEEEEEcCCCccc
Confidence            3445555778899999999877643    346677889999999997      578999998   99999999986642 


Q ss_pred             ----------eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585           95 ----------SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL  164 (304)
Q Consensus        95 ----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (304)
                                ...+.+|...|++++|+|++ .|++|+.||+|++||++++.....                         
T Consensus       249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~-------------------------  302 (524)
T 2j04_B          249 VHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSF-------------------------  302 (524)
T ss_dssp             SSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSE-------------------------
T ss_pred             cccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceE-------------------------
Confidence                      23567899999999999864 899999999999999987532211                         


Q ss_pred             EEEEecCCCCCceEE--EEecCC-cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCc
Q 036585          165 DIFSVGGDISDANVV--KFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS  241 (304)
Q Consensus       165 ~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  241 (304)
                         .+.+|...|.++  .|+|++ .+|++++.|++|++||+++++....+..+. ....+.+++|+|+++.+++++.|++
T Consensus       303 ---~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~-~~~~v~~v~fsp~~~~l~s~~~d~t  378 (524)
T 2j04_B          303 ---YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF-RGSNLVPVVYCPQIYSYIYSDGASS  378 (524)
T ss_dssp             ---EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC-SCCSCCCEEEETTTTEEEEECSSSE
T ss_pred             ---EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc-ccCcccceEeCCCcCeEEEeCCCCc
Confidence               112678899999  578888 899999999999999999988777665221 1235788999999999999999999


Q ss_pred             EEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcccc
Q 036585          242 VHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLG  293 (304)
Q Consensus       242 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~  293 (304)
                      |++||++++.++..+.+|.+.|++++|+|++++|++|+.|  +++|+...+.+.
T Consensus       379 v~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~  432 (524)
T 2j04_B          379 LRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLH  432 (524)
T ss_dssp             EEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTT
T ss_pred             EEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcc
Confidence            9999999999888899999999999999999999999999  999988655433

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-38  Score=260.87  Aligned_cols=235  Identities=20%  Similarity=0.270  Sum_probs=206.3

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc-Cceeeee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYSRY   97 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~-~~~~~~~   97 (304)
                      ..+.+++++++|++++.||.|++||+.+++.+..+.+|...|.+++|  ++..+++++.   |+.|++||+. ....+..
T Consensus       138 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---dg~i~i~d~~~~~~~~~~  212 (401)
T 4aez_A          138 ASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR---SGAIHHHDVRIANHQIGT  212 (401)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEET---TSEEEEEETTSSSCEEEE
T ss_pred             EEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcC---CCCEEEEecccCcceeeE
Confidence            45788999999999999999999999999999999999999999999  5679999998   9999999998 5667788


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      +.+|...|.+++|+|++++|++++.|+.|++||+++++....+                             ..|...|.
T Consensus       213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-----------------------------~~~~~~v~  263 (401)
T 4aez_A          213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK-----------------------------TNHNAAVK  263 (401)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE-----------------------------CCCSSCCC
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe-----------------------------cCCcceEE
Confidence            8899999999999999999999999999999999986654433                             35778899


Q ss_pred             EEEEecCCc-EEEEee--CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEE--ecCCCcEEEEecCCCce
Q 036585          178 VVKFSNDGR-LMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS--GSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       178 ~~~~~~~~~-~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~v~d~~~~~~  252 (304)
                      +++|+|++. ++++++  .|+.|++||+++++....+.    +...+.+++|+|+++++++  |+.||.|++||+.+++.
T Consensus       264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~  339 (401)
T 4aez_A          264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL  339 (401)
T ss_dssp             EEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE
T ss_pred             EEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc
Confidence            999999775 455544  79999999999999988887    5678999999999999999  55899999999998655


Q ss_pred             e--eeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          253 V--ASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       253 ~--~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      .  ..+.+|...|.+++|+|++++|++++.|  +++|++...+
T Consensus       340 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          340 TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            4  4467899999999999999999999998  9999986544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.9e-39  Score=259.06  Aligned_cols=257  Identities=13%  Similarity=0.157  Sum_probs=221.6

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcc---eeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEc-cCce
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAAT---CLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSL-HDNK   93 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~-~~~~   93 (304)
                      ..+.++|++++|++++.|+.|++|++.+++   ....+..|...|.+++|+|+++ .|++++.   |+.|++||+ .+++
T Consensus        15 ~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~   91 (342)
T 1yfq_A           15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV---QGEILKVDLIGSPS   91 (342)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET---TSCEEEECSSSSSS
T ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcC---CCeEEEEEeccCCc
Confidence            457788999999999999999999998877   3455668999999999999999 9999998   999999999 7775


Q ss_pred             eeeeccc--ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCc---------ceeeceEEEe-ccceeEecCCCeEEEecC
Q 036585           94 YSRYFKG--HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA---------EKCQGLLRVQ-GRPAAAYDDQGLVFGYEK  161 (304)
Q Consensus        94 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  161 (304)
                      . ..+.+  |...|.+++|+| ++++++++.|+.|++||+++         .+....+... ....+.+++++.+.+..+
T Consensus        92 ~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d  169 (342)
T 1yfq_A           92 F-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN  169 (342)
T ss_dssp             E-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEEST
T ss_pred             e-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCC
Confidence            4 66778  999999999999 99999999999999999987         6655554422 223567888888888888


Q ss_pred             CCeEEEEecC------------CCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCC------ceeEEEEeCCC------
Q 036585          162 GPLDIFSVGG------------DISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRG------TLLSTYNVKPV------  216 (304)
Q Consensus       162 ~~~~~~~~~~------------~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~------~~~~~~~~~~~------  216 (304)
                      +.+.+|++..            +...+.+++|+| +++++++++.||.|++|+++..      +....+..+..      
T Consensus       170 ~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (342)
T 1yfq_A          170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN  249 (342)
T ss_dssp             TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCS
T ss_pred             CeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccc
Confidence            8999998765            345789999999 9999999999999999999887      77777773211      


Q ss_pred             CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeecc-CCCCceEEeCCCCcEEEEecCce
Q 036585          217 SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF-DTEPPVIKWAPGSLMFVTGSSEL  282 (304)
Q Consensus       217 ~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~d~  282 (304)
                      +...|.+++|+|++++|++++.||.|++||+.+++++..+.+| ..+|++++  |++++|++++.|.
T Consensus       250 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             SCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred             cceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence            2349999999999999999999999999999999999999998 99999999  9999999999993

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.7e-39  Score=259.71  Aligned_cols=276  Identities=9%  Similarity=0.075  Sum_probs=209.8

Q ss_pred             eeeecceeeEeecccCcEEEEeeCCC-------eEEEEecCCcce----------eeeecccccceeEEEEccCCCeEEE
Q 036585           12 VSLELSEEILQSMEVGIYLVTASDDE-------SIRLYDVTAATC----------LKTINSKKYGVDLVCFTSHPTTVIY   74 (304)
Q Consensus        12 ~~~~~~~~~i~~~~~~~~l~~~~~d~-------~i~vw~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~   74 (304)
                      ..+.+.--.+.|+|+|++|++|+.+.       .|++|++.....          ...+..|...+.++++  +++.+++
T Consensus        11 ~~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~   88 (365)
T 4h5i_A           11 YNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILV   88 (365)
T ss_dssp             EECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEE
T ss_pred             cCCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEE
Confidence            33445566799999999999997543       599999875432          1245677777877766  5667777


Q ss_pred             EecC--------CCCCceEEEEccCceee----ee-----cccccccEEEEEEcCCCCEEE--EcccCCeEEEEeCCcce
Q 036585           75 SSKN--------GWDESLRLLSLHDNKYS----RY-----FKGHHDRVVLLSLCSSKDCFI--SGSLDRTVLLWDQRAEK  135 (304)
Q Consensus        75 ~~~~--------~~d~~i~vwd~~~~~~~----~~-----~~~~~~~v~~~~~~~~~~~l~--~~~~dg~i~iwd~~~~~  135 (304)
                      +...        +.|+.+++|++.+....    ..     ...+...+.+++|+|||++++  +++.|++|++||+++++
T Consensus        89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~  168 (365)
T 4h5i_A           89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT  168 (365)
T ss_dssp             ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred             EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence            6532        23788999998764321    11     123445689999999999876  45579999999999998


Q ss_pred             eeceEEEec-cceeEecCCCeEEE-ecCCCeEEEEe-----------cCCCCCceEEEEecCCcEEEEeeCCC----eEE
Q 036585          136 CQGLLRVQG-RPAAAYDDQGLVFG-YEKGPLDIFSV-----------GGDISDANVVKFSNDGRLMLLTTMEG----HIH  198 (304)
Q Consensus       136 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~  198 (304)
                      ....+.... ...++++|++.++. ..++.+.+|..           ..|...+.+++|+|+++++++++.++    .++
T Consensus       169 ~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~  248 (365)
T 4h5i_A          169 EKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLT  248 (365)
T ss_dssp             EEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEE
T ss_pred             EEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEe
Confidence            887776433 34678899886553 33444555432           24667799999999999999998887    688


Q ss_pred             EEEcCCCceeEE-EEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee-eccCCCCceEEeCCCCcEEE
Q 036585          199 VLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPGSLMFV  276 (304)
Q Consensus       199 ~~d~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~  276 (304)
                      +|++........ ......+...|++++|+|||++||+|+.|+.|+|||+++++++..+ .+|..+|++++|+|||++|+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la  328 (365)
T 4h5i_A          249 KISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA  328 (365)
T ss_dssp             EEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred             ecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE
Confidence            899877654321 1111267889999999999999999999999999999999998875 78999999999999999999


Q ss_pred             EecCc--eEEeccCC
Q 036585          277 TGSSE--LSFWIPDL  289 (304)
Q Consensus       277 s~~~d--~~iw~~~~  289 (304)
                      ++|.|  ++||++..
T Consensus       329 S~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          329 SVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEETTSEEEEEECCT
T ss_pred             EEeCCCeEEEEEcCC
Confidence            99999  99999853

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.5e-38  Score=293.84  Aligned_cols=284  Identities=14%  Similarity=0.242  Sum_probs=233.8

Q ss_pred             eeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           11 KVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        11 ~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ...+.+|...   +.++++|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++++++++.   |+.|++|
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~v~vw  684 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA---DKKVKIW  684 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEE
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeC---CCeEEEE
Confidence            3445556554   578999999999999999999999999999999999999999999999999999998   9999999


Q ss_pred             EccCceeeeecccccccEEEEEEcC--CCCEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCC--eEEEecC
Q 036585           88 SLHDNKYSRYFKGHHDRVVLLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQG--LVFGYEK  161 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~  161 (304)
                      |+.+++.+..+.+|...|.+++|+|  ++.++++++.|+.|++||+++++....+..+...  .+.+++++  .+.+..+
T Consensus       685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  764 (1249)
T 3sfz_A          685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD  764 (1249)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence            9999999999999999999999999  5568999999999999999998877665543332  45566665  3345556


Q ss_pred             CCeEEEEec----------------------------------------------------------------CCCCCce
Q 036585          162 GPLDIFSVG----------------------------------------------------------------GDISDAN  177 (304)
Q Consensus       162 ~~~~~~~~~----------------------------------------------------------------~~~~~v~  177 (304)
                      +.+.+|++.                                                                +|...+.
T Consensus       765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~  844 (1249)
T 3sfz_A          765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ  844 (1249)
T ss_dssp             SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred             CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence            667777542                                                                4567788


Q ss_pred             EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC---------
Q 036585          178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR---------  248 (304)
Q Consensus       178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~---------  248 (304)
                      +++|+|+++++++++.+|.|++||+.+++....+.   .|...|.+++|+|++++|++++.||.|++||+.         
T Consensus       845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~  921 (1249)
T 3sfz_A          845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR---GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIV  921 (1249)
T ss_dssp             EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSS
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC---CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeec
Confidence            99999999999999999999999999998887776   688888888888888888888888888888753         


Q ss_pred             ----------------------------------------------------------------------CCceeeeeec
Q 036585          249 ----------------------------------------------------------------------SGKEVASWMS  258 (304)
Q Consensus       249 ----------------------------------------------------------------------~~~~~~~~~~  258 (304)
                                                                                            +++....+.+
T Consensus       922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~ 1001 (1249)
T 3sfz_A          922 LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG 1001 (1249)
T ss_dssp             EEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC
T ss_pred             ccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc
Confidence                                                                                  2333444567


Q ss_pred             cCCCCceEEeCCCCcEEEEecCc--eEEeccCCccccccccCCC
Q 036585          259 FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLGAYVGRNR  300 (304)
Q Consensus       259 ~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~~~~~~~~  300 (304)
                      |...|++++|+|++++|++++.|  +++|++.........+|..
T Consensus      1002 h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1045 (1249)
T 3sfz_A         1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE 1045 (1249)
T ss_dssp             CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSS
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCC
Confidence            88888999999999999988888  8888887766555554443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-39  Score=270.51  Aligned_cols=239  Identities=14%  Similarity=0.084  Sum_probs=195.3

Q ss_pred             eeEeeccc------CcEEEEeeCCCeEEEEecCCcce-----------eeeecccccceeEEEEccCCCeEEEEecCCCC
Q 036585           19 EILQSMEV------GIYLVTASDDESIRLYDVTAATC-----------LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD   81 (304)
Q Consensus        19 ~~i~~~~~------~~~l~~~~~d~~i~vw~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d   81 (304)
                      ..+.|+|+      +.+||+++.||+|++||+.+++.           ...+.+|...|.+++|++++ .|++|+.   |
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~---D  286 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFK---N  286 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEET---T
T ss_pred             EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeC---C
Confidence            34778886      57999999999999999986542           24677899999999999864 8999998   9


Q ss_pred             CceEEEEccCce-eeeecccccccEEEE--EEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEE
Q 036585           82 ESLRLLSLHDNK-YSRYFKGHHDRVVLL--SLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF  157 (304)
Q Consensus        82 ~~i~vwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (304)
                      |+|++||+++++ +...+.+|...|.++  .|+|++ .+|++++.|++|++||+++++....+..+.             
T Consensus       287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~-------------  353 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF-------------  353 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC-------------
T ss_pred             CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc-------------
Confidence            999999999764 455688999999999  577887 899999999999999999887765554221             


Q ss_pred             EecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec
Q 036585          158 GYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                                    ....+.+++|+|+++.+++++.|++|++||++++.....+.   +|...|++++|+|++++|++|+
T Consensus       354 --------------~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~---gH~~~V~sva~Sp~g~~l~Sgs  416 (524)
T 2j04_B          354 --------------RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV---SRETTITAIGVSRLHPMVLAGS  416 (524)
T ss_dssp             --------------SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE---ECSSCEEEEECCSSCCBCEEEE
T ss_pred             --------------ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee---cCCCceEEEEeCCCCCeEEEEE
Confidence                          11247889999999999999999999999999998888777   6899999999999999999999


Q ss_pred             CCCcEEEEecCCC--------------------------------------------ceeeeeeccCCCCceEEeCCCCc
Q 036585          238 GDGSVHAWSVRSG--------------------------------------------KEVASWMSFDTEPPVIKWAPGSL  273 (304)
Q Consensus       238 ~dg~i~v~d~~~~--------------------------------------------~~~~~~~~~~~~i~~~~~~~~~~  273 (304)
                      .||+|++||+...                                            ..+..+.+|..+|.+++|+|++.
T Consensus       417 ~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~  496 (524)
T 2j04_B          417 ADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSA  496 (524)
T ss_dssp             TTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTT
T ss_pred             CCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCC
Confidence            9999999985321                                            11223456888999999999964


Q ss_pred             ---EEEEecCc--eEEeccCCcc
Q 036585          274 ---MFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       274 ---~l~s~~~d--~~iw~~~~~~  291 (304)
                         .+|+|+.+  ++||.++.+.
T Consensus       497 ~~~~lAsg~~~g~vrlw~l~~~~  519 (524)
T 2j04_B          497 GGKCYAFSNSAGLLTLEYLSLEH  519 (524)
T ss_dssp             TTTEEEEECTTSEEEEEECSCC-
T ss_pred             ccHHHHhhccCceEEEEEccccc
Confidence               99999998  9999988764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.9e-39  Score=260.79  Aligned_cols=249  Identities=15%  Similarity=0.251  Sum_probs=208.5

Q ss_pred             CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCE
Q 036585           37 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC  116 (304)
Q Consensus        37 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  116 (304)
                      ..+..|+..+..+.+++.+|.+.|.+++|+|++++|++++.   |++|++||+.+++....+..|...|.+++|+|++++
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~---D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~  122 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQ---DGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS  122 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEET---TSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSE
T ss_pred             ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCccceEEecCCCCEEEEEECCCCCE
Confidence            34566888888889999999999999999999999999998   999999999999999999999999999999999999


Q ss_pred             EEEcccCCeEEEEeCCccee-------eceEEEecc--ceeEecCC---CeEEEecCCCeEEEEec--------------
Q 036585          117 FISGSLDRTVLLWDQRAEKC-------QGLLRVQGR--PAAAYDDQ---GLVFGYEKGPLDIFSVG--------------  170 (304)
Q Consensus       117 l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~--------------  170 (304)
                      |++++.|+.+++||+.+...       ...+..+..  ..+.+.++   ..+.+..++.+++|++.              
T Consensus       123 las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~  202 (380)
T 3iz6_a          123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS  202 (380)
T ss_dssp             EEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSS
T ss_pred             EEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCC
Confidence            99999999999999875321       111222211  22344443   35667788899999753              


Q ss_pred             CCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcC-CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          171 GDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       171 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                      +|...|.+++|+| ++.+|++|+.||.|++||++ .++....+.   +|...|++++|+|++++|++|+.||.|++||++
T Consensus       203 ~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH---GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR  279 (380)
T ss_dssp             SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC---CCSSCCCEEEECTTSSEEEEECSSSCEEEEETT
T ss_pred             CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC---CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC
Confidence            5778899999977 88999999999999999998 446666666   789999999999999999999999999999999


Q ss_pred             CCceeeeeeccC-------CCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          249 SGKEVASWMSFD-------TEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       249 ~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      +++.+..+..+.       ..|++++|+|++++|++|+.|  +++|+....+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~  331 (380)
T 3iz6_a          280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE  331 (380)
T ss_dssp             TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred             CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence            998887775433       348999999999999999998  9999986543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.8e-38  Score=250.10  Aligned_cols=238  Identities=15%  Similarity=0.228  Sum_probs=206.7

Q ss_pred             cceeeeecccccceeEEEEccCC-CeEEEEecCCCCCceEEEEccC-----ceeeeecccccccEEEEEEcCCCCEEEEc
Q 036585           47 ATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHD-----NKYSRYFKGHHDRVVLLSLCSSKDCFISG  120 (304)
Q Consensus        47 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  120 (304)
                      ..+..++.+|.+.|.+++|+|++ +.|++++.   |++|++|++..     +.++..+.+|...|.+++|+|++++|+++
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~---D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~   83 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASR---DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA   83 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEET---TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecC---CccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence            34556789999999999999965 78999998   99999999864     34567888999999999999999999999


Q ss_pred             ccCCeEEEEeCCcceeeceEEEeccc--eeEecCCC--eEEEecCCCeEEEEec--------CCCCCceEEEEecC----
Q 036585          121 SLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQG--LVFGYEKGPLDIFSVG--------GDISDANVVKFSND----  184 (304)
Q Consensus       121 ~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~----  184 (304)
                      +.|++|++||+++++....+..+...  .+.+++++  .+.+..++.+++|++.        +|...+.+++|+|.    
T Consensus        84 s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC----
T ss_pred             eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCC
Confidence            99999999999999888777655443  45677776  4457778899999864        57788999999985    


Q ss_pred             --CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCC
Q 036585          185 --GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTE  262 (304)
Q Consensus       185 --~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~  262 (304)
                        +..+++++.|+.|++||+++.+....+.   +|...|.+++|+|++++|++++.||.|++||+.+++.+..+.. ..+
T Consensus       164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~  239 (319)
T 3frx_A          164 DDSVTIISAGNDKMVKAWNLNQFQIEADFI---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDE  239 (319)
T ss_dssp             --CCEEEEEETTSCEEEEETTTTEEEEEEC---CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSC
T ss_pred             CCccEEEEEeCCCEEEEEECCcchhheeec---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCc
Confidence              4489999999999999999998887777   7899999999999999999999999999999999998888874 468


Q ss_pred             CceEEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585          263 PPVIKWAPGSLMFVTGSSE-LSFWIPDLSK  291 (304)
Q Consensus       263 i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~  291 (304)
                      |.+++|+|++.+|++++.+ +++|+++...
T Consensus       240 v~~~~~sp~~~~la~~~~~~i~v~~~~~~~  269 (319)
T 3frx_A          240 VFSLAFSPNRYWLAAATATGIKVFSLDPQY  269 (319)
T ss_dssp             EEEEEECSSSSEEEEEETTEEEEEEETTEE
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEEeCcCe
Confidence            9999999999999999888 9999987654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.9e-37  Score=244.18  Aligned_cols=259  Identities=16%  Similarity=0.208  Sum_probs=214.2

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeec--ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ..+.|++++ +||+| .|++|+|||++++++++.+.  +|...|.+++|+|++++|++|+.   |+.|++||+++++.+.
T Consensus        29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~---Dg~v~iw~~~~~~~~~  103 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS---SAEVQLWDVQQQKRLR  103 (318)
T ss_dssp             BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEEEE
T ss_pred             eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC---CCcEEEeecCCceeEE
Confidence            568888876 77766 58999999999999887765  57778999999999999999998   9999999999999999


Q ss_pred             ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec-eEEEecc--ceeEecCCC--eEEEecCCCeEEEEecC
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQGR--PAAAYDDQG--LVFGYEKGPLDIFSVGG  171 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~  171 (304)
                      .+.+|...+.++.+  ++..+++++.++.+++|+........ .+..+..  ....+.+++  .+.+..++.+++|++..
T Consensus       104 ~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            99999998887665  56799999999999999987764432 2222222  234555555  44567788999998753


Q ss_pred             -------------CCCCceEEEEecCCcEE---EEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEE
Q 036585          172 -------------DISDANVVKFSNDGRLM---LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS  235 (304)
Q Consensus       172 -------------~~~~v~~~~~~~~~~~l---~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  235 (304)
                                   +...+..++++|++..+   ++++.++.|++||.+.........    +...+..+.|+|+++.+++
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~  257 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELIS  257 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEEETTTTEEEE
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc----ceeeeeeeeecccccceEE
Confidence                         45678889999876533   456788999999999888777765    6778999999999988776


Q ss_pred             e--cCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          236 G--SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       236 ~--~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      +  +.|+.|++||+++++++..+.+|.++|++++|+|++++|+||+.|  ++||++.
T Consensus       258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            5  479999999999999999999999999999999999999999999  9999873

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.5e-38  Score=270.51  Aligned_cols=263  Identities=16%  Similarity=0.214  Sum_probs=222.3

Q ss_pred             eeEeecccCc-EEEEeeCCCeEEEEecCCcceeeeeccccc---ceeEEEEccC-CCeEEEEecCCCCCceEEEEccCce
Q 036585           19 EILQSMEVGI-YLVTASDDESIRLYDVTAATCLKTINSKKY---GVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNK   93 (304)
Q Consensus        19 ~~i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~~~~~   93 (304)
                      ..+.++|+++ ++++++.|+.|++||+.+++.+..+..|..   .|.+++|+|+ ++++++++.   |+.|++||+.+++
T Consensus       164 ~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~  240 (615)
T 1pgu_A          164 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS---DRKISCFDGKSGE  240 (615)
T ss_dssp             EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---TCCEEEEETTTCC
T ss_pred             EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---CCeEEEEECCCCC
Confidence            3467888887 899999999999999999999999999998   9999999999 999999998   9999999999999


Q ss_pred             eeeec-c---cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec-------------------------
Q 036585           94 YSRYF-K---GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-------------------------  144 (304)
Q Consensus        94 ~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------  144 (304)
                      .+..+ .   .|...|.+++|+ ++++|++++.|+.|++||+++++....+....                         
T Consensus       241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g  319 (615)
T 1pgu_A          241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG  319 (615)
T ss_dssp             EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred             EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCC
Confidence            98888 5   799999999999 99999999999999999998776554433220                         


Q ss_pred             ----------cc---------------------------------------------eeEec---------CC-------
Q 036585          145 ----------RP---------------------------------------------AAAYD---------DQ-------  153 (304)
Q Consensus       145 ----------~~---------------------------------------------~~~~~---------~~-------  153 (304)
                                ..                                             .+.+.         .+       
T Consensus       320 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~  399 (615)
T 1pgu_A          320 TLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNG  399 (615)
T ss_dssp             CEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETT
T ss_pred             CEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEE
Confidence                      00                                             00000         00       


Q ss_pred             ----------------------------------------------------------CeEEEec-CCCeEEEEe-----
Q 036585          154 ----------------------------------------------------------GLVFGYE-KGPLDIFSV-----  169 (304)
Q Consensus       154 ----------------------------------------------------------~~~~~~~-~~~~~~~~~-----  169 (304)
                                                                                ..+.+.. ++.+.+|++     
T Consensus       400 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~  479 (615)
T 1pgu_A          400 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV  479 (615)
T ss_dssp             EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred             cccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccc
Confidence                                                                      0111222 566666654     


Q ss_pred             -----cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC-CCCcceEEEEcC----------CCcEE
Q 036585          170 -----GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-SRNSTLEASFSP----------EGMFV  233 (304)
Q Consensus       170 -----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~i~~~~~s~----------~~~~l  233 (304)
                           ..|...|.+++|+|++++|++++.||.|++||+.+++.+..+.   . |...|++++|+|          ++++|
T Consensus       480 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~~~~~sp~~~~~~~~~~~~~~l  556 (615)
T 1pgu_A          480 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW---AFRTSKINAISWKPAEKGANEEEIEEDLV  556 (615)
T ss_dssp             EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS---CCCSSCEEEEEECCCC------CCSCCEE
T ss_pred             cccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEee---cCCCCceeEEEEcCccccccccccCCCEE
Confidence                 3467889999999999999999999999999999998877665   4 889999999999          99999


Q ss_pred             EEecCCCcEEEEecCCC-ceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          234 ISGSGDGSVHAWSVRSG-KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       234 ~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      ++++.||.|++||+.++ +++..+.+|...|++++|+|+++ |++++.|  +++|+++.
T Consensus       557 ~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          557 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             EEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            99999999999999987 78888999999999999999999 9999998  99999865

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.3e-38  Score=263.38  Aligned_cols=270  Identities=14%  Similarity=0.134  Sum_probs=207.1

Q ss_pred             eeEeecc-cCcEEEEeeCCCeEEEEecCCcce--eeeecccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEccCcee
Q 036585           19 EILQSME-VGIYLVTASDDESIRLYDVTAATC--LKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        19 ~~i~~~~-~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      ..+.|+| ++++||+|+.||.|+|||+.+++.  ...+.+|.+.|.+++|+| ++.+|++++.   |++|++||++++..
T Consensus       123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~---D~~v~iwd~~~~~~  199 (435)
T 4e54_B          123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM---EGTTRLQDFKGNIL  199 (435)
T ss_dssp             EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS---SSCEEEEETTSCEE
T ss_pred             EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC---CCEEEEeeccCCce
Confidence            4578888 467999999999999999987654  445668999999999998 6889999998   99999999987654


Q ss_pred             eeecc--cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec--cceeEecCCC---eEEEecCCCeEEE
Q 036585           95 SRYFK--GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--RPAAAYDDQG---LVFGYEKGPLDIF  167 (304)
Q Consensus        95 ~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~  167 (304)
                      .....  .+...+.+++|+|++++|++|+.||.|++||++.. ....+..+.  ...+.+++++   .+.+..++.+++|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iw  278 (435)
T 4e54_B          200 RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW  278 (435)
T ss_dssp             EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEE
T ss_pred             eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEEEecCcceeeEE
Confidence            33333  23446789999999999999999999999999754 333343332  2346677765   2346678999999


Q ss_pred             Eec------------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC---CCCcceEEEEcCCCcE
Q 036585          168 SVG------------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---SRNSTLEASFSPEGMF  232 (304)
Q Consensus       168 ~~~------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~  232 (304)
                      ++.            +|...|++++|+|+|++|++++.||.|++||+++++....+..+..   ....+....|+|++.+
T Consensus       279 d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (435)
T 4e54_B          279 DLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNL  358 (435)
T ss_dssp             ETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSC
T ss_pred             ecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCE
Confidence            864            3677899999999999999999999999999999887766652211   1112334566776666


Q ss_pred             EEEec------------CCCcEEEEecCCCceeeee-eccCCCCceE-EeCCCCcEEEEecCc-eEEeccCCccc
Q 036585          233 VISGS------------GDGSVHAWSVRSGKEVASW-MSFDTEPPVI-KWAPGSLMFVTGSSE-LSFWIPDLSKL  292 (304)
Q Consensus       233 l~~~~------------~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~-~~~~~~~~l~s~~~d-~~iw~~~~~~~  292 (304)
                      ++++.            .++.|++||..+++.+..+ .+|...|.++ +|+|+|++|++|+.+ ++||+++..+.
T Consensus       359 ~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~  433 (435)
T 4e54_B          359 IVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEART  433 (435)
T ss_dssp             EEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC----
T ss_pred             EEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCee
Confidence            66553            3457999999999988776 4688889888 699999999999877 99999876554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=9.3e-38  Score=249.64  Aligned_cols=267  Identities=13%  Similarity=0.142  Sum_probs=221.8

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ...+.++|+|++++++..++.+.+|............+|...|.+++|+|+++++++++    |+.|++||+.+++....
T Consensus        12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----dg~i~iw~~~~~~~~~~   87 (337)
T 1gxr_A           12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG----KGCVKVWDISHPGNKSP   87 (337)
T ss_dssp             CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC----BSEEEEEETTSTTCCSC
T ss_pred             eeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC----CCeEEEEECCCCCceee
Confidence            34588999999999998888777777665555555557999999999999999999987    89999999987754333


Q ss_pred             c---c--cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec--eEEEecc--ceeEecCCC--eEEEecCCCeEE
Q 036585           98 F---K--GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG--LLRVQGR--PAAAYDDQG--LVFGYEKGPLDI  166 (304)
Q Consensus        98 ~---~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~  166 (304)
                      +   .  .|...|.+++|+|+++++++++.|+.|++||+++++...  .+..+..  ..+.+++++  .+.+..++.+.+
T Consensus        88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~  167 (337)
T 1gxr_A           88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV  167 (337)
T ss_dssp             SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence            2   2  688999999999999999999999999999999877333  3332222  246677776  344667788888


Q ss_pred             EEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec
Q 036585          167 FSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       167 ~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                      |++.         .|...+.+++|+|++++|++++.||.|++||+++++....+.    +...+.+++|+|++++|++++
T Consensus       168 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~  243 (337)
T 1gxr_A          168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEE
T ss_pred             EeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECCCCCEEEEEc
Confidence            8754         477899999999999999999999999999999999888876    678899999999999999999


Q ss_pred             CCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcccc
Q 036585          238 GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLG  293 (304)
Q Consensus       238 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~  293 (304)
                      .|+.|++||+++++. ..+..|..+|.+++|+|++++|++++.|  +++|+++..+..
T Consensus       244 ~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          244 ESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             TTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence            999999999988775 4567899999999999999999999988  999998765544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.9e-38  Score=259.99  Aligned_cols=247  Identities=12%  Similarity=0.139  Sum_probs=207.5

Q ss_pred             eeeccee---eEeecc-cCcEEEEeeCCCeEEEEecCCc-------ceeeeecccccceeEEEEccCC-CeEEEEecCCC
Q 036585           13 SLELSEE---ILQSME-VGIYLVTASDDESIRLYDVTAA-------TCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGW   80 (304)
Q Consensus        13 ~~~~~~~---~i~~~~-~~~~l~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~   80 (304)
                      .+.+|..   .+.++| ++++|++++.||.|++||+.++       +.+..+.+|...|.+++|+|++ ..|++++.   
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~---  152 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC---  152 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET---
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC---
Confidence            3445544   467888 8999999999999999999987       6678899999999999999998 68889988   


Q ss_pred             CCceEEEEccCceeeeec--ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585           81 DESLRLLSLHDNKYSRYF--KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG  158 (304)
Q Consensus        81 d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (304)
                      |+.|++||+.+++.+..+  ..|...|.+++|+|++++|++++.|+.|++||+++++....+.                 
T Consensus       153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------------  215 (402)
T 2aq5_A          153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD-----------------  215 (402)
T ss_dssp             TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-----------------
T ss_pred             CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec-----------------
Confidence            999999999999999888  7899999999999999999999999999999999887655542                 


Q ss_pred             ecCCCeEEEEecCCCC-CceEEEEecCCcEEEEe---eCCCeEEEEEcCCCce-eEEEEeCCCCCCcceEEEEcCCCcEE
Q 036585          159 YEKGPLDIFSVGGDIS-DANVVKFSNDGRLMLLT---TMEGHIHVLDSFRGTL-LSTYNVKPVSRNSTLEASFSPEGMFV  233 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~---~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l  233 (304)
                                 ..|.. .+..+.|+|++++|+++   +.|+.|++||+++++. ......  .+...+.+++|+|++++|
T Consensus       216 -----------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l  282 (402)
T 2aq5_A          216 -----------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL--DTSSGVLLPFFDPDTNIV  282 (402)
T ss_dssp             -----------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC--CCCSSCEEEEEETTTTEE
T ss_pred             -----------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec--cCCCceeEEEEcCCCCEE
Confidence                       13434 38899999999999999   7899999999988765 333332  366789999999999998


Q ss_pred             E-EecCCCcEEEEecCCCce-eeeeec--cCCCCceEEeCCCCcEEEEecCceEEeccCCccc
Q 036585          234 I-SGSGDGSVHAWSVRSGKE-VASWMS--FDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKL  292 (304)
Q Consensus       234 ~-~~~~dg~i~v~d~~~~~~-~~~~~~--~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~~  292 (304)
                      + +++.||.|++||+.++++ +..+..  |..+|.+++|+|++.++++++..+++|++....+
T Consensus       283 ~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          283 YLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERKC  345 (402)
T ss_dssp             EEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEETTEE
T ss_pred             EEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCCCcE
Confidence            6 566799999999998874 555544  4589999999999999887666699999876554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.1e-38  Score=260.33  Aligned_cols=258  Identities=13%  Similarity=0.059  Sum_probs=185.6

Q ss_pred             ecccCcEEEEeeCCCeEEEEecCCcce-----eeeecccccceeEEEEcc--------CCCeEEEEecCCCCCceEEEEc
Q 036585           23 SMEVGIYLVTASDDESIRLYDVTAATC-----LKTINSKKYGVDLVCFTS--------HPTTVIYSSKNGWDESLRLLSL   89 (304)
Q Consensus        23 ~~~~~~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~~~~d~~i~vwd~   89 (304)
                      +.+++++|++++.|++|++||.++++.     +..+.+|.+.|.+++|+|        ++++|++++.   |++|+|||+
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~---D~tv~~Wd~  173 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD---DCTLIIWRL  173 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET---TSEEEEEEE
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC---CCeEEEEEC
Confidence            445678999999999999999988754     345789999999999998        7889999998   999999999


Q ss_pred             cCceeeeecccccccEEEEEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585           90 HDNKYSRYFKGHHDRVVLLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS  168 (304)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
                      .++.++..+..|..+|.+++|+|++. +|++++.|++|++||+++++............    .................
T Consensus       174 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~----~~~~~s~~~~~~~~~~~  249 (393)
T 4gq1_A          174 TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK----NPWLLTLNTLPLVNTCH  249 (393)
T ss_dssp             ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS----CCCSEEEESGGGC----
T ss_pred             CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc----cceEEecccccceeeee
Confidence            99888888888999999999999874 89999999999999999887654433211110    00001111111122233


Q ss_pred             ecCCCCCceEEEEe-cCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC---------------CCCcceEEEEcC--CC
Q 036585          169 VGGDISDANVVKFS-NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---------------SRNSTLEASFSP--EG  230 (304)
Q Consensus       169 ~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---------------~~~~i~~~~~s~--~~  230 (304)
                      ..+|...+.++.|+ |+++.+++++.|+++++||+..++....+.....               .........|+|  ++
T Consensus       250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (393)
T 4gq1_A          250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD  329 (393)
T ss_dssp             --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred             cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence            34678889999987 7999999999999999999988766555431100               011122233444  45


Q ss_pred             cEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEecc
Q 036585          231 MFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIP  287 (304)
Q Consensus       231 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~  287 (304)
                      .++++|+.||.|++||+.+++.+..+..|..+|++++|+|||++||+++.+ +.+|.+
T Consensus       330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL  387 (393)
T 4gq1_A          330 YFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRL  387 (393)
T ss_dssp             EEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            577888999999999999999988888899999999999999999999999 666644

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-37  Score=246.39  Aligned_cols=218  Identities=21%  Similarity=0.369  Sum_probs=194.8

Q ss_pred             cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeE
Q 036585           47 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTV  126 (304)
Q Consensus        47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  126 (304)
                      .....++.+|...|.+++|+|++++|++++.   |+.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   89 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL   89 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeC---CCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence            4556778899999999999999999999998   9999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCc
Q 036585          127 LLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  206 (304)
Q Consensus       127 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  206 (304)
                      ++||+++++....+.                             +|...|.+++|+|++++|++++.||.|++||+++++
T Consensus        90 ~vwd~~~~~~~~~~~-----------------------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  140 (312)
T 4ery_A           90 KIWDVSSGKCLKTLK-----------------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK  140 (312)
T ss_dssp             EEEETTTCCEEEEEE-----------------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEECCCCcEEEEEc-----------------------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE
Confidence            999999887655443                             577889999999999999999999999999999999


Q ss_pred             eeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee-eccCCCCceEEeCCCCcEEEEecCc--eE
Q 036585          207 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPGSLMFVTGSSE--LS  283 (304)
Q Consensus       207 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~d--~~  283 (304)
                      ....+.   .|..++.+++|+|++++|++++.||.|++||+++++.+..+ ..+..++..++|+|++++|++++.|  ++
T Consensus       141 ~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  217 (312)
T 4ery_A          141 CLKTLP---AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK  217 (312)
T ss_dssp             EEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             EEEEec---CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence            888877   68889999999999999999999999999999999887766 4466789999999999999999988  99


Q ss_pred             EeccCCcc-ccccccCC
Q 036585          284 FWIPDLSK-LGAYVGRN  299 (304)
Q Consensus       284 iw~~~~~~-~~~~~~~~  299 (304)
                      +|++...+ +..+.+|.
T Consensus       218 iwd~~~~~~~~~~~~~~  234 (312)
T 4ery_A          218 LWDYSKGKCLKTYTGHK  234 (312)
T ss_dssp             EEETTTTEEEEEECSSC
T ss_pred             EEECCCCcEEEEEEecC
Confidence            99986544 44555544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.1e-37  Score=249.16  Aligned_cols=248  Identities=14%  Similarity=0.222  Sum_probs=208.4

Q ss_pred             ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEE
Q 036585           48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL  127 (304)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  127 (304)
                      +...++.+|...|.+++|+|++++|++++.   |+.|++||..+++....+..|...|.+++|+|++.++++++.|+.++
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~---Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~  131 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQ---DGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS  131 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeC---CCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence            556788999999999999999999999998   99999999999988888888999999999999999999999999999


Q ss_pred             EEeCCcce------eeceEEEecc--ceeEecCCC--eEEEecCCCeEEEEec---------CCCCCceEEEEec--CCc
Q 036585          128 LWDQRAEK------CQGLLRVQGR--PAAAYDDQG--LVFGYEKGPLDIFSVG---------GDISDANVVKFSN--DGR  186 (304)
Q Consensus       128 iwd~~~~~------~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~--~~~  186 (304)
                      +|++....      ....+..+..  ..+.+.+++  .+.+..++.+++|++.         +|...|.+++|+|  +++
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred             EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence            99986432      1222332322  245666665  4557778888888754         5788899999987  578


Q ss_pred             EEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeecc--CCCCc
Q 036585          187 LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF--DTEPP  264 (304)
Q Consensus       187 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~i~  264 (304)
                      +|++|+.||.|++||+++++.+..+.   .|...|++++|+|++++|++++.|+.|++||+++++.+..+..+  ...+.
T Consensus       212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~  288 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRSGQCVQAFE---THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGAS  288 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEec---CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccccee
Confidence            99999999999999999999888887   68899999999999999999999999999999988777666433  34688


Q ss_pred             eEEeCCCCcEEEEecCc--eEEeccC-CccccccccCCCC
Q 036585          265 VIKWAPGSLMFVTGSSE--LSFWIPD-LSKLGAYVGRNRG  301 (304)
Q Consensus       265 ~~~~~~~~~~l~s~~~d--~~iw~~~-~~~~~~~~~~~~g  301 (304)
                      +++|+|++++|++++.|  +++|++. ...+..+.+|...
T Consensus       289 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~  328 (354)
T 2pbi_B          289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR  328 (354)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC
T ss_pred             EEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCc
Confidence            99999999999999998  9999984 4455666676654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.6e-37  Score=245.89  Aligned_cols=236  Identities=15%  Similarity=0.221  Sum_probs=198.6

Q ss_pred             ceeeeecccccceeEEEE-----cc-CCCeEEEEecCCCCCceEEEEccCc-------eeeeecccccccEEEEEEcCCC
Q 036585           48 TCLKTINSKKYGVDLVCF-----TS-HPTTVIYSSKNGWDESLRLLSLHDN-------KYSRYFKGHHDRVVLLSLCSSK  114 (304)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~-----~~-~~~~l~~~~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~  114 (304)
                      ++...+.+|...|.+++|     ++ ++++|++++.   |++|++||+.+.       .+...+.+|...|.+++|+|++
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~---D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSR---DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEET---TSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcC---CCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence            456778999999999999     76 8999999998   999999999753       4566788999999999999999


Q ss_pred             CEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCC--eEEEecCCCeEEEEec-----------CCCCCceEE
Q 036585          115 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQG--LVFGYEKGPLDIFSVG-----------GDISDANVV  179 (304)
Q Consensus       115 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~-----------~~~~~v~~~  179 (304)
                      .++++++.|++|++||+++++....+..+...  .+.+++++  .+.+..++.+++|++.           .|...+.++
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~  168 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV  168 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEE
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeee
Confidence            99999999999999999999887777654433  56788877  4446778999999874           467789999


Q ss_pred             EEecCC----------cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585          180 KFSNDG----------RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       180 ~~~~~~----------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~  249 (304)
                      +|+|++          .+|++++.||.|++|| .+.+....+.   .|...|.+++|+|++++|++|+.||.|++||+.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~---~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFK---AHESNVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             EECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEE---CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             eeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEc---CccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            999987          7899999999999999 4556666666   6889999999999999999999999999999954


Q ss_pred             Cc-eeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585          250 GK-EVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSK  291 (304)
Q Consensus       250 ~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~  291 (304)
                      .. +...+ .+...|.+++|+|++.++++++.+ +++|++...+
T Consensus       245 ~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          245 LTYPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQS  287 (343)
T ss_dssp             CSSCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCC
T ss_pred             Ccccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCC
Confidence            43 33333 356679999999999999877766 9999986543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.8e-38  Score=252.17  Aligned_cols=211  Identities=13%  Similarity=0.229  Sum_probs=181.4

Q ss_pred             cceeeeeccccc-ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee---eecccccccEEEEEEcCCCCEEEEccc
Q 036585           47 ATCLKTINSKKY-GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS---RYFKGHHDRVVLLSLCSSKDCFISGSL  122 (304)
Q Consensus        47 ~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~  122 (304)
                      .+++.++.+|.. .|.+++|+|++++|++++.   |+.|++||+.+++..   ....+|...|.+++|+|++++|++++.
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~---D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~   81 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGG---DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF   81 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEET---TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcC---CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC
Confidence            456778889987 8999999999999999998   999999999887643   223679999999999999999999999


Q ss_pred             CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEc
Q 036585          123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDS  202 (304)
Q Consensus       123 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  202 (304)
                      |+++++||+..+....                           +..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus        82 D~~v~iw~~~~~~~~~---------------------------~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~  134 (345)
T 3fm0_A           82 DATTCIWKKNQDDFEC---------------------------VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV  134 (345)
T ss_dssp             TSCEEEEEECCC-EEE---------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CCcEEEEEccCCCeEE---------------------------EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEEC
Confidence            9999999987653221                           1223478899999999999999999999999999999


Q ss_pred             CCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc--eeeeeeccCCCCceEEeCCCCcEEEEecC
Q 036585          203 FRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK--EVASWMSFDTEPPVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  280 (304)
                      +++...........|...|.+++|+|++++|++++.|+.|++||+++++  +...+.+|...|++++|+|++++|++++.
T Consensus       135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence            8775443333333688999999999999999999999999999998775  35678899999999999999999999999


Q ss_pred             c--eEEecc
Q 036585          281 E--LSFWIP  287 (304)
Q Consensus       281 d--~~iw~~  287 (304)
                      |  ++||+.
T Consensus       215 D~~v~iW~~  223 (345)
T 3fm0_A          215 DRTVRIWRQ  223 (345)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEecc
Confidence            9  999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-38  Score=277.01  Aligned_cols=244  Identities=14%  Similarity=0.182  Sum_probs=208.1

Q ss_pred             eeecceee---EeecccCcEEEEeeCCCeEEEEecC--CcceeeeecccccceeEEEEccC--CCeEEEEecCCCCCceE
Q 036585           13 SLELSEEI---LQSMEVGIYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFTSH--PTTVIYSSKNGWDESLR   85 (304)
Q Consensus        13 ~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~d~~i~   85 (304)
                      .+.+|.+.   +.++++|++|++|+.||.|++||+.  +++.+..+.+|..+|.+++|+|+  ++.+++++.   ||.|+
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~---Dg~I~   80 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY---DGKVL   80 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET---TSCEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC---CCeEE
Confidence            34555544   5677899999999999999999998  56778889999999999999988  999999998   99999


Q ss_pred             EEEccCce--eeeecccccccEEEEEEcCC--CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecC
Q 036585           86 LLSLHDNK--YSRYFKGHHDRVVLLSLCSS--KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEK  161 (304)
Q Consensus        86 vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (304)
                      +||+.+++  .+..+.+|...|.+++|+|+  ++++++++.||.|++||++++........                   
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~-------------------  141 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-------------------  141 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE-------------------
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe-------------------
Confidence            99999986  67778889999999999999  99999999999999999988754333321                   


Q ss_pred             CCeEEEEecCCCCCceEEEEec-------------CCcEEEEeeCCCeEEEEEcCCCc----eeEEEEeCCCCCCcceEE
Q 036585          162 GPLDIFSVGGDISDANVVKFSN-------------DGRLMLLTTMEGHIHVLDSFRGT----LLSTYNVKPVSRNSTLEA  224 (304)
Q Consensus       162 ~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~~~~i~~~  224 (304)
                              .+|...|.+++|+|             ++.++++++.||.|++||++++.    ....+.   .|...|+++
T Consensus       142 --------~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~---~h~~~V~~l  210 (753)
T 3jro_A          142 --------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSDWVRDV  210 (753)
T ss_dssp             --------ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC---CCSSCEEEE
T ss_pred             --------ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec---CCCCcEEEE
Confidence                    25778899999999             58999999999999999998874    333333   688999999


Q ss_pred             EEcCC---CcEEEEecCCCcEEEEecCCCc-----eeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC
Q 036585          225 SFSPE---GMFVISGSGDGSVHAWSVRSGK-----EVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       225 ~~s~~---~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                      +|+|+   +++|++++.||.|++||+++++     .......|...|++++|+|++++|++++.|  +++|+++.
T Consensus       211 ~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          211 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            99999   9999999999999999998864     334445688999999999999999999998  89998874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.3e-37  Score=256.91  Aligned_cols=242  Identities=13%  Similarity=0.246  Sum_probs=205.0

Q ss_pred             eeEeeccc-CcEEEEeeCCCeEEEEecCC----------cceeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEE
Q 036585           19 EILQSMEV-GIYLVTASDDESIRLYDVTA----------ATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRL   86 (304)
Q Consensus        19 ~~i~~~~~-~~~l~~~~~d~~i~vw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~v   86 (304)
                      ..+.++|+ +++|++++.||.|++|++.+          .+.+..+.+|...+.+++|+|++. .|++++.   ||.|++
T Consensus       132 ~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~v  208 (430)
T 2xyi_A          132 NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD---DHTICL  208 (430)
T ss_dssp             SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT---TSCEEE
T ss_pred             EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC---CCeEEE
Confidence            44778886 78999999999999999986          577888899999999999999998 8899988   999999


Q ss_pred             EEccCcee-------eeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585           87 LSLHDNKY-------SRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG  158 (304)
Q Consensus        87 wd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (304)
                      |++.++..       ...+.+|...|.+++|+| ++.+|++++.|+.|++||+++.......                  
T Consensus       209 wd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~------------------  270 (430)
T 2xyi_A          209 WDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS------------------  270 (430)
T ss_dssp             EETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCS------------------
T ss_pred             EeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcce------------------
Confidence            99987322       455668999999999999 7789999999999999999976321111                  


Q ss_pred             ecCCCeEEEEecCCCCCceEEEEecCCc-EEEEeeCCCeEEEEEcCC-CceeEEEEeCCCCCCcceEEEEcCCCc-EEEE
Q 036585          159 YEKGPLDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGM-FVIS  235 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~  235 (304)
                              ..+..|...|++++|+|+++ ++++|+.||.|++||+++ .+.+..+.   .|...|++++|+|+++ +|++
T Consensus       271 --------~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~---~h~~~v~~i~~sp~~~~~l~s  339 (430)
T 2xyi_A          271 --------HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE---SHKDEIFQVQWSPHNETILAS  339 (430)
T ss_dssp             --------EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE---CCSSCEEEEEECSSCTTEEEE
T ss_pred             --------eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee---cCCCCEEEEEECCCCCCEEEE
Confidence                    11125778899999999987 688999999999999998 56677777   6889999999999985 6899


Q ss_pred             ecCCCcEEEEecCC--------------CceeeeeeccCCCCceEEeCCCCc-EEEEecCc--eEEeccCCccc
Q 036585          236 GSGDGSVHAWSVRS--------------GKEVASWMSFDTEPPVIKWAPGSL-MFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       236 ~~~dg~i~v~d~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d--~~iw~~~~~~~  292 (304)
                      ++.|+.|++||+..              .+.+..+.+|...|++++|+|+++ +|++++.|  ++||+++...+
T Consensus       340 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~  413 (430)
T 2xyi_A          340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY  413 (430)
T ss_dssp             EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred             EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence            99999999999986              356677788999999999999999 88999888  89999876544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.6e-38  Score=252.34  Aligned_cols=226  Identities=17%  Similarity=0.238  Sum_probs=182.2

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceee----eecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLK----TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      ..+.|+|++++ ++++.||+|+|||+.+++...    ...+|...|.+++|+|++++|++++.   |+.|++||+++++.
T Consensus        98 ~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~---dg~v~iwd~~~~~~  173 (357)
T 4g56_B           98 TDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK---DFSVKVWDLSQKAV  173 (357)
T ss_dssp             EEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET---TSCEEEEETTTTEE
T ss_pred             EEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC---CCeEEEEECCCCcE
Confidence            34778888765 567789999999998876543    33478899999999999999999998   99999999999999


Q ss_pred             eeecccccccEEEEEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEEec----cceeEecCCC---eEEEecCCCeEE
Q 036585           95 SRYFKGHHDRVVLLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQG----RPAAAYDDQG---LVFGYEKGPLDI  166 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~  166 (304)
                      +..+.+|...|.+++|+|++. ++++++.|+.|++||+++++....+....    ...+.++|++   .+.+..++.+++
T Consensus       174 ~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~  253 (357)
T 4g56_B          174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL  253 (357)
T ss_dssp             EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred             EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeE
Confidence            999999999999999999875 78999999999999999888766554322    2346677653   334677889999


Q ss_pred             EEec---------CCCCCceEEEEecCC-cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEE
Q 036585          167 FSVG---------GDISDANVVKFSNDG-RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVIS  235 (304)
Q Consensus       167 ~~~~---------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~  235 (304)
                      |++.         +|...|++++|+|++ ++|++++.||+|++||+++++.+..+    .|...|++++|+| ++++|++
T Consensus       254 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~----~H~~~V~~vafsP~d~~~l~s  329 (357)
T 4g56_B          254 VNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL----SHRDFVTGVAWSPLDHSKFTT  329 (357)
T ss_dssp             EESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC----CCSSCEEEEEECSSSTTEEEE
T ss_pred             EECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC----CCCCCEEEEEEeCCCCCEEEE
Confidence            9764         477899999999987 57899999999999999998877654    4889999999999 8999999


Q ss_pred             ecCCCcEEEEecCCCce
Q 036585          236 GSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       236 ~~~dg~i~v~d~~~~~~  252 (304)
                      ++.||.|++||+.+...
T Consensus       330 ~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          330 VGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             EETTSCEEEEECC----
T ss_pred             EcCCCeEEEEECCCCCc
Confidence            99999999999976433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.8e-37  Score=256.64  Aligned_cols=256  Identities=15%  Similarity=0.278  Sum_probs=217.5

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      +..+..++++|++|+.||.|++||+.+++.+..+.+|...|.+++|  +++.+++++.   ||.|++||+.+++.+..+.
T Consensus       136 v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~  210 (435)
T 1p22_A          136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS---DSTVRVWDVNTGEMLNTLI  210 (435)
T ss_dssp             EEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEET---TSCEEEEESSSCCEEEEEC
T ss_pred             EEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcC---CCeEEEEECCCCcEEEEEc
Confidence            4566678999999999999999999999999999999999999999  7889999998   9999999999999999999


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece---EEEeccc--eeEecCCCeEEEecCCCeEEEEec----
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL---LRVQGRP--AAAYDDQGLVFGYEKGPLDIFSVG----  170 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----  170 (304)
                      +|...|.+++|++  ..+++++.||.|++||++++.....   +..+...  .+.++.+..+.+..++.+.+|++.    
T Consensus       211 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  288 (435)
T 1p22_A          211 HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF  288 (435)
T ss_dssp             CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcE
Confidence            9999999999974  5999999999999999988765532   2222222  345555556667778888888754    


Q ss_pred             -----CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEE
Q 036585          171 -----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAW  245 (304)
Q Consensus       171 -----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~  245 (304)
                           +|...+.++.+  +++++++|+.||.|++||+++++.+..+.   .|...+.+++|  ++++|++|+.||.|++|
T Consensus       289 ~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~--~~~~l~sg~~dg~i~vw  361 (435)
T 1p22_A          289 VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DNKRIVSGAYDGKIKVW  361 (435)
T ss_dssp             EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             EEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe---CCcCcEEEEEe--cCCEEEEEeCCCcEEEE
Confidence                 47788888888  47899999999999999999999988887   68899999998  78899999999999999


Q ss_pred             ecCCCc---------eeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          246 SVRSGK---------EVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       246 d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      |+.+++         ++..+.+|.++|.+++|  ++.+|++++.|  +++|++....
T Consensus       362 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          362 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             EHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred             ECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence            997765         78888999999999999  78889999988  9999986554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-37  Score=258.24  Aligned_cols=271  Identities=14%  Similarity=0.212  Sum_probs=216.2

Q ss_pred             eeee-eccee---eEeecc-cCcEEEEeeCCCeEEEEecCC---cce---eeeecccccceeEEEEccCCCeEEEEecCC
Q 036585           11 KVSL-ELSEE---ILQSME-VGIYLVTASDDESIRLYDVTA---ATC---LKTINSKKYGVDLVCFTSHPTTVIYSSKNG   79 (304)
Q Consensus        11 ~~~~-~~~~~---~i~~~~-~~~~l~~~~~d~~i~vw~~~~---~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   79 (304)
                      ...+ ++|..   .+.+++ ++++|++|+.||+|++||+.+   +..   ...+ .|...|.+++|+|+++.|++++.  
T Consensus        55 ~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~--  131 (437)
T 3gre_A           55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK--  131 (437)
T ss_dssp             EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET--
T ss_pred             EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC--
Confidence            4445 55543   467889 999999999999999999876   432   2222 58899999999999999999998  


Q ss_pred             CCCceEEEEcc---Cceeeeeccc------------ccccEEEEE--EcCCCCEEEEcccCCeEEEEeCCcceeeceEEE
Q 036585           80 WDESLRLLSLH---DNKYSRYFKG------------HHDRVVLLS--LCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV  142 (304)
Q Consensus        80 ~d~~i~vwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  142 (304)
                       |+.|++||+.   +++....+..            +...+.++.  +++++.+|++++.|+.|++||+++++....+..
T Consensus       132 -dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  210 (437)
T 3gre_A          132 -DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN  210 (437)
T ss_dssp             -TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             -CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence             9999999995   4444433322            345566666  557899999999999999999999988887775


Q ss_pred             --e--ccceeEecCCC--eEEEecCCCeEEEEec----------CCCCCceEEEEe----cCCcEEEEeeCCCeEEEEEc
Q 036585          143 --Q--GRPAAAYDDQG--LVFGYEKGPLDIFSVG----------GDISDANVVKFS----NDGRLMLLTTMEGHIHVLDS  202 (304)
Q Consensus       143 --~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~----~~~~~l~~~~~dg~i~~~d~  202 (304)
                        +  ....+.+++++  .+.+..++.+.+|++.          .|...|.+++|+    |++.+|++++.||.|++||+
T Consensus       211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~  290 (437)
T 3gre_A          211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF  290 (437)
T ss_dssp             CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred             CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence              2  23356777777  4457778889999764          455678999555    56889999999999999999


Q ss_pred             CCCceeEEEEeCC-----------------------CCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec-
Q 036585          203 FRGTLLSTYNVKP-----------------------VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS-  258 (304)
Q Consensus       203 ~~~~~~~~~~~~~-----------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-  258 (304)
                      ++++....+..+.                       .|...|++++|+ ++++|++|+.|+.|++||+++++....+.+ 
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  369 (437)
T 3gre_A          291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP  369 (437)
T ss_dssp             TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred             CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence            9999888887321                       156679999999 779999999999999999999887766654 


Q ss_pred             ------------------------------------cCCCCceEEeCCC--CcEEEEecCc--eEEec
Q 036585          259 ------------------------------------FDTEPPVIKWAPG--SLMFVTGSSE--LSFWI  286 (304)
Q Consensus       259 ------------------------------------~~~~i~~~~~~~~--~~~l~s~~~d--~~iw~  286 (304)
                                                          |...|++++|+++  +.+|++|+.|  |+||.
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          370 SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             --CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                                                8899999999998  8899999999  88884

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.6e-36  Score=248.98  Aligned_cols=265  Identities=19%  Similarity=0.347  Sum_probs=228.2

Q ss_pred             eeeeecceee--EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585           11 KVSLELSEEI--LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   88 (304)
Q Consensus        11 ~~~~~~~~~~--i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd   88 (304)
                      ...+.+|.+.  ..+.++|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+  ++.+++++.   |+.|++||
T Consensus       111 ~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~---dg~i~vwd  185 (445)
T 2ovr_B          111 PKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGST---DRTLKVWN  185 (445)
T ss_dssp             CEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEET---TSCEEEEE
T ss_pred             eEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeC---CCeEEEEE
Confidence            3456667653  3456789999999999999999999999999999999999999996  679999998   99999999


Q ss_pred             ccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCCeEEEecCCCeEE
Q 036585           89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFGYEKGPLDI  166 (304)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  166 (304)
                      +.+++.+..+.+|...|.++.|+  ++.+++++.||.|++||+++++....+..+...  .+.++.+..+.+..++.+.+
T Consensus       186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i  263 (445)
T 2ovr_B          186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV  263 (445)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEE
T ss_pred             CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEE
Confidence            99999999999999999999996  568999999999999999998887777654443  34555566777888888988


Q ss_pred             EEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec
Q 036585          167 FSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       167 ~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                      |++.         +|...+.+++|  ++.++++++.||.|++||+++++.+..+.   .+...+.++.+  +++++++++
T Consensus       264 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~--~~~~l~~~~  336 (445)
T 2ovr_B          264 WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT---GHQSLTSGMEL--KDNILVSGN  336 (445)
T ss_dssp             EEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC---CCCSCEEEEEE--ETTEEEEEE
T ss_pred             EECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc---CCcccEEEEEE--eCCEEEEEe
Confidence            8753         57788999998  88999999999999999999999988887   67788887776  567999999


Q ss_pred             CCCcEEEEecCCCceeeeeec---cCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          238 GDGSVHAWSVRSGKEVASWMS---FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       238 ~dg~i~v~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      .||.|++||+++++.+..+..   |..+|++++|+  +++|++++.|  +++|++...+
T Consensus       337 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~  393 (445)
T 2ovr_B          337 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE  393 (445)
T ss_dssp             TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred             CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc
Confidence            999999999999999888876   88899999995  5799999988  9999987544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-37  Score=254.57  Aligned_cols=241  Identities=14%  Similarity=0.242  Sum_probs=200.4

Q ss_pred             eeEeecccCc-EEEEeeCCCeEEEEecCCc----ceeeeecccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEccCc
Q 036585           19 EILQSMEVGI-YLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDN   92 (304)
Q Consensus        19 ~~i~~~~~~~-~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~   92 (304)
                      ..+.++++.. ++++++.||.|+||++.+.    +.+..+.+|...|.+++|+| +++.|++++.   |+.|++||+.++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~---dg~v~vw~~~~~  114 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE---DCTVMVWEIPDG  114 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEET---TSEEEEEECCTT
T ss_pred             CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeC---CCeEEEEEccCC
Confidence            3456666654 4446789999999998654    24556788999999999999 8999999998   999999999987


Q ss_pred             -------eeeeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585           93 -------KYSRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL  164 (304)
Q Consensus        93 -------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (304)
                             +++..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++....+.                       
T Consensus       115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------------  171 (402)
T 2aq5_A          115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-----------------------  171 (402)
T ss_dssp             CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-----------------------
T ss_pred             CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-----------------------
Confidence                   5677888999999999999998 699999999999999999887654431                       


Q ss_pred             EEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCc-ceEEEEcCCCcEEEEe---cCCC
Q 036585          165 DIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS-TLEASFSPEGMFVISG---SGDG  240 (304)
Q Consensus       165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~---~~dg  240 (304)
                          ...|...|.+++|+|++++|++++.||.|++||+++++.+..+..  .|... +.+++|+|++++|++|   +.|+
T Consensus       172 ----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~~~~d~  245 (402)
T 2aq5_A          172 ----PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR--PHEGTRPVHAVFVSEGKILTTGFSRMSER  245 (402)
T ss_dssp             ----TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC--SSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred             ----cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc--CCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence                025778899999999999999999999999999999998888732  35444 8899999999999999   8999


Q ss_pred             cEEEEecCCCce-eeee-eccCCCCceEEeCCCCcEEEE-ecCc--eEEeccCCcc
Q 036585          241 SVHAWSVRSGKE-VASW-MSFDTEPPVIKWAPGSLMFVT-GSSE--LSFWIPDLSK  291 (304)
Q Consensus       241 ~i~v~d~~~~~~-~~~~-~~~~~~i~~~~~~~~~~~l~s-~~~d--~~iw~~~~~~  291 (304)
                      .|++||+++++. +... ..|...+.+++|+|++++|++ ++.|  +++|+++..+
T Consensus       246 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          246 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             eEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            999999988664 3333 257788999999999999864 5456  9999998765

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.4e-37  Score=249.82  Aligned_cols=262  Identities=15%  Similarity=0.113  Sum_probs=206.4

Q ss_pred             ceeeeeccee---eEeecccCcEEEEeeCCCeEEEEecCCcceeee--ecccccceeEEEEccCCCeEEEEecCCCCCce
Q 036585           10 DKVSLELSEE---ILQSMEVGIYLVTASDDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   84 (304)
Q Consensus        10 ~~~~~~~~~~---~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i   84 (304)
                      ....+..|..   .+.+++++++|++++.||.|++||+.+++....  +..|...|.+++|+|+++++++++.   |+.|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v  120 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG---SRVI  120 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET---TSSE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC---CCEE
Confidence            3444555543   477889999999999999999999988875444  4678889999999999999999998   9999


Q ss_pred             EEEEccCcee----eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585           85 RLLSLHDNKY----SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE  160 (304)
Q Consensus        85 ~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (304)
                      ++||+..++.    ......|...|.+++|+|++++|++++.|+.|++||++...........     .+..      ..
T Consensus       121 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-----~~~~------~~  189 (372)
T 1k8k_C          121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT-----PWGS------KM  189 (372)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB-----TTBS------CC
T ss_pred             EEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccc-----cccc------cc
Confidence            9999988762    3334578899999999999999999999999999997643211100000     0000      00


Q ss_pred             CCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC
Q 036585          161 KGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG  240 (304)
Q Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  240 (304)
                      .....+..+..|...+.+++|+|++++|++++.||.|++||+++++.+..+.   .+...+.+++|+|++++|+++ .|+
T Consensus       190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-~d~  265 (372)
T 1k8k_C          190 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA---SETLPLLAVTFITESSLVAAG-HDC  265 (372)
T ss_dssp             CTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE---CSSCCEEEEEEEETTEEEEEE-TTS
T ss_pred             chhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc---cCCCCeEEEEEecCCCEEEEE-eCC
Confidence            0111233344678899999999999999999999999999999999999888   678899999999999999888 899


Q ss_pred             cEEEEecCC--Cce--------------------------------e------eee-eccCCCCceEEeC-CCC---cEE
Q 036585          241 SVHAWSVRS--GKE--------------------------------V------ASW-MSFDTEPPVIKWA-PGS---LMF  275 (304)
Q Consensus       241 ~i~v~d~~~--~~~--------------------------------~------~~~-~~~~~~i~~~~~~-~~~---~~l  275 (304)
                      .|++|++.+  ++.                                .      ..+ .+|..+|++++|+ +++   .+|
T Consensus       266 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l  345 (372)
T 1k8k_C          266 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF  345 (372)
T ss_dssp             SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEE
T ss_pred             eEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeE
Confidence            999999987  420                                0      223 4899999999976 666   999


Q ss_pred             EEecCc--eEEeccCC
Q 036585          276 VTGSSE--LSFWIPDL  289 (304)
Q Consensus       276 ~s~~~d--~~iw~~~~  289 (304)
                      ++++.|  +++|+++.
T Consensus       346 ~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          346 CTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             EEEETTSEEEEEEHHH
T ss_pred             EEecCCCceEEEEecC
Confidence            999999  89998754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-38  Score=278.60  Aligned_cols=270  Identities=11%  Similarity=0.104  Sum_probs=205.1

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCccee-----------eeecccccceeEEEEccC-CCeEEEEecCCCCCceE
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCL-----------KTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLR   85 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~   85 (304)
                      ...+.++|++++|++|+.||.|++||+++++..           ..+.+|..+|.+++|+|+ +..+++++.   |+.| 
T Consensus       101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~---dg~v-  176 (902)
T 2oaj_A          101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE---YVTL-  176 (902)
T ss_dssp             EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS---SCEE-
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC---CCcE-
Confidence            345788999999999999999999999987753           345678899999999996 467888887   9999 


Q ss_pred             EEEccCceeeeecccc------------------cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEE-----
Q 036585           86 LLSLHDNKYSRYFKGH------------------HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV-----  142 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----  142 (304)
                      +||+++++.+..+..|                  ...|.+++|+|++++|++++.||.|++||+++++.+.....     
T Consensus       177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~  256 (902)
T 2oaj_A          177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEI  256 (902)
T ss_dssp             EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCT
T ss_pred             EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeeccccc
Confidence            9999999888777655                  57899999999999999999999999999987654321000     


Q ss_pred             e---------------ccceeEe----cCC--------------------------------------------------
Q 036585          143 Q---------------GRPAAAY----DDQ--------------------------------------------------  153 (304)
Q Consensus       143 ~---------------~~~~~~~----~~~--------------------------------------------------  153 (304)
                      +               ....++|    +++                                                  
T Consensus       257 ~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  336 (902)
T 2oaj_A          257 NVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKI  336 (902)
T ss_dssp             TSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEE
T ss_pred             CCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEE
Confidence            0               0001111    010                                                  


Q ss_pred             -----------------------------CeEEEecCCCeEEEEecC----------------CCCCc------------
Q 036585          154 -----------------------------GLVFGYEKGPLDIFSVGG----------------DISDA------------  176 (304)
Q Consensus       154 -----------------------------~~~~~~~~~~~~~~~~~~----------------~~~~v------------  176 (304)
                                                   ..+....++.+.+|++..                |...|            
T Consensus       337 ~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~  416 (902)
T 2oaj_A          337 FPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKL  416 (902)
T ss_dssp             ECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHH
T ss_pred             EecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHH
Confidence                                         011222335566665421                11223            


Q ss_pred             ----------------------eEEEEecCCcEEEEeeCCCeEEEEEcCCCcee--EEEEeC------CCCCCcceEEEE
Q 036585          177 ----------------------NVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL--STYNVK------PVSRNSTLEASF  226 (304)
Q Consensus       177 ----------------------~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~------~~~~~~i~~~~~  226 (304)
                                            ..++|+|++++|++|+.|++|++||+.++...  ..+...      ..|...|.+++|
T Consensus       417 w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svaf  496 (902)
T 2oaj_A          417 WLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISF  496 (902)
T ss_dssp             HHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEE
T ss_pred             HHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEe
Confidence                                  33456789999999999999999999887532  112110      157789999999


Q ss_pred             cCCCcEEEEecCCCcEEEEecCCCc---------------------------------------------eeeeeeccCC
Q 036585          227 SPEGMFVISGSGDGSVHAWSVRSGK---------------------------------------------EVASWMSFDT  261 (304)
Q Consensus       227 s~~~~~l~~~~~dg~i~v~d~~~~~---------------------------------------------~~~~~~~~~~  261 (304)
                      +||+++||+|+.||+|+|||+.+++                                             ++..+.+|.+
T Consensus       497 spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~  576 (902)
T 2oaj_A          497 AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG  576 (902)
T ss_dssp             ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred             cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence            9999999999999999999997652                                             3567788999


Q ss_pred             CCceEEeCCCCcEEEEecCc--eEEeccCCccc
Q 036585          262 EPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       262 ~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~  292 (304)
                      +|++++|+||| +||+|+.|  ++||+.+...+
T Consensus       577 ~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~  608 (902)
T 2oaj_A          577 KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI  608 (902)
T ss_dssp             SEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred             cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence            99999999999 99999999  99999876543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.8e-37  Score=250.20  Aligned_cols=225  Identities=18%  Similarity=0.281  Sum_probs=197.0

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      ..+.++|+|++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++.|++++.   |+.|++||+.+++....+
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~---d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG---DRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC---CCcEEEEECCCCeeEEEE
Confidence            46889999999999999999999999999999999999999999999999999999998   999999999999887777


Q ss_pred             ccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEE-------e--ccceeEecCCCe--EEEecCCCeEE
Q 036585           99 KGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRV-------Q--GRPAAAYDDQGL--VFGYEKGPLDI  166 (304)
Q Consensus        99 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~--~~~~~~~~~~~~--~~~~~~~~~~~  166 (304)
                      . +...+.+++|+| ++++|++++.|+.|++||++++.....+..       +  ....+.+++++.  +.+..++.+++
T Consensus       204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~  282 (393)
T 1erj_A          204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL  282 (393)
T ss_dssp             E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            6 667899999999 899999999999999999998876655421       1  123567788774  44667888999


Q ss_pred             EEec---------------------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEE
Q 036585          167 FSVG---------------------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS  225 (304)
Q Consensus       167 ~~~~---------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~  225 (304)
                      |++.                     +|...|.+++|+|++++|++++.||.|++||+++++.+..+.   +|...|.+++
T Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~---~h~~~v~~v~  359 (393)
T 1erj_A          283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ---GHRNSVISVA  359 (393)
T ss_dssp             EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEE
T ss_pred             EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC---CCCCCEEEEE
Confidence            8764                     467789999999999999999999999999999999998888   7899999999


Q ss_pred             EcC------CCcEEEEecCCCcEEEEecCCC
Q 036585          226 FSP------EGMFVISGSGDGSVHAWSVRSG  250 (304)
Q Consensus       226 ~s~------~~~~l~~~~~dg~i~v~d~~~~  250 (304)
                      |++      ++++|++|+.||.|++|+++..
T Consensus       360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          360 VANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             ECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             ecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            886      6899999999999999998643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.7e-37  Score=250.94  Aligned_cols=278  Identities=15%  Similarity=0.205  Sum_probs=223.3

Q ss_pred             eeeeeccee---eEeecc-cCcEEEEeeCCCeEEEEecCCcceeeeec-------------ccccceeEEEEcc-CCCeE
Q 036585           11 KVSLELSEE---ILQSME-VGIYLVTASDDESIRLYDVTAATCLKTIN-------------SKKYGVDLVCFTS-HPTTV   72 (304)
Q Consensus        11 ~~~~~~~~~---~i~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~~l   72 (304)
                      ...+.+|..   .+.++| ++++|++++.||.|++||+.+++....+.             +|...|.+++|+| ++..+
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            334444544   467889 99999999999999999999877655543             5889999999999 77799


Q ss_pred             EEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCC---CCEEEEcccCCeEEEEeCCcceeeceEEEecc--ce
Q 036585           73 IYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSS---KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PA  147 (304)
Q Consensus        73 ~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~  147 (304)
                      ++++.   |+.|++||+.+++....+. +...+.++.|+|.   +.++++++.|+.|++||+++++....+..+..  ..
T Consensus       116 ~s~~~---d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~  191 (408)
T 4a11_B          116 TSSSF---DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA  191 (408)
T ss_dssp             EEEET---TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred             EEEeC---CCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence            99998   9999999999998888776 7788999999984   44999999999999999998887776654433  35


Q ss_pred             eEecCCC---eEEEecCCCeEEEEe-------------------------cCCCCCceEEEEecCCcEEEEeeCCCeEEE
Q 036585          148 AAYDDQG---LVFGYEKGPLDIFSV-------------------------GGDISDANVVKFSNDGRLMLLTTMEGHIHV  199 (304)
Q Consensus       148 ~~~~~~~---~~~~~~~~~~~~~~~-------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  199 (304)
                      +.+++++   .+.+..++.+.+|++                         ..|...|.+++|+|++++|++++.||.|++
T Consensus       192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  271 (408)
T 4a11_B          192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL  271 (408)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence            6778776   345778899999988                         457788999999999999999999999999


Q ss_pred             EEcCCCceeEEEEeCC--CCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEE
Q 036585          200 LDSFRGTLLSTYNVKP--VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVT  277 (304)
Q Consensus       200 ~d~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  277 (304)
                      ||+++++.........  .....+........+..+++++.++.|++||+.+++++..+.+|...|++++|+|++++|++
T Consensus       272 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  351 (408)
T 4a11_B          272 WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS  351 (408)
T ss_dssp             EETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             EECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence            9999887655443110  11122222222334556667778999999999999999999999999999999999999999


Q ss_pred             ecCc--eEEeccCCccc
Q 036585          278 GSSE--LSFWIPDLSKL  292 (304)
Q Consensus       278 ~~~d--~~iw~~~~~~~  292 (304)
                      ++.|  +++|+++..+.
T Consensus       352 ~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          352 GSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             EETTSCEEEEEECC---
T ss_pred             ECCCCeEEEEeCCCCCc
Confidence            9998  99999876543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-38  Score=252.33  Aligned_cols=229  Identities=13%  Similarity=0.111  Sum_probs=185.5

Q ss_pred             eecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc---------Cc
Q 036585           22 QSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH---------DN   92 (304)
Q Consensus        22 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~---------~~   92 (304)
                      .+..++++|++|+.||.|++||+.+++.+..+.  ...|.++.|+|+   +++++.   |+.|++|+..         ++
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~---D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGP---CNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECS---TTEEEEEETTTEEEEEETTTC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecC---CCeEEEEEccCceEEeecCCc
Confidence            344678999999999999999999999888876  457888899888   888888   9999999765         34


Q ss_pred             eeeeecc-cccccEEEEEEcC--CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEe
Q 036585           93 KYSRYFK-GHHDRVVLLSLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSV  169 (304)
Q Consensus        93 ~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (304)
                      +.+..+. +|.++|.+++|+|  +++++++++.||.|++||+++++......                            
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~----------------------------  166 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS----------------------------  166 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC----------------------------
T ss_pred             ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe----------------------------
Confidence            4333333 5668999999999  99999999999999999999887643321                            


Q ss_pred             cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCcee-EEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          170 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL-STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       170 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                      ..+...+.+++|+|++.+|++|+.||.|++||+++++.. ..+..  .|..+|++++|+|++.+|++++ |+.|++||++
T Consensus       167 ~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~  243 (343)
T 3lrv_A          167 AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV--DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLR  243 (343)
T ss_dssp             CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC--CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETT
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec--cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcC
Confidence            124457999999999999999999999999999999877 66652  2889999999999999999999 5599999999


Q ss_pred             CCceeeeeec---cCCCCc--eEEeCCCCcEEEEecC-c--eEEeccCC
Q 036585          249 SGKEVASWMS---FDTEPP--VIKWAPGSLMFVTGSS-E--LSFWIPDL  289 (304)
Q Consensus       249 ~~~~~~~~~~---~~~~i~--~~~~~~~~~~l~s~~~-d--~~iw~~~~  289 (304)
                      +++.+..+..   |...+.  +++|+|++++|++++. |  ++||+++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          244 KDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             SSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence            9877655543   445555  5999999999999765 5  99998854

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.2e-37  Score=250.82  Aligned_cols=239  Identities=16%  Similarity=0.235  Sum_probs=203.7

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeecc-cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR  104 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  104 (304)
                      ++..+++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++++.   ||.|++||+.+++.+..+.+|...
T Consensus       102 s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~  178 (401)
T 4aez_A          102 SNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLG---NGLVDIYDVESQTKLRTMAGHQAR  178 (401)
T ss_dssp             CTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEEEECCCSSC
T ss_pred             cCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECC---CCeEEEEECcCCeEEEEecCCCCc
Confidence            456788899999999999999998877776 7889999999999999999998   999999999999999999999999


Q ss_pred             EEEEEEcCCCCEEEEcccCCeEEEEeCCcce-eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec
Q 036585          105 VVLLSLCSSKDCFISGSLDRTVLLWDQRAEK-CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN  183 (304)
Q Consensus       105 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (304)
                      |.+++|  +++++++++.||.|++||++... ....+                             .+|...|.+++|+|
T Consensus       179 v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------------------~~~~~~v~~~~~~~  227 (401)
T 4aez_A          179 VGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTL-----------------------------QGHSSEVCGLAWRS  227 (401)
T ss_dssp             EEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE-----------------------------ECCSSCEEEEEECT
T ss_pred             eEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEE-----------------------------cCCCCCeeEEEEcC
Confidence            999999  46799999999999999998433 22222                             36778999999999


Q ss_pred             CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC-cEEEEec--CCCcEEEEecCCCceeeeeeccC
Q 036585          184 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG-MFVISGS--GDGSVHAWSVRSGKEVASWMSFD  260 (304)
Q Consensus       184 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~  260 (304)
                      ++++|++++.||.|++||+++++....+.   .|...+.+++|+|++ .++++++  .|+.|++||+.+++++..+. +.
T Consensus       228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~  303 (401)
T 4aez_A          228 DGLQLASGGNDNVVQIWDARSSIPKFTKT---NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AG  303 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTCSSEEEEEC---CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CS
T ss_pred             CCCEEEEEeCCCeEEEccCCCCCccEEec---CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CC
Confidence            99999999999999999999998888876   688999999999976 4566654  79999999999999988885 67


Q ss_pred             CCCceEEeCCCCcEEEEec--Cc--eEEeccCCccc---cccccCCCCC
Q 036585          261 TEPPVIKWAPGSLMFVTGS--SE--LSFWIPDLSKL---GAYVGRNRGC  302 (304)
Q Consensus       261 ~~i~~~~~~~~~~~l~s~~--~d--~~iw~~~~~~~---~~~~~~~~g~  302 (304)
                      ..|.+++|+|+++++++++  .|  +++|++.....   ..+.+|...+
T Consensus       304 ~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v  352 (401)
T 4aez_A          304 SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRV  352 (401)
T ss_dssp             SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCC
T ss_pred             CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCE
Confidence            7899999999999999843  56  99999866433   2344555443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4e-37  Score=241.81  Aligned_cols=207  Identities=15%  Similarity=0.257  Sum_probs=177.5

Q ss_pred             eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC--ceeeeecccccccEEEEEEcC--CCCEEEEcccCCe
Q 036585           50 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--NKYSRYFKGHHDRVVLLSLCS--SKDCFISGSLDRT  125 (304)
Q Consensus        50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~  125 (304)
                      +..+.+|...|.+++|+|++++|++++.   |++|++||+.+  .+.+..+.+|.++|.+++|+|  ++++|++++.|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~---D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~   78 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSS---DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEET---TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeC---CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence            3457789999999999999999999998   99999999975  367788999999999999986  3889999999999


Q ss_pred             EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC--CcEEEEeeCCCeEEEEEcC
Q 036585          126 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSF  203 (304)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~  203 (304)
                      |++||+++++......                           +..|...|.+++|+|+  +.+|++++.||.|++||++
T Consensus        79 v~iWd~~~~~~~~~~~---------------------------~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~  131 (297)
T 2pm7_B           79 VMIWKEENGRWSQIAV---------------------------HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK  131 (297)
T ss_dssp             EEEEEBSSSCBCCCEE---------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred             EEEEEcCCCceEEEEE---------------------------eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence            9999998764322211                           2357788999999997  8899999999999999998


Q ss_pred             CCce--eEEEEeCCCCCCcceEEEEcCC-------------CcEEEEecCCCcEEEEecCCCc----eeeeeeccCCCCc
Q 036585          204 RGTL--LSTYNVKPVSRNSTLEASFSPE-------------GMFVISGSGDGSVHAWSVRSGK----EVASWMSFDTEPP  264 (304)
Q Consensus       204 ~~~~--~~~~~~~~~~~~~i~~~~~s~~-------------~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~i~  264 (304)
                      ++..  ...+.   .|...+.+++|+|+             +++|++|+.|+.|++||+++++    ....+.+|...|.
T Consensus       132 ~~~~~~~~~~~---~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~  208 (297)
T 2pm7_B          132 ENGTTSPIIID---AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR  208 (297)
T ss_dssp             SSSCBCCEEEE---CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred             CCCceeeeeee---cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence            7642  23444   68889999999997             5799999999999999998766    5667889999999


Q ss_pred             eEEeCCCC---cEEEEecCc--eEEeccCC
Q 036585          265 VIKWAPGS---LMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       265 ~~~~~~~~---~~l~s~~~d--~~iw~~~~  289 (304)
                      +++|+|++   .+|++++.|  ++||+++.
T Consensus       209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             EEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence            99999984   899999999  99999865

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.7e-36  Score=250.36  Aligned_cols=270  Identities=19%  Similarity=0.284  Sum_probs=226.7

Q ss_pred             ceeeeecceeeEeec-ccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585           10 DKVSLELSEEILQSM-EVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   88 (304)
Q Consensus        10 ~~~~~~~~~~~i~~~-~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd   88 (304)
                      ....+.+|...+... .+++++++++.||.|++||+.+++.+..+.+|...|.+++|+  ++.+++++.   |+.|++||
T Consensus       151 ~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~---dg~i~~wd  225 (445)
T 2ovr_B          151 CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR---DATLRVWD  225 (445)
T ss_dssp             EEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET---TSEEEEEE
T ss_pred             EEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC---CCEEEEEE
Confidence            344555666554433 347899999999999999999999999999999999999994  678999998   99999999


Q ss_pred             ccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCCeEEEecCCCeEE
Q 036585           89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFGYEKGPLDI  166 (304)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  166 (304)
                      +.+++.+..+.+|...|.++.|  +++++++++.||.|++||+++++....+..+...  .+.++....+.+..++.+.+
T Consensus       226 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i  303 (445)
T 2ovr_B          226 IETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV  303 (445)
T ss_dssp             SSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred             CCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEE
Confidence            9999999999999999999999  6789999999999999999998887776544433  34455555666778888888


Q ss_pred             EEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec
Q 036585          167 FSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       167 ~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                      |++.         +|...+.++.+  +++++++++.||.|++||+++++.+..+.....+...|++++|+  +++|++|+
T Consensus       304 ~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~  379 (445)
T 2ovr_B          304 WDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS  379 (445)
T ss_dssp             EETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE
T ss_pred             EECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEe
Confidence            8764         45566666665  57799999999999999999999998888555588899999995  57999999


Q ss_pred             CCCcEEEEecCCCceeeee-----eccCCCCceEEeCCCCcEEEEecCc------eEEeccCCc
Q 036585          238 GDGSVHAWSVRSGKEVASW-----MSFDTEPPVIKWAPGSLMFVTGSSE------LSFWIPDLS  290 (304)
Q Consensus       238 ~dg~i~v~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~~d------~~iw~~~~~  290 (304)
                      .||.|++||+.+++.+..+     ..|.+.|++++|+|++.++++++.|      +.+|+++.+
T Consensus       380 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          380 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            9999999999999988887     4788899999999999999999877      557777653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.8e-37  Score=285.40  Aligned_cols=276  Identities=14%  Similarity=0.182  Sum_probs=231.5

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC-------
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-------   91 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~-------   91 (304)
                      ..+.++|+++++++++.||.|++||+.+++.+..+.+|...|.+++|+|+++.+++++.   |+.|++|++.+       
T Consensus       844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~---dg~v~vw~~~~~~~~~~~  920 (1249)
T 3sfz_A          844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASD---DQTIRVWETKKVCKNSAI  920 (1249)
T ss_dssp             CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEEHHHHHSCCSS
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeC---CCeEEEEEccccceeeee
Confidence            35778899999999999999999999999999999999999999999999999999988   88888887542       


Q ss_pred             ------------------------------------------------------------------------ceeeeecc
Q 036585           92 ------------------------------------------------------------------------NKYSRYFK   99 (304)
Q Consensus        92 ------------------------------------------------------------------------~~~~~~~~   99 (304)
                                                                                              ++....+.
T Consensus       921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A          921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp             SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred             cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence                                                                                    22334456


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec-cceeEecCCCe-EEEecCCCeEEEEec-------
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGL-VFGYEKGPLDIFSVG-------  170 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~-------  170 (304)
                      +|...|.+++|+|+++++++++.||.|++||+.+++......... ...+.+.+++. +.+..++.+.+|++.       
T Consensus      1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 1080 (1249)
T 3sfz_A         1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERD 1080 (1249)
T ss_dssp             CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEE
Confidence            788999999999999999999999999999999887765432222 22455666664 446667888888764       


Q ss_pred             --CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          171 --GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       171 --~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                        +|...|.+++|+|+++++++++.||.|++||+.+++....+.   .|...|++++|+|++++|++++.||.|++||+.
T Consensus      1081 ~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~---~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A         1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK---GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp             EECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC---CCSSCEEEEEECSSSSEEEEEETTSCCCEEESS
T ss_pred             EcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec---cCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence              478889999999999999999999999999999998887776   688999999999999999999999999999999


Q ss_pred             CCceeeee---------eccCCCCceEEeCCCCcEEEEecCceEEeccCCcc-ccccccCCC
Q 036585          249 SGKEVASW---------MSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSK-LGAYVGRNR  300 (304)
Q Consensus       249 ~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~-~~~~~~~~~  300 (304)
                      +++.+..+         ..|.+.|++++|+|++++|++++..+++|+++..+ +..+.+|..
T Consensus      1158 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g~~~~~~~~~~~ 1219 (1249)
T 3sfz_A         1158 DGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQTFYTNGT 1219 (1249)
T ss_dssp             SSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSSCBCCCCCCCSSC
T ss_pred             CCceEEEeccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCCCceeeeeeccCC
Confidence            98877665         67899999999999999999998669999986543 455555544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.3e-36  Score=250.82  Aligned_cols=244  Identities=17%  Similarity=0.273  Sum_probs=192.1

Q ss_pred             eeEeecccC--cEEEEeeCCCeEEEEecCCccee---------------------------------------ee-eccc
Q 036585           19 EILQSMEVG--IYLVTASDDESIRLYDVTAATCL---------------------------------------KT-INSK   56 (304)
Q Consensus        19 ~~i~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~---------------------------------------~~-~~~~   56 (304)
                      ..+.+++++  .+|++++.|+.|++||+.+++..                                       .. ..+|
T Consensus        97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  176 (447)
T 3dw8_B           97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH  176 (447)
T ss_dssp             CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred             EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence            347889988  79999999999999998764432                                       12 3679


Q ss_pred             ccceeEEEEccCCCeEEEEecCCCCCceEEEEccC-ceeee-------ecccccccEEEEEEcCCC-CEEEEcccCCeEE
Q 036585           57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYSR-------YFKGHHDRVVLLSLCSSK-DCFISGSLDRTVL  127 (304)
Q Consensus        57 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~  127 (304)
                      ...|.+++|+|+++.|+++ .   |+.|++||+.+ ++...       .+.+|...|.+++|+|++ ++|++++.||.|+
T Consensus       177 ~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  252 (447)
T 3dw8_B          177 TYHINSISINSDYETYLSA-D---DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR  252 (447)
T ss_dssp             SSCCCEEEECTTSSEEEEE-C---SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             CcceEEEEEcCCCCEEEEe-C---CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence            9999999999999999998 6   99999999984 44443       366899999999999998 8999999999999


Q ss_pred             EEeCCccee----eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC
Q 036585          128 LWDQRAEKC----QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  203 (304)
Q Consensus       128 iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  203 (304)
                      +||+++++.    ...+..+..+.                 ....+..|...|.+++|+|++++|++++. +.|++||++
T Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLFEEPEDPS-----------------NRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             EEETTTCSSSCTTCEEECCC----------------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETT
T ss_pred             EEECcCCccccceeeEeccCCCcc-----------------ccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCC
Confidence            999998775    22222110000                 00000112348999999999999999999 999999999


Q ss_pred             C-CceeEEEEeCCCCCCc---------------ceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee----------
Q 036585          204 R-GTLLSTYNVKPVSRNS---------------TLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM----------  257 (304)
Q Consensus       204 ~-~~~~~~~~~~~~~~~~---------------i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----------  257 (304)
                      + ++.+..+.   .|...               +..++|+|++++|++|+.||.|++||+.+++.+. +.          
T Consensus       315 ~~~~~~~~~~---~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~  390 (447)
T 3dw8_B          315 MENRPVETYQ---VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRT  390 (447)
T ss_dssp             CCSSCSCCEE---SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTC
T ss_pred             CCccccceee---ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeeccccccccc
Confidence            7 88888887   34321               3348999999999999999999999999887642 21          


Q ss_pred             -----------------------ccCCCCceEEeCCCCcEEEEecCc-eEEeccC
Q 036585          258 -----------------------SFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPD  288 (304)
Q Consensus       258 -----------------------~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~  288 (304)
                                             .+...|..++|+|++.+||+++.+ +.+|.-.
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~~  445 (447)
T 3dw8_B          391 VLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDK  445 (447)
T ss_dssp             BCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEECC
T ss_pred             ccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeeccc
Confidence                                   234578899999999999999999 8888654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-36  Score=241.97  Aligned_cols=214  Identities=15%  Similarity=0.218  Sum_probs=173.5

Q ss_pred             CcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc--eeeeec-cc-ccccEEEEEEcCCCCEEEEcc
Q 036585           46 AATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--KYSRYF-KG-HHDRVVLLSLCSSKDCFISGS  121 (304)
Q Consensus        46 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~  121 (304)
                      +.+++..+.+|..+|.+++|+|+  +|++++.   |+.|++||+..+  +....+ .+ |...|.+++|+|++++|++++
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~---D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s   77 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG--ILATGST---DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS   77 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT--EEEEEES---SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred             ccccceeeccCCCceeeeccCCC--EEEEEcC---CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence            45677889999999999999987  8999998   999999999875  344445 34 999999999999999999999


Q ss_pred             cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEE
Q 036585          122 LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLD  201 (304)
Q Consensus       122 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  201 (304)
                      .|++|++||++.......                      ....+..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus        78 ~D~~v~iw~~~~~~~~~~----------------------~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           78 FDSTVSIWAKEESADRTF----------------------EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             TTSCEEEEEC-------C----------------------CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCCcEEEEEcccCcCccc----------------------cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            999999999864321000                      0011233457889999999999999999999999999999


Q ss_pred             cCCC----ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC--ceeeeeeccCCCCceEEeCCC--Cc
Q 036585          202 SFRG----TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG--KEVASWMSFDTEPPVIKWAPG--SL  273 (304)
Q Consensus       202 ~~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~--~~  273 (304)
                      ++..    +.+..+.   .|...|.+++|+|++++|++++.|+.|++||..++  +++..+.+|...|.+++|+|+  +.
T Consensus       136 ~~~~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  212 (330)
T 2hes_X          136 TDESGEEYECISVLQ---EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVF  212 (330)
T ss_dssp             CCTTCCCCEEEEEEC---CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSC
T ss_pred             ccCCCCCeEEEEEec---cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCee
Confidence            9532    3344444   68899999999999999999999999999999776  577888999999999999998  67


Q ss_pred             EEEEecCc--eEEeccCC
Q 036585          274 MFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       274 ~l~s~~~d--~~iw~~~~  289 (304)
                      +|++++.|  +++|++..
T Consensus       213 ~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          213 RLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEEEETTSCEEEEEEEE
T ss_pred             EEEEEeCCCeEEEEEecC
Confidence            89999999  99998854

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-36  Score=249.95  Aligned_cols=241  Identities=12%  Similarity=0.123  Sum_probs=201.3

Q ss_pred             eecceeeEeecccCcEEEEeeCCCeEEEEecCCcc---eeeeeccc----------------------------------
Q 036585           14 LELSEEILQSMEVGIYLVTASDDESIRLYDVTAAT---CLKTINSK----------------------------------   56 (304)
Q Consensus        14 ~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~----------------------------------   56 (304)
                      +.+....+.++++|++|+++ .++.|++||+.+++   .+..+..+                                  
T Consensus         3 ~~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            3 VIHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             EECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             ccccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            44556678899999976666 57799999999988   65555432                                  


Q ss_pred             --------------------ccceeEEEEccCCCeE-EEEecCCCCCceEEEEcc--Cceeeeecc--cccccEEEEEEc
Q 036585           57 --------------------KYGVDLVCFTSHPTTV-IYSSKNGWDESLRLLSLH--DNKYSRYFK--GHHDRVVLLSLC  111 (304)
Q Consensus        57 --------------------~~~v~~~~~~~~~~~l-~~~~~~~~d~~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~  111 (304)
                                          ...|.+++|+|++++| ++++.   |+.|++||+.  +++.+..+.  .|...|.+++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  158 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADS---DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA  158 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGG---GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECC---CCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence                                2369999999999996 77777   9999999999  888887776  466899999999


Q ss_pred             CCCCEEEEcccCCeEEEEeCCcceeec-eEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC---CcE
Q 036585          112 SSKDCFISGSLDRTVLLWDQRAEKCQG-LLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND---GRL  187 (304)
Q Consensus       112 ~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~  187 (304)
                      |++++|++++.+|.+++|++.+..... ...                          .+.+|...|.+++|+|+   +++
T Consensus       159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~--------------------------~~~~h~~~v~~~~~sp~~~~~~~  212 (450)
T 2vdu_B          159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQE--------------------------PILGHVSMLTDVHLIKDSDGHQF  212 (450)
T ss_dssp             TTSSEEEEEETTSEEEEEETTSCCCSSCCCC--------------------------CSEECSSCEEEEEEEECTTSCEE
T ss_pred             CCCCEEEEEeCCCcEEEEecCCcccccccce--------------------------eeecccCceEEEEEcCCCCCCcE
Confidence            999999999999999999998776543 000                          11246788999999999   999


Q ss_pred             EEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec---------
Q 036585          188 MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS---------  258 (304)
Q Consensus       188 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---------  258 (304)
                      |++++.|+.|++||+++++.+..+..  +|...|.+++|+ ++++|++++.|+.|++||+++++++..+..         
T Consensus       213 l~s~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~  289 (450)
T 2vdu_B          213 IITSDRDEHIKISHYPQCFIVDKWLF--GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLN  289 (450)
T ss_dssp             EEEEETTSCEEEEEESCTTCEEEECC--CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCC
T ss_pred             EEEEcCCCcEEEEECCCCceeeeeec--CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhh
Confidence            99999999999999999887766432  588999999999 999999999999999999999998877753         


Q ss_pred             ----------------cCCCCceEEeCCCCcEEEEec-Cc--eEEecc
Q 036585          259 ----------------FDTEPPVIKWAPGSLMFVTGS-SE--LSFWIP  287 (304)
Q Consensus       259 ----------------~~~~i~~~~~~~~~~~l~s~~-~d--~~iw~~  287 (304)
                                      ....|.+++|+|++++|++++ .+  +++|++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          290 DQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             TTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             hcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence                            235688999999999999988 55  999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.7e-36  Score=259.11  Aligned_cols=241  Identities=13%  Similarity=0.138  Sum_probs=212.6

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCc----ceeeeecccccc-eeEEEEcc--CCCeEEEEecCCCCCceEEEEc
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAA----TCLKTINSKKYG-VDLVCFTS--HPTTVIYSSKNGWDESLRLLSL   89 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~~~~d~~i~vwd~   89 (304)
                      ....+.++|+|++|++++ ++.|++||+.++    +....+.+|... |.+++|+|  ++++|++++.   |+.|++||+
T Consensus        20 ~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~---dg~v~vw~~   95 (615)
T 1pgu_A           20 FTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE---SGKVIVWGW   95 (615)
T ss_dssp             CCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET---TSEEEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecC---CCEEEEEeC
Confidence            345688999999999998 789999999998    889999999999 99999999  9999999998   999999999


Q ss_pred             cCc--------eeeeecccccccEEEEEEcCCCCEEEEcccC----CeEEEEeCCcceeeceEEEeccceeEecCCCeEE
Q 036585           90 HDN--------KYSRYFKGHHDRVVLLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF  157 (304)
Q Consensus        90 ~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (304)
                      .++        +....+..|..+|.+++|+|++++|++++.+    +.|++||.  ++...                   
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~-------------------  154 (615)
T 1pgu_A           96 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSLG-------------------  154 (615)
T ss_dssp             EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCEEE-------------------
T ss_pred             CCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCcce-------------------
Confidence            754        6677788899999999999999999999987    78999983  33222                   


Q ss_pred             EecCCCeEEEEecCCCCCceEEEEecCCc-EEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCC---cceEEEEcCC-CcE
Q 036585          158 GYEKGPLDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN---STLEASFSPE-GMF  232 (304)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---~i~~~~~s~~-~~~  232 (304)
                                .+.+|...|.+++|+|+++ .+++++.||.|++||+.+++....+.   .|..   .+.+++|+|+ +++
T Consensus       155 ----------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~  221 (615)
T 1pgu_A          155 ----------EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR---THHKQGSFVRDVEFSPDSGEF  221 (615)
T ss_dssp             ----------ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC---SSSCTTCCEEEEEECSTTCCE
T ss_pred             ----------eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec---ccCCCCceEEEEEECCCCCCE
Confidence                      2236788999999999998 79999999999999999999888887   5777   8999999999 999


Q ss_pred             EEEecCCCcEEEEecCCCceeeee-e---ccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc-ccccc
Q 036585          233 VISGSGDGSVHAWSVRSGKEVASW-M---SFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK-LGAYV  296 (304)
Q Consensus       233 l~~~~~dg~i~v~d~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~-~~~~~  296 (304)
                      |++++.||.|++||+++++.+..+ .   .|..+|.+++|+ ++++|++++.|  +++|++...+ +..+.
T Consensus       222 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  291 (615)
T 1pgu_A          222 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT  291 (615)
T ss_dssp             EEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            999999999999999999999888 6   899999999999 99999999988  9999987543 33343

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-35  Score=237.77  Aligned_cols=226  Identities=16%  Similarity=0.263  Sum_probs=198.9

Q ss_pred             eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEE
Q 036585           49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLL  128 (304)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  128 (304)
                      ....+.+|...|.+++|+|++++|++++.   |+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSK---DSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEES---SSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeC---CCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            34568899999999999999999999998   999999999999999999999999999999999999999999999999


Q ss_pred             EeCCcceeeceEEEecc-ceeEecCCCeEE--EecC-----CCeEEEEecCCC--------------------C--CceE
Q 036585          129 WDQRAEKCQGLLRVQGR-PAAAYDDQGLVF--GYEK-----GPLDIFSVGGDI--------------------S--DANV  178 (304)
Q Consensus       129 wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~--------------------~--~v~~  178 (304)
                      ||+++++....+..... ..+.+++++..+  +..+     +.+.+|++....                    .  .+.+
T Consensus       101 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          101 WDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             EECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            99999988877763322 356778877443  4444     788888876432                    1  8999


Q ss_pred             EEEecCCcEEEEeeCCCeEEEEEcCC-CceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee
Q 036585          179 VKFSNDGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM  257 (304)
Q Consensus       179 ~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  257 (304)
                      ++|+|++++|++++.||.|++||+++ ++....+.   .+...+.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus       181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID---LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe---cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence            99999999999999999999999998 67777777   688999999999999999999999999999999999888887


Q ss_pred             ccCCCCceEEeCCCCcEEEEecCc
Q 036585          258 SFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       258 ~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                       +...+.+++|+|+++++++++.+
T Consensus       258 -~~~~~~~~~~~~~~~~l~~~~~~  280 (369)
T 3zwl_B          258 -TDCPLNTAVITPLKEFIILGGGQ  280 (369)
T ss_dssp             -CSSCEEEEEECSSSSEEEEEECC
T ss_pred             -CCCCceeEEecCCCceEEEeecC
Confidence             78899999999999999998764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-37  Score=251.44  Aligned_cols=258  Identities=10%  Similarity=0.109  Sum_probs=189.6

Q ss_pred             eeeeecce---eeEeecccCcEEEEeeCCCeEEEEecCCcc---eeeeecccccceeEEEEccCCCeEEEEecCCCCCce
Q 036585           11 KVSLELSE---EILQSMEVGIYLVTASDDESIRLYDVTAAT---CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESL   84 (304)
Q Consensus        11 ~~~~~~~~---~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i   84 (304)
                      ...+..|.   ..+.+++++++|++++.|+.|++||+.+++   ....+..|...|.+++|+|+++.|++++.   |+.|
T Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i  124 (377)
T 3dwl_C           48 ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG---ARVI  124 (377)
T ss_dssp             CCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEES---SSCE
T ss_pred             EEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec---CCeE
Confidence            33444554   346788999999999999999999999877   67778889999999999999999999998   9999


Q ss_pred             EEEEccCce---eeeeccc-ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585           85 RLLSLHDNK---YSRYFKG-HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE  160 (304)
Q Consensus        85 ~vwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (304)
                      ++||+.+++   ....+.. |...|.+++|+|++++|++++.|+.|++||++...........     .+....      
T Consensus       125 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~------  193 (377)
T 3dwl_C          125 SVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS-----VWGSRL------  193 (377)
T ss_dssp             EECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC-----SSCSCC------
T ss_pred             EEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc-----cccccc------
Confidence            999999887   3667777 9999999999999999999999999999998754322110000     000000      


Q ss_pred             CCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce----eEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585          161 KGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL----LSTYNVKPVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                      .....+..+ .|...|.+++|+|++++|++++.||.|++||+++++.    +..+.   .|...+.+++|+|++++|+++
T Consensus       194 ~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~  269 (377)
T 3dwl_C          194 PFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK---LSQLPLRSLLWANESAIVAAG  269 (377)
T ss_dssp             CEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE---CSSSCEEEEEEEETTEEEEEE
T ss_pred             chhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec---CCCCceEEEEEcCCCCEEEEE
Confidence            000012222 6888999999999999999999999999999999887    66666   688899999999999999999


Q ss_pred             cCCCcEEEEecCCCc--ee----------------------------------eee----------------eccCCCCc
Q 036585          237 SGDGSVHAWSVRSGK--EV----------------------------------ASW----------------MSFDTEPP  264 (304)
Q Consensus       237 ~~dg~i~v~d~~~~~--~~----------------------------------~~~----------------~~~~~~i~  264 (304)
                      +.++.+ +|+.....  ..                                  ..+                ..|...|+
T Consensus       270 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~  348 (377)
T 3dwl_C          270 YNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIA  348 (377)
T ss_dssp             SSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEE
T ss_pred             cCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeE
Confidence            866655 77664211  00                                  001                12889999


Q ss_pred             eEEeCCCC-c---EEEEecCc--eEEecc
Q 036585          265 VIKWAPGS-L---MFVTGSSE--LSFWIP  287 (304)
Q Consensus       265 ~~~~~~~~-~---~l~s~~~d--~~iw~~  287 (304)
                      ++++.+.. .   .|+|++.|  ++||++
T Consensus       349 ~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          349 TLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             EEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            99976644 2   69999999  999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.2e-35  Score=235.36  Aligned_cols=241  Identities=17%  Similarity=0.283  Sum_probs=199.0

Q ss_pred             cCCcceeeeecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEccCce-----eeeecccccccEEEEEEcCCCCEE
Q 036585           44 VTAATCLKTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHDNK-----YSRYFKGHHDRVVLLSLCSSKDCF  117 (304)
Q Consensus        44 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l  117 (304)
                      .++.++..+|++|.+.|++++|+|+ +++|++++.   |++|++||+.+.+     +...+.+|...|.+++|+|++++|
T Consensus        25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~---D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l  101 (340)
T 4aow_A           25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASR---DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA  101 (340)
T ss_dssp             -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEET---TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcC---CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEE
Confidence            3445567789999999999999998 578999998   9999999997653     466788999999999999999999


Q ss_pred             EEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCC--eEEEecCCCeEEEEe----------cCCCCCceEEEEec
Q 036585          118 ISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQG--LVFGYEKGPLDIFSV----------GGDISDANVVKFSN  183 (304)
Q Consensus       118 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~  183 (304)
                      ++++.|+.|++|+................  ...+.+++  .+.+..++.+.+|+.          .+|...+..++|++
T Consensus       102 ~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~  181 (340)
T 4aow_A          102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP  181 (340)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred             EEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence            99999999999999888776655543332  23334433  444566777777764          34678899999988


Q ss_pred             CC--cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCC
Q 036585          184 DG--RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDT  261 (304)
Q Consensus       184 ~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  261 (304)
                      ++  .++++++.|+.|++||+++++....+.   .|...|++++|+|++++|++|+.|+.|++||+++.+++..+.. ..
T Consensus       182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~  257 (340)
T 4aow_A          182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHI---GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GD  257 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SS
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCceeeEec---CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-Cc
Confidence            64  578899999999999999999888887   6889999999999999999999999999999999998888864 46


Q ss_pred             CCceEEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585          262 EPPVIKWAPGSLMFVTGSSE-LSFWIPDLSK  291 (304)
Q Consensus       262 ~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~  291 (304)
                      .+.+++|+|++.+++++... +++|+++...
T Consensus       258 ~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~  288 (340)
T 4aow_A          258 IINALCFSPNRYWLCAATGPSIKIWDLEGKI  288 (340)
T ss_dssp             CEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred             eEEeeecCCCCceeeccCCCEEEEEECCCCe
Confidence            89999999998877766655 9999987543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.7e-36  Score=241.28  Aligned_cols=199  Identities=15%  Similarity=0.161  Sum_probs=167.8

Q ss_pred             eeEeecccCcEEEEe--eCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           19 EILQSMEVGIYLVTA--SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ..+.++|||++++++  +.|++|+|||+++++++..+. |...|.+++|+|+++++++++    ++.+++|+..+++.+.
T Consensus       137 ~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s----~~~~~~~~~~~~~~~~  211 (365)
T 4h5i_A          137 KLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT----GSSLEVISTVTGSCIA  211 (365)
T ss_dssp             EEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC----SSCEEEEETTTCCEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc----ceeEEEEEeccCccee
Confidence            468999999998754  478999999999999998886 667899999999999999998    5667778777776543


Q ss_pred             --ecccccccEEEEEEcCCCCEEEEcccCC----eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           97 --YFKGHHDRVVLLSLCSSKDCFISGSLDR----TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        97 --~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                        ....|...|.+++|+|+++++++++.|+    .++.|++.........                         ...+.
T Consensus       212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-------------------------~~~~~  266 (365)
T 4h5i_A          212 RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-------------------------SKQVT  266 (365)
T ss_dssp             EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-------------------------EEEEE
T ss_pred             eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-------------------------eeeec
Confidence              4456888999999999999999998887    6888887765432211                         12334


Q ss_pred             CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585          171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~  249 (304)
                      +|...|++++|+|+|++|++|+.|++|++||+++++++..+.  .+|...|++++|+|||++||+|+.|++|+|||+..
T Consensus       267 ~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~--~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          267 NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK--QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET--TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec--CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            678899999999999999999999999999999999887753  26899999999999999999999999999999954

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1e-36  Score=241.54  Aligned_cols=208  Identities=17%  Similarity=0.235  Sum_probs=171.6

Q ss_pred             eecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce--eeeecccccccEEEEEEcC--CCCEEEEcccCCeEE
Q 036585           52 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YSRYFKGHHDRVVLLSLCS--SKDCFISGSLDRTVL  127 (304)
Q Consensus        52 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~  127 (304)
                      .+.+|...|.+++|+|++++|++++.   |++|++||+.+++  .+..+.+|.++|.+++|+|  ++++|++++.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~---D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSS---DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEET---TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeC---CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence            45689999999999999999999998   9999999998764  4677889999999999986  488999999999999


Q ss_pred             EEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC--CcEEEEeeCCCeEEEEEcCCC
Q 036585          128 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSFRG  205 (304)
Q Consensus       128 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~  205 (304)
                      +||++++.....                           ..+.+|...|.+++|+|+  +.+|++++.||.|++||++++
T Consensus        85 iWd~~~~~~~~~---------------------------~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           85 IWREENGTWEKS---------------------------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             EECCSSSCCCEE---------------------------EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             EEECCCCcceEE---------------------------EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            999987642211                           123368889999999998  789999999999999999876


Q ss_pred             ceeEEEEeCCCCCCcceEEEEcCC-----------------CcEEEEecCCCcEEEEecCCC---ceeeeeeccCCCCce
Q 036585          206 TLLSTYNVKPVSRNSTLEASFSPE-----------------GMFVISGSGDGSVHAWSVRSG---KEVASWMSFDTEPPV  265 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~i~~~~~s~~-----------------~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~i~~  265 (304)
                      ...........|...+.+++|+|+                 +++|++|+.|+.|++||++..   +++..+.+|...|.+
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~  217 (316)
T 3bg1_A          138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD  217 (316)
T ss_dssp             SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEE
T ss_pred             CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEE
Confidence            433222233468889999999997                 478999999999999999755   456778899999999


Q ss_pred             EEeCCCC----cEEEEecCc--eEEeccCC
Q 036585          266 IKWAPGS----LMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       266 ~~~~~~~----~~l~s~~~d--~~iw~~~~  289 (304)
                      ++|+|++    .+|++++.|  ++||+.+.
T Consensus       218 v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          218 VAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             EECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             EEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence            9999987    889999999  99998864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.8e-35  Score=227.85  Aligned_cols=230  Identities=12%  Similarity=0.190  Sum_probs=174.3

Q ss_pred             EEEEeeCCCeEEEEecCCc---ceeeeecccccc-------------------------eeEEEEccC----CCeEEEEe
Q 036585           29 YLVTASDDESIRLYDVTAA---TCLKTINSKKYG-------------------------VDLVCFTSH----PTTVIYSS   76 (304)
Q Consensus        29 ~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~-------------------------v~~~~~~~~----~~~l~~~~   76 (304)
                      .+++++. ..|++|+..++   +.++++.+|..+                         |..++++|+    +..+++++
T Consensus        56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g  134 (356)
T 2w18_A           56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG  134 (356)
T ss_dssp             EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred             EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence            5677776 58999999988   778888777653                         556667777    66677655


Q ss_pred             c-----------------CCCCCceEEEEc-cCceeeeecccccccEEEEEEcC---CCCEEEEcccCCeEEEEeCCcce
Q 036585           77 K-----------------NGWDESLRLLSL-HDNKYSRYFKGHHDRVVLLSLCS---SKDCFISGSLDRTVLLWDQRAEK  135 (304)
Q Consensus        77 ~-----------------~~~d~~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~  135 (304)
                      .                 .+.|+.|++|++ .+++.+..+..|...+..++|+|   ++.+|++++.|++|++||+++++
T Consensus       135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk  214 (356)
T 2w18_A          135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ  214 (356)
T ss_dssp             EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC
T ss_pred             CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc
Confidence            3                 234888888888 44777777778888888888888   67899999999999999999999


Q ss_pred             eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEE------------EEeeCCCeEEEEEcC
Q 036585          136 CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLM------------LLTTMEGHIHVLDSF  203 (304)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l------------~~~~~dg~i~~~d~~  203 (304)
                      .+..+..+.                          .+...+.+++|+|+|+++            ++|+.|++|++||..
T Consensus       215 ~l~tL~g~~--------------------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~  268 (356)
T 2w18_A          215 LLKKMHIDD--------------------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK  268 (356)
T ss_dssp             EEEEEECCC-----------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT
T ss_pred             EEEEEcCCC--------------------------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence            888775221                          122467778999999876            557789999999999


Q ss_pred             CCceeEEEEe--CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCc-eEEeCCCCcEEEEecC
Q 036585          204 RGTLLSTYNV--KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPP-VIKWAPGSLMFVTGSS  280 (304)
Q Consensus       204 ~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~~  280 (304)
                      +++.+..+..  +.+|...+.+..+  ++.++++++.|++|+|||+.+++++.++.+|...+. +++|+|||++|++|+.
T Consensus       269 tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~  346 (356)
T 2w18_A          269 TTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK  346 (356)
T ss_dssp             TTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred             CCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence            9988776542  2244444444444  478999999999999999999999999999987665 5899999999999999


Q ss_pred             c--eEEecc
Q 036585          281 E--LSFWIP  287 (304)
Q Consensus       281 d--~~iw~~  287 (304)
                      |  |+||++
T Consensus       347 D~TIklWd~  355 (356)
T 2w18_A          347 DGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEEE
T ss_pred             CCcEEEecC
Confidence            9  999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.9e-35  Score=255.99  Aligned_cols=235  Identities=19%  Similarity=0.281  Sum_probs=204.0

Q ss_pred             eeeecccccceeEEEEccCC-CeEEEEecCCCCCceEEEEccCc-----eeeeecccccccEEEEEEcCCCCEEEEcccC
Q 036585           50 LKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHDN-----KYSRYFKGHHDRVVLLSLCSSKDCFISGSLD  123 (304)
Q Consensus        50 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  123 (304)
                      ...+.+|...|.+++|+|++ +.|++++.   |++|++|++.+.     .....+.+|...|.+++|+|++++|++++.|
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~---D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASR---DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEET---TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeC---CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            45678999999999999875 67889998   999999999763     3456788999999999999999999999999


Q ss_pred             CeEEEEeCCcceeeceEEEeccc--eeEecCCC--eEEEecCCCeEEEEec------------CCCCCceEEEEecCC--
Q 036585          124 RTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQG--LVFGYEKGPLDIFSVG------------GDISDANVVKFSNDG--  185 (304)
Q Consensus       124 g~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~--  185 (304)
                      ++|++||+.++.....+..+...  .+.+++++  .+.+..++.+++|+..            +|...|.+++|+|++  
T Consensus       452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            99999999999888777655443  46677776  5557788999999752            467789999999987  


Q ss_pred             cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCce
Q 036585          186 RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPV  265 (304)
Q Consensus       186 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~  265 (304)
                      ..+++++.|+.|++||+++++....+.   .|...|++++|+|++++|++|+.||.|++||+++++.+..+. +...|.+
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~---~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~  607 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCKLRSTLA---GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHA  607 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEE
T ss_pred             ceEEEEeCCCeEEEEECCCCcEEEEEc---CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEE
Confidence            579999999999999999998888877   789999999999999999999999999999999999888776 4567999


Q ss_pred             EEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585          266 IKWAPGSLMFVTGSSE-LSFWIPDLSK  291 (304)
Q Consensus       266 ~~~~~~~~~l~s~~~d-~~iw~~~~~~  291 (304)
                      ++|+|++.+|++++.+ ++||+++...
T Consensus       608 ~~~sp~~~~l~~~~~~~i~iwd~~~~~  634 (694)
T 3dm0_A          608 LCFSPNRYWLCAATEHGIKIWDLESKS  634 (694)
T ss_dssp             EEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred             EEEcCCCcEEEEEcCCCEEEEECCCCC
Confidence            9999999999988877 9999997654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-36  Score=251.12  Aligned_cols=263  Identities=11%  Similarity=0.179  Sum_probs=206.1

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecCCcceeeee-cccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEccC---cee-
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVTAATCLKTI-NSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHD---NKY-   94 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~---~~~-   94 (304)
                      ..+.++++.+++++      .|+ .+++.+..+ .+|...|.+++|+| ++++|++++.   |+.|++||+.+   +.. 
T Consensus        33 ~~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~---dg~v~vwd~~~~~~~~~~  102 (437)
T 3gre_A           33 KEFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSD---QGVIKIWNLKEIIVGEVY  102 (437)
T ss_dssp             GGGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEET---TSEEEEEEHHHHHTTCCC
T ss_pred             hhcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecC---CceEEEeECcccccCccc
Confidence            34667788877765      388 457888888 88999999999999 9999999998   99999999987   432 


Q ss_pred             --eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCC---cceeeceEEEeccceeE----------------ecCC
Q 036585           95 --SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR---AEKCQGLLRVQGRPAAA----------------YDDQ  153 (304)
Q Consensus        95 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~----------------~~~~  153 (304)
                        ...+ .|...|.+++|+|++++|++++.||.|++||++   +++............+.                ++++
T Consensus       103 ~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  181 (437)
T 3gre_A          103 SSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE  181 (437)
T ss_dssp             SCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred             ceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence              2223 589999999999999999999999999999995   44443333222111111                2233


Q ss_pred             C--eEEEecCCCeEEEEec---------C--CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCc
Q 036585          154 G--LVFGYEKGPLDIFSVG---------G--DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNS  220 (304)
Q Consensus       154 ~--~~~~~~~~~~~~~~~~---------~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  220 (304)
                      +  .+.+..++.+.+|++.         .  |...|++++|+|++++|++++.||.|++||+++++.+..+..  .+...
T Consensus       182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~  259 (437)
T 3gre_A          182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GDHAP  259 (437)
T ss_dssp             CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--TTCEE
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--CCCCc
Confidence            3  4446667788888753         3  678999999999999999999999999999999988887753  36678


Q ss_pred             ceEEEEc----CCCcEEEEecCCCcEEEEecCCCceeeeeec--------------------------cCCCCceEEeCC
Q 036585          221 TLEASFS----PEGMFVISGSGDGSVHAWSVRSGKEVASWMS--------------------------FDTEPPVIKWAP  270 (304)
Q Consensus       221 i~~~~~s----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--------------------------~~~~i~~~~~~~  270 (304)
                      |.+++|+    |++.+|++++.||.|++||+++++.+..+.+                          |...|++++|+ 
T Consensus       260 v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-  338 (437)
T 3gre_A          260 ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-  338 (437)
T ss_dssp             EEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-
T ss_pred             eEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-
Confidence            9999555    5688999999999999999999887776654                          44557888888 


Q ss_pred             CCcEEEEecCc--eEEeccCCcc-cccccc
Q 036585          271 GSLMFVTGSSE--LSFWIPDLSK-LGAYVG  297 (304)
Q Consensus       271 ~~~~l~s~~~d--~~iw~~~~~~-~~~~~~  297 (304)
                      ++++|++++.|  +++|++...+ +..+.+
T Consensus       339 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          339 NDKILLTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             CceEEEecCCCCeEEEEECCCcccceEEec
Confidence            77899999988  9999986544 444444

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.8e-36  Score=241.14  Aligned_cols=224  Identities=18%  Similarity=0.248  Sum_probs=189.6

Q ss_pred             eeEeeccc----CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEccCce
Q 036585           19 EILQSMEV----GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNK   93 (304)
Q Consensus        19 ~~i~~~~~----~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~~   93 (304)
                      ..+.++++    |++|++++.||.|++||+.+++.+..+.+|...|.+++|+| ++..|++++.   |+.|++||+.+++
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~  149 (366)
T 3k26_A           73 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK---DHALRLWNIQTDT  149 (366)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET---TSCEEEEETTTTE
T ss_pred             EEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC---CCeEEEEEeecCe
Confidence            44678888    67999999999999999999999999999999999999999 8999999998   9999999999999


Q ss_pred             eeeec---ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEE----------------------------
Q 036585           94 YSRYF---KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV----------------------------  142 (304)
Q Consensus        94 ~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------------  142 (304)
                      .+..+   ..|...|.+++|+|++++|++++.||.|++||+++++....+..                            
T Consensus       150 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T 3k26_A          150 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI  229 (366)
T ss_dssp             EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred             EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence            88887   68999999999999999999999999999999997765432211                            


Q ss_pred             --eccceeEecCCCeEEEecCCCeEEEEecC-----------------------CCCCceEEEEecC--CcEEEEeeCCC
Q 036585          143 --QGRPAAAYDDQGLVFGYEKGPLDIFSVGG-----------------------DISDANVVKFSND--GRLMLLTTMEG  195 (304)
Q Consensus       143 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~v~~~~~~~~--~~~l~~~~~dg  195 (304)
                        .....+.++++..+.+..++.+.+|++..                       |...|.+++|+|+  +++|++++.||
T Consensus       230 ~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg  309 (366)
T 3k26_A          230 HRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG  309 (366)
T ss_dssp             CSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred             CcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC
Confidence              11223455555556666778888887643                       5567889999999  99999999999


Q ss_pred             eEEEEEcCCCceeE----EEEeCCCC--CCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          196 HIHVLDSFRGTLLS----TYNVKPVS--RNSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       196 ~i~~~d~~~~~~~~----~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                      .|++||+++++...    .+.   .+  ...|++++|+|++++|++++.||.|++||+.
T Consensus       310 ~i~vwd~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          310 KLYVWDLEVEDPHKAKCTTLT---HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CEEEEECCSSSGGGCEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cEEEEECCCCCCccccceEEc---ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99999999876443    343   34  7899999999999999999999999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-35  Score=244.17  Aligned_cols=239  Identities=14%  Similarity=0.061  Sum_probs=201.7

Q ss_pred             eeeEeecccCcEE-EEeeCCCeEEEEecC--Ccceeeeec--ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc
Q 036585           18 EEILQSMEVGIYL-VTASDDESIRLYDVT--AATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   92 (304)
Q Consensus        18 ~~~i~~~~~~~~l-~~~~~d~~i~vw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~   92 (304)
                      ...+.++|+|++| ++++.||.|++||+.  +++.+..+.  .|...|.+++|+|++++|++++.   ++.|++|++.++
T Consensus       105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---~g~v~~~~~~~~  181 (450)
T 2vdu_B          105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK---FGDVYSIDINSI  181 (450)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET---TSEEEEEETTSC
T ss_pred             eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC---CCcEEEEecCCc
Confidence            4457889999996 899999999999999  888888887  45688999999999999999998   999999999887


Q ss_pred             eeee----ecccccccEEEEEEcCC---CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           93 KYSR----YFKGHHDRVVLLSLCSS---KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        93 ~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                      +...    .+.+|...|.+++|+|+   +++|++++.|+.|++||+++++....+                         
T Consensus       182 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-------------------------  236 (450)
T 2vdu_B          182 PEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW-------------------------  236 (450)
T ss_dssp             CCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE-------------------------
T ss_pred             ccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee-------------------------
Confidence            7554    77889999999999999   999999999999999999877654332                         


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC----------------------CCCCcceE
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP----------------------VSRNSTLE  223 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----------------------~~~~~i~~  223 (304)
                         +.+|...|.+++|+ ++++|++++.|+.|++||+++++.+..+....                      .....+..
T Consensus       237 ---~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          237 ---LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             ---CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             ---ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence               12577899999999 99999999999999999999999888876321                      23457889


Q ss_pred             EEEcCCCcEEEEec-CCCcEEEEec--CCC---ceeeeeeccCCCCceEEeCCCCcEEEEecC-------c-eEEeccCC
Q 036585          224 ASFSPEGMFVISGS-GDGSVHAWSV--RSG---KEVASWMSFDTEPPVIKWAPGSLMFVTGSS-------E-LSFWIPDL  289 (304)
Q Consensus       224 ~~~s~~~~~l~~~~-~dg~i~v~d~--~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-------d-~~iw~~~~  289 (304)
                      ++|+|++++|++++ .|+.|++|++  .++   +.+..+..| ..|.+++|+|++.++++++.       + +++|.++.
T Consensus       313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            99999999999998 8999999999  555   566777777 88999999997655555443       2 78997754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5e-35  Score=239.15  Aligned_cols=242  Identities=14%  Similarity=0.116  Sum_probs=204.1

Q ss_pred             eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce------eeeecccccccEEEEEEcCC----C---C
Q 036585           49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK------YSRYFKGHHDRVVLLSLCSS----K---D  115 (304)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~  115 (304)
                      ....+.+|...|.+++|+|  +.|++++.   |+.|++||+.+++      .+..+.+|...|.+++|+|+    +   +
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~   82 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSG---DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC   82 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEET---TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcC---CCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence            3466789999999999998  79999998   9999999999887      67888899999999999999    9   9


Q ss_pred             EEEEcccCCeEEEEeCCccee-----eceEEEe-------ccceeEec----CCCe---EEEecCCCeEEEEecC-----
Q 036585          116 CFISGSLDRTVLLWDQRAEKC-----QGLLRVQ-------GRPAAAYD----DQGL---VFGYEKGPLDIFSVGG-----  171 (304)
Q Consensus       116 ~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~-------~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~-----  171 (304)
                      +|++++.|+.|++||+.+++.     ...+...       ....+.+.    +++.   +.+..++.+.+|++..     
T Consensus        83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence            999999999999999988775     4444333       22346677    6654   3466788999998765     


Q ss_pred             ----------------------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCC---CCcceEEEE
Q 036585          172 ----------------------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS---RNSTLEASF  226 (304)
Q Consensus       172 ----------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---~~~i~~~~~  226 (304)
                                            |...+.+++|+|++ ++++++.||.|++||+++++.+..+.....|   ...+.+++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence                                  45668999999999 9999999999999999999999888831126   889999999


Q ss_pred             cCCCcEEEEecCC---CcEEEEecCCCceeeeeec-------------cCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          227 SPEGMFVISGSGD---GSVHAWSVRSGKEVASWMS-------------FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       227 s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      +|++++|++++.|   +.|++||+++++.+..+..             |...|.+++|+|++++|++++.|  +++|++.
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            9999999999999   9999999999999999988             99999999999999999999988  9999986


Q ss_pred             Ccc-ccccc
Q 036585          289 LSK-LGAYV  296 (304)
Q Consensus       289 ~~~-~~~~~  296 (304)
                      ..+ +..+.
T Consensus       322 ~~~~~~~~~  330 (397)
T 1sq9_A          322 TKERITTLN  330 (397)
T ss_dssp             TTEEEEEEE
T ss_pred             CCceeEEEe
Confidence            543 44454

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.8e-34  Score=229.23  Aligned_cols=260  Identities=12%  Similarity=0.153  Sum_probs=199.0

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      ..+.++|+|++|++|+.++ +++|++++++.......  ..+..+++.++++.++..+..  |+.|++||+.+++.+..+
T Consensus        23 ~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--d~~v~iWd~~~~~~~~~~   97 (355)
T 3vu4_A           23 TDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV--KEVVHIWDDVKKQDVSRI   97 (355)
T ss_dssp             CEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS--TTEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC--ccEEEEEECCCCcEEEEE
Confidence            3578999999999998775 88999988776655433  258889999999888654432  899999999999998888


Q ss_pred             ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcc-eeeceEEEeccceeEecCCCeEE--EecCCCeEEEEe------
Q 036585           99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVF--GYEKGPLDIFSV------  169 (304)
Q Consensus        99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------  169 (304)
                      . +...|.++.|+++.  ++++ .|+.|++||+.+. +....+.. .....++++...++  +..++.+.+|++      
T Consensus        98 ~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~  172 (355)
T 3vu4_A           98 K-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSA  172 (355)
T ss_dssp             E-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-EEEEEEEETTEEEEEESSCTTCEEEEECCC----
T ss_pred             E-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-CCceEEEEccEEEEeCCCcCcEEEEEECCCCCcc
Confidence            7 67799999998764  3333 4789999999988 66555544 22233344433333  244555655554      


Q ss_pred             -------------------cCCCCCceEEEEecCCcEEEEeeCCCe-EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585          170 -------------------GGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  229 (304)
Q Consensus       170 -------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~  229 (304)
                                         .+|...|.+++|+|+|++|++++.||+ |++||+++++.+..+... .|...|.+++|+|+
T Consensus       173 ~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g-~h~~~v~~~~~s~~  251 (355)
T 3vu4_A          173 TTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG-LDRADVVDMKWSTD  251 (355)
T ss_dssp             --------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT-TCCSCEEEEEECTT
T ss_pred             ccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC-CCCCcEEEEEECCC
Confidence                               457889999999999999999999998 999999999999888721 27789999999999


Q ss_pred             CcEEEEecCCCcEEEEecCCCcee--eee---------------------eccCCCCceEEeCCCCcEEEEecCc--eEE
Q 036585          230 GMFVISGSGDGSVHAWSVRSGKEV--ASW---------------------MSFDTEPPVIKWAPGSLMFVTGSSE--LSF  284 (304)
Q Consensus       230 ~~~l~~~~~dg~i~v~d~~~~~~~--~~~---------------------~~~~~~i~~~~~~~~~~~l~s~~~d--~~i  284 (304)
                      +++|++++.|+.|++||++.....  ..+                     .....+...++|+|+++++++++.|  +++
T Consensus       252 ~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~  331 (355)
T 3vu4_A          252 GSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIET  331 (355)
T ss_dssp             SCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEE
T ss_pred             CCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEE
Confidence            999999999999999999765321  111                     0112234779999999999999988  777


Q ss_pred             eccCC
Q 036585          285 WIPDL  289 (304)
Q Consensus       285 w~~~~  289 (304)
                      |++..
T Consensus       332 ~~~~~  336 (355)
T 3vu4_A          332 FKVVF  336 (355)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            87643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-35  Score=241.17  Aligned_cols=235  Identities=11%  Similarity=0.056  Sum_probs=186.9

Q ss_pred             eecceeeEeecccCcEEEEeeCCCeEEEEecCCc-----------------------------ceeeeec-ccccceeEE
Q 036585           14 LELSEEILQSMEVGIYLVTASDDESIRLYDVTAA-----------------------------TCLKTIN-SKKYGVDLV   63 (304)
Q Consensus        14 ~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~-----------------------------~~~~~~~-~~~~~v~~~   63 (304)
                      ++.-...+.++|||+++|+++.|++|+  |.+.+                             +....+. .|...|.++
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~v   91 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVC   91 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEE
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEE
Confidence            344556799999999999999999995  33322                             2111222 456789999


Q ss_pred             EEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccc-----cEEEEEEcCCCCEEEEcccCCeEEEEeCCccee--
Q 036585           64 CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHD-----RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC--  136 (304)
Q Consensus        64 ~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--  136 (304)
                      +|+|+|+.|++++.   ||.|++||.++  .+..+. |..     .+.+++|+|+|++|++|+.||+|++||+.++..  
T Consensus        92 awSPdG~~LAs~s~---dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~  165 (588)
T 2j04_A           92 KPSPIDDWMAVLSN---NGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENT  165 (588)
T ss_dssp             EECSSSSCEEEEET---TSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTC
T ss_pred             EECCCCCEEEEEeC---CCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccc
Confidence            99999999999998   99999999654  566666 665     499999999999999999999999999987642  


Q ss_pred             -----eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCcee---
Q 036585          137 -----QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL---  208 (304)
Q Consensus       137 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---  208 (304)
                           ...+...                         ..+|...|.+++|+|+|  +++++.|+.|++||+.+++..   
T Consensus       166 ~~~i~l~ti~~~-------------------------~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~  218 (588)
T 2j04_A          166 PEFYFESSIRLS-------------------------DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVS  218 (588)
T ss_dssp             CCCEEEEEEECS-------------------------CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCE
T ss_pred             ccceeeeeeecc-------------------------cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccce
Confidence                 1111111                         13577899999999999  888999999999999887743   


Q ss_pred             EEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEe--CCCCcEEEEecCc-eEEe
Q 036585          209 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKW--APGSLMFVTGSSE-LSFW  285 (304)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~d-~~iw  285 (304)
                      .++..  .|...|.+++|+  +++||+++ ++.|++||+.+++......+|...+..++|  +|++..+++++++ .++|
T Consensus       219 ~tL~~--~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw  293 (588)
T 2j04_A          219 RMIQN--ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVL  293 (588)
T ss_dssp             EEEEC--CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEE
T ss_pred             eeecc--cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEE
Confidence            34421  477899999999  68999887 699999999887763333389999999999  9999999999988 5599


Q ss_pred             ccC
Q 036585          286 IPD  288 (304)
Q Consensus       286 ~~~  288 (304)
                      ..+
T Consensus       294 ~~d  296 (588)
T 2j04_A          294 LED  296 (588)
T ss_dssp             ESS
T ss_pred             eec
Confidence            876

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.9e-34  Score=237.55  Aligned_cols=265  Identities=19%  Similarity=0.315  Sum_probs=214.4

Q ss_pred             ceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEc--cCCCeEEEEecCCCCCce
Q 036585           10 DKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT--SHPTTVIYSSKNGWDESL   84 (304)
Q Consensus        10 ~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~~~d~~i   84 (304)
                      ....+.+|...   +.+++++ +|++|+.||+|++||+++++.+..+.+|...|.+++|+  ++++.+++++.   |+.|
T Consensus       154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~---d~~i  229 (464)
T 3v7d_B          154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR---DNTL  229 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEET---TSCE
T ss_pred             EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcC---CCcE
Confidence            34455566555   4455566 99999999999999999999999999999999999999  47788999998   9999


Q ss_pred             EEEEccCcee-----------------------eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEE
Q 036585           85 RLLSLHDNKY-----------------------SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR  141 (304)
Q Consensus        85 ~vwd~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  141 (304)
                      ++||+.+++.                       +..+.+|...+.++  +++++++++++.|+.|++||+++++....+.
T Consensus       230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  307 (464)
T 3v7d_B          230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS  307 (464)
T ss_dssp             EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence            9999987652                       44567788888877  5678899999999999999999988877765


Q ss_pred             Eeccc--eeEecCCC--eEEEecCCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCcee
Q 036585          142 VQGRP--AAAYDDQG--LVFGYEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  208 (304)
Q Consensus       142 ~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  208 (304)
                      .+...  .+.+++++  .+.+..++.+++|++.         +|...|.+++|+  +++|++++.||.|++||+++++..
T Consensus       308 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~  385 (464)
T 3v7d_B          308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK  385 (464)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee
Confidence            44333  45677765  4556777888888764         578899999997  579999999999999999998877


Q ss_pred             EEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeee-eeccCCCCceEEeCCCCcEEEEecCc--eEEe
Q 036585          209 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS-WMSFDTEPPVIKWAPGSLMFVTGSSE--LSFW  285 (304)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw  285 (304)
                      ....    +...+..++|+|+++++++++ ||.|++||+++++.+.. +..|...|.+++|+ +..++++++.+  +.+|
T Consensus       386 ~~~~----~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          386 FSYH----HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             EEEE----CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             eeec----CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            6665    667788899999999999998 89999999999999876 57789999999997 34455555555  4444


Q ss_pred             ccC
Q 036585          286 IPD  288 (304)
Q Consensus       286 ~~~  288 (304)
                      .++
T Consensus       460 ~ld  462 (464)
T 3v7d_B          460 ILD  462 (464)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-34  Score=234.77  Aligned_cols=213  Identities=16%  Similarity=0.276  Sum_probs=181.4

Q ss_pred             cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc--CceeeeecccccccEEEEEEcCC--CCEEEEccc
Q 036585           47 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH--DNKYSRYFKGHHDRVVLLSLCSS--KDCFISGSL  122 (304)
Q Consensus        47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~  122 (304)
                      |+++..+.+|...|.+++|+|++++|++++.   |+.|++||+.  +++.+..+.+|...|.+++|+|+  +++|++++.
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   77 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSS---DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   77 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEET---TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEEC---CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence            3567788999999999999999999999998   9999999998  66777888999999999999977  899999999


Q ss_pred             CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC--CcEEEEeeCCCeEEEE
Q 036585          123 DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVL  200 (304)
Q Consensus       123 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~  200 (304)
                      ||.|++||+++++.....                           .+..|...|.+++|+|+  +.+|++++.||.|++|
T Consensus        78 dg~v~iwd~~~~~~~~~~---------------------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~  130 (379)
T 3jrp_A           78 DGKVLIWKEENGRWSQIA---------------------------VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV  130 (379)
T ss_dssp             TSCEEEEEEETTEEEEEE---------------------------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred             CCEEEEEEcCCCceeEee---------------------------eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEE
Confidence            999999999887532222                           22357788999999999  9999999999999999


Q ss_pred             EcCCCceeEEEEeCCCCCCcceEEEEcC-------------CCcEEEEecCCCcEEEEecCCCc----eeeeeeccCCCC
Q 036585          201 DSFRGTLLSTYNVKPVSRNSTLEASFSP-------------EGMFVISGSGDGSVHAWSVRSGK----EVASWMSFDTEP  263 (304)
Q Consensus       201 d~~~~~~~~~~~~~~~~~~~i~~~~~s~-------------~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~i  263 (304)
                      |++++......... .+...+.+++|+|             ++.+|++++.|+.|++||+++++    ....+.+|..+|
T Consensus       131 d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v  209 (379)
T 3jrp_A          131 EFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV  209 (379)
T ss_dssp             ECCTTSCCCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred             ecCCCCceeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE
Confidence            99887443333221 5888999999999             69999999999999999998765    345677899999


Q ss_pred             ceEEeCCC---CcEEEEecCc--eEEeccCCc
Q 036585          264 PVIKWAPG---SLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       264 ~~~~~~~~---~~~l~s~~~d--~~iw~~~~~  290 (304)
                      .+++|+|+   +.+|++++.|  +++|+++..
T Consensus       210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             EEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            99999999   8999999998  999998764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=258.19  Aligned_cols=238  Identities=11%  Similarity=0.179  Sum_probs=192.1

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ...+.++|++++||+|+.||.|+||+..+.+....+. |..+|.+++|+| +++|++++.   |+.|++||+.+++.+..
T Consensus        20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~---D~~v~lWd~~~~~~~~~   94 (902)
T 2oaj_A           20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINA---KDTVYVLSLYSQKVLTT   94 (902)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEET---TCEEEEEETTTCSEEEE
T ss_pred             cEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEEC---cCeEEEEECCCCcEEEE
Confidence            3467899999999999999999999998877665554 778999999999 889999998   99999999999998888


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      +. |...|++++|+|+++++++|+.||.|++||+++++.. .+........                 .....+|...|.
T Consensus        95 ~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~-----------------~~~~~~h~~~V~  155 (902)
T 2oaj_A           95 VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKS-----------------SFFPAARLSPIV  155 (902)
T ss_dssp             EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHH-----------------HTCSSSCCCCCC
T ss_pred             Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceecccccc-----------------ccccccCCCCeE
Confidence            86 7789999999999999999999999999999987653 1211000000                 001236888999


Q ss_pred             EEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeC---------------CCCCCcceEEEEcCCCcEEEEecCCCc
Q 036585          178 VVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVK---------------PVSRNSTLEASFSPEGMFVISGSGDGS  241 (304)
Q Consensus       178 ~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---------------~~~~~~i~~~~~s~~~~~l~~~~~dg~  241 (304)
                      +++|+|+ +..+++|+.||.| +||+++++....+..+               ..|...|++++|+|+|++|++++.||.
T Consensus       156 sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~  234 (902)
T 2oaj_A          156 SIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS  234 (902)
T ss_dssp             EEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred             EEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence            9999996 5789999999999 9999999888877632               123467999999999999999999999


Q ss_pred             EEEEecCCCceeee--e---ec-------------cCCCCceEEeC----CCC-cEEEEecC
Q 036585          242 VHAWSVRSGKEVAS--W---MS-------------FDTEPPVIKWA----PGS-LMFVTGSS  280 (304)
Q Consensus       242 i~v~d~~~~~~~~~--~---~~-------------~~~~i~~~~~~----~~~-~~l~s~~~  280 (304)
                      |++||+++++++..  +   ..             |..+|++++|+    |++ .+|++|+.
T Consensus       235 i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred             EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence            99999999887653  2   12             34579999995    554 56777754

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.2e-34  Score=235.83  Aligned_cols=220  Identities=14%  Similarity=0.159  Sum_probs=185.9

Q ss_pred             EecCCcceeeeecccccceeEEEEccCC-CeEEEEecCCCCCceEEEEccCceeeeecc--cccccEEEEEEcC-CCCEE
Q 036585           42 YDVTAATCLKTINSKKYGVDLVCFTSHP-TTVIYSSKNGWDESLRLLSLHDNKYSRYFK--GHHDRVVLLSLCS-SKDCF  117 (304)
Q Consensus        42 w~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l  117 (304)
                      |++.+.+....+.+|...|.+++|+|++ ++|++++.   |+.|++||+.+++....+.  +|...|.+++|+| ++++|
T Consensus        58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  134 (383)
T 3ei3_B           58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSK---GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQL  134 (383)
T ss_dssp             HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEB---TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEE
T ss_pred             ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcC---CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEE
Confidence            3445566777888999999999999999 89999998   9999999999887766655  6999999999999 77899


Q ss_pred             EEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeE
Q 036585          118 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHI  197 (304)
Q Consensus       118 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  197 (304)
                      ++++.|+.|++||++.. ....+...                          ..+...+.+++|+|++++|++++.||.|
T Consensus       135 ~s~~~d~~i~iwd~~~~-~~~~~~~~--------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i  187 (383)
T 3ei3_B          135 FVSSIRGATTLRDFSGS-VIQVFAKT--------------------------DSWDYWYCCVDVSVSRQMLATGDSTGRL  187 (383)
T ss_dssp             EEEETTTEEEEEETTSC-EEEEEECC--------------------------CCSSCCEEEEEEETTTTEEEEEETTSEE
T ss_pred             EEEeCCCEEEEEECCCC-ceEEEecc--------------------------CCCCCCeEEEEECCCCCEEEEECCCCCE
Confidence            99999999999999853 22222211                          1345789999999999999999999999


Q ss_pred             EEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc-EEEEecCCCcEEEEecCC----CceeeeeeccCCCCceEEeCC-C
Q 036585          198 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGSGDGSVHAWSVRS----GKEVASWMSFDTEPPVIKWAP-G  271 (304)
Q Consensus       198 ~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~i~~~~~~~-~  271 (304)
                      ++||+ +++.+..+.   .|...|.+++|+|+++ +|++++.|+.|++||+++    +..+..+ +|...|++++|+| +
T Consensus       188 ~i~d~-~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~  262 (383)
T 3ei3_B          188 LLLGL-DGHEIFKEK---LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTD  262 (383)
T ss_dssp             EEEET-TSCEEEEEE---CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTT
T ss_pred             EEEEC-CCCEEEEec---cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCC
Confidence            99998 577777777   6889999999999999 999999999999999987    5555555 6999999999999 9


Q ss_pred             CcEEEEecCc--eEEeccCCcc-ccccc
Q 036585          272 SLMFVTGSSE--LSFWIPDLSK-LGAYV  296 (304)
Q Consensus       272 ~~~l~s~~~d--~~iw~~~~~~-~~~~~  296 (304)
                      +.+|++++.|  +++|++...+ +..+.
T Consensus       263 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          263 STKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             SCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCccccccc
Confidence            9999999988  9999986543 34443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.9e-34  Score=254.15  Aligned_cols=239  Identities=14%  Similarity=0.165  Sum_probs=212.8

Q ss_pred             ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEE
Q 036585           48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL  127 (304)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  127 (304)
                      +..+.+.+|...|.+++|+|++++|++++.   ||.|++||+.+++.+..+.+|..+|.+++|+|++++|++++.||.|+
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~---~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~   80 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLY---SGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEET---TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeC---CCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence            456778899999999999999999999998   99999999999999999999999999999999999999999999999


Q ss_pred             EEeCCcceeeceEEEecc--ceeEecCCC--eEEEecCCCeEEEEec----------CCCCCceEEEEec-CCcEEEEee
Q 036585          128 LWDQRAEKCQGLLRVQGR--PAAAYDDQG--LVFGYEKGPLDIFSVG----------GDISDANVVKFSN-DGRLMLLTT  192 (304)
Q Consensus       128 iwd~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~-~~~~l~~~~  192 (304)
                      +||+.+++....+..+..  ..+.+++++  .+.+..++.+.+|++.          +|...+.+++|+| ++..+++++
T Consensus        81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence            999999988877765443  356788887  4456677888888764          3678899999999 899999999


Q ss_pred             CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC--CCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCC
Q 036585          193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP--EGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAP  270 (304)
Q Consensus       193 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~  270 (304)
                      .||.|++||+.+++....+..  .+...+..++|+|  ++++|++++.||.|++||+.+++.+..+.+|...|++++|+|
T Consensus       161 ~dg~v~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~  238 (814)
T 3mkq_A          161 LDRTVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP  238 (814)
T ss_dssp             TTSEEEEEETTCSSCSEEEEC--CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred             CCCeEEEEECCCCcceeEEec--CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence            999999999998888777763  2448899999999  999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCc--eEEeccCCcc
Q 036585          271 GSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       271 ~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      ++++|++++.|  +++|+....+
T Consensus       239 ~~~~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          239 TLPIIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCc
Confidence            99999999988  9999987543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.3e-35  Score=243.97  Aligned_cols=208  Identities=15%  Similarity=0.155  Sum_probs=170.9

Q ss_pred             eeeeecccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEccCcee--eeecccccccEEEEEEcC-CCCEEEEcccCC
Q 036585           49 CLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKY--SRYFKGHHDRVVLLSLCS-SKDCFISGSLDR  124 (304)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg  124 (304)
                      .......|...|++++|+| +++.|++|+.   ||.|+|||+.+++.  ...+.+|.+.|++++|+| ++++|++++.||
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~---dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~  187 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSK---GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG  187 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEET---TSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeC---CCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence            3445567888899999999 5668999998   99999999987654  345568999999999998 688999999999


Q ss_pred             eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585          125 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       125 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  204 (304)
                      +|++||+++.........                           ..+...+.+++|+|++++|++|+.||.|++||++.
T Consensus       188 ~v~iwd~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~  240 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASS---------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG  240 (435)
T ss_dssp             CEEEEETTSCEEEEEECC---------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS
T ss_pred             EEEEeeccCCceeEEecc---------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc
Confidence            999999986543221110                           12345678899999999999999999999999864


Q ss_pred             CceeEEEEeCCCCCCcceEEEEcCCCc-EEEEecCCCcEEEEecCCCceeee---eeccCCCCceEEeCCCCcEEEEecC
Q 036585          205 GTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGSGDGSVHAWSVRSGKEVAS---WMSFDTEPPVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~s~~~  280 (304)
                       +.+..+.   .|...|++++|+|++. +|++++.|+.|++||+++.+....   ..+|..+|++++|+|++.+|++++.
T Consensus       241 -~~~~~~~---~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~  316 (435)
T 4e54_B          241 -KELWNLR---MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ  316 (435)
T ss_dssp             -CBCCCSB---CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred             -ceeEEEe---cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC
Confidence             4444554   6889999999999876 788999999999999988765433   3679999999999999999999999


Q ss_pred             c--eEEeccCCc
Q 036585          281 E--LSFWIPDLS  290 (304)
Q Consensus       281 d--~~iw~~~~~  290 (304)
                      |  ++||+....
T Consensus       317 D~~i~iwd~~~~  328 (435)
T 4e54_B          317 KSEIRVYSASQW  328 (435)
T ss_dssp             SSCEEEEESSSS
T ss_pred             CCEEEEEECCCC
Confidence            9  999998653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.8e-33  Score=232.62  Aligned_cols=261  Identities=12%  Similarity=0.169  Sum_probs=214.9

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceee-----eecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLK-----TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      .+.+++++.++++++.++.|++||+.+++...     .+.+|...+.+++|+|++..+++++.   |+.|++||+.+++.
T Consensus       127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~v~~~d~~~~~~  203 (433)
T 3bws_A          127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ---ANAVHVFDLKTLAY  203 (433)
T ss_dssp             CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG---GTEEEEEETTTCCE
T ss_pred             EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC---CCEEEEEECCCceE
Confidence            47788878888888899999999999998877     45578889999999999999999988   99999999999998


Q ss_pred             eeecccccccEEEEEEcCCCCEEE-EcccCCeEEEEeCCcceeeceEEEec-cceeEecCCCeEE--Ee--------cCC
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVF--GY--------EKG  162 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~--------~~~  162 (304)
                      +..+..|...+.+++|+|+++.++ +++.|+.|++||+++++....+.... ...+.+++++..+  +.        .++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg  283 (433)
T 3bws_A          204 KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGG  283 (433)
T ss_dssp             EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCE
T ss_pred             EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCC
Confidence            888888999999999999999875 55589999999999887766554432 2356778877332  22        255


Q ss_pred             CeEEEEecC--------CCCCceEEEEecCCcEE-EEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEE
Q 036585          163 PLDIFSVGG--------DISDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  233 (304)
Q Consensus       163 ~~~~~~~~~--------~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  233 (304)
                      .+.+|++..        +...+..++|+|+++.+ ++++.++.|++||+.+++....+.    +...+.+++|+|++++|
T Consensus       284 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l  359 (433)
T 3bws_A          284 RLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP----VFDKPNTIALSPDGKYL  359 (433)
T ss_dssp             EEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEE
T ss_pred             eEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec----CCCCCCeEEEcCCCCEE
Confidence            777887653        24567889999999755 556889999999999998887776    56778999999999988


Q ss_pred             EEecC---------------CCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecC-c--eEEeccC
Q 036585          234 ISGSG---------------DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSS-E--LSFWIPD  288 (304)
Q Consensus       234 ~~~~~---------------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d--~~iw~~~  288 (304)
                      ++++.               ||.|++||+.+++.+..+.. ...+.+++|+|++++|++++. |  +++|+++
T Consensus       360 ~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             EEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            88765               57999999999998888875 457899999999999987764 5  9999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=223.75  Aligned_cols=243  Identities=14%  Similarity=0.137  Sum_probs=201.7

Q ss_pred             cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeE
Q 036585           47 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTV  126 (304)
Q Consensus        47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  126 (304)
                      .+....+.+|...|.+++| |++++|++++.   ||.|++||+.+++....+..|...|.+++|+|+++++++++.|+.+
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~---dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i   83 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSR---DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI   83 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEET---TSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEc---CCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence            4677889999999999999 99999999998   9999999999999889999999999999999999999999999999


Q ss_pred             EEEeCCcce---eeceEEEeccc--eeEecCCCeEEEecCCCeEEEE-------ecCCCCCceEEEEec-CCcEEEEeeC
Q 036585          127 LLWDQRAEK---CQGLLRVQGRP--AAAYDDQGLVFGYEKGPLDIFS-------VGGDISDANVVKFSN-DGRLMLLTTM  193 (304)
Q Consensus       127 ~iwd~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~-~~~~l~~~~~  193 (304)
                      ++|++....   ....+..+...  .+.++++..+.+..++.+.+|+       +..|...+.+++|.| +++++++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  163 (313)
T 3odt_A           84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASA  163 (313)
T ss_dssp             EEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred             EEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence            999987653   23333222222  3455555566677777777775       345888999999998 8999999999


Q ss_pred             CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCc
Q 036585          194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL  273 (304)
Q Consensus       194 dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  273 (304)
                      ||.|++||  ..+....+..  .+...+.+++|+|++. +++++.||.|++||+++++++..+..|..+|++++|+|++ 
T Consensus       164 d~~i~i~d--~~~~~~~~~~--~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-  237 (313)
T 3odt_A          164 DKTIKLWQ--NDKVIKTFSG--IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-  237 (313)
T ss_dssp             TSCEEEEE--TTEEEEEECS--SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-
T ss_pred             CCCEEEEe--cCceEEEEec--cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-
Confidence            99999999  4455555542  3788999999999998 8899999999999999999999999999999999999999 


Q ss_pred             EEEEecCc--eEEeccCCcc-ccccccCC
Q 036585          274 MFVTGSSE--LSFWIPDLSK-LGAYVGRN  299 (304)
Q Consensus       274 ~l~s~~~d--~~iw~~~~~~-~~~~~~~~  299 (304)
                      .|++++.|  +++|++...+ +..+..|.
T Consensus       238 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  266 (313)
T 3odt_A          238 DIVSCGEDRTVRIWSKENGSLKQVITLPA  266 (313)
T ss_dssp             CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred             CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence            57778877  9999986554 34444444

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.2e-32  Score=224.66  Aligned_cols=254  Identities=13%  Similarity=0.102  Sum_probs=207.9

Q ss_pred             cEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEE-EEecCCCCCceEEEEccCceeeeecccccccEE
Q 036585           28 IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVI-YSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV  106 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  106 (304)
                      .++++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++.++ +++.   |+.|++||+.+++.+..+..+. .+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~---d~~i~v~d~~~~~~~~~~~~~~-~v~   77 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAH---SNDVSIIDTATNNVIATVPAGS-SPQ   77 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGG---GTEEEEEETTTTEEEEEEECSS-SEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCC---CCeEEEEECCCCeEEEEEECCC-Ccc
Confidence            467888999999999999999999888776 589999999999875 5545   9999999999999888887554 899


Q ss_pred             EEEEcCCCCEEE-EcccCCeEEEEeCCcceeeceEEEecc-ceeEecCCCeE---EEecCCCeEEEEecC--------CC
Q 036585          107 LLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLV---FGYEKGPLDIFSVGG--------DI  173 (304)
Q Consensus       107 ~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~--------~~  173 (304)
                      +++|+|++++++ +++.++.|++||+++++....+..... ..+.+++++..   ....++.+.+|++..        ..
T Consensus        78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  157 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence            999999999775 555679999999999888776664433 35678888742   344567788887643        23


Q ss_pred             CCceEEEEecCCcEE-EEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec---CCCcEEEEecCC
Q 036585          174 SDANVVKFSNDGRLM-LLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVHAWSVRS  249 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~v~d~~~  249 (304)
                      ..+..++|+|+++.+ ++++.++.|++||+++++....+.    +...+.+++|+|++++|++++   .++.|++||+++
T Consensus       158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence            556899999999887 567788999999999998887776    456789999999999999887   689999999999


Q ss_pred             CceeeeeeccCCCCceEEeCCCCcEE-EEecCc--eEEeccCCcc
Q 036585          250 GKEVASWMSFDTEPPVIKWAPGSLMF-VTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       250 ~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~d--~~iw~~~~~~  291 (304)
                      ++.+..+..|. .+.+++|+|+++++ ++++.|  +++|+.+..+
T Consensus       234 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          234 NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence            99888887664 57899999999877 565666  9999987544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=227.79  Aligned_cols=235  Identities=12%  Similarity=0.188  Sum_probs=189.0

Q ss_pred             eeecccccceeEEEEccCCCeEEEEecC-CCCCceEEEEccCceeeeec-ccccccEEEEEEcCC---CCEEEEcccCCe
Q 036585           51 KTINSKKYGVDLVCFTSHPTTVIYSSKN-GWDESLRLLSLHDNKYSRYF-KGHHDRVVLLSLCSS---KDCFISGSLDRT  125 (304)
Q Consensus        51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~dg~  125 (304)
                      ..+.+|...|.+++|+|++..+++++.. ..|+.|++||+.+++..... .+|..+|.+++|+|+   +++|++++.||.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            3456799999999999999877665531 01899999999988765443 368999999999998   699999999999


Q ss_pred             EEEEeCCcce-eeceEEEeccce--e------EecCCC--eEEEecCCCeEEEEecCCC--------------CCceEEE
Q 036585          126 VLLWDQRAEK-CQGLLRVQGRPA--A------AYDDQG--LVFGYEKGPLDIFSVGGDI--------------SDANVVK  180 (304)
Q Consensus       126 i~iwd~~~~~-~~~~~~~~~~~~--~------~~~~~~--~~~~~~~~~~~~~~~~~~~--------------~~v~~~~  180 (304)
                      |++||+++++ ....+..+....  +      ++++++  .+.+..++.+.+|++....              ..+.+++
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA  171 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence            9999999887 555554443332  2      234554  4556778899999876432              2677777


Q ss_pred             ----EecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC---CCcEEEEecCCCcEEEEecCCCcee
Q 036585          181 ----FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP---EGMFVISGSGDGSVHAWSVRSGKEV  253 (304)
Q Consensus       181 ----~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~v~d~~~~~~~  253 (304)
                          |+|+++++++++.||.|++||+++++......    +...+.+++|+|   ++++|++++.||.|++||+++++.+
T Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  247 (357)
T 3i2n_A          172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN----IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT  247 (357)
T ss_dssp             EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred             EEeccCCCCCEEEEEccCCeEEEEECccCceeeecC----CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence                78999999999999999999999988765544    788999999999   9999999999999999999887765


Q ss_pred             eeee-----ccCCCCceEEeCCCCc-EEEEecCc--eEEeccCC
Q 036585          254 ASWM-----SFDTEPPVIKWAPGSL-MFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       254 ~~~~-----~~~~~i~~~~~~~~~~-~l~s~~~d--~~iw~~~~  289 (304)
                      ..+.     +|...|++++|+|+++ +|++++.|  +++|+++.
T Consensus       248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            5554     8999999999999998 89999988  99999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.1e-33  Score=223.75  Aligned_cols=238  Identities=14%  Similarity=0.165  Sum_probs=177.3

Q ss_pred             EEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEE-EE
Q 036585           41 LYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF-IS  119 (304)
Q Consensus        41 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~  119 (304)
                      +|++.+.+++..+..|...|.+++|+|++++|++++.   + .+++|++.+++......  ...+..+++.++++.+ ++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~---~-~~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   76 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTL---K-SFEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFV   76 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECS---S-EEEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcC---C-EEEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEE
Confidence            5667777777788899999999999999999999884   4 58899998877655433  2357778888888876 56


Q ss_pred             cccCCeEEEEeCCcceeeceEEEecc-ceeEecCCCeEEEecCCCeEEEEecCCCC-------CceEEEEecCCcEEEE-
Q 036585          120 GSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFGYEKGPLDIFSVGGDIS-------DANVVKFSNDGRLMLL-  190 (304)
Q Consensus       120 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~-  190 (304)
                      ++.|++|++||+++++....+..... ..+.++++..++. .++.+.+|++.....       ....+++++  .++++ 
T Consensus        77 ~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~  153 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYS  153 (355)
T ss_dssp             CSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEE
T ss_pred             ECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEe
Confidence            78889999999999988877764432 2455666665554 467899998875411       223455666  55555 


Q ss_pred             -eeCCCeEEEEEcCCCc----------------eeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCc-EEEEecCCCce
Q 036585          191 -TTMEGHIHVLDSFRGT----------------LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS-VHAWSVRSGKE  252 (304)
Q Consensus       191 -~~~dg~i~~~d~~~~~----------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~v~d~~~~~~  252 (304)
                       |+.+|.|++||+++++                ....+.   .|...|++++|+|++++|++|+.|++ |++||++++++
T Consensus       154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~---~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~  230 (355)
T 3vu4_A          154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK---AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL  230 (355)
T ss_dssp             ESSCTTCEEEEECCC------------------CCEEEC---CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred             CCCcCcEEEEEECCCCCccccccccccccccCcccEEEE---ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence             6899999999998765                144444   78999999999999999999999998 99999999999


Q ss_pred             eeeee-c-cCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          253 VASWM-S-FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       253 ~~~~~-~-~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      +..+. + |..+|++++|+|++++|++++.|  +++|+++..
T Consensus       231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            99997 5 99999999999999999999999  999998654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.5e-33  Score=227.93  Aligned_cols=242  Identities=14%  Similarity=0.187  Sum_probs=190.5

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc-eeeee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-KYSRY   97 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~-~~~~~   97 (304)
                      ..+.|+++|++||+|+.||.|++||+++++.+..+.+|...+.++++  ++..+++++.   |+.+++||.... ..+..
T Consensus       151 ~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~---d~~i~~~d~~~~~~~~~~  225 (420)
T 4gga_A          151 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSR---SGHIHHHDVRVAEHHVAT  225 (420)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEET---TSEEEEEETTSSSCEEEE
T ss_pred             EEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeC---CCceeEeeecccceeeEE
Confidence            45889999999999999999999999999999999999999988877  5788999998   999999998864 45677


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece----EEEec--cceeEecCCC--eE-E--EecCCCeEE
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL----LRVQG--RPAAAYDDQG--LV-F--GYEKGPLDI  166 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~--~~~~~~~~~~--~~-~--~~~~~~~~~  166 (304)
                      +.+|...+..+.|+|+++++++++.|+.+++|+..+++....    .....  ...+.+.+.+  .+ .  +..++.+++
T Consensus       226 ~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i  305 (420)
T 4gga_A          226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI  305 (420)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred             ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence            889999999999999999999999999999999987654321    11111  2234555543  22 2  235678888


Q ss_pred             EEecC--------CCCCceEEEEecCCcEEEEee--CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585          167 FSVGG--------DISDANVVKFSNDGRLMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       167 ~~~~~--------~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                      |++..        +...+.++.|+|+++.+++++  .|+.|++||+.+++++.++.   +|...|++++|+|||++|++|
T Consensus       306 wd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~---gH~~~V~~l~~spdg~~l~S~  382 (420)
T 4gga_A          306 WNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK---GHTSRVLSLTMSPDGATVASA  382 (420)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSCEEEE
T ss_pred             EeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEE
Confidence            87653        456788999999999888765  78999999999999999887   799999999999999999999


Q ss_pred             cCCCcEEEEecCCCceeeeeeccCCCCceEEe
Q 036585          237 SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKW  268 (304)
Q Consensus       237 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  268 (304)
                      +.|++|+|||+.+..+......+...+....+
T Consensus       383 s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~  414 (420)
T 4gga_A          383 AADETLRLWRCFELDPARRREREKASAAKSSL  414 (420)
T ss_dssp             ETTTEEEEECCSCSSCC---------------
T ss_pred             ecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence            99999999999887766665555544443333

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=5e-33  Score=229.58  Aligned_cols=211  Identities=16%  Similarity=0.227  Sum_probs=177.2

Q ss_pred             eeecccccceeEEEEccC-CCeEEEEecCCCCCceEEEEccC----------ceeeeecccccccEEEEEEcCCCC-EEE
Q 036585           51 KTINSKKYGVDLVCFTSH-PTTVIYSSKNGWDESLRLLSLHD----------NKYSRYFKGHHDRVVLLSLCSSKD-CFI  118 (304)
Q Consensus        51 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~  118 (304)
                      .....|.+.|.+++|+|+ +.++++++.   ||.|++|++.+          .+....+.+|...|.+++|+|++. +|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~---dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTP---SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECS---SSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECC---CCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence            445578899999999997 678888887   99999999987          567778889999999999999988 999


Q ss_pred             EcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec-CCcEEEEeeCCCeE
Q 036585          119 SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHI  197 (304)
Q Consensus       119 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  197 (304)
                      +++.||.|++||++.+.........                      ...+..|...|.+++|+| ++.+|++++.||.|
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~----------------------~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i  256 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDA----------------------KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL  256 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEEC----------------------SEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred             EEeCCCeEEEEeCCCCCCCCceecc----------------------ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence            9999999999999874332111000                      011235778999999999 67889999999999


Q ss_pred             EEEEcCCC---ceeEEEEeCCCCCCcceEEEEcCCCc-EEEEecCCCcEEEEecCC-CceeeeeeccCCCCceEEeCCCC
Q 036585          198 HVLDSFRG---TLLSTYNVKPVSRNSTLEASFSPEGM-FVISGSGDGSVHAWSVRS-GKEVASWMSFDTEPPVIKWAPGS  272 (304)
Q Consensus       198 ~~~d~~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~  272 (304)
                      ++||++++   +....+.   .|...+++++|+|++. ++++|+.||.|++||+++ .+++..+..|...|++++|+|++
T Consensus       257 ~i~d~~~~~~~~~~~~~~---~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~  333 (430)
T 2xyi_A          257 MIWDTRNNNTSKPSHTVD---AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN  333 (430)
T ss_dssp             EEEETTCSCSSSCSEEEE---CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSC
T ss_pred             EEEECCCCCCCcceeEee---cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCC
Confidence            99999987   4666666   6889999999999887 688999999999999998 56688888999999999999998


Q ss_pred             c-EEEEecCc--eEEeccCC
Q 036585          273 L-MFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       273 ~-~l~s~~~d--~~iw~~~~  289 (304)
                      + +|++++.|  ++||++..
T Consensus       334 ~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          334 ETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             TTEEEEEETTSCCEEEEGGG
T ss_pred             CCEEEEEeCCCcEEEEeCCC
Confidence            5 68888888  99999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.5e-34  Score=232.82  Aligned_cols=221  Identities=15%  Similarity=0.239  Sum_probs=191.0

Q ss_pred             CCCeEEEEecCCcceeeeecccccceeEEEEcc-CCCeEEEEecCCCCCceEEEEccCceeeeecc-------------c
Q 036585           35 DDESIRLYDVTAATCLKTINSKKYGVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK-------------G  100 (304)
Q Consensus        35 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~-------------~  100 (304)
                      .++.+++|+++.++....+.+|...|.+++|+| ++++|++++.   ||.|++||+.+++....+.             +
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGS---DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV   97 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEET---TSCEEEEECCCCSSSSCEEECEEEEECTTCTTC
T ss_pred             ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcC---CCeEEEEECCCCcccceEecccccccccccccc
Confidence            345688899988888889999999999999999 9999999998   9999999999876655443             5


Q ss_pred             ccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585          101 HHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV  179 (304)
Q Consensus       101 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  179 (304)
                      |...|.+++|+| ++.+|++++.||.|++||+++++....+.                              +...+.++
T Consensus        98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------------~~~~~~~~  147 (408)
T 4a11_B           98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN------------------------------FEETVYSH  147 (408)
T ss_dssp             CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE------------------------------CSSCEEEE
T ss_pred             CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc------------------------------CCCceeee
Confidence            899999999999 77899999999999999999887766554                              33567888


Q ss_pred             EEecC---CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc-EEEEecCCCcEEEEecCCCc-eee
Q 036585          180 KFSND---GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGSGDGSVHAWSVRSGK-EVA  254 (304)
Q Consensus       180 ~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~v~d~~~~~-~~~  254 (304)
                      .++|.   +.++++++.+|.|++||+++++....+.   .|...|.+++|+|+++ +|++++.||.|++||+++++ .+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~  224 (408)
T 4a11_B          148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ---GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLI  224 (408)
T ss_dssp             EECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC---CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSE
T ss_pred             EeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec---CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccc
Confidence            88884   4599999999999999999998888877   6889999999999998 58899999999999998765 233


Q ss_pred             ee---------------eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          255 SW---------------MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       255 ~~---------------~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      .+               ..|...|.+++|+|++++|++++.|  +++|++...+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          225 TLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             ECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             cccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence            33               5788999999999999999999988  9999987644

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-33  Score=230.18  Aligned_cols=221  Identities=11%  Similarity=0.149  Sum_probs=178.2

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeeccccc-----ceeEEEEccCCCeEEEEecCCCCCceEEEEccC
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKY-----GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   91 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~   91 (304)
                      ....+.|+|+|++||+++.||.|++||.++  ++..+. |..     .+.+++|||+|++|++++.   ||+|++||+.+
T Consensus        87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~---DGtVkIWd~~~  160 (588)
T 2j04_A           87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE---DGELQFFSIRK  160 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET---TSEEEEEECCC
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC---CCEEEEEECCC
Confidence            345689999999999999999999999654  666677 665     4999999999999999999   99999999998


Q ss_pred             cee-------eeec----ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec---eEEEeccceeEecCCCeEE
Q 036585           92 NKY-------SRYF----KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG---LLRVQGRPAAAYDDQGLVF  157 (304)
Q Consensus        92 ~~~-------~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~  157 (304)
                      ++.       +..+    .+|...|.+++|+|++  +++++.|+.|++||+..+....   .+.                
T Consensus       161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~----------------  222 (588)
T 2j04_A          161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ----------------  222 (588)
T ss_dssp             CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE----------------
T ss_pred             CccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec----------------
Confidence            752       4555    6788899999999999  8888899999999998776321   121                


Q ss_pred             EecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEE--cCCCcEEEE
Q 036585          158 GYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF--SPEGMFVIS  235 (304)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~  235 (304)
                                  .+|...|.+++|+  |+.+++++ +++|++||+.+++......   +|...+..++|  +|++..|++
T Consensus       223 ------------~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~---gh~~~V~~va~~~s~d~~~La~  284 (588)
T 2j04_A          223 ------------NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT---GSLENFHIIPLNHEKESTILLM  284 (588)
T ss_dssp             ------------CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC---SCCSCCCEEEETTCSSCEEEEE
T ss_pred             ------------ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc---CCCceEEEEEeeeCCCCCEEEE
Confidence                        1466789999999  68888887 6999999998877644333   58899999999  999999999


Q ss_pred             ecCCCcEEEEecCC------C-----------------ceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585          236 GSGDGSVHAWSVRS------G-----------------KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       236 ~~~dg~i~v~d~~~------~-----------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      +++||. ++|....      +                 +.+..+.+ ...|++++|+|||+.+|+++.=
T Consensus       285 a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~i  351 (588)
T 2j04_A          285 SNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVYDM  351 (588)
T ss_dssp             CSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEEE
T ss_pred             EcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEEec
Confidence            999999 9998642      1                 11122222 3458899999999999988753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-33  Score=226.92  Aligned_cols=224  Identities=10%  Similarity=0.071  Sum_probs=172.3

Q ss_pred             EEEeeCCCeEEEEecC---------Ccceeeeec-ccccceeEEEEcc--CCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           30 LVTASDDESIRLYDVT---------AATCLKTIN-SKKYGVDLVCFTS--HPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        30 l~~~~~d~~i~vw~~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      +++++.|++|++|+..         +++.+..+. .|..+|.+++|+|  +++++++++.   |+.|++||+++++....
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~~~~~  164 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADN---RGTIGFQSYEDDSQYIV  164 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEET---TCCEEEEESSSSCEEEE
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeC---CCcEEEEECCCCcEEEE
Confidence            8999999999999765         444444443 5668899999999  9999999998   99999999999988766


Q ss_pred             cc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee-ceEEEeccceeEecCCCeEEEecCCCeEEEEecC-CCC
Q 036585           98 FK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ-GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG-DIS  174 (304)
Q Consensus        98 ~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  174 (304)
                      .. .|...+.+++|+|++.+|++|+.||.|++||+++++.. ..+.                             . |..
T Consensus       165 ~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-----------------------------~~h~~  215 (343)
T 3lrv_A          165 HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP-----------------------------VDEEA  215 (343)
T ss_dssp             ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC-----------------------------CCTTS
T ss_pred             EecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe-----------------------------ccCCC
Confidence            54 35558999999999999999999999999999988754 3332                             3 778


Q ss_pred             CceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcc--eEEEEcCCCcEEEEecC-CCcEEEEecCCCc
Q 036585          175 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNST--LEASFSPEGMFVISGSG-DGSVHAWSVRSGK  251 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~  251 (304)
                      .|++++|+|++.+|++++ ++.|++||+++++....+.....+...+  .+++|+|++++|++++. |+.|++|++....
T Consensus       216 ~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          216 KIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             CEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             CEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence            999999999999999999 5599999999987665544211222333  46999999999999888 9999999997655


Q ss_pred             eeeeeeccCCCCceEEeCC---CCcEEEEecCc--eEEeccCCc
Q 036585          252 EVASWMSFDTEPPVIKWAP---GSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       252 ~~~~~~~~~~~i~~~~~~~---~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      .....    .++..++|+|   +...+++++.|  +.++.....
T Consensus       295 ~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  334 (343)
T 3lrv_A          295 KNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND  334 (343)
T ss_dssp             CSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred             cceEe----cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence            43222    4566777887   77777777777  666554443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.3e-33  Score=223.20  Aligned_cols=241  Identities=11%  Similarity=0.065  Sum_probs=195.8

Q ss_pred             eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce---eeeecccccccEEEEEEcCCCC-EEEEcccCCeE
Q 036585           51 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---YSRYFKGHHDRVVLLSLCSSKD-CFISGSLDRTV  126 (304)
Q Consensus        51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i  126 (304)
                      ....+|...|.+++|+|++++|++++.   |+.|++|++.+++   ....+..|...|.+++|+|+++ +|++++.||.|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   81 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSW---DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEET---TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcC---CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence            345579999999999999999999998   9999999998876   3455567999999999999999 99999999999


Q ss_pred             EEEeC-CcceeeceEEE--ec--cceeEecC-CCeEEEecCCCeEEEEecC-----------------CCCCceEEEEec
Q 036585          127 LLWDQ-RAEKCQGLLRV--QG--RPAAAYDD-QGLVFGYEKGPLDIFSVGG-----------------DISDANVVKFSN  183 (304)
Q Consensus       127 ~iwd~-~~~~~~~~~~~--~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~  183 (304)
                      ++||+ ++++.. .+..  +.  ...+.+.+ +..+.+..++.+.+|++..                 +...+.+++|+|
T Consensus        82 ~~wd~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (342)
T 1yfq_A           82 LKVDLIGSPSFQ-ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEECSSSSSSEE-ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             EEEEeccCCceE-eccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC
Confidence            99999 776552 2222  22  22456665 3345577788899998654                 557899999998


Q ss_pred             CCcEEEEeeCCCeEEEEEcCC-CceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEecCCC------ceeee
Q 036585          184 DGRLMLLTTMEGHIHVLDSFR-GTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWSVRSG------KEVAS  255 (304)
Q Consensus       184 ~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~------~~~~~  255 (304)
                      ++  +++++.++.|++||+++ +......... .+...+.+++|+| +++++++++.||.|++|+++..      +....
T Consensus       161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             SE--EEEEESTTEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             Cc--EEEEeCCCeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence            87  99999999999999988 5543222211 4778999999999 9999999999999999999876      77778


Q ss_pred             eeccCC---------CCceEEeCCCCcEEEEecCc--eEEeccCCc-cccccccC
Q 036585          256 WMSFDT---------EPPVIKWAPGSLMFVTGSSE--LSFWIPDLS-KLGAYVGR  298 (304)
Q Consensus       256 ~~~~~~---------~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~-~~~~~~~~  298 (304)
                      +..|..         +|.+++|+|++++|++++.|  +++|++... .+..+.+|
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence            877765         99999999999999999988  999999754 45666666

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.2e-33  Score=224.67  Aligned_cols=228  Identities=13%  Similarity=0.164  Sum_probs=172.8

Q ss_pred             EEecCCcceeeeecccccceeEEEEccC---CCeEEEEecCCCCCceEEEEccC-ceee-eecccccccEEEEEEcCCCC
Q 036585           41 LYDVTAATCLKTINSKKYGVDLVCFTSH---PTTVIYSSKNGWDESLRLLSLHD-NKYS-RYFKGHHDRVVLLSLCSSKD  115 (304)
Q Consensus        41 vw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~d~~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~  115 (304)
                      .|+....+.+..+.+|...|.+++|+|+   +++|++++.   |+.|++||+.+ ++.+ ..+.+|...|.+++|+|+++
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   99 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSW---ANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS   99 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEET---TSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECC---CCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC
Confidence            3455667778889999999999999999   599999998   99999999997 5444 77888999999999999999


Q ss_pred             EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEE--ecCCcEEEEeeC
Q 036585          116 CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF--SNDGRLMLLTTM  193 (304)
Q Consensus       116 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~  193 (304)
                      +|++++.||.|++||+++++......                              |...|.+++|  +|++++|++++.
T Consensus       100 ~l~s~~~dg~v~iwd~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~~~l~~~~~  149 (368)
T 3mmy_A          100 KVFTASCDKTAKMWDLSSNQAIQIAQ------------------------------HDAPVKTIHWIKAPNYSCVMTGSW  149 (368)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEE------------------------------CSSCEEEEEEEECSSCEEEEEEET
T ss_pred             EEEEEcCCCcEEEEEcCCCCceeecc------------------------------ccCceEEEEEEeCCCCCEEEEccC
Confidence            99999999999999999887655332                              4455566666  556666666666


Q ss_pred             CCeEEEEEcCCCceeEEEEeC--------------------------------------CCCCCcceEEEEcCCCcE---
Q 036585          194 EGHIHVLDSFRGTLLSTYNVK--------------------------------------PVSRNSTLEASFSPEGMF---  232 (304)
Q Consensus       194 dg~i~~~d~~~~~~~~~~~~~--------------------------------------~~~~~~i~~~~~s~~~~~---  232 (304)
                      ||.|++||+++++.+..+...                                      ........++++.++...   
T Consensus       150 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (368)
T 3mmy_A          150 DKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT  229 (368)
T ss_dssp             TSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred             CCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC
Confidence            666666666555544443311                                      112334455555554433   


Q ss_pred             -EEEecCCCcEEEEecCCC---ceeeeeeccCC------------CCceEEeCCCCcEEEEecCc--eEEeccCCc-ccc
Q 036585          233 -VISGSGDGSVHAWSVRSG---KEVASWMSFDT------------EPPVIKWAPGSLMFVTGSSE--LSFWIPDLS-KLG  293 (304)
Q Consensus       233 -l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~------------~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~-~~~  293 (304)
                       +++++.||.|++||++..   +.+..+..|..            +|++++|+|++++|++++.|  +++|+++.. .+.
T Consensus       230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~  309 (368)
T 3mmy_A          230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK  309 (368)
T ss_dssp             EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             eEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE
Confidence             999999999999999887   45666777765            79999999999999999999  999999754 455


Q ss_pred             ccccCCCC
Q 036585          294 AYVGRNRG  301 (304)
Q Consensus       294 ~~~~~~~g  301 (304)
                      .+.+|...
T Consensus       310 ~~~~~~~~  317 (368)
T 3mmy_A          310 TSEQLDQP  317 (368)
T ss_dssp             ECCCCSSC
T ss_pred             EecCCCCC
Confidence            66665543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.2e-33  Score=222.89  Aligned_cols=216  Identities=17%  Similarity=0.229  Sum_probs=180.3

Q ss_pred             eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc----eeeeecccccccEEEEEEcC--CCCEEEEcccCC
Q 036585           51 KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN----KYSRYFKGHHDRVVLLSLCS--SKDCFISGSLDR  124 (304)
Q Consensus        51 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg  124 (304)
                      ..+.+|...|.+++|+|++++|++++.   |+.|++||+.++    +....+.+|...|.+++|+|  ++++|++++.||
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg   81 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSS---DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK   81 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEET---TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeC---CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence            456789999999999999999999998   999999999876    46677788999999999999  689999999999


Q ss_pred             eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC--CcEEEEeeCCCeEEEEEc
Q 036585          125 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDS  202 (304)
Q Consensus       125 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~  202 (304)
                      .|++||++++.......                    ....+..+..|...|.+++|+|+  +++|++++.||.|++||+
T Consensus        82 ~v~vwd~~~~~~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~  141 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGR--------------------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA  141 (351)
T ss_dssp             CEEEEEECTTSCTTSSC--------------------SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred             eEEEEecCCCccccccc--------------------CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence            99999998764321100                    00112334468889999999999  999999999999999999


Q ss_pred             CCCceeEEEEe----------CCCCCCcceEEEEcCC---CcEEEEecCCCcEEEEecCCCce--eeeeeccCCCCceEE
Q 036585          203 FRGTLLSTYNV----------KPVSRNSTLEASFSPE---GMFVISGSGDGSVHAWSVRSGKE--VASWMSFDTEPPVIK  267 (304)
Q Consensus       203 ~~~~~~~~~~~----------~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~  267 (304)
                      ++++....+..          ...+...+.+++|+|+   +.++++++.++.+.+|+...++.  +..+.+|...|++++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  221 (351)
T 3f3f_A          142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSIS  221 (351)
T ss_dssp             SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEE
T ss_pred             CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEE
Confidence            88775544331          1246778999999997   89999999999998888877765  677788999999999


Q ss_pred             eCCCC----cEEEEecCc--eEEeccCC
Q 036585          268 WAPGS----LMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       268 ~~~~~----~~l~s~~~d--~~iw~~~~  289 (304)
                      |+|++    ++|++++.|  +++|++..
T Consensus       222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          222 WAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             ECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             ECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            99998    899999998  99999865

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-33  Score=243.39  Aligned_cols=210  Identities=17%  Similarity=0.276  Sum_probs=177.5

Q ss_pred             eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc--CceeeeecccccccEEEEEEcCC--CCEEEEcccCCe
Q 036585           50 LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH--DNKYSRYFKGHHDRVVLLSLCSS--KDCFISGSLDRT  125 (304)
Q Consensus        50 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~  125 (304)
                      +..+.+|.+.|.+++|+|+++++++++.   ||.|++||+.  +++.+..+.+|.++|.+++|+|+  +++|++++.||.
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~---dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~   78 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSS---DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEET---TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEEC---CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence            3567899999999999999999999998   9999999998  55778888999999999999987  899999999999


Q ss_pred             EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC--CcEEEEeeCCCeEEEEEcC
Q 036585          126 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND--GRLMLLTTMEGHIHVLDSF  203 (304)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~  203 (304)
                      |++||+++++.....                           .+..|...|.+++|+|+  ++.+++++.||.|++||++
T Consensus        79 I~vwd~~~~~~~~~~---------------------------~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~  131 (753)
T 3jro_A           79 VLIWKEENGRWSQIA---------------------------VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  131 (753)
T ss_dssp             EEEEEEETTEEEEEE---------------------------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             EEEEECCCCcccccc---------------------------cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence            999999887532222                           22357789999999999  9999999999999999998


Q ss_pred             CCceeEEEEeCCCCCCcceEEEEcC-------------CCcEEEEecCCCcEEEEecCCC----ceeeeeeccCCCCceE
Q 036585          204 RGTLLSTYNVKPVSRNSTLEASFSP-------------EGMFVISGSGDGSVHAWSVRSG----KEVASWMSFDTEPPVI  266 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~i~~~~~s~-------------~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~i~~~  266 (304)
                      ++......... .|...+.+++|+|             +++++++|+.||.|++||++++    .....+.+|..+|+++
T Consensus       132 ~~~~~~~~~~~-~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l  210 (753)
T 3jro_A          132 ENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV  210 (753)
T ss_dssp             SSSCCCCEEEE-CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred             cCCCcceeEee-cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEE
Confidence            87433322221 5888999999999             5899999999999999999877    4456778899999999


Q ss_pred             EeCCC---CcEEEEecCc--eEEeccCCc
Q 036585          267 KWAPG---SLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       267 ~~~~~---~~~l~s~~~d--~~iw~~~~~  290 (304)
                      +|+|+   +.+|++++.|  +++|++...
T Consensus       211 ~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          211 AWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             EECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             EeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence            99999   9999999999  999998765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.9e-31  Score=211.49  Aligned_cols=225  Identities=15%  Similarity=0.203  Sum_probs=183.2

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc-eeeee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-KYSRY   97 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~-~~~~~   97 (304)
                      ..+.+++++++|++|+.||+|++||+++++.+..+.+|...+.++.  +++..+++++.   ++.+++|+.... ..+..
T Consensus        71 ~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~--~~~~~l~s~~~---~~~~~~~~~~~~~~~~~~  145 (318)
T 4ggc_A           71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS--WNSYILSSGSR---SGHIHHHDVRVAEHHVAT  145 (318)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EETTEEEEEET---TSEEEEEETTSSSCEEEE
T ss_pred             EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEee--cCCCEEEEEec---CCceEeeecCCCceeEEE
Confidence            3578899999999999999999999999999999999988776654  46789999998   999999998875 45667


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceE--EE--ec--cceeEecCCC--eE-E--EecCCCeEE
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL--RV--QG--RPAAAYDDQG--LV-F--GYEKGPLDI  166 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~--~~--~~~~~~~~~~--~~-~--~~~~~~~~~  166 (304)
                      +.+|...+..+.+.++++++++++.|+.|++||+++++.....  ..  ..  .....+.+..  .+ .  +..++.+++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l  225 (318)
T 4ggc_A          146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI  225 (318)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred             EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence            7889999999999999999999999999999999877643221  11  11  1123333332  11 1  234456777


Q ss_pred             EEecC--------CCCCceEEEEecCCcEEEEee--CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585          167 FSVGG--------DISDANVVKFSNDGRLMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       167 ~~~~~--------~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                      |+...        +...+..+.|+|+++.+++++  .|+.|++||+++++.+.++.   +|...|++++|+|++++|++|
T Consensus       226 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~---gH~~~V~~l~~spdg~~l~S~  302 (318)
T 4ggc_A          226 WNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK---GHTSRVLSLTMSPDGATVASA  302 (318)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSCEEEE
T ss_pred             EecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEE
Confidence            76543        557788999999999887754  79999999999999999887   799999999999999999999


Q ss_pred             cCCCcEEEEecCCCc
Q 036585          237 SGDGSVHAWSVRSGK  251 (304)
Q Consensus       237 ~~dg~i~v~d~~~~~  251 (304)
                      +.||+|+|||+.+..
T Consensus       303 s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          303 AADETLRLWRCFELD  317 (318)
T ss_dssp             ETTTEEEEECCSCCC
T ss_pred             ecCCeEEEEECCCCC
Confidence            999999999997654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.2e-31  Score=221.86  Aligned_cols=221  Identities=18%  Similarity=0.348  Sum_probs=192.7

Q ss_pred             cccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCc
Q 036585           54 NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA  133 (304)
Q Consensus        54 ~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  133 (304)
                      ..|...|.++.+  +++.+++++.   |+.|++||+.+++....+.+|...|.+++|  +++++++|+.||.|++||+++
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLR---DNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEES---SSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeC---CCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence            345567888777  8999999998   999999999999999999999999999999  788999999999999999999


Q ss_pred             ceeeceEEEeccc--eeEecCCCeEEEecCCCeEEEEec------------CCCCCceEEEEecCCcEEEEeeCCCeEEE
Q 036585          134 EKCQGLLRVQGRP--AAAYDDQGLVFGYEKGPLDIFSVG------------GDISDANVVKFSNDGRLMLLTTMEGHIHV  199 (304)
Q Consensus       134 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  199 (304)
                      ++....+..+...  .+.++++..+.+..++.+.+|++.            +|...|.+++|  +++++++++.||.|++
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v  280 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV  280 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred             CcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence            9887776544433  455666667778888999998764            35677888888  7889999999999999


Q ss_pred             EEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEec
Q 036585          200 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGS  279 (304)
Q Consensus       200 ~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  279 (304)
                      ||+++++.+..+.   .|...+.+++|  +++++++|+.||.|++||+++++++..+.+|...|.+++|  ++.+|++|+
T Consensus       281 wd~~~~~~~~~~~---~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~  353 (435)
T 1p22_A          281 WNTSTCEFVRTLN---GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA  353 (435)
T ss_dssp             EETTTCCEEEEEE---CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred             EECCcCcEEEEEc---CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe
Confidence            9999999999988   68889999998  4679999999999999999999999999999999999999  788999999


Q ss_pred             Cc--eEEeccCCc
Q 036585          280 SE--LSFWIPDLS  290 (304)
Q Consensus       280 ~d--~~iw~~~~~  290 (304)
                      .|  +++|++...
T Consensus       354 ~dg~i~vwd~~~~  366 (435)
T 1p22_A          354 YDGKIKVWDLVAA  366 (435)
T ss_dssp             TTSCEEEEEHHHH
T ss_pred             CCCcEEEEECCCC
Confidence            98  999998543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=9.6e-32  Score=208.18  Aligned_cols=196  Identities=8%  Similarity=0.072  Sum_probs=152.5

Q ss_pred             eEeecccCcEEEEee--CCCeEEEEec-CCcceeeeecccccceeEEEEcc---CCCeEEEEecCCCCCceEEEEccCce
Q 036585           20 ILQSMEVGIYLVTAS--DDESIRLYDV-TAATCLKTINSKKYGVDLVCFTS---HPTTVIYSSKNGWDESLRLLSLHDNK   93 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~--~d~~i~vw~~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~~~d~~i~vwd~~~~~   93 (304)
                      .+...+.|+++.+++  .|+.|++|++ .+++.+..+.+|...+..++|+|   ++..|++++.   |++|+|||+.+++
T Consensus       138 ~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~---D~TIkIWDl~TGk  214 (356)
T 2w18_A          138 AVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTI---MNNIVIWNLKTGQ  214 (356)
T ss_dssp             EEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEET---TSEEEEEETTTCC
T ss_pred             EEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecC---CCcEEEEECCCCc
Confidence            333445566666543  5999999999 55888888899999999999999   7799999998   9999999999999


Q ss_pred             eeeeccccc---ccEEEEEEcCCCCEE------------EEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585           94 YSRYFKGHH---DRVVLLSLCSSKDCF------------ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG  158 (304)
Q Consensus        94 ~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (304)
                      .++++.+|.   ..+.+++|+|++.++            ++|+.|++|++||..+++....+....       +      
T Consensus       215 ~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~-------p------  281 (356)
T 2w18_A          215 LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL-------P------  281 (356)
T ss_dssp             EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC-------C------
T ss_pred             EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec-------c------
Confidence            999998654   367788999999876            567889999999999888765442110       0      


Q ss_pred             ecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcce-EEEEcCCCcEEEEec
Q 036585          159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTL-EASFSPEGMFVISGS  237 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~  237 (304)
                                 .+|...+.  ..+.++.++++++.|++|++||+.+++.+.++.   +|...+. .++|+|||++|++|+
T Consensus       282 -----------~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~---gH~~~vvs~vafSPDG~~LaSGS  345 (356)
T 2w18_A          282 -----------PGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLP---PVSDQHWSFVKWSGTDSHLLAGQ  345 (356)
T ss_dssp             -----------TTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEEC---CC--CCCCEEEECSSSSEEEEEC
T ss_pred             -----------CCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEec---CCCCCeEEEEEECCCCCEEEEEE
Confidence                       13333333  334448889999999999999999999999987   5665544 689999999999999


Q ss_pred             CCCcEEEEec
Q 036585          238 GDGSVHAWSV  247 (304)
Q Consensus       238 ~dg~i~v~d~  247 (304)
                      .|++|+|||+
T Consensus       346 ~D~TIklWd~  355 (356)
T 2w18_A          346 KDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCcEEEecC
Confidence            9999999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=8.4e-30  Score=207.84  Aligned_cols=236  Identities=11%  Similarity=0.125  Sum_probs=192.8

Q ss_pred             eeeEeecccCcEE-EEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           18 EEILQSMEVGIYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        18 ~~~i~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ...+.++++|+++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++++++++..  ++.|++||+.+++.+.
T Consensus        34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~--~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMA--SSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEE
T ss_pred             cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECC--CCEEEEEECCCCeEEE
Confidence            3457889999876 677789999999999999988888766 89999999999988766642  7999999999999888


Q ss_pred             ecccccccEEEEEEcCCCCEE-EEcccCCeEEEEeCCcceeeceEEEec-cceeEecCCCeEE---EecCCCeEEEEecC
Q 036585           97 YFKGHHDRVVLLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVF---GYEKGPLDIFSVGG  171 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~  171 (304)
                      .+.. ...+.+++|+|+++.+ ++++.++.|++||+++++....+.... ...+.+++++..+   ...++.+.+|++..
T Consensus       111 ~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~  189 (391)
T 1l0q_A          111 TVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT  189 (391)
T ss_dssp             EEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            7774 4568999999999977 688889999999999988877766433 3356788887432   34566788887653


Q ss_pred             --------CCCCceEEEEecCCcEEEEee---CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEE-EEecCC
Q 036585          172 --------DISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV-ISGSGD  239 (304)
Q Consensus       172 --------~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~d  239 (304)
                              +...+.+++|+|+++++++++   .++.|++||+++++.+..+.   . ...+.+++|+|++++| ++++.|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~---~-~~~~~~~~~s~dg~~l~~s~~~d  265 (391)
T 1l0q_A          190 NSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP---V-GPDPAGIAVTPDGKKVYVALSFX  265 (391)
T ss_dssp             TEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE---C-CSSEEEEEECTTSSEEEEEETTT
T ss_pred             CeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe---c-CCCccEEEEccCCCEEEEEcCCC
Confidence                    345678999999999999888   68999999999999888877   2 3457889999999887 566889


Q ss_pred             CcEEEEecCCCceeeeeeccCC
Q 036585          240 GSVHAWSVRSGKEVASWMSFDT  261 (304)
Q Consensus       240 g~i~v~d~~~~~~~~~~~~~~~  261 (304)
                      +.|++||+.+++.+..+..|..
T Consensus       266 ~~v~v~d~~~~~~~~~~~~~~~  287 (391)
T 1l0q_A          266 NTVSVIDTATNTITATMAVGKN  287 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSSS
T ss_pred             CEEEEEECCCCcEEEEEECCcC
Confidence            9999999999988887765544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.98  E-value=3.3e-30  Score=211.39  Aligned_cols=236  Identities=11%  Similarity=0.077  Sum_probs=183.6

Q ss_pred             CcEEEEeeCC------CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc
Q 036585           27 GIYLVTASDD------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG  100 (304)
Q Consensus        27 ~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~  100 (304)
                      +..++.++.+      +.|++||+. +.....+..|...+.+++|+|+++.|++++..+.+..|++||+.+++.. .+..
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~  220 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS  220 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred             CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence            6667766654      799999997 4556778889999999999999999999987211249999999998765 4566


Q ss_pred             ccccEEEEEEcCCCCEEE-EcccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585          101 HHDRVVLLSLCSSKDCFI-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus       101 ~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      |...+.+++|+|+++.|+ +++.++  .|++||+++++....                              ..+...+.
T Consensus       221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l------------------------------~~~~~~~~  270 (415)
T 2hqs_A          221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV------------------------------TDGRSNNT  270 (415)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC------------------------------CCCSSCEE
T ss_pred             CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC------------------------------cCCCCccc
Confidence            888999999999999877 666555  499999987654221                              13556788


Q ss_pred             EEEEecCCcEEEEeeC-CC--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC---CcEEEEecCCCc
Q 036585          178 VVKFSNDGRLMLLTTM-EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD---GSVHAWSVRSGK  251 (304)
Q Consensus       178 ~~~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~  251 (304)
                      +++|+|+|++|++++. ++  .|++||+.+++.. .+.   .+...+..++|+|+|++|++++.+   ..|++||+.+++
T Consensus       271 ~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~---~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~  346 (415)
T 2hqs_A          271 EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RIT---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  346 (415)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECC---CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred             ceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEe---cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence            9999999999988876 44  7888898887643 222   356688899999999999988754   589999999887


Q ss_pred             eeeeeeccCCCCceEEeCCCCcEEEEecCc-----eEEeccCCccccccccCCC
Q 036585          252 EVASWMSFDTEPPVIKWAPGSLMFVTGSSE-----LSFWIPDLSKLGAYVGRNR  300 (304)
Q Consensus       252 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~iw~~~~~~~~~~~~~~~  300 (304)
                      .. .+..+. .+.+++|+|+|++|++++.+     +.+|+++.+....+.+++.
T Consensus       347 ~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~  398 (415)
T 2hqs_A          347 VQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG  398 (415)
T ss_dssp             EE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSS
T ss_pred             EE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCC
Confidence            63 455554 89999999999999888765     5666777777777766654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=4.3e-31  Score=215.40  Aligned_cols=205  Identities=12%  Similarity=0.072  Sum_probs=141.6

Q ss_pred             EEccCCCeEEEEecCCCCCceEEEEccCcee-----eeecccccccEEEEEEcC--------CCCEEEEcccCCeEEEEe
Q 036585           64 CFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-----SRYFKGHHDRVVLLSLCS--------SKDCFISGSLDRTVLLWD  130 (304)
Q Consensus        64 ~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~iwd  130 (304)
                      .+++++..+++++.   |++|++||..+++.     +..+.+|.+.|.+++|+|        ++++|++++.|++|++||
T Consensus        96 ~~~~~~~~las~~~---d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A           96 SSPVYSLFLACVCQ---DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR  172 (393)
T ss_dssp             -CCEEEEEEEEEET---TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred             ecCCCCCEEEEEeC---CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence            33445667889988   99999999988754     345789999999999997        788999999999999999


Q ss_pred             CCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCc-EEEEeeCCCeEEEEEcCCCceeE
Q 036585          131 QRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGTLLS  209 (304)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~  209 (304)
                      ++++.....+.                             .|...+.+++|+|++. +|++++.||+|++||+++++...
T Consensus       173 ~~~~~~~~~~~-----------------------------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~  223 (393)
T 4gq1_A          173 LTDEGPILAGY-----------------------------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAE  223 (393)
T ss_dssp             EETTEEEEEEE-----------------------------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---
T ss_pred             CCCCceeeeec-----------------------------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccc
Confidence            98776544433                             4667899999999874 79999999999999998876544


Q ss_pred             EEEe----------------------CCCCCCcceEEEEc-CCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceE
Q 036585          210 TYNV----------------------KPVSRNSTLEASFS-PEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVI  266 (304)
Q Consensus       210 ~~~~----------------------~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~  266 (304)
                      ....                      ...+...+.++.|+ |+++.|++++.|+.+++||+..++....+..|...+..+
T Consensus       224 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~  303 (393)
T 4gq1_A          224 ENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPK  303 (393)
T ss_dssp             -------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------
T ss_pred             cccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccE
Confidence            3321                      12456778888887 799999999999999999998877665555554443333


Q ss_pred             ------------------EeCC--CCcEEEEecCc--eEEeccCCcc-ccccccCCC
Q 036585          267 ------------------KWAP--GSLMFVTGSSE--LSFWIPDLSK-LGAYVGRNR  300 (304)
Q Consensus       267 ------------------~~~~--~~~~l~s~~~d--~~iw~~~~~~-~~~~~~~~~  300 (304)
                                        .|+|  ++.++++|+.|  ++||+..... .....+|+.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~  360 (393)
T 4gq1_A          304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM  360 (393)
T ss_dssp             CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS
T ss_pred             EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC
Confidence                              3333  34567778877  9999986544 333444443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=1.7e-28  Score=207.18  Aligned_cols=264  Identities=15%  Similarity=0.138  Sum_probs=206.7

Q ss_pred             eecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc--cCceeeeecc
Q 036585           22 QSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL--HDNKYSRYFK   99 (304)
Q Consensus        22 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~--~~~~~~~~~~   99 (304)
                      .+++++.++++++.|++|.+||..+++++.++..+.. +..++|+|++++|++++.   |+.|++||+  .+++.+..+.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~---d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGR---DARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEET---TSEEEEEETTSSSCEEEEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECC---CCeEEEEECcCCCCcEEEEEe
Confidence            4677899999999999999999999999999884433 889999999999999998   999999999  8888888887


Q ss_pred             cccccEEEEEEcC----CCCEEEEccc-CCeEEEEeCCcceeeceEEEec-------------cceeEecCCCe-EE--E
Q 036585          100 GHHDRVVLLSLCS----SKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQG-------------RPAAAYDDQGL-VF--G  158 (304)
Q Consensus       100 ~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~-~~--~  158 (304)
                       +...+..++|+|    +++++++++. +++|.+||..+.+.+..+...+             ...+.+++++. ++  .
T Consensus       220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence             455679999999    9999998874 8999999999988887765421             12345565442 22  2


Q ss_pred             ecCCCeEEEEecC----------CCCCceEEEEecCCcEEEEee-CCCeEEEEEcCCCceeEEEEeCC-CCCCcceEEEE
Q 036585          159 YEKGPLDIFSVGG----------DISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASF  226 (304)
Q Consensus       159 ~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~-~~~~~i~~~~~  226 (304)
                      ..++.+.+++...          +...+..+.|+|+|+++++++ .+++|.+||+.++++...+.... .|.+....+ +
T Consensus       299 ~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~  377 (543)
T 1nir_A          299 KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-V  377 (543)
T ss_dssp             TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-E
T ss_pred             CCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-C
Confidence            3345566665432          234567799999999877655 58899999999999988887321 133333333 4


Q ss_pred             cCC-CcEEEEec-CCCcEEEEecCC-------CceeeeeeccCCCCceEEeCCCCcEEEEec--------Cc-eEEeccC
Q 036585          227 SPE-GMFVISGS-GDGSVHAWSVRS-------GKEVASWMSFDTEPPVIKWAPGSLMFVTGS--------SE-LSFWIPD  288 (304)
Q Consensus       227 s~~-~~~l~~~~-~dg~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--------~d-~~iw~~~  288 (304)
                      +|+ +..++++. .|++|.+||+.+       .+.++++..|...+..++|+|++++|++++        .+ |.+|+.+
T Consensus       378 ~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~  457 (543)
T 1nir_A          378 HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK  457 (543)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred             CCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECC
Confidence            777 66666665 689999999988       888999999998999999999999999987        33 9999987


Q ss_pred             Ccc
Q 036585          289 LSK  291 (304)
Q Consensus       289 ~~~  291 (304)
                      ..+
T Consensus       458 ~~~  460 (543)
T 1nir_A          458 NLD  460 (543)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.97  E-value=6.8e-28  Score=192.17  Aligned_cols=264  Identities=12%  Similarity=0.082  Sum_probs=199.5

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee-eeecccccccE
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-SRYFKGHHDRV  105 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v  105 (304)
                      +..+++.+.++.|++||..+++.+..+..+...+ .++|+|+++++++++..  ++.|.+||+.+++. ...+..+..+.
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~   86 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDF--CQTLVQIETQLEPPKVVAIQEGQSSM   86 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEEST--TCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCC--CCeEEEEECCCCceeEEecccCCCCc
Confidence            4557788889999999999999988887766667 99999999987777653  78999999999887 66676666666


Q ss_pred             EEEEEcCCCCEEEEcccCC---eEEEEeCCcceeeceEEEecc-ceeEecCCCe-EE-E-ecCCC-eEEEEecC------
Q 036585          106 VLLSLCSSKDCFISGSLDR---TVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGL-VF-G-YEKGP-LDIFSVGG------  171 (304)
Q Consensus       106 ~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~-~~~~~-~~~~~~~~------  171 (304)
                      .+++|+|++++++++..++   .|.+||+++++....+..... ..+.+++++. ++ . ...+. +.+|++..      
T Consensus        87 ~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~  166 (331)
T 3u4y_A           87 ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD  166 (331)
T ss_dssp             CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred             cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence            5599999999998666553   899999999888776655333 4578888874 33 3 33466 78777542      


Q ss_pred             -------CCCCceEEEEecCCcEEEEe-eCCCeEEEEEcCCCce---eEEEEeCCCCCCcceEEEEcCCCcEEEEec-CC
Q 036585          172 -------DISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTL---LSTYNVKPVSRNSTLEASFSPEGMFVISGS-GD  239 (304)
Q Consensus       172 -------~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d  239 (304)
                             .......++|+|+|++++++ ..++.|++||+.+++.   +..+.    ....+..++|+|||++|++++ .+
T Consensus       167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~  242 (331)
T 3u4y_A          167 TGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTIVVSRDGSTVYVLTEST  242 (331)
T ss_dssp             EEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCEEECTTSSEEEEECSSE
T ss_pred             cCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceEEECCCCCEEEEEEcCC
Confidence                   22456789999999966555 4689999999999888   66665    346677899999999776654 57


Q ss_pred             CcEEEEecCCCce--eeeeecc----CC---CCceEEeCCCCcEEEEecCc---eEEeccCCcccccccc
Q 036585          240 GSVHAWSVRSGKE--VASWMSF----DT---EPPVIKWAPGSLMFVTGSSE---LSFWIPDLSKLGAYVG  297 (304)
Q Consensus       240 g~i~v~d~~~~~~--~~~~~~~----~~---~i~~~~~~~~~~~l~s~~~d---~~iw~~~~~~~~~~~~  297 (304)
                      +.|.+||+.+++.  +..+..+    ..   ....++|+|++++|++++.+   +.+|+++...+....+
T Consensus       243 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~  312 (331)
T 3u4y_A          243 VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAG  312 (331)
T ss_dssp             EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTT
T ss_pred             CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceec
Confidence            7899999998876  3333222    22   23558999999988766654   8999998776654433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=2.2e-27  Score=196.11  Aligned_cols=223  Identities=11%  Similarity=0.146  Sum_probs=185.3

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      .+.+.++++++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++++..  |+.|++||+.+++.+..+.
T Consensus       174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~d~~~~~~~~~~~  251 (433)
T 3bws_A          174 TISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWI--SEDISVIDRKTKLEIRKTD  251 (433)
T ss_dssp             EEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETT--TTEEEEEETTTTEEEEECC
T ss_pred             EEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecC--CCcEEEEECCCCcEEEEec
Confidence            36778899999999999999999999999999998898999999999999988666532  8999999999998888877


Q ss_pred             cccccEEEEEEcCCCCEEEEcc--------cCCeEEEEeCCcceeeceEEEe-ccceeEecCCCe-E-E-EecCCCeEEE
Q 036585          100 GHHDRVVLLSLCSSKDCFISGS--------LDRTVLLWDQRAEKCQGLLRVQ-GRPAAAYDDQGL-V-F-GYEKGPLDIF  167 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~-~~~~~~~~~~  167 (304)
                      .+ ..+.+++|+|+++++++++        .|+.|++||+++++....+... ....+.+++++. + + ...++.+.+|
T Consensus       252 ~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~  330 (433)
T 3bws_A          252 KI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVY  330 (433)
T ss_dssp             CC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred             CC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            54 5689999999999999887        4889999999988877666433 333567888773 3 2 3566778888


Q ss_pred             EecC--------CCCCceEEEEecCCcEEEEeeC---------------CCeEEEEEcCCCceeEEEEeCCCCCCcceEE
Q 036585          168 SVGG--------DISDANVVKFSNDGRLMLLTTM---------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA  224 (304)
Q Consensus       168 ~~~~--------~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~  224 (304)
                      ++..        +...+.+++|+|+++++++++.               ||.|++||+.+++.+..+.    ....+.++
T Consensus       331 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~----~~~~~~~~  406 (433)
T 3bws_A          331 DLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE----AGNQPTGL  406 (433)
T ss_dssp             ETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE----CSSSEEEE
T ss_pred             ECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec----CCCCCceE
Confidence            7653        4467889999999998888876               5799999999999888887    35678999


Q ss_pred             EEcCCCcEEEEec-CCCcEEEEecCC
Q 036585          225 SFSPEGMFVISGS-GDGSVHAWSVRS  249 (304)
Q Consensus       225 ~~s~~~~~l~~~~-~dg~i~v~d~~~  249 (304)
                      +|+|++++|++++ .|+.|++|++..
T Consensus       407 ~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          407 DVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEcCCCCEEEEEECCCCeEEEEEecC
Confidence            9999999998876 499999999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=1.7e-28  Score=201.29  Aligned_cols=241  Identities=13%  Similarity=0.107  Sum_probs=183.4

Q ss_pred             EeecccC-cEEEEee----CCC----eEEEEec--CCccee--eeecccccceeEEEEcc--------------CCCeEE
Q 036585           21 LQSMEVG-IYLVTAS----DDE----SIRLYDV--TAATCL--KTINSKKYGVDLVCFTS--------------HPTTVI   73 (304)
Q Consensus        21 i~~~~~~-~~l~~~~----~d~----~i~vw~~--~~~~~~--~~~~~~~~~v~~~~~~~--------------~~~~l~   73 (304)
                      ..|.+.| +++++|+    .||    .+++||+  .+++.+  ..+.+|...+..+++++              .+..++
T Consensus        68 ~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~  147 (415)
T 2hqs_A           68 AAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIA  147 (415)
T ss_dssp             HHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEE
T ss_pred             HHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEE
Confidence            3445555 4666776    467    8999999  888877  55888888888877765              166777


Q ss_pred             EEecCCCC---CceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCC---eEEEEeCCcceeeceEEEeccce
Q 036585           74 YSSKNGWD---ESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDR---TVLLWDQRAEKCQGLLRVQGRPA  147 (304)
Q Consensus        74 ~~~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~  147 (304)
                      +++....+   +.|++||+.. .....+..|...+.+++|+|++++|++++.++   .|++||+++++.....       
T Consensus       148 ~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~-------  219 (415)
T 2hqs_A          148 YVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-------  219 (415)
T ss_dssp             EEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE-------
T ss_pred             EEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee-------
Confidence            76652112   7999999974 45677778999999999999999999998875   9999999987654221       


Q ss_pred             eEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEE-EeeCCC--eEEEEEcCCCceeEEEEeCCCCCCcceEE
Q 036585          148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLML-LTTMEG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEA  224 (304)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~  224 (304)
                                             .+...+.+++|+|||+.|+ +++.++  .|++||+.+++.. .+.   .+...+.++
T Consensus       220 -----------------------~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~---~~~~~~~~~  272 (415)
T 2hqs_A          220 -----------------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT---DGRSNNTEP  272 (415)
T ss_dssp             -----------------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC---CCSSCEEEE
T ss_pred             -----------------------cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc---CCCCcccce
Confidence                                   3445788999999999888 555555  4999999887753 333   467789999


Q ss_pred             EEcCCCcEEEEecC-CC--cEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-----eEEeccCCccccccc
Q 036585          225 SFSPEGMFVISGSG-DG--SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-----LSFWIPDLSKLGAYV  296 (304)
Q Consensus       225 ~~s~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----~~iw~~~~~~~~~~~  296 (304)
                      +|+|||++|++++. ++  .|++||+.+++. ..+..+...+.+++|+|+|++|++++.+     +.+|+.+..+...+.
T Consensus       273 ~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~  351 (415)
T 2hqs_A          273 TWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS  351 (415)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC
T ss_pred             EECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEec
Confidence            99999999888775 44  678889887764 4455577788899999999999888753     788888776665544


Q ss_pred             c
Q 036585          297 G  297 (304)
Q Consensus       297 ~  297 (304)
                      .
T Consensus       352 ~  352 (415)
T 2hqs_A          352 S  352 (415)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=5.7e-28  Score=212.55  Aligned_cols=265  Identities=11%  Similarity=0.039  Sum_probs=199.5

Q ss_pred             eeeEeecccCcEEEEeeC-CC-----eEEEEecCCcceeeeeccccc------------------------ceeEEEEcc
Q 036585           18 EEILQSMEVGIYLVTASD-DE-----SIRLYDVTAATCLKTINSKKY------------------------GVDLVCFTS   67 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~-d~-----~i~vw~~~~~~~~~~~~~~~~------------------------~v~~~~~~~   67 (304)
                      ...+.++|||++|++++. |+     .|++||+.+++....+..+..                        .+.+++|+|
T Consensus        39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp  118 (741)
T 2ecf_A           39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP  118 (741)
T ss_dssp             CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred             CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence            456899999999999998 88     899999999887776665432                        388999999


Q ss_pred             CCCeEEEEecCCCCCceEEEEccCce--eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec-
Q 036585           68 HPTTVIYSSKNGWDESLRLLSLHDNK--YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-  144 (304)
Q Consensus        68 ~~~~l~~~~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-  144 (304)
                      |+++|++++    ++.|++||+.+++  ....+..|...+..++|+|||++|++++ ++.|++||+.+++......... 
T Consensus       119 Dg~~l~~~~----~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          119 DAQRLLFPL----GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             TSSEEEEEE----TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred             CCCEEEEEe----CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence            999999998    6899999999883  4455667888899999999999999887 4699999998876654433222 


Q ss_pred             -----------------cceeEecCCCeEE--EecCC---------------------------------CeEEEEecC-
Q 036585          145 -----------------RPAAAYDDQGLVF--GYEKG---------------------------------PLDIFSVGG-  171 (304)
Q Consensus       145 -----------------~~~~~~~~~~~~~--~~~~~---------------------------------~~~~~~~~~-  171 (304)
                                       ...+.++|++..+  ...++                                 .+.++++.. 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence                             2457888888533  22221                                 344455433 


Q ss_pred             -----------CCCCceEEEEecCCcEEEEeeC-----CCeEEEEEcCCCceeEEEEeCCC-CCCcceEEEEcCCCcEEE
Q 036585          172 -----------DISDANVVKFSNDGRLMLLTTM-----EGHIHVLDSFRGTLLSTYNVKPV-SRNSTLEASFSPEGMFVI  234 (304)
Q Consensus       172 -----------~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~  234 (304)
                                 +...+..++| |||++|++++.     +..|++||+.+++....+..... ....+..++|+|||++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~  352 (741)
T 2ecf_A          274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW  352 (741)
T ss_dssp             CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred             CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence                       3345678999 99999987654     56899999999987776653211 001456789999999999


Q ss_pred             EecCCCcEEEEecC-CCceeeeeeccCCCCceE-EeCCCCcEEEE-ecCc----eEEeccCC
Q 036585          235 SGSGDGSVHAWSVR-SGKEVASWMSFDTEPPVI-KWAPGSLMFVT-GSSE----LSFWIPDL  289 (304)
Q Consensus       235 ~~~~dg~i~v~d~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~l~s-~~~d----~~iw~~~~  289 (304)
                      +++.||.++||.+. +++ ...+..|...+..+ .|+|+++.|+. ++.+    ++||.++.
T Consensus       353 ~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          353 SSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             EECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             EecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            99999988888765 445 67777788888887 59999987754 4433    78998754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=6.9e-28  Score=188.75  Aligned_cols=242  Identities=14%  Similarity=0.118  Sum_probs=181.6

Q ss_pred             EeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC-ceeeeecccc-cccEEEEE
Q 036585           32 TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYSRYFKGH-HDRVVLLS  109 (304)
Q Consensus        32 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~-~~~~~~~~~~-~~~v~~~~  109 (304)
                      .++.|+.|++||+.+++.. .+..|...+.+++|+|++++|++++    ++.|++||+.+ ++.......+ ...+.+++
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS----EGLLYRLSLAGDPSPEKVDTGFATICNNDHG   91 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE----TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc----CCeEEEEeCCCCCCceEeccccccccccceE
Confidence            4467899999999988765 4556888999999999999999986    88999999999 8777666655 36789999


Q ss_pred             EcCCCCEEEEcc--cCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEE---EecCCCeEEEEec----------CC
Q 036585          110 LCSSKDCFISGS--LDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF---GYEKGPLDIFSVG----------GD  172 (304)
Q Consensus       110 ~~~~~~~l~~~~--~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------~~  172 (304)
                      |+|++++|++++  .++  .|..|++.++.............+.+++++..+   ...++.+.+|.+.          .+
T Consensus        92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~  171 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG  171 (297)
T ss_dssp             ECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred             ECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence            999999999988  334  444455554443222112223345788887433   3445667777653          24


Q ss_pred             CCCceEEEEecCCcEEEEee-CCCeEEEEEcC-CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-----------
Q 036585          173 ISDANVVKFSNDGRLMLLTT-MEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----------  239 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------  239 (304)
                      ...+.+++|+|+++++++++ .++.+++|++. .+.....+.   .+...+..++|+|++++|++++.+           
T Consensus       172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  248 (297)
T 2ojh_A          172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT---DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD  248 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC---CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred             CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe---cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence            46788999999999888766 58899999886 444444444   466788899999999999888765           


Q ss_pred             CcEEEEecCCCce--eeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585          240 GSVHAWSVRSGKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       240 g~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      +.|++||+.+++.  +..+.+|...+.+++|+|++++|++++.+
T Consensus       249 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          249 VRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             EEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             eEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            5699999988765  34445788899999999999999888765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=2.9e-26  Score=193.57  Aligned_cols=269  Identities=11%  Similarity=0.050  Sum_probs=205.1

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEec--CCcceeeeecccccceeEEEEcc----CCCeEEEEecCCCCCceEEEEccC
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDV--TAATCLKTINSKKYGVDLVCFTS----HPTTVIYSSKNGWDESLRLLSLHD   91 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~~~~d~~i~vwd~~~   91 (304)
                      ...+.++|+|++|++++.|+.|++||+  .+++.+.++..+ ..+..++|+|    +++++++++..  +++|.+||..+
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-~~p~~va~sp~~~~dg~~l~v~~~~--~~~v~v~D~~t  257 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-IEARSVESSKFKGYEDRYTIAGAYW--PPQFAIMDGET  257 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEE--SSEEEEEETTT
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-CCcceEEeCCCcCCCCCEEEEEEcc--CCeEEEEeccc
Confidence            356889999999999999999999999  888888888754 4679999999    99999999853  89999999999


Q ss_pred             ceeeeeccc----------ccc-cEEEEEEcCCCC-EEEEcccCCeEEEEeCCcceeec--eEEE-eccceeEecCCCeE
Q 036585           92 NKYSRYFKG----------HHD-RVVLLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQG--LLRV-QGRPAAAYDDQGLV  156 (304)
Q Consensus        92 ~~~~~~~~~----------~~~-~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~-~~~~~~~~~~~~~~  156 (304)
                      ++++..+..          |.. .+.++.++|++. ++++...++.|.+||+.+.+...  .+.. .....+.+++++.+
T Consensus       258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~  337 (543)
T 1nir_A          258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY  337 (543)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE
T ss_pred             cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE
Confidence            988877754          223 789999999766 55667788999999998765544  2221 12234678888863


Q ss_pred             E--E-ecCCCeEEEEecC-------------CCCCceEEEEecC-CcEEEEee-CCCeEEEEEcCC-------CceeEEE
Q 036585          157 F--G-YEKGPLDIFSVGG-------------DISDANVVKFSND-GRLMLLTT-MEGHIHVLDSFR-------GTLLSTY  211 (304)
Q Consensus       157 ~--~-~~~~~~~~~~~~~-------------~~~~v~~~~~~~~-~~~l~~~~-~dg~i~~~d~~~-------~~~~~~~  211 (304)
                      +  . ..++.+.+|+...             |......+ ++|+ +..++++. .+++|.+||+.+       ++.+.++
T Consensus       338 l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l  416 (543)
T 1nir_A          338 FMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL  416 (543)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred             EEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE
Confidence            3  2 2356777776542             22222222 4677 55566654 579999999988       8888888


Q ss_pred             EeCCCCCCcceEEEEcCCCcEEEEec-------CCCcEEEEecCCCcee-eee--------eccCCCCceEEeCCCCcEE
Q 036585          212 NVKPVSRNSTLEASFSPEGMFVISGS-------GDGSVHAWSVRSGKEV-ASW--------MSFDTEPPVIKWAPGSLMF  275 (304)
Q Consensus       212 ~~~~~~~~~i~~~~~s~~~~~l~~~~-------~dg~i~v~d~~~~~~~-~~~--------~~~~~~i~~~~~~~~~~~l  275 (304)
                      .   .+...+..++|+|++++|++++       .+++|.+||+.+++.. ..+        ..+...+..++|+|+|+.+
T Consensus       417 ~---~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~  493 (543)
T 1nir_A          417 Q---GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV  493 (543)
T ss_dssp             E---CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEE
T ss_pred             E---cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEE
Confidence            8   5667778899999999999987       2679999999998876 433        3456789999999999988


Q ss_pred             EEec-----Cc--eEEeccCCcccc
Q 036585          276 VTGS-----SE--LSFWIPDLSKLG  293 (304)
Q Consensus       276 ~s~~-----~d--~~iw~~~~~~~~  293 (304)
                      +++.     .+  |.|||....++.
T Consensus       494 ~~s~~~~~~~~~~i~v~D~~t~~~~  518 (543)
T 1nir_A          494 WFSVWNGKNDSSALVVVDDKTLKLK  518 (543)
T ss_dssp             EEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             EEEeecCCCCCCeEEEEECCCceEE
Confidence            8662     23  999998776553

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=6.6e-26  Score=182.20  Aligned_cols=245  Identities=9%  Similarity=0.054  Sum_probs=191.8

Q ss_pred             eecceeeEeecccCcEEEEeeC-------CCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           14 LELSEEILQSMEVGIYLVTASD-------DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        14 ~~~~~~~i~~~~~~~~l~~~~~-------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      +......+.++++|+++++++.       ++.|.+||..+++.+..+.... .+..++|+|+++.++++...  ++.|.+
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~--~~~v~~  115 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-KPFGATINNTTQTLWFGNTV--NSAVTA  115 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-CCCSEEEETTTTEEEEEETT--TTEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-CcceEEECCCCCEEEEEecC--CCEEEE
Confidence            3445566889999998888874       5689999999999888876543 57889999999977776653  799999


Q ss_pred             EEccCceeeeecccccc---------cEEEEEEcCCCCEEEEcc--cCCeEEEEeCCcceeeceEEEeccceeEecCCCe
Q 036585           87 LSLHDNKYSRYFKGHHD---------RVVLLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL  155 (304)
Q Consensus        87 wd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  155 (304)
                      ||..+++.+..+..+..         .+.++.|+|+++++++++  .++.|.+||+++++....+.              
T Consensus       116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~--------------  181 (353)
T 3vgz_A          116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ--------------  181 (353)
T ss_dssp             EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC--------------
T ss_pred             EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec--------------
Confidence            99999988777765432         278899999999877765  47899999999887655443              


Q ss_pred             EEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC-CCCCcceEEEEcCCCcEEE
Q 036585          156 VFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-VSRNSTLEASFSPEGMFVI  234 (304)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~  234 (304)
                                     .+...+..++|+|+++++++++.++.|.+||+.+++....+.... .+...+..++|+|++++++
T Consensus       182 ---------------~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  246 (353)
T 3vgz_A          182 ---------------NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF  246 (353)
T ss_dssp             ---------------CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred             ---------------CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence                           122346779999999999999999999999999999888877422 2455677899999999877


Q ss_pred             EecC-CCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEec-Cc--eEEeccCCccc
Q 036585          235 SGSG-DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGS-SE--LSFWIPDLSKL  292 (304)
Q Consensus       235 ~~~~-dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d--~~iw~~~~~~~  292 (304)
                      +++. ++.|.+||+.+++.+..+....  ...++|+|++++++.++ .+  +.+|+.+..++
T Consensus       247 ~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          247 ITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             EEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            6654 5899999999999887776443  36799999999666555 34  88888865443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=4.8e-26  Score=182.17  Aligned_cols=240  Identities=9%  Similarity=0.083  Sum_probs=172.0

Q ss_pred             eeeEeecccCcEEEEeeCC-CeEEEEecC--Ccc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc---
Q 036585           18 EEILQSMEVGIYLVTASDD-ESIRLYDVT--AAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL---   89 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d-~~i~vw~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~---   89 (304)
                      ...+.++|+|++|++++.+ +.|++|++.  +++  .+..+..+. .+..++|+|+++.+++++..  ++.|.+||+   
T Consensus        40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~--~~~i~~~d~~~~  116 (343)
T 1ri6_A           40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYN--AGNVSVTRLEDG  116 (343)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETT--TTEEEEEEEETT
T ss_pred             CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecC--CCeEEEEECCCC
Confidence            4458899999999988886 899999997  444  344454444 78999999999988877653  788999999   


Q ss_pred             cCceeeeecccccccEEEEEEcCCCCEEEEcc-cCCeEEEEeCCc-ceeeceE--EEeccceeEecCCCeEEEecCCCeE
Q 036585           90 HDNKYSRYFKGHHDRVVLLSLCSSKDCFISGS-LDRTVLLWDQRA-EKCQGLL--RVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                      ...+....+..+ ..+.+++|+|+++++++++ .++.|++||+.+ ++.....  ....                     
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~---------------------  174 (343)
T 1ri6_A          117 LPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT---------------------  174 (343)
T ss_dssp             EEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC---------------------
T ss_pred             ccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc---------------------
Confidence            444455555433 4588899999999888776 889999999987 4332211  1100                     


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEee-CCCeEEEEEcCC--Cce--eEEEEeCCC---CCCcceEEEEcCCCcEEE-Ee
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFR--GTL--LSTYNVKPV---SRNSTLEASFSPEGMFVI-SG  236 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~--~~~--~~~~~~~~~---~~~~i~~~~~s~~~~~l~-~~  236 (304)
                           .....+..++|+|+++++++++ .++.|.+||+..  ++.  .......+.   ....+..++|+|++++|+ ++
T Consensus       175 -----~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~  249 (343)
T 1ri6_A          175 -----VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD  249 (343)
T ss_dssp             -----STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred             -----CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEe
Confidence                 1224567899999999776554 789999999953  433  222221111   123566899999998877 45


Q ss_pred             cCCCcEEEEecC--C--CceeeeeeccCCCCceEEeCCCCcEEEEecC-c--eEEeccC
Q 036585          237 SGDGSVHAWSVR--S--GKEVASWMSFDTEPPVIKWAPGSLMFVTGSS-E--LSFWIPD  288 (304)
Q Consensus       237 ~~dg~i~v~d~~--~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d--~~iw~~~  288 (304)
                      ..++.|++||+.  +  .+.+..+..+.. +..++|+|++++|++++. +  +.+|+++
T Consensus       250 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          250 RTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             TTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             cCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            578999999998  2  334445554444 899999999998888774 3  9999665

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.96  E-value=2.6e-26  Score=183.26  Aligned_cols=257  Identities=9%  Similarity=0.024  Sum_probs=193.6

Q ss_pred             cEEEEeeCCCeEEEEecCCcceeeeeccccc--ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc-c---
Q 036585           28 IYLVTASDDESIRLYDVTAATCLKTINSKKY--GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG-H---  101 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~-~---  101 (304)
                      +++++++.++.|++||+.+++.+..+.....  .+..++|+|+++.++++...  ++.|.+||+.+++.+..+.. +   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~   79 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK--SESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT--TTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC--CCeEEEEECCCCCeEeeEEcCCccc
Confidence            5789999999999999999998887764332  47899999999887666542  78999999999887766552 1   


Q ss_pred             -cccEEEEEEcCCCCEEEEcc------------cCCeEEEEeCCcceeeceEEEec-cceeEecCCCeEEEecCCCeEEE
Q 036585          102 -HDRVVLLSLCSSKDCFISGS------------LDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVFGYEKGPLDIF  167 (304)
Q Consensus       102 -~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  167 (304)
                       ...+..++|+|++++++++.            .++.|.+||+.+++....+.... ...+.+++++..+...++.+.+|
T Consensus        80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~~  159 (337)
T 1pby_B           80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVM  159 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEE
T ss_pred             ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCCeEEEE
Confidence             22567899999999888886            57999999999888776665432 33567888876443336778888


Q ss_pred             EecCCC--------CCceEEEEecCCcEEEEeeCCC------------------------eEEEEEcCCCceeEEEEeCC
Q 036585          168 SVGGDI--------SDANVVKFSNDGRLMLLTTMEG------------------------HIHVLDSFRGTLLSTYNVKP  215 (304)
Q Consensus       168 ~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg------------------------~i~~~d~~~~~~~~~~~~~~  215 (304)
                      ++....        .....+.|+|+++.+++.+..+                        .|.+||+.+++.. ..... 
T Consensus       160 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~-  237 (337)
T 1pby_B          160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR-  237 (337)
T ss_dssp             ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE-
T ss_pred             ECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC-
Confidence            764311        1112347889988776654332                        4689999998875 33322 


Q ss_pred             CCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          216 VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       216 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      .+...+..++|+|++++++++  ++.|++||+.+++.+..+.. ...+.+++|+|++++|++++.+  +.+|+.+..+
T Consensus       238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence            345677889999999999988  78999999999888777753 3567899999999988888766  9999986544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.96  E-value=1.6e-25  Score=179.73  Aligned_cols=243  Identities=13%  Similarity=0.155  Sum_probs=169.9

Q ss_pred             eeeEeecccCcEEEEeeC---CCeEEEEecCCcc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC-
Q 036585           18 EEILQSMEVGIYLVTASD---DESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-   91 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~---d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~-   91 (304)
                      ...+.++|+|+ |++++.   ++.|++|++.+++  .+..+..+...+..++|+|++++|++++..  ++.|.+|++.. 
T Consensus        42 p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~--~~~v~v~~~~~~  118 (347)
T 3hfq_A           42 PTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH--KGTAEVMKIAAD  118 (347)
T ss_dssp             CCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT--TTEEEEEEECTT
T ss_pred             cceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC--CCEEEEEEeCCC
Confidence            44588899999 555544   6899999997665  444555567788999999999999988842  89999999963 


Q ss_pred             c--eeeeeccc---------ccccEEEEEEcCCCCEEEEcccCCeEEEEeCC-cceeeceEEEeccceeEecCCCeEEEe
Q 036585           92 N--KYSRYFKG---------HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR-AEKCQGLLRVQGRPAAAYDDQGLVFGY  159 (304)
Q Consensus        92 ~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (304)
                      +  +.+..+..         +...+.+++|+|+++++++...++.|++|++. +++.........               
T Consensus       119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~---------------  183 (347)
T 3hfq_A          119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM---------------  183 (347)
T ss_dssp             SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC---------------
T ss_pred             CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc---------------
Confidence            2  22222221         12248899999999977777778999999998 333221111000               


Q ss_pred             cCCCeEEEEecCCCCCceEEEEecCCcEEEE-eeCCCeEEEEEcCC--CceeE--EEEeCCC---CCCcceEEEEcCCCc
Q 036585          160 EKGPLDIFSVGGDISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFR--GTLLS--TYNVKPV---SRNSTLEASFSPEGM  231 (304)
Q Consensus       160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~--~~~~~--~~~~~~~---~~~~i~~~~~s~~~~  231 (304)
                                 .....+..++|+|+|+++++ ...++.|.+|++..  ++...  .+...+.   ....+..++|+|||+
T Consensus       184 -----------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~  252 (347)
T 3hfq_A          184 -----------EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH  252 (347)
T ss_dssp             -----------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred             -----------CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence                       11234567999999996666 45688999999874  54322  2221111   114578899999999


Q ss_pred             EEEE-ecCCCcEEEEecCC---CceeeeeeccCCCCceEEeCCCCcEEEEecCc---eEEeccCC
Q 036585          232 FVIS-GSGDGSVHAWSVRS---GKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPDL  289 (304)
Q Consensus       232 ~l~~-~~~dg~i~v~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~  289 (304)
                      +|++ ...++.|.+|++..   .+.+..+..+...+..++|+|||++|++++.+   +.+|.++.
T Consensus       253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            8754 45689999999973   24455566666778999999999988887654   89996553

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=1.5e-25  Score=180.13  Aligned_cols=232  Identities=13%  Similarity=0.079  Sum_probs=183.0

Q ss_pred             eeeEeecccCcEEE-EeeCCCeEEEEecCCcceeeeeccccc---------ceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           18 EEILQSMEVGIYLV-TASDDESIRLYDVTAATCLKTINSKKY---------GVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        18 ~~~i~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ...+.++++|++++ +...++.|.+||..+++.+..+..+..         .+..++|+|+++.++++... .++.|.+|
T Consensus        91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~~i~~~  169 (353)
T 3vgz_A           91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG-KESVIWVV  169 (353)
T ss_dssp             CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-SSCEEEEE
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-CCceEEEE
Confidence            44578889998655 445579999999999998887776432         26889999999988887621 17889999


Q ss_pred             EccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585           88 SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF  167 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (304)
                      |+.+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+++....+.....                      
T Consensus       170 d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------------------  227 (353)
T 3vgz_A          170 DGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDD----------------------  227 (353)
T ss_dssp             ETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS----------------------
T ss_pred             cCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC----------------------
Confidence            9999998888775666688999999999999999999999999998877665543211                      


Q ss_pred             EecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEE
Q 036585          168 SVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAW  245 (304)
Q Consensus       168 ~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~  245 (304)
                         ++...+..++|+|+++++++++. ++.|.+||+.+++....+...   . + ..++|+|+++++++++ .++.|.+|
T Consensus       228 ---~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~-~-~~~~~s~dg~~l~v~~~~~~~v~~~  299 (353)
T 3vgz_A          228 ---GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP---E-S-LAVLFNPARNEAYVTHRQAGKVSVI  299 (353)
T ss_dssp             ---SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS---S-C-CCEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ---CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC---C-C-ceEEECCCCCEEEEEECCCCeEEEE
Confidence               23345678999999998777665 489999999999988888732   2 2 5689999999666554 68999999


Q ss_pred             ecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585          246 SVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       246 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      |+.+++.+..+... ..+.+++|+|++++|+.+..+
T Consensus       300 d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          300 DAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             ETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred             ECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence            99999888777644 467999999999977665544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.95  E-value=8.3e-26  Score=181.26  Aligned_cols=236  Identities=10%  Similarity=0.069  Sum_probs=175.6

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccc-cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      +.+.++++++++++.++.|++||+.+++.+..+..+. ..+..++|+|+++.++++...  ++.|.+||+.+++.+..+.
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~--~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH--YGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC--CCcEEEEeCCCCcEEEEEE
Confidence            3566778899999999999999999999888776543 257899999999977666532  8999999999988776665


Q ss_pred             cc------cccEEEEEEcCCCCEEEEcccC------------CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecC
Q 036585          100 GH------HDRVVLLSLCSSKDCFISGSLD------------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEK  161 (304)
Q Consensus       100 ~~------~~~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (304)
                      ..      ...+..++|+|+++++++++.+            +.|.+||+.+++........                  
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------------------  144 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF------------------  144 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE------------------
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec------------------
Confidence            32      2237789999999999998865            89999999886543322211                  


Q ss_pred             CCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC--------------------------
Q 036585          162 GPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP--------------------------  215 (304)
Q Consensus       162 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--------------------------  215 (304)
                               .+...+.+++|+|+|+ +++++.  .|++||+.+++....+....                          
T Consensus       145 ---------~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (349)
T 1jmx_B          145 ---------PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM  212 (349)
T ss_dssp             ---------ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred             ---------cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence                     0123466778888888 555433  48888887777665544211                          


Q ss_pred             ---------------------------------------CCCCcceEEEEcC-CCcEEEEecCCCcEEEEecCCCceeee
Q 036585          216 ---------------------------------------VSRNSTLEASFSP-EGMFVISGSGDGSVHAWSVRSGKEVAS  255 (304)
Q Consensus       216 ---------------------------------------~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~  255 (304)
                                                             .....+..++|+| ++++++++  ++.|++||+.+++.+..
T Consensus       213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~  290 (349)
T 1jmx_B          213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA  290 (349)
T ss_dssp             EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE
T ss_pred             eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE
Confidence                                                   0112345678889 99999988  88999999999988777


Q ss_pred             eeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          256 WMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       256 ~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      +.. ...+.+++|+|++++|++++.+  +.+|+.+..+
T Consensus       291 ~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          291 ANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             EEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             EcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence            753 3457899999999888877665  9999986543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=8.2e-27  Score=204.67  Aligned_cols=255  Identities=8%  Similarity=0.014  Sum_probs=170.0

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeeccccc---ceeEEEEccCCCeEEEEecCC------CCCceEEEE
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKY---GVDLVCFTSHPTTVIYSSKNG------WDESLRLLS   88 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~~~------~d~~i~vwd   88 (304)
                      ...+.|+|+|+++++ +.||.|++||+.+++....+..|..   .+.+++|||||++|++++...      .++.+++||
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            456789999998776 7899999999999988888877764   499999999999999997521      137889999


Q ss_pred             ccCcee--eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--------------------c
Q 036585           89 LHDNKY--SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--------------------P  146 (304)
Q Consensus        89 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------------------~  146 (304)
                      +.+++.  +.....|...+..++|+|||+.|+.++. +.|++||+.+++..........                    .
T Consensus        98 ~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~  176 (723)
T 1xfd_A           98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (723)
T ss_dssp             SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             CCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcc
Confidence            998875  2222345556889999999999998876 7999999988766543322111                    1


Q ss_pred             eeEecCCCeEEEe---cCCCeEEEEecC----CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC---C
Q 036585          147 AAAYDDQGLVFGY---EKGPLDIFSVGG----DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---V  216 (304)
Q Consensus       147 ~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---~  216 (304)
                      .+.++|++..+.+   +...+.+|.+..    +...+..+.|.++|..    ..+..|++||+.+++....+....   .
T Consensus       177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~  252 (723)
T 1xfd_A          177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRM  252 (723)
T ss_dssp             EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred             eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC----CCeeEEEEEECCCCceeEEeeCCccCCC
Confidence            2334444322211   112222232211    1112333344333321    112389999998887544444110   1


Q ss_pred             CCCcceEEEEcCCCcEEEEecC----CCcEEEEecCCCceeeeeec-cCCCC----ceEEeCCCCcEEEEe
Q 036585          217 SRNSTLEASFSPEGMFVISGSG----DGSVHAWSVRSGKEVASWMS-FDTEP----PVIKWAPGSLMFVTG  278 (304)
Q Consensus       217 ~~~~i~~~~~s~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~-~~~~i----~~~~~~~~~~~l~s~  278 (304)
                      +...+..++|||||++|++...    +..|++||+.+++....+.. +...+    ..++|+|||+.|+..
T Consensus       253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            2567889999999998876642    35799999999887665543 33444    388999999977754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=1.6e-25  Score=195.90  Aligned_cols=258  Identities=13%  Similarity=0.159  Sum_probs=184.3

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecCCccee-eeecccc-----------------cceeEEEEccCCCeEEEEecCCCCC
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVTAATCL-KTINSKK-----------------YGVDLVCFTSHPTTVIYSSKNGWDE   82 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~~~~d~   82 (304)
                      +.|+  |+.+++++.|+ | +||+.+++.+ ..+..+.                 ..+.+++|+|+ +.++++.    ++
T Consensus        31 ~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~----~~  101 (706)
T 2z3z_A           31 LQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT----QG  101 (706)
T ss_dssp             CEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE----TT
T ss_pred             CcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE----CC
Confidence            5666  67777777788 8 9999998873 4444433                 46999999999 7777775    89


Q ss_pred             ceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCc-----ceeeceEEEecc------------
Q 036585           83 SLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA-----EKCQGLLRVQGR------------  145 (304)
Q Consensus        83 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~------------  145 (304)
                      .|++||+.+++.... ..+...+.+++|+|+|+.|+++ .++.|++||+.+     ++..........            
T Consensus       102 ~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee  179 (706)
T 2z3z_A          102 GLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE  179 (706)
T ss_dssp             EEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred             EEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence            999999998876544 3466778899999999999985 689999999988     665443322222            


Q ss_pred             ----ceeEecCCCeEEEecC-----------------------------------CCeEEEEecC-----------CCCC
Q 036585          146 ----PAAAYDDQGLVFGYEK-----------------------------------GPLDIFSVGG-----------DISD  175 (304)
Q Consensus       146 ----~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~-----------~~~~  175 (304)
                          ..+.++|++..+.+..                                   ..+.+|++..           +...
T Consensus       180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  259 (706)
T 2z3z_A          180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF  259 (706)
T ss_dssp             TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred             cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence                4677899986543322                                   3455665432           3355


Q ss_pred             ceEEEEecCCcEEEEeeCCC-----eEEEEEcCCCceeEEEEeC--CCCCCcceEEEEcC--CCcEEEEecCCCcEEEEe
Q 036585          176 ANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVK--PVSRNSTLEASFSP--EGMFVISGSGDGSVHAWS  246 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~--~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~v~d  246 (304)
                      +..++|+|||+.|++++.++     .|++||+.+++....+...  ......+..++|+|  ||+++++++.|+.+++|+
T Consensus       260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~  339 (706)
T 2z3z_A          260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL  339 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred             EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence            78999999999999987765     8999999998433333211  11112346789999  999999999999999998


Q ss_pred             cC-CCceeeeeeccCCCCce-EEeCCCCcEEEEecCc-----eEEeccCC
Q 036585          247 VR-SGKEVASWMSFDTEPPV-IKWAPGSLMFVTGSSE-----LSFWIPDL  289 (304)
Q Consensus       247 ~~-~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~d-----~~iw~~~~  289 (304)
                      +. +++.+..+..+...+.. ++|+|+++.|+.++.+     .+||.++.
T Consensus       340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred             EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence            86 67777788778777876 7999999877665543     47776654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.95  E-value=1.2e-25  Score=185.05  Aligned_cols=199  Identities=10%  Similarity=0.084  Sum_probs=150.8

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcc----------eeee-----ecccccceeEEEEccCCCeEE----EEecC
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAAT----------CLKT-----INSKKYGVDLVCFTSHPTTVI----YSSKN   78 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~----------~~~~-----~~~~~~~v~~~~~~~~~~~l~----~~~~~   78 (304)
                      ...+.+++.+.++++++.++ +++|+.....          .+..     ...+...|.+++|+|++++|+    +++. 
T Consensus        39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~-  116 (434)
T 2oit_A           39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY-  116 (434)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT-
T ss_pred             ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC-
Confidence            34577788889999999887 8998754211          0110     112445799999999999999    5555 


Q ss_pred             CCCCceEEEEccCc--------e---eeeecccccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccc
Q 036585           79 GWDESLRLLSLHDN--------K---YSRYFKGHHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP  146 (304)
Q Consensus        79 ~~d~~i~vwd~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  146 (304)
                        |+.|++||+.++        +   ....+.+|...|.+++|+|+ +.+|++++.||+|++||++++......      
T Consensus       117 --d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~------  188 (434)
T 2oit_A          117 --GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT------  188 (434)
T ss_dssp             --EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE------
T ss_pred             --CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec------
Confidence              999999999765        1   14556779999999999997 789999999999999999987443222      


Q ss_pred             eeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC----CCCcce
Q 036585          147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV----SRNSTL  222 (304)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~~~~i~  222 (304)
                                             .+|...+.+++|+|+|++|++|+.||.|++||++ ++....+..+..    |...+.
T Consensus       189 -----------------------~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~  244 (434)
T 2oit_A          189 -----------------------LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL  244 (434)
T ss_dssp             -----------------------ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred             -----------------------cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence                                   1356789999999999999999999999999998 555555543221    233899


Q ss_pred             EEEEcCCCcEEEEe-cCCC------cEEEEecCCC
Q 036585          223 EASFSPEGMFVISG-SGDG------SVHAWSVRSG  250 (304)
Q Consensus       223 ~~~~s~~~~~l~~~-~~dg------~i~v~d~~~~  250 (304)
                      +++|++++.++++. ..+|      .+++|++++.
T Consensus       245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            99999998887553 2343      3899999764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=8.4e-25  Score=174.53  Aligned_cols=235  Identities=11%  Similarity=0.023  Sum_probs=174.2

Q ss_pred             ceeeEeecccCcEE-EEeeCCCeEEEEecCCcceeeeeccc-----ccceeEEEEccCCCeEEEEecC------C---CC
Q 036585           17 SEEILQSMEVGIYL-VTASDDESIRLYDVTAATCLKTINSK-----KYGVDLVCFTSHPTTVIYSSKN------G---WD   81 (304)
Q Consensus        17 ~~~~i~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~------~---~d   81 (304)
                      ....+.++++|+++ ++++.++.|.+||+.+++.+..+...     ...+..++|+|+++.++++...      .   .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            35678899999765 45556789999999999887766532     2367889999999999988510      0   07


Q ss_pred             CceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec-cceeEecCCCeEE--E
Q 036585           82 ESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDDQGLVF--G  158 (304)
Q Consensus        82 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~  158 (304)
                      +.|.+||+.+++.+..+.. ...+.+++|+|++++++++  ++.|++||+++++....+.... .....+++++..+  .
T Consensus       115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  191 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeee
Confidence            9999999999887776663 4567889999999988877  6889999999888765554332 1222444444211  0


Q ss_pred             ecCC------------------------CeEEEE----------ecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585          159 YEKG------------------------PLDIFS----------VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       159 ~~~~------------------------~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  204 (304)
                      ....                        .+.+++          +..+...+..++|+|++++++++  ++.|++||+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~  269 (337)
T 1pby_B          192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred             ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence            0000                        122333          22334566789999999999888  78999999999


Q ss_pred             CceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccC
Q 036585          205 GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD  260 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  260 (304)
                      ++....+.    ....+.+++|+|++++|++++.++.|++||+.+++.+..+..+.
T Consensus       270 ~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          270 NASIKRVP----LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             TEEEEEEE----CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             CcCcceec----CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence            98888776    33567889999999999999999999999999999888876553

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=9.5e-26  Score=185.57  Aligned_cols=216  Identities=12%  Similarity=0.091  Sum_probs=160.7

Q ss_pred             CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee----------eee-----cccc
Q 036585           37 ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY----------SRY-----FKGH  101 (304)
Q Consensus        37 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~----------~~~-----~~~~  101 (304)
                      +.+++|+... .      .+...++.+++++++..+++++.   ++ +++|+......          +..     ...+
T Consensus        23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~---dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (434)
T 2oit_A           23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGA---SG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPM   91 (434)
T ss_dssp             CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEET---TE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECC
T ss_pred             eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECC---CE-EEEEEchHhhhhcccccCcccccccCccccccC
Confidence            4688887531 1      12346889999999999999986   66 89987642110          000     1124


Q ss_pred             cccEEEEEEcCCCCEEE----EcccCCeEEEEeCCcce-----eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585          102 HDRVVLLSLCSSKDCFI----SGSLDRTVLLWDQRAEK-----CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD  172 (304)
Q Consensus       102 ~~~v~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (304)
                      ...|.+++|+|++++|+    +++.|+.|++||+++..     ....+.                       .+..+.+|
T Consensus        92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~-----------------------~~~~~~~h  148 (434)
T 2oit_A           92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFA-----------------------YHKLLKDA  148 (434)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSE-----------------------EEECCCSG
T ss_pred             CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceee-----------------------eeeccCCC
Confidence            56799999999999999    89999999999997651     100000                       01122357


Q ss_pred             CCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc
Q 036585          173 ISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK  251 (304)
Q Consensus       173 ~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~  251 (304)
                      ...|.+++|+|+ +.+|++++.||+|++||++++.......   .|...+.+++|+|+|++|++|+.||.|++||++ ++
T Consensus       149 ~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~---~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~  224 (434)
T 2oit_A          149 GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL---PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ  224 (434)
T ss_dssp             GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE---CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC
T ss_pred             CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc---CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc
Confidence            889999999998 8899999999999999999986655554   578899999999999999999999999999998 55


Q ss_pred             eeeeeecc-------CCCCceEEeCCCCcEEEEec-Cc--------eEEeccCCc
Q 036585          252 EVASWMSF-------DTEPPVIKWAPGSLMFVTGS-SE--------LSFWIPDLS  290 (304)
Q Consensus       252 ~~~~~~~~-------~~~i~~~~~~~~~~~l~s~~-~d--------~~iw~~~~~  290 (304)
                      ....+..|       ...+.+++|++++.++++.+ .+        +++|++...
T Consensus       225 ~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          225 EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            55555433       23789999999998885433 21        788988654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.94  E-value=1.6e-23  Score=168.89  Aligned_cols=243  Identities=11%  Similarity=0.172  Sum_probs=167.6

Q ss_pred             eeEeecccCcEEEEeeCC----CeEEEEecCC--cce--eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585           19 EILQSMEVGIYLVTASDD----ESIRLYDVTA--ATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   90 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d----~~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~   90 (304)
                      ..+.++|+|++|++++.+    +.|.+|++..  ++.  +.....+......+++  +++.++++...  ++.|.+|++.
T Consensus        53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~--~~~v~~~~~~  128 (361)
T 3scy_A           53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYS--GGSITVFPIG  128 (361)
T ss_dssp             CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETT--TTEEEEEEBC
T ss_pred             ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECC--CCEEEEEEeC
Confidence            447899999999999886    7999998875  432  3333334456677777  88888887753  8899999997


Q ss_pred             Cceeeeecc--------------cccccEEEEEEcCCCCEEEEcc-cCCeEEEEeCCccee------eceE-EEecccee
Q 036585           91 DNKYSRYFK--------------GHHDRVVLLSLCSSKDCFISGS-LDRTVLLWDQRAEKC------QGLL-RVQGRPAA  148 (304)
Q Consensus        91 ~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------~~~~-~~~~~~~~  148 (304)
                      ....+..+.              .+...+.+++|+|+++++++++ .++.|++|++.....      .... ...     
T Consensus       129 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~-----  203 (361)
T 3scy_A          129 QDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE-----  203 (361)
T ss_dssp             TTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE-----
T ss_pred             CCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc-----
Confidence            543322211              1223468899999999665554 588999999875442      1110 000     


Q ss_pred             EecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee-CCCeEEEEEcCCCceeE--EEEeCCCCCCcceEEE
Q 036585          149 AYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLS--TYNVKPVSRNSTLEAS  225 (304)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~--~~~~~~~~~~~i~~~~  225 (304)
                                       ... .........++|+|+|+++++++ .++.|.+||+.+++...  .+.....+......++
T Consensus       204 -----------------~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~  265 (361)
T 3scy_A          204 -----------------AFK-VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIH  265 (361)
T ss_dssp             -----------------EEE-CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEE
T ss_pred             -----------------cee-cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEE
Confidence                             000 01234567899999999887777 68999999998775533  3332223334567999


Q ss_pred             EcCCCcEEEEecCC--CcEEEEecC--CCc--eeeeeeccCCCCceEEeCCCCcEEEEecCc---eEEeccCC
Q 036585          226 FSPEGMFVISGSGD--GSVHAWSVR--SGK--EVASWMSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPDL  289 (304)
Q Consensus       226 ~s~~~~~l~~~~~d--g~i~v~d~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~  289 (304)
                      |+|||++|+++..+  +.|.+|++.  +++  .+..+.. ...+..++|+|+|++|++++.+   +.+|.++.
T Consensus       266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          266 LSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence            99999998776654  889999995  444  3444444 5678899999999988888743   89977764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=1.5e-24  Score=173.44  Aligned_cols=230  Identities=12%  Similarity=0.162  Sum_probs=158.9

Q ss_pred             cEEE-EeeCCCeEEEEecC-Cc--ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc--Cce--eeeecc
Q 036585           28 IYLV-TASDDESIRLYDVT-AA--TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH--DNK--YSRYFK   99 (304)
Q Consensus        28 ~~l~-~~~~d~~i~vw~~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~--~~~--~~~~~~   99 (304)
                      ++++ +++.|+.|++|++. ++  +.+..+ .+...+.+++|+|++++|++++..  ++.|.+|++.  +++  .+..+.
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~   81 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRP--EFRVLAYRIAPDDGALTFAAESA   81 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecC--CCeEEEEEecCCCCceeeccccc
Confidence            4444 44789999999985 33  233333 466688999999999999998872  4999999997  444  333444


Q ss_pred             cccccEEEEEEcCCCCEEEEcc-cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585          100 GHHDRVVLLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV  178 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  178 (304)
                      .+. .+..++|+|+++++++++ .++.|.+||+..+.........                           .....+.+
T Consensus        82 ~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------------------~~~~~~~~  133 (343)
T 1ri6_A           82 LPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV---------------------------EGLDGCHS  133 (343)
T ss_dssp             CSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE---------------------------CCCTTBCC
T ss_pred             cCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc---------------------------cCCCCceE
Confidence            333 788999999999776665 4889999999532221111110                           12235788


Q ss_pred             EEEecCCcEEEEee-CCCeEEEEEcCC-CceeEEE--EeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecCC--Cc
Q 036585          179 VKFSNDGRLMLLTT-MEGHIHVLDSFR-GTLLSTY--NVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVRS--GK  251 (304)
Q Consensus       179 ~~~~~~~~~l~~~~-~dg~i~~~d~~~-~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~--~~  251 (304)
                      ++|+|+++++++++ .++.|++||+.+ ++.....  .........+..++|+|++++++++ ..++.|.+||+..  ++
T Consensus       134 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~  213 (343)
T 1ri6_A          134 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN  213 (343)
T ss_dssp             CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred             EEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence            99999999888877 899999999987 6544322  2111234577889999999977655 4789999999953  43


Q ss_pred             e--eeeee---cc---CCCCceEEeCCCCcEEEEec-Cc--eEEeccC
Q 036585          252 E--VASWM---SF---DTEPPVIKWAPGSLMFVTGS-SE--LSFWIPD  288 (304)
Q Consensus       252 ~--~~~~~---~~---~~~i~~~~~~~~~~~l~s~~-~d--~~iw~~~  288 (304)
                      .  ...+.   ..   ...+..++|+|++++|+.+. .+  +.+|+++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            2  22222   11   22455799999998777444 44  9999987

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=1.1e-24  Score=191.76  Aligned_cols=265  Identities=10%  Similarity=0.083  Sum_probs=188.3

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ..+.++|||++|++++. +.|++||+.+++  ....+..|...+..++|+|||+.|++++    ++.|++||+.+++...
T Consensus       112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~----~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR----GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             CCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE----TTEEEEEETTTTEEEE
T ss_pred             ceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe----CCcEEEEecCCCCEEE
Confidence            45789999999999987 899999999873  4556777878899999999999999998    6799999999887666


Q ss_pred             eccccccc----------------EEEEEEcCCCCEEEEcccCC---------------------------------eEE
Q 036585           97 YFKGHHDR----------------VVLLSLCSSKDCFISGSLDR---------------------------------TVL  127 (304)
Q Consensus        97 ~~~~~~~~----------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i~  127 (304)
                      ....+...                +..+.|+|||++|++++.|+                                 .|+
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            55444332                47799999999999987765                                 889


Q ss_pred             EEeCCc-ceeeceEEE----eccceeEecCCCeEEEec-------CCCeEEEEecC---------CCC----CceEEEEe
Q 036585          128 LWDQRA-EKCQGLLRV----QGRPAAAYDDQGLVFGYE-------KGPLDIFSVGG---------DIS----DANVVKFS  182 (304)
Q Consensus       128 iwd~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---------~~~----~v~~~~~~  182 (304)
                      +||+.+ ++.......    .....+.+ +++..+...       ...+.+|++..         +..    .+..++|+
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence            999987 664432211    11224567 776443211       22344444332         111    34689999


Q ss_pred             cCCcEEEEeeCCCeEEEEEcC-CCceeEEEEeCCCCCCcceEE-EEcCCCcEEE-EecCCC--cEEEEecCC-Cceeeee
Q 036585          183 NDGRLMLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEA-SFSPEGMFVI-SGSGDG--SVHAWSVRS-GKEVASW  256 (304)
Q Consensus       183 ~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~-~~~~dg--~i~v~d~~~-~~~~~~~  256 (304)
                      |||+++++++.+|.+++|.+. +++ ...+.   .+...+..+ .|+|+++.|+ +++.++  .+++|++.. ++....+
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~---~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l  421 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRIDSKGK-AAALT---HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRL  421 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEECSSSC-EEESC---CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEEC
T ss_pred             CCCeEEEEecCCCccEEEEEcCCCC-eeeee---ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeec
Confidence            999988889999987777765 344 44443   456677777 5999998775 455555  899999864 5555666


Q ss_pred             eccCCCCceEEeCCCCcEEEEecCc------eEEeccCCccccc
Q 036585          257 MSFDTEPPVIKWAPGSLMFVTGSSE------LSFWIPDLSKLGA  294 (304)
Q Consensus       257 ~~~~~~i~~~~~~~~~~~l~s~~~d------~~iw~~~~~~~~~  294 (304)
                      .. ...+..++|+||+++|+....+      +.+|+.+.+.++.
T Consensus       422 ~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~~  464 (741)
T 2ecf_A          422 SK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEKIAT  464 (741)
T ss_dssp             CC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCEEEC
T ss_pred             cc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEEE
Confidence            54 5668899999999988766543      5666655544433

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=2.8e-24  Score=188.16  Aligned_cols=243  Identities=10%  Similarity=0.100  Sum_probs=176.8

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCC-----cceeeeecccccc--------------eeEEEEccCCCeEEEEecC-
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTA-----ATCLKTINSKKYG--------------VDLVCFTSHPTTVIYSSKN-   78 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~~~-   78 (304)
                      ..+.++|+|++|+++ .++.|++|++.+     ++.......+...              +.+++|+||+++|++++.+ 
T Consensus       124 ~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~  202 (706)
T 2z3z_A          124 ASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQ  202 (706)
T ss_dssp             TTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEEC
T ss_pred             cCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECC
Confidence            447899999999995 679999999998     7766555444332              4889999999999998720 


Q ss_pred             -----------------------------CCCCceEEEEccCceeeeecc--cccccEEEEEEcCCCCEEEEcccCC---
Q 036585           79 -----------------------------GWDESLRLLSLHDNKYSRYFK--GHHDRVVLLSLCSSKDCFISGSLDR---  124 (304)
Q Consensus        79 -----------------------------~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg---  124 (304)
                                                   ..+..|++||+.+++......  .|...+.+++|+|+++.|++++.++   
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  282 (706)
T 2z3z_A          203 SMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQN  282 (706)
T ss_dssp             TTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSC
T ss_pred             CCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCC
Confidence                                         015789999999887654442  4667899999999999999887765   


Q ss_pred             --eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec--CCcEEEEeeCCCeEEEE
Q 036585          125 --TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN--DGRLMLLTTMEGHIHVL  200 (304)
Q Consensus       125 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~  200 (304)
                        .|++||+.+++....+......                        .....+..++|+|  +|++++++..+|.+++|
T Consensus       283 ~~~v~~~d~~~g~~~~~~~~~~~~------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~  338 (706)
T 2z3z_A          283 ECKVNAYDAETGRFVRTLFVETDK------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY  338 (706)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEECS------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred             eeEEEEEECCCCceeeEEEEccCC------------------------CeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence              8999999987333222211000                        0112346789999  99999999999999999


Q ss_pred             EcC-CCceeEEEEeCCCCCCcceE-EEEcCCCcEEEEec-CCC----cEEEEecCCCceeeeeeccCCCCceEEeCCCCc
Q 036585          201 DSF-RGTLLSTYNVKPVSRNSTLE-ASFSPEGMFVISGS-GDG----SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL  273 (304)
Q Consensus       201 d~~-~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~-~dg----~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  273 (304)
                      ++. +++....+.   .+...+.. ++|+|+++.|+.++ .++    .|+.||+.+++ ...+. +...+.+++|+|||+
T Consensus       339 ~~~~~~~~~~~l~---~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~  413 (706)
T 2z3z_A          339 LYDTTGRLIRQVT---KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGS  413 (706)
T ss_dssp             EEETTSCEEEECC---CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSS
T ss_pred             EEECCCCEEEecC---CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCC
Confidence            876 555555554   45566766 79999998876554 444    57777777665 33443 667789999999999


Q ss_pred             EEEEecCc------eEEeccCCcc
Q 036585          274 MFVTGSSE------LSFWIPDLSK  291 (304)
Q Consensus       274 ~l~s~~~d------~~iw~~~~~~  291 (304)
                      +++..+.+      +.+|+.+..+
T Consensus       414 ~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          414 AIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEEEecCCCCCcEEEEEECCCCe
Confidence            88766432      7788776554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.93  E-value=1.1e-24  Score=186.59  Aligned_cols=230  Identities=14%  Similarity=0.085  Sum_probs=168.9

Q ss_pred             ceeeEeecccCcEEEEeeC-CCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC---c
Q 036585           17 SEEILQSMEVGIYLVTASD-DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD---N   92 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~---~   92 (304)
                      ....+.+++||++||+++. ||+++||++.+++..+....+...+..++|+|+ +.++++...+.+...++|.+..   +
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g  101 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG  101 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence            3456889999999999887 999999999766654444334368999999999 6666555311155566665543   2


Q ss_pred             eeeeecccccccEEEEEEcCCCC--EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           93 KYSRYFKGHHDRVVLLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      ... .+.... .+...+|+|+++  .+++++. +.+.+||+.+++.......                            
T Consensus       102 ~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~----------------------------  150 (582)
T 3o4h_A          102 EEQ-RLEAVK-PMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELARL----------------------------  150 (582)
T ss_dssp             CCE-ECTTSC-SBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEEE----------------------------
T ss_pred             ccc-cccCCC-CceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeecC----------------------------
Confidence            222 333222 234567888775  3444444 4455999988765443321                            


Q ss_pred             CCCCCceEEEEecCCcEEEEeeCC----CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC--cEEE
Q 036585          171 GDISDANVVKFSNDGRLMLLTTME----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--SVHA  244 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~v  244 (304)
                        ..  .+++|+|||+++++++.+    +.|++||+.+++.. .+.   .+...+..++|||||++|+++..++  .|++
T Consensus       151 --~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~  222 (582)
T 3o4h_A          151 --PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD---SGEGSFSSASISPGMKVTAGLETAREARLVT  222 (582)
T ss_dssp             --SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC---CSSCEEEEEEECTTSCEEEEEECSSCEEEEE
T ss_pred             --CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee---cCCCccccceECCCCCEEEEccCCCeeEEEE
Confidence              11  679999999999988776    78999999888765 343   4677889999999999999888888  8999


Q ss_pred             EecCCCceeeeeeccCCCCceEE--------eCCCCcEEEEecCc--eEEecc
Q 036585          245 WSVRSGKEVASWMSFDTEPPVIK--------WAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~s~~~d--~~iw~~  287 (304)
                      ||+.+++.. .+..|...+..++        |+|||.++++++.+  +++|.+
T Consensus       223 ~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          223 VDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             EcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            999988877 7777877788888        99999888888877  899988

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=1.1e-24  Score=191.30  Aligned_cols=261  Identities=10%  Similarity=0.035  Sum_probs=168.0

Q ss_pred             eeEeecccCcEEEEeeCC---------CeEEEEecCCcce--eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           19 EILQSMEVGIYLVTASDD---------ESIRLYDVTAATC--LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d---------~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ..+.++|||++|++++.+         +.+.+||+.+++.  +.....|...+..++|||||+.|++++    ++.|++|
T Consensus        64 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~----~~~i~~~  139 (723)
T 1xfd_A           64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF----ENNIYYC  139 (723)
T ss_dssp             SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE----TTEEEEE
T ss_pred             ceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEE----CCeEEEE
Confidence            458899999999999874         7788999998875  222234444588999999999999998    6799999


Q ss_pred             EccCceeeeecccccccE------------------EEEEEcCCCCEEEEcccC-CeEEEEeCCcceeeceEEEecccee
Q 036585           88 SLHDNKYSRYFKGHHDRV------------------VLLSLCSSKDCFISGSLD-RTVLLWDQRAEKCQGLLRVQGRPAA  148 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~  148 (304)
                      |+.+++.......+...+                  .+++|+|||+.|++++.| +.+.+|++........   .....+
T Consensus       140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  216 (723)
T 1xfd_A          140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY---PTVKPY  216 (723)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS---CCCEEE
T ss_pred             ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCC---Ccceec
Confidence            999887766555444333                  789999999999988754 3455555432111000   000111


Q ss_pred             EecCCCeEEEecCCCeEEEEec---------C------CCCCceEEEEecCCcEEEEeeC----CCeEEEEEcCCCceeE
Q 036585          149 AYDDQGLVFGYEKGPLDIFSVG---------G------DISDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGTLLS  209 (304)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~---------~------~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~  209 (304)
                      .+.+++..  .....+.+|++.         .      +...+..++|+|||+++++...    +..|++||+.+++...
T Consensus       217 ~~~~~G~~--~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~  294 (723)
T 1xfd_A          217 HYPKAGSE--NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK  294 (723)
T ss_dssp             ECCBTTSC--CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             cCCCCCCC--CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence            11111100  000112222211         1      2346788999999998877643    3579999999988776


Q ss_pred             EEEeCCCCCCcc----eEEEEcCCCcEEEE--ecCCC------cEEEEe-cCCCce--eeeeeccCCCCce-EEeCCCCc
Q 036585          210 TYNVKPVSRNST----LEASFSPEGMFVIS--GSGDG------SVHAWS-VRSGKE--VASWMSFDTEPPV-IKWAPGSL  273 (304)
Q Consensus       210 ~~~~~~~~~~~i----~~~~~s~~~~~l~~--~~~dg------~i~v~d-~~~~~~--~~~~~~~~~~i~~-~~~~~~~~  273 (304)
                      .+...  +...+    ..++|+|||+.|+.  +..++      .|++|| ...++.  ...+..+...+.. ++|+|||+
T Consensus       295 ~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~  372 (723)
T 1xfd_A          295 KHEDE--SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN  372 (723)
T ss_dssp             EEEEE--CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT
T ss_pred             EEEec--cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC
Confidence            65421  22332    36899999997775  44566      577777 344441  4555444444554 69999999


Q ss_pred             EEEEecC----c-eEEeccCCc
Q 036585          274 MFVTGSS----E-LSFWIPDLS  290 (304)
Q Consensus       274 ~l~s~~~----d-~~iw~~~~~  290 (304)
                      .|+..+.    . ++||.++..
T Consensus       373 ~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          373 KIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             EEEEEESSSCTTCCEEEEECSS
T ss_pred             EEEEEEcCCCCcceEEEEEeCC
Confidence            8875543    2 889988753

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=2e-24  Score=196.25  Aligned_cols=226  Identities=12%  Similarity=0.082  Sum_probs=184.9

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecc-----------cccceeEEEEc-cCCCeEEEEecCCCCCceEEE
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINS-----------KKYGVDLVCFT-SHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ...++|+|++|+++. ++.|.+|++...+ +..+..           |...+..++|+ |+++.+++++    ++.|.+|
T Consensus       249 ~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~----~~~i~~~  322 (1045)
T 1k32_A          249 PRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS----RGQAFIQ  322 (1045)
T ss_dssp             EEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE----TTEEEEE
T ss_pred             eeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE----cCEEEEE
Confidence            468899999999884 8899999985443 335554           34478999999 9999999988    7899999


Q ss_pred             EccCceeeeecccccc-cEEEEEEcCCCCEEEEcccCCeEE-EEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           88 SLHDNKYSRYFKGHHD-RVVLLSLCSSKDCFISGSLDRTVL-LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                      ++.+++... +..|.. .+..++|+ +++.+++++.+..+. +||+.+++.....                         
T Consensus       323 ~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-------------------------  375 (1045)
T 1k32_A          323 DVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-------------------------  375 (1045)
T ss_dssp             CTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-------------------------
T ss_pred             cCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec-------------------------
Confidence            998876544 556777 89999999 999999988888888 9998765432211                         


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC-----
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-----  240 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----  240 (304)
                           .+...+..++|+|||++|++++.++.|++||+.+++......   .+...+..++|||||++|++++.++     
T Consensus       376 -----~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~---~~~~~v~~~~~SpDG~~la~~~~~~~~~~~  447 (1045)
T 1k32_A          376 -----ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER---SREAMITDFTISDNSRFIAYGFPLKHGETD  447 (1045)
T ss_dssp             -----CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred             -----CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc---CCCCCccceEECCCCCeEEEEecCcccccc
Confidence                 244678899999999999999999999999999998877775   5778889999999999998887644     


Q ss_pred             -----cEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585          241 -----SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       241 -----~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~  287 (304)
                           .|++||+.+++ +..+..|...+..++|+|||++|++++.+  ..+|+.
T Consensus       448 ~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          448 GYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             SCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             CCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence                 89999998877 66777788888999999999999988876  566653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.93  E-value=1.1e-23  Score=169.97  Aligned_cols=247  Identities=7%  Similarity=0.004  Sum_probs=171.5

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecC-Ccceeeeeccc-ccceeEEEEccCCCe--EEEEe-------------cCCC
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVT-AATCLKTINSK-KYGVDLVCFTSHPTT--VIYSS-------------KNGW   80 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~~~~   80 (304)
                      ...+.++|+|++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++  ++++.             .   
T Consensus        42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~---  117 (365)
T 1jof_A           42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF---  117 (365)
T ss_dssp             CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS---
T ss_pred             CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC---
Confidence            4468889999999999888 99999997 77665433211 123566899999995  33442             3   


Q ss_pred             CCceEEEEcc-Cceeeeecc----cccccEEEEEEcCCCCEEEEcc-cCCeEEEEeCC-cceeeceEEEeccceeEecCC
Q 036585           81 DESLRLLSLH-DNKYSRYFK----GHHDRVVLLSLCSSKDCFISGS-LDRTVLLWDQR-AEKCQGLLRVQGRPAAAYDDQ  153 (304)
Q Consensus        81 d~~i~vwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~  153 (304)
                      ++.+.+|++. +++....+.    .+...+.+++|+|+|++++++. .++.|++||+. +++........          
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~----------  187 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD----------  187 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE----------
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe----------
Confidence            8899999997 455443333    2456789999999999888765 46799999998 55432211110          


Q ss_pred             CeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcC--CCceeE---EEEeCCC----CCC----
Q 036585          154 GLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSF--RGTLLS---TYNVKPV----SRN----  219 (304)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~--~~~~~~---~~~~~~~----~~~----  219 (304)
                                     ...+...+..++|+|+|+++++++. ++.|.+|++.  +++...   .+...+.    +..    
T Consensus       188 ---------------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~  252 (365)
T 1jof_A          188 ---------------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGK  252 (365)
T ss_dssp             ---------------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred             ---------------cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccc
Confidence                           0012345788999999999888765 6899999865  565432   2332111    111    


Q ss_pred             --cceEEE-EcCCCcEEEEecCCC------cEEEEecC-CCceee---eeeccCCCCceEEeCC---CCcEEEEecCc--
Q 036585          220 --STLEAS-FSPEGMFVISGSGDG------SVHAWSVR-SGKEVA---SWMSFDTEPPVIKWAP---GSLMFVTGSSE--  281 (304)
Q Consensus       220 --~i~~~~-~s~~~~~l~~~~~dg------~i~v~d~~-~~~~~~---~~~~~~~~i~~~~~~~---~~~~l~s~~~d--  281 (304)
                        .+..++ |+|||++|++++.+.      .|.+|++. +++...   ....+...+..++|+|   ||++|++++.+  
T Consensus       253 ~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~  332 (365)
T 1jof_A          253 GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG  332 (365)
T ss_dssp             BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred             ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence              478899 999999988775432      79999996 566433   2333556688999999   89999988754  


Q ss_pred             -eEEeccCCcccc
Q 036585          282 -LSFWIPDLSKLG  293 (304)
Q Consensus       282 -~~iw~~~~~~~~  293 (304)
                       +++|+++.+.+.
T Consensus       333 ~v~v~~~~~~~l~  345 (365)
T 1jof_A          333 WLEIYRWKDEFLH  345 (365)
T ss_dssp             EEEEEEEETTEEE
T ss_pred             eEEEEEEchhhCc
Confidence             899998766543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.93  E-value=4.9e-25  Score=193.30  Aligned_cols=255  Identities=9%  Similarity=0.082  Sum_probs=175.3

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeeccccc---ceeEEEEccCCCeEEEEecC------CCCCceEEEEc
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKY---GVDLVCFTSHPTTVIYSSKN------GWDESLRLLSL   89 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~~------~~d~~i~vwd~   89 (304)
                      ..+.++++|++++++ .|+.|++||+.+++....+..+..   .+.+++|||||++|++++..      +.++.|++||+
T Consensus        19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            357899999766655 689999999999998877776654   48999999999999988741      01589999999


Q ss_pred             cCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEe
Q 036585           90 HDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSV  169 (304)
Q Consensus        90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (304)
                      .+++.+.... ....+..++|+|||+.|+.+. ++.|++||+.+++............                  ++  
T Consensus        98 ~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~------------------v~--  155 (719)
T 1z68_A           98 SNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENK------------------IF--  155 (719)
T ss_dssp             TTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTT------------------EE--
T ss_pred             CCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCC------------------eE--
Confidence            9987631111 135688899999999999885 7899999998876543221100000                  00  


Q ss_pred             cCCC---------CCceEEEEecCCcEEEEeeCCC----------------------------------eEEEEEcCCCc
Q 036585          170 GGDI---------SDANVVKFSNDGRLMLLTTMEG----------------------------------HIHVLDSFRGT  206 (304)
Q Consensus       170 ~~~~---------~~v~~~~~~~~~~~l~~~~~dg----------------------------------~i~~~d~~~~~  206 (304)
                      .++.         .....++|||||++|++++.|.                                  .|++||+.+++
T Consensus       156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~  235 (719)
T 1z68_A          156 NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA  235 (719)
T ss_dssp             ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred             cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence            0111         1235799999999998877542                                  78899998876


Q ss_pred             eeEEEEeC-----CCCCCcceEEEEcCCCcEEEEecCC----CcEEEEe----cCCCceeeee----eccCCCCc-----
Q 036585          207 LLSTYNVK-----PVSRNSTLEASFSPEGMFVISGSGD----GSVHAWS----VRSGKEVASW----MSFDTEPP-----  264 (304)
Q Consensus       207 ~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~v~d----~~~~~~~~~~----~~~~~~i~-----  264 (304)
                      ....+...     ..+...+..++||||++++++....    ..|.+||    +.+++....+    ..|...+.     
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  315 (719)
T 1z68_A          236 YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVS  315 (719)
T ss_dssp             HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCC
T ss_pred             ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCC
Confidence            53111111     1366778999999998877774322    2488999    8777766555    46777777     


Q ss_pred             eEEeCCCCcEEEE--ecCc----eEEeccCCccccccc
Q 036585          265 VIKWAPGSLMFVT--GSSE----LSFWIPDLSKLGAYV  296 (304)
Q Consensus       265 ~~~~~~~~~~l~s--~~~d----~~iw~~~~~~~~~~~  296 (304)
                      .+.|+|||+.++.  ...+    +.+|+.+..+...+.
T Consensus       316 ~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt  353 (719)
T 1z68_A          316 TPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQIT  353 (719)
T ss_dssp             CCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECS
T ss_pred             ccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecc
Confidence            8999999986554  3333    444555444444443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=4.9e-23  Score=165.09  Aligned_cols=229  Identities=11%  Similarity=-0.006  Sum_probs=170.8

Q ss_pred             eeeEeecccCcEEE-EeeCCCeEEEEecCCcceeeeeccc------ccceeEEEEccCCCeEEEEecCCCC---------
Q 036585           18 EEILQSMEVGIYLV-TASDDESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIYSSKNGWD---------   81 (304)
Q Consensus        18 ~~~i~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~~~d---------   81 (304)
                      ...+.++++|++++ +...++.|.+||+.+++.+..+..+      ...+..++|+|++++++++..   +         
T Consensus        45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~~~~~~~~~~  121 (349)
T 1jmx_B           45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN---PTQRLNDHYV  121 (349)
T ss_dssp             SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE---EEEECSSCEE
T ss_pred             CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcc---cccccccccc
Confidence            45688999998655 5557899999999999887776633      234789999999999999985   5         


Q ss_pred             ---CceEEEEccCceee---eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec-----------
Q 036585           82 ---ESLRLLSLHDNKYS---RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG-----------  144 (304)
Q Consensus        82 ---~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------  144 (304)
                         +.|.+||+.+++..   ..+. +...+.+++|+|+++ +++++.  .|++||+.+++....+....           
T Consensus       122 ~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  197 (349)
T 1jmx_B          122 VKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDV  197 (349)
T ss_dssp             ECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBC
T ss_pred             cCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccc
Confidence               89999999985433   3333 344688899999999 555543  49999999887665543221           


Q ss_pred             ---------------cceeEecCCC-----------e--EEEecCCCeEEEEecCCCCCceEEEEec-CCcEEEEeeCCC
Q 036585          145 ---------------RPAAAYDDQG-----------L--VFGYEKGPLDIFSVGGDISDANVVKFSN-DGRLMLLTTMEG  195 (304)
Q Consensus       145 ---------------~~~~~~~~~~-----------~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg  195 (304)
                                     ...+.+.+++           .  .+....+.+..+.+......+..++|+| ++++++++  ++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~  275 (349)
T 1jmx_B          198 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN  275 (349)
T ss_dssp             CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES
T ss_pred             eeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC
Confidence                           0011122111           0  1233456667777766677888999999 99999888  88


Q ss_pred             eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeecc
Q 036585          196 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF  259 (304)
Q Consensus       196 ~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  259 (304)
                      .|.+||+.+++....+.    ....+..++|+|++++|++++.++.|++||+++++.+..+...
T Consensus       276 ~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          276 RLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEEEETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             eEEEEECccCeEEEEEc----CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            99999999999888876    3345778999999999988888999999999999988877644

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.92  E-value=1.2e-23  Score=184.86  Aligned_cols=269  Identities=7%  Similarity=0.042  Sum_probs=179.3

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccc-----eeEEEEccCCCeEEEEecCCCC---------C
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYG-----VDLVCFTSHPTTVIYSSKNGWD---------E   82 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~~~~d---------~   82 (304)
                      +...+.|+++|++++++  |+.|++||+.+++....+.+|...     ...++||||+++|++++.   +         +
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~---~~~~~r~~~~~   92 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN---YVKQWRHSYTA   92 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEE---EEECSSSCEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEEC---CeeeEEEccce
Confidence            44568999999999986  899999999999988777777532     234789999999999886   4         6


Q ss_pred             ceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec------------------
Q 036585           83 SLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG------------------  144 (304)
Q Consensus        83 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------  144 (304)
                      .+.+||+.+++.. .+..|...+...+|||||+.|+.+ .++.|++||+.++..........                  
T Consensus        93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            6779999998855 466677889999999999999887 46899999998776443211000                  


Q ss_pred             --cceeEecCCCeEEEe---cCCCeEEEEecC------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC---Cce--e
Q 036585          145 --RPAAAYDDQGLVFGY---EKGPLDIFSVGG------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR---GTL--L  208 (304)
Q Consensus       145 --~~~~~~~~~~~~~~~---~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---~~~--~  208 (304)
                        ...+.|+|++..+.+   +...+.+|.+..      +...+..+.+.+.|..    ....+|++||+.+   ++.  .
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~  246 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATS  246 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCE
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceE
Confidence              012446666643322   233344443321      1223344444444421    1122688999988   742  2


Q ss_pred             EEEEeCC---CCCCcceEEEEcCCCcEEEEec----CCCcEEEEecCCCc----e--eeee--eccCCCCc-----eEEe
Q 036585          209 STYNVKP---VSRNSTLEASFSPEGMFVISGS----GDGSVHAWSVRSGK----E--VASW--MSFDTEPP-----VIKW  268 (304)
Q Consensus       209 ~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~----~dg~i~v~d~~~~~----~--~~~~--~~~~~~i~-----~~~~  268 (304)
                      ..+....   .+...+..++|+|||+.++...    .+..|++||+.+++    +  +..+  ..|...+.     .+.|
T Consensus       247 ~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f  326 (740)
T 4a5s_A          247 IQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF  326 (740)
T ss_dssp             EEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred             EEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence            2232100   2667789999999999766543    33479999999887    2  2222  45666655     7899


Q ss_pred             CCCCcEEE-EecCc-----eEEeccCCccccccc
Q 036585          269 APGSLMFV-TGSSE-----LSFWIPDLSKLGAYV  296 (304)
Q Consensus       269 ~~~~~~l~-s~~~d-----~~iw~~~~~~~~~~~  296 (304)
                      +|||+.++ ..+.+     +.+|+.+......+.
T Consensus       327 spDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT  360 (740)
T 4a5s_A          327 TLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT  360 (740)
T ss_dssp             CTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred             cCCCCEEEEEEEcCCCceEEEEEECCCCceEecc
Confidence            99999877 56533     666777666555443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=1.3e-23  Score=190.92  Aligned_cols=237  Identities=11%  Similarity=0.031  Sum_probs=184.3

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCC-cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTA-ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      .+.++++ .++++++.|+.++||.+.. +.....+..|. .+...+|+|+++.++++.    ++.|++|++...+ +..+
T Consensus       208 ~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~----~~~i~~~d~~~~~-l~~l  280 (1045)
T 1k32_A          208 SPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK----GGSIYIFNPDTEK-IEKI  280 (1045)
T ss_dssp             EEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE----TTEEEEECTTTCC-EEEC
T ss_pred             ceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe----CCEEEEecCCceE-eeee
Confidence            3455566 6777888889999998753 44455566555 467789999999999985    8999999995443 3344


Q ss_pred             cc-----------ccccEEEEEEc-CCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585           99 KG-----------HHDRVVLLSLC-SSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI  166 (304)
Q Consensus        99 ~~-----------~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (304)
                      ..           |...+.+++|+ |+|+++++++ ++.+++|++..+.....                           
T Consensus       281 ~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~---------------------------  332 (1045)
T 1k32_A          281 EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV---------------------------  332 (1045)
T ss_dssp             CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC---------------------------
T ss_pred             ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEc---------------------------
Confidence            43           34578999999 9999888887 78999999887653321                           


Q ss_pred             EEecCCCC-CceEEEEecCCcEEEEeeCCCeEE-EEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEE
Q 036585          167 FSVGGDIS-DANVVKFSNDGRLMLLTTMEGHIH-VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHA  244 (304)
Q Consensus       167 ~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v  244 (304)
                         ..+.. .+..++|+ +|+.++.++.++.+. +||+.+++... +.   .+...+..++|+|||++|++++.++.|++
T Consensus       333 ---~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~---~~~~~~~~~~~SpDG~~la~~~~~~~v~~  404 (1045)
T 1k32_A          333 ---PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FE---ENLGNVFAMGVDRNGKFAVVANDRFEIMT  404 (1045)
T ss_dssp             ---SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CC---CCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ---cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ec---CCccceeeeEECCCCCEEEEECCCCeEEE
Confidence               12334 67889999 999999998888899 99988766432 22   46678899999999999999999999999


Q ss_pred             EecCCCceeeeeeccCCCCceEEeCCCCcEEEEecC------------ceEEeccCCccccccccCC
Q 036585          245 WSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSS------------ELSFWIPDLSKLGAYVGRN  299 (304)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~------------d~~iw~~~~~~~~~~~~~~  299 (304)
                      ||+.+++....+.+|...+.+++|+|||++|++++.            .+++|+.+..++..+..+.
T Consensus       405 ~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~  471 (1045)
T 1k32_A          405 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN  471 (1045)
T ss_dssp             EETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSS
T ss_pred             EECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCC
Confidence            999999887777789999999999999999987754            2888988776665555443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=6.8e-22  Score=157.42  Aligned_cols=248  Identities=10%  Similarity=0.074  Sum_probs=169.0

Q ss_pred             eEeecccCcEEEEeeC-CCeEEEEecCCcce-eeeecccccceeEEEEccCCCeEEEEecCCCC-C--ceEEEEccCcee
Q 036585           20 ILQSMEVGIYLVTASD-DESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD-E--SLRLLSLHDNKY   94 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~-d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d-~--~i~vwd~~~~~~   94 (304)
                      .+.++++|+++++++. ++.|.+||..+++. ...+..+..+..+++|+|+++++++...   + +  .|.+||+.+++.
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~v~d~~~~~~  120 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTG---LNHPFNMQSYSFLKNKF  120 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCC---SSSSCEEEEEETTTTEE
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecC---CCCcccEEEEECCCCCe
Confidence            7889999997776665 88999999999887 7777777666655999999999995443   3 3  899999999988


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEc-ccCCe-EEEEeCCcceeeceE-----EE-eccceeEecCCCe-EE-Ee-cCCC
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFISG-SLDRT-VLLWDQRAEKCQGLL-----RV-QGRPAAAYDDQGL-VF-GY-EKGP  163 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~~~~~-----~~-~~~~~~~~~~~~~-~~-~~-~~~~  163 (304)
                      +..+.. .....+++|+|++++++++ ..++. +.+|++.........     .. .....+.+++++. ++ .. .++.
T Consensus       121 ~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  199 (331)
T 3u4y_A          121 ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS  199 (331)
T ss_dssp             EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe
Confidence            877764 3456899999999855554 45577 999998754332111     10 1233567888885 33 22 3566


Q ss_pred             eEEEEecCCC-----------CCceEEEEecCCcEEEEee-CCCeEEEEEcCCCce--eEEEEeC----CCCCCcceEEE
Q 036585          164 LDIFSVGGDI-----------SDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTL--LSTYNVK----PVSRNSTLEAS  225 (304)
Q Consensus       164 ~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~--~~~~~~~----~~~~~~i~~~~  225 (304)
                      +.+|++....           ..+..++|+|+|+++++++ .++.|.+||+.+++.  +..+...    .........++
T Consensus       200 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (331)
T 3u4y_A          200 IGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMA  279 (331)
T ss_dssp             EEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEE
T ss_pred             EEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceE
Confidence            7778765322           3457799999999776654 577899999998877  3333321    11111224589


Q ss_pred             EcCCCcEEEEec-CCCcEEEEecCCCceeeeeeccCCCCceEEeCCCC
Q 036585          226 FSPEGMFVISGS-GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS  272 (304)
Q Consensus       226 ~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  272 (304)
                      |+||+++|++++ .++.|.+||+.+.. +..+......-....++|+.
T Consensus       280 ~spdg~~l~v~~~~~~~v~v~d~~~~~-~~~~~~~~~~g~~~~~~~~~  326 (331)
T 3u4y_A          280 LNKTETKLFISANISRELKVFTISGKV-VGYVAGIEANGGIAICHPDK  326 (331)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTSCE-EEECTTCCCBSCEEECCCC-
T ss_pred             ECCCCCEEEEecCCCCcEEEEEecCCc-ccceecccccCCeEEECCcc
Confidence            999999886554 56799999997644 33333333332334455554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.92  E-value=4.1e-23  Score=168.13  Aligned_cols=266  Identities=11%  Similarity=0.087  Sum_probs=183.1

Q ss_pred             EeecccCcEEEEeeC-CC--eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           21 LQSMEVGIYLVTASD-DE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        21 i~~~~~~~~l~~~~~-d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ..++|||++|+.++. ++  .|.+||+.+++......++...+..+.|+|+++.|+++..   ++.|++||+.+++....
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~---~~~l~~~d~~~g~~~~~  117 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD---GRNLMRVDLATLEENVV  117 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET---TTEEEEEETTTCCEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC---CCeEEEEECCCCcceee
Confidence            568999999998887 66  4888899988887777777666667889999999999997   88999999999887666


Q ss_pred             cccccccEEEEE--EcCCCCEEEE----------------------cccCCeEEEEeCCcceeeceEEEec-cceeEecC
Q 036585           98 FKGHHDRVVLLS--LCSSKDCFIS----------------------GSLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYDD  152 (304)
Q Consensus        98 ~~~~~~~v~~~~--~~~~~~~l~~----------------------~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~  152 (304)
                      +..+...+....  ++|++++++.                      ...+..|.+||+.+++......... .....++|
T Consensus       118 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp  197 (388)
T 3pe7_A          118 YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRP  197 (388)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred             eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECC
Confidence            665555554444  4899988873                      2345789999999887655443332 23567888


Q ss_pred             -CCeEEE--ecC------CCeEEEEecC--------CC--CCceEEEEecCCcEEEEeeC-CC----eEEEEEcCCCcee
Q 036585          153 -QGLVFG--YEK------GPLDIFSVGG--------DI--SDANVVKFSNDGRLMLLTTM-EG----HIHVLDSFRGTLL  208 (304)
Q Consensus       153 -~~~~~~--~~~------~~~~~~~~~~--------~~--~~v~~~~~~~~~~~l~~~~~-dg----~i~~~d~~~~~~~  208 (304)
                       ++..+.  ...      ..+.+++..+        +.  ..+..++|+|||+.|+..+. ++    .|++||+.+++..
T Consensus       198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~  277 (388)
T 3pe7_A          198 YDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR  277 (388)
T ss_dssp             TEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred             CCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE
Confidence             775432  221      2444444332        11  13667899999997765443 22    4999999988754


Q ss_pred             EEEEeCCCCC---CcceEEEEcCCCcEEEEe---------cCCCcEEEEecCCCceeeeeeccCC-----------CCce
Q 036585          209 STYNVKPVSR---NSTLEASFSPEGMFVISG---------SGDGSVHAWSVRSGKEVASWMSFDT-----------EPPV  265 (304)
Q Consensus       209 ~~~~~~~~~~---~~i~~~~~s~~~~~l~~~---------~~dg~i~v~d~~~~~~~~~~~~~~~-----------~i~~  265 (304)
                      ...... ...   .....++|+|||+.|+..         ..+..|++||+.+++. ..+..+..           .+..
T Consensus       278 ~l~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~  355 (388)
T 3pe7_A          278 QLTSMP-ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPH  355 (388)
T ss_dssp             EEEEEC-CEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCC
T ss_pred             EEEcCC-CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCC
Confidence            433311 100   001223799999988754         4466899999988764 45555655           5788


Q ss_pred             EEeCCCCcEEEEecCc---eEEeccCCcc
Q 036585          266 IKWAPGSLMFVTGSSE---LSFWIPDLSK  291 (304)
Q Consensus       266 ~~~~~~~~~l~s~~~d---~~iw~~~~~~  291 (304)
                      ++|+|||+.|+.++..   ..||.++...
T Consensus       356 ~~~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          356 PSFTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             CEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             ccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence            9999999988877654   7788776543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.91  E-value=6e-22  Score=159.30  Aligned_cols=241  Identities=10%  Similarity=0.101  Sum_probs=172.8

Q ss_pred             ccCcEEEEee------CCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEec-------CCCCCceEEEEccC
Q 036585           25 EVGIYLVTAS------DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-------NGWDESLRLLSLHD   91 (304)
Q Consensus        25 ~~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------~~~d~~i~vwd~~~   91 (304)
                      ++++++++..      .|+.|.+||..+++.+.++..+..+  .++|+|++++++++..       +..++.|.+||..+
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            4667766654      3679999999999998888776655  8999999999999862       01167899999998


Q ss_pred             ceeeeecccc------cccEEEEEEcCCCCEEEEccc--CCeEEEEeCCcceeece-EEEecc-----------ceeEec
Q 036585           92 NKYSRYFKGH------HDRVVLLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGL-LRVQGR-----------PAAAYD  151 (304)
Q Consensus        92 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~-----------~~~~~~  151 (304)
                      .+.+..+...      ......++++|+|++|+++..  ++.|.+||+++++.... +.....           ..+...
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC  170 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred             CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence            8877766532      234567899999999998864  57999999998876654 221110           112222


Q ss_pred             CCCeEE----------------------------------------EecCCCeEEEEecCCC------------------
Q 036585          152 DQGLVF----------------------------------------GYEKGPLDIFSVGGDI------------------  173 (304)
Q Consensus       152 ~~~~~~----------------------------------------~~~~~~~~~~~~~~~~------------------  173 (304)
                      +++.+.                                        ....+.+.++++....                  
T Consensus       171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~  250 (361)
T 2oiz_A          171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN  250 (361)
T ss_dssp             TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred             CCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence            222111                                        1111223333332111                  


Q ss_pred             ---CCceEEEEecCCcEEEEeeC-----------CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585          174 ---SDANVVKFSNDGRLMLLTTM-----------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD  239 (304)
Q Consensus       174 ---~~v~~~~~~~~~~~l~~~~~-----------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  239 (304)
                         .....++|+|+++.++++..           .+.|.+||+.+++.+.++..   +.  ...++|+|||++|++++. 
T Consensus       251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~---~~--p~~ia~spdg~~l~v~n~-  324 (361)
T 2oiz_A          251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG---RD--ALSMTIDQQRNLMLTLDG-  324 (361)
T ss_dssp             CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC---TT--CCEEEEETTTTEEEEECS-
T ss_pred             cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec---CC--eeEEEECCCCCEEEEeCC-
Confidence               11123789999888777643           34899999999999999883   33  889999999999999887 


Q ss_pred             CcEEEEecCCC--ceeeeeeccCCCCceEEeCCCCc
Q 036585          240 GSVHAWSVRSG--KEVASWMSFDTEPPVIKWAPGSL  273 (304)
Q Consensus       240 g~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~  273 (304)
                      +.|.+||+.++  +.+..+..+......++++|+|+
T Consensus       325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            99999999999  88888766777889999999985

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=1.4e-21  Score=156.68  Aligned_cols=235  Identities=11%  Similarity=0.105  Sum_probs=153.4

Q ss_pred             CCCeEEEEecC--Ccceee-eecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce--eeeecccccccEEEEE
Q 036585           35 DDESIRLYDVT--AATCLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YSRYFKGHHDRVVLLS  109 (304)
Q Consensus        35 ~d~~i~vw~~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~  109 (304)
                      .++.|.+|+++  +++... ....+...+..++|+|+++ |++++..+.++.|++|++.+++  .+..+..+...+..++
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence            34567777665  454432 2334556788899999999 6666541125899999998765  3444445677888999


Q ss_pred             EcCCCCEEEEcc-cCCeEEEEeCCcceeeceEE-EeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcE
Q 036585          110 LCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLR-VQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRL  187 (304)
Q Consensus       110 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  187 (304)
                      |+|++++|++++ .++.+.+|++........+. ......   .+.               .......+.+++|+|+|++
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~---~p~---------------~~~~~~~~~~~~~spdg~l  154 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH---GPR---------------PEQDGSHIHYTDLTPDNRL  154 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC---CSS---------------TTCSSCCEEEEEECTTSCE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC---CCC---------------ccccCCCceEEEECCCCcE
Confidence            999999888877 78999999996322221111 100000   000               0012235778999999996


Q ss_pred             EEEeeCCCeEEEEEcC-CCceeEEEEeCCCCCCcceEEEEcCCCcEEEE-ecCCCcEEEEecCC--Cce--eeeeeccC-
Q 036585          188 MLLTTMEGHIHVLDSF-RGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS-GSGDGSVHAWSVRS--GKE--VASWMSFD-  260 (304)
Q Consensus       188 l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~v~d~~~--~~~--~~~~~~~~-  260 (304)
                      +++...++.|++|++. +++.................++|+|||+++++ ...++.|.+|++..  ++.  +..+.... 
T Consensus       155 ~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~  234 (347)
T 3hfq_A          155 AVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA  234 (347)
T ss_dssp             EEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT
T ss_pred             EEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC
Confidence            6666678899999998 55543322211123346678999999997665 56788999999874  443  22332222 


Q ss_pred             -----CCCceEEeCCCCcEEEEec-Cc--eEEeccC
Q 036585          261 -----TEPPVIKWAPGSLMFVTGS-SE--LSFWIPD  288 (304)
Q Consensus       261 -----~~i~~~~~~~~~~~l~s~~-~d--~~iw~~~  288 (304)
                           ..+..++|+|||++|+++. .+  +.+|+++
T Consensus       235 ~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          235 DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             TCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             CCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence                 3477899999999875443 33  9999986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=4.8e-22  Score=155.45  Aligned_cols=207  Identities=12%  Similarity=0.117  Sum_probs=155.2

Q ss_pred             CCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCc-ceeeceEEEe---ccceeEecCCCe
Q 036585           80 WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLLRVQ---GRPAAAYDDQGL  155 (304)
Q Consensus        80 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~---~~~~~~~~~~~~  155 (304)
                      .|+.|++||+.+++... +..|...+.+++|+|++++|++++ ++.|++||+.+ ++........   ....+.+++++.
T Consensus        20 ~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~   97 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA   97 (297)
T ss_dssp             CCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS
T ss_pred             cceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCC
Confidence            49999999999988664 445888999999999999999876 78999999998 6655444322   223477888885


Q ss_pred             EEEecC----CCeEEEEecC---------CCCCceEEEEecCCcEEE-EeeCCCeEEEEEcC--CCceeEEEEeCCCCCC
Q 036585          156 VFGYEK----GPLDIFSVGG---------DISDANVVKFSNDGRLML-LTTMEGHIHVLDSF--RGTLLSTYNVKPVSRN  219 (304)
Q Consensus       156 ~~~~~~----~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~--~~~~~~~~~~~~~~~~  219 (304)
                      .+....    +...+|.+..         ....+..++|+|++++|+ ++..++.+++|++.  +++. ..+.   .+..
T Consensus        98 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~  173 (297)
T 2ojh_A           98 LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLT---HGEG  173 (297)
T ss_dssp             EEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECC---CSSS
T ss_pred             EEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcc---cCCC
Confidence            543322    4566666532         223477889999999887 67789999999864  3333 2222   4667


Q ss_pred             cceEEEEcCCCcEEEEec-CCCcEEEEecC-CCceeeeeeccCCCCceEEeCCCCcEEEEecCc-------------eEE
Q 036585          220 STLEASFSPEGMFVISGS-GDGSVHAWSVR-SGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-------------LSF  284 (304)
Q Consensus       220 ~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-------------~~i  284 (304)
                      .+.+++|+|++++|+.++ .++.+++|++. .+..+..+..|...+..++|+|++++|++++.+             +.+
T Consensus       174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~  253 (297)
T 2ojh_A          174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQL  253 (297)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred             ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEE
Confidence            899999999999887665 58899999986 566677777788889999999999998887753             777


Q ss_pred             eccCCccc
Q 036585          285 WIPDLSKL  292 (304)
Q Consensus       285 w~~~~~~~  292 (304)
                      |+.+..+.
T Consensus       254 ~d~~~~~~  261 (297)
T 2ojh_A          254 MDMDGGNV  261 (297)
T ss_dssp             EETTSCSC
T ss_pred             EecCCCCc
Confidence            77766544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=2.5e-22  Score=171.93  Aligned_cols=223  Identities=8%  Similarity=0.039  Sum_probs=162.1

Q ss_pred             eeEeecccCcEEEEeeC---CCeEEEEecCC---cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc
Q 036585           19 EILQSMEVGIYLVTASD---DESIRLYDVTA---ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   92 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~---d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~   92 (304)
                      ..+.|+|+ +++++++.   +...++|.+..   +... .+.... .+...+|+|+++.++..+..  ++.+.+||+.++
T Consensus        68 ~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~--~~~~~l~d~~~g  142 (582)
T 3o4h_A           68 LDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGAT--EDRVALYALDGG  142 (582)
T ss_dssp             CEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEEC--SSCEEEEEEETT
T ss_pred             ccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecC--CCCceEEEccCC
Confidence            34678888 77777765   45566665533   2222 333222 34467899998764444322  556669999998


Q ss_pred             eeeeecccccccEEEEEEcCCCCEEEEcccC----CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585           93 KYSRYFKGHHDRVVLLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS  168 (304)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
                      +...... +..  .+++|+|||+++++++.+    +.|++||+.+++....                             
T Consensus       143 ~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l-----------------------------  190 (582)
T 3o4h_A          143 GLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF-----------------------------  190 (582)
T ss_dssp             EEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE-----------------------------
T ss_pred             cEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe-----------------------------
Confidence            7655544 333  789999999999988777    7899999988765421                             


Q ss_pred             ecCCCCCceEEEEecCCcEEEEeeCCC--eEEEEEcCCCceeEEEEeCCCCCCcceEEE--------EcCCCcEEEEecC
Q 036585          169 VGGDISDANVVKFSNDGRLMLLTTMEG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEAS--------FSPEGMFVISGSG  238 (304)
Q Consensus       169 ~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~--------~s~~~~~l~~~~~  238 (304)
                       ..+...+..++|+|||+.|+++..++  .|++||+.+++.. .+.   .+...+..++        |+|||.++++++.
T Consensus       191 -~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  265 (582)
T 3o4h_A          191 -DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE---LPSKDFSSYRPTAITWLGYLPDGRLAVVARR  265 (582)
T ss_dssp             -CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC---CSCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred             -ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc---CCCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence             13556678899999999999888888  8999999988876 433   4566666667        9999988999999


Q ss_pred             CCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc---eEEeccCC
Q 036585          239 DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPDL  289 (304)
Q Consensus       239 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~  289 (304)
                      |+.+++|++  ++...   .+.+.+.+++|+ +++++++++.+   ..+|.++.
T Consensus       266 ~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          266 EGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             TTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             CCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence            999999999  65544   234678899999 99999888776   55665554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.89  E-value=1.9e-20  Score=148.88  Aligned_cols=249  Identities=10%  Similarity=0.080  Sum_probs=179.7

Q ss_pred             ceeeEeecccCcEEEEeeCC------------------------CeEEEEecCCcceeeeec-ccccceeEEEEccCCCe
Q 036585           17 SEEILQSMEVGIYLVTASDD------------------------ESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTT   71 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d------------------------~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~   71 (304)
                      ....+.+.++|+++++...+                        +.|.+||..+++.+..+. .+...+..++++|+++.
T Consensus        25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l  104 (329)
T 3fvz_A           25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNY  104 (329)
T ss_dssp             CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCE
T ss_pred             CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCE
Confidence            45568899999999888877                        479999998888876654 34457889999999997


Q ss_pred             EEEEecCCCCCceEEEEccCce-eeeec---------ccccccEEEEEEcC-CCCEEEEcc-cCCeEEEEeCCcceeece
Q 036585           72 VIYSSKNGWDESLRLLSLHDNK-YSRYF---------KGHHDRVVLLSLCS-SKDCFISGS-LDRTVLLWDQRAEKCQGL  139 (304)
Q Consensus        72 l~~~~~~~~d~~i~vwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~  139 (304)
                      +++...   ++.|++||..... .+..+         ..+......++++| ++.++++.+ .++.|++||. ++.....
T Consensus       105 ~v~d~~---~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~  180 (329)
T 3fvz_A          105 WVTDVA---LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQ  180 (329)
T ss_dssp             EEEETT---TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEE
T ss_pred             EEEECC---CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEE
Confidence            777666   8999999986542 34444         23445689999999 788888876 6899999994 4544443


Q ss_pred             EEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCC
Q 036585          140 LRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSR  218 (304)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  218 (304)
                      +...+....                   ...++......++++|+ +.++++...++.|++||..+++.+..+... ...
T Consensus       181 ~~~~g~~~~-------------------~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~  240 (329)
T 3fvz_A          181 WGEESSGSS-------------------PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFG  240 (329)
T ss_dssp             ECEECCSSS-------------------CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTT
T ss_pred             eccCCCCCC-------------------CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccC
Confidence            322111000                   00011234678999998 777777778899999999889888877533 355


Q ss_pred             CcceEEEEcC------CCcEEEEecCCCcEEEEecCCCceeeee---eccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585          219 NSTLEASFSP------EGMFVISGSGDGSVHAWSVRSGKEVASW---MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       219 ~~i~~~~~s~------~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~  287 (304)
                      ..+..++|+|      +++..++...+..|++||+.+++.+..+   ..+...+..|+++|+|.++++...+  |++|+.
T Consensus       241 ~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          241 RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            6788899999      3333333344568999999999988877   3566778999999999777777666  777766


Q ss_pred             CC
Q 036585          288 DL  289 (304)
Q Consensus       288 ~~  289 (304)
                      +.
T Consensus       321 ~~  322 (329)
T 3fvz_A          321 TE  322 (329)
T ss_dssp             EE
T ss_pred             Cc
Confidence            54

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.89  E-value=8.3e-20  Score=143.10  Aligned_cols=235  Identities=13%  Similarity=0.079  Sum_probs=169.6

Q ss_pred             eeeEeecccCc-EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           18 EEILQSMEVGI-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        18 ~~~i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      .+.+.+.++|+ +++++..++.|..|+..++  ...+..+...+.+++++++++.+++...   ++.|.+||..+++...
T Consensus        30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~---~~~i~~~d~~~g~~~~  104 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHG---LRRLERQREPGGEWES  104 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETT---TTEEEEECSTTCCEEE
T ss_pred             ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecC---CCeEEEEcCCCCcEEE
Confidence            45688899998 7888888999999999876  5666667778999999999997776655   7899999998876543


Q ss_pred             ecccc----cccEEEEEEcCCCCEEEE----ccc-------------CCeEEEEeCCcceeeceEEEeccceeEecCCCe
Q 036585           97 YFKGH----HDRVVLLSLCSSKDCFIS----GSL-------------DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL  155 (304)
Q Consensus        97 ~~~~~----~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  155 (304)
                      .....    ...+..++++|+|+++++    ++.             .+.|..++.. ++.. .+.              
T Consensus       105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~--------------  168 (296)
T 3e5z_A          105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-API--------------  168 (296)
T ss_dssp             EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEE--------------
T ss_pred             EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Eee--------------
Confidence            33221    124567999999998887    431             2355555544 2221 111              


Q ss_pred             EEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC-CCce---eEEEEeCCCCCCcceEEEEcCCCc
Q 036585          156 VFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-RGTL---LSTYNVKPVSRNSTLEASFSPEGM  231 (304)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~---~~~~~~~~~~~~~i~~~~~s~~~~  231 (304)
                                     .+......++|+|+++.+++.+.++.|++||+. +++.   ...+   ......+..++++++|+
T Consensus       169 ---------------~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          169 ---------------RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             ---------------CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCSSSCCCSEEEBTTSC
T ss_pred             ---------------cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCCCCCCCeEEECCCCC
Confidence                           233456789999999988777778999999987 5554   2223   23455667899999998


Q ss_pred             EEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEe-CCCCcEEEEecCc-eEEeccCCcccccc
Q 036585          232 FVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKW-APGSLMFVTGSSE-LSFWIPDLSKLGAY  295 (304)
Q Consensus       232 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~~~d-~~iw~~~~~~~~~~  295 (304)
                      ++++.  ++.|.+||.. ++.+..+..+.. +++++| +|+++.|++++.+ +.-++++..+++..
T Consensus       231 l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~~~  292 (296)
T 3e5z_A          231 IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLEHH  292 (296)
T ss_dssp             EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBCCC-
T ss_pred             EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEccccccccc
Confidence            76666  7889999985 778888877777 999999 6899888888777 44445555555543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=3.8e-22  Score=174.97  Aligned_cols=242  Identities=10%  Similarity=0.085  Sum_probs=162.1

Q ss_pred             eeeEeecccCcEEEEeeC---------CCeEEEEecCCccee--eeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           18 EEILQSMEVGIYLVTASD---------DESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~---------d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      ...+.++|||++|++++.         ++.|++||+.+++.+  ..+   ...+..++|||||+.|+++.    ++.|++
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~----~~~i~~  134 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY----QNNIYL  134 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE----TTEEEE
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE----CCeEEE
Confidence            456889999999999876         789999999988763  223   24688999999999999986    889999


Q ss_pred             EEccCceeeeec-ccccccE-----------------EEEEEcCCCCEEEEcccCC------------------------
Q 036585           87 LSLHDNKYSRYF-KGHHDRV-----------------VLLSLCSSKDCFISGSLDR------------------------  124 (304)
Q Consensus        87 wd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~l~~~~~dg------------------------  124 (304)
                      |++.+++..+.. .++...|                 .+++|+|||++|++++.|.                        
T Consensus       135 ~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y  214 (719)
T 1z68_A          135 KQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY  214 (719)
T ss_dssp             ESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred             EeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence            999888765433 2333223                 4899999999999987652                        


Q ss_pred             ----------eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC
Q 036585          125 ----------TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME  194 (304)
Q Consensus       125 ----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  194 (304)
                                .|++||+.+++....+.....                     ..+.++...+..++|+||++++++....
T Consensus       215 p~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~SpD~~~~~~~~~~  273 (719)
T 1z68_A          215 PKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP---------------------AMIASSDYYFSWLTWVTDERVCLQWLKR  273 (719)
T ss_dssp             CBTTSCCCEEEEEEEESSCHHHHCCEECCCC---------------------HHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred             CCCCCCCCeeEEEEEECCCCCccceeEccCC---------------------ccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence                      455566555443100110000                     0011355567899999998877764432


Q ss_pred             ----CeEEEEE----cCCCceeEEEE-eCCCCCCcce-----EEEEcCCCcEEEE--ecCCC--cEEEEecCCCceeeee
Q 036585          195 ----GHIHVLD----SFRGTLLSTYN-VKPVSRNSTL-----EASFSPEGMFVIS--GSGDG--SVHAWSVRSGKEVASW  256 (304)
Q Consensus       195 ----g~i~~~d----~~~~~~~~~~~-~~~~~~~~i~-----~~~~s~~~~~l~~--~~~dg--~i~v~d~~~~~~~~~~  256 (304)
                          ..|.+||    +.+++....+. ....+...+.     .+.|+|||+.|+.  ...+|  .|++||+.+++ ...+
T Consensus       274 ~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~l  352 (719)
T 1z68_A          274 VQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQI  352 (719)
T ss_dssp             STTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEEC
T ss_pred             ccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEec
Confidence                3588999    77776554441 0013455555     7899999996554  44555  57778877666 4555


Q ss_pred             eccCCCCceEEeCCCCcEEEE-ecC----c--eEEeccCC
Q 036585          257 MSFDTEPPVIKWAPGSLMFVT-GSS----E--LSFWIPDL  289 (304)
Q Consensus       257 ~~~~~~i~~~~~~~~~~~l~s-~~~----d--~~iw~~~~  289 (304)
                      ..+...+..+.++ +++.++. +..    +  .++|.++.
T Consensus       353 t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          353 TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            5566667777777 6665554 443    2  88998765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=8.2e-20  Score=147.21  Aligned_cols=214  Identities=12%  Similarity=0.134  Sum_probs=145.8

Q ss_pred             cCcEEEEee-CCCeEEEEecCCcceeeeec------c--------cccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585           26 VGIYLVTAS-DDESIRLYDVTAATCLKTIN------S--------KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   90 (304)
Q Consensus        26 ~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~------~--------~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~   90 (304)
                      ++++|++++ .++.|.+|++.+...+..+.      +        +...+.+++|+|++++++++...  ++.|.+|++.
T Consensus       108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~v~v~~~~  185 (361)
T 3scy_A          108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG--TDQIHKFNIN  185 (361)
T ss_dssp             CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT--TTEEEEEEEC
T ss_pred             CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC--CCEEEEEEEc
Confidence            788777776 57899999997543332221      1        12235789999999988777653  8899999987


Q ss_pred             Ccee------e-------eecccccccEEEEEEcCCCCEEEEcc-cCCeEEEEeCCcceeeceEEEeccceeEecCCCeE
Q 036585           91 DNKY------S-------RYFKGHHDRVVLLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV  156 (304)
Q Consensus        91 ~~~~------~-------~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (304)
                      ....      +       .....+...+..++|+|+++++++++ .++.|.+||+.+++..........           
T Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~-----------  254 (361)
T 3scy_A          186 PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAAD-----------  254 (361)
T ss_dssp             TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESC-----------
T ss_pred             CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecC-----------
Confidence            5431      1       11122345678999999999877766 689999999986644322221110           


Q ss_pred             EEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC--CeEEEEEcC--CCce--eEEEEeCCCCCCcceEEEEcCCC
Q 036585          157 FGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME--GHIHVLDSF--RGTL--LSTYNVKPVSRNSTLEASFSPEG  230 (304)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~~d~~--~~~~--~~~~~~~~~~~~~i~~~~~s~~~  230 (304)
                                   ..+......++|+|+|++|+++..+  +.|.+|++.  +++.  +..+.   . ...+..++|+|||
T Consensus       255 -------------~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~---~-g~~~~~~~~spdg  317 (361)
T 3scy_A          255 -------------TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL---T-GIHPRNFIITPNG  317 (361)
T ss_dssp             -------------SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE---C-SSCCCEEEECTTS
T ss_pred             -------------CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec---C-CCCCceEEECCCC
Confidence                         1122345789999999998777654  899999985  4553  33333   2 4567889999999


Q ss_pred             cEEEEec-CCCcEEEE--ecCCCceeeee-eccCCCCceEEeC
Q 036585          231 MFVISGS-GDGSVHAW--SVRSGKEVASW-MSFDTEPPVIKWA  269 (304)
Q Consensus       231 ~~l~~~~-~dg~i~v~--d~~~~~~~~~~-~~~~~~i~~~~~~  269 (304)
                      ++|++++ .++.|.+|  |..+++..... ..+...+.|+.|.
T Consensus       318 ~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          318 KYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             CEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            9888887 67889996  44566654433 2345568888885

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.88  E-value=7.7e-20  Score=146.54  Aligned_cols=257  Identities=9%  Similarity=0.065  Sum_probs=175.9

Q ss_pred             cCcEEEEee---------CCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCC--CCCceEEEEccCcee
Q 036585           26 VGIYLVTAS---------DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNKY   94 (304)
Q Consensus        26 ~~~~l~~~~---------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd~~~~~~   94 (304)
                      +|++++...         .++.|.+||+.+++... +    ..+..++|+|+|+.|++.+..+  ....|.+|++.+++.
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~   97 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS   97 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce
Confidence            888887653         25679999998876533 3    4688899999999999887521  123488889888876


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEcccC---------------------------CeEEEEeCCcceeeceEEEeccce
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFISGSLD---------------------------RTVLLWDQRAEKCQGLLRVQGRPA  147 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~~  147 (304)
                      ..... +.. +..+.|+|+++.|+.++.+                           ..|++||+.+++....+.......
T Consensus        98 ~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~  175 (347)
T 2gop_A           98 KKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSS  175 (347)
T ss_dssp             EEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCE
T ss_pred             EEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCccc
Confidence            55544 334 9999999999988887642                           579999998887633333234456


Q ss_pred             eEecCCCeEEEecC-------C-CeEEEEecCCCCC-------ceEEEEecCCcEEEEeeCC--------CeEEEEEcCC
Q 036585          148 AAYDDQGLVFGYEK-------G-PLDIFSVGGDISD-------ANVVKFSNDGRLMLLTTME--------GHIHVLDSFR  204 (304)
Q Consensus       148 ~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~  204 (304)
                      +.+++++.++....       . ...+|.+.  .+.       .....++|+|+.|+.++.+        ..|.+||  +
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~  251 (347)
T 2gop_A          176 GIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--G  251 (347)
T ss_dssp             EEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEEESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--S
T ss_pred             ccCCCCeEEEEEecccccccccccccEEEeC--CCceEEeccCcceeeECCCCCEEEEEEccccCCccccceEEEEC--C
Confidence            77888883333321       1 33555543  111       1122349999988877644        4688888  5


Q ss_pred             CceeEEEEeCCCCCCcceE-EEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--
Q 036585          205 GTLLSTYNVKPVSRNSTLE-ASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--  281 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--  281 (304)
                      ++.....   ..+...+.. +.|+ |+ ++++++.++.+++| +.+++. ..+..+...|.+++|+|  .++++++.+  
T Consensus       252 ~~~~~l~---~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~  322 (347)
T 2gop_A          252 KEVMGIL---DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATR  322 (347)
T ss_dssp             SCEEESS---TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSS
T ss_pred             CceEecc---ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCC
Confidence            5433222   234567775 8999 88 88889999999999 876655 34444577899999999  566665555  


Q ss_pred             -eEEeccCCccccccccCCCCCC
Q 036585          282 -LSFWIPDLSKLGAYVGRNRGCM  303 (304)
Q Consensus       282 -~~iw~~~~~~~~~~~~~~~g~~  303 (304)
                       .+||.++ .+..++..++...+
T Consensus       323 ~~~l~~~~-g~~~~lt~~n~~~l  344 (347)
T 2gop_A          323 LRELFTWD-GEEKQLTDYNDPIF  344 (347)
T ss_dssp             CCEEEEES-SSEEECCCTTSTTT
T ss_pred             hHHheEeC-CcEEEeccccHhHH
Confidence             4899888 66777777777654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.88  E-value=5.4e-21  Score=155.90  Aligned_cols=260  Identities=10%  Similarity=0.026  Sum_probs=173.1

Q ss_pred             eEeecccCcEEEEeeCC---CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           20 ILQSMEVGIYLVTASDD---ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      .+.++|+|++|+.....   ..|.+||+.+++.......+......+.|+|+++.|++++.   ++.|++||+.+++...
T Consensus        40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~---~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN---ELNLMKVDLETLEEQV  116 (396)
T ss_dssp             SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET---TTEEEEEETTTCCEEE
T ss_pred             cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc---CCcEEEEECCCCCcEE
Confidence            46789999998877543   36888999887765444433333334789999999999987   7899999999887655


Q ss_pred             ecccccccEEE-------------------EEEcCCCCEEEEc-----ccCCeEEEEeCCcceeeceEEEec-cceeEec
Q 036585           97 YFKGHHDRVVL-------------------LSLCSSKDCFISG-----SLDRTVLLWDQRAEKCQGLLRVQG-RPAAAYD  151 (304)
Q Consensus        97 ~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~  151 (304)
                      ....+......                   +.|+|+++.++..     ..+..|++||+.+++......... .....++
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s  196 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR  196 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence            54433332222                   3467777766654     356789999998877655443222 2245677


Q ss_pred             C-CCe--EEEecC------CCeEEEEecCC----------CCCceEEEEecCCcEEEEeeCC-----CeEEEEEcCCCce
Q 036585          152 D-QGL--VFGYEK------GPLDIFSVGGD----------ISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTL  207 (304)
Q Consensus       152 ~-~~~--~~~~~~------~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~  207 (304)
                      + ++.  ++....      ..+.++++.+.          ...+..++|+|+|+.|+..+.+     +.|++||+.+++.
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred             CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence            7 553  222222      24555554321          1136668999999988776543     4599999988876


Q ss_pred             eEEEEeCCCCCCcceEEEEcC-CCcEEEEec----------------CCCcEEEEecCCCceeeeeeccCC---------
Q 036585          208 LSTYNVKPVSRNSTLEASFSP-EGMFVISGS----------------GDGSVHAWSVRSGKEVASWMSFDT---------  261 (304)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----------------~dg~i~v~d~~~~~~~~~~~~~~~---------  261 (304)
                      ......    .. .. +.|+| ||+++++++                .+..|++||+.+++. ..+..+..         
T Consensus       277 ~~l~~~----~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~  349 (396)
T 3c5m_A          277 EEVMVM----PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDR  349 (396)
T ss_dssp             EEEEEC----CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBS
T ss_pred             EEeeeC----CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccc
Confidence            544331    11 22 89999 999888754                346899999987764 34544544         


Q ss_pred             --CCceEEeCCCCcEEEEecCc---eEEeccCC
Q 036585          262 --EPPVIKWAPGSLMFVTGSSE---LSFWIPDL  289 (304)
Q Consensus       262 --~i~~~~~~~~~~~l~s~~~d---~~iw~~~~  289 (304)
                        .+..++|+|+|+.|+.++.+   ..||.++.
T Consensus       350 ~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~  382 (396)
T 3c5m_A          350 QITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV  382 (396)
T ss_dssp             STTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             cCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence              25678999999988877654   66776654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.88  E-value=3.8e-19  Score=138.61  Aligned_cols=237  Identities=9%  Similarity=0.109  Sum_probs=171.3

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeec------ccccceeEEEEc-cCCCeEEEEecCCCCCceEEEEcc
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN------SKKYGVDLVCFT-SHPTTVIYSSKNGWDESLRLLSLH   90 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~~~~~~~~d~~i~vwd~~   90 (304)
                      +..+.+.++|+++++...++.|.+||.+ ++.+..+.      ++...+..+++. +++..+++....  ++.|.+|| .
T Consensus        32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~--~~~i~~~d-~  107 (286)
T 1q7f_A           32 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP--THQIQIYN-Q  107 (286)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG--GCEEEEEC-T
T ss_pred             CceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC--CCEEEEEC-C
Confidence            4557788899988888889999999977 56555553      233568899994 666655555321  68999999 5


Q ss_pred             Cceeeeecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEe
Q 036585           91 DNKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSV  169 (304)
Q Consensus        91 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (304)
                      +++.+..+. .+...+..+++.|+++++++...++.|.+||.. ++....+..                           
T Consensus       108 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~---------------------------  159 (286)
T 1q7f_A          108 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGC---------------------------  159 (286)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC---------------------------
T ss_pred             CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCC---------------------------
Confidence            566655553 234578999999999988887788999999964 333222211                           


Q ss_pred             cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC-cEEEEecC
Q 036585          170 GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-SVHAWSVR  248 (304)
Q Consensus       170 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~v~d~~  248 (304)
                      ..+...+..++++|+|+++++...++.|++||. +++.+..+... .+...+..++++|+|+++++...++ .|.+||. 
T Consensus       160 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~-g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-  236 (286)
T 1q7f_A          160 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-  236 (286)
T ss_dssp             TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-
T ss_pred             CCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccC-CccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-
Confidence            122345788999999998777778999999997 45555555421 2235678999999999888887776 9999995 


Q ss_pred             CCceeeeeeccCC--CCceEEeCCCCcEEEEecCc-eEEeccCC
Q 036585          249 SGKEVASWMSFDT--EPPVIKWAPGSLMFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       249 ~~~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~d-~~iw~~~~  289 (304)
                      +++.+..+..+..  .+.+++++|+|+++++.... +++|++..
T Consensus       237 ~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          237 DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence            5677777755543  36789999999988775433 99998754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.88  E-value=2.4e-20  Score=162.12  Aligned_cols=243  Identities=11%  Similarity=0.077  Sum_probs=166.1

Q ss_pred             EeecccCcEEEEe--eCCCeEEEEecCCcceeeeeccccccee---------EEEEc--cCCCe-EEEEecCCCCCceEE
Q 036585           21 LQSMEVGIYLVTA--SDDESIRLYDVTAATCLKTINSKKYGVD---------LVCFT--SHPTT-VIYSSKNGWDESLRL   86 (304)
Q Consensus        21 i~~~~~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~~~~~~d~~i~v   86 (304)
                      +.+++++-+++..  +.++...||....+.....+..+...+.         ...|+  ||++. |+.+...  +..|.+
T Consensus        29 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~--~~~l~~  106 (662)
T 3azo_A           29 VGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG--DQRLYA  106 (662)
T ss_dssp             EEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT--TCCEEE
T ss_pred             eEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC--CCeEEE
Confidence            4556655556666  5578899999655555666666665555         56665  99999 7777642  556666


Q ss_pred             EEcc--C-ceeeeeccc-----ccccEEEEEEcCCCCEEEEcccC----------CeEEEEeCCc------ceeeceEEE
Q 036585           87 LSLH--D-NKYSRYFKG-----HHDRVVLLSLCSSKDCFISGSLD----------RTVLLWDQRA------EKCQGLLRV  142 (304)
Q Consensus        87 wd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~~~  142 (304)
                      +++.  . ++ ...+..     |...+..++|+|||+.|++++.+          ..|++||+.+      +....... 
T Consensus       107 ~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~-  184 (662)
T 3azo_A          107 FEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD-  184 (662)
T ss_dssp             ECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC-
T ss_pred             EcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe-
Confidence            6665  2 33 444554     66788999999999999988876          5899999987      44321110 


Q ss_pred             eccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC--------CeEEEEEcC-CC---ceeEE
Q 036585          143 QGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME--------GHIHVLDSF-RG---TLLST  210 (304)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~~d~~-~~---~~~~~  210 (304)
                                                  .+...+..++|||||++|+.++.+        ..|++||+. ++   +....
T Consensus       185 ----------------------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l  236 (662)
T 3azo_A          185 ----------------------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL  236 (662)
T ss_dssp             ----------------------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE
T ss_pred             ----------------------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe
Confidence                                        122355678999999999987754        379999998 56   33333


Q ss_pred             EEeCCCCCCcceEEEEcCCCcEEEEecCCC--cEEEEecCCCceeeeeeccCCC--------CceEEeCCCCcEEEEecC
Q 036585          211 YNVKPVSRNSTLEASFSPEGMFVISGSGDG--SVHAWSVRSGKEVASWMSFDTE--------PPVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       211 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~s~~~  280 (304)
                      ..   .+...+..++|+|||+++++++.++  .|++||+.+++.......+...        +..++|+|+++++++++.
T Consensus       237 ~~---~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~  313 (662)
T 3azo_A          237 LG---GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK  313 (662)
T ss_dssp             EE---ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred             CC---CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc
Confidence            33   3467888999999999888888888  5677776666654433333222        567899999998888765


Q ss_pred             c-eEEecc--CCccccccccC
Q 036585          281 E-LSFWIP--DLSKLGAYVGR  298 (304)
Q Consensus       281 d-~~iw~~--~~~~~~~~~~~  298 (304)
                      . .+||.+  +..+++.+..+
T Consensus       314 ~~~~l~~~d~~~~~~~~l~~~  334 (662)
T 3azo_A          314 GAAVLGILDPESGELVDAAGP  334 (662)
T ss_dssp             SSCEEEEEETTTTEEEECCSS
T ss_pred             CccEEEEEECCCCcEEEecCC
Confidence            5 788844  44555555443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.87  E-value=3.2e-19  Score=137.77  Aligned_cols=220  Identities=9%  Similarity=0.068  Sum_probs=175.2

Q ss_pred             ccCcEEEEeeCCCeEEEEecCCcceeeeecccc-cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccc-
Q 036585           25 EVGIYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH-  102 (304)
Q Consensus        25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-  102 (304)
                      ..+++|++++.|+.|.+||.++++.+.++..+. ..+.++.++|+|+.++  +.   ++.|..||. +++.+..+..+. 
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~---~~~V~~~d~-~G~~~W~~~~~~~   76 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SY---SKGAKMITR-DGRELWNIAAPAG   76 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--EC---BSEEEEECT-TSCEEEEEECCTT
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eC---CCCEEEECC-CCCEEEEEcCCCC
Confidence            346899999999999999999999999988765 4789999999999888  33   778999999 788888887643 


Q ss_pred             ccEEEEEEcCCCCEEEEccc-CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEE
Q 036585          103 DRVVLLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF  181 (304)
Q Consensus       103 ~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  181 (304)
                      ..+.++.+.|+|+++++.+. ++.+..+|. +++.+..+......                       ..+......+++
T Consensus        77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~-----------------------~~~~~~~~~v~~  132 (276)
T 3no2_A           77 CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI-----------------------ERPHAQFRQINK  132 (276)
T ss_dssp             CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC-----------------------SSGGGSCSCCEE
T ss_pred             ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC-----------------------CcccccccCceE
Confidence            47889999999999998877 778888885 56665555432110                       011123455678


Q ss_pred             ecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccC-
Q 036585          182 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD-  260 (304)
Q Consensus       182 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-  260 (304)
                      .++|+++++...++.|..||.. |+.+.++..    ......+.+.++|+.++++..++.|..+|..+++.+.++.... 
T Consensus       133 ~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~  207 (276)
T 3no2_A          133 NKKGNYLVPLFATSEVREIAPN-GQLLNSVKL----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI  207 (276)
T ss_dssp             CTTSCEEEEETTTTEEEEECTT-SCEEEEEEC----SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS
T ss_pred             CCCCCEEEEecCCCEEEEECCC-CCEEEEEEC----CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC
Confidence            9999999999999999999987 999998883    2455667889999999999888899999999999988886432 


Q ss_pred             -----CCCceEEeCCCCcEEEEec
Q 036585          261 -----TEPPVIKWAPGSLMFVTGS  279 (304)
Q Consensus       261 -----~~i~~~~~~~~~~~l~s~~  279 (304)
                           ..+..++..++|.++++..
T Consensus       208 ~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          208 EGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             BSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CCccccccccceEcCCCCEEEEec
Confidence                 1267888899999888873

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.86  E-value=4.6e-20  Score=160.35  Aligned_cols=234  Identities=13%  Similarity=0.061  Sum_probs=160.9

Q ss_pred             ccCcE-EEEeeC-CCeEEEEecC--Ccceeeeecc-----cccceeEEEEccCCCeEEEEecCCCC----------CceE
Q 036585           25 EVGIY-LVTASD-DESIRLYDVT--AATCLKTINS-----KKYGVDLVCFTSHPTTVIYSSKNGWD----------ESLR   85 (304)
Q Consensus        25 ~~~~~-l~~~~~-d~~i~vw~~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~d----------~~i~   85 (304)
                      |||++ |+.++. +..|.++++.  +......+..     |...+..++|+|||+.|++++.   +          ..|+
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~---~~~~~~~~~~~~~i~  164 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAE---EFTGEGPSDVRRFLA  164 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEE---EECSSSTTCEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEe---cccCCCCCCceeEEE
Confidence            89988 776654 5567777765  2033445554     5677899999999999999886   5          6899


Q ss_pred             EEEccC------ceeeeecc-cccccEEEEEEcCCCCEEEEcccC--------CeEEEEeCC-cce--eeceEEEeccce
Q 036585           86 LLSLHD------NKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLD--------RTVLLWDQR-AEK--CQGLLRVQGRPA  147 (304)
Q Consensus        86 vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~~--~~~~~~~~~~~~  147 (304)
                      +||+.+      ++. ..+. .+...+..++|+|||++|+.++.+        ..|++||+. ++.  ....+..     
T Consensus       165 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~-----  238 (662)
T 3azo_A          165 AVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG-----  238 (662)
T ss_dssp             EEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE-----
T ss_pred             EEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC-----
Confidence            999988      554 3444 556788889999999999887754        379999998 452  1111111     


Q ss_pred             eEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCC--eEEEEEcCCCceeEEEEeCCCCCCc-----
Q 036585          148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG--HIHVLDSFRGTLLSTYNVKPVSRNS-----  220 (304)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~-----  220 (304)
                                             ++...+..+.|+|||++++++..++  .|++||+.+++......   .+...     
T Consensus       239 -----------------------~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~---~~~~~~~p~w  292 (662)
T 3azo_A          239 -----------------------GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR---REEEFAGPLW  292 (662)
T ss_dssp             -----------------------ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC---CSSBSSCCCC
T ss_pred             -----------------------CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc---ccccccCccc
Confidence                                   2335678899999999877887788  67777776666543322   11111     


Q ss_pred             ---ceEEEEcCCCcEEEEecCCCcEEEE--ecCCCceeeeeeccCCCCceE-EeCCCCcEEEEecCc--eEEeccC--Cc
Q 036585          221 ---TLEASFSPEGMFVISGSGDGSVHAW--SVRSGKEVASWMSFDTEPPVI-KWAPGSLMFVTGSSE--LSFWIPD--LS  290 (304)
Q Consensus       221 ---i~~~~~s~~~~~l~~~~~dg~i~v~--d~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~s~~~d--~~iw~~~--~~  290 (304)
                         +..++|+|+++++++++. +.++||  |+.+++ +..+..|...+..+ +++++.-++++++.+  ..||.++  ..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g  370 (662)
T 3azo_A          293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG  370 (662)
T ss_dssp             STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred             cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence               457899999999999988 999999  554444 66777777777777 555554455555555  5666554  44


Q ss_pred             ccccc
Q 036585          291 KLGAY  295 (304)
Q Consensus       291 ~~~~~  295 (304)
                      ++..+
T Consensus       371 ~~~~l  375 (662)
T 3azo_A          371 RARTI  375 (662)
T ss_dssp             CEEEE
T ss_pred             ceEEe
Confidence            44443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=5.3e-19  Score=142.65  Aligned_cols=230  Identities=7%  Similarity=0.058  Sum_probs=152.3

Q ss_pred             EEEEeeCC--CeEEEEec--CCcceee--eec-ccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc-Cceeeeeccc
Q 036585           29 YLVTASDD--ESIRLYDV--TAATCLK--TIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH-DNKYSRYFKG  100 (304)
Q Consensus        29 ~l~~~~~d--~~i~vw~~--~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~-~~~~~~~~~~  100 (304)
                      ++++|+..  +.|.+|++  .++++..  ... .....+..++|+|++++|++++.   + .|.+|++. +++...... 
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~---~-~v~~~~~~~~g~~~~~~~-   78 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM---K-KWSSFAVKSPTEIVHEAS-   78 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB---T-EEEEEEEEETTEEEEEEE-
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc---c-eEEEEEECCCCCEEEeeE-
Confidence            45556543  56887765  4554422  111 22346789999999999998886   6 99999997 776544322 


Q ss_pred             cc--ccEEEEEEcCCCCE--EEEcc-------------cCCeEEEEeCCc-ceeeceEEEeccceeEecCCCeEEEecCC
Q 036585          101 HH--DRVVLLSLCSSKDC--FISGS-------------LDRTVLLWDQRA-EKCQGLLRVQGRPAAAYDDQGLVFGYEKG  162 (304)
Q Consensus       101 ~~--~~v~~~~~~~~~~~--l~~~~-------------~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (304)
                      +.  +.+..++|+|++++  ++++.             .++.+.+|++.. ++....+....                  
T Consensus        79 ~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~------------------  140 (365)
T 1jof_A           79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE------------------  140 (365)
T ss_dssp             EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE------------------
T ss_pred             eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE------------------
Confidence            21  23456889999984  55554             689999999874 44332222100                  


Q ss_pred             CeEEEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcC-CCceeEEEEeC-CCCCCcceEEEEcCCCcEEEEecC-
Q 036585          163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSF-RGTLLSTYNVK-PVSRNSTLEASFSPEGMFVISGSG-  238 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~-~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~-  238 (304)
                             ..+...+..++|+|+|++++++.. ++.|++||+. +++........ +.+...+..++|+|||++|++++. 
T Consensus       141 -------~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~  213 (365)
T 1jof_A          141 -------YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             -------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             -------eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC
Confidence                   013356788999999998887654 6799999998 67654322211 113456888999999999887764 


Q ss_pred             CCcEEEEecC--CCcee---eee---e----ccCC------CCceEE-eCCCCcEEEEecC--------ceEEeccC
Q 036585          239 DGSVHAWSVR--SGKEV---ASW---M----SFDT------EPPVIK-WAPGSLMFVTGSS--------ELSFWIPD  288 (304)
Q Consensus       239 dg~i~v~d~~--~~~~~---~~~---~----~~~~------~i~~~~-~~~~~~~l~s~~~--------d~~iw~~~  288 (304)
                      ++.|.+|++.  +++..   ..+   .    +|..      .+..++ |+|||++|+++..        .+.+|+++
T Consensus       214 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence            6889999875  45542   122   1    1222      478899 9999998876542        37889885

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.86  E-value=9.3e-19  Score=153.18  Aligned_cols=239  Identities=10%  Similarity=-0.003  Sum_probs=165.6

Q ss_pred             eeeEeecccCcEEEEeeCCC-----eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCc---------
Q 036585           18 EEILQSMEVGIYLVTASDDE-----SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES---------   83 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~---------   83 (304)
                      ...+.++|||++||.++.++     .|++||+.+++.+.....+ ..+..++|+||++.|++++.   ++.         
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~---~~~~~~~~~~~~  202 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAY---PQQDGKSDGTET  202 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEEC---CCCSSCCSSSCC
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEE---CCcccccccccc
Confidence            34578999999999776543     8999999998876643322 23678999999999999987   444         


Q ss_pred             -------eEEEEccCcee----eeecccccccEEEEEEcCCCCEEEEccc-----CCeEEEEeCCc------ce-eeceE
Q 036585           84 -------LRLLSLHDNKY----SRYFKGHHDRVVLLSLCSSKDCFISGSL-----DRTVLLWDQRA------EK-CQGLL  140 (304)
Q Consensus        84 -------i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~-~~~~~  140 (304)
                             |++|++.+++.    +.....|...+..+.|+|+|++|+..+.     +..|++||+.+      +. ....+
T Consensus       203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l  282 (710)
T 2xdw_A          203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (710)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence                   99999988752    2222334556889999999998887664     56899999876      32 12222


Q ss_pred             EEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC----CeEEEEEcCCCce--eEEEEeC
Q 036585          141 RVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME----GHIHVLDSFRGTL--LSTYNVK  214 (304)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~--~~~~~~~  214 (304)
                      .                             .+...+.. .|+|+|+.|+..+..    +.|.+||+.++..  ...+..+
T Consensus       283 ~-----------------------------~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~  332 (710)
T 2xdw_A          283 I-----------------------------DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE  332 (710)
T ss_dssp             E-----------------------------CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred             e-----------------------------CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC
Confidence            1                             12223333 588999887776553    4699999987642  2334311


Q ss_pred             CCCCCcceEEEEcCCCcEEEEecCCCc--EEEEecCCCceeeeeeccCCCCceEEeCCCCcEEE-EecCc-----eEEec
Q 036585          215 PVSRNSTLEASFSPEGMFVISGSGDGS--VHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFV-TGSSE-----LSFWI  286 (304)
Q Consensus       215 ~~~~~~i~~~~~s~~~~~l~~~~~dg~--i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~d-----~~iw~  286 (304)
                       .....+..++|++++.++++...++.  |++||+.+++.+..+..+.+.+..+.++|++..++ +.+..     +.+|+
T Consensus       333 -~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          333 -HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             -CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred             -CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence             11236778999988888888888874  67778777887777877777888999999986554 32322     55555


Q ss_pred             cCCcc
Q 036585          287 PDLSK  291 (304)
Q Consensus       287 ~~~~~  291 (304)
                      +...+
T Consensus       412 ~~tg~  416 (710)
T 2xdw_A          412 LTKEE  416 (710)
T ss_dssp             TTSSS
T ss_pred             CCCCc
Confidence            54444

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.86  E-value=2.6e-20  Score=151.51  Aligned_cols=254  Identities=9%  Similarity=0.029  Sum_probs=168.3

Q ss_pred             EEEecCCcceeeeecccccceeE-----EEEccCCCeEEEEecCCCCC--ceEEEEccCceeeeecccccccEEEEEEcC
Q 036585           40 RLYDVTAATCLKTINSKKYGVDL-----VCFTSHPTTVIYSSKNGWDE--SLRLLSLHDNKYSRYFKGHHDRVVLLSLCS  112 (304)
Q Consensus        40 ~vw~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  112 (304)
                      ..++..++..+..+..|......     .+|+|||+.|++++..  ++  .|.+||+.+++.......+...+..+.|+|
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~--~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp   90 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAF--DGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP   90 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT--TSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcC--CCCceEEEEeCCCCceEEeeeCCCCCccceEEcC
Confidence            34577778888888877655555     8899999999998863  34  588889999888777766666666778999


Q ss_pred             CCCEEEEcccCCeEEEEeCCcceeeceEEEeccce----eEecCCCeEEEe------------------------cCCCe
Q 036585          113 SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA----AAYDDQGLVFGY------------------------EKGPL  164 (304)
Q Consensus       113 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------------------------~~~~~  164 (304)
                      +++.|+.++.++.|++||+.+++.......+....    ...++++..+..                        ....+
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (388)
T 3pe7_A           91 DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL  170 (388)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence            99999999999999999999887765554433211    223555544321                        11233


Q ss_pred             EEEEec--------CCCCCceEEEEec-CCcEEEEeeCC------CeEEEEEcCCCceeEEEEeCCCCC-CcceEEEEcC
Q 036585          165 DIFSVG--------GDISDANVVKFSN-DGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPVSR-NSTLEASFSP  228 (304)
Q Consensus       165 ~~~~~~--------~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~-~~i~~~~~s~  228 (304)
                      .++++.        .+...+..++|+| +|+.|+....+      ..|.++|...++......   ... ..+..++|+|
T Consensus       171 ~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~~~~sp  247 (388)
T 3pe7_A          171 MRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEGESCTHEFWVP  247 (388)
T ss_dssp             EEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTTEEEEEEEECT
T ss_pred             EEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCCcccccceECC
Confidence            334332        2345578899999 99988877653      378888876654332222   121 3577889999


Q ss_pred             CCcEEEEecC-CC----cEEEEecCCCceee--eeeccC---CCCceEEeCCCCcEEEEe---------cCc--eEEecc
Q 036585          229 EGMFVISGSG-DG----SVHAWSVRSGKEVA--SWMSFD---TEPPVIKWAPGSLMFVTG---------SSE--LSFWIP  287 (304)
Q Consensus       229 ~~~~l~~~~~-dg----~i~v~d~~~~~~~~--~~~~~~---~~i~~~~~~~~~~~l~s~---------~~d--~~iw~~  287 (304)
                      ||+.|+..+. ++    .|++||+.+++...  .+.++.   .....+.|+|||+.|+..         ..+  +.+|+.
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          248 DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred             CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence            9997765432 22    39999999887432  222210   113445899999988753         222  888888


Q ss_pred             CCccccccccC
Q 036585          288 DLSKLGAYVGR  298 (304)
Q Consensus       288 ~~~~~~~~~~~  298 (304)
                      +..++..+..+
T Consensus       328 ~~~~~~~l~~~  338 (388)
T 3pe7_A          328 KNGTQHRVARH  338 (388)
T ss_dssp             TTTEEEEEEEC
T ss_pred             cCCceEEeccc
Confidence            87766555443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.84  E-value=5.9e-18  Score=130.69  Aligned_cols=239  Identities=9%  Similarity=0.005  Sum_probs=162.9

Q ss_pred             ceeeEeecccCcEEE-EeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           17 SEEILQSMEVGIYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      .+..+.+.++|++++ +...++.|.+|+..+.........+...+..+++.++++ ++++..   ++.|.+||.......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~---~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF---NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET---TTEEEEECTTCSCCE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC---CCEEEEEeCCCceEe
Confidence            455677888998777 557788999999766543322223334678899999988 444544   789999998765433


Q ss_pred             eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC
Q 036585           96 RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD  175 (304)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (304)
                      .........+..+++.++++++++...++.|.+|+..+.......                             ......
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-----------------------------~~~~~~  151 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-----------------------------FTGLND  151 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC-----------------------------CCSCCS
T ss_pred             eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec-----------------------------cccCCC
Confidence            222223356889999999998887777889999975543221110                             012235


Q ss_pred             ceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeee
Q 036585          176 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS  255 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~  255 (304)
                      +..++++++|+++++...++.|.+||...........   .....+..++++++|.++++...++.|.+||.........
T Consensus       152 p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~  228 (270)
T 1rwi_B          152 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF---TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL  228 (270)
T ss_dssp             CCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC---SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC
T ss_pred             ceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc---cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee
Confidence            6789999999977777778899999987665433211   2335678999999998777777788999999866543332


Q ss_pred             eeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          256 WMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       256 ~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      ...+...+.+++++|+|+++++...+  +++++.+.++
T Consensus       229 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          229 PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            22333568999999999877777666  7777665544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.84  E-value=1.2e-17  Score=132.95  Aligned_cols=236  Identities=11%  Similarity=0.108  Sum_probs=163.7

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCC----CceEEEEccCcee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWD----ESLRLLSLHDNKY   94 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d----~~i~vwd~~~~~~   94 (304)
                      ..+.+.++|++++++..++.|.+||.++++.......+...+.+++++|+++.+++...   +    +.|.+||..+++.
T Consensus        48 ~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~---~~~~~~~i~~~d~~~~~~  124 (333)
T 2dg1_A           48 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLG---DFKSTGGIFAATENGDNL  124 (333)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECT---TSSSCCEEEEECTTSCSC
T ss_pred             cCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCC---CCCCCceEEEEeCCCCEE
Confidence            45677889998888888999999999887765544445668999999999987777654   5    6899999987765


Q ss_pred             eeecc--cccccEEEEEEcCCCCEEEEccc------CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585           95 SRYFK--GHHDRVVLLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI  166 (304)
Q Consensus        95 ~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (304)
                      ...+.  .+...+..+.++|+++++++...      .+.|..+|..+++......                         
T Consensus       125 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------------------  179 (333)
T 2dg1_A          125 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-------------------------  179 (333)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-------------------------
T ss_pred             EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-------------------------
Confidence            43332  23457899999999987776653      3566666665443322111                         


Q ss_pred             EEecCCCCCceEEEEecCCcEEEEe-eCCCeEEEEEcCC-CceeEEE-----EeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585          167 FSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFR-GTLLSTY-----NVKPVSRNSTLEASFSPEGMFVISGSGD  239 (304)
Q Consensus       167 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~-~~~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~d  239 (304)
                           ....+..++|+|+++.++++ +.++.|.+||+.+ +.....+     ..... ...+..++++++|+++++...+
T Consensus       180 -----~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~  253 (333)
T 2dg1_A          180 -----NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQ  253 (333)
T ss_dssp             -----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETT
T ss_pred             -----CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCC
Confidence                 11245779999999866554 5678999999864 3332221     11111 2467789999999988877778


Q ss_pred             CcEEEEecCCCceeeeeeccCC------CCceEEeCCCCcEEEEecCc------eEEeccCC
Q 036585          240 GSVHAWSVRSGKEVASWMSFDT------EPPVIKWAPGSLMFVTGSSE------LSFWIPDL  289 (304)
Q Consensus       240 g~i~v~d~~~~~~~~~~~~~~~------~i~~~~~~~~~~~l~s~~~d------~~iw~~~~  289 (304)
                      +.|.+||. +++.+..+..+..      .+.+++|+|++..|+.++.+      ..||.++.
T Consensus       254 ~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          254 GRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             TEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             CEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence            89999998 5666666654432      68999999998666544332      56776544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.84  E-value=8e-18  Score=133.60  Aligned_cols=229  Identities=11%  Similarity=0.093  Sum_probs=163.7

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEe-cCCCCCceEEEEccCceeeeeccccc--
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSS-KNGWDESLRLLSLHDNKYSRYFKGHH--  102 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~d~~i~vwd~~~~~~~~~~~~~~--  102 (304)
                      .++++++...++.|.+||..+++.+.++.. ......+++++++ .++++. .   ++.|.+||..+++....+....  
T Consensus        53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g-~lyv~~~~---~~~v~~iD~~t~~~~~~i~~g~~~  127 (328)
T 3dsm_A           53 DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDE-KAYVTQIW---DYRIFIINPKTYEITGYIECPDMD  127 (328)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETT-EEEEEEBS---CSEEEEEETTTTEEEEEEECTTCC
T ss_pred             CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCC-eEEEEECC---CCeEEEEECCCCeEEEEEEcCCcc
Confidence            355566666678999999999999888853 3568899999998 555555 5   8999999999988776655322  


Q ss_pred             ---ccEEEEEEcCCCCEEEEcc-cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585          103 ---DRVVLLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV  178 (304)
Q Consensus       103 ---~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  178 (304)
                         .....+++ .++..+++.. .++.|.++|+++++....+...                              .....
T Consensus       128 ~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g------------------------------~~p~~  176 (328)
T 3dsm_A          128 MESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG------------------------------IQPTS  176 (328)
T ss_dssp             TTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS------------------------------SCBCC
T ss_pred             ccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC------------------------------CCccc
Confidence               14456666 3444444433 4889999999998776655421                              23456


Q ss_pred             EEEecCCcEEEEeeCC----------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC
Q 036585          179 VKFSNDGRLMLLTTME----------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR  248 (304)
Q Consensus       179 ~~~~~~~~~l~~~~~d----------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~  248 (304)
                      ++++|+|++++++..+          +.|.++|..+++....+...  .......++|+|++++|+++..  .|.+||+.
T Consensus       177 i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~--~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~  252 (328)
T 3dsm_A          177 LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK--LGDWPSEVQLNGTRDTLYWINN--DIWRMPVE  252 (328)
T ss_dssp             CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC--TTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred             eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC--CCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence            8899999977776554          79999999999888777632  1346789999999999988765  89999998


Q ss_pred             CCceeee--eeccCCCCceEEeCCC-CcEEEEe----cCc--eEEeccCCccccc
Q 036585          249 SGKEVAS--WMSFDTEPPVIKWAPG-SLMFVTG----SSE--LSFWIPDLSKLGA  294 (304)
Q Consensus       249 ~~~~~~~--~~~~~~~i~~~~~~~~-~~~l~s~----~~d--~~iw~~~~~~~~~  294 (304)
                      +++....  +.........++++|+ +.++++.    ..+  +.+|+.+.+.+..
T Consensus       253 t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~  307 (328)
T 3dsm_A          253 ADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDE  307 (328)
T ss_dssp             CSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEE
T ss_pred             CCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEE
Confidence            8775321  2222456889999994 5555554    233  8888887554443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=9.2e-19  Score=153.86  Aligned_cols=259  Identities=11%  Similarity=0.075  Sum_probs=159.0

Q ss_pred             EeecccCcEEEEeeCC---------CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC
Q 036585           21 LQSMEVGIYLVTASDD---------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   91 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d---------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~   91 (304)
                      +.++|||++|+.++.+         +.+.+||+.+++.. .+..|...+...+|||||+.|+.+.    ++.|++|++.+
T Consensus        67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~----~~~i~~~~~~~  141 (740)
T 4a5s_A           67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW----NNDIYVKIEPN  141 (740)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE----TTEEEEESSTT
T ss_pred             eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE----CCeEEEEECCC
Confidence            6789999999999876         55679999988754 4666777899999999999999996    88999999988


Q ss_pred             ceeeee-cccccccE-----------------EEEEEcCCCCEEEEcccCC-eEEEEeCCcceeeceEEEeccceeEec-
Q 036585           92 NKYSRY-FKGHHDRV-----------------VLLSLCSSKDCFISGSLDR-TVLLWDQRAEKCQGLLRVQGRPAAAYD-  151 (304)
Q Consensus        92 ~~~~~~-~~~~~~~v-----------------~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~-  151 (304)
                      ++..+. ..++...+                 ..+.|+|||+.|+.++.|. .+.+|++........ .......+.+. 
T Consensus       142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~-~~~~~~~~~yp~  220 (740)
T 4a5s_A          142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL-QYPKTVRVPYPK  220 (740)
T ss_dssp             SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC-SSCEEEEEECCB
T ss_pred             CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC-CCCcceeecCCC
Confidence            775442 22333223                 3489999999999887554 377776532211100 00000001111 


Q ss_pred             -----CCCeEEEe--cC---C-CeEEEEec------CCCCCceEEEEecCCcEEEEeeC----CCeEEEEEcCCCc----
Q 036585          152 -----DQGLVFGY--EK---G-PLDIFSVG------GDISDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGT----  206 (304)
Q Consensus       152 -----~~~~~~~~--~~---~-~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~----  206 (304)
                           +...+...  ..   + .+....+.      ++...+..++|+|||+.++....    +..|++||+.+++    
T Consensus       221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~  300 (740)
T 4a5s_A          221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN  300 (740)
T ss_dssp             TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred             CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc
Confidence                 11111111  11   1 00122222      25566888999999997665433    3479999999887    


Q ss_pred             ee--EEE-EeCCCCCCcce-----EEEEcCCCcEEE-Eec-CCC--cEEEEecCCCceeeeeeccCCCCceEE-eCCCCc
Q 036585          207 LL--STY-NVKPVSRNSTL-----EASFSPEGMFVI-SGS-GDG--SVHAWSVRSGKEVASWMSFDTEPPVIK-WAPGSL  273 (304)
Q Consensus       207 ~~--~~~-~~~~~~~~~i~-----~~~~s~~~~~l~-~~~-~dg--~i~v~d~~~~~~~~~~~~~~~~i~~~~-~~~~~~  273 (304)
                      +.  ..+ ..  .+...+.     ...|+|||+.|+ ..+ .+|  .|++||+.+++.. .+......+..+. ++ ++.
T Consensus       301 ~~~~~~l~~~--~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~~d-~~~  376 (740)
T 4a5s_A          301 CLVARQHIEM--STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEALT-SDY  376 (740)
T ss_dssp             ECGGGCEEEE--CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEEEC-SSE
T ss_pred             eeEEEEeeec--cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEEEe-CCE
Confidence            21  222 11  2444433     688999999876 554 333  5888998766554 4443445555554 33 344


Q ss_pred             EEEEecC--c----eEEeccCC
Q 036585          274 MFVTGSS--E----LSFWIPDL  289 (304)
Q Consensus       274 ~l~s~~~--d----~~iw~~~~  289 (304)
                      +++++..  +    ..||.++.
T Consensus       377 i~f~~~~~~~~~~~~~ly~v~~  398 (740)
T 4a5s_A          377 LYYISNEYKGMPGGRNLYKIQL  398 (740)
T ss_dssp             EEEEESCGGGCTTCBEEEEEET
T ss_pred             EEEEEecCCCCCceeEEEEEEC
Confidence            4455554  2    67776654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.82  E-value=1.9e-18  Score=150.86  Aligned_cols=242  Identities=12%  Similarity=0.004  Sum_probs=159.2

Q ss_pred             eeeEeecccCcEEE-----EeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCc---------
Q 036585           18 EEILQSMEVGIYLV-----TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES---------   83 (304)
Q Consensus        18 ~~~i~~~~~~~~l~-----~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~---------   83 (304)
                      ...+.++|||++||     .|+.+..|++||+.+++.+..-.........++|+||++.|++++.   |..         
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~---d~~~~~~~~~~~  199 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWL---PTDPSIKVDERP  199 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEEC---CCCTTSCGGGGG
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEe---cCCCCCccccCC
Confidence            34578999999999     4445578999999998865111111111267999999999999987   554         


Q ss_pred             ----eEEEEccCce----eeeecccccccEEEEEEcCCCCEEEEcccCC----eEEEEeCCcceeeceEEEeccceeEec
Q 036585           84 ----LRLLSLHDNK----YSRYFKGHHDRVVLLSLCSSKDCFISGSLDR----TVLLWDQRAEKCQGLLRVQGRPAAAYD  151 (304)
Q Consensus        84 ----i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~  151 (304)
                          |++|++.+++    .+.....+...+..+.|+|+|++|+..+.++    .|++|+..++.......          
T Consensus       200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~----------  269 (695)
T 2bkl_A          200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK----------  269 (695)
T ss_dssp             GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE----------
T ss_pred             CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec----------
Confidence                9999998875    3333344556789999999999888877665    67777654443222111          


Q ss_pred             CCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC----CCeEEEEEcCCCce--eEEEEeCCCCCCcceEEE
Q 036585          152 DQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEAS  225 (304)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~--~~~~~~~~~~~~~i~~~~  225 (304)
                                          +...+....+ ++|. ++..+.    ++.|.+||+.+++.  ...+... .....+..++
T Consensus       270 --------------------~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~l~~~~  326 (695)
T 2bkl_A          270 --------------------GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE-DSSASLLSVS  326 (695)
T ss_dssp             --------------------CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC-CSSCEEEEEE
T ss_pred             --------------------CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecC-CCCCeEEEEE
Confidence                                2223444555 6677 554443    57899999987653  2333311 1245677888


Q ss_pred             EcCCCcEEEEecCCCcEEEEecC-CCceeeeeecc-CCCCceEEeCCCCcEEEEec-C---c--eEEeccCCccccccc
Q 036585          226 FSPEGMFVISGSGDGSVHAWSVR-SGKEVASWMSF-DTEPPVIKWAPGSLMFVTGS-S---E--LSFWIPDLSKLGAYV  296 (304)
Q Consensus       226 ~s~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~-~---d--~~iw~~~~~~~~~~~  296 (304)
                      |+ ++.++++...|+..++|.+. +++....+..+ .+.+..+.++|++..++... +   .  +.+|+.+..+...+.
T Consensus       327 ~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~  404 (695)
T 2bkl_A          327 IV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA  404 (695)
T ss_dssp             EE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             EE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence            88 77788888889988877654 45555666544 56678889999987665322 2   2  666776655544443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.82  E-value=1.3e-16  Score=134.65  Aligned_cols=259  Identities=14%  Similarity=0.128  Sum_probs=180.1

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc--Cceeeeecccccc
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH--DNKYSRYFKGHHD  103 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~--~~~~~~~~~~~~~  103 (304)
                      .+.++++...++.|.++|..+++.+.++.... .+..+.|+|+++++++++.   |+.|.+||+.  +++.+..+... .
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~---dg~V~viD~~~~t~~~v~~i~~G-~  240 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGR---DGKVNMIDLWMKEPTTVAEIKIG-S  240 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCCEEEEEECC-S
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcC---CCeEEEEECCCCCCcEeEEEecC-C
Confidence            35567777788999999999999998887543 5679999999999999987   9999999995  77777776643 3


Q ss_pred             cEEEEEEc----CCCCEEEEccc-CCeEEEEeCCcceeeceEEEecc-------------ceeEecCCC--eEE-EecCC
Q 036585          104 RVVLLSLC----SSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGR-------------PAAAYDDQG--LVF-GYEKG  162 (304)
Q Consensus       104 ~v~~~~~~----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~--~~~-~~~~~  162 (304)
                      ....++|+    |+|++++++.. ++.+.++|..+.+.+..+.....             ..+..++++  .++ ..+.+
T Consensus       241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g  320 (567)
T 1qks_A          241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  320 (567)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence            46789999    69998887664 58999999999888776654221             112223322  111 12223


Q ss_pred             CeEEEEecC----------CCCCceEEEEecCCcEEEEee-CCCeEEEEEcCCCceeEEEEe-C-CCCCCcceEEEEcCC
Q 036585          163 PLDIFSVGG----------DISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNV-K-PVSRNSTLEASFSPE  229 (304)
Q Consensus       163 ~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~-~-~~~~~~i~~~~~s~~  229 (304)
                      .+.+.+...          .......+.|+|+|++++++. .++.|.++|+.+++....+.. . ..|.+.-..+ ++|+
T Consensus       321 ~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~  399 (567)
T 1qks_A          321 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPT  399 (567)
T ss_dssp             EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETT
T ss_pred             eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCC
Confidence            343333221          123455789999999987765 578999999999998887764 2 1222212122 5887


Q ss_pred             CcEE-EEec-CCCcEEEEecCC-------CceeeeeeccCCCCceEEeCCCCcEEEEec--------Cc-eEEeccCCc
Q 036585          230 GMFV-ISGS-GDGSVHAWSVRS-------GKEVASWMSFDTEPPVIKWAPGSLMFVTGS--------SE-LSFWIPDLS  290 (304)
Q Consensus       230 ~~~l-~~~~-~dg~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--------~d-~~iw~~~~~  290 (304)
                      +..+ +++. .++.|.++|..+       .+.++++......-..+..+|+++++.+..        .+ +.+++.+..
T Consensus       400 ~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          400 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            5544 4443 468999999987       567777765544445688999999888755        23 888887543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.82  E-value=1.6e-18  Score=141.33  Aligned_cols=254  Identities=9%  Similarity=0.016  Sum_probs=159.8

Q ss_pred             EEEecCCcceeeeecccccc-----eeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCC
Q 036585           40 RLYDVTAATCLKTINSKKYG-----VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSK  114 (304)
Q Consensus        40 ~vw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  114 (304)
                      ...|..+++.+..+..+...     +..++|+|+|+.|++....+.+..|.+||+.+++.......+......+.|+|++
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg   92 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE   92 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence            34577788777777655433     6788999999999888753224578889998887655444333223347899999


Q ss_pred             CEEEEcccCCeEEEEeCCcceeeceEEEeccce---------------------eEecCCCeEEE-------ecCCCeEE
Q 036585          115 DCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA---------------------AAYDDQGLVFG-------YEKGPLDI  166 (304)
Q Consensus       115 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~-------~~~~~~~~  166 (304)
                      +.|+.++.++.|++||+.+++.......+....                     ..+++++..+.       .....+.+
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred             CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence            999999999999999998876554443221110                     12233322111       11112333


Q ss_pred             EEec--------CCCCCceEEEEec-CCcEEEEeeCC------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc
Q 036585          167 FSVG--------GDISDANVVKFSN-DGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  231 (304)
Q Consensus       167 ~~~~--------~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  231 (304)
                      +++.        .+...+..+.|+| +++.|+..+.+      ..|.+||+..++......  ......+..++|+|||+
T Consensus       173 ~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~~~~spdg~  250 (396)
T 3c5m_A          173 VDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE--HAEGESCTHEFWIPDGS  250 (396)
T ss_dssp             EETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC--CCTTEEEEEEEECTTSS
T ss_pred             EECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec--cCCCccccceEECCCCC
Confidence            3322        2345677899999 78877766543      468899987654322211  01133577889999999


Q ss_pred             EEEEecCC-----CcEEEEecCCCceeeeeeccCCCCceEEeCC-CCcEEEEec------------------CceEEecc
Q 036585          232 FVISGSGD-----GSVHAWSVRSGKEVASWMSFDTEPPVIKWAP-GSLMFVTGS------------------SELSFWIP  287 (304)
Q Consensus       232 ~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~------------------~d~~iw~~  287 (304)
                      +|+.++.+     +.|++||+.+++...... ... .. +.|+| ||+++++++                  ..+.+|+.
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          251 AMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT  327 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred             EEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence            87776433     349999998876533221 111 22 89999 999888754                  12777887


Q ss_pred             CCccccccccC
Q 036585          288 DLSKLGAYVGR  298 (304)
Q Consensus       288 ~~~~~~~~~~~  298 (304)
                      +..++..+..+
T Consensus       328 ~~~~~~~l~~~  338 (396)
T 3c5m_A          328 KAKSAQKLCKH  338 (396)
T ss_dssp             TTTBCCEEEEC
T ss_pred             ccCceEEccCC
Confidence            76665555433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.81  E-value=6.8e-18  Score=134.46  Aligned_cols=238  Identities=9%  Similarity=0.090  Sum_probs=166.8

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      .+.+.+++..++..+.++.++.|   .++....+..+...+.+++|+++++.++++..   ++.|.+||..+++......
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---~~~i~~~d~~~~~~~~~~~   83 (333)
T 2dg1_A           10 TLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVF---EGNIFKINPETKEIKRPFV   83 (333)
T ss_dssp             BCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETT---TCEEEEECTTTCCEEEEEE
T ss_pred             eeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECC---CCEEEEEeCCCCcEEEEee
Confidence            45667777777777778889999   35566667666667899999999997777776   8899999998887655443


Q ss_pred             cccccEEEEEEcCCCCEEEEcccC----CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLD----RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD  175 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (304)
                      .+...+.+++++|+++++++...+    +.|.+||.+++.....+...                           .....
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------------------~~~~~  136 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL---------------------------STAYC  136 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS---------------------------SSCCC
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC---------------------------ccCCc
Confidence            466789999999999988877666    68999998776543221100                           12246


Q ss_pred             ceEEEEecCCcEEEEeeC------CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEE-ecCCCcEEEEecC
Q 036585          176 ANVVKFSNDGRLMLLTTM------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVIS-GSGDGSVHAWSVR  248 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~v~d~~  248 (304)
                      +..++++|+|+++++...      .+.|..+|..+++......    ....+..++|+|++++|+. .+.++.|++||+.
T Consensus       137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ----NISVANGIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec----CCCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence            788999999987776543      3567777766555443322    2345678999999986654 4567899999996


Q ss_pred             C-Cceeeee--------eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcccccc
Q 036585          249 S-GKEVASW--------MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKLGAY  295 (304)
Q Consensus       249 ~-~~~~~~~--------~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~~~~  295 (304)
                      + ++.+..+        .++ ..+..++++++|+++++...+  +.+|+.+.+.+..+
T Consensus       213 ~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~  269 (333)
T 2dg1_A          213 DDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQI  269 (333)
T ss_dssp             TTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEE
T ss_pred             CCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEE
Confidence            4 3332211        112 357889999999987776543  88888876555444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.80  E-value=7.6e-17  Score=126.24  Aligned_cols=214  Identities=13%  Similarity=0.119  Sum_probs=152.2

Q ss_pred             eeeeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEE
Q 036585           49 CLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVL  127 (304)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  127 (304)
                      .+..+..+.....+++|+|+++ .++++..   ++.|..|+..++  ...+..+...+.+++++|+++++++...++.|.
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~---~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~   93 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVR---QNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE   93 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGG---GTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCC---CCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence            3444555555678999999998 5666666   899999999887  555666777899999999999888877778999


Q ss_pred             EEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEE----ee-----------
Q 036585          128 LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLL----TT-----------  192 (304)
Q Consensus       128 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~-----------  192 (304)
                      +||..+++..........                         .....+..++++|+|+++++    ++           
T Consensus        94 ~~d~~~g~~~~~~~~~~~-------------------------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~  148 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEG-------------------------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEM  148 (296)
T ss_dssp             EECSTTCCEEEEECEETT-------------------------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCC
T ss_pred             EEcCCCCcEEEEeeccCC-------------------------CCCCCCCCEEECCCCCEEEECCccccccccccccccc
Confidence            999977764332211100                         01135677999999998776    33           


Q ss_pred             --CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC-CCce---eeeeeccCCCCceE
Q 036585          193 --MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR-SGKE---VASWMSFDTEPPVI  266 (304)
Q Consensus       193 --~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-~~~~---~~~~~~~~~~i~~~  266 (304)
                        ..+.|..++.. ++. ..+.   ........++|+|+++.+++.+.++.|++|++. +++.   ...+..+...+.++
T Consensus       149 ~~~~~~l~~~~~~-g~~-~~~~---~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i  223 (296)
T 3e5z_A          149 ELPGRWVFRLAPD-GTL-SAPI---RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL  223 (296)
T ss_dssp             CSSSCEEEEECTT-SCE-EEEE---CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE
T ss_pred             cCCCcEEEEECCC-CCE-EEee---cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE
Confidence              13567777655 443 3333   345567889999999988777888999999996 4544   22333355667899


Q ss_pred             EeCCCCcEEEEecCceEEeccCCcccccccc
Q 036585          267 KWAPGSLMFVTGSSELSFWIPDLSKLGAYVG  297 (304)
Q Consensus       267 ~~~~~~~~l~s~~~d~~iw~~~~~~~~~~~~  297 (304)
                      +++++|+++++....+.+|+.+.+.+..+..
T Consensus       224 ~~d~~G~l~v~~~~~v~~~~~~g~~~~~~~~  254 (296)
T 3e5z_A          224 RVDAGGLIWASAGDGVHVLTPDGDELGRVLT  254 (296)
T ss_dssp             EEBTTSCEEEEETTEEEEECTTSCEEEEEEC
T ss_pred             EECCCCCEEEEcCCeEEEECCCCCEEEEEEC
Confidence            9999999877773339999988766655543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.79  E-value=1.2e-15  Score=122.75  Aligned_cols=266  Identities=8%  Similarity=-0.055  Sum_probs=172.3

Q ss_pred             ecccCcEEEEeeC--CC---eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecC-------CCCCceEEEEcc
Q 036585           23 SMEVGIYLVTASD--DE---SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLH   90 (304)
Q Consensus        23 ~~~~~~~l~~~~~--d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------~~d~~i~vwd~~   90 (304)
                      ..++++++++...  ..   .|.++|..+++.+.++.....+  .++++||++.++++...       ..++.|.+||..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            3467777776653  22   7899999999988887755443  99999999999998620       016789999999


Q ss_pred             Cceeeeecccc-------cccEEEEEEcCCCCEEEEccc--CCeEEEEeCCcceeece-EEEeccceeEe-cCCCeEEEe
Q 036585           91 DNKYSRYFKGH-------HDRVVLLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGL-LRVQGRPAAAY-DDQGLVFGY  159 (304)
Q Consensus        91 ~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~  159 (304)
                      +.+.+..+.-.       ......+.|+|+|++|+++..  ++.|.++| .+++.... +.......+.. .+...+...
T Consensus       106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~  184 (373)
T 2mad_H          106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLC  184 (373)
T ss_pred             CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEc
Confidence            88776655321       123457899999999998764  57899999 98887766 54432211111 111122222


Q ss_pred             cCCCeEEEEecC-------------CCCC-ceEEEEecCCcEEEEeeCCCeEEEEEcCCCc--eeEEEEeCCC-------
Q 036585          160 EKGPLDIFSVGG-------------DISD-ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT--LLSTYNVKPV-------  216 (304)
Q Consensus       160 ~~~~~~~~~~~~-------------~~~~-v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~-------  216 (304)
                      .++.+..++..+             ...+ .....+.+++..++..+..+.+.+.|+.+..  ....+.....       
T Consensus       185 ~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~  264 (373)
T 2mad_H          185 AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW  264 (373)
T ss_pred             CCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccce
Confidence            333333333300             0011 1223556666555555578899999987653  2233321100       


Q ss_pred             CCCcceEEEEcCCCcEEEEecC----------CCcEEEEecCCCceeeeeeccCCCCceEEeCCCCc-EEEEecC-c--e
Q 036585          217 SRNSTLEASFSPEGMFVISGSG----------DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL-MFVTGSS-E--L  282 (304)
Q Consensus       217 ~~~~i~~~~~s~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~-d--~  282 (304)
                      .......++++|+++.++++..          .+.|.++|+.+++.+.++. -.....+++|+|||+ .++++.. +  +
T Consensus       265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V  343 (373)
T 2mad_H          265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVL  343 (373)
T ss_pred             ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeE
Confidence            1122344789999998887643          3579999999999988885 334689999999999 7777663 3  8


Q ss_pred             EEeccCCccc
Q 036585          283 SFWIPDLSKL  292 (304)
Q Consensus       283 ~iw~~~~~~~  292 (304)
                      .++|....++
T Consensus       344 ~ViD~~t~~v  353 (373)
T 2mad_H          344 HIYDAGAGDQ  353 (373)
T ss_pred             EEEECCCCCE
Confidence            8888866554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.79  E-value=2.6e-16  Score=124.91  Aligned_cols=223  Identities=5%  Similarity=0.023  Sum_probs=159.1

Q ss_pred             CCCeEEEEecCCcceeeeecc------cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEE
Q 036585           35 DDESIRLYDVTAATCLKTINS------KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLL  108 (304)
Q Consensus        35 ~d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  108 (304)
                      .+++|.++|.++++....+..      .......+++.  +..++.+...  ++.|.+||..+++.+..+. .......+
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~--~~~v~viD~~t~~~~~~i~-~~~~p~~i   89 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNN--SHVIFAIDINTFKEVGRIT-GFTSPRYI   89 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGG--GTEEEEEETTTCCEEEEEE-CCSSEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcC--CCEEEEEECcccEEEEEcC-CCCCCcEE
Confidence            378999999999887765421      11235667773  4445544432  7899999999999888775 34667899


Q ss_pred             EEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEE
Q 036585          109 SLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLM  188 (304)
Q Consensus       109 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  188 (304)
                      +++++++.+++...++.|.+||+.+++....+......                        +.......+++ .+++ +
T Consensus        90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~------------------------~~~~~p~~i~~-~~~~-l  143 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD------------------------MESGSTEQMVQ-YGKY-V  143 (328)
T ss_dssp             EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC------------------------TTTCBCCCEEE-ETTE-E
T ss_pred             EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc------------------------ccCCCcceEEE-ECCE-E
Confidence            99998854444447899999999988776655432100                        01113455677 4444 4


Q ss_pred             EEee--CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC----------CcEEEEecCCCceeeee
Q 036585          189 LLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD----------GSVHAWSVRSGKEVASW  256 (304)
Q Consensus       189 ~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----------g~i~v~d~~~~~~~~~~  256 (304)
                      +++.  .++.|.++|+.+++...++..    ......++++|+|++++++..+          +.|.++|..+++....+
T Consensus       144 yv~~~~~~~~v~viD~~t~~~~~~i~~----g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~  219 (328)
T 3dsm_A          144 YVNCWSYQNRILKIDTETDKVVDELTI----GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF  219 (328)
T ss_dssp             EEEECTTCCEEEEEETTTTEEEEEEEC----SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCCEEEEEECCCCeEEEEEEc----CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE
Confidence            4444  488999999999998888773    2345678999999987777654          78999999998877666


Q ss_pred             ecc-CCCCceEEeCCCCcEEEEecCceEEeccCCccc
Q 036585          257 MSF-DTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKL  292 (304)
Q Consensus       257 ~~~-~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~~  292 (304)
                      ... ...+..++|+|+++.|+.+...+.+|+.+..++
T Consensus       220 ~~~~g~~p~~la~~~d~~~lyv~~~~v~~~d~~t~~~  256 (328)
T 3dsm_A          220 KFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRV  256 (328)
T ss_dssp             ECCTTCCCEEEEECTTSCEEEEESSSEEEEETTCSSC
T ss_pred             ecCCCCCceeEEEecCCCEEEEEccEEEEEECCCCce
Confidence            432 346899999999998888776677777765554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.79  E-value=6.2e-16  Score=121.99  Aligned_cols=236  Identities=7%  Similarity=0.025  Sum_probs=160.5

Q ss_pred             eeeEeecccCcEEEE-------eeCCCeEEEEecCCcceeeeec----ccccceeEEEEccC-CCeEEEEecCCCCCceE
Q 036585           18 EEILQSMEVGIYLVT-------ASDDESIRLYDVTAATCLKTIN----SKKYGVDLVCFTSH-PTTVIYSSKNGWDESLR   85 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~-------~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~~~~d~~i~   85 (304)
                      ...+.+.++|+++++       ...++.|.+||..+++......    ++...+..++++++ ++.+ ++..   ...|.
T Consensus        20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~-v~~~---~~~l~   95 (314)
T 1pjx_A           20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADM---RLGLL   95 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEET---TTEEE
T ss_pred             ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEE-EEEC---CCCEE
Confidence            456777788988888       6778899999988776543222    24467889999999 6544 4443   45799


Q ss_pred             EEEccCceeeee-ccc----ccccEEEEEEcCCCCEEEEcccC---------------CeEEEEeCCcceeeceEEEecc
Q 036585           86 LLSLHDNKYSRY-FKG----HHDRVVLLSLCSSKDCFISGSLD---------------RTVLLWDQRAEKCQGLLRVQGR  145 (304)
Q Consensus        86 vwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~  145 (304)
                      +||.. ++.... ...    ....+.++++.++++++++...+               +.|..||.. ++......    
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~----  169 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT----  169 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE----
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc----
Confidence            99988 664433 221    12357899999999887776654               567777654 33221111    


Q ss_pred             ceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEe----cCCcEEEEe-eCCCeEEEEEcC-CCceeE--EEEeCCCC
Q 036585          146 PAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS----NDGRLMLLT-TMEGHIHVLDSF-RGTLLS--TYNVKPVS  217 (304)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~~~d~~-~~~~~~--~~~~~~~~  217 (304)
                                                +......++++    |+++.++++ ..++.|.+||.. +++...  .+.....+
T Consensus       170 --------------------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  223 (314)
T 1pjx_A          170 --------------------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT  223 (314)
T ss_dssp             --------------------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             --------------------------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence                                      11234678999    999766555 567899999986 444221  22221122


Q ss_pred             C-CcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEe-cCc--eEEeccCC
Q 036585          218 R-NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTG-SSE--LSFWIPDL  289 (304)
Q Consensus       218 ~-~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~d--~~iw~~~~  289 (304)
                      . .....++++++|+++++...++.|.+||..+++.+..+..+...+.+++|+|+++.|+.+ ..+  +..|+++.
T Consensus       224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            2 567889999999988887778899999998787777776666789999999999855444 443  66666554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.79  E-value=1.8e-16  Score=126.05  Aligned_cols=244  Identities=11%  Similarity=0.064  Sum_probs=170.2

Q ss_pred             EeecccCcEEEEeeC-----CCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecC-------CCCCceEEEE
Q 036585           21 LQSMEVGIYLVTASD-----DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLS   88 (304)
Q Consensus        21 i~~~~~~~~l~~~~~-----d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------~~d~~i~vwd   88 (304)
                      +...|+++.+++...     ++.|.+.|..+++.+.++.....+ . ++++|++++++++...       ..++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            345688888887765     679999999999999988865555 4 9999999999887520       0157899999


Q ss_pred             ccCceeeeeccccc-------ccEEEEEEcCCCCEEEEccc--CCeEEEEeCCcceeeceEEEecc---------ceeEe
Q 036585           89 LHDNKYSRYFKGHH-------DRVVLLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGR---------PAAAY  150 (304)
Q Consensus        89 ~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~---------~~~~~  150 (304)
                      ..+.+.+..+.-..       .....+.|+|||++++++..  ++.|.++|+.+.+....+...+.         .....
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~  195 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH  195 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEE
Confidence            99998877764211       13456899999999888753  68999999999887766543211         01122


Q ss_pred             cCCCe----------------------------------------EEEecCCCeEEEEecCCC-----------------
Q 036585          151 DDQGL----------------------------------------VFGYEKGPLDIFSVGGDI-----------------  173 (304)
Q Consensus       151 ~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~-----------------  173 (304)
                      ++++.                                        ++....+.+.+.+..+..                 
T Consensus       196 ~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~  275 (386)
T 3sjl_D          196 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD  275 (386)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHT
T ss_pred             CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccc
Confidence            22221                                        122223333334432221                 


Q ss_pred             ----CCceEEEEecCCcEEEEeeC----------CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc-EEEEe-c
Q 036585          174 ----SDANVVKFSNDGRLMLLTTM----------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISG-S  237 (304)
Q Consensus       174 ----~~v~~~~~~~~~~~l~~~~~----------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~-~  237 (304)
                          .....++++|+++.+++...          .++|.++|+.+++.+.++..    ...+..++++||++ +|++. .
T Consensus       276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v----g~~~~~lavs~D~~~~ly~tn~  351 (386)
T 3sjl_D          276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALST  351 (386)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECSSSSCEEEEEET
T ss_pred             cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC----CCCcceEEECCCCCeEEEEEcC
Confidence                12234677788887777643          24799999999999988873    34778899999996 66665 4


Q ss_pred             CCCcEEEEecCCCceeeeeeccCCCCceEEeCCC
Q 036585          238 GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       238 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~  271 (304)
                      .++.|.++|..+++.+.++... +..+.|.+++|
T Consensus       352 ~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          352 GDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             TTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             CCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence            5899999999999999888643 44567777776

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.78  E-value=1.2e-16  Score=139.77  Aligned_cols=235  Identities=8%  Similarity=0.054  Sum_probs=155.1

Q ss_pred             cccCcEEEEeeCCC-----eEEEEecCCcceeeeec------ccccceeEEEEccCCCeEEEEecCCCC--CceEEEEcc
Q 036585           24 MEVGIYLVTASDDE-----SIRLYDVTAATCLKTIN------SKKYGVDLVCFTSHPTTVIYSSKNGWD--ESLRLLSLH   90 (304)
Q Consensus        24 ~~~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~~~~d--~~i~vwd~~   90 (304)
                      .++|++++....++     .+.+.+..+++....+.      +|...+..++|||||++|+.+...+.+  ..|++||+.
T Consensus        80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~  159 (710)
T 2xdw_A           80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD  159 (710)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred             EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence            48898877665432     34444444444322221      233468899999999999988762101  289999999


Q ss_pred             CceeeeecccccccEEEEEEcCCCCEEEEcccCCe----------------EEEEeCCcceeeceEEEeccceeEecCCC
Q 036585           91 DNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRT----------------VLLWDQRAEKCQGLLRVQGRPAAAYDDQG  154 (304)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  154 (304)
                      +++.......+ ..+..++|+||++.|+.++.++.                |++|++.+++....+..            
T Consensus       160 tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~------------  226 (710)
T 2xdw_A          160 GAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA------------  226 (710)
T ss_dssp             TTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE------------
T ss_pred             CCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe------------
Confidence            99876543322 23677999999999998887765                99999887653222211            


Q ss_pred             eEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-----CCeEEEEEcCC------Cc-eeEEEEeCCCCCCcce
Q 036585          155 LVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-----EGHIHVLDSFR------GT-LLSTYNVKPVSRNSTL  222 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~------~~-~~~~~~~~~~~~~~i~  222 (304)
                                   ....+...+..+.|+|||++|+..+.     +..|++||+.+      +. ....+.   .+...+.
T Consensus       227 -------------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~---~~~~~~~  290 (710)
T 2xdw_A          227 -------------EFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI---DNFEGEY  290 (710)
T ss_dssp             -------------CCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE---CSSSSCE
T ss_pred             -------------ccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee---CCCCcEE
Confidence                         11123344678999999999988764     56899999986      43 344454   2344444


Q ss_pred             EEEEcCCCcEEEEecCC----CcEEEEecCCCce--eeeeeccCC--CCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          223 EASFSPEGMFVISGSGD----GSVHAWSVRSGKE--VASWMSFDT--EPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       223 ~~~~s~~~~~l~~~~~d----g~i~v~d~~~~~~--~~~~~~~~~--~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      . .|+|+|+.|+..+..    +.|.+||+.+++.  ...+..|..  .+..+.|++++.++++...+  .+||.++
T Consensus       291 ~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~  365 (710)
T 2xdw_A          291 D-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD  365 (710)
T ss_dssp             E-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred             E-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEE
Confidence            3 588998887766543    3699999987642  345544543  57789999888888888777  4455443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=6.8e-17  Score=128.41  Aligned_cols=201  Identities=9%  Similarity=0.082  Sum_probs=148.4

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcc-eeeee---------cccccceeEEEEcc-CCCeEEEEe-cCCCCCceE
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAAT-CLKTI---------NSKKYGVDLVCFTS-HPTTVIYSS-KNGWDESLR   85 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~~~~d~~i~   85 (304)
                      +..+.+.++|+++++...++.|++|+..... .+..+         ..+...+..++++| ++..+++.+ .   ++.|+
T Consensus        93 p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~---~~~I~  169 (329)
T 3fvz_A           93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC---NSRIV  169 (329)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS---CCEEE
T ss_pred             ceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC---CCeEE
Confidence            4557888999999988889999999976442 44544         23444688999999 677777765 5   89999


Q ss_pred             EEEccCceeeeeccc----------ccccEEEEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCC
Q 036585           86 LLSLHDNKYSRYFKG----------HHDRVVLLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG  154 (304)
Q Consensus        86 vwd~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  154 (304)
                      +|+ .+++.+..+..          +......++++|+ +.++++...++.|++||..+++....+...           
T Consensus       170 ~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-----------  237 (329)
T 3fvz_A          170 QFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-----------  237 (329)
T ss_dssp             EEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-----------
T ss_pred             EEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-----------
Confidence            999 55666665532          2234889999998 777777778899999999877665544311           


Q ss_pred             eEEEecCCCeEEEEecCCCCCceEEEEec------CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC
Q 036585          155 LVFGYEKGPLDIFSVGGDISDANVVKFSN------DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP  228 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~  228 (304)
                                      .+...+..++++|      +|+..++...+..|++||..+++.+..+.....+......++++|
T Consensus       238 ----------------~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~  301 (329)
T 3fvz_A          238 ----------------SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE  301 (329)
T ss_dssp             ----------------TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred             ----------------ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence                            2334566777777      444333344556899999999998888753334566788999999


Q ss_pred             CCcEEEEecCCCcEEEEecCC
Q 036585          229 EGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       229 ~~~~l~~~~~dg~i~v~d~~~  249 (304)
                      +|.++++...++.|++|++..
T Consensus       302 dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          302 DGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             TSEEEEEESSSCCEEEEEEEE
T ss_pred             CCCEEEEECCCCEEEEEeCCc
Confidence            998888888899999999853

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.78  E-value=1.4e-14  Score=113.27  Aligned_cols=263  Identities=7%  Similarity=0.035  Sum_probs=174.1

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeee-ecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ...+...++|+++++...++.|.+||.. ++.... +..+...+..+++.+++...++...   ++.|..||........
T Consensus        17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~~~~g~~~~~   92 (299)
T 2z2n_A           17 PYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENA---ANKIGRITKKGIIKEY   92 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETT---TTEEEEECTTSCEEEE
T ss_pred             ccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCC---CCeEEEECCCCcEEEE
Confidence            4457777889888877668899999987 543322 2234467899999999987777665   7889999976322112


Q ss_pred             ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEE---eccceeEecCCCeEEEec--CCCeEEEE---
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV---QGRPAAAYDDQGLVFGYE--KGPLDIFS---  168 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~---  168 (304)
                      .+......+..+++.+++.++++...++.|..||. +++.......   .....+.+++++.++...  .+.+..++   
T Consensus        93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g  171 (299)
T 2z2n_A           93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITESG  171 (299)
T ss_dssp             ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTC
T ss_pred             eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCC
Confidence            22224457899999999988888777889999998 4433221111   112245566666554333  23333332   


Q ss_pred             ------ecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcE
Q 036585          169 ------VGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV  242 (304)
Q Consensus       169 ------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  242 (304)
                            .......+..++++++|+++++...++.|.+||. +++.. .+... .....+..++++++|+.+++...++.|
T Consensus       172 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i  248 (299)
T 2z2n_A          172 DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIP-TPNARPHAITAGAGIDLWFTEWGANKI  248 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECS-STTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred             cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECC-CCCCCceeEEECCCCCEEEeccCCceE
Confidence                  2223445778999999997766667889999998 66643 33322 244678899999999877776677889


Q ss_pred             EEEecCCCceeeee--eccCCCCceEEeCCCCcEEEEecCc-eEEeccCCcc
Q 036585          243 HAWSVRSGKEVASW--MSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSK  291 (304)
Q Consensus       243 ~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~  291 (304)
                      ..||. +++. ..+  ..+...+.++++ +++.+.++...+ +..++.+..+
T Consensus       249 ~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~  297 (299)
T 2z2n_A          249 GRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKDN  297 (299)
T ss_dssp             EEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC---
T ss_pred             EEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCccc
Confidence            99998 4443 333  344567899999 998887776555 6666665543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.77  E-value=1.8e-15  Score=127.67  Aligned_cols=270  Identities=10%  Similarity=0.039  Sum_probs=176.0

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecC--CcceeeeecccccceeEEEEc----cCCCeEEEEecCCCCCceEEEEccC
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVT--AATCLKTINSKKYGVDLVCFT----SHPTTVIYSSKNGWDESLRLLSLHD   91 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~~~~d~~i~vwd~~~   91 (304)
                      ...+.++|+|+++++++.|+.|.+||+.  +++.+.++.... ....++|+    |+|++++++...  ++.|.++|..+
T Consensus       199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~--~~~v~ViD~~t  275 (567)
T 1qks_A          199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYW--PPQYVIMDGET  275 (567)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEE--TTEEEEEETTT
T ss_pred             ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEcc--CCeEEEEECCC
Confidence            3468899999999999999999999995  788888777544 46789999    699999998873  79999999999


Q ss_pred             ceeeeeccc----------ccc-cEEEEEEcCCCCE-EEEcccCCeEEEEeCCcceeeceEE---EeccceeEecCCCeE
Q 036585           92 NKYSRYFKG----------HHD-RVVLLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLR---VQGRPAAAYDDQGLV  156 (304)
Q Consensus        92 ~~~~~~~~~----------~~~-~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~  156 (304)
                      .+.+..+..          |.. .+..+..++++.. ++....+|.|.++|...........   ........+++++.+
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~  355 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY  355 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCE
Confidence            887766542          222 5677778876554 4444566888888876543221111   112223445555533


Q ss_pred             E---EecCCCeEEEEecC------------CCCCceEEE-EecCCcEEE-Eee-CCCeEEEEEcCC-------CceeEEE
Q 036585          157 F---GYEKGPLDIFSVGG------------DISDANVVK-FSNDGRLML-LTT-MEGHIHVLDSFR-------GTLLSTY  211 (304)
Q Consensus       157 ~---~~~~~~~~~~~~~~------------~~~~v~~~~-~~~~~~~l~-~~~-~dg~i~~~d~~~-------~~~~~~~  211 (304)
                      +   ....+.+.+++...            ...+-.... ++|++..+. ++. .++.|.++|..+       .+.+.++
T Consensus       356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i  435 (567)
T 1qks_A          356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF  435 (567)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred             EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE
Confidence            2   11223333333221            111111222 578755444 443 468999999987       5677777


Q ss_pred             EeCCCCCCcceEEEEcCCCcEEEEecC-------CCcEEEEecCCC-----ce-eeeee--------ccCCCCceEEeCC
Q 036585          212 NVKPVSRNSTLEASFSPEGMFVISGSG-------DGSVHAWSVRSG-----KE-VASWM--------SFDTEPPVIKWAP  270 (304)
Q Consensus       212 ~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~i~v~d~~~~-----~~-~~~~~--------~~~~~i~~~~~~~  270 (304)
                      ..   ....-..+..+|++++|++...       .++|.++|+.+.     .. ...+.        .....+..+.|+|
T Consensus       436 ~~---~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (567)
T 1qks_A          436 PA---LGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK  512 (567)
T ss_dssp             EC---SCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred             ec---CCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence            63   2233344789999999998763       358999999876     21 12221        1235688999999


Q ss_pred             CCcEEEEecC------c-eEEeccCCcccc
Q 036585          271 GSLMFVTGSS------E-LSFWIPDLSKLG  293 (304)
Q Consensus       271 ~~~~l~s~~~------d-~~iw~~~~~~~~  293 (304)
                      +|+.+..+..      + |.|+|....++.
T Consensus       513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~  542 (567)
T 1qks_A          513 DGTEVWFSVWNGKDQESALVVVDDKTLELK  542 (567)
T ss_dssp             TSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             CCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence            9987766522      2 888887766554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.76  E-value=9.1e-16  Score=119.44  Aligned_cols=198  Identities=12%  Similarity=0.176  Sum_probs=141.7

Q ss_pred             eeeEee-cccCcEEEEeeC-CCeEEEEecCCcceeeeecc-cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           18 EEILQS-MEVGIYLVTASD-DESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        18 ~~~i~~-~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      ...+.+ .++++++++... ++.|++|| .+++.+..+.. +...+..++++|+++.+++...   ++.|.+||.. ++.
T Consensus        79 p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~~~~-g~~  153 (286)
T 1q7f_A           79 PNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK---VMRVIIFDQN-GNV  153 (286)
T ss_dssp             EEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETT---TTEEEEECTT-SCE
T ss_pred             ceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECC---CCEEEEEcCC-CCE
Confidence            344566 466777666643 78999999 56776666643 3456889999999987766665   8899999964 454


Q ss_pred             eeecc--cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585           95 SRYFK--GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD  172 (304)
Q Consensus        95 ~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (304)
                      +..+.  .+...+..++++|+++++++...++.|++||... +....+..                           .++
T Consensus       154 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~---------------------------~g~  205 (286)
T 1q7f_A          154 LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIGG---------------------------EGI  205 (286)
T ss_dssp             EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEESC---------------------------TTT
T ss_pred             EEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEEcc---------------------------CCc
Confidence            44443  3445689999999998888878889999999743 22222210                           112


Q ss_pred             CCCceEEEEecCCcEEEEeeCCC-eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc
Q 036585          173 ISDANVVKFSNDGRLMLLTTMEG-HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK  251 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~  251 (304)
                      ...+..++++++|+++++...++ .|.+||. +++.+..+.... ....+..++++|+|+++++ +.++.|++|++....
T Consensus       206 ~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          206 TNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             SCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             cCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            24678899999999888877775 9999995 567777776421 2234678999999987777 568999999986543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.76  E-value=4.5e-16  Score=136.84  Aligned_cols=243  Identities=14%  Similarity=0.053  Sum_probs=157.3

Q ss_pred             eeeEeecccCcEEEEeeCC-----CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCC-----------C
Q 036585           18 EEILQSMEVGIYLVTASDD-----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW-----------D   81 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-----------d   81 (304)
                      ...+.++|||++||.++.+     ..|++||+.+++.+.. ..+...+..++|+|| +.|++++....           .
T Consensus       165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~  242 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN  242 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred             EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence            3457899999999887654     3699999999887653 222223467899999 99998886211           1


Q ss_pred             CceEEEEccCcee----eeecccccccEEEEEEcCCCCEEEEcccCC-----eEEEEeCCccee--eceEEEeccceeEe
Q 036585           82 ESLRLLSLHDNKY----SRYFKGHHDRVVLLSLCSSKDCFISGSLDR-----TVLLWDQRAEKC--QGLLRVQGRPAAAY  150 (304)
Q Consensus        82 ~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~--~~~~~~~~~~~~~~  150 (304)
                      ..|++|++.+++.    +.....+...+..+.|+|||++|+..+.++     .|++||+.++..  ...+.         
T Consensus       243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---------  313 (741)
T 1yr2_A          243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---------  313 (741)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---------
T ss_pred             CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---------
Confidence            2488999977652    222223334588999999999888776544     899999877621  12221         


Q ss_pred             cCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC----CCeEEEEEcCCCc-eeEEEEeCCCCCCcceEEE
Q 036585          151 DDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGT-LLSTYNVKPVSRNSTLEAS  225 (304)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~-~~~~~~~~~~~~~~i~~~~  225 (304)
                                          .+....... ++|+|+.|+..+.    ++.|.+||+.++. ....+..  .+...+..++
T Consensus       314 --------------------~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~--~~~~~l~~~~  370 (741)
T 1yr2_A          314 --------------------PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP--ESKDNLESVG  370 (741)
T ss_dssp             --------------------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC--CCSSEEEEEE
T ss_pred             --------------------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec--CCCCeEEEEE
Confidence                                122223333 3588888887765    4569999998752 3333331  3444566777


Q ss_pred             EcCCCcEEEEecCCCcEEEEecC-CCceeeeeec-cCCCCceEEeCCCCcEEEEe-cC---c--eEEeccCCcccccc
Q 036585          226 FSPEGMFVISGSGDGSVHAWSVR-SGKEVASWMS-FDTEPPVIKWAPGSLMFVTG-SS---E--LSFWIPDLSKLGAY  295 (304)
Q Consensus       226 ~s~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~-~~---d--~~iw~~~~~~~~~~  295 (304)
                      ++ ++.++++...|+..+||.+. +++....+.. +.+.+..+.++|++..++.. ++   .  +.+|+....+...+
T Consensus       371 ~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l  447 (741)
T 1yr2_A          371 IA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW  447 (741)
T ss_dssp             EE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred             EE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence            77 66778888888877776554 4555566654 35678889999998755522 22   1  56666655444433

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.75  E-value=4.2e-16  Score=136.05  Aligned_cols=234  Identities=8%  Similarity=0.040  Sum_probs=152.5

Q ss_pred             eecccCcEEEEeeCCC---eEEEE--ecCCcceeeeec------ccccceeEEEEccCCCeEEEEecCC--CCCceEEEE
Q 036585           22 QSMEVGIYLVTASDDE---SIRLY--DVTAATCLKTIN------SKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLS   88 (304)
Q Consensus        22 ~~~~~~~~l~~~~~d~---~i~vw--~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd   88 (304)
                      ...++|++++....++   .-.+|  +...++....+.      +|...+..++|||||++|+.+...+  .+..|++||
T Consensus        74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d  153 (695)
T 2bkl_A           74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID  153 (695)
T ss_dssp             CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred             CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence            3457899888776654   23444  443444332222      3445789999999999999665421  146899999


Q ss_pred             ccCceeeeecccccccE--EEEEEcCCCCEEEEcccCCe-------------EEEEeCCcceeeceEEEeccceeEecCC
Q 036585           89 LHDNKYSRYFKGHHDRV--VLLSLCSSKDCFISGSLDRT-------------VLLWDQRAEKCQGLLRVQGRPAAAYDDQ  153 (304)
Q Consensus        89 ~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~  153 (304)
                      +.+++.+..  .+...+  ..++|+|||+.|+.++.|..             |++|++.++.....+.            
T Consensus       154 l~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv------------  219 (695)
T 2bkl_A          154 VDSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV------------  219 (695)
T ss_dssp             TTTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE------------
T ss_pred             CCCCCCcCC--cccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE------------
Confidence            999886511  121222  67899999999999888765             9999998775432221            


Q ss_pred             CeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCC----eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585          154 GLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  229 (304)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~  229 (304)
                                   +....+...+..+.|+|||++|+.++.++    .|++++..+++......    +...+....+ ++
T Consensus       220 -------------~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~----~~~~~~~~~~-~~  281 (695)
T 2bkl_A          220 -------------HERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK----GVGAKYEVHA-WK  281 (695)
T ss_dssp             -------------ECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE----CSSCCEEEEE-ET
T ss_pred             -------------EecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec----CCCceEEEEe-cC
Confidence                         11112345677899999999998887666    77888766655433333    3344555556 66


Q ss_pred             CcEEEEec---CCCcEEEEecCCCce--eeeeecc--CCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          230 GMFVISGS---GDGSVHAWSVRSGKE--VASWMSF--DTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       230 ~~~l~~~~---~dg~i~v~d~~~~~~--~~~~~~~--~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      |.+++...   .++.|.+||+.+++.  ...+..+  ...+..++|+ ++.++++...|  .+||.++
T Consensus       282 g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          282 DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            66444443   257899999987653  2334333  4457888888 67788888777  6777654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.75  E-value=2.3e-14  Score=115.31  Aligned_cols=226  Identities=12%  Similarity=0.075  Sum_probs=154.4

Q ss_pred             eEeecccCcEEEEee----------CCCeEEEEecCCcceeeeeccc-------ccceeEEEEccCCCeEEEEecCCCCC
Q 036585           20 ILQSMEVGIYLVTAS----------DDESIRLYDVTAATCLKTINSK-------KYGVDLVCFTSHPTTVIYSSKNGWDE   82 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~~~~d~   82 (304)
                      -+.++|||++++++.          .++.|.+||..+++.+.++...       ......++|+|++++|+++.... ++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~-~~  148 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA-GP  148 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC-CC
Confidence            688999999999886          3678999999998887776532       12356899999999999987411 47


Q ss_pred             ceEEEEccCceeeee-cccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeeceEE-----Eeccce---eEecC
Q 036585           83 SLRLLSLHDNKYSRY-FKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGLLR-----VQGRPA---AAYDD  152 (304)
Q Consensus        83 ~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~---~~~~~  152 (304)
                      .|.++| .+++.+.. +.. ..   ++.+.|++ +.+++.+.||.+.++|. +++......     ....+.   ..+.+
T Consensus       149 ~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~  222 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence            899999 99988777 542 22   23445544 45666778999999999 766553221     111110   01111


Q ss_pred             --CCeEEEecCCCeEEEEecCC---------------------CCCceEEEEecCCcEEEEeeC----------CCeEEE
Q 036585          153 --QGLVFGYEKGPLDIFSVGGD---------------------ISDANVVKFSNDGRLMLLTTM----------EGHIHV  199 (304)
Q Consensus       153 --~~~~~~~~~~~~~~~~~~~~---------------------~~~v~~~~~~~~~~~l~~~~~----------dg~i~~  199 (304)
                        ...++....+.+.+.++...                     ......+.++|+++.++++..          .+.|.+
T Consensus       223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V  302 (373)
T 2mad_H          223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence              12222222333333333211                     122334788999988887653          358999


Q ss_pred             EEcCCCceeEEEEeCCCCCCcceEEEEcCCCc-EEEEec-CCCcEEEEecCCCceeeee
Q 036585          200 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS-GDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       200 ~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~v~d~~~~~~~~~~  256 (304)
                      +|+.+++.+.++.    .......++|+|||+ +++++. .++.|.++|+.+++.+..+
T Consensus       303 ID~~t~~vv~~i~----~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          303 VTGLVGQTSSQIS----LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EECCCCEEEEEEE----CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            9999999999887    334678899999999 788777 5899999999999988874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.75  E-value=7.6e-16  Score=124.68  Aligned_cols=264  Identities=9%  Similarity=-0.017  Sum_probs=177.5

Q ss_pred             ccCcEEEEeeCC-----CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecC-------CCCCceEEEEccCc
Q 036585           25 EVGIYLVTASDD-----ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDN   92 (304)
Q Consensus        25 ~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------~~d~~i~vwd~~~~   92 (304)
                      +++++++++...     +.|.++|..+++.+.++.....+  .++++||++.++++...       ..++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            456666665542     69999999999999998866655  89999999999888620       01678999999999


Q ss_pred             eeeeecccc-------cccEEEEEEcCCCCEEEEccc--CCeEEEEeCCcceeeceEEEecc---------ceeEecCCC
Q 036585           93 KYSRYFKGH-------HDRVVLLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGR---------PAAAYDDQG  154 (304)
Q Consensus        93 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~  154 (304)
                      +.+..+.-.       ......+.|+||+++++++..  ++.|.+.|+.+.+.+..+.....         ..+...+++
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG  239 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG  239 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence            887766421       123456899999999998764  57899999999998877765332         112333343


Q ss_pred             eEEEe--cCCCeEE-----EEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCcee--EEEEeCCC-------CC
Q 036585          155 LVFGY--EKGPLDI-----FSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL--STYNVKPV-------SR  218 (304)
Q Consensus       155 ~~~~~--~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~~~~-------~~  218 (304)
                      .++..  ..+.+..     +..... .....+.+.+++..++..+..+.+.+.|+......  ..+.....       ..
T Consensus       240 ~~~~V~~~~~~v~~~~~~~~~v~~~-p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p  318 (426)
T 3c75_H          240 SLARVDFADGETKVTNTEVFHTEDE-LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP  318 (426)
T ss_dssp             SEEEEECCTTCCEEEECCCCSCTTS-CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred             CEEEEECCCCcEEEEeeeeeccCCC-ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence            32211  1122211     111110 01123567889888877788899999998655422  22221000       01


Q ss_pred             CcceEEEEcCCCcEEEEecC----------CCcEEEEecCCCceeeeeeccCCCCceEEeCCCCc-EEEEecC-c--eEE
Q 036585          219 NSTLEASFSPEGMFVISGSG----------DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL-MFVTGSS-E--LSF  284 (304)
Q Consensus       219 ~~i~~~~~s~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~-d--~~i  284 (304)
                      .....++++|+++.+++...          .+.|.++|+.+.+.+.++.... ....++|+||++ +++++.. +  +.+
T Consensus       319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsV  397 (426)
T 3c75_H          319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHI  397 (426)
T ss_dssp             CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred             CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEE
Confidence            11223689999988777642          3579999999999998886432 578999999998 8888774 3  999


Q ss_pred             eccCCccc
Q 036585          285 WIPDLSKL  292 (304)
Q Consensus       285 w~~~~~~~  292 (304)
                      +|....++
T Consensus       398 ID~~t~kv  405 (426)
T 3c75_H          398 YDAATGEE  405 (426)
T ss_dssp             EETTTCCE
T ss_pred             EECCCCCE
Confidence            99876554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.74  E-value=2.3e-15  Score=120.46  Aligned_cols=228  Identities=8%  Similarity=0.078  Sum_probs=146.9

Q ss_pred             ceeeEeecccCcEEEEeeCC---C--eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecC-------------
Q 036585           17 SEEILQSMEVGIYLVTASDD---E--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------------   78 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d---~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------------   78 (304)
                      ....+.++|+|++|+..+.+   +  .|.+|++.+++.......+ . +..++|+|+++.|++++..             
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            34557899999999988754   3  3778888877765544433 3 8999999999999988741             


Q ss_pred             -----------CCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCC-------eEEEEeCCcceeeceE
Q 036585           79 -----------GWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDR-------TVLLWDQRAEKCQGLL  140 (304)
Q Consensus        79 -----------~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~  140 (304)
                                 .....|++||+.+++.+..+.. . .+..+.|+|++ +++++..++       ...+|.+.+++.....
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~  214 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMF  214 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEec
Confidence                       0025799999998876455554 3 78899999999 777775432       3344443344433322


Q ss_pred             EEeccceeEecCCCe--EEEecCC------CeEEEEec---------CCCCCceE-EEEecCCcEEEEeeCCCeEEEEEc
Q 036585          141 RVQGRPAAAYDDQGL--VFGYEKG------PLDIFSVG---------GDISDANV-VKFSNDGRLMLLTTMEGHIHVLDS  202 (304)
Q Consensus       141 ~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~---------~~~~~v~~-~~~~~~~~~l~~~~~dg~i~~~d~  202 (304)
                      . . ......++++.  ++.....      ...++.+.         .+...+.. +.|+ ++ ++++++.++.+++| +
T Consensus       215 ~-~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~  289 (347)
T 2gop_A          215 E-K-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-I  289 (347)
T ss_dssp             E-E-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEECSSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-E
T ss_pred             c-C-cceeeECCCCCEEEEEEccccCCccccceEEEECCCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-E
Confidence            2 2 22233366663  3333221      22333322         23345665 8899 88 88889999999999 8


Q ss_pred             CCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcE-EEEecCCCceeeeeeccCCC
Q 036585          203 FRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV-HAWSVRSGKEVASWMSFDTE  262 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i-~v~d~~~~~~~~~~~~~~~~  262 (304)
                      .+++... +.   .+...+.+++|+|  .++++++.++.. .+|.+. ++ ...+..|...
T Consensus       290 ~~g~~~~-~~---~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~  342 (347)
T 2gop_A          290 WDGEIKP-IA---KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP  342 (347)
T ss_dssp             ESSSEEE-EE---CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred             cCCceEE-Ee---cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence            7665533 33   2467889999999  677777666654 777765 44 4455555544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.73  E-value=9.1e-15  Score=114.40  Aligned_cols=224  Identities=10%  Similarity=0.059  Sum_probs=150.1

Q ss_pred             eeEeeccc-CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           19 EILQSMEV-GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        19 ~~i~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      +...|.++ +.++++...++.|..||..+++. ..+. ....+.++++++++++ +++.    +..|.+||..+++....
T Consensus        16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l-~v~~----~~~l~~~d~~~g~~~~~   88 (297)
T 3g4e_A           16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGY-VATI----GTKFCALNWKEQSAVVL   88 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSE-EEEE----TTEEEEEETTTTEEEEE
T ss_pred             cCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCE-EEEE----CCeEEEEECCCCcEEEE
Confidence            34566664 56777777789999999987665 2332 3457899999999994 4444    56899999988764332


Q ss_pred             ccc----ccccEEEEEEcCCCCEEEEcccC---------CeEEEEeCCc-ceeeceEEEeccceeEecCCCeEEEecCCC
Q 036585           98 FKG----HHDRVVLLSLCSSKDCFISGSLD---------RTVLLWDQRA-EKCQGLLRVQGRPAAAYDDQGLVFGYEKGP  163 (304)
Q Consensus        98 ~~~----~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (304)
                      ...    ....+..+++.|+|+++++...+         ..-.+|.+.. ++......                      
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~----------------------  146 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD----------------------  146 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE----------------------
T ss_pred             EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee----------------------
Confidence            221    12457889999999966654221         2223443332 21111111                      


Q ss_pred             eEEEEecCCCCCceEEEEecCCcEEEE-eeCCCeEEEEEc--CCCcee--EEEEeCCCCCCcceEEEEcCCCcEEEEecC
Q 036585          164 LDIFSVGGDISDANVVKFSNDGRLMLL-TTMEGHIHVLDS--FRGTLL--STYNVKPVSRNSTLEASFSPEGMFVISGSG  238 (304)
Q Consensus       164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~--~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  238 (304)
                              .....+.++|+|+++.|++ .+.++.|.+||+  .++...  ..+............++++++|++.++...
T Consensus       147 --------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~  218 (297)
T 3g4e_A          147 --------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN  218 (297)
T ss_dssp             --------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET
T ss_pred             --------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC
Confidence                    1123567999999987755 455789999997  455542  222221123356778999999988777777


Q ss_pred             CCcEEEEecCCCceeeeeeccCCCCceEEeC-CCCcEEEEec
Q 036585          239 DGSVHAWSVRSGKEVASWMSFDTEPPVIKWA-PGSLMFVTGS  279 (304)
Q Consensus       239 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~  279 (304)
                      ++.|..||..+++.+..+..+...+++++|. |+++.|+.++
T Consensus       219 ~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          219 GGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             TTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            7889999998899988888777789999998 8877665444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.73  E-value=1.6e-14  Score=117.89  Aligned_cols=236  Identities=8%  Similarity=0.028  Sum_probs=157.8

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCC--ceEEEEccCcee
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE--SLRLLSLHDNKY   94 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~--~i~vwd~~~~~~   94 (304)
                      .+..+.+.++|+++++...++.|++||.++++......... ... ++|+++++.|+++..   ++  .|.+++...+..
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~---~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGW---EGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBS---STTCEEEEEEGGGTTC
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEec---CCCceEEEEEcCCCce
Confidence            34567788899988888888999999998777655544432 344 999999999888876   44  788888876544


Q ss_pred             eeec----ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           95 SRYF----KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        95 ~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      ...+    ......+.+++++|++..|+.+..++.|+.||..++... .+.....                        .
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~------------------------~  261 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLEL------------------------S  261 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCC------------------------C
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccc------------------------c
Confidence            3333    213456788999995555666777889999998866432 1110000                        0


Q ss_pred             CCCCC--ceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCC---C---------CCCcceEEEEcCCCcEEEE
Q 036585          171 GDISD--ANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---V---------SRNSTLEASFSPEGMFVIS  235 (304)
Q Consensus       171 ~~~~~--v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---~---------~~~~i~~~~~s~~~~~l~~  235 (304)
                      +....  ...++|+|+ +.++++-..++.|+.|+....  ...+....   +         .-.....++++|+|+++++
T Consensus       262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva  339 (409)
T 3hrp_A          262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV  339 (409)
T ss_dssp             SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred             CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence            11111  138999995 665666667889999997543  23333211   0         0134778999999997777


Q ss_pred             ec-CCCcEEEEecCCCceeeeeecc---------------CCCCceEEeCCCCcEEEEecCceEEe
Q 036585          236 GS-GDGSVHAWSVRSGKEVASWMSF---------------DTEPPVIKWAPGSLMFVTGSSELSFW  285 (304)
Q Consensus       236 ~~-~dg~i~v~d~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~s~~~d~~iw  285 (304)
                      -. .++.|+.|++.+++. ..+.++               -.....++++|++.++++-..+-+|+
T Consensus       340 d~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir  404 (409)
T 3hrp_A          340 DGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR  404 (409)
T ss_dssp             ETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred             eCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence            77 789999999877764 344333               23578899999987777666654443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.72  E-value=5e-15  Score=118.98  Aligned_cols=219  Identities=7%  Similarity=0.023  Sum_probs=141.3

Q ss_pred             CCCeEEEEecC---CCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcc----------cCCeEEEEeCCcc
Q 036585           68 HPTTVIYSSKN---GWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGS----------LDRTVLLWDQRAE  134 (304)
Q Consensus        68 ~~~~l~~~~~~---~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~  134 (304)
                      +++++++....   ..|+.|.+||..+++.+..+..+..+  .++|+|++++++++.          .++.|.+||+.+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            55555555321   11779999999999888887766555  899999999998876          3678999999988


Q ss_pred             eeeceEEEe--------ccceeEecCCCeEE--E-ec-CCCeEEEEecCCCC--------CceEEEEecCC-cEEEEeeC
Q 036585          135 KCQGLLRVQ--------GRPAAAYDDQGLVF--G-YE-KGPLDIFSVGGDIS--------DANVVKFSNDG-RLMLLTTM  193 (304)
Q Consensus       135 ~~~~~~~~~--------~~~~~~~~~~~~~~--~-~~-~~~~~~~~~~~~~~--------~v~~~~~~~~~-~~l~~~~~  193 (304)
                      +....+...        ....+.+++++..+  . .. .+.+.++++....-        ....+.+.|++ ..+++.+.
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~  171 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICG  171 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEET
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECC
Confidence            888777653        23457888888443  2 22 45677776543210        00012233433 33444444


Q ss_pred             CCeEEEEEcCC-Ccee-------------------------------------------------EEEEeCCC-------
Q 036585          194 EGHIHVLDSFR-GTLL-------------------------------------------------STYNVKPV-------  216 (304)
Q Consensus       194 dg~i~~~d~~~-~~~~-------------------------------------------------~~~~~~~~-------  216 (304)
                      ||.+.+|++.. ++..                                                 ..+.....       
T Consensus       172 dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~  251 (361)
T 2oiz_A          172 DGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNW  251 (361)
T ss_dssp             TSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTC
T ss_pred             CCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccc
Confidence            45444444432 2211                                                 11110000       


Q ss_pred             CCCcceEEEEcCCCcEEEEecC-----------CCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEE
Q 036585          217 SRNSTLEASFSPEGMFVISGSG-----------DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSF  284 (304)
Q Consensus       217 ~~~~i~~~~~s~~~~~l~~~~~-----------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~i  284 (304)
                      .......++|+|+++.++++..           .+.|.+||+.+++.+..+..+.  +.+++|+|||++|++++.+ +.+
T Consensus       252 ~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v  329 (361)
T 2oiz_A          252 VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNV  329 (361)
T ss_dssp             EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEE
T ss_pred             ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEE
Confidence            0001112689999888777542           3479999999999999998776  9999999999999888767 999


Q ss_pred             eccCCc
Q 036585          285 WIPDLS  290 (304)
Q Consensus       285 w~~~~~  290 (304)
                      |+....
T Consensus       330 ~D~~t~  335 (361)
T 2oiz_A          330 YDISQP  335 (361)
T ss_dssp             EECSSS
T ss_pred             EECCCC
Confidence            998766

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.72  E-value=4.2e-14  Score=111.10  Aligned_cols=222  Identities=10%  Similarity=0.049  Sum_probs=148.4

Q ss_pred             eeEeecccCc-EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           19 EILQSMEVGI-YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        19 ~~i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      +...+.++|+ ++++...++.|..|+. +++ ...+..+...+..++++++++.+++...   ++.|.+|+.. ++....
T Consensus        48 egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~---~~~v~~~~~~-g~~~~~  121 (305)
T 3dr2_A           48 EGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHG---RRAITRSDAD-GQAHLL  121 (305)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETT---TTEEEEECTT-SCEEEE
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECC---CCEEEEECCC-CCEEEE
Confidence            4567888888 6667777889999997 444 3445555667899999999986655544   6789999986 543222


Q ss_pred             cccc----cccEEEEEEcCCCCEEEE----ccc-------------CCeEEEEeCCcceeeceEEEeccceeEecCCCeE
Q 036585           98 FKGH----HDRVVLLSLCSSKDCFIS----GSL-------------DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV  156 (304)
Q Consensus        98 ~~~~----~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (304)
                      ....    ...+..+++.|+|+++++    |..             .+.|..+|..+++.....  .             
T Consensus       122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~-------------  186 (305)
T 3dr2_A          122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D-------------  186 (305)
T ss_dssp             ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E-------------
T ss_pred             EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c-------------
Confidence            1111    124567999999998886    432             245777776555433221  0             


Q ss_pred             EEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC
Q 036585          157 FGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  230 (304)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  230 (304)
                                      ....+.++|+|+++.|+++...      +.|++|++..+..................++++++|
T Consensus       187 ----------------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G  250 (305)
T 3dr2_A          187 ----------------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGG  250 (305)
T ss_dssp             ----------------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTS
T ss_pred             ----------------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCC
Confidence                            0234679999999988877665      789999987654211111111123445678999999


Q ss_pred             cEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc
Q 036585          231 MFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       231 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      ++. +++.++ |.+|+. +++.+..+..+. .+.+++|+|+++.|+.++.+
T Consensus       251 ~lw-v~~~~g-v~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          251 WLW-SSSGTG-VCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             CEE-ECCSSE-EEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETT
T ss_pred             CEE-EecCCc-EEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC
Confidence            854 444454 999997 677777776554 58999999998877776665

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.71  E-value=2.8e-13  Score=105.93  Aligned_cols=258  Identities=9%  Similarity=0.048  Sum_probs=172.3

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcceee-eecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      ....+...++|+++++...++.|.+||.. ++... .+......+..+++.+++...++...   ++.|..+|.. ++..
T Consensus        21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~v~~~d~~-g~~~   95 (300)
T 2qc5_A           21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENG---ANKIGKLSKK-GGFT   95 (300)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT---TTEEEEECTT-SCEE
T ss_pred             CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecC---CCeEEEECCC-CCeE
Confidence            34557777889888887778899999987 55433 22233357889999999987776655   7889999987 5432


Q ss_pred             e-ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEe----ccceeEecCCCeEEEec--CCCeEEEE
Q 036585           96 R-YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ----GRPAAAYDDQGLVFGYE--KGPLDIFS  168 (304)
Q Consensus        96 ~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~  168 (304)
                      . .+......+.++++.++++++++...++.|..+|.. ++.. .+...    ....+.+++++.++...  .+.+..++
T Consensus        96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  173 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT  173 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence            2 222234578999999999888887778899999987 4433 22111    12245566666554333  22333332


Q ss_pred             e---------cCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585          169 V---------GGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD  239 (304)
Q Consensus       169 ~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  239 (304)
                      .         ......+..++++++|++.++....+.|.+||. +++... +... .....+.+++++++|++.++...+
T Consensus       174 ~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~-~~~~~~~~i~~d~~g~l~v~~~~~  250 (300)
T 2qc5_A          174 NTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDIP-TPNARPHAITAGKNSEIWFTEWGA  250 (300)
T ss_dssp             TTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS-STTCCEEEEEECSTTCEEEEETTT
T ss_pred             CCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EECC-CCCCCceEEEECCCCCEEEeccCC
Confidence            2         223345788999999987766666788999998 555433 2221 234567899999999877777677


Q ss_pred             CcEEEEecCCCceee-eeeccCCCCceEEeCCCCcEEEEecCceEEecc
Q 036585          240 GSVHAWSVRSGKEVA-SWMSFDTEPPVIKWAPGSLMFVTGSSELSFWIP  287 (304)
Q Consensus       240 g~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~  287 (304)
                      +.|..||. +++... .+......+.++++.++|++.++.. . .|+.+
T Consensus       251 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~  296 (300)
T 2qc5_A          251 NQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL  296 (300)
T ss_dssp             TEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred             CeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence            89999998 454322 2233456689999999998777665 5 44443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.71  E-value=7.8e-16  Score=122.95  Aligned_cols=172  Identities=9%  Similarity=0.034  Sum_probs=130.2

Q ss_pred             ceeEEEEccCCCeEEEEecCCCCCceEEEEccCce---------e-eeecccccccEEEEEEcCCCCEEEEcccCCeEEE
Q 036585           59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK---------Y-SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLL  128 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~---------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  128 (304)
                      +++.+++++....+++++.   + .+.+|++.+.+         . ......+.. |+.++|  ++++|+++ .++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~---~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASG---S-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEET---T-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCC---C-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence            6899999999999999985   5 66679876543         1 111223566 999999  88999998 8899999


Q ss_pred             EeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCcee
Q 036585          129 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  208 (304)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  208 (304)
                      ||+++........                             .+...+..+.+.+.  .+++++.||.|.+||+.+++..
T Consensus       111 ~dv~sl~~~~~~~-----------------------------~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~  159 (388)
T 1xip_A          111 LDLEELSEFRTVT-----------------------------SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK  159 (388)
T ss_dssp             EESSSTTCEEEEE-----------------------------ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE
T ss_pred             EEchhhhccCccc-----------------------------eeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc
Confidence            9998766433332                             12234556665544  2888899999999999987764


Q ss_pred             EEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce--eeee------e---ccCCCCceEEeCCCCcEEEE
Q 036585          209 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE--VASW------M---SFDTEPPVIKWAPGSLMFVT  277 (304)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~l~s  277 (304)
                      .       ....|++++|||+|  ++.|..||.+++|+...++.  ..++      .   +|...|.+|.|.+++.++++
T Consensus       160 ~-------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          160 Q-------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             E-------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             c-------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            3       23579999999999  67788899999999877664  4445      2   36788999999999999887


Q ss_pred             e
Q 036585          278 G  278 (304)
Q Consensus       278 ~  278 (304)
                      -
T Consensus       231 y  231 (388)
T 1xip_A          231 F  231 (388)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.71  E-value=5.5e-15  Score=114.04  Aligned_cols=184  Identities=8%  Similarity=0.037  Sum_probs=143.7

Q ss_pred             CCCeEEEEecCCCCCceEEEEccCceeeeeccccc-ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc
Q 036585           68 HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH-DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP  146 (304)
Q Consensus        68 ~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  146 (304)
                      .++.|++++.   ++.|.+||.++++.+..+..+. ..+.++.+.|+|+++++  .++.|+.||. +++.+..+...   
T Consensus         4 ~~~~lv~~~~---~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~---   74 (276)
T 3no2_A            4 PQHLLVGGSG---WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAP---   74 (276)
T ss_dssp             CCEEEEECTT---CSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECC---
T ss_pred             CCcEEEeeCC---CCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCC---
Confidence            4567777776   9999999999999998888665 46889999999998883  4678999998 77776665521   


Q ss_pred             eeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCCceeEEEEeCCC---CCCcce
Q 036585          147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPV---SRNSTL  222 (304)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~---~~~~i~  222 (304)
                                               ....+.++.+.|+|+++++.+. ++.+..+|. +++.+.++.....   +.....
T Consensus        75 -------------------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~  128 (276)
T 3no2_A           75 -------------------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFR  128 (276)
T ss_dssp             -------------------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCS
T ss_pred             -------------------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccccccc
Confidence                                     1134667889999999999887 788888885 7888887764321   112345


Q ss_pred             EEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          223 EASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       223 ~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      .+++.++|+++++...++.|..||.+ ++.+.++... ..+.++...++++++++++.+  +..++.+
T Consensus       129 ~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          129 QINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             CCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             CceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence            56789999999999999999999987 9998888654 456778889999999888776  6666665

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.70  E-value=1.7e-15  Score=121.08  Aligned_cols=174  Identities=16%  Similarity=0.162  Sum_probs=133.1

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcc---------e-eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAAT---------C-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~---------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ...++.++...++++|+.++ +++|++++.+         . ......+.. |+.++|  +++.|+++ .   ++.|++|
T Consensus        40 ~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~---~~~l~v~  111 (388)
T 1xip_A           40 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-T---RNALYSL  111 (388)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-E---SSEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-c---CCcEEEE
Confidence            45677888888999999985 7779976543         1 111223455 999999  99999998 5   8999999


Q ss_pred             EccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585           88 SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF  167 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (304)
                      |+.+.........|..++.++.+.+..  +++++.||.+.+||+.++..... .                          
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~~-~--------------------------  162 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQL-A--------------------------  162 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEEE-E--------------------------
T ss_pred             EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccccc-c--------------------------
Confidence            998766555566677788888877543  88889999999999987765321 1                          


Q ss_pred             EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce--eEEEEeC------CCCCCcceEEEEcCCCcEEEEe
Q 036585          168 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVK------PVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       168 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~------~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                            ..|++++|||+|  +++|..||++++|+...++.  ..++..+      ..+...|.+++|.+++.++++-
T Consensus       163 ------~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          163 ------QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             ------ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ------CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence                  368999999999  67899999999999887775  4455321      1356889999999999998863

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.69  E-value=9.4e-15  Score=128.47  Aligned_cols=235  Identities=13%  Similarity=0.097  Sum_probs=147.5

Q ss_pred             eecccCcEEEEeeCCCe---EEEEecC-----Ccceeeee------cccccceeEEEEccCCCeEEEEecCCCC--CceE
Q 036585           22 QSMEVGIYLVTASDDES---IRLYDVT-----AATCLKTI------NSKKYGVDLVCFTSHPTTVIYSSKNGWD--ESLR   85 (304)
Q Consensus        22 ~~~~~~~~l~~~~~d~~---i~vw~~~-----~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~~~~d--~~i~   85 (304)
                      ...++|++++....++.   -.+|...     .++....+      .+|...+..++|||||++|+.+...+.+  ..|+
T Consensus       113 ~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~  192 (741)
T 1yr2_A          113 LPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK  192 (741)
T ss_dssp             CCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred             CCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence            33488998887765543   4555543     33322211      1233468899999999999988752111  4699


Q ss_pred             EEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCe--------------EEEEeCCcceeeceEEEeccceeEec
Q 036585           86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRT--------------VLLWDQRAEKCQGLLRVQGRPAAAYD  151 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~  151 (304)
                      +||+.+++.+... .+...+..++|+|| +.|+.++.++.              |++|++.++.....+.          
T Consensus       193 v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv----------  260 (741)
T 1yr2_A          193 FVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV----------  260 (741)
T ss_dssp             EEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEE----------
T ss_pred             EEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEE----------
Confidence            9999999875431 12222357899999 88888776553              7888876654322211          


Q ss_pred             CCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCC-----eEEEEEcCCC--ceeEEEEeCCCCCCcceEE
Q 036585          152 DQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRG--TLLSTYNVKPVSRNSTLEA  224 (304)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~--~~~~~~~~~~~~~~~i~~~  224 (304)
                                     +....+...+..+.|+|||++|+..+.++     .|++||+.++  +....+.   .+.......
T Consensus       261 ---------------~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~  322 (741)
T 1yr2_A          261 ---------------FATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---PDLKAQWDF  322 (741)
T ss_dssp             ---------------ECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---CSSSSCEEE
T ss_pred             ---------------eccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---CCCCceEEE
Confidence                           11112233467899999999988877544     8999999877  3134444   233344444


Q ss_pred             EEcCCCcEEEEecC----CCcEEEEecCCCc-eeee-eeccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          225 SFSPEGMFVISGSG----DGSVHAWSVRSGK-EVAS-WMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       225 ~~s~~~~~l~~~~~----dg~i~v~d~~~~~-~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                       ++|+|+.|+..+.    ++.|.+||+.++. .... +..+...+..+.|+ ++.++++...+  .+||.++
T Consensus       323 -~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          323 -VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             -EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             -EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence             3588888877764    3459999998752 3333 34444556677887 56677777766  5666554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.68  E-value=1.6e-13  Score=108.82  Aligned_cols=221  Identities=14%  Similarity=0.073  Sum_probs=147.4

Q ss_pred             eeEeeccc-CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           19 EILQSMEV-GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        19 ~~i~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      +...+.++ +.++++...++.|..||..+++.. .+. ....+.+++++++++.+++. .   + .|.+||..+++....
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~---~-gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D---D-GLFLRDTATGVLTLH  124 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T---T-EEEEEETTTCCEEEE
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C---C-CEEEEECCCCcEEEE
Confidence            45677786 556667767889999999876543 232 23578999999999876654 3   4 499999988764332


Q ss_pred             ccc----ccccEEEEEEcCCCCEEEEccc------CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585           98 FKG----HHDRVVLLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF  167 (304)
Q Consensus        98 ~~~----~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (304)
                      ...    ....+..+.++|+|+++++...      .+.|..++  +++......                          
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--------------------------  176 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--------------------------  176 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--------------------------
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--------------------------
Confidence            211    1246889999999987665432      24455555  333221111                          


Q ss_pred             EecCCCCCceEEEEecCCcEEEEe-eCCCeEEEEEcC--CC-cee--EEEEeCCCCCCcceEEEEcCCCcEEEEecCCCc
Q 036585          168 SVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSF--RG-TLL--STYNVKPVSRNSTLEASFSPEGMFVISGSGDGS  241 (304)
Q Consensus       168 ~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~--~~-~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  241 (304)
                          .......++|+|+++.++++ +.++.|.+||+.  ++ +..  ..+............++++++|++.++...++.
T Consensus       177 ----~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~  252 (326)
T 2ghs_A          177 ----DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA  252 (326)
T ss_dssp             ----EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE
T ss_pred             ----CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE
Confidence                11234679999999877655 457899999986  55 321  222211123455678999999987777666788


Q ss_pred             EEEEecCCCceeeeeeccCCCCceEEeC-CCCcEEEEec
Q 036585          242 VHAWSVRSGKEVASWMSFDTEPPVIKWA-PGSLMFVTGS  279 (304)
Q Consensus       242 i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~  279 (304)
                      |.+||. +++.+..+..+...+++++|+ |++..|+.++
T Consensus       253 v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          253 VDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             EEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            999998 677777777666679999998 8877664443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.68  E-value=1.7e-14  Score=114.95  Aligned_cols=233  Identities=9%  Similarity=-0.003  Sum_probs=157.0

Q ss_pred             cEEEEeeCCC----eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecC-------CCCCceEEEEccCceeee
Q 036585           28 IYLVTASDDE----SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        28 ~~l~~~~~d~----~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------~~d~~i~vwd~~~~~~~~   96 (304)
                      +.+++...++    +|.++|..+++.+.++.....+  .+.++|+++.++++...       ..++.|.+||+.+++.+.
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~  110 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence            3444444455    7889999999999998866656  79999999999998620       016899999999999888


Q ss_pred             ecccc-------cccEEEEEEcCCCCEEEEccc--CCeEEE--EeCCcceeeceEEEec---------cceeEecCCCe-
Q 036585           97 YFKGH-------HDRVVLLSLCSSKDCFISGSL--DRTVLL--WDQRAEKCQGLLRVQG---------RPAAAYDDQGL-  155 (304)
Q Consensus        97 ~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~---------~~~~~~~~~~~-  155 (304)
                      .+...       ......+.++|||++++++..  +..+.+  +|+.+   ...+...+         ...+...+++. 
T Consensus       111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~  187 (368)
T 1mda_H          111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSC
T ss_pred             EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCE
Confidence            87533       123467899999998888764  457888  89876   22221110         01111111111 


Q ss_pred             --------------------------------------EEEecCCCeEEEEecCCC---------------------CCc
Q 036585          156 --------------------------------------VFGYEKGPLDIFSVGGDI---------------------SDA  176 (304)
Q Consensus       156 --------------------------------------~~~~~~~~~~~~~~~~~~---------------------~~v  176 (304)
                                                            ++... +.+.+.+.....                     ...
T Consensus       188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~  266 (368)
T 1mda_H          188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF  266 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred             EEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcc
Confidence                                                  11111 334444442211                     111


Q ss_pred             eEEEEecCCcEEEEeeC-C--------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcE-EEEec-CCCcEEEE
Q 036585          177 NVVKFSNDGRLMLLTTM-E--------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF-VISGS-GDGSVHAW  245 (304)
Q Consensus       177 ~~~~~~~~~~~l~~~~~-d--------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~-~dg~i~v~  245 (304)
                      ..++++|+++.++++.. .        +.+.++|+.+.+.+.++..    ......++|+|||++ +++.. .++.|.++
T Consensus       267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVI  342 (368)
T 1mda_H          267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIY  342 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEE
Confidence            22789999998887643 2        3567999999999888873    235788999999984 55555 58999999


Q ss_pred             ecCCCceeeeeeccCCCCceEEeCCC
Q 036585          246 SVRSGKEVASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       246 d~~~~~~~~~~~~~~~~i~~~~~~~~  271 (304)
                      |+.+++.+.++.... ....+++.+.
T Consensus       343 D~~t~kvv~~I~vg~-~P~~i~~~~~  367 (368)
T 1mda_H          343 DAASDQDQSSVELDK-GPESLSVQNE  367 (368)
T ss_dssp             ESSSCEEEEECCCCS-CCCEEECCCC
T ss_pred             ECCCCcEEEEEECCC-CCCEEEeecC
Confidence            999999998887553 4567776553

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.68  E-value=1.8e-14  Score=116.62  Aligned_cols=228  Identities=12%  Similarity=0.161  Sum_probs=154.8

Q ss_pred             eEeecccCcEEEEee----------CCCeEEEEecCCcceeeeeccc-------ccceeEEEEccCCCeEEEEecCCCCC
Q 036585           20 ILQSMEVGIYLVTAS----------DDESIRLYDVTAATCLKTINSK-------KYGVDLVCFTSHPTTVIYSSKNGWDE   82 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~~~~d~   82 (304)
                      -+.++|||++++++.          .++.|.++|..+++.+.++...       ......+.|+||+++++++... .++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~-~~~  200 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS-PAP  200 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS-SSC
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC-CCC
Confidence            688999999888876          3678999999999988877532       1345678999999999998741 157


Q ss_pred             ceEEEEccCceeeeecccccccEEEEEEcCCC-CEEEEcccCCeEEEEeCCcceeece----EEEeccc---eeEecCCC
Q 036585           83 SLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSK-DCFISGSLDRTVLLWDQRAEKCQGL----LRVQGRP---AAAYDDQG  154 (304)
Q Consensus        83 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~---~~~~~~~~  154 (304)
                      .|.+.|+.+++.+..+.-. +.   ....|++ ..+++.+.||.+.+.++.+++....    +.....+   ...+.+++
T Consensus       201 ~VsVID~~t~kvv~~I~v~-g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg  276 (426)
T 3c75_H          201 AVGVVDLEGKTFDRMLDVP-DC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS  276 (426)
T ss_dssp             EEEEEETTTTEEEEEEECC-SE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred             eEEEEECCCCeEEEEEEcC-Cc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence            8999999999888776531 11   2223322 4555566677777667644443311    1111111   12223332


Q ss_pred             --eEEEecCCCeEEEEecCCC---------------------CCceEEEEecCCcEEEEeeC----------CCeEEEEE
Q 036585          155 --LVFGYEKGPLDIFSVGGDI---------------------SDANVVKFSNDGRLMLLTTM----------EGHIHVLD  201 (304)
Q Consensus       155 --~~~~~~~~~~~~~~~~~~~---------------------~~v~~~~~~~~~~~l~~~~~----------dg~i~~~d  201 (304)
                        .++....+.+.+.+..+..                     .....++++|+++.+++...          ++.|.++|
T Consensus       277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID  356 (426)
T 3c75_H          277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN  356 (426)
T ss_dssp             CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence              3333334445555543211                     12233789999888777643          35799999


Q ss_pred             cCCCceeEEEEeCCCCCCcceEEEEcCCCc-EEEEec-CCCcEEEEecCCCceeeee
Q 036585          202 SFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVISGS-GDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~v~d~~~~~~~~~~  256 (304)
                      +.+.+.+.++..    ......+.|+||++ ++++.. .++.|.++|+.+++.+.++
T Consensus       357 ~~T~kvv~~I~v----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          357 AETGERINKIEL----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCCeEEEEEEC----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            999999999873    23577899999999 888887 5899999999999999887

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=1.3e-14  Score=111.90  Aligned_cols=199  Identities=9%  Similarity=0.012  Sum_probs=139.1

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ...+.+.++|+++++.. ++.|.+||..+.............+..+++.++++.+++...   ++.|.+|+..+......
T Consensus        69 p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~---~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           69 PQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRG---NNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             CCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGG---GTEEEEECTTCCSCEEC
T ss_pred             cceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECC---CCEEEEEECCCceeEee
Confidence            34567778888666665 889999998765433222223356889999999986666665   78999997665443322


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCce
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN  177 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                      .......+.++++.++++++++...++.|.+||...........                             .....+.
T Consensus       145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-----------------------------~~~~~p~  195 (270)
T 1rwi_B          145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-----------------------------TDITAPW  195 (270)
T ss_dssp             CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC-----------------------------SSCCSEE
T ss_pred             ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc-----------------------------cCCCCce
Confidence            22233467889999999877777778899999987654321100                             1224567


Q ss_pred             EEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585          178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       178 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  252 (304)
                      .++++++|.++++...++.|.+||........ ..  ......+.+++++|+|+++++...++.|+++++...+.
T Consensus       196 ~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~--~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          196 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP--FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC--CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             EEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec--cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            89999999777777778899999986654322 11  12335688999999999888888899999999876543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.66  E-value=3.1e-14  Score=124.17  Aligned_cols=238  Identities=15%  Similarity=0.102  Sum_probs=147.4

Q ss_pred             eeEeecccCcEEEEe-----eCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecC----------CCCCc
Q 036585           19 EILQSMEVGIYLVTA-----SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN----------GWDES   83 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----------~~d~~   83 (304)
                      ..+.++|||++||.+     +....|++||+.+++.+.. ..+......++|+ |++.|+.++..          +....
T Consensus       132 ~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~  209 (693)
T 3iuj_A          132 DQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK  209 (693)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred             EEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence            346899999998843     3335799999999986543 1111123578999 99999999872          11134


Q ss_pred             eEEEEccCce----eeeeccc-ccccEEEEEEcCCCCEEEEcc----cCCeEEEEeCCccee-eceEEEeccceeEecCC
Q 036585           84 LRLLSLHDNK----YSRYFKG-HHDRVVLLSLCSSKDCFISGS----LDRTVLLWDQRAEKC-QGLLRVQGRPAAAYDDQ  153 (304)
Q Consensus        84 i~vwd~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~  153 (304)
                      |++|++.++.    .+..... |...+..+.|+||+++|+...    ....|+++|+.++.. ...+.            
T Consensus       210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~------------  277 (693)
T 3iuj_A          210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ------------  277 (693)
T ss_dssp             EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE------------
T ss_pred             EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe------------
Confidence            9999997754    2333333 445578899999999875533    235899999876532 11221            


Q ss_pred             CeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC----CCeEEEEEcCCCce--eEEEEeCCCCCCcceEEEEc
Q 036585          154 GLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGTL--LSTYNVKPVSRNSTLEASFS  227 (304)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~--~~~~~~~~~~~~~i~~~~~s  227 (304)
                                       .+....... ++++|..|+..+.    .+.|..+|+.++..  ...+.   .+...+.  .|+
T Consensus       278 -----------------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~--~~s  334 (693)
T 3iuj_A          278 -----------------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---PERQQVL--TVH  334 (693)
T ss_dssp             -----------------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCE--EEE
T ss_pred             -----------------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---cCCCCEE--EEE
Confidence                             122233333 6666665555443    36899999987654  23444   2344444  889


Q ss_pred             CCCcEEEEecCCC---cEEEEecCCCceeeeee-ccCCCCceEEeCCCCcEEEEecCc------eEEeccCCccccc
Q 036585          228 PEGMFVISGSGDG---SVHAWSVRSGKEVASWM-SFDTEPPVIKWAPGSLMFVTGSSE------LSFWIPDLSKLGA  294 (304)
Q Consensus       228 ~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d------~~iw~~~~~~~~~  294 (304)
                      +++++|+....++   .|++||+..+ ....+. ...+.+..+.++|++..++....+      +..|+++..+...
T Consensus       335 ~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~  410 (693)
T 3iuj_A          335 SGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISL  410 (693)
T ss_dssp             EETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEE
T ss_pred             EECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEE
Confidence            9998887765443   6899998744 344443 234456677788887655443322      4455554444333

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.64  E-value=1.5e-16  Score=128.09  Aligned_cols=204  Identities=16%  Similarity=0.032  Sum_probs=122.1

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccc-c
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHD-R  104 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~  104 (304)
                      ++..+++++.|+.|+.||..+++.+.++..  ..+.+..+..++..+++++.   |+.|+.||..+++.+..+..+.. .
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~---dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPN---DGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTT---TCCEEEC-----CCSEECSCCHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCC---CCEEEEEECCCCceeeeeeccCccc
Confidence            578999999999999999999999888776  45666666677777777766   99999999999887665543322 1


Q ss_pred             EE-EEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec
Q 036585          105 VV-LLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN  183 (304)
Q Consensus       105 v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (304)
                      +. +..+. .+..+++++.++.++.||.++++....+....                                 ...++|
T Consensus        83 ~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---------------------------------~~~~~p  128 (369)
T 2hz6_A           83 VQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---------------------------------ADSLSP  128 (369)
T ss_dssp             HTTCSCC------CCCCEEEEEEEEECCC---------------------------------------------------
T ss_pred             cccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---------------------------------cccccc
Confidence            11 00111 34578888899999999999998876654221                                 123456


Q ss_pred             CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC---cEEEEecCCCcEEEEecCCCceeeeeeccC
Q 036585          184 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG---MFVISGSGDGSVHAWSVRSGKEVASWMSFD  260 (304)
Q Consensus       184 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  260 (304)
                      ++..+++++.++.|+.||.++++.+..+....     .....++++.   ..+++++.||.|+.||.++++.+.+... .
T Consensus       129 ~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~  202 (369)
T 2hz6_A          129 STSLLYLGRTEYTITMYDTKTRELRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-A  202 (369)
T ss_dssp             ----EEEEEEEEEEECCCSSSSSCCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-S
T ss_pred             cCCEEEEEecCCEEEEEECCCCCEEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-C
Confidence            78889999999999999999999877765211     1122334432   4577788899999999999998777653 3


Q ss_pred             CCC-ceEEeCCCCcE
Q 036585          261 TEP-PVIKWAPGSLM  274 (304)
Q Consensus       261 ~~i-~~~~~~~~~~~  274 (304)
                      .++ ....+++++..
T Consensus       203 ~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          203 SPVVAFYVWQREGLR  217 (369)
T ss_dssp             SCEEEEEECTTSSCE
T ss_pred             CceEEEEEecCCceE
Confidence            444 33456667643

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.60  E-value=7e-12  Score=97.85  Aligned_cols=223  Identities=10%  Similarity=0.125  Sum_probs=152.0

Q ss_pred             cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee-cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcc
Q 036585           56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY-FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAE  134 (304)
Q Consensus        56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  134 (304)
                      +...+.++++.+++...++...   ++.|.+||.. ++.... ...+...+.++++.+++.++++...++.|..||.. +
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~---~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHK---ANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETT---TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cCCCccceEECCCCCEEEEecC---CCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            4457899999999987776655   7899999988 543321 22345678999999999988887778899999976 3


Q ss_pred             eeeceEEEe----ccceeEecCCCeEEEec--CCCeEEEEe---------cCCCCCceEEEEecCCcEEEEeeCCCeEEE
Q 036585          135 KCQGLLRVQ----GRPAAAYDDQGLVFGYE--KGPLDIFSV---------GGDISDANVVKFSNDGRLMLLTTMEGHIHV  199 (304)
Q Consensus       135 ~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  199 (304)
                      +. ..+...    ....+.+++++.++...  .+.+..++.         ......+..++++++|+.+++...++.|..
T Consensus        88 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  166 (299)
T 2z2n_A           88 II-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR  166 (299)
T ss_dssp             CE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             cE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence            22 222211    22245566666555433  233443332         223456788999999987777767789999


Q ss_pred             EEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeee-eeccCCCCceEEeCCCCcEEEEe
Q 036585          200 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS-WMSFDTEPPVIKWAPGSLMFVTG  278 (304)
Q Consensus       200 ~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~  278 (304)
                      ||. +++... +... .....+..+++++++++.++...++.|.+||. +++.... ...+...+.+++++++|+++++.
T Consensus       167 ~~~-~g~~~~-~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  242 (299)
T 2z2n_A          167 ITE-SGDITE-FKIP-TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTE  242 (299)
T ss_dssp             ECT-TCCEEE-EECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             EcC-CCcEEE-eeCC-CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEec
Confidence            998 665543 3221 23456788999999997777777889999998 6654322 23345678899999999877765


Q ss_pred             cC-c-eEEeccC
Q 036585          279 SS-E-LSFWIPD  288 (304)
Q Consensus       279 ~~-d-~~iw~~~  288 (304)
                      .. + +..|+.+
T Consensus       243 ~~~~~i~~~d~~  254 (299)
T 2z2n_A          243 WGANKIGRLTSN  254 (299)
T ss_dssp             TTTTEEEEEETT
T ss_pred             cCCceEEEECCC
Confidence            34 3 7788774

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.60  E-value=1.3e-12  Score=104.94  Aligned_cols=227  Identities=11%  Similarity=0.053  Sum_probs=151.5

Q ss_pred             ccCcEEEE-eeCCCeEEEEecCCc----ceeeeec-------ccccceeEEEEccCCCeEEEEecC---CCCCceEEEEc
Q 036585           25 EVGIYLVT-ASDDESIRLYDVTAA----TCLKTIN-------SKKYGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSL   89 (304)
Q Consensus        25 ~~~~~l~~-~~~d~~i~vw~~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~~---~~d~~i~vwd~   89 (304)
                      +++++|+. +..++.|.|+|+.+.    +...++.       ........+...|++ .++++..+   +..+.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            55666554 556788999998755    5566663       111246678889999 66655441   11278999999


Q ss_pred             cCceeeeecccccc---cEEEEEEcCCCCEEEEcc-------------------cCCeEEEEeCCcceeeceEEEeccce
Q 036585           90 HDNKYSRYFKGHHD---RVVLLSLCSSKDCFISGS-------------------LDRTVLLWDQRAEKCQGLLRVQGRPA  147 (304)
Q Consensus        90 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~~  147 (304)
                      .+.+.+..+.....   .-+.+.|+|+++.+++..                   ...+|.+||+.+++....+.....  
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~--  249 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE--  249 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT--
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC--
Confidence            99998888763222   234578899999988884                   368999999998876666553210  


Q ss_pred             eEecCCCeEEEecCCCeEEEEecCCCCCceEEEE--ecCCcEEEEee------CCCeEEEEEcCCCceeEE--EEeCCC-
Q 036585          148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF--SNDGRLMLLTT------MEGHIHVLDSFRGTLLST--YNVKPV-  216 (304)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~--~~~~~~-  216 (304)
                                               ......+.|  +|+++++++++      .+++|.+|....++....  +..... 
T Consensus       250 -------------------------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~  304 (462)
T 2ece_A          250 -------------------------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEP  304 (462)
T ss_dssp             -------------------------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEE
T ss_pred             -------------------------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcc
Confidence                                     012233444  99999888877      466888877655432221  111110 


Q ss_pred             --C------------CCcceEEEEcCCCcEEEEecC-CCcEEEEecCC---CceeeeeeccC--------------CCCc
Q 036585          217 --S------------RNSTLEASFSPEGMFVISGSG-DGSVHAWSVRS---GKEVASWMSFD--------------TEPP  264 (304)
Q Consensus       217 --~------------~~~i~~~~~s~~~~~l~~~~~-dg~i~v~d~~~---~~~~~~~~~~~--------------~~i~  264 (304)
                        .            ......+.+||||++|+++.. .+.|.+||+.+   .+.+..+....              +...
T Consensus       305 v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr  384 (462)
T 2ece_A          305 LEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQ  384 (462)
T ss_dssp             CCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred             ccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCC
Confidence              0            245678999999999988864 57899999863   24444443221              1368


Q ss_pred             eEEeCCCCcEEEEec
Q 036585          265 VIKWAPGSLMFVTGS  279 (304)
Q Consensus       265 ~~~~~~~~~~l~s~~  279 (304)
                      .++++|||++|+++.
T Consensus       385 ~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          385 MLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEECTTSSEEEEEC
T ss_pred             EEEEcCCCCEEEEEc
Confidence            899999999999888

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.58  E-value=4.7e-13  Score=106.87  Aligned_cols=258  Identities=9%  Similarity=-0.004  Sum_probs=155.2

Q ss_pred             ceeeEeecccCcEEEEee--CCCeEEEEecCCcceeeee-------cccccceeEEEEccCCCeEEEEecC--CCCCceE
Q 036585           17 SEEILQSMEVGIYLVTAS--DDESIRLYDVTAATCLKTI-------NSKKYGVDLVCFTSHPTTVIYSSKN--GWDESLR   85 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~~--~~d~~i~   85 (304)
                      ....+.+.++|+++++..  .++.++||.+.+++.. .+       ..+...+..++++++++.+++-...  ..+..|.
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            456688889999988864  2343566665555433 22       2244678999999998755544310  0036899


Q ss_pred             EEEccCceeeeeccc------ccccEEEEEEcCCCCEE-EEcc---cCCeEEEEeCCcceeeceEEEeccc---eeEecC
Q 036585           86 LLSLHDNKYSRYFKG------HHDRVVLLSLCSSKDCF-ISGS---LDRTVLLWDQRAEKCQGLLRVQGRP---AAAYDD  152 (304)
Q Consensus        86 vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l-~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~  152 (304)
                      +||+.+++.+..+..      +...+..+++.+++..+ ++-.   .++.|.+||+.+++....+..+...   ...+..
T Consensus        97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~  176 (343)
T 2qe8_A           97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI  176 (343)
T ss_dssp             EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred             EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence            999998886655542      22356789999865444 4444   5789999999877654433110000   011111


Q ss_pred             CCeEE--EecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCC-eEEEEEcC---CCc-----eeEEEEeCCCCCCcc
Q 036585          153 QGLVF--GYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-HIHVLDSF---RGT-----LLSTYNVKPVSRNST  221 (304)
Q Consensus       153 ~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~~d~~---~~~-----~~~~~~~~~~~~~~i  221 (304)
                      ++..+  ...++.+..|.     ..+..++|+|+|+.|+++...+ .+..++..   .+.     ....+... ++....
T Consensus       177 ~g~~~~~~~~~g~~~~~~-----~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~p  250 (343)
T 2qe8_A          177 DGVPVQIGQPDGTVIRPH-----LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-SEKPIC  250 (343)
T ss_dssp             TTEECBEECTTSCEECCC-----CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSC
T ss_pred             CCEEEEeccCCCceecee-----cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCC
Confidence            22211  12222222221     2467899999999888887666 56555532   111     00000100 122345


Q ss_pred             eEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeec-cCCCCceEEeCCCCcEEEEecCc
Q 036585          222 LEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS-FDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       222 ~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      ..++++++|+++++...++.|.+||.++++....... +...+.+++|.+++.++++.+..
T Consensus       251 dgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          251 DGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             SCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             ceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence            6789999999998888899999999856654322221 24567899999999877776644

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.56  E-value=5.3e-12  Score=102.95  Aligned_cols=206  Identities=12%  Similarity=0.063  Sum_probs=133.9

Q ss_pred             ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCC--eEEEEeCCccee
Q 036585           59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDR--TVLLWDQRAEKC  136 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~  136 (304)
                      ....++|+++++.+++...   ++.|++||..+++........ .... ++|+|+++.|+++..++  .|.+++...+..
T Consensus       132 ~P~~la~d~~g~lyv~d~~---~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRD---DPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CEEEEEECSTTEEEEEETT---TTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CceEEEEeCCCCEEEEecC---CCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            5779999999986666554   789999999887765544432 2333 89999999888887765  788888765443


Q ss_pred             eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEe--C
Q 036585          137 QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV--K  214 (304)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~  214 (304)
                      ...+....                         ......+..++++|++..|+++..++.|+.||..++... .+..  .
T Consensus       207 ~~~~g~~~-------------------------~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~  260 (409)
T 3hrp_A          207 PTRIGQLG-------------------------STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLEL  260 (409)
T ss_dssp             EEEEEECC-------------------------TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCC
T ss_pred             eEEeeecc-------------------------chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccc
Confidence            22221000                         012345678999995545666777889999999877532 2211  1


Q ss_pred             CCCCCcc--eEEEEcCC-CcEEEEecCCCcEEEEecCCCceeeeeeccC---------------CCCceEEeCCCCcEEE
Q 036585          215 PVSRNST--LEASFSPE-GMFVISGSGDGSVHAWSVRSGKEVASWMSFD---------------TEPPVIKWAPGSLMFV  276 (304)
Q Consensus       215 ~~~~~~i--~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~l~  276 (304)
                      ......-  ..++|+|+ +.++++-..++.|+.|+... + +..+.++.               .....++++|+|++++
T Consensus       261 ~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyv  338 (409)
T 3hrp_A          261 SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYI  338 (409)
T ss_dssp             CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEE
T ss_pred             cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEE
Confidence            1111112  28999995 66666666788999999753 3 33333322               3468899999999666


Q ss_pred             Eec-Cc--eEEeccCCcccccccc
Q 036585          277 TGS-SE--LSFWIPDLSKLGAYVG  297 (304)
Q Consensus       277 s~~-~d--~~iw~~~~~~~~~~~~  297 (304)
                      +-. .+  |+.|+.....+..+.+
T Consensus       339 ad~~~~~~I~~~~~~~G~v~~~~g  362 (409)
T 3hrp_A          339 VDGFKGYCLRKLDILDGYVSTVAG  362 (409)
T ss_dssp             EETTTTCEEEEEETTTTEEEEEEE
T ss_pred             EeCCCCCEEEEEECCCCEEEEEeC
Confidence            655 44  7777754445554443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.53  E-value=5.9e-12  Score=98.81  Aligned_cols=212  Identities=12%  Similarity=0.054  Sum_probs=139.4

Q ss_pred             eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEE
Q 036585           49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLL  128 (304)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  128 (304)
                      .+..+...........|+|+++.|+.....  ++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~--~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLV--GRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITR  111 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETT--TTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECC--CCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence            344444444567789999999955544432  889999998 444 3445556677899999999997777666688999


Q ss_pred             EeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEE----eeC-----------
Q 036585          129 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLL----TTM-----------  193 (304)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~-----------  193 (304)
                      |+.. ++..........                         .....++.++++|+|+++++    |..           
T Consensus       112 ~~~~-g~~~~~~~~~~~-------------------------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~  165 (305)
T 3dr2_A          112 SDAD-GQAHLLVGRYAG-------------------------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPE  165 (305)
T ss_dssp             ECTT-SCEEEEECEETT-------------------------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCS
T ss_pred             ECCC-CCEEEEEeccCC-------------------------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccc
Confidence            9975 432211110000                         01134677999999997775    332           


Q ss_pred             --CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC------CcEEEEecCCCcee--eee-eccCCC
Q 036585          194 --EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD------GSVHAWSVRSGKEV--ASW-MSFDTE  262 (304)
Q Consensus       194 --dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~v~d~~~~~~~--~~~-~~~~~~  262 (304)
                        .+.|+.||..+++......     ......++|+||++.|+.+...      +.|++|++......  ..+ ....+.
T Consensus       166 ~~~~~v~~~d~~~g~~~~~~~-----~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~  240 (305)
T 3dr2_A          166 LAHHSVYRLPPDGSPLQRMAD-----LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL  240 (305)
T ss_dssp             SSCEEEEEECSSSCCCEEEEE-----ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC
T ss_pred             cCCCeEEEEcCCCCcEEEEec-----CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC
Confidence              3568888876666543321     2345679999999988777654      68999998754311  111 112445


Q ss_pred             CceEEeCCCCcEEEEecCc-eEEeccCCccccccc
Q 036585          263 PPVIKWAPGSLMFVTGSSE-LSFWIPDLSKLGAYV  296 (304)
Q Consensus       263 i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~~~~~~  296 (304)
                      +..++++++|++.++. .+ +.+|+.+.+.+..+.
T Consensus       241 pdgi~~d~~G~lwv~~-~~gv~~~~~~g~~~~~~~  274 (305)
T 3dr2_A          241 PDGFCVDRGGWLWSSS-GTGVCVFDSDGQLLGHIP  274 (305)
T ss_dssp             CCSEEECTTSCEEECC-SSEEEEECTTSCEEEEEE
T ss_pred             CCeEEECCCCCEEEec-CCcEEEECCCCCEEEEEE
Confidence            6789999999966655 45 889988777665554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.53  E-value=5.5e-12  Score=99.30  Aligned_cols=196  Identities=11%  Similarity=0.119  Sum_probs=130.2

Q ss_pred             cceeEEEEccCCCeEEE-------EecCCCCCceEEEEccCceeeeecc----cccccEEEEEEcCC-CCEEEEcccCCe
Q 036585           58 YGVDLVCFTSHPTTVIY-------SSKNGWDESLRLLSLHDNKYSRYFK----GHHDRVVLLSLCSS-KDCFISGSLDRT  125 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~-------~~~~~~d~~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~dg~  125 (304)
                      ....+++|++++..+++       ...   ++.|.+||..+++......    ++...+.+++++++ ++++++.. ...
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~---~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~   93 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKP---AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLG   93 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEE---CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCC---CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCC
Confidence            45678999999977776       454   8899999988776533221    24567899999999 76555444 447


Q ss_pred             EEEEeCCcceeece-EEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC----------
Q 036585          126 VLLWDQRAEKCQGL-LRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME----------  194 (304)
Q Consensus       126 i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------  194 (304)
                      |.+||.. ++.... ......                         .....+..++++++|+++++...+          
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~-------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~  147 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEG-------------------------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTS-------------------------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred             EEEEeCC-CCEEEEEeccCCC-------------------------ccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence            8899987 543221 110000                         012357889999999877766554          


Q ss_pred             -----CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc----CCCcEEEEe-cCCCcEEEEecC-CCce-----eeeeec
Q 036585          195 -----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS----PEGMFVISG-SGDGSVHAWSVR-SGKE-----VASWMS  258 (304)
Q Consensus       195 -----g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~~-~~dg~i~v~d~~-~~~~-----~~~~~~  258 (304)
                           +.|..||.. ++......    .......++|+    |+++.|+.+ ..++.|.+||+. +++.     ...+..
T Consensus       148 ~~~~~~~l~~~~~~-g~~~~~~~----~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  222 (314)
T 1pjx_A          148 MQEKFGSIYCFTTD-GQMIQVDT----AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG  222 (314)
T ss_dssp             TSSSCEEEEEECTT-SCEEEEEE----EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             ccCCCCeEEEECCC-CCEEEecc----CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence                 578888865 55443332    23345788999    999766554 567899999986 4432     222333


Q ss_pred             cC-CCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          259 FD-TEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       259 ~~-~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      +. ..+..++++++|+++++...+  +.+|+.+
T Consensus       223 ~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          223 THEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence            33 557889999999888776444  8888887

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.53  E-value=2.5e-12  Score=106.82  Aligned_cols=257  Identities=11%  Similarity=0.057  Sum_probs=162.3

Q ss_pred             ccCcEEEEeeC-CCeEEEEecCCcceeeeeccc-ccceeEEEE-c-cCCCeEEEEecC---------------CCCCceE
Q 036585           25 EVGIYLVTASD-DESIRLYDVTAATCLKTINSK-KYGVDLVCF-T-SHPTTVIYSSKN---------------GWDESLR   85 (304)
Q Consensus        25 ~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~~~~---------------~~d~~i~   85 (304)
                      +||++++.... ++.|.+.|+.+.++...+.-. ...+..+++ + |+++++++++..               .+++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            47888877665 557999999999987755432 245788888 5 999999988521               1367899


Q ss_pred             EEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCC---------------eEEEEeCCcceeeceEEEeccceeEe
Q 036585           86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDR---------------TVLLWDQRAEKCQGLLRVQGRPAAAY  150 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~~~  150 (304)
                      +.|..+.+...++.-- +....++++|+|+++++.+.+.               .|.+.|.......  .. .+.... .
T Consensus       179 vID~~t~~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~--v~-~Gk~~~-i  253 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA--IA-AGDYQE-L  253 (595)
T ss_dssp             EEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH--HH-HTCSEE-E
T ss_pred             EEECCCCeEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe--cc-CCCeeE-E
Confidence            9999998877766521 2446678999999998887653               3555554322110  00 000000 0


Q ss_pred             cCCCe-EEEecC--CCeEEEEecCCCCCceEEEEecCCcEEEEee-CCCeEEEEEcCCCc------------eeEEEEeC
Q 036585          151 DDQGL-VFGYEK--GPLDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGT------------LLSTYNVK  214 (304)
Q Consensus       151 ~~~~~-~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~------------~~~~~~~~  214 (304)
                        ++. ++....  +...+..+.- .....++.++|||+++++++ .+.+|.++|+.+.+            ......  
T Consensus       254 --~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--  328 (595)
T 1fwx_A          254 --NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--  328 (595)
T ss_dssp             --TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--
T ss_pred             --CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--
Confidence              111 111111  1110111110 12456789999999887765 57899999998653            222222  


Q ss_pred             CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC----------CceeeeeeccCC-----CCceEEeCCCCcEEEEec
Q 036585          215 PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS----------GKEVASWMSFDT-----EPPVIKWAPGSLMFVTGS  279 (304)
Q Consensus       215 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~----------~~~~~~~~~~~~-----~i~~~~~~~~~~~l~s~~  279 (304)
                        .......++|+|+|...++.-.|+.|.+||+.+          .+.+.++..|-.     .-.++.++|||++|+++.
T Consensus       329 --vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          329 --LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             --CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             --CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence              345567799999994444556899999999976          455666654432     224456789999999876


Q ss_pred             C---c-e-----------EEeccCCcccc
Q 036585          280 S---E-L-----------SFWIPDLSKLG  293 (304)
Q Consensus       280 ~---d-~-----------~iw~~~~~~~~  293 (304)
                      .   | +           .+++++..+++
T Consensus       407 k~skdr~~~~gp~~~~~~ql~dis~~~m~  435 (595)
T 1fwx_A          407 KFSKDRFLNVGPLKPENDQLIDISGDKMV  435 (595)
T ss_dssp             SCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred             CCCccccccCCCCCCCcceEEEcCCCcEE
Confidence            4   3 4           88888766654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=3.1e-11  Score=94.29  Aligned_cols=193  Identities=12%  Similarity=0.078  Sum_probs=124.1

Q ss_pred             cceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecc----cccceeEEEEccCCCeEEEEecCCC------CCceE
Q 036585           16 LSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINS----KKYGVDLVCFTSHPTTVIYSSKNGW------DESLR   85 (304)
Q Consensus        16 ~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~------d~~i~   85 (304)
                      .....+.+.++|+++++.  ++.|.+||.++++.......    ....+..++++|+|+.+++......      ...-.
T Consensus        54 ~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~  131 (297)
T 3g4e_A           54 APVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGA  131 (297)
T ss_dssp             SCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred             CceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcE
Confidence            345567888999965543  46799999987765332221    1245788999999986665432100      12234


Q ss_pred             EEEccCceeeeecccccccEEEEEEcCCCCEEE-EcccCCeEEEEeC--CcceeeceEEEeccceeEecCCCeEEEecCC
Q 036585           86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFI-SGSLDRTVLLWDQ--RAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG  162 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (304)
                      +|.+........+..+......++|+|+++.++ +.+.++.|..||+  .++.......                     
T Consensus       132 l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~---------------------  190 (297)
T 3g4e_A          132 LYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRS---------------------  190 (297)
T ss_dssp             EEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEE---------------------
T ss_pred             EEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEE---------------------
Confidence            554443222222333445568899999998664 4556789999987  3443211000                     


Q ss_pred             CeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc-CCCcEEEEec
Q 036585          163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVISGS  237 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~  237 (304)
                         +..+.........++++++|++.++....+.|..||..+++.+..+.   .+...+++++|. |+++.|+.++
T Consensus       191 ---~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~---~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          191 ---VYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK---LPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             ---EEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE---CSSSBEEEEEEESGGGCEEEEEE
T ss_pred             ---EEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE---CCCCCceEEEEeCCCCCEEEEEc
Confidence               01111122456779999999877777778899999999899988887   345678999998 8887766554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.51  E-value=2e-10  Score=89.59  Aligned_cols=222  Identities=11%  Similarity=0.104  Sum_probs=149.4

Q ss_pred             ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee-ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcce
Q 036585           57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR-YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK  135 (304)
Q Consensus        57 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  135 (304)
                      ...+.++++.+++...++...   ++.|.+||.. ++... .+......+.++++.+++.++++...++.|..||.. ++
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~---~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHK---ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETT---TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCcceeeECCCCCEEEEcCC---CCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence            457889999999987776655   8899999988 54332 222334678999999999888877778899999987 44


Q ss_pred             eeceEEEe----ccceeEecCCCeEEEec--CCCeEEEE---------ecCCCCCceEEEEecCCcEEEEeeCCCeEEEE
Q 036585          136 CQGLLRVQ----GRPAAAYDDQGLVFGYE--KGPLDIFS---------VGGDISDANVVKFSNDGRLMLLTTMEGHIHVL  200 (304)
Q Consensus       136 ~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  200 (304)
                      .. .+...    ....+.+++++.++...  .+.+..++         +......+..++++++|+++++...++.|..|
T Consensus        94 ~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           94 FT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI  172 (300)
T ss_dssp             EE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             eE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence            32 22221    12245556666554333  22333332         22234567889999999966666667899999


Q ss_pred             EcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeee-eeccCCCCceEEeCCCCcEEEEec
Q 036585          201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS-WMSFDTEPPVIKWAPGSLMFVTGS  279 (304)
Q Consensus       201 d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~  279 (304)
                      |. +++... +.. +.....+..++++++|++.++....+.|.+||. +++.... +..+...+.+++++++|++.++..
T Consensus       173 ~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  248 (300)
T 2qc5_A          173 TN-TGKLEE-YPL-PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW  248 (300)
T ss_dssp             CT-TCCEEE-EEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             CC-CCcEEE-eeC-CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc
Confidence            98 555443 332 123456789999999987777777778999998 5544332 233456688999999998777664


Q ss_pred             Cc--eEEeccC
Q 036585          280 SE--LSFWIPD  288 (304)
Q Consensus       280 ~d--~~iw~~~  288 (304)
                      .+  +..++.+
T Consensus       249 ~~~~i~~~~~~  259 (300)
T 2qc5_A          249 GANQIGRITND  259 (300)
T ss_dssp             TTTEEEEECTT
T ss_pred             CCCeEEEECCC
Confidence            43  7777764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.50  E-value=7.7e-12  Score=109.13  Aligned_cols=206  Identities=11%  Similarity=0.066  Sum_probs=133.1

Q ss_pred             cccceeEEEEccCCCeEEEEecCC--CCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCC---------
Q 036585           56 KKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDR---------  124 (304)
Q Consensus        56 ~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------  124 (304)
                      +...+..++||||+++|+.+...+  ....|++||+.+++.+.... +......++|+ |++.|+.++.+.         
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            445688899999999999765421  13689999999998654311 11113578899 999888887764         


Q ss_pred             ----eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC-CCCCceEEEEecCCcEEEEeeC----CC
Q 036585          125 ----TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG-DISDANVVKFSNDGRLMLLTTM----EG  195 (304)
Q Consensus       125 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg  195 (304)
                          .|++|++.+.......-                         +.... +......+.|+|||++|+....    ..
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v-------------------------~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  259 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLV-------------------------FGAIPAQHHRYVGATVTEDDRFLLISAANSTSGN  259 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEE-------------------------ESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCC
T ss_pred             CCCcEEEEEECCCCcccceEE-------------------------EecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCc
Confidence                38888887665432221                         11112 2334567899999998866443    35


Q ss_pred             eEEEEEcCCCc-eeEEEEeCCCCCCcceEEEEcCCCcEEE-EecCC---CcEEEEecCCCce--eeeeeccCCCCceEEe
Q 036585          196 HIHVLDSFRGT-LLSTYNVKPVSRNSTLEASFSPEGMFVI-SGSGD---GSVHAWSVRSGKE--VASWMSFDTEPPVIKW  268 (304)
Q Consensus       196 ~i~~~d~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~d---g~i~v~d~~~~~~--~~~~~~~~~~i~~~~~  268 (304)
                      .|+++|+.++. ....+.   .+....... ++++|..|+ ....+   +.|..+|+.++..  ...+..|...+.  .|
T Consensus       260 ~i~~~d~~~~~~~~~~l~---~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~  333 (693)
T 3iuj_A          260 RLYVKDLSQENAPLLTVQ---GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV  333 (693)
T ss_dssp             EEEEEETTSTTCCCEEEE---CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE
T ss_pred             EEEEEECCCCCCceEEEe---CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE
Confidence            89999998764 344444   233444444 666665554 44333   5799999987654  345656665554  89


Q ss_pred             CCCCcEEEEecCc-----eEEeccCCccccc
Q 036585          269 APGSLMFVTGSSE-----LSFWIPDLSKLGA  294 (304)
Q Consensus       269 ~~~~~~l~s~~~d-----~~iw~~~~~~~~~  294 (304)
                      ++++++|+....+     +.+|+++......
T Consensus       334 s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~  364 (693)
T 3iuj_A          334 HSGSGYLFAEYMVDATARVEQFDYEGKRVRE  364 (693)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             EEECCEEEEEEEECCeeEEEEEECCCCeeEE
Confidence            9999887766543     6677776554433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.46  E-value=8.1e-11  Score=88.95  Aligned_cols=211  Identities=13%  Similarity=0.058  Sum_probs=140.9

Q ss_pred             cceeeeecccc-cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccc-ccEEEEEEcCCCCEEEEcccCC
Q 036585           47 ATCLKTINSKK-YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHH-DRVVLLSLCSSKDCFISGSLDR  124 (304)
Q Consensus        47 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg  124 (304)
                      .+.+.++.... .....+.|++++ .|+.++..-.++.|.++|+.+++.+..+.-.. .....+++.. +...++.-.++
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~   86 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCS
T ss_pred             ceEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCC
Confidence            34455554222 235789999986 55554321016899999999999887764211 1223455542 33444555788


Q ss_pred             eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585          125 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       125 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  204 (304)
                      .+.++|..+.+.+..+... .                              -....+++||+.++++..++.|.++|..+
T Consensus        87 ~v~viD~~t~~v~~~i~~g-~------------------------------~~g~glt~Dg~~l~vs~gs~~l~viD~~t  135 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQ-M------------------------------KDGWGLATDGKILYGSDGTSILYEIDPHT  135 (266)
T ss_dssp             EEEEEETTTTEEEEEEECC-S------------------------------SSCCEEEECSSSEEEECSSSEEEEECTTT
T ss_pred             EEEEEECCCCcEEEEEECC-C------------------------------CCeEEEEECCCEEEEECCCCeEEEEECCC
Confidence            9999999998887776532 0                              01234667888888877889999999999


Q ss_pred             CceeEEEEeCCC--CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccC-------------CCCceEEeC
Q 036585          205 GTLLSTYNVKPV--SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFD-------------TEPPVIKWA  269 (304)
Q Consensus       205 ~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-------------~~i~~~~~~  269 (304)
                      .+....+.....  .-..++.+.|. ++...+....++.|.+.|.++++.+..+....             ...+.|+|+
T Consensus       136 ~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~  214 (266)
T 2iwa_A          136 FKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD  214 (266)
T ss_dssp             CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred             CcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc
Confidence            998888874211  11235678887 77655555567899999999999988875321             345899999


Q ss_pred             CCCcEEEEecCc-eEEeccCCcc
Q 036585          270 PGSLMFVTGSSE-LSFWIPDLSK  291 (304)
Q Consensus       270 ~~~~~l~s~~~d-~~iw~~~~~~  291 (304)
                      |+++.++.++.. -+++.+++..
T Consensus       215 ~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          215 QENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCCCEEEEECCCCCeEEEEEEec
Confidence            998777766665 5555554433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.46  E-value=1.8e-11  Score=106.02  Aligned_cols=246  Identities=15%  Similarity=0.156  Sum_probs=155.1

Q ss_pred             CcEEEEeeC------CCeEEEEecCCcceeeeeccccc--------------------------------ceeEEEEccC
Q 036585           27 GIYLVTASD------DESIRLYDVTAATCLKTINSKKY--------------------------------GVDLVCFTSH   68 (304)
Q Consensus        27 ~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~--------------------------------~v~~~~~~~~   68 (304)
                      +..++.++.      ++.|+.+|..+++.+-++.....                                ....++++|+
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~  253 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE  253 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence            445555543      68999999999998866543211                                1135788899


Q ss_pred             CCeEEEEecCC----------------CCCceEEEEccCceeeeeccc--cc-------ccEEEEEEcCCC---CEEEEc
Q 036585           69 PTTVIYSSKNG----------------WDESLRLLSLHDNKYSRYFKG--HH-------DRVVLLSLCSSK---DCFISG  120 (304)
Q Consensus        69 ~~~l~~~~~~~----------------~d~~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~~l~~~  120 (304)
                      +..++++..++                +-+.|..+|..+++.+..++.  |.       .....+....+|   ..++.+
T Consensus       254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~  333 (677)
T 1kb0_A          254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHA  333 (677)
T ss_dssp             TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEE
Confidence            98888887521                002599999999988766553  21       122223444467   689999


Q ss_pred             ccCCeEEEEeCCcceeeceEEEeccc-eeEecCCCeEEEecCC---CeEEEEecCCC--CCceEEEEecCCcEEEEeeC-
Q 036585          121 SLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFGYEKG---PLDIFSVGGDI--SDANVVKFSNDGRLMLLTTM-  193 (304)
Q Consensus       121 ~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~-  193 (304)
                      +.+|.++++|.++++.+..+...... ...++..+........   ........+..  ..-..++++|++.++++... 
T Consensus       334 ~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~  413 (677)
T 1kb0_A          334 PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQN  413 (677)
T ss_dssp             CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred             CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChh
Confidence            99999999999999988766543221 1111111111100000   00000000000  11135778888777776543 


Q ss_pred             ------------------------------------------CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc
Q 036585          194 ------------------------------------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  231 (304)
Q Consensus       194 ------------------------------------------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  231 (304)
                                                                .|.|..||+.+++.+.++..    ..+.....+..++.
T Consensus       414 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~g~~~~~g~  489 (677)
T 1kb0_A          414 VPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH----VSPWNGGTLTTAGN  489 (677)
T ss_dssp             CCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTT
T ss_pred             cceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----CCCCcCcceEeCCC
Confidence                                                      27899999999999888873    33344455667788


Q ss_pred             EEEEecCCCcEEEEecCCCceeeeeeccC-CCCceEEeCCCCcEEE
Q 036585          232 FVISGSGDGSVHAWSVRSGKEVASWMSFD-TEPPVIKWAPGSLMFV  276 (304)
Q Consensus       232 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~  276 (304)
                      .++.++.||.+++||.++++.+.++.... ..-.-+.|.++|+.++
T Consensus       490 ~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          490 VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             EEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            89999999999999999999998886433 2334566777886443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.45  E-value=6.5e-11  Score=93.73  Aligned_cols=199  Identities=12%  Similarity=0.052  Sum_probs=126.9

Q ss_pred             eeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece
Q 036585           60 VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL  139 (304)
Q Consensus        60 v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  139 (304)
                      .....|+|++..++.....  ++.|..||..+++.. .+. ....+.++.|.|+++++++. . ..|.+||..+++....
T Consensus        51 ~egp~~~~~~~~l~~~d~~--~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNIL--ERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLH  124 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGG--GTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEE
T ss_pred             CcCCeEeCCCCEEEEEECC--CCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEE
Confidence            4567899986655555432  789999999887643 232 34679999999999877654 3 4499999877654322


Q ss_pred             EEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC------CCeEEEEEcCCCceeEEEEe
Q 036585          140 LRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM------EGHIHVLDSFRGTLLSTYNV  213 (304)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~  213 (304)
                      ......                         .....++.++++|+|+++++...      .+.|..++  +++...... 
T Consensus       125 ~~~~~~-------------------------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-  176 (326)
T 2ghs_A          125 AELESD-------------------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-  176 (326)
T ss_dssp             ECSSTT-------------------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-
T ss_pred             eeCCCC-------------------------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-
Confidence            110000                         01124678999999986665432      25666666  454433222 


Q ss_pred             CCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecC--CC-ce-----eeeeeccCCCCceEEeCCCCcEEEEecC-c-e
Q 036585          214 KPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVR--SG-KE-----VASWMSFDTEPPVIKWAPGSLMFVTGSS-E-L  282 (304)
Q Consensus       214 ~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~--~~-~~-----~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d-~  282 (304)
                         .......++|+|+++.|+.+ +.++.|.+||+.  ++ +.     +..+......+..+++.++|.+.++... . +
T Consensus       177 ---~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v  253 (326)
T 2ghs_A          177 ---DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV  253 (326)
T ss_dssp             ---EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEE
T ss_pred             ---CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEE
Confidence               22346789999999876554 557889999986  55 32     1222223345678999999987776643 3 8


Q ss_pred             EEeccCCcccccc
Q 036585          283 SFWIPDLSKLGAY  295 (304)
Q Consensus       283 ~iw~~~~~~~~~~  295 (304)
                      ..|+.+.+.+..+
T Consensus       254 ~~~d~~g~~~~~i  266 (326)
T 2ghs_A          254 DRYDTDGNHIARY  266 (326)
T ss_dssp             EEECTTCCEEEEE
T ss_pred             EEECCCCCEEEEE
Confidence            8888765544444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.45  E-value=4.6e-11  Score=103.80  Aligned_cols=232  Identities=11%  Similarity=0.154  Sum_probs=145.7

Q ss_pred             CCeEEEEecCCcceeeeeccc-------------------------------ccceeEEEEccCCCeEEEEecCCCCC--
Q 036585           36 DESIRLYDVTAATCLKTINSK-------------------------------KYGVDLVCFTSHPTTVIYSSKNGWDE--   82 (304)
Q Consensus        36 d~~i~vw~~~~~~~~~~~~~~-------------------------------~~~v~~~~~~~~~~~l~~~~~~~~d~--   82 (304)
                      +|.|..||..+++.+-.+...                               ......+++.|+...++++..   ++  
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~---~g~~  258 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVG---NGSL  258 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECC---CEES
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCC---CCCc
Confidence            689999999999987665421                               001125788888888888876   54  


Q ss_pred             -----------------ceEEEEccCceeeeeccc--cc-------ccEEEEEEcCCCC---EEEEcccCCeEEEEeCCc
Q 036585           83 -----------------SLRLLSLHDNKYSRYFKG--HH-------DRVVLLSLCSSKD---CFISGSLDRTVLLWDQRA  133 (304)
Q Consensus        83 -----------------~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~  133 (304)
                                       .|..+|..+|+.+..++.  |.       .++.......+|+   .++.++.+|.++++|.++
T Consensus       259 w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t  338 (689)
T 1yiq_A          259 WDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT  338 (689)
T ss_dssp             SCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             cccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC
Confidence                             499999999998776653  21       2222223333554   788999999999999999


Q ss_pred             ceeeceEEEeccc-eeEecC-CCeEEE-------ecCCCeEEEEecCC--CCCceEEEEecCCcEEEEeeC---------
Q 036585          134 EKCQGLLRVQGRP-AAAYDD-QGLVFG-------YEKGPLDIFSVGGD--ISDANVVKFSNDGRLMLLTTM---------  193 (304)
Q Consensus       134 ~~~~~~~~~~~~~-~~~~~~-~~~~~~-------~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~---------  193 (304)
                      ++.+......... ....+. .+.-+.       +.++.-.+ ...+.  ...-..++|+|+..++++...         
T Consensus       339 G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~-~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~  417 (689)
T 1yiq_A          339 GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNL-VTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHI  417 (689)
T ss_dssp             CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEE-ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECC
T ss_pred             CCEeccccccccccccccCccCCCcccchhhccccCCCCeeE-eCCCcccccCCCcceECCCCCEEEEeccccceeeeec
Confidence            9887554432211 000000 000000       00000000 00000  011233677777666665421         


Q ss_pred             ------------------------------------CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec
Q 036585          194 ------------------------------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       194 ------------------------------------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                                                          +|.|+.||+.+++.+.++...    .+.....++..+..++.++
T Consensus       418 ~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~gt  493 (689)
T 1yiq_A          418 PEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV----TIFNGGTLSTAGNLVFEGS  493 (689)
T ss_dssp             SSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEEC
T ss_pred             cccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC----CCccCccceECCCEEEEEC
Confidence                                                378999999999999888742    2333335666788999999


Q ss_pred             CCCcEEEEecCCCceeeeeeccCCC-CceEEeCCCCcEE
Q 036585          238 GDGSVHAWSVRSGKEVASWMSFDTE-PPVIKWAPGSLMF  275 (304)
Q Consensus       238 ~dg~i~v~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l  275 (304)
                      .||.++.||.++++.+.++....+. -.-+.|..+|++.
T Consensus       494 ~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          494 ADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence            9999999999999999888654332 2457777888644

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.44  E-value=3.5e-10  Score=91.39  Aligned_cols=245  Identities=11%  Similarity=0.030  Sum_probs=148.8

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV  105 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v  105 (304)
                      ++..++.++.++.|..+|.++++.+...............  .+..+++++.   ++.|..+|..+++.+..+.......
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~---~g~l~~~d~~tG~~~W~~~~~~~~~  176 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTS---NGQLQALNEADGAVKWTVNLDMPSL  176 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECT---TSEEEEEETTTCCEEEEEECCC---
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcC---CCeEEEEECCCCcEEEEEeCCCCce
Confidence            4667888889999999999999987666544322222222  2457777777   9999999999998776655322111


Q ss_pred             -----EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc-------------ceeEecCCCeEEEecCCCeEEE
Q 036585          106 -----VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-------------PAAAYDDQGLVFGYEKGPLDIF  167 (304)
Q Consensus       106 -----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~  167 (304)
                           .....  .+..++.++.++.+..+|.++++..........             .......+..++...++.+..+
T Consensus       177 ~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~  254 (376)
T 3q7m_A          177 SLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL  254 (376)
T ss_dssp             --CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred             eecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence                 11112  245788888899999999999888766653211             1111222223333334444444


Q ss_pred             EecCC-------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC
Q 036585          168 SVGGD-------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG  240 (304)
Q Consensus       168 ~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  240 (304)
                      +....       ......+..  ++..+++++.++.+..+|..+++........  ..........  .+..|+.++.+|
T Consensus       255 d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~--~~~~l~v~~~~g  328 (376)
T 3q7m_A          255 DLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL--LHRLLTSPVL--YNGNLVVGDSEG  328 (376)
T ss_dssp             ETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT--TTSCCCCCEE--ETTEEEEECTTS
T ss_pred             ECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc--CCCcccCCEE--ECCEEEEEeCCC
Confidence            33211       122233333  4667888888999999999999887665411  1122222222  346788888999


Q ss_pred             cEEEEecCCCceeeeeeccCCCCce-EEeCCCCcEEEEecCc--eEEe
Q 036585          241 SVHAWSVRSGKEVASWMSFDTEPPV-IKWAPGSLMFVTGSSE--LSFW  285 (304)
Q Consensus       241 ~i~v~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~d--~~iw  285 (304)
                      .|+++|.++++.+.........+.. ... .++ .|+.++.+  +..|
T Consensus       329 ~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~-~l~v~~~~G~l~~~  374 (376)
T 3q7m_A          329 YLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADG-KLLIQAKDGTVYSI  374 (376)
T ss_dssp             EEEEEETTTCCEEEEEECCTTCBCSCCEE-ETT-EEEEEBTTSCEEEE
T ss_pred             eEEEEECCCCcEEEEEecCCCcceeCCEE-ECC-EEEEEeCCCEEEEE
Confidence            9999999999988777653343332 222 233 45555555  4444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.44  E-value=2.2e-11  Score=105.61  Aligned_cols=243  Identities=12%  Similarity=0.090  Sum_probs=159.3

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeeccc-c----cceeE-EEEccCCCeEEEEecCC---CCCceEEEEccCceeee
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSK-K----YGVDL-VCFTSHPTTVIYSSKNG---WDESLRLLSLHDNKYSR   96 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~----~~v~~-~~~~~~~~~l~~~~~~~---~d~~i~vwd~~~~~~~~   96 (304)
                      ++..+++++.|+.|..+|..+++.+-++..+ .    ..+.. ...  .+..+++++...   .++.|+.+|..+++.+.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            4678888899999999999999998777654 1    11211 111  245566655311   26899999999998776


Q ss_pred             ecccccc--------------------------------cEEEEEEcCCCCEEEEcccCC-------------------e
Q 036585           97 YFKGHHD--------------------------------RVVLLSLCSSKDCFISGSLDR-------------------T  125 (304)
Q Consensus        97 ~~~~~~~--------------------------------~v~~~~~~~~~~~l~~~~~dg-------------------~  125 (304)
                      .+.....                                ....+++.|++..++.+..++                   .
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s  284 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence            5542111                                112467888888888877664                   4


Q ss_pred             EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC---cEEEEeeCCCeEEEEEc
Q 036585          126 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG---RLMLLTTMEGHIHVLDS  202 (304)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~~~d~  202 (304)
                      |..+|.++++....+.......                   |+... ......+....+|   ..+++++.+|.++++|.
T Consensus       285 v~AlD~~TG~~~W~~~~~~~d~-------------------wd~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~  344 (677)
T 1kb0_A          285 IVALDPDTGKYKWHYQETPGDN-------------------WDYTS-TQPMILADIKIAGKPRKVILHAPKNGFFFVLDR  344 (677)
T ss_dssp             EEEECTTTCCEEEEEESSTTCC-------------------SCCCC-CSCCEEEEEEETTEEEEEEEECCTTSEEEEEET
T ss_pred             EEEEECCCCCEEEEEecCCCcc-------------------ccccc-CCCcEEEecccCCcEeeEEEEECCCCEEEEEEC
Confidence            8888888888776665321110                   00000 1122223444577   68899999999999999


Q ss_pred             CCCceeEEEEeCCCC--------CCcc------------------------eEEEEcCCCcEEEEecC------------
Q 036585          203 FRGTLLSTYNVKPVS--------RNST------------------------LEASFSPEGMFVISGSG------------  238 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~--------~~~i------------------------~~~~~s~~~~~l~~~~~------------  238 (304)
                      ++|+.+..+...+..        ..++                        ..++|+|++.++++...            
T Consensus       345 ~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~  424 (677)
T 1kb0_A          345 TNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKW  424 (677)
T ss_dssp             TTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTC
T ss_pred             CCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccc
Confidence            999998877632110        0001                        14688998888877532            


Q ss_pred             -------------------------------CCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEe
Q 036585          239 -------------------------------DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFW  285 (304)
Q Consensus       239 -------------------------------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw  285 (304)
                                                     .|.|..||+.+++.+.++. +..++....+..++.+++.++.|  +++|
T Consensus       425 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~  503 (677)
T 1kb0_A          425 EFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAY  503 (677)
T ss_dssp             CTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred             ccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEE
Confidence                                           2779999999999887775 44455666677777778878777  7777


Q ss_pred             ccCCcc
Q 036585          286 IPDLSK  291 (304)
Q Consensus       286 ~~~~~~  291 (304)
                      +....+
T Consensus       504 D~~tG~  509 (677)
T 1kb0_A          504 HAATGE  509 (677)
T ss_dssp             ETTTCC
T ss_pred             ECCCCc
Confidence            775443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=8.8e-11  Score=93.68  Aligned_cols=205  Identities=8%  Similarity=-0.014  Sum_probs=131.3

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec-------ccccccEEEEEEcCCCCEEEEccc-----CCe
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF-------KGHHDRVVLLSLCSSKDCFISGSL-----DRT  125 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~-----dg~  125 (304)
                      ..+..++++++++.+++..... ++.++||.+.+++.. .+       ..+...+..+++.++++++++-..     ++.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~-~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFY-QPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGG-CCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCC-CCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            5788999999998888764210 343666666555432 22       234567899999999876665433     578


Q ss_pred             EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEE-EEee---CCCeEEEEE
Q 036585          126 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLM-LLTT---MEGHIHVLD  201 (304)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~---~dg~i~~~d  201 (304)
                      |.+||+.+++....+......                       ..+...+..+++++++..+ ++..   .++.|.+||
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~-----------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d  151 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPI-----------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVD  151 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTT-----------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEE
T ss_pred             EEEEECCCCeEEEEEECChhh-----------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEE
Confidence            999999988766555432110                       0122456889999865444 4444   578999999


Q ss_pred             cCCCceeEEEEeCCC--------------------------CCCcceEEEEcCCCcEEEEecCCC-cEEEEecC---CCc
Q 036585          202 SFRGTLLSTYNVKPV--------------------------SRNSTLEASFSPEGMFVISGSGDG-SVHAWSVR---SGK  251 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~--------------------------~~~~i~~~~~s~~~~~l~~~~~dg-~i~v~d~~---~~~  251 (304)
                      +.+++....+..+..                          ....+..++|+|+++.|+.+..++ .++.++..   .+.
T Consensus       152 ~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~  231 (343)
T 2qe8_A          152 LQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQ  231 (343)
T ss_dssp             TTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTT
T ss_pred             CCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCC
Confidence            988776544321000                          012357899999999888886655 45555532   111


Q ss_pred             -----eee--eeeccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585          252 -----EVA--SWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       252 -----~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~  287 (304)
                           ...  ...++.+....++++++|.++++...+  |.+|+.
T Consensus       232 ~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          232 LTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             CCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             CChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence                 011  112345567889999999888877666  888887

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.43  E-value=9.7e-11  Score=87.48  Aligned_cols=205  Identities=11%  Similarity=0.069  Sum_probs=137.9

Q ss_pred             ceeeeecccccc--eeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEE-cccCC
Q 036585           48 TCLKTINSKKYG--VDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFIS-GSLDR  124 (304)
Q Consensus        48 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg  124 (304)
                      +.+.++. |...  ...+.|+ ++..+.+.+..+ ...|+++|+.+++.+..+.... ........++++.|+. .-.++
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g-~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~  107 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNG-RSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETT-EEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCC-CceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCC
Confidence            3455553 4322  4678888 554444544411 2499999999999887775332 3322222233444444 44688


Q ss_pred             eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585          125 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       125 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  204 (304)
                      .+.+||.++.+.+..+....                                ....++++++.|+.+..++.|.++|..+
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~--------------------------------eG~glt~dg~~L~~SdGs~~i~~iDp~T  155 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDG--------------------------------EGWGLTHNDQYLIMSDGTPVLRFLDPES  155 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSS--------------------------------CCCCEEECSSCEEECCSSSEEEEECTTT
T ss_pred             EEEEEECccCcEEEEEECCC--------------------------------CceEEecCCCEEEEECCCCeEEEEcCCC
Confidence            99999999999888776421                                1133446788788877788999999999


Q ss_pred             CceeEEEEeCC-C-CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeecc------------CCCCceEEeCC
Q 036585          205 GTLLSTYNVKP-V-SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF------------DTEPPVIKWAP  270 (304)
Q Consensus       205 ~~~~~~~~~~~-~-~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~i~~~~~~~  270 (304)
                      .+...++.... + .-..++.+.|. +|+..+..-.++.|.+.|.++++.+..+...            ....+.|+|+|
T Consensus       156 ~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp  234 (262)
T 3nol_A          156 LTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK  234 (262)
T ss_dssp             CSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET
T ss_pred             CeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC
Confidence            99998887421 0 11334457776 7765555556789999999999988777432            13458999999


Q ss_pred             CCcEEEEecCc-eEEeccCC
Q 036585          271 GSLMFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       271 ~~~~l~s~~~d-~~iw~~~~  289 (304)
                      +++.|+..+.. =++|.+.+
T Consensus       235 ~~~~lfVTGK~Wp~~~ev~~  254 (262)
T 3nol_A          235 EHHRLFVTGKLWPKVFEITL  254 (262)
T ss_dssp             TTTEEEEEETTCSEEEEEEE
T ss_pred             CCCEEEEECCCCCceEEEEE
Confidence            99999888888 66666554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.42  E-value=2.5e-09  Score=82.14  Aligned_cols=221  Identities=9%  Similarity=-0.012  Sum_probs=138.1

Q ss_pred             ceeeEeecccCcEE-EEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           17 SEEILQSMEVGIYL-VTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        17 ~~~~i~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      +...+.+.++++.| ++-..++.|.+++.........+.........+++.+++..++.+...  .+.|.++++......
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~--~~~I~~~~~~g~~~~  114 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ--LDRIEVAKMDGTQRR  114 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECC--CCEEEEEEcCCCCEE
Confidence            44567778765544 455567899999987655433333323467899999987777776543  789999998654322


Q ss_pred             eecccccccEEEEEEcCCCCEEEEccc---CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585           96 RYFKGHHDRVVLLSLCSSKDCFISGSL---DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD  172 (304)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (304)
                      ............++++|++..|+.+..   .+.|..+++.... ...+..                            ..
T Consensus       115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~----------------------------~~  165 (267)
T 1npe_A          115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQ----------------------------DN  165 (267)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEEC----------------------------TT
T ss_pred             EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEE----------------------------CC
Confidence            222212245688999996665555443   3678777765322 111110                            11


Q ss_pred             CCCceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc
Q 036585          173 ISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK  251 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~  251 (304)
                      ......++++|++..|+++ ...+.|.++|...........   . ......++.. ++..+++....+.|.++|..+++
T Consensus       166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~  240 (267)
T 1npe_A          166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---G-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISK  240 (267)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---C-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---C-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCC
Confidence            2346789999987666555 456799999987544333333   1 2233566654 34344444456889999999998


Q ss_pred             eeeeeeccC-CCCceEEeCCCCc
Q 036585          252 EVASWMSFD-TEPPVIKWAPGSL  273 (304)
Q Consensus       252 ~~~~~~~~~-~~i~~~~~~~~~~  273 (304)
                      .+..+.... .....+++.|++.
T Consensus       241 ~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          241 EMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEECCSSCCCCCCEEEECSCC
T ss_pred             ceEEEccccccccceeeecCccC
Confidence            888875433 3478899988864

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.42  E-value=3e-10  Score=91.36  Aligned_cols=221  Identities=11%  Similarity=0.083  Sum_probs=146.5

Q ss_pred             eEEEEecCC-----cceeeeecccc--cceeEEEE-----------c--cCCCeEEEEecCCCCCceEEEEccCc----e
Q 036585           38 SIRLYDVTA-----ATCLKTINSKK--YGVDLVCF-----------T--SHPTTVIYSSKNGWDESLRLLSLHDN----K   93 (304)
Q Consensus        38 ~i~vw~~~~-----~~~~~~~~~~~--~~v~~~~~-----------~--~~~~~l~~~~~~~~d~~i~vwd~~~~----~   93 (304)
                      .|.+.|++.     ++.+..+.-..  ...+.+.|           +  +++++|++.+..  ++.|.++|+.+.    +
T Consensus        44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~--s~~I~viD~~t~p~~p~  121 (462)
T 2ece_A           44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLR--SSRIYIIDTKPNPREPK  121 (462)
T ss_dssp             EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTT--TCCEEEEECCSCTTSCE
T ss_pred             eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCC--CCeEEEEECCCCCCCce
Confidence            366677765     56665544211  23344444           6  788888888765  899999999755    4


Q ss_pred             eeeecc------c-ccccEEEEEEcCCCCEEEEcccC------CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEec
Q 036585           94 YSRYFK------G-HHDRVVLLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYE  160 (304)
Q Consensus        94 ~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (304)
                      ..+++.      . -......+...|++ .++++..+      +.+.++|.++.+.+........               
T Consensus       122 ~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~---------------  185 (462)
T 2ece_A          122 IIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG---------------  185 (462)
T ss_dssp             EEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT---------------
T ss_pred             eeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC---------------
Confidence            555552      1 11244567788999 77766555      7899999998887766543211               


Q ss_pred             CCCeEEEEecCCCCCceEEEEecCCcEEEEee-------------------CCCeEEEEEcCCCceeEEEEeCCCCCCcc
Q 036585          161 KGPLDIFSVGGDISDANVVKFSNDGRLMLLTT-------------------MEGHIHVLDSFRGTLLSTYNVKPVSRNST  221 (304)
Q Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~i  221 (304)
                                 ....-..+.|+|+++.++++.                   ...+|.+||+.+++.+.++.... .....
T Consensus       186 -----------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~-~g~~P  253 (462)
T 2ece_A          186 -----------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE-ENRMA  253 (462)
T ss_dssp             -----------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT-TEEEE
T ss_pred             -----------CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC-CCCcc
Confidence                       112234588899999888884                   36899999999998888887421 11233


Q ss_pred             eEEEE--cCCCcEEEEecC------CCcEEEEecCCCce--eeee--ec----------------cCCCCceEEeCCCCc
Q 036585          222 LEASF--SPEGMFVISGSG------DGSVHAWSVRSGKE--VASW--MS----------------FDTEPPVIKWAPGSL  273 (304)
Q Consensus       222 ~~~~~--s~~~~~l~~~~~------dg~i~v~d~~~~~~--~~~~--~~----------------~~~~i~~~~~~~~~~  273 (304)
                      ..+.|  +|+++++++++.      ++.|.+|....++.  .+.+  ..                -...+..|.++|||+
T Consensus       254 ~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr  333 (462)
T 2ece_A          254 LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK  333 (462)
T ss_dssp             EEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC
T ss_pred             ceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCC
Confidence            34555  999999888764      56787776654321  1111  00                024578999999999


Q ss_pred             EEEEecCc---eEEeccC
Q 036585          274 MFVTGSSE---LSFWIPD  288 (304)
Q Consensus       274 ~l~s~~~d---~~iw~~~  288 (304)
                      +|+++...   +.+|+++
T Consensus       334 fLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          334 FLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EEEEEETTTTEEEEEECS
T ss_pred             EEEEEeCCCCEEEEEEec
Confidence            99888765   8888874

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.41  E-value=1.8e-10  Score=87.01  Aligned_cols=201  Identities=9%  Similarity=-0.033  Sum_probs=139.0

Q ss_pred             eeEeecccCcEEEEeeC--CCeEEEEecCCcceeeeeccccc-ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           19 EILQSMEVGIYLVTASD--DESIRLYDVTAATCLKTINSKKY-GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      .-+.+.+++.++++.+.  ++.|++.|+.+++.+..+..... ....+++  +++.|+.+...  ++.+.++|..+.+.+
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~--~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWL--KNIGFIYDRRTLSNI   99 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEETT--CSEEEEEETTTTEEE
T ss_pred             ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEec--CCEEEEEECCCCcEE
Confidence            35778888766665553  57999999999999888753221 2223444  46677777654  899999999999888


Q ss_pred             eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC
Q 036585           96 RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD  175 (304)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (304)
                      ..+......  ...++++++.++.+..++.|.++|.++.+....+......                        .....
T Consensus       100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~------------------------~p~~~  153 (266)
T 2iwa_A          100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG------------------------HRVIR  153 (266)
T ss_dssp             EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT------------------------EECCC
T ss_pred             EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC------------------------ccccc
Confidence            877532121  2335567776666667889999999998877766543210                        01123


Q ss_pred             ceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC----------CCCCcceEEEEcCCCcE-EEEecCCCcEEE
Q 036585          176 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP----------VSRNSTLEASFSPEGMF-VISGSGDGSVHA  244 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----------~~~~~i~~~~~s~~~~~-l~~~~~dg~i~v  244 (304)
                      ++.+.|. +|..++....++.|.+.|..+++.+..+....          ......+.++|+|+++. ++++...+.+.+
T Consensus       154 ~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~  232 (266)
T 2iwa_A          154 LNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE  232 (266)
T ss_dssp             EEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             ceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence            5677887 77655555567899999999999999988421          01135589999999865 555667788998


Q ss_pred             EecCCC
Q 036585          245 WSVRSG  250 (304)
Q Consensus       245 ~d~~~~  250 (304)
                      .++...
T Consensus       233 i~l~~~  238 (266)
T 2iwa_A          233 IKLHLV  238 (266)
T ss_dssp             EEEEEC
T ss_pred             EEEecc
Confidence            888654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.41  E-value=1.3e-10  Score=96.64  Aligned_cols=242  Identities=11%  Similarity=0.069  Sum_probs=156.9

Q ss_pred             EEEeeCCCeEEEEecCCcceeeeec-----------------------------------c----cccceeEEEEcc---
Q 036585           30 LVTASDDESIRLYDVTAATCLKTIN-----------------------------------S----KKYGVDLVCFTS---   67 (304)
Q Consensus        30 l~~~~~d~~i~vw~~~~~~~~~~~~-----------------------------------~----~~~~v~~~~~~~---   67 (304)
                      +.+|+..|.++|+-+.+++.++.+.                                   +    ..+.......|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            6688899999999988877665431                                   0    012233456665   


Q ss_pred             --CCCeEEEEecCCCCCceEEEEccCceeeeeccc-ccccEEEEEE-c-CCCCEEEEcc------------------cCC
Q 036585           68 --HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG-HHDRVVLLSL-C-SSKDCFISGS------------------LDR  124 (304)
Q Consensus        68 --~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~~~~------------------~dg  124 (304)
                        ||+++++....  +..|.+.|+.+.+....+.- .......+++ + |+++++++++                  .++
T Consensus        98 ~~DG~~lfVnd~~--~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A           98 KYDGRFLFMNDKA--NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEEEETT--TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             CcCCCEEEEEcCC--CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence              88888887763  77899999999987774432 2345778887 5 8999988884                  356


Q ss_pred             eEEEEeCCcceeeceEEEeccc-eeEecCCCeEEEe---cCCC--------------eEEEEecCCCCCceEEEEecCCc
Q 036585          125 TVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFGY---EKGP--------------LDIFSVGGDISDANVVKFSNDGR  186 (304)
Q Consensus       125 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~  186 (304)
                      .+.+.|.++.+....+...+.+ .+..++++..+-.   ....              +.+++....      ..+.++|+
T Consensus       176 ~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~------~~~v~~Gk  249 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI------EKAIAAGD  249 (595)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH------HHHHHHTC
T ss_pred             eEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce------eEeccCCC
Confidence            7999999998888888764433 4555665533211   1111              111111100      01334565


Q ss_pred             EEEEeeCCCeEEEEEcCC--Cce-eEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecCCCc-----------
Q 036585          187 LMLLTTMEGHIHVLDSFR--GTL-LSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVRSGK-----------  251 (304)
Q Consensus       187 ~l~~~~~dg~i~~~d~~~--~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~-----------  251 (304)
                      +...    +.|.+.|.++  ++. +..+..    .....++.++|||+++++++ .+..|.++|+.+.+           
T Consensus       250 ~~~i----~~V~VID~~~~~~~~~~~~Ipv----g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~  321 (595)
T 1fwx_A          250 YQEL----NGVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  321 (595)
T ss_dssp             SEEE----TTEEEEECSGGGCCSSEEEEEE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred             eeEE----CcEEEEeCcccCCceeEEEEec----CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence            4443    4599999988  545 455552    23455689999999877765 67889999998653           


Q ss_pred             -eeeeeeccCCCCceEEeCCCCcEEEEe-cCc--eEEeccCC
Q 036585          252 -EVASWMSFDTEPPVIKWAPGSLMFVTG-SSE--LSFWIPDL  289 (304)
Q Consensus       252 -~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~d--~~iw~~~~  289 (304)
                       ....+. -......++|+|+| .+++. --+  +..|+++.
T Consensus       322 ~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          322 AVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             GEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             ceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence             233332 33457889999999 55444 334  88898865

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.40  E-value=1.4e-10  Score=91.91  Aligned_cols=199  Identities=12%  Similarity=0.105  Sum_probs=107.7

Q ss_pred             CCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecCCCeEEE
Q 036585           81 DESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVFG  158 (304)
Q Consensus        81 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  158 (304)
                      ++.|..+|.. ++...........+.++...+++..++... ++.+..+|.. ++....+.....  ..+..+.++.++.
T Consensus       116 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v  192 (330)
T 3hxj_A          116 DGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSN-DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF  192 (330)
T ss_dssp             TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECT-TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE
T ss_pred             CCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcC-CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE
Confidence            4555555555 444443333344444445555555555543 2445555554 333333322111  1122222222222


Q ss_pred             ecCCCeE--------EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC
Q 036585          159 YEKGPLD--------IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG  230 (304)
Q Consensus       159 ~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  230 (304)
                      .. +.+.        +|........+.++...++|. +.+++.++.+..+| .+++....+..   ....+..+.+.+++
T Consensus       193 ~t-~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~---~~~~~~~~~~~~~g  266 (330)
T 3hxj_A          193 GS-DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKT---GKRIESSPVIGNTD  266 (330)
T ss_dssp             ES-SSEEEECTTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEEC---SSCCCSCCEECTTS
T ss_pred             Ee-CEEEEECCCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeC---CCCccccceEcCCC
Confidence            11 2222        222223335577788888875 66677788888888 46666666652   23333445566566


Q ss_pred             cEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCc
Q 036585          231 MFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLS  290 (304)
Q Consensus       231 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~  290 (304)
                       .|..++.+|.|..+|. +++.+..+......+.++...+++.+.+.+... +.+...+.+
T Consensus       267 -~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          267 -TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             -CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC---
T ss_pred             -eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecccc
Confidence             4666777888999995 777776666556678888888888766655444 555544433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.40  E-value=7.5e-11  Score=102.44  Aligned_cols=245  Identities=11%  Similarity=0.102  Sum_probs=154.9

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeeccc--ccceeEEEEcc--CCCeEEEEecC---CCCCceEEEEccCceeeeec
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSK--KYGVDLVCFTS--HPTTVIYSSKN---GWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~--~~~~l~~~~~~---~~d~~i~vwd~~~~~~~~~~   98 (304)
                      ++..+++++.|+.|..+|.++|+.+-.+...  ......+..+|  .+..++++...   +.++.|+.||..+|+.+..+
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            4668888899999999999999988666542  11111111112  13455555421   12689999999999877655


Q ss_pred             ccc-------------------------------cccEEEEEEcCCCCEEEEcccCCe-------------------EEE
Q 036585           99 KGH-------------------------------HDRVVLLSLCSSKDCFISGSLDRT-------------------VLL  128 (304)
Q Consensus        99 ~~~-------------------------------~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~i  128 (304)
                      ...                               ......+.+.|+..+++.+..++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            310                               001125678888888888887764                   888


Q ss_pred             EeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCc---EEEEeeCCCeEEEEEcCCC
Q 036585          129 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGR---LMLLTTMEGHIHVLDSFRG  205 (304)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~~~d~~~~  205 (304)
                      +|.++++....+.........++                    ............+|+   .++.++.+|.++++|.++|
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~--------------------~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG  339 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYT--------------------ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG  339 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCC--------------------CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             EEccCCceeEeeecCCccccccc--------------------CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence            89888887766653211100000                    001111122233565   7889999999999999999


Q ss_pred             ceeEEEEeCCC-------------------------CC-----------CcceEEEEcCCCcEEEEecC-----------
Q 036585          206 TLLSTYNVKPV-------------------------SR-----------NSTLEASFSPEGMFVISGSG-----------  238 (304)
Q Consensus       206 ~~~~~~~~~~~-------------------------~~-----------~~i~~~~~s~~~~~l~~~~~-----------  238 (304)
                      +.+......+.                         ..           ..-..++|+|+..++++...           
T Consensus       340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~  419 (689)
T 1yiq_A          340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPE  419 (689)
T ss_dssp             CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSS
T ss_pred             CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccc
Confidence            98865542210                         00           00112688998887776521           


Q ss_pred             ----------------------------------CCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--e
Q 036585          239 ----------------------------------DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--L  282 (304)
Q Consensus       239 ----------------------------------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~  282 (304)
                                                        +|.|+.||+.+++.+.++..+. +...-.+...+.+++.++.|  +
T Consensus       420 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l  498 (689)
T 1yiq_A          420 APKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRV  498 (689)
T ss_dssp             CCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEE
T ss_pred             cccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcE
Confidence                                              3779999999999988876543 34444566677788888888  8


Q ss_pred             EEeccCCcc
Q 036585          283 SFWIPDLSK  291 (304)
Q Consensus       283 ~iw~~~~~~  291 (304)
                      +.|+.+..+
T Consensus       499 ~a~D~~tG~  507 (689)
T 1yiq_A          499 IAYAADTGE  507 (689)
T ss_dssp             EEEETTTCC
T ss_pred             EEEECCCCc
Confidence            888876544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.39  E-value=1.6e-10  Score=86.29  Aligned_cols=186  Identities=11%  Similarity=0.097  Sum_probs=129.9

Q ss_pred             EeecccCcEEEEeeCCC--eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           21 LQSMEVGIYLVTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      +.+. ++.++.+.+.+|  .|+++|+++++.+.++.... ........++++.|+.....  ++.+.+||..+.+.+.++
T Consensus        48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~--~~~v~v~D~~t~~~~~ti  123 (262)
T 3nol_A           48 FFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWK--NGLGFVWNIRNLRQVRSF  123 (262)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESS--SSEEEEEETTTCCEEEEE
T ss_pred             EEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEee--CCEEEEEECccCcEEEEE
Confidence            4555 677777777776  89999999999998876543 33333344456777777653  899999999999988888


Q ss_pred             ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585           99 KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV  178 (304)
Q Consensus        99 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  178 (304)
                      ....   ....+.++++.|+.+..++.|.++|..+.+....+......                        .....++.
T Consensus       124 ~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g------------------------~~~~~lNE  176 (262)
T 3nol_A          124 NYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG------------------------EELPELNE  176 (262)
T ss_dssp             ECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT------------------------EECCCEEE
T ss_pred             ECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC------------------------ccccccce
Confidence            7422   22233356777777666789999999998887776543110                        01133456


Q ss_pred             EEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC---------CCCcceEEEEcCCCcEEEEecC
Q 036585          179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV---------SRNSTLEASFSPEGMFVISGSG  238 (304)
Q Consensus       179 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---------~~~~i~~~~~s~~~~~l~~~~~  238 (304)
                      +.|. +|+.++..-.+..|.+.|.++++.+..+.....         ...-.+.++|+|+++.|+..+.
T Consensus       177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            7776 777555555688999999999999999985311         1235688999998877766653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.38  E-value=1.4e-09  Score=87.94  Aligned_cols=251  Identities=11%  Similarity=0.054  Sum_probs=149.9

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeecccc---------cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKK---------YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      .+..+++++.++.|..+|.++++.+-.+....         ..+.. ....++..+++++.   ++.|..+|..+++...
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~---~g~l~a~d~~tG~~~W  127 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSE---KAQVYALNTSDGTVAW  127 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEET---TSEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcC---CCEEEEEECCCCCEEE
Confidence            46788888889999999999998876655421         12222 22235667888877   8999999999998776


Q ss_pred             ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc-------eeEecCCCeEEEecCCCeEEE--
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-------AAAYDDQGLVFGYEKGPLDIF--  167 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--  167 (304)
                      ..............  .+..++.++.++.+..+|.++++...........       ......+..+++..++.+..+  
T Consensus       128 ~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~  205 (376)
T 3q7m_A          128 QTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLM  205 (376)
T ss_dssp             EEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEET
T ss_pred             EEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEEC
Confidence            55433221111122  2447888888999999999999887766543221       112222223333333333333  


Q ss_pred             -------EecCCCC-------CceEEEEec--CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc
Q 036585          168 -------SVGGDIS-------DANVVKFSN--DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  231 (304)
Q Consensus       168 -------~~~~~~~-------~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  231 (304)
                             .......       .+..+...|  .+..+++++.++.+..+|.++++.+.....     .....+..  ++.
T Consensus       206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-----~~~~~~~~--~~~  278 (376)
T 3q7m_A          206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-----GSVNDFIV--DGN  278 (376)
T ss_dssp             TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC-----CCEEEEEE--ETT
T ss_pred             CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC-----CCCCCceE--ECC
Confidence                   3221110       000010111  245677788899999999999998766542     22333333  456


Q ss_pred             EEEEecCCCcEEEEecCCCceeeeeec-cCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          232 FVISGSGDGSVHAWSVRSGKEVASWMS-FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       232 ~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      .++.++.++.|..+|.++++.+..... ....+......  +..|+.++.+  +..++....+
T Consensus       279 ~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          279 RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTCC
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCCc
Confidence            777888899999999999998766542 22223333332  3455555555  6666655443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.35  E-value=6.1e-09  Score=82.24  Aligned_cols=232  Identities=9%  Similarity=0.034  Sum_probs=142.1

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecc--------------------cccceeEEEEccCCCeEEEEe
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINS--------------------KKYGVDLVCFTSHPTTVIYSS   76 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~~~~   76 (304)
                      .+..+.+.++|++++++..++.|..|+..+++.. .+..                    ....+..+++.++...|+++.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            3556778888987888888999999998765432 2210                    113578899998444566665


Q ss_pred             cCCCCCceEEEEccCceeeeeccc-----ccccEEEEEEcC-CCCEEEEccc-----------------CCeEEEEeCCc
Q 036585           77 KNGWDESLRLLSLHDNKYSRYFKG-----HHDRVVLLSLCS-SKDCFISGSL-----------------DRTVLLWDQRA  133 (304)
Q Consensus        77 ~~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~iwd~~~  133 (304)
                      .   .+.|..+|..+++. ..+..     .......+++.+ +|++.++-..                 ++.|..||..+
T Consensus        99 ~---~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           99 C---YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             T---TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             C---CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            4   44588888776542 22211     112467788999 8876665322                 35677777665


Q ss_pred             ceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEe-eCCCeEEEEEcCCCc--eeEE
Q 036585          134 EKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGT--LLST  210 (304)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~--~~~~  210 (304)
                      ++......                              .....+.++++|+++.|+++ ...+.|.+|++....  ....
T Consensus       175 ~~~~~~~~------------------------------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~  224 (322)
T 2fp8_A          175 KETTLLLK------------------------------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV  224 (322)
T ss_dssp             TEEEEEEE------------------------------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE
T ss_pred             CEEEEecc------------------------------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce
Confidence            54322111                              01234669999999876665 556899999987532  1222


Q ss_pred             EEeCCCCCCcceEEEEcCCCcEEEEecC----------CCcEEEEecCCCceeeeeeccC----CCCceEEeCCCCcEEE
Q 036585          211 YNVKPVSRNSTLEASFSPEGMFVISGSG----------DGSVHAWSVRSGKEVASWMSFD----TEPPVIKWAPGSLMFV  276 (304)
Q Consensus       211 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~  276 (304)
                      +..   ..+ ...++++++|++.++...          .+.|..+|. +++.+..+....    ..++.+++ .++++++
T Consensus       225 ~~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v  298 (322)
T 2fp8_A          225 LVK---IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYI  298 (322)
T ss_dssp             EEE---CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEE
T ss_pred             EEe---CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEE
Confidence            221   122 677999999987666543          466888886 577776665432    34677777 3555555


Q ss_pred             EecCc--eEEeccCC
Q 036585          277 TGSSE--LSFWIPDL  289 (304)
Q Consensus       277 s~~~d--~~iw~~~~  289 (304)
                      +....  +..++++.
T Consensus       299 ~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          299 GTLFHGSVGILVYDK  313 (322)
T ss_dssp             ECSSCSEEEEEEC--
T ss_pred             eecCCCceEEEeccc
Confidence            54433  66666553

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.34  E-value=8.8e-11  Score=93.04  Aligned_cols=246  Identities=12%  Similarity=0.118  Sum_probs=147.2

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEE
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVV  106 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  106 (304)
                      +..+..++.++.|..|| .+++.+..+..+...+.++...+++ .+.+++    ++ |..+|. +++....+........
T Consensus        30 ~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t----~~-l~~~d~-~g~~~~~~~~~~~~~~  101 (330)
T 3hxj_A           30 NGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDG-TIYFGS----DK-VYAINP-DGTEKWRFDTKKAIVS  101 (330)
T ss_dssp             TSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTT-EECCSS----CE-EEEECC-CGGGGGGSCC-----C
T ss_pred             CCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCC-cEEEec----Cc-EEEECC-CCcEEEEEECCCCccc
Confidence            34566777788899999 8888776666555556677776665 455555    34 888886 5655544443332222


Q ss_pred             EEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--ceeEecCCCeEE-EecCCCeEEE--------EecCCCCC
Q 036585          107 LLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--PAAAYDDQGLVF-GYEKGPLDIF--------SVGGDISD  175 (304)
Q Consensus       107 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~  175 (304)
                      ...+.  +..++.++.++.+..+|.. ++..........  .....++++.++ +..++.+..+        ........
T Consensus       102 ~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~  178 (330)
T 3hxj_A          102 DFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAI  178 (330)
T ss_dssp             CEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCC
T ss_pred             CceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCc
Confidence            33333  4567778888999999988 665544443222  122334333332 2223333333        33334455


Q ss_pred             ceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeee
Q 036585          176 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS  255 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~  255 (304)
                      +.++...+++. +.+++  +.|..+| .+++....+.   .....+.++..+++|. |..++.++.|..+| .+++.+..
T Consensus       179 ~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~---~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~  249 (330)
T 3hxj_A          179 TSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFY---AGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWR  249 (330)
T ss_dssp             CSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEEC---CSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEE
T ss_pred             eeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEc---cCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEE
Confidence            56666666665 77777  7788888 6776665554   3446677778877764 44555688888887 46666666


Q ss_pred             eeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCccc
Q 036585          256 WMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSKL  292 (304)
Q Consensus       256 ~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~~  292 (304)
                      +......+..+...+++.+.+..... +..++.+.+.+
T Consensus       250 ~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~  287 (330)
T 3hxj_A          250 FKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEK  287 (330)
T ss_dssp             EECSSCCCSCCEECTTSCEEEECTTCEEEEECTTSCEE
T ss_pred             eeCCCCccccceEcCCCeEEEecCCCCEEEECCCCcEE
Confidence            66565666777776677555444433 66665433333

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.34  E-value=4.8e-10  Score=83.73  Aligned_cols=201  Identities=12%  Similarity=0.029  Sum_probs=136.1

Q ss_pred             ceeeeeccccc--ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE--EEEEEcCCCCEEEEcccC
Q 036585           48 TCLKTINSKKY--GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV--VLLSLCSSKDCFISGSLD  123 (304)
Q Consensus        48 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d  123 (304)
                      +.+.++. |..  -...+.|+  +..|+.++..  ++.|+++|+.+++.+..+ -. ...  ..+++.. ++..+..-.+
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~--~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~  115 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGH--QGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTE  115 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETT--TTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSS
T ss_pred             EEEEEEc-CCCccccceEEEE--CCEEEEEcCC--CCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccC
Confidence            3445553 332  23678886  3455554432  788999999999887776 22 233  3355543 3444555578


Q ss_pred             CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC
Q 036585          124 RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF  203 (304)
Q Consensus       124 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  203 (304)
                      +.+.+||.++.+.+..+....                              .  ...+.++++.|+.+..++.|.++|..
T Consensus       116 ~~v~V~D~~Tl~~~~ti~~~~------------------------------e--GwGLt~Dg~~L~vSdGs~~l~~iDp~  163 (268)
T 3nok_A          116 GLLFTWSGMPPQRERTTRYSG------------------------------E--GWGLCYWNGKLVRSDGGTMLTFHEPD  163 (268)
T ss_dssp             CEEEEEETTTTEEEEEEECSS------------------------------C--CCCEEEETTEEEEECSSSEEEEECTT
T ss_pred             CEEEEEECCcCcEEEEEeCCC------------------------------c--eeEEecCCCEEEEECCCCEEEEEcCC
Confidence            999999999999888776321                              1  12333578888888789999999999


Q ss_pred             CCceeEEEEeCCC--CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeecc-------------CCCCceEEe
Q 036585          204 RGTLLSTYNVKPV--SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF-------------DTEPPVIKW  268 (304)
Q Consensus       204 ~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~i~~~~~  268 (304)
                      +.+.+.++.....  .-..++.+.|. +|+..+..-.++.|.+.|.++++.+..+...             ....+.|+|
T Consensus       164 T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~  242 (268)
T 3nok_A          164 GFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAV  242 (268)
T ss_dssp             TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEE
T ss_pred             CCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEE
Confidence            9999988874221  11244667776 7765555556789999999999988777422             135689999


Q ss_pred             CCCCcEEEEecCc-eEEeccCC
Q 036585          269 APGSLMFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       269 ~~~~~~l~s~~~d-~~iw~~~~  289 (304)
                      +|+++.|+..+.. =++|.+.+
T Consensus       243 dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          243 EPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             CTTTCCEEEEETTCSEEEEEEE
T ss_pred             cCCCCEEEEeCCCCCceEEEEE
Confidence            9998888877777 56665443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.34  E-value=3.7e-10  Score=90.06  Aligned_cols=198  Identities=9%  Similarity=0.006  Sum_probs=132.4

Q ss_pred             EEEccCCCeEEEEecC--CCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcc----------cCCeEEEEe
Q 036585           63 VCFTSHPTTVIYSSKN--GWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGS----------LDRTVLLWD  130 (304)
Q Consensus        63 ~~~~~~~~~l~~~~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd  130 (304)
                      ....|+++.+++....  ..++.|.++|..+++.+..+..-..+ . +.++|++++++++.          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            4557899998888752  11579999999999988888754445 4 99999999887765          367899999


Q ss_pred             CCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC--CCeEEEEEcCCCcee
Q 036585          131 QRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM--EGHIHVLDSFRGTLL  208 (304)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~  208 (304)
                      ..+.+....+........                      ........++|+|||++++++..  ++.|.++|+.+++.+
T Consensus       116 ~~t~~v~~~I~v~~g~r~----------------------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv  173 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRF----------------------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK  173 (386)
T ss_dssp             TTTCCEEEEEEETTCCCC----------------------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             CCCCeEEEEEECCCcccc----------------------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence            999988877764320000                      00124566999999999998864  689999999999999


Q ss_pred             EEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC-Cceeeeeecc----CCCC-ceEEeC-CCCcEEEEecCc
Q 036585          209 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS-GKEVASWMSF----DTEP-PVIKWA-PGSLMFVTGSSE  281 (304)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~----~~~i-~~~~~~-~~~~~l~s~~~d  281 (304)
                      .++...    +.  ...+....+.+++.+.||.+.+.++.+ ++.......+    ..++ ....|. ++|++++.....
T Consensus       174 ~tI~v~----g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g  247 (386)
T 3sjl_D          174 RMLDVP----DC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTG  247 (386)
T ss_dssp             EEEECC----SE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTS
T ss_pred             EEEECC----Cc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCC
Confidence            998732    11  223333445666777788888888865 5542211111    1222 124563 688765544433


Q ss_pred             -eEEeccCCc
Q 036585          282 -LSFWIPDLS  290 (304)
Q Consensus       282 -~~iw~~~~~  290 (304)
                       +.+.+....
T Consensus       248 ~V~v~d~~~~  257 (386)
T 3sjl_D          248 KIHQIDLSSG  257 (386)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEECCCC
Confidence             666766544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.34  E-value=4.1e-10  Score=84.11  Aligned_cols=180  Identities=9%  Similarity=0.028  Sum_probs=126.3

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccE
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRV  105 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v  105 (304)
                      ++.++++.+.+|.|+++|+++++.+..+ ... ........++++.|+.....  ++.+.+||..+.+.+.++... ..-
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~--~~~v~V~D~~Tl~~~~ti~~~-~eG  138 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWT--EGLLFTWSGMPPQRERTTRYS-GEG  138 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESS--SCEEEEEETTTTEEEEEEECS-SCC
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEcc--CCEEEEEECCcCcEEEEEeCC-Cce
Confidence            4667778888899999999999998887 332 33333334456666666543  899999999999998888742 222


Q ss_pred             EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC
Q 036585          106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG  185 (304)
Q Consensus       106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  185 (304)
                      ..++  ++++.|+.+..++.|.++|.++.+....+.......                        ....++.+.|. +|
T Consensus       139 wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~------------------------~v~~lNeLe~~-dG  191 (268)
T 3nok_A          139 WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ------------------------PVELINELECA-NG  191 (268)
T ss_dssp             CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE------------------------ECCCEEEEEEE-TT
T ss_pred             eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc------------------------ccccccccEEe-CC
Confidence            3444  567777777778999999999988877766432110                        11244667776 77


Q ss_pred             cEEEEeeCCCeEEEEEcCCCceeEEEEeC----------CCCCCcceEEEEcCCCcEEEEec
Q 036585          186 RLMLLTTMEGHIHVLDSFRGTLLSTYNVK----------PVSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       186 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----------~~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                      +.++..-.+..|.+.|.++++.+..+...          .....-.+.++|+|+++.|+..+
T Consensus       192 ~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          192 VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            65555556889999999999999998842          11224568899999766555444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.32  E-value=2.4e-13  Score=109.51  Aligned_cols=181  Identities=13%  Similarity=0.105  Sum_probs=98.2

Q ss_pred             CCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccce
Q 036585           68 HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPA  147 (304)
Q Consensus        68 ~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  147 (304)
                      ++..+++++.   |+.|+.||..+|+.+..+..  +.+.+..+..++..+++++.|+.|+.||.++++............
T Consensus         8 ~~~~v~~gs~---dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTL---DGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEET---TSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred             eCCEEEEEcC---CCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence            5778888887   99999999999998877765  455555556677788888899999999998887654432110000


Q ss_pred             eEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc
Q 036585          148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS  227 (304)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s  227 (304)
                      .                       ...+    .+. ++..+++++.++.++.||.++|+.+..+..   +.    ...++
T Consensus        83 ~-----------------------~~sp----~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~----~~~~~  127 (369)
T 2hz6_A           83 V-----------------------QASP----CRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF----ADSLS  127 (369)
T ss_dssp             H-----------------------TTCS----CC------CCCCEEEEEEEEECCC------------------------
T ss_pred             c-----------------------ccCc----eEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC----ccccc
Confidence            0                       0011    111 344677888899999999999998877763   21    23567


Q ss_pred             CCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCC---cEEEEecCc--eEEeccCCc
Q 036585          228 PEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS---LMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       228 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s~~~d--~~iw~~~~~  290 (304)
                      |++..+++++.|+.|+.||.++++.+..+..+.  .....+.++.   ..+++++.+  +..|+.+..
T Consensus       128 p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG  193 (369)
T 2hz6_A          128 PSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG  193 (369)
T ss_dssp             -----EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred             ccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence            788899999999999999999998876654322  1223344432   344555555  666665433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.30  E-value=4.3e-09  Score=77.99  Aligned_cols=206  Identities=11%  Similarity=0.014  Sum_probs=137.0

Q ss_pred             ceeeeecccc--cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc-EEEEEEcCCCCEEEEcccCC
Q 036585           48 TCLKTINSKK--YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR-VVLLSLCSSKDCFISGSLDR  124 (304)
Q Consensus        48 ~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg  124 (304)
                      +.+.++ .|.  .-...+.|++  ..|+.++.......|+.+|+.+++.+..+.-.... -..+++. +++.....-.++
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~   85 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSS
T ss_pred             EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCC
Confidence            344555 343  3456888875  34444443101359999999999988776533221 1233443 233444455789


Q ss_pred             eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC
Q 036585          125 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR  204 (304)
Q Consensus       125 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  204 (304)
                      .+.+||.++.+.+..+....                                ....+.++++.|+++..++.|.++|..+
T Consensus        86 ~v~v~D~~tl~~~~ti~~~~--------------------------------~Gwglt~dg~~L~vSdgs~~l~~iDp~t  133 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYPG--------------------------------EGWALTSDDSHLYMSDGTAVIRKLDPDT  133 (243)
T ss_dssp             EEEEEETTTTEEEEEEECSS--------------------------------CCCEEEECSSCEEEECSSSEEEEECTTT
T ss_pred             EEEEEECCcCcEEEEEeCCC--------------------------------CceEEeeCCCEEEEECCCCeEEEEeCCC
Confidence            99999999999888776331                                1133446777777777789999999999


Q ss_pred             CceeEEEEeCCC--CCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeecc-------------CCCCceEEeC
Q 036585          205 GTLLSTYNVKPV--SRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF-------------DTEPPVIKWA  269 (304)
Q Consensus       205 ~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~i~~~~~~  269 (304)
                      .+.+.++.....  .-..++.+.+. +|+..+..-.+..|.+.|.++++.+..+...             ....+.|+++
T Consensus       134 ~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d  212 (243)
T 3mbr_X          134 LQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFD  212 (243)
T ss_dssp             CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEE
T ss_pred             CeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEc
Confidence            999888874210  11345566665 6665555546778999999999988776422             1245889999


Q ss_pred             CCCcEEEEecCc-eEEeccCCc
Q 036585          270 PGSLMFVTGSSE-LSFWIPDLS  290 (304)
Q Consensus       270 ~~~~~l~s~~~d-~~iw~~~~~  290 (304)
                      |+++.|+..+.. =++|.+.+.
T Consensus       213 ~~~~~lfVTGK~wp~~~~v~~~  234 (243)
T 3mbr_X          213 AEHDRLFVTGKRWPMLYEIRLT  234 (243)
T ss_dssp             TTTTEEEEEETTCSEEEEEEEC
T ss_pred             CCCCEEEEECCCCCcEEEEEEe
Confidence            998888888887 667666543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.30  E-value=4.2e-09  Score=78.04  Aligned_cols=184  Identities=11%  Similarity=0.105  Sum_probs=125.1

Q ss_pred             eecccCcEEEEeeCCC--eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           22 QSMEVGIYLVTASDDE--SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        22 ~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      .+.. +.++.+.+.+|  .|+++|+++++.+..+.... ........+.++.|+.....  ++.+.+||..+.+.+.++.
T Consensus        27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~--~~~v~v~D~~tl~~~~ti~  102 (243)
T 3mbr_X           27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWR--NHEGFVYDLATLTPRARFR  102 (243)
T ss_dssp             EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESS--SSEEEEEETTTTEEEEEEE
T ss_pred             EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEee--CCEEEEEECCcCcEEEEEe
Confidence            4443 56666666654  89999999999998876543 22223333356666666543  8999999999999888887


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV  179 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  179 (304)
                      .... -..++  +++..|+.+..++.|.++|.++.+....+.......                        ....++.+
T Consensus       103 ~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~------------------------~~~~lNeL  155 (243)
T 3mbr_X          103 YPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR------------------------PLDNLNEL  155 (243)
T ss_dssp             CSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE------------------------ECCCEEEE
T ss_pred             CCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc------------------------ccccceee
Confidence            4332 23444  466666666668899999999988877765432110                        11244566


Q ss_pred             EEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC----------CCCCcceEEEEcCCCcEEEEec
Q 036585          180 KFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP----------VSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       180 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----------~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                      .+. +|+.++..-.+..|.+.|.++++.+..+....          ....-.+.++++|+++.|+..+
T Consensus       156 e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          156 EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            665 67655555567899999999999999988431          1223568899999776665554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.30  E-value=2e-08  Score=77.01  Aligned_cols=225  Identities=9%  Similarity=-0.040  Sum_probs=135.7

Q ss_pred             CcEEEEeeCCCeEEEEecCCccee-----eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccc
Q 036585           27 GIYLVTASDDESIRLYDVTAATCL-----KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH  101 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~  101 (304)
                      |.+|+.+.. +.|+.+++......     ..+......+..++|++++..|+.+...  ++.|..+++........+...
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~~~~~~   77 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS--EPSIGRASLHGGEPTTIIRQD   77 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT--TTEEEEEESSSCCCEEEECTT
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC--CCEEEEEecCCCCcEEEEECC
Confidence            455666654 47888888754321     1222233467899999988777777653  789999998766543333222


Q ss_pred             cccEEEEEEcCCCCEEE-EcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEE
Q 036585          102 HDRVVLLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVK  180 (304)
Q Consensus       102 ~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  180 (304)
                      ......+++.|++..++ +-...+.|.++++...... .+. .                           ........++
T Consensus        78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~-~---------------------------~~~~~P~~i~  128 (267)
T 1npe_A           78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLF-D---------------------------TGLVNPRGIV  128 (267)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-C---------------------------SSCSSEEEEE
T ss_pred             CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-EEE-E---------------------------CCCCCccEEE
Confidence            34678999999655544 4455678999887643211 111 0                           0113457899


Q ss_pred             EecCCcEEEEeeC---CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecCCCceeeee
Q 036585          181 FSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       181 ~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~  256 (304)
                      ++|++..|+++..   .+.|..+++.. +....+..  ........++++|++..|+.+ ...+.|.++|+........+
T Consensus       129 vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~  205 (267)
T 1npe_A          129 TDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL  205 (267)
T ss_dssp             EETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE
T ss_pred             EeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe
Confidence            9997665655543   46888888753 33333321  123457789999987766555 45678999998754433333


Q ss_pred             eccCCCCceEEeCCCCcEEEEecCc---eEEeccCC
Q 036585          257 MSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPDL  289 (304)
Q Consensus       257 ~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~  289 (304)
                      .. ......++..  +..|+.+...   +..++.+.
T Consensus       206 ~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          206 EG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             EC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             cC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCC
Confidence            32 2334567654  3444444433   66666654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.22  E-value=5.4e-09  Score=83.41  Aligned_cols=203  Identities=8%  Similarity=-0.087  Sum_probs=124.7

Q ss_pred             ceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcc----------cCCeEEEEeCCcceeeceEEEe---------
Q 036585           83 SLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGS----------LDRTVLLWDQRAEKCQGLLRVQ---------  143 (304)
Q Consensus        83 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~---------  143 (304)
                      .|.++|..+++.+..+..-..+  .+.++|++++++++.          .++.|.+||+.+.+....+...         
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7889999999998888755555  799999999888875          4688999999999999888764         


Q ss_pred             ccceeEecCCCe-EEEec---CCCeEE--EEecCCCCCceEE------EEecCCc-EEEEeeCC----------------
Q 036585          144 GRPAAAYDDQGL-VFGYE---KGPLDI--FSVGGDISDANVV------KFSNDGR-LMLLTTME----------------  194 (304)
Q Consensus       144 ~~~~~~~~~~~~-~~~~~---~~~~~~--~~~~~~~~~v~~~------~~~~~~~-~l~~~~~d----------------  194 (304)
                      ....+.+++++. ++...   ...+.+  ++...    +..+      .+.|+++ .+++.+.|                
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~  200 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAG  200 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence            244677888873 22222   233444  33211    1111      0112221 12222233                


Q ss_pred             ------------------------------CeEEEEEcCCCc--eeEEEEeCC------C-CCCcceEEEEcCCCcEEEE
Q 036585          195 ------------------------------GHIHVLDSFRGT--LLSTYNVKP------V-SRNSTLEASFSPEGMFVIS  235 (304)
Q Consensus       195 ------------------------------g~i~~~d~~~~~--~~~~~~~~~------~-~~~~i~~~~~s~~~~~l~~  235 (304)
                                                    +.+.+.|+.+..  ....+....      . .......++++||++.++.
T Consensus       201 ~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV  280 (368)
T 1mda_H          201 IVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             eEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence                                          444444443221  111111000      0 0011112689999998886


Q ss_pred             ecC---------CCcEEEEecCCCceeeeeeccCCCCceEEeCCCCc-EEEEec--Cc-eEEeccCCccc
Q 036585          236 GSG---------DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL-MFVTGS--SE-LSFWIPDLSKL  292 (304)
Q Consensus       236 ~~~---------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~--~d-~~iw~~~~~~~  292 (304)
                      +..         ++.+.++|+.+.+.+..+.... ....++|+||++ .+++..  .+ +.++|....++
T Consensus       281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             EeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence            533         2356799999999988886544 578999999997 445544  23 99999876554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.16  E-value=1.1e-08  Score=88.64  Aligned_cols=245  Identities=14%  Similarity=0.110  Sum_probs=149.6

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeeccccc-ceeEEEEcc--CCCeEEEEecC---CCCCceEEEEccCceeeeecc
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKY-GVDLVCFTS--HPTTVIYSSKN---GWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~~~~~~---~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      .+..++.++.|+.|..+|..+++.+-++..... ....+..+|  .+..++++...   +.++.|..+|..+++.+..+.
T Consensus       116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            356788888999999999999998876654210 000011111  24456655431   125899999999998776653


Q ss_pred             cc---c----------------------------ccEEEEEEcCCCCEEEEcccCCe-------------------EEEE
Q 036585          100 GH---H----------------------------DRVVLLSLCSSKDCFISGSLDRT-------------------VLLW  129 (304)
Q Consensus       100 ~~---~----------------------------~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iw  129 (304)
                      ..   .                            .....+++.|+...++.++.++.                   |..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            21   0                            01123677787788888876663                   8888


Q ss_pred             eCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCc---EEEEeeCCCeEEEEEcCCCc
Q 036585          130 DQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGR---LMLLTTMEGHIHVLDSFRGT  206 (304)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~~~d~~~~~  206 (304)
                      |.++++....+.........++                    ...+.....+..+|+   .+++++.+|.++++|..+|+
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~--------------------~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFT--------------------ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCC--------------------CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cCCCCceeeEeecCCCcccccc--------------------CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence            8888887766653211100000                    001222223334665   68889999999999999999


Q ss_pred             eeEEEEeCCC---------CCCc------------------------ceEEEEcCCCcEEEEe-----------------
Q 036585          207 LLSTYNVKPV---------SRNS------------------------TLEASFSPEGMFVISG-----------------  236 (304)
Q Consensus       207 ~~~~~~~~~~---------~~~~------------------------i~~~~~s~~~~~l~~~-----------------  236 (304)
                      .+........         ...+                        -..++++|+...++..                 
T Consensus       336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~  415 (668)
T 1kv9_A          336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT  415 (668)
T ss_dssp             EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred             EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence            8865542210         0000                        0126788876665541                 


Q ss_pred             -------------------cCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          237 -------------------SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       237 -------------------~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                                         ..+|.|..||+.+++.+.+...+ .+.....+...+.+++.++.|  ++.|+.+..+
T Consensus       416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence                               13478999999999987776543 334444455567777778777  7777776443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.16  E-value=5e-08  Score=84.62  Aligned_cols=259  Identities=10%  Similarity=0.089  Sum_probs=145.4

Q ss_pred             eEeecc-cCcEEEEeeCCC-----------eEEEEecCCcceee--eecc-cccceeEEEEccCCCeEEEEecCCCCCce
Q 036585           20 ILQSME-VGIYLVTASDDE-----------SIRLYDVTAATCLK--TINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESL   84 (304)
Q Consensus        20 ~i~~~~-~~~~l~~~~~d~-----------~i~vw~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i   84 (304)
                      ...+.+ +|++++.|+.+.           .+.+||..+++-..  .+.. +.....++++.++++.+++|+..  +..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~--~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND--AKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS--TTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC--CCce
Confidence            345555 888999887543           58899988765322  2221 22234457788899999999863  5689


Q ss_pred             EEEEccCceeeeeccccccc-EEEEEEcCCCCEEEEcc-cC-----CeEEEEeCCcceeece-------EEEeccc-eeE
Q 036585           85 RLLSLHDNKYSRYFKGHHDR-VVLLSLCSSKDCFISGS-LD-----RTVLLWDQRAEKCQGL-------LRVQGRP-AAA  149 (304)
Q Consensus        85 ~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~-------~~~~~~~-~~~  149 (304)
                      .+||..+++....-..+... -.++...++++.++.|+ .+     ..+.+||..+.+....       +...... ...
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~  347 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  347 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence            99999887643322111111 13455667899999888 34     4689999987654321       0000000 000


Q ss_pred             ecCCCeEEEecC---------CCeEEEEecCCC------------------CCceEEEEec-CCcEEEEeeCCC------
Q 036585          150 YDDQGLVFGYEK---------GPLDIFSVGGDI------------------SDANVVKFSN-DGRLMLLTTMEG------  195 (304)
Q Consensus       150 ~~~~~~~~~~~~---------~~~~~~~~~~~~------------------~~v~~~~~~~-~~~~l~~~~~dg------  195 (304)
                      ....-.+++..+         ..+..|+.....                  ..-.++.|.. +++.+++|+.++      
T Consensus       348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~  427 (656)
T 1k3i_A          348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA  427 (656)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred             cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence            111112222222         223333332211                  1123344433 678888887543      


Q ss_pred             -----eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-----------CcEEEEecCCCcee--eeee
Q 036585          196 -----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----------GSVHAWSVRSGKEV--ASWM  257 (304)
Q Consensus       196 -----~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------g~i~v~d~~~~~~~--~~~~  257 (304)
                           .+.+||..+.+..............-.+++..|+++.++.|+.+           ..+.+||..+.+-.  ..+.
T Consensus       428 ~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~  507 (656)
T 1k3i_A          428 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS  507 (656)
T ss_dssp             CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred             CCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC
Confidence                 68888887766543320011122223345667899999998754           46899998765422  2122


Q ss_pred             ccCCCCceEEeCCCCcEEEEecC
Q 036585          258 SFDTEPPVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       258 ~~~~~i~~~~~~~~~~~l~s~~~  280 (304)
                      ..........+.|++++++.|+.
T Consensus       508 ~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          508 IVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             SCCCTTEEEEECTTSCEEEEECC
T ss_pred             CccccccHhhcCCCcEEEecCCC
Confidence            11222234556799999999885

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.15  E-value=4.6e-07  Score=70.87  Aligned_cols=234  Identities=13%  Similarity=0.007  Sum_probs=136.0

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCC-ceEEEEccCceee
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDE-SLRLLSLHDNKYS   95 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~-~i~vwd~~~~~~~   95 (304)
                      ....+.+.++|+++++-..++.|..||... +....+.. ...+..+++.++++.+++....  ++ .|..++..+++..
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~--~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNA--DSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECT--TSCEEEEEECTTSCEE
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccC--CcceEEEEcCCCCeEE
Confidence            345678888898777777889999999765 33333332 3468899999999865554321  22 4666777776643


Q ss_pred             eecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585           96 RYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS  174 (304)
Q Consensus        96 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (304)
                      .... ........++..+++..+++-..++.|+.+|...+....... ..... ...                 ......
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~-~~~~~-~~~-----------------~~~~~~  169 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLE-HPMLA-RSN-----------------SESVFP  169 (306)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEE-CGGGS-CSS-----------------TTCCSC
T ss_pred             EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEE-CCccc-ccc-----------------ccCCCC
Confidence            2221 111223444445555445554467888888876542111000 00000 000                 000112


Q ss_pred             CceEEEEecCCcEEEEe-eCCCeEEEEEcCC-Cce--eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585          175 DANVVKFSNDGRLMLLT-TMEGHIHVLDSFR-GTL--LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG  250 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~-~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~  250 (304)
                      ..+.+  +|+++.|+++ ...+.|..|++.. ++.  ...+..    ......++++++|+++++....+.|.++|.. +
T Consensus       170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G  242 (306)
T 2p4o_A          170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-R  242 (306)
T ss_dssp             SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-C
T ss_pred             cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-C
Confidence            23445  7888766655 4567999999864 332  122221    1234568999999887777677889999974 6


Q ss_pred             cee--eeeeccCCCCceEEeC---CCCcEEEEecC
Q 036585          251 KEV--ASWMSFDTEPPVIKWA---PGSLMFVTGSS  280 (304)
Q Consensus       251 ~~~--~~~~~~~~~i~~~~~~---~~~~~l~s~~~  280 (304)
                      +..  ..+......+++++|.   |++..|+.++.
T Consensus       243 ~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          243 STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            552  2333333567899998   88766655543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.15  E-value=2.5e-08  Score=86.44  Aligned_cols=236  Identities=11%  Similarity=0.116  Sum_probs=141.9

Q ss_pred             CCeEEEEecCCcceeeeecccc-------------------------------cceeEEEEccCCCeEEEEecCCCCC--
Q 036585           36 DESIRLYDVTAATCLKTINSKK-------------------------------YGVDLVCFTSHPTTVIYSSKNGWDE--   82 (304)
Q Consensus        36 d~~i~vw~~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~l~~~~~~~~d~--   82 (304)
                      +|.|..+|.++++.+-++....                               .....+++.|+...++.++.   ++  
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~---~g~~  253 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTG---NGSP  253 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECC---CEES
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCC---CCCc
Confidence            5899999999999886664210                               01124688888888888876   44  


Q ss_pred             -----------------ceEEEEccCceeeeeccc--cc-------ccEEEEEEcCCCC---EEEEcccCCeEEEEeCCc
Q 036585           83 -----------------SLRLLSLHDNKYSRYFKG--HH-------DRVVLLSLCSSKD---CFISGSLDRTVLLWDQRA  133 (304)
Q Consensus        83 -----------------~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~  133 (304)
                                       .|.-+|..+++.+..++.  |.       .+.....+..+++   .++.++.+|.++++|.++
T Consensus       254 w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t  333 (668)
T 1kv9_A          254 WNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN  333 (668)
T ss_dssp             SCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             cccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC
Confidence                             489999999998776653  21       2333333334665   688999999999999999


Q ss_pred             ceeeceEEEeccc-eeEecC-CCeEEEec----CCCeEEEEecCCC--CCceEEEEecCCcEEEEe--------------
Q 036585          134 EKCQGLLRVQGRP-AAAYDD-QGLVFGYE----KGPLDIFSVGGDI--SDANVVKFSNDGRLMLLT--------------  191 (304)
Q Consensus       134 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~----~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~--------------  191 (304)
                      ++.+........+ ...++. .+..+...    .+.- .....+..  ..-..++++|+...+++.              
T Consensus       334 G~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~-~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~  412 (668)
T 1kv9_A          334 GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEP-IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKD  412 (668)
T ss_dssp             CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSC-EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGG
T ss_pred             CCEeccccccccccccccccccCCccccccccccCCe-eEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccc
Confidence            9887554432211 001110 00000000    0000 00000000  011235566655544431              


Q ss_pred             ----------------------eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585          192 ----------------------TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       192 ----------------------~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~  249 (304)
                                            ..+|.|..||+.+++.+.++...    .+.....+...+.+++.++.|+.++.||.++
T Consensus       413 ~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t  488 (668)
T 1kv9_A          413 FVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADK  488 (668)
T ss_dssp             CCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             cccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----CCCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence                                  23488999999999998888742    2233334455677899999999999999999


Q ss_pred             CceeeeeeccCCCC-ceEEeCCCCc-EEEEec
Q 036585          250 GKEVASWMSFDTEP-PVIKWAPGSL-MFVTGS  279 (304)
Q Consensus       250 ~~~~~~~~~~~~~i-~~~~~~~~~~-~l~s~~  279 (304)
                      ++.+..+....... .-+.+..+|+ +++.++
T Consensus       489 G~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          489 GEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             CCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            99988886543221 2344445665 454444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.11  E-value=3.6e-08  Score=83.80  Aligned_cols=248  Identities=11%  Similarity=0.084  Sum_probs=142.1

Q ss_pred             CcEEEEeeC------CCeEEEEecCCcceeeeecccccc--------------------------------------eeE
Q 036585           27 GIYLVTASD------DESIRLYDVTAATCLKTINSKKYG--------------------------------------VDL   62 (304)
Q Consensus        27 ~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~--------------------------------------v~~   62 (304)
                      +..++.++.      ++.|..+|.++++.+-++......                                      ...
T Consensus       160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~  239 (571)
T 2ad6_A          160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW  239 (571)
T ss_dssp             TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred             CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence            345555554      789999999999987665432110                                      013


Q ss_pred             EEEccCCCeEEEEecCC-------------CCCceEEEEccCceeeeeccc--c--------cccEEEEEEcCCCC---E
Q 036585           63 VCFTSHPTTVIYSSKNG-------------WDESLRLLSLHDNKYSRYFKG--H--------HDRVVLLSLCSSKD---C  116 (304)
Q Consensus        63 ~~~~~~~~~l~~~~~~~-------------~d~~i~vwd~~~~~~~~~~~~--~--------~~~v~~~~~~~~~~---~  116 (304)
                      +++.+....++.+..+.             +.+.|..+|..+++.+..++.  |        ..++. +...++|+   .
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~  318 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPL  318 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEE
Confidence            56666666777765310             113689999999987766542  1        12222 23334674   5


Q ss_pred             EEEcccCCeEEEEeCCcceeeceEEEeccce--eEec-CCCeEEEecC-----CCeEEEEecCCC--CCceEEEEecCCc
Q 036585          117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPA--AAYD-DQGLVFGYEK-----GPLDIFSVGGDI--SDANVVKFSNDGR  186 (304)
Q Consensus       117 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~-----~~~~~~~~~~~~--~~v~~~~~~~~~~  186 (304)
                      ++.++.+|.+.++|.++++.+..........  ..++ ..+..+....     .........+..  ..-..++++|+..
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g  398 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR  398 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred             EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence            7788899999999999998877665432110  0000 0000000000     000000000000  0113456666655


Q ss_pred             EEEEee-------------------------------------CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC
Q 036585          187 LMLLTT-------------------------------------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE  229 (304)
Q Consensus       187 ~l~~~~-------------------------------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~  229 (304)
                      ++++..                                     .+|.|..||+.+++.+.++...    ..+....+...
T Consensus       399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~~t~  474 (571)
T 2ad6_A          399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTK  474 (571)
T ss_dssp             EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEET
T ss_pred             EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC----CCccceeEEEC
Confidence            555542                                     3578999999999998888742    22222222334


Q ss_pred             CcEEEEecCCCcEEEEecCCCceeeeeeccCCC-CceEEeCCCCcEEEEec
Q 036585          230 GMFVISGSGDGSVHAWSVRSGKEVASWMSFDTE-PPVIKWAPGSLMFVTGS  279 (304)
Q Consensus       230 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~s~~  279 (304)
                      +..++.++.|+.|+.+|.++++.+.++...... -.-+.+..+|++++...
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEE
Confidence            567788999999999999999998887643322 22344556776555433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.08  E-value=9.9e-07  Score=78.38  Aligned_cols=263  Identities=12%  Similarity=0.147  Sum_probs=159.2

Q ss_pred             ccCcEEEEeeCCCeEEEEecCCcceeeeec-ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc---
Q 036585           25 EVGIYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG---  100 (304)
Q Consensus        25 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~---  100 (304)
                      ++|++.+ ++.++-|..|+..+++...... .+...|.++...+++.. ..++.   ++-+.+||..+++.......   
T Consensus       182 ~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-wigt~---~~Gl~~~~~~~~~~~~~~~~~~~  256 (795)
T 4a2l_A          182 QGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRI-WVATE---GAGLFLINPKTKEIKNYLHSPSN  256 (795)
T ss_dssp             ETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEE-EEEEB---SSCEEEEETTTTEEEEECCCTTC
T ss_pred             CCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCE-EEEEC---CCCeEEEeCCCCeEEEeecCCCC
Confidence            4455444 5554458889987665433211 23456888888777654 44544   55588999887654332211   


Q ss_pred             ----ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEE---------eccceeEecCCCeEE-EecCCCeEE
Q 036585          101 ----HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV---------QGRPAAAYDDQGLVF-GYEKGPLDI  166 (304)
Q Consensus       101 ----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~  166 (304)
                          ....|.++...+++.+.+. +.+ -|.+||..++........         .....+..+.++.+. +...+.+..
T Consensus       257 ~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~  334 (795)
T 4a2l_A          257 PKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNY  334 (795)
T ss_dssp             TTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEE
T ss_pred             ccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEE
Confidence                2357999999888875554 444 488899876654322111         111234455555444 444455655


Q ss_pred             EEecC---------------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC-----CCCCCcceEEEE
Q 036585          167 FSVGG---------------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-----PVSRNSTLEASF  226 (304)
Q Consensus       167 ~~~~~---------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-----~~~~~~i~~~~~  226 (304)
                      ++...               ....|.++...++|. |.+|+.++-|..||..+++........     ......|.+++.
T Consensus       335 ~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~  413 (795)
T 4a2l_A          335 YHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV  413 (795)
T ss_dssp             ECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred             eCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence            54321               124578888888887 666888878999998776543321110     012467889999


Q ss_pred             cCCCcEEEEecCCCcEEEEecCCCceeeeee----ccCCCCceEEeCCCCcEEEEecCceEEeccCCcccccc
Q 036585          227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWM----SFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAY  295 (304)
Q Consensus       227 s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~~~~~  295 (304)
                      .++++.|..|+.++-|..||.++++...-..    .....|.++...++|.+.+.....+.+|+.+..++..+
T Consensus       414 d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~  486 (795)
T 4a2l_A          414 DEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTI  486 (795)
T ss_dssp             ETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEEC
T ss_pred             cCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEc
Confidence            8888856667666679999988765432211    13456889998888887666554488888766555443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.06  E-value=5.5e-07  Score=67.70  Aligned_cols=211  Identities=8%  Similarity=0.108  Sum_probs=133.1

Q ss_pred             eecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc-ccccEEEEEEcCCCCEEEEcccCCeEEEEe
Q 036585           52 TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG-HHDRVVLLSLCSSKDCFISGSLDRTVLLWD  130 (304)
Q Consensus        52 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  130 (304)
                      .+.+-...+..++++|++..|++....  ++.|...|.. ++..+.+.- -......+++.+++.++++.-.++.+.+++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~--~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINK--PAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEET--TEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECC--CCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence            344555579999999998888876653  8889999987 776666531 124678889998888777766778899998


Q ss_pred             CCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC---CCce
Q 036585          131 QRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF---RGTL  207 (304)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~~  207 (304)
                      +.................                    ..........++|+|.++.|+++.......+|.++   ....
T Consensus        98 v~~~~~i~~~~~~~~~~~--------------------~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~  157 (255)
T 3qqz_A           98 LTPNSEVKILKKIKIPLQ--------------------ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE  157 (255)
T ss_dssp             ECTTCCEEEEEEEECCCS--------------------SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred             cCCCCeeeeeeeeccccc--------------------cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence            766543222111100000                    00234557899999999777777766555555543   1111


Q ss_pred             eEEEEe----CCCCCCcceEEEEcCC-CcEEEEecCCCcEEEEecCCCceeeeeeccC---------CCCceEEeCCCCc
Q 036585          208 LSTYNV----KPVSRNSTLEASFSPE-GMFVISGSGDGSVHAWSVRSGKEVASWMSFD---------TEPPVIKWAPGSL  273 (304)
Q Consensus       208 ~~~~~~----~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~  273 (304)
                      +.....    .......+.+++++|. +++++.....+.+.++|.+ ++.+..+.-..         ...-.|+|.++|+
T Consensus       158 l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~  236 (255)
T 3qqz_A          158 LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN  236 (255)
T ss_dssp             CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred             eeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence            222211    0112345788999995 4556666677889999964 56655543221         2457899999998


Q ss_pred             EEEEecCceEEecc
Q 036585          274 MFVTGSSELSFWIP  287 (304)
Q Consensus       274 ~l~s~~~d~~iw~~  287 (304)
                      +.++ ++.-.+|.+
T Consensus       237 lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          237 IYIV-SEPNRFYRF  249 (255)
T ss_dssp             EEEE-ETTTEEEEE
T ss_pred             EEEE-cCCceEEEE
Confidence            6555 444455554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.06  E-value=9e-08  Score=75.51  Aligned_cols=202  Identities=11%  Similarity=0.030  Sum_probs=123.5

Q ss_pred             ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc--------------------cccccEEEEEEcC-CCCEE
Q 036585           59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK--------------------GHHDRVVLLSLCS-SKDCF  117 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~~~l  117 (304)
                      ....+++.++++.++++..   ++.|..|+..+++.. .+.                    .....+..+++.+ +++ |
T Consensus        20 ~p~~i~~d~~g~~l~v~~~---~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l   94 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQ---DGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-L   94 (322)
T ss_dssp             CCCCEECCTTCSSEEEECT---TSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-E
T ss_pred             CceEEEEcCCCCEEEEEcC---CCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-E
Confidence            4567899999887888876   889999988765432 111                    0123578899997 564 5


Q ss_pred             EEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec-CCcEEEEeeC---
Q 036585          118 ISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN-DGRLMLLTTM---  193 (304)
Q Consensus       118 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~---  193 (304)
                      +.+...+.+..+|..++...........                         ......+.+++.+ +|++.++-..   
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~-------------------------~~~~~p~~i~~d~~~G~l~v~d~~~~~  149 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLATSVDG-------------------------VPFKWLYAVTVDQRTGIVYFTDVSTLY  149 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEESEETT-------------------------EECSCEEEEEECTTTCCEEEEESCSSC
T ss_pred             EEEECCCCEEEEeCCCCEEEEecccCCC-------------------------CcccccceEEEecCCCEEEEECCcccc
Confidence            5554445588888765432211100000                         0112356788888 8876555322   


Q ss_pred             --------------CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecCCCc--eeeee
Q 036585          194 --------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVRSGK--EVASW  256 (304)
Q Consensus       194 --------------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~--~~~~~  256 (304)
                                    +|.|..||..+++......    .......++++|++++|+.+ ..++.|.+|++....  ....+
T Consensus       150 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~----~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~  225 (322)
T 2fp8_A          150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK----ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL  225 (322)
T ss_dssp             CTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE----EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE
T ss_pred             cccccceehcccCCCceEEEEeCCCCEEEEecc----CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE
Confidence                          3679999987776443322    12344579999999876655 556889999987421  11222


Q ss_pred             eccCCCCceEEeCCCCcEEEEecC----------c--eEEeccCCcccccc
Q 036585          257 MSFDTEPPVIKWAPGSLMFVTGSS----------E--LSFWIPDLSKLGAY  295 (304)
Q Consensus       257 ~~~~~~i~~~~~~~~~~~l~s~~~----------d--~~iw~~~~~~~~~~  295 (304)
                      ....+ ...+++.++|++.++...          .  +..++.+.+.+..+
T Consensus       226 ~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~  275 (322)
T 2fp8_A          226 VKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVI  275 (322)
T ss_dssp             EECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEE
T ss_pred             EeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEE
Confidence            21223 788999999987766544          2  55666655544443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.04  E-value=2.8e-07  Score=78.34  Aligned_cols=257  Identities=13%  Similarity=0.113  Sum_probs=149.9

Q ss_pred             CcEEEEeeC-CCeEEEEec-CCcceeeeeccccc-ce----------eEEEEccCCCeEEEEecCCCCCceEEEEccCce
Q 036585           27 GIYLVTASD-DESIRLYDV-TAATCLKTINSKKY-GV----------DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   93 (304)
Q Consensus        27 ~~~l~~~~~-d~~i~vw~~-~~~~~~~~~~~~~~-~v----------~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~   93 (304)
                      +..++.++. ++.|.-+|. .+++.+-++..... .+          ..++.  .+..+++++.   |+.+..+|..+++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~---dg~l~alD~~tG~  136 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA---NGHLLALDAKTGK  136 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT---TSEEEEEETTTCC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC---CCEEEEEECCCCC
Confidence            556666777 889999999 89998766543221 00          11222  4667788877   9999999999998


Q ss_pred             eeeeccccc--c--cEEE-EEEcCCCCEEEEccc------CCeEEEEeCCcceeeceEEEeccc----------------
Q 036585           94 YSRYFKGHH--D--RVVL-LSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLRVQGRP----------------  146 (304)
Q Consensus        94 ~~~~~~~~~--~--~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~----------------  146 (304)
                      .+.......  .  .+.+ .... ++ .++.++.      ++.|..+|.++++.+..+......                
T Consensus       137 ~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~  214 (571)
T 2ad6_A          137 INWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY  214 (571)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             EEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence            776544211  0  1111 1111 34 4555544      799999999999988776543211                


Q ss_pred             ------------------------eeEecCC-CeEE-------------------------Eec-CCCeEEEEecCCC--
Q 036585          147 ------------------------AAAYDDQ-GLVF-------------------------GYE-KGPLDIFSVGGDI--  173 (304)
Q Consensus       147 ------------------------~~~~~~~-~~~~-------------------------~~~-~~~~~~~~~~~~~--  173 (304)
                                              ..++++. +.++                         ..+ .....+|..+...  
T Consensus       215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d  294 (571)
T 2ad6_A          215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD  294 (571)
T ss_dssp             CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred             cccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCc
Confidence                                    1222221 2221                         111 1222334443211  


Q ss_pred             -------CCceEEEEecCCc---EEEEeeCCCeEEEEEcCCCceeEEEEeCCCC----------CCcc------------
Q 036585          174 -------SDANVVKFSNDGR---LMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS----------RNST------------  221 (304)
Q Consensus       174 -------~~v~~~~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~----------~~~i------------  221 (304)
                             ....-+...++|+   .++.++.+|.++++|..+++.+..+......          ..++            
T Consensus       295 ~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~  374 (571)
T 2ad6_A          295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHK  374 (571)
T ss_dssp             SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCC
T ss_pred             ccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCC
Confidence                   0111122234674   5777889999999999999998877642200          0111            


Q ss_pred             --------------eEEEEcCCCcEEEEec-------------------------------------CCCcEEEEecCCC
Q 036585          222 --------------LEASFSPEGMFVISGS-------------------------------------GDGSVHAWSVRSG  250 (304)
Q Consensus       222 --------------~~~~~s~~~~~l~~~~-------------------------------------~dg~i~v~d~~~~  250 (304)
                                    ..++++|+..+++...                                     .+|.|..||+.++
T Consensus       375 ~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG  454 (571)
T 2ad6_A          375 GTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG  454 (571)
T ss_dssp             EEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC
T ss_pred             ceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCC
Confidence                          2357888877776643                                     3578999999999


Q ss_pred             ceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          251 KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       251 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      +.+.++... .++....+...+..++.++.|  +..++....+
T Consensus       455 ~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          455 KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence            987776533 333333333344556667766  6666654433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.04  E-value=3.6e-07  Score=77.79  Aligned_cols=112  Identities=8%  Similarity=0.022  Sum_probs=73.2

Q ss_pred             CcEEEEeeC-CCeEEEEec-CCcceeeeecccccc-----------eeEEEEccCCCe----EEEEecCCCCCceEEEEc
Q 036585           27 GIYLVTASD-DESIRLYDV-TAATCLKTINSKKYG-----------VDLVCFTSHPTT----VIYSSKNGWDESLRLLSL   89 (304)
Q Consensus        27 ~~~l~~~~~-d~~i~vw~~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~~~~~~d~~i~vwd~   89 (304)
                      +..+++++. ++.|.-+|. .+++.+-++......           ...++++|.+..    +++++.   |+.|.-+|.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~---dg~l~AlDa  138 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL---DGNVAALNA  138 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---TSEEEEEET
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---CCEEEEEEC
Confidence            566777777 889999999 899988666532210           123455444445    888877   999999999


Q ss_pred             cCceeeeeccccc----ccEEE-EEEcCCCCEEEEcc------cCCeEEEEeCCcceeeceEEEe
Q 036585           90 HDNKYSRYFKGHH----DRVVL-LSLCSSKDCFISGS------LDRTVLLWDQRAEKCQGLLRVQ  143 (304)
Q Consensus        90 ~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~  143 (304)
                      .+|+.+.......    ..+.+ ..+. ++ .++.++      .++.|+.+|.++++.+..+...
T Consensus       139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          139 ETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             TTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             CCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            9998776543211    01111 1111 34 455554      3799999999999988776643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.03  E-value=1.2e-07  Score=80.75  Aligned_cols=245  Identities=15%  Similarity=0.162  Sum_probs=140.3

Q ss_pred             EEEEee------CCCeEEEEecCCcceeeeecccccc-----------------------------------------ee
Q 036585           29 YLVTAS------DDESIRLYDVTAATCLKTINSKKYG-----------------------------------------VD   61 (304)
Q Consensus        29 ~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~~~-----------------------------------------v~   61 (304)
                      .+++++      .++.|..+|..+++.+-........                                         -.
T Consensus       170 ~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~  249 (582)
T 1flg_A          170 LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQ  249 (582)
T ss_dssp             EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCS
T ss_pred             EEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccC
Confidence            566654      3789999999999877554321000                                         01


Q ss_pred             EEEEccCCCeEEEEecC---------------------CCCCceEEEEccCceeeeeccc--cc--------ccEEEEEE
Q 036585           62 LVCFTSHPTTVIYSSKN---------------------GWDESLRLLSLHDNKYSRYFKG--HH--------DRVVLLSL  110 (304)
Q Consensus        62 ~~~~~~~~~~l~~~~~~---------------------~~d~~i~vwd~~~~~~~~~~~~--~~--------~~v~~~~~  110 (304)
                      .+++.|....++++..+                     .+.+.|.-+|..+++.+..++.  |.        .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            34566677777776631                     0126899999999998776642  21        2222 222


Q ss_pred             c-CCCC---EEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecC-CCeEEEecC-----------CCeEEEEecCC
Q 036585          111 C-SSKD---CFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDD-QGLVFGYEK-----------GPLDIFSVGGD  172 (304)
Q Consensus       111 ~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~-----------~~~~~~~~~~~  172 (304)
                      . .+|+   .++.++.+|.++++|.++++.+..+......  ...++. .+..+....           ...........
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            2 4664   7888999999999999999988766543211  000110 011000000           00000000000


Q ss_pred             C--CCceEEEEecCCcEEEEee---------------------------------CCCeEEEEEcCCCceeEEEEeCCCC
Q 036585          173 I--SDANVVKFSNDGRLMLLTT---------------------------------MEGHIHVLDSFRGTLLSTYNVKPVS  217 (304)
Q Consensus       173 ~--~~v~~~~~~~~~~~l~~~~---------------------------------~dg~i~~~d~~~~~~~~~~~~~~~~  217 (304)
                      .  ..-..++++|+...+++..                                 .+|.|.-||+.+++.+.+.....  
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--  486 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--  486 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--
Confidence            0  0012344555444333321                                 36889999999999988877421  


Q ss_pred             CCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCC-ceEEeCCCCc-EEEEe
Q 036585          218 RNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP-PVIKWAPGSL-MFVTG  278 (304)
Q Consensus       218 ~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i-~~~~~~~~~~-~l~s~  278 (304)
                        +...-.....+.+++.++.|+.++.||.++++.+.+++...+.. .-+.|..+|+ |+++.
T Consensus       487 --~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          487 --PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             --CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             --CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence              22111122246678889999999999999999998886544322 2366767876 44433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.00  E-value=1.3e-06  Score=70.55  Aligned_cols=206  Identities=10%  Similarity=-0.048  Sum_probs=123.1

Q ss_pred             cEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEE
Q 036585           28 IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVL  107 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  107 (304)
                      .+|+.+.. ..|+..++........+.. ...+..++|.+....|+.+...  .+.|..+++........+.........
T Consensus        88 ~~l~~~~~-~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~--~~~I~r~~~~g~~~~~~~~~~~~~p~g  163 (386)
T 3v65_B           88 PVLLFANR-IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVT--LDRILRANLNGSNVEEVVSTGLESPGG  163 (386)
T ss_dssp             CEEEEECB-SCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCCEEEEECSSCSCCCC
T ss_pred             ceeEeecC-ccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCC--CCcEEEEecCCCCcEEEEeCCCCCccE
Confidence            34444433 4688888876554443433 3457899999877777766543  788999998876543333322234466


Q ss_pred             EEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCc
Q 036585          108 LSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGR  186 (304)
Q Consensus       108 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (304)
                      +++.+.+. ++++-...+.|.+.++........+                             .........++++|.+.
T Consensus       164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~-----------------------------~~~l~~P~giavdp~~g  214 (386)
T 3v65_B          164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-----------------------------WQSLEKPRAIALHPMEG  214 (386)
T ss_dssp             EEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE-----------------------------CSSCSCEEEEEEETTTT
T ss_pred             EEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee-----------------------------cCCCCCCcEEEEEcCCC
Confidence            78887444 4445455677888776543221111                             01223567899998766


Q ss_pred             EEEEee-CC-CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecCCCceeeeeeccCCCC
Q 036585          187 LMLLTT-ME-GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVRSGKEVASWMSFDTEP  263 (304)
Q Consensus       187 ~l~~~~-~d-g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~i  263 (304)
                      .|+.+. .. +.|..+++.... ...+..  ..-.....++|+|++..|+.+ ...+.|..+|+........+.......
T Consensus       215 ~ly~td~~~~~~I~r~~~dG~~-~~~~~~--~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P  291 (386)
T 3v65_B          215 TIYWTDWGNTPRIEASSMDGSG-RRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHP  291 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTSCS-CEEEEC--SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSE
T ss_pred             eEEEeccCCCCEEEEEeCCCCC-cEEEEE--CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCc
Confidence            665554 33 689999875433 333321  233456789999877666655 456789999986433322232233456


Q ss_pred             ceEEeC
Q 036585          264 PVIKWA  269 (304)
Q Consensus       264 ~~~~~~  269 (304)
                      ..|++.
T Consensus       292 ~giav~  297 (386)
T 3v65_B          292 FAITVF  297 (386)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            777873

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.00  E-value=2e-07  Score=79.36  Aligned_cols=244  Identities=9%  Similarity=0.053  Sum_probs=137.0

Q ss_pred             cEEEEee------CCCeEEEEecCCcceeeeecccccc-------------------------------------e-eEE
Q 036585           28 IYLVTAS------DDESIRLYDVTAATCLKTINSKKYG-------------------------------------V-DLV   63 (304)
Q Consensus        28 ~~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~~~-------------------------------------v-~~~   63 (304)
                      ..+++++      .++.|+.+|.++++++-++......                                     + ..+
T Consensus       167 g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~  246 (599)
T 1w6s_A          167 DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWY  246 (599)
T ss_dssp             TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccce
Confidence            3455554      3789999999999987665432110                                     0 134


Q ss_pred             EEccCCCeEEEEecCC-------------CCCceEEEEccCceeeeeccccc----------ccEEEEEEc-CCC---CE
Q 036585           64 CFTSHPTTVIYSSKNG-------------WDESLRLLSLHDNKYSRYFKGHH----------DRVVLLSLC-SSK---DC  116 (304)
Q Consensus        64 ~~~~~~~~l~~~~~~~-------------~d~~i~vwd~~~~~~~~~~~~~~----------~~v~~~~~~-~~~---~~  116 (304)
                      ++.+....++.+..+.             +.+.|.-+|..+++.+..++...          .++. +... .+|   ..
T Consensus       247 a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~  325 (599)
T 1w6s_A          247 AYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKL  325 (599)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEE
T ss_pred             eEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEE
Confidence            5666777777776521             12479999999998876655321          2222 2332 466   46


Q ss_pred             EEEcccCCeEEEEeCCcceeeceEEEeccce--eEec-CCCeEEEec------CCCeEEEEecCC--CCCceEEEEecCC
Q 036585          117 FISGSLDRTVLLWDQRAEKCQGLLRVQGRPA--AAYD-DQGLVFGYE------KGPLDIFSVGGD--ISDANVVKFSNDG  185 (304)
Q Consensus       117 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~------~~~~~~~~~~~~--~~~v~~~~~~~~~  185 (304)
                      ++.++.+|.++++|.++++.+..........  ...+ +.+..+...      .... .....+.  ...-..++++|+.
T Consensus       326 v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~-~~~~P~~~Gg~~w~~~a~dp~~  404 (599)
T 1w6s_A          326 LTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLA-KDICPSAMGYHNQGHDSYDPKR  404 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCE-EEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCc-cEeccCcccccCCCCccCCCCC
Confidence            7778999999999999998877655322100  0000 000000000      0000 0000000  0001123333333


Q ss_pred             cEEEEe---------------------------------e------CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEE
Q 036585          186 RLMLLT---------------------------------T------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASF  226 (304)
Q Consensus       186 ~~l~~~---------------------------------~------~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~  226 (304)
                      .++++.                                 +      ..|.|.-||+.+++.+.+....    .+...-.+
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~  480 (599)
T 1w6s_A          405 ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----FAVWGGTM  480 (599)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----SCCCSBCE
T ss_pred             CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----CCccCcce
Confidence            322221                                 1      3578999999999998887632    11111112


Q ss_pred             cCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCC-ceEEeCCCCc-EEEE
Q 036585          227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP-PVIKWAPGSL-MFVT  277 (304)
Q Consensus       227 s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i-~~~~~~~~~~-~l~s  277 (304)
                      ...+..++.++.|+.++.||.++++.+.+++...+.+ .-+.+..+|+ ++++
T Consensus       481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~  533 (599)
T 1w6s_A          481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI  533 (599)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEE
Confidence            2356678889999999999999999988875443222 2355666776 4443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.97  E-value=3.8e-06  Score=66.93  Aligned_cols=206  Identities=10%  Similarity=-0.049  Sum_probs=122.8

Q ss_pred             cEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEE
Q 036585           28 IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVL  107 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  107 (304)
                      .+|+.+.. ..|+..++........+.. ...+..++|.+....|+.+...  .+.|..+++........+.........
T Consensus        45 ~~ll~~~~-~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~--~~~I~r~~~~g~~~~~~~~~~~~~p~g  120 (349)
T 3v64_C           45 PVLLFANR-IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVT--LDRILRANLNGSNVEEVVSTGLESPGG  120 (349)
T ss_dssp             CEEEEECB-SCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred             ceeEeecc-cceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEecc--CCceEEEecCCCCceEEEeCCCCCccE
Confidence            34444433 4588888775544433333 3357899999877777776543  788999998766533333322234567


Q ss_pred             EEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCc
Q 036585          108 LSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGR  186 (304)
Q Consensus       108 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (304)
                      +++.+.+. ++++-...+.|.+.++.........                             .........++++|.+.
T Consensus       121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-----------------------------~~~l~~P~~iavdp~~g  171 (349)
T 3v64_C          121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-----------------------------WQSLEKPRAIALHPMEG  171 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----------------------------CTTCSCEEEEEEETTTT
T ss_pred             EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE-----------------------------eCCCCCcceEEEecCcC
Confidence            88887444 4455555678888887643221111                             01223457899998665


Q ss_pred             EEEEee-CC-CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecCCCceeeeeeccCCCC
Q 036585          187 LMLLTT-ME-GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVRSGKEVASWMSFDTEP  263 (304)
Q Consensus       187 ~l~~~~-~d-g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~i  263 (304)
                      .|+.+. .. +.|..+++.... ...+..  ..-.....++++|++..|+.+. ..+.|..+|+........+.......
T Consensus       172 ~ly~td~~~~~~I~r~~~dG~~-~~~~~~--~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P  248 (349)
T 3v64_C          172 TIYWTDWGNTPRIEASSMDGSG-RRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHP  248 (349)
T ss_dssp             EEEEEECSSSCEEEEEETTSCS-CEESCC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSE
T ss_pred             eEEEeccCCCCEEEEEeCCCCC-cEEEEE--CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCc
Confidence            555543 34 789999876433 222211  2334567899998777666654 56789999986433222222233455


Q ss_pred             ceEEeC
Q 036585          264 PVIKWA  269 (304)
Q Consensus       264 ~~~~~~  269 (304)
                      ..+++.
T Consensus       249 ~giav~  254 (349)
T 3v64_C          249 FAITVF  254 (349)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            777773

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.97  E-value=3.5e-06  Score=67.14  Aligned_cols=215  Identities=7%  Similarity=-0.040  Sum_probs=125.1

Q ss_pred             eeEeecccC-cEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           19 EILQSMEVG-IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        19 ~~i~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ..+.+.+.+ .++.+-...+.|..+++........+.........+++.+.+..|+.+...  .+.|.+.++........
T Consensus        76 ~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~~~~l  153 (349)
T 3v64_C           76 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAHRKVL  153 (349)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEE
T ss_pred             EEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCC--CCeEEEEcCCCCceEEE
Confidence            345555444 444444456778888877654333333333456788998877666666542  77899999875443333


Q ss_pred             cccccccEEEEEEcCCCCEEEEcc-cC-CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGS-LD-RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD  175 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (304)
                      +.........+++.|.+..|+... .. +.|...++..........                             .....
T Consensus       154 ~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-----------------------------~~~~~  204 (349)
T 3v64_C          154 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-----------------------------THLFW  204 (349)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC-----------------------------SSCSC
T ss_pred             EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE-----------------------------CCCCC
Confidence            333334568899998665555443 33 677777765432211110                             11234


Q ss_pred             ceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585          176 ANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA  254 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~  254 (304)
                      .+.++++|++..|+.+ ...+.|..+|+.... ...+..  ........+++. ++..+++-...+.|..++..+++...
T Consensus       205 PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~~~~--~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~  280 (349)
T 3v64_C          205 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVIS--QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQE  280 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC--SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             cceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEEEEe--CCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccE
Confidence            5789999876666655 456789999976433 333321  123455677773 44555555567788888866776655


Q ss_pred             eeeccCCCCceEEe
Q 036585          255 SWMSFDTEPPVIKW  268 (304)
Q Consensus       255 ~~~~~~~~i~~~~~  268 (304)
                      .+.........+++
T Consensus       281 ~i~~~~~~p~gi~v  294 (349)
T 3v64_C          281 IIRNKLHFPMDIHT  294 (349)
T ss_dssp             EEECSCSCCCCEEE
T ss_pred             EeccCCCCCceEEE
Confidence            55433333444443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.95  E-value=2.5e-06  Score=68.97  Aligned_cols=215  Identities=7%  Similarity=-0.041  Sum_probs=127.3

Q ss_pred             eeEeeccc-CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           19 EILQSMEV-GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        19 ~~i~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ..+.+.+. +.++++-...+.|..+++........+.........+++.+.+..|+.+...  .+.|.+.++........
T Consensus       119 ~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~--~~~I~~~~~dg~~~~~l  196 (386)
T 3v65_B          119 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAHRKVL  196 (386)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETT--TTEEEECBTTSCSCEEE
T ss_pred             EEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCC--CCeEEEEeCCCCceEEe
Confidence            34556654 4444455566788888887654433333333356678998877766666542  67888888765443333


Q ss_pred             cccccccEEEEEEcCCCCEEEEcc-cC-CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGS-LD-RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD  175 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (304)
                      +.........+++.|.+..|+.+. .. +.|..+++..........                             .....
T Consensus       197 ~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-----------------------------~~~~~  247 (386)
T 3v65_B          197 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-----------------------------THLFW  247 (386)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-----------------------------SSCSC
T ss_pred             ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-----------------------------CCCCC
Confidence            333335678899998666555543 33 567777765432211110                             11234


Q ss_pred             ceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585          176 ANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA  254 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~  254 (304)
                      .+.|+++|++..|+.+ ...+.|..+|+.... ...+..  ........+++ ..+..+++-...+.|..+|..+++.+.
T Consensus       248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~  323 (386)
T 3v65_B          248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQE  323 (386)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEECTTSCS-CEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             eeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe-eEEEEE--CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceE
Confidence            5789999876666555 456789999976433 333321  22345567777 344555555667889999877777666


Q ss_pred             eeeccCCCCceEEe
Q 036585          255 SWMSFDTEPPVIKW  268 (304)
Q Consensus       255 ~~~~~~~~i~~~~~  268 (304)
                      .+.........|++
T Consensus       324 ~i~~~~~~p~gi~v  337 (386)
T 3v65_B          324 IIRNKLHFPMDIHT  337 (386)
T ss_dssp             EEECSCSCCCCEEE
T ss_pred             EEccCCCCCceEEE
Confidence            66544344455554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.93  E-value=2.6e-07  Score=81.33  Aligned_cols=197  Identities=10%  Similarity=0.046  Sum_probs=111.1

Q ss_pred             ceeEEEEc-cCCCeEEEEecCCC--CCceEEEEccCc-eeeeecccccccEEEEEEcCCCCEEEEcccC-----CeEEEE
Q 036585           59 GVDLVCFT-SHPTTVIYSSKNGW--DESLRLLSLHDN-KYSRYFKGHHDRVVLLSLCSSKDCFISGSLD-----RTVLLW  129 (304)
Q Consensus        59 ~v~~~~~~-~~~~~l~~~~~~~~--d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw  129 (304)
                      .+...+|| |||++|+.+...+.  ...|+++|+.++ +.+...  -......+.|+||++.|+....+     ..|+.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            57789999 99999988765210  135999999998 632210  11123468899999888777654     257777


Q ss_pred             eCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC---CCeEEEEEcCCCc
Q 036585          130 DQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGT  206 (304)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~  206 (304)
                      ++.++.....+.                         +.- ........+.|+|||++|+..+.   ...|+++|+.++.
T Consensus       253 ~lgt~~~~~~lv-------------------------~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~  306 (751)
T 2xe4_A          253 VMGKLQSEDVCL-------------------------YEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN  306 (751)
T ss_dssp             ETTSCGGGCEEE-------------------------EEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred             ECCCCchhcEEE-------------------------Eec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence            776654221111                         100 11123456889999998887653   3468899988752


Q ss_pred             -ee--EEEEeCCCCCCcceEEEEcCCCcEEEEecCC----CcEEEEecCCCceeee-eeccCC--CCceEEeCCCCcEEE
Q 036585          207 -LL--STYNVKPVSRNSTLEASFSPEGMFVISGSGD----GSVHAWSVRSGKEVAS-WMSFDT--EPPVIKWAPGSLMFV  276 (304)
Q Consensus       207 -~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~v~d~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~l~  276 (304)
                       ..  ..+.  .........+.|+.++.+++....+    ..|..+|+.++..... +..+..  .+..+.+. .+.+++
T Consensus       307 ~~~~~~~l~--~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~  383 (751)
T 2xe4_A          307 AHNTLEIVR--PREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVV  383 (751)
T ss_dssp             TCCCEEESS--CCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEE
T ss_pred             CCceeEEee--cCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEE
Confidence             11  2221  1233445555555444455555443    3577777764322233 333433  34455554 234445


Q ss_pred             EecCc--eEEec
Q 036585          277 TGSSE--LSFWI  286 (304)
Q Consensus       277 s~~~d--~~iw~  286 (304)
                      +...+  .+||.
T Consensus       384 ~~~~~g~~~l~~  395 (751)
T 2xe4_A          384 AGRRAGLTRIWT  395 (751)
T ss_dssp             EEEETTEEEEEE
T ss_pred             EEEeCCEEEEEE
Confidence            55544  34443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=2.9e-06  Score=69.60  Aligned_cols=231  Identities=12%  Similarity=0.093  Sum_probs=129.0

Q ss_pred             ceeeEeecc-cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCC--CCceEEEEccCce
Q 036585           17 SEEILQSME-VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--DESLRLLSLHDNK   93 (304)
Q Consensus        17 ~~~~i~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--d~~i~vwd~~~~~   93 (304)
                      .+..+.+.| ++..|+.+...+.|+.+|++++...... ........++|+++++.|+++...+.  ...+..++. .+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            345577776 4455555555478999998866544333 34456889999999997777654210  112333443 332


Q ss_pred             ee--eecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           94 YS--RYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        94 ~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      ..  ..+. .......++++| ++.++++-..++.|..++...+........                            
T Consensus       216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~----------------------------  266 (430)
T 3tc9_A          216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI----------------------------  266 (430)
T ss_dssp             SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC----------------------------
T ss_pred             eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc----------------------------
Confidence            21  2222 123346788999 677666666778999999876543221111                            


Q ss_pred             CCCCCceEEEEecCCcEEEEe-eCCCeEEEEEcCC--Cce--eEEEEeCCCC------------CCcce-EEEEc-----
Q 036585          171 GDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFR--GTL--LSTYNVKPVS------------RNSTL-EASFS-----  227 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~--~~~--~~~~~~~~~~------------~~~i~-~~~~s-----  227 (304)
                      ........++|+|+|++|+++ ...+.|..++...  ++.  ...+......            -.... .++..     
T Consensus       267 ~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~  346 (430)
T 3tc9_A          267 QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYK  346 (430)
T ss_dssp             SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGT
T ss_pred             CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccc
Confidence            111345679999999955554 5677899987653  222  2222211000            01122 34443     


Q ss_pred             ---CCCcEEEEecCCCcEEEEecCCCceeeeeecc------------------CCCCceEEeCCCCcEEEEecC
Q 036585          228 ---PEGMFVISGSGDGSVHAWSVRSGKEVASWMSF------------------DTEPPVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       228 ---~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~l~s~~~  280 (304)
                         +++.+.++=..++.|+.++ .+++.. .+.+.                  -.....|+++|++..|+.+..
T Consensus       347 ~~D~~g~lyvaD~~n~~I~~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~  418 (430)
T 3tc9_A          347 GSSDEYDFYFCDRENHCIRILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDR  418 (430)
T ss_dssp             TSSCCEEEEEEEGGGTEEEEEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred             ccCCCCeEEEEECCCcEEEEEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEEC
Confidence               3455555555667888888 455432 22211                  114678999995444444443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.91  E-value=5.6e-06  Score=73.60  Aligned_cols=258  Identities=10%  Similarity=0.065  Sum_probs=157.2

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeec------ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTIN------SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      +|. |-.|+.++-|..|+..+........      .....|.++...+++. |..|+.   ++-|..|+..+++......
T Consensus       320 ~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~---~~Gl~~~~~~~~~~~~~~~  394 (795)
T 4a2l_A          320 QGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTN---DGGLNLYNPITQRFTSYTL  394 (795)
T ss_dssp             TSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEES---SSCEEEECTTTCCEEEECC
T ss_pred             CcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEEC---CCCeEEEcCCCCcEEEEec
Confidence            344 4456666668888876544221111      1234688898887775 555665   7789999988765433221


Q ss_pred             c--------ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEE------EeccceeEecCCCeEEEecCCCeE
Q 036585          100 G--------HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR------VQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus       100 ~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                      .        ....|.++...++++.|..|+.++-+..||.++++......      ......+..++++.+.....+.+.
T Consensus       395 ~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~  474 (795)
T 4a2l_A          395 QEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALV  474 (795)
T ss_dssp             C------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEE
T ss_pred             CCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCcee
Confidence            1        23578999988888756667776779999987765332211      011123344555544433334555


Q ss_pred             EEEecC---------------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEe----CCCCCCcceEEEE
Q 036585          166 IFSVGG---------------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV----KPVSRNSTLEASF  226 (304)
Q Consensus       166 ~~~~~~---------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~~  226 (304)
                      .++...               ....|.++...++|.+.+ |+. +-+..||..+++.  .+..    .......|.++..
T Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~  550 (795)
T 4a2l_A          475 RFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYE  550 (795)
T ss_dssp             EEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEE
T ss_pred             EEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEE
Confidence            554321               124578888888887544 444 5588899877665  3321    0113456888999


Q ss_pred             cCCCcEEEEecCCCcEEEEecCCCceeeeeec----cCCCCceEEeCCCCcEEEEecCceEEeccCCcccccc
Q 036585          227 SPEGMFVISGSGDGSVHAWSVRSGKEVASWMS----FDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAY  295 (304)
Q Consensus       227 s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~~~~~  295 (304)
                      +++|++.++.. . -|..||..+.+. ..+..    ....|.++...++|.+.+++...+..|+.+..++..+
T Consensus       551 d~~g~lWigT~-~-Gl~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~~Gl~~~~~~~~~~~~~  620 (795)
T 4a2l_A          551 ASNGIIWVGTR-E-GFYCFNEKDKQI-KRYNTTNGLPNNVVYGILEDSFGRLWLSTNRGISCFNPETEKFRNF  620 (795)
T ss_dssp             CTTSCEEEEES-S-CEEEEETTTTEE-EEECGGGTCSCSCEEEEEECTTSCEEEEETTEEEEEETTTTEEEEE
T ss_pred             CCCCCEEEEeC-C-CceeECCCCCcE-EEeCCCCCCchhheEEEEECCCCCEEEEcCCceEEEcCCCCcEEEc
Confidence            99988665544 3 488899876543 23321    1345788889999988877765588888876665544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.90  E-value=1.3e-05  Score=65.08  Aligned_cols=205  Identities=12%  Similarity=0.024  Sum_probs=124.4

Q ss_pred             cEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc----eeeeecccccc
Q 036585           28 IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN----KYSRYFKGHHD  103 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~----~~~~~~~~~~~  103 (304)
                      .+|+.+. ...|+..++........+. ....+..++|.+....|+.+...  .+.|+.+++...    .....+.....
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~  159 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQ  159 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETT--TTEEEEEEC------CCCEEEECSSCS
T ss_pred             ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecC--CCeEEEEEcccCCCCCcceEEEeCCCC
Confidence            3555554 3679999988665444333 34468899999987777777543  788988888652    22222332334


Q ss_pred             cEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEe
Q 036585          104 RVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS  182 (304)
Q Consensus       104 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  182 (304)
                      ....+++.+ .++++++-...+.|.+.+++.......+.                             ........++++
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-----------------------------~~~~~P~~iavd  210 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-----------------------------ENGSKPRAIVVD  210 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-----------------------------CSSCCEEEEEEE
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-----------------------------CCCCCcceEEEe
Confidence            567888887 44455555567788888876543322221                             122346789999


Q ss_pred             cCCcEEEEeeC--CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecCCCceeeeeec-
Q 036585          183 NDGRLMLLTTM--EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVRSGKEVASWMS-  258 (304)
Q Consensus       183 ~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~-  258 (304)
                      |.+..|+.+..  .+.|...++.... ...+..  ..-.....++++|++..|+.+. ..+.|..+|+........... 
T Consensus       211 p~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~  287 (400)
T 3p5b_L          211 PVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE  287 (400)
T ss_dssp             TTTTEEEEEECSSSCCEEEEETTSCS-CEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS
T ss_pred             cccCeEEEEeCCCCCEEEEEeCCCCc-cEEEEE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC
Confidence            97666665542  4789999976433 333321  2335678899999877777664 567899999864333222221 


Q ss_pred             -cCCCCceEEe
Q 036585          259 -FDTEPPVIKW  268 (304)
Q Consensus       259 -~~~~i~~~~~  268 (304)
                       .......+++
T Consensus       288 ~~l~~P~gl~v  298 (400)
T 3p5b_L          288 KRLAHPFSLAV  298 (400)
T ss_dssp             STTSSEEEEEE
T ss_pred             CCCCCCEEEEE
Confidence             1233456666

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.90  E-value=1.1e-06  Score=77.46  Aligned_cols=113  Identities=10%  Similarity=0.111  Sum_probs=74.7

Q ss_pred             eeEeec-ccCcEEEEeeC-CC----eEEEEecCCc-ceeee-ecccccceeEEEEccCCCeEEEEecCC--CCCceEEEE
Q 036585           19 EILQSM-EVGIYLVTASD-DE----SIRLYDVTAA-TCLKT-INSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLS   88 (304)
Q Consensus        19 ~~i~~~-~~~~~l~~~~~-d~----~i~vw~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd   88 (304)
                      ....++ |||++||.+.. +|    .|+++|+.++ +.+.. +.   .....++|+||++.|+......  ....|++++
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            457899 99998885543 22    5999999988 63321 21   1245789999999988887510  013688888


Q ss_pred             ccCcee--eeecc-cccccEEEEEEcCCCCEEEEccc---CCeEEEEeCCcc
Q 036585           89 LHDNKY--SRYFK-GHHDRVVLLSLCSSKDCFISGSL---DRTVLLWDQRAE  134 (304)
Q Consensus        89 ~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~  134 (304)
                      +.+++.  ...+. ........+.|+||+++|+..+.   ...|+++|+.++
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            877642  22222 22334678899999998876553   346788888764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.88  E-value=1.1e-06  Score=74.97  Aligned_cols=244  Identities=13%  Similarity=0.064  Sum_probs=137.0

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeeccccc----cee-EEEEcc---CCC-eEEEEecC---CCCCceEEEEccCce
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKY----GVD-LVCFTS---HPT-TVIYSSKN---GWDESLRLLSLHDNK   93 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~----~v~-~~~~~~---~~~-~l~~~~~~---~~d~~i~vwd~~~~~   93 (304)
                      .+..++.++.|+.|..+|.++++.+-.......    .+. ......   +++ .+++++..   +.++.|+-+|..+++
T Consensus       116 ~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~  195 (582)
T 1flg_A          116 YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE  195 (582)
T ss_dssp             ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence            356788888999999999999998866543220    111 111111   233 55555421   127899999999998


Q ss_pred             eeeecccccccE-----------------------------------------EEEEEcCCCCEEEEccc----------
Q 036585           94 YSRYFKGHHDRV-----------------------------------------VLLSLCSSKDCFISGSL----------  122 (304)
Q Consensus        94 ~~~~~~~~~~~v-----------------------------------------~~~~~~~~~~~l~~~~~----------  122 (304)
                      .+.........+                                         ..+++.|+..+++.+..          
T Consensus       196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            765443210000                                         12345555556665442          


Q ss_pred             ----------C----CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEe-cCC--
Q 036585          123 ----------D----RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS-NDG--  185 (304)
Q Consensus       123 ----------d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~--  185 (304)
                                |    +.|..+|.++++....+.......                   |+......++ -+... .+|  
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~-------------------wd~~~~~~p~-l~~~~~~~G~~  335 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDA-------------------WDFSGNNELV-LFDYKAKDGKI  335 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCC-------------------SCCCCCCCCE-EEEEECSSSCE
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCc-------------------ccccCCCCcE-EEeeecCCCCE
Confidence                      2    467777777777766554321100                   0000001111 12222 466  


Q ss_pred             -cEEEEeeCCCeEEEEEcCCCceeEEEEeCCCC----------CCc--------------------------------ce
Q 036585          186 -RLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS----------RNS--------------------------------TL  222 (304)
Q Consensus       186 -~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~----------~~~--------------------------------i~  222 (304)
                       ..++.++.+|.++++|.++|+.+..+......          ..+                                -.
T Consensus       336 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~  415 (582)
T 1flg_A          336 VKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWN  415 (582)
T ss_dssp             EEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSS
T ss_pred             EEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCC
Confidence             37888999999999999999998877642100          000                                01


Q ss_pred             EEEEcCCCcEEEEec---------------------------------CCCcEEEEecCCCceeeeeeccCCCCceEEeC
Q 036585          223 EASFSPEGMFVISGS---------------------------------GDGSVHAWSVRSGKEVASWMSFDTEPPVIKWA  269 (304)
Q Consensus       223 ~~~~s~~~~~l~~~~---------------------------------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  269 (304)
                      .++++|+...+++..                                 .+|.|.-||+.+++.+-+..... ++..-...
T Consensus       416 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~  494 (582)
T 1flg_A          416 PMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLA  494 (582)
T ss_dssp             CCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEE
T ss_pred             CceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceE
Confidence            356777655555432                                 35789999999999877765332 22221122


Q ss_pred             CCCcEEEEecCc--eEEeccCCc
Q 036585          270 PGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       270 ~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      ..+.+++.++.|  ++.|+.+..
T Consensus       495 tagglvf~g~~dg~l~A~D~~tG  517 (582)
T 1flg_A          495 TAGNLVFTGTGDGYFKAFDAKSG  517 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTC
T ss_pred             eCCCEEEEECCCCcEEEEECCCC
Confidence            235566667777  666666443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.88  E-value=4.3e-06  Score=68.58  Aligned_cols=236  Identities=8%  Similarity=-0.001  Sum_probs=131.1

Q ss_pred             eeeEeeccc--CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCC-CCC-ceEEEEccCce
Q 036585           18 EEILQSMEV--GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG-WDE-SLRLLSLHDNK   93 (304)
Q Consensus        18 ~~~i~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~d~-~i~vwd~~~~~   93 (304)
                      +..+.+.++  +..|+.+...+.|+.++..+++..... ........++++++++ |+++...+ .+. .+...+...+.
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence            445677774  334444443378999998777655443 3444688999999999 55554310 011 13333332211


Q ss_pred             e-eeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585           94 Y-SRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG  171 (304)
Q Consensus        94 ~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (304)
                      . ...+. .-.....++++| ++.++++-..++.|+.+|..++.....+...                           +
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~---------------------------~  270 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM---------------------------D  270 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC---------------------------S
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc---------------------------C
Confidence            1 01111 123345688888 6766666667788999998766542222111                           0


Q ss_pred             CCCCceEEEEecCCcEEEEe-eCCCeEEEEEcC--CCcee--EEEEeCCC------------CCCcceEEEE--------
Q 036585          172 DISDANVVKFSNDGRLMLLT-TMEGHIHVLDSF--RGTLL--STYNVKPV------------SRNSTLEASF--------  226 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~--~~~~~--~~~~~~~~------------~~~~i~~~~~--------  226 (304)
                      ....-..++|+|+++.|+++ ...+.|+.++..  ++...  ..+.....            .-.....+++        
T Consensus       271 ~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~  350 (433)
T 4hw6_A          271 TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG  350 (433)
T ss_dssp             CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred             CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence            11122469999999855555 456789998865  33221  22221100            1123556899        


Q ss_pred             -cCCCcEEEEecCCCcEEEEecCCCceeeeeecc------------------CCCCceEEeC-CCCcEEEEecCceEEe
Q 036585          227 -SPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF------------------DTEPPVIKWA-PGSLMFVTGSSELSFW  285 (304)
Q Consensus       227 -s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------------~~~i~~~~~~-~~~~~l~s~~~d~~iw  285 (304)
                       .++++++++-..++.|+.++. ++.. ..+.+.                  -.....|+++ +++.++++=..+-+|.
T Consensus       351 dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr  427 (433)
T 4hw6_A          351 EEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVR  427 (433)
T ss_dssp             SSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred             cCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence             777777777677788999985 5533 232211                  1235689999 5555554433333333

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.88  E-value=1.2e-05  Score=63.10  Aligned_cols=207  Identities=7%  Similarity=-0.042  Sum_probs=121.9

Q ss_pred             eeeEeecccC-cEEEEeeCCCeEEEEecCC----cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc
Q 036585           18 EEILQSMEVG-IYLVTASDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   92 (304)
Q Consensus        18 ~~~i~~~~~~-~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~   92 (304)
                      ...+.+.+.+ .++++-..++.|..+++.+    ......+.........+++.+.+..|+.+...  .+.|.+.++...
T Consensus        32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~--~~~I~~~~~~g~  109 (316)
T 1ijq_A           32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGV  109 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSS
T ss_pred             eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECC--CCEEEEEeCCCC
Confidence            4456676654 4455555668899999875    22222232222356789998766666665432  789999998754


Q ss_pred             eeeeecccccccEEEEEEcCCCCEEEEcccC--CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           93 KYSRYFKGHHDRVVLLSLCSSKDCFISGSLD--RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      .....+.........+++.|.+..++.+...  +.|...++..... ..+.                            .
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~----------------------------~  160 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLV----------------------------T  160 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEE----------------------------C
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEE----------------------------E
Confidence            3332233233467889999866655554432  5777777653221 1111                            0


Q ss_pred             CCCCCceEEEEecCCcEEEEee-CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585          171 GDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~  249 (304)
                      ......+.++++|++..|+.+. ..+.|..+|+.. .....+............+++. .+..+++-...+.|..++..+
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~  238 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT  238 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCC
Confidence            1123457899998776666554 567999999864 3333333211122345677775 355555556678899999877


Q ss_pred             Cceeeeee
Q 036585          250 GKEVASWM  257 (304)
Q Consensus       250 ~~~~~~~~  257 (304)
                      ++.+..+.
T Consensus       239 g~~~~~i~  246 (316)
T 1ijq_A          239 GSDVNLLA  246 (316)
T ss_dssp             CCCCEEEE
T ss_pred             CcceEEEe
Confidence            77655553

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.86  E-value=1.4e-05  Score=62.78  Aligned_cols=205  Identities=12%  Similarity=0.026  Sum_probs=122.9

Q ss_pred             EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC----ceeeeeccccccc
Q 036585           29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----NKYSRYFKGHHDR  104 (304)
Q Consensus        29 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~----~~~~~~~~~~~~~  104 (304)
                      +|+.+.. ..|+..|+.+.+....+.. ...+..++|.+.+..|+.+...  .+.|..+++..    ......+...-..
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~~   78 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQA   78 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSC
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECC--CCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence            4444444 4699999987765554443 3467899999987777776653  78999999876    2222222222234


Q ss_pred             EEEEEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec
Q 036585          105 VVLLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN  183 (304)
Q Consensus       105 v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (304)
                      ...+++.+.+. ++++-...+.|.+.++..........                             ........++++|
T Consensus        79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-----------------------------~~~~~P~~iavdp  129 (316)
T 1ijq_A           79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-----------------------------ENGSKPRAIVVDP  129 (316)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-----------------------------CTTCCEEEEEEET
T ss_pred             cCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-----------------------------CCCCCcceEEeCC
Confidence            57788886444 44454567889888876433221111                             1123557899998


Q ss_pred             CCcEEEEeeC-C-CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecCCCceeeeeec--
Q 036585          184 DGRLMLLTTM-E-GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVRSGKEVASWMS--  258 (304)
Q Consensus       184 ~~~~l~~~~~-d-g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~--  258 (304)
                      .+..|+.+.. . +.|..+++. ++....+..  ..-.....++++|++..|+.+. ..+.|..+|+.. .....+..  
T Consensus       130 ~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~--~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~  205 (316)
T 1ijq_A          130 VHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDE  205 (316)
T ss_dssp             TTTEEEEEECSSSCEEEEEETT-SCCEEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECT
T ss_pred             CCCEEEEEccCCCCeEEEEcCC-CCCeEEEEE--CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecC
Confidence            6665655544 2 789888875 443333331  1335677899999877766654 567899999864 33333321  


Q ss_pred             -cCCCCceEEeCC
Q 036585          259 -FDTEPPVIKWAP  270 (304)
Q Consensus       259 -~~~~i~~~~~~~  270 (304)
                       .......+++..
T Consensus       206 ~~~~~P~giav~~  218 (316)
T 1ijq_A          206 KRLAHPFSLAVFE  218 (316)
T ss_dssp             TTTSSEEEEEEET
T ss_pred             CccCCcEEEEEEC
Confidence             123456777753

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.84  E-value=1.6e-05  Score=70.59  Aligned_cols=260  Identities=11%  Similarity=0.066  Sum_probs=154.8

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeec---------ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTIN---------SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      +|. |-.|+.++-|..++..+........         .....|.++...+++. |..|+.   ++-|..|+..+++...
T Consensus       323 ~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~---~~Gl~~~~~~~~~~~~  397 (781)
T 3v9f_A          323 FNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTD---GGGINVFENGKRVAIY  397 (781)
T ss_dssp             SCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEB---SSCEEEEETTEEEEEC
T ss_pred             CCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeC---CCcEEEEECCCCeEEE
Confidence            344 4556656668888876544322110         1234688888877765 556665   6678889987654322


Q ss_pred             ec---ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEE----EeccceeEecCCCeEEEecCCCeEEEEe
Q 036585           97 YF---KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR----VQGRPAAAYDDQGLVFGYEKGPLDIFSV  169 (304)
Q Consensus        97 ~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (304)
                      ..   ......|.++...+++.+.+ |+.++-+..+|.++++......    ......+..++++.+.....+.+..++.
T Consensus       398 ~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~  476 (781)
T 3v9f_A          398 NKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDL  476 (781)
T ss_dssp             C-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEES
T ss_pred             ccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeC
Confidence            11   12345789998887776544 6666678889887665432211    0111234445555554433344555543


Q ss_pred             cC---------C-----CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC-CCCCCcceEEEEcCCCcEEE
Q 036585          170 GG---------D-----ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-PVSRNSTLEASFSPEGMFVI  234 (304)
Q Consensus       170 ~~---------~-----~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~  234 (304)
                      ..         .     ...|.++...++|. |.+|+..+-+..||..+++. ..+... ......|.++..+++|.+.+
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi  554 (781)
T 3v9f_A          477 ASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWL  554 (781)
T ss_dssp             SSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEE
T ss_pred             CCCeEEecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEE
Confidence            22         1     24577888888887 45556544577898766543 333211 11345788999988888666


Q ss_pred             EecCCCcEEEEecCCCceeeeeec----cCCCCceEEeCCCCcEEEEecCceEEeccCCcccccc
Q 036585          235 SGSGDGSVHAWSVRSGKEVASWMS----FDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAY  295 (304)
Q Consensus       235 ~~~~dg~i~v~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~~~~~  295 (304)
                      +.. +|.|..||.++++. ..+..    ....|.++...++|.+.+++...+..++.+..++..+
T Consensus       555 ~T~-~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~~~~~~~~~  617 (781)
T 3v9f_A          555 ATG-EGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYITSKKCFYTY  617 (781)
T ss_dssp             EET-TEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEETTTTEEEEE
T ss_pred             EEC-CCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEEcCCceEEEECCCCceEEe
Confidence            554 67558899876653 23321    1246788999999988877765577787776655443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.82  E-value=5.4e-06  Score=62.34  Aligned_cols=206  Identities=12%  Similarity=0.114  Sum_probs=125.1

Q ss_pred             ceeeEeecccCc-EEEEeeCCCeEEEEecCCcceeeeeccc-ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           17 SEEILQSMEVGI-YLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        17 ~~~~i~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      ...-+++.++++ ++++...++.|...|.. ++.++.+... ......+++.+++.++++.-.   ++.+.++++.....
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~---~~~l~~~~v~~~~~  103 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDER---DYAIYVISLTPNSE  103 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETT---TTEEEEEEECTTCC
T ss_pred             CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECC---CCcEEEEEcCCCCe
Confidence            344577888755 55557778889999987 8877776422 246778888888865554333   77888888765432


Q ss_pred             e---eec------ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           95 S---RYF------KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        95 ~---~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                      +   ...      .........++|.|.++.|+++.......+|.+........+.......                  
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~------------------  165 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA------------------  165 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHH------------------
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchh------------------
Confidence            1   111      1123456899999998777777665555555543100000010000000                  


Q ss_pred             EEEecCCCCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCC------CCcceEEEEcCCCcEEEEecC
Q 036585          166 IFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS------RNSTLEASFSPEGMFVISGSG  238 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~  238 (304)
                       +.-......+..++++|. +.+++.+..+..+..+|. +++.+..+....+.      -...-.++|.++|+..++ ++
T Consensus       166 -~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE  242 (255)
T 3qqz_A          166 -LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SE  242 (255)
T ss_dssp             -HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ET
T ss_pred             -hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cC
Confidence             000012245788999995 556666777788999995 46677777754322      135678999999985544 66


Q ss_pred             CCcEEEEec
Q 036585          239 DGSVHAWSV  247 (304)
Q Consensus       239 dg~i~v~d~  247 (304)
                      -+.++++.-
T Consensus       243 ~n~~y~f~~  251 (255)
T 3qqz_A          243 PNRFYRFTP  251 (255)
T ss_dssp             TTEEEEEEC
T ss_pred             CceEEEEEe
Confidence            666776653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.82  E-value=1.6e-05  Score=62.16  Aligned_cols=206  Identities=13%  Similarity=0.048  Sum_probs=118.6

Q ss_pred             ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEccc-C-Ce
Q 036585           48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL-D-RT  125 (304)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~  125 (304)
                      +.+..+... .....++|+++++.+++-..   ++.|..||.... ....+. ....+..+++.++++++++... + ..
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~---~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~   96 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHE---VGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIP   96 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETT---TTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCC---CCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcce
Confidence            344444332 35678999999885555545   889999997754 222222 2356889999999986665433 2 24


Q ss_pred             EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC
Q 036585          126 VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG  205 (304)
Q Consensus       126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  205 (304)
                      |..+|..+++........                            .......++..+++..+++-..++.|+++|..++
T Consensus        97 v~~~d~~~g~~~~~~~~~----------------------------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           97 VVSLVKSDGTVETLLTLP----------------------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             EEEEECTTSCEEEEEECT----------------------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEcCCCCeEEEEEeCC----------------------------CccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence            666776666543222110                            0011233444455554554446889999997654


Q ss_pred             ceeEEEEe-------CCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecCC-Cce--eeeeeccCCCCceEEeCCCCcE
Q 036585          206 TLLSTYNV-------KPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVRS-GKE--VASWMSFDTEPPVIKWAPGSLM  274 (304)
Q Consensus       206 ~~~~~~~~-------~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~  274 (304)
                      +.......       ....-.....+  +|++++|+.+ ...+.|..|++.. ++.  ...+. .......++++++|++
T Consensus       149 ~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l  225 (306)
T 2p4o_A          149 SGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNL  225 (306)
T ss_dssp             EEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCE
T ss_pred             cEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCE
Confidence            32111110       00111233445  7888766655 4567899999864 332  12221 1245788999999987


Q ss_pred             EEEecCc--eEEeccCCc
Q 036585          275 FVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       275 l~s~~~d--~~iw~~~~~  290 (304)
                      +++....  +.+++.+.+
T Consensus       226 ~va~~~~~~V~~~~~~G~  243 (306)
T 2p4o_A          226 YGATHIYNSVVRIAPDRS  243 (306)
T ss_dssp             EEECBTTCCEEEECTTCC
T ss_pred             EEEeCCCCeEEEECCCCC
Confidence            6665433  777776643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.81  E-value=2.1e-05  Score=61.66  Aligned_cols=208  Identities=10%  Similarity=-0.010  Sum_probs=121.9

Q ss_pred             EEEEeeCCCeEEEEecCCcc-eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee-ecccccccEE
Q 036585           29 YLVTASDDESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR-YFKGHHDRVV  106 (304)
Q Consensus        29 ~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~  106 (304)
                      +|+.+. ...|+..++.... ....+......+..++|.+....|+.+...  .+.|..+++..+.... .+...-....
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~--~~~I~r~~~~g~~~~~~~~~~~l~~p~   82 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLLSPD   82 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETT--TTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECC--CCcEEEEEccCCCceEEEEcCCCCCcc
Confidence            344433 3579999988653 122222222356789999877777766543  7889999987653211 2222223456


Q ss_pred             EEEEcCC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC
Q 036585          107 LLSLCSS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG  185 (304)
Q Consensus       107 ~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  185 (304)
                      .+++.+. +.++++-...+.|.++++...... .+.                            .........+++.|.+
T Consensus        83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l~----------------------------~~~~~~P~giavdp~~  133 (318)
T 3sov_A           83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VLF----------------------------WQELDQPRAIALDPSS  133 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE----------------------------CSSCSSEEEEEEEGGG
T ss_pred             EEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-EEE----------------------------eCCCCCccEEEEeCCC
Confidence            7888864 444455556678888887643221 111                            0122345789999876


Q ss_pred             cEEEEee--CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecCCCceeeeeeccCCC
Q 036585          186 RLMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVRSGKEVASWMSFDTE  262 (304)
Q Consensus       186 ~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~  262 (304)
                      ..|+.+.  ..+.|..+++.. +....+..  ..-.....++++|++..|+.+ ...+.|..+|+..........+....
T Consensus       134 g~ly~td~~~~~~I~r~~~dG-~~~~~~~~--~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~  210 (318)
T 3sov_A          134 GFMYWTDWGEVPKIERAGMDG-SSRFIIIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPH  210 (318)
T ss_dssp             TEEEEEECSSSCEEEEEETTS-CSCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSC
T ss_pred             CEEEEEecCCCCEEEEEEcCC-CCeEEEEE--CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCC
Confidence            6666655  357899998753 33333321  123456789999977766666 45678999998643322222223344


Q ss_pred             CceEEeCCC
Q 036585          263 PPVIKWAPG  271 (304)
Q Consensus       263 i~~~~~~~~  271 (304)
                      ...+++..+
T Consensus       211 P~glav~~~  219 (318)
T 3sov_A          211 PFALTLFED  219 (318)
T ss_dssp             EEEEEEETT
T ss_pred             ceEEEEeCC
Confidence            567777543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.79  E-value=3.5e-05  Score=62.57  Aligned_cols=216  Identities=8%  Similarity=-0.012  Sum_probs=124.0

Q ss_pred             eeEeecccCcE-EEEeeCCCeEEEEecCCc----ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce
Q 036585           19 EILQSMEVGIY-LVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK   93 (304)
Q Consensus        19 ~~i~~~~~~~~-l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~   93 (304)
                      ..+.+.+.+.. +.+-...+.|+.+++...    .....+.........+++.+.+..|+.+...  .+.|.+.++....
T Consensus       115 ~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~--~~~I~~~~~~g~~  192 (400)
T 3p5b_L          115 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVK  192 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEECTTTCS
T ss_pred             eEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECC--CCeEEEEeCCCCc
Confidence            34556654444 444445677888887642    2222233233467789998866666666542  7889999987654


Q ss_pred             eeeecccccccEEEEEEcCCCCEEEEccc--CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585           94 YSRYFKGHHDRVVLLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG  171 (304)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (304)
                      ....+.........+++.|.+..|+....  .+.|...++..........                             .
T Consensus       193 ~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~-----------------------------~  243 (400)
T 3p5b_L          193 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-----------------------------E  243 (400)
T ss_dssp             EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC-----------------------------S
T ss_pred             eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE-----------------------------C
Confidence            43333333345788999986665555442  3567777765332211110                             1


Q ss_pred             CCCCceEEEEecCCcEEEEee-CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585          172 DISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG  250 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~  250 (304)
                      .....+.|++++++..|+.+. ..+.|..+|+.... ...+............+++. .+..+.+-...+.|..+|..++
T Consensus       244 ~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          244 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence            123567899998777676664 46789999986443 33333211122344567763 3344555556778999997777


Q ss_pred             ceeeeeeccCCCCceEE
Q 036585          251 KEVASWMSFDTEPPVIK  267 (304)
Q Consensus       251 ~~~~~~~~~~~~i~~~~  267 (304)
                      +.+..+.........+.
T Consensus       322 ~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          322 SDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             CCCEEEECSCSCEEEEE
T ss_pred             CceEEEecCCCCCceEE
Confidence            76666543333344443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.78  E-value=3.2e-05  Score=68.59  Aligned_cols=257  Identities=10%  Similarity=0.070  Sum_probs=147.2

Q ss_pred             EEEEeeCCCeEEEEecCCcceeeeec-------ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc-
Q 036585           29 YLVTASDDESIRLYDVTAATCLKTIN-------SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG-  100 (304)
Q Consensus        29 ~l~~~~~d~~i~vw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~-  100 (304)
                      .|..++.++-|..||..+++......       .....|.++...+++... .++.   + -+.+||..+++....... 
T Consensus       175 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lw-igt~---~-Gl~~~d~~~~~~~~~~~~~  249 (781)
T 3v9f_A          175 KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW-IGTS---K-GLALFNANTETFTNFHNNP  249 (781)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEE-EEET---T-EEEEEETTTTEEEC-----
T ss_pred             CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEE-EEeC---C-cHheECCCCCcEEEEEcCC
Confidence            34445555458888877665432111       112468888887777544 4553   5 688999877654322111 


Q ss_pred             ------ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEE-------E---------eccceeEecCCCeE-E
Q 036585          101 ------HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR-------V---------QGRPAAAYDDQGLV-F  157 (304)
Q Consensus       101 ------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~---------~~~~~~~~~~~~~~-~  157 (304)
                            ....|.++...+++. +..|+..+-|.++|..+........       .         .....+..+.++.+ +
T Consensus       250 ~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWi  328 (781)
T 3v9f_A          250 GNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWI  328 (781)
T ss_dssp             ------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEE
T ss_pred             CccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEE
Confidence                  235688988887775 4555554567888887654322211       0         01112344555543 3


Q ss_pred             EecCCCeEEEEecC------------------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCC
Q 036585          158 GYEKGPLDIFSVGG------------------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRN  219 (304)
Q Consensus       158 ~~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  219 (304)
                      +...+.+..++...                  ....|.++...++|. |.+|+.++-|..||..+++.............
T Consensus       329 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~  407 (781)
T 3v9f_A          329 GTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSN  407 (781)
T ss_dssp             EEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCS
T ss_pred             EecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCc
Confidence            44355554443221                  124577888877776 56677667788999765433221111112346


Q ss_pred             cceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee---ccCCCCceEEeCCCCcEEEEecCceEEeccCCccccc
Q 036585          220 STLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM---SFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGA  294 (304)
Q Consensus       220 ~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~~~~  294 (304)
                      .|.++...+++.+.+ |+.++-|..+|.++++.. .+.   .....|.++...+++.+.+.....+..++.+..++..
T Consensus       408 ~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~  483 (781)
T 3v9f_A          408 SVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIH  483 (781)
T ss_dssp             BEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCE
T ss_pred             ceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEe
Confidence            788898888886554 555566999998766542 222   1345788999888888766655337778776655443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.75  E-value=9.1e-06  Score=63.52  Aligned_cols=194  Identities=11%  Similarity=0.185  Sum_probs=122.9

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccC----CCe--EEEEecCCC--CCceEEEEcc--Cceeee
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSH----PTT--VIYSSKNGW--DESLRLLSLH--DNKYSR   96 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l~~~~~~~~--d~~i~vwd~~--~~~~~~   96 (304)
                      ..+++.....+-+.+||+ +++.++.+..  +.++.+..-|+    ++.  ++.++.. .  +++|.+|++.  +++ +.
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R-~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNR-SEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEEC-STTCCEEEEEEECTTTCC-EE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCC-CCCCCeEEEEEECCCCCc-ee
Confidence            445666667788999999 7898888864  35666666552    222  4555542 2  4789999773  333 43


Q ss_pred             eccc------cc-ccEEEEEE--cCC-CC-EEEEcccCCeEEEEeCCc-------ceeeceEEEeccceeEecCCCeEEE
Q 036585           97 YFKG------HH-DRVVLLSL--CSS-KD-CFISGSLDRTVLLWDQRA-------EKCQGLLRVQGRPAAAYDDQGLVFG  158 (304)
Q Consensus        97 ~~~~------~~-~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  158 (304)
                      .+..      .. ..+..+++  +|. +. ++++...+|.+..|++..       .+.++.+..                
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l----------------  178 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM----------------  178 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC----------------
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC----------------
Confidence            3321      11 45666777  664 43 677888889999998842       222333322                


Q ss_pred             ecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC-----CCceeEEEEeCCCCCCcceEEEE--cCCCc
Q 036585          159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF-----RGTLLSTYNVKPVSRNSTLEASF--SPEGM  231 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-----~~~~~~~~~~~~~~~~~i~~~~~--s~~~~  231 (304)
                                    .+.+..+...+....|+++-++.-|..|+.+     +++.+..+.. ......+..|++  .++++
T Consensus       179 --------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~  243 (355)
T 3amr_A          179 --------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGK  243 (355)
T ss_dssp             --------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGC
T ss_pred             --------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCC
Confidence                          2356778888888889999998778888855     2334333221 112245777877  45555


Q ss_pred             -EEEEec-CCCcEEEEecC-CCceeeee
Q 036585          232 -FVISGS-GDGSVHAWSVR-SGKEVASW  256 (304)
Q Consensus       232 -~l~~~~-~dg~i~v~d~~-~~~~~~~~  256 (304)
                       ||++++ .++...+||.+ +.+.+..+
T Consensus       244 gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          244 GYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence             666555 67789999996 56666666

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.69  E-value=5.4e-05  Score=66.64  Aligned_cols=215  Identities=11%  Similarity=-0.012  Sum_probs=125.0

Q ss_pred             EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc----eeeeeccccccc
Q 036585           29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN----KYSRYFKGHHDR  104 (304)
Q Consensus        29 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~  104 (304)
                      +|+.+. ...|+..++...+....+. ....+..|+|.+....|+.+...  .+.|+.+++...    .....+......
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~--~~~I~~~~l~g~~~~~~~~~vi~~~l~~  472 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQA  472 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSC
T ss_pred             cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeecc--ceeEEEEeccCCCCCcceeEEEecCCCC
Confidence            444443 3458888877655443333 33467889999877777766543  778888888753    222223323345


Q ss_pred             EEEEEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec
Q 036585          105 VVLLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN  183 (304)
Q Consensus       105 v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (304)
                      ...|++.+.++ ++++-...+.|.+.++........+.                             ........|+++|
T Consensus       473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-----------------------------~~l~~P~gIaVDp  523 (791)
T 3m0c_C          473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-----------------------------ENGSKPRAIVVDP  523 (791)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-----------------------------CTTCCEEEEEEET
T ss_pred             cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-----------------------------CCCCCcceEEEec
Confidence            56788887664 44454567789888887543222211                             1223467899999


Q ss_pred             CCcEEEEeeC--CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecCCCceeeeeecc-
Q 036585          184 DGRLMLLTTM--EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVRSGKEVASWMSF-  259 (304)
Q Consensus       184 ~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~-  259 (304)
                      .+..|+.+..  .+.|...++... ....+..  ..-.....|++++.+..|+.+. ..+.|...++........+... 
T Consensus       524 ~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~--~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~  600 (791)
T 3m0c_C          524 VHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK  600 (791)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSC-CEEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT
T ss_pred             CCCCEEEecCCCCCeEEEEecCCC-ceEEEEe--CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCC
Confidence            7666666543  378999998643 3333331  2335678899998777777664 4567999998544333222221 


Q ss_pred             -CCCCceEEeCCCCcEEEEecCc
Q 036585          260 -DTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       260 -~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                       -....+|++.  +..|+.+...
T Consensus       601 ~l~~P~glav~--~~~lYwtD~~  621 (791)
T 3m0c_C          601 RLAHPFSLAVF--EDKVFWTDII  621 (791)
T ss_dssp             TTSSEEEEEEE--TTEEEEEETT
T ss_pred             ccCCCCEEEEe--CCEEEEEECC
Confidence             1223456653  3345544444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.61  E-value=0.00019  Score=63.17  Aligned_cols=204  Identities=8%  Similarity=-0.016  Sum_probs=117.9

Q ss_pred             eEeeccc-CcEEEEeeCCCeEEEEecCCc----ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           20 ILQSMEV-GIYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        20 ~i~~~~~-~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      .+.+.+. +.++++-...+.|+.+++...    .....+.........|++.+.+..|+.+...  .+.|.+.++.....
T Consensus       428 gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~--~~~I~v~~ldG~~~  505 (791)
T 3m0c_C          428 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVKR  505 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSSE
T ss_pred             EEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecC--CCeEEEEeCCCCeE
Confidence            3445543 344445455677887777642    2222333233456789999888777777653  78999999876543


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEccc--CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD  172 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (304)
                      ...+.........|++.|....|+.+..  .+.|...++........+.                             ..
T Consensus       506 ~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-----------------------------~~  556 (791)
T 3m0c_C          506 KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-----------------------------EN  556 (791)
T ss_dssp             EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-----------------------------SS
T ss_pred             EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-----------------------------CC
Confidence            3333333446789999997655555442  2567777765432221111                             12


Q ss_pred             CCCceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecCCC
Q 036585          173 ISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVRSG  250 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~  250 (304)
                      ....+.|++++.+..|+.+ ...+.|..+++........... ...-.....|++.  +.+|+.+ ...+.|...|..++
T Consensus       557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC-CCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCC
Confidence            2356789999776666665 4457899999865443333331 1122234456663  3345444 45677888887777


Q ss_pred             ceeeeee
Q 036585          251 KEVASWM  257 (304)
Q Consensus       251 ~~~~~~~  257 (304)
                      +.+..+.
T Consensus       634 ~~~~~l~  640 (791)
T 3m0c_C          634 SDVNLLA  640 (791)
T ss_dssp             CCCEEEE
T ss_pred             cceEEee
Confidence            6655553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.59  E-value=0.00011  Score=57.62  Aligned_cols=213  Identities=10%  Similarity=0.023  Sum_probs=125.7

Q ss_pred             eEeeccc-CcEEEEeeCCCeEEEEecCCcceee-eecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           20 ILQSMEV-GIYLVTASDDESIRLYDVTAATCLK-TINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        20 ~i~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      .+.+.+. +.++.+-...+.|..++........ .+...-.....+++.+.+..|+.+...  .+.|.++++........
T Consensus        39 ~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~--~~~I~~~~~dG~~~~~l  116 (318)
T 3sov_A           39 AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE--TNRIEVSNLDGSLRKVL  116 (318)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEE
T ss_pred             EEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECC--CCEEEEEECCCCcEEEE
Confidence            4566664 4455555567789889887653221 222222356788998866666665432  78999999875433222


Q ss_pred             cccccccEEEEEEcCCCCEEEEcc--cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD  175 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (304)
                      +.........+++.|.+..|+.+.  ..+.|...++..... ..+.                            ......
T Consensus       117 ~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~----------------------------~~~l~~  167 (318)
T 3sov_A          117 FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIII----------------------------NSEIYW  167 (318)
T ss_dssp             ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEE----------------------------CSSCSC
T ss_pred             EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEE----------------------------ECCCCC
Confidence            323345668899998665555554  246777777653221 1111                            011134


Q ss_pred             ceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585          176 ANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA  254 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~  254 (304)
                      .+.++++|++..|+.+ +..+.|..+|+... ....+..  ........+++.. +..+.+-...+.|..++..+++...
T Consensus       168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~--~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~  243 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVK--GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLR  243 (318)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC--SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             ccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEec--CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceE
Confidence            5789999976666655 45678999998643 3333331  2334556677753 3445555567889999987887665


Q ss_pred             eeeccCCCCceEE
Q 036585          255 SWMSFDTEPPVIK  267 (304)
Q Consensus       255 ~~~~~~~~i~~~~  267 (304)
                      .+......+.+++
T Consensus       244 ~i~~~~~~P~~i~  256 (318)
T 3sov_A          244 EIHSDIFSPMDIH  256 (318)
T ss_dssp             EEECCCSSCCCEE
T ss_pred             EEeCCCCCCcEEE
Confidence            5543333334444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.57  E-value=1.2e-06  Score=76.24  Aligned_cols=217  Identities=7%  Similarity=-0.029  Sum_probs=119.0

Q ss_pred             eEeecccCcEEEEe-eCCCeEEEEecCC----cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           20 ILQSMEVGIYLVTA-SDDESIRLYDVTA----ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        20 ~i~~~~~~~~l~~~-~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      .+.+.+.+..|+.+ ...+.|+.+++.+    ......+.........|++.+.+..|+.+...  .+.|.++++.....
T Consensus       410 gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~--~~~I~v~d~dg~~~  487 (699)
T 1n7d_A          410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVKR  487 (699)
T ss_dssp             CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTT--TSCEEEEBSSSCCE
T ss_pred             EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEecc--CCeEEEEecCCCce
Confidence            45555555555444 4557788888764    22222222222245678888666666655432  78899999876543


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEccc--CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCC
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGD  172 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (304)
                      ...+.........+++.|.+.+|+.+..  .+.|..+++..... ..+.                            ...
T Consensus       488 ~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~----------------------------~~~  538 (699)
T 1n7d_A          488 KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLV----------------------------TEN  538 (699)
T ss_dssp             EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEES----------------------------CSS
T ss_pred             EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEE----------------------------eCC
Confidence            3333322234567888886555544432  25666666543211 1110                            011


Q ss_pred             CCCceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCc
Q 036585          173 ISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGK  251 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~  251 (304)
                      ....+.|+++|++..|+.+ ...+.|..+++.... ...+............+++..+ .++++....+.|..+|..+++
T Consensus       539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~  616 (699)
T 1n7d_A          539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS  616 (699)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred             CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence            2345679999876555554 456789999986433 3333211111223345666544 444455567889999988888


Q ss_pred             eeeeeeccCCCCceEEeC
Q 036585          252 EVASWMSFDTEPPVIKWA  269 (304)
Q Consensus       252 ~~~~~~~~~~~i~~~~~~  269 (304)
                      .+..+......+..|++.
T Consensus       617 ~~~~i~~~~~~P~~i~v~  634 (699)
T 1n7d_A          617 DVNLLAENLLSPEDMVLF  634 (699)
T ss_dssp             EEECCCTTCSSCCCCCBC
T ss_pred             ceEEeecCCCCCcEEEEe
Confidence            777664433334555443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.55  E-value=5.1e-05  Score=59.38  Aligned_cols=187  Identities=12%  Similarity=0.162  Sum_probs=113.8

Q ss_pred             CCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCC----CC---EEEEcc-c--CCeEEEEeCC--ccee
Q 036585           69 PTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSS----KD---CFISGS-L--DRTVLLWDQR--AEKC  136 (304)
Q Consensus        69 ~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~-~--dg~i~iwd~~--~~~~  136 (304)
                      ...++....   .+-+.+||+ +++.++.+..  +.+..+...|+    ++   ++++.. .  +.+|.+|++.  ++. 
T Consensus        40 ~s~ii~t~k---~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-  112 (355)
T 3amr_A           40 NSKLITTNK---KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-  112 (355)
T ss_dssp             GCEEEEEET---TTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-
T ss_pred             ccEEEEEcC---CCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-
Confidence            344444444   789999999 7888887753  56667766653    22   223333 3  5789999763  332 


Q ss_pred             eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEE--ecC-Cc-EEEEeeCCCeEEEEEcC-------CC
Q 036585          137 QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF--SND-GR-LMLLTTMEGHIHVLDSF-------RG  205 (304)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~~~d~~-------~~  205 (304)
                      +..+.....+.                      ......+..+++  +|. ++ ++++...+|.+..|++.       +.
T Consensus       113 l~~i~~~~~pv----------------------~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~  170 (355)
T 3amr_A          113 LQSMTDPDHPI----------------------ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISG  170 (355)
T ss_dssp             EEECSCTTSCE----------------------ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEE
T ss_pred             eeeccccccCc----------------------CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccc
Confidence            11110000000                      001134555676  664 43 67888889999999882       34


Q ss_pred             ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecC-----CCceeeeee-c-cCCCCceEEe--CCCCc-EE
Q 036585          206 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR-----SGKEVASWM-S-FDTEPPVIKW--APGSL-MF  275 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~-----~~~~~~~~~-~-~~~~i~~~~~--~~~~~-~l  275 (304)
                      +.++++.    ....+-.+...+....|+.+-++.-|..++.+     +++.+..+. + ....+..|+.  .++++ +|
T Consensus       171 ~lVR~f~----lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL  246 (355)
T 3amr_A          171 KKVRAFK----MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL  246 (355)
T ss_dssp             EEEEEEE----CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred             eEEEEec----CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence            5566666    34577888999988899999988777777754     233444432 2 2236778887  45555 66


Q ss_pred             EEecCc---eEEeccC
Q 036585          276 VTGSSE---LSFWIPD  288 (304)
Q Consensus       276 ~s~~~d---~~iw~~~  288 (304)
                      ++++..   ..+|+.+
T Consensus       247 ivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          247 MASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEGGGTEEEEEESS
T ss_pred             EEEcCCCCEEEEEECC
Confidence            655533   8888875

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.54  E-value=0.00011  Score=58.48  Aligned_cols=102  Identities=9%  Similarity=0.021  Sum_probs=60.4

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcce--eeeec---ccccceeEEEEccC---CCeEEEEecCCCC---CceE
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATC--LKTIN---SKKYGVDLVCFTSH---PTTVIYSSKNGWD---ESLR   85 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~~~~d---~~i~   85 (304)
                      ++..+.+.++|+++++ ..+|.|++++  +++.  +..+.   ........++++|+   +..|+++.....+   ..|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4567889999985555 5669999998  3332  22221   12346889999998   5566555431001   6788


Q ss_pred             EEEccCce-----ee-eecc---cccccEEEEEEcCCCCEEEEcc
Q 036585           86 LLSLHDNK-----YS-RYFK---GHHDRVVLLSLCSSKDCFISGS  121 (304)
Q Consensus        86 vwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~  121 (304)
                      .++...++     .+ ..+.   ........++|.|+|.++++.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            88876431     11 1122   1111235789999997666643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.50  E-value=3.5e-06  Score=73.39  Aligned_cols=201  Identities=11%  Similarity=-0.004  Sum_probs=114.0

Q ss_pred             CCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC----ceeeeecccccccEEEEEEc
Q 036585           36 DESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD----NKYSRYFKGHHDRVVLLSLC  111 (304)
Q Consensus        36 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~  111 (304)
                      ...|++.++.+.+....+... ..+..++|.+....|+.+...  .+.|+.+++..    ......+.........+++.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~--~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD  461 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  461 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTT--TTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred             ccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecC--CCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence            356888888766554444332 356789999988888777653  78999999875    22222222112234567777


Q ss_pred             CC-CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEE
Q 036585          112 SS-KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLL  190 (304)
Q Consensus       112 ~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (304)
                      +. ++++++-...+.|.++++........+.                             ........++++|.+.+|+.
T Consensus       462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-----------------------------~~~~~P~giavDp~~g~ly~  512 (699)
T 1n7d_A          462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-----------------------------EQGSKPRAIVVDPVHGFMYW  512 (699)
T ss_dssp             CSSSBCEECCTTTSCEEEEBSSSCCEEEECC-----------------------------CSSCCCCCEECCSSSSCCEE
T ss_pred             eeCCcEEEEeccCCeEEEEecCCCceEEEEe-----------------------------CCCCCcceEEEccCCCcEEE
Confidence            54 4445554556788888876543221111                             11134567889887665555


Q ss_pred             eeC--CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecCCCceeeeee--ccCCCCce
Q 036585          191 TTM--EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVRSGKEVASWM--SFDTEPPV  265 (304)
Q Consensus       191 ~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~  265 (304)
                      +..  .+.|..+++... ....+..  ..-.....|+|+|++..|+.+ ...+.|.++++........+.  ........
T Consensus       513 td~~~~~~I~~~~~dG~-~~~~l~~--~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~g  589 (699)
T 1n7d_A          513 TDWGTPAKIKKGGLNGV-DIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS  589 (699)
T ss_dssp             CCCSSSCCEEBCCSSSC-CCCEESC--SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCC
T ss_pred             cccCCCCeEEEEeCCCC-CeeEEEe--CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceE
Confidence            443  368888887532 2222211  123456679999976665555 456789999986433222221  11233456


Q ss_pred             EEeCCC
Q 036585          266 IKWAPG  271 (304)
Q Consensus       266 ~~~~~~  271 (304)
                      |++..+
T Consensus       590 lavd~~  595 (699)
T 1n7d_A          590 LAVFED  595 (699)
T ss_dssp             CEEETT
T ss_pred             eEEECC
Confidence            666554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.48  E-value=0.00015  Score=59.44  Aligned_cols=197  Identities=10%  Similarity=0.119  Sum_probs=115.0

Q ss_pred             ceeEEEEccC--CCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccC---C-eEEEEeCC
Q 036585           59 GVDLVCFTSH--PTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLD---R-TVLLWDQR  132 (304)
Q Consensus        59 ~v~~~~~~~~--~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g-~i~iwd~~  132 (304)
                      ....++|.|+  ...|+.+..   .+.|+.+|..+++...... .......++++++++++++-...   . .+...+..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~---~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQ---RDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECB---TSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeC---CCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence            4568999984  556777664   4899999998776554433 44568899999999944443311   1 12222221


Q ss_pred             cceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCceeEEE
Q 036585          133 AEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTY  211 (304)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~  211 (304)
                      .. .......                            ........++++| +|.++++-..++.|+.+|..++.....+
T Consensus       216 ~~-~~~~~~~----------------------------~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~  266 (433)
T 4hw6_A          216 SG-FTERLSL----------------------------CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE  266 (433)
T ss_dssp             GT-TCCEEEE----------------------------EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE
T ss_pred             CC-eeccccc----------------------------cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE
Confidence            11 1000000                            0113446688999 6766556667789999998877763333


Q ss_pred             EeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecC--CCce--eeeeecc---------------CCCCceEEe---
Q 036585          212 NVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVR--SGKE--VASWMSF---------------DTEPPVIKW---  268 (304)
Q Consensus       212 ~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~--~~~~--~~~~~~~---------------~~~i~~~~~---  268 (304)
                      ... ........++|+|++++|+.+ ...+.|+.+++.  ++..  ...+.+.               -.....+++   
T Consensus       267 ~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n  345 (433)
T 4hw6_A          267 VMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKN  345 (433)
T ss_dssp             EEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEEC
T ss_pred             ecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcc
Confidence            221 122233469999999966555 456789998865  2321  1122111               123567899   


Q ss_pred             ------CCCCcEEEEecCc--eEEeccCC
Q 036585          269 ------APGSLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       269 ------~~~~~~l~s~~~d--~~iw~~~~  289 (304)
                            .+++.+.++-...  |+.++.+.
T Consensus       346 ~~y~~dd~~g~lyvaD~~n~~I~~~~~~G  374 (433)
T 4hw6_A          346 EAYAGEEDEYDFYFCDRDSHTVRVLTPEG  374 (433)
T ss_dssp             GGGTTSSCCEEEEEEETTTTEEEEECTTS
T ss_pred             ccccccCCCCcEEEEECCCCEEEEECCCC
Confidence                  6777666655444  66666543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.48  E-value=0.00028  Score=60.59  Aligned_cols=210  Identities=9%  Similarity=-0.022  Sum_probs=118.2

Q ss_pred             CCeEEEEecCCcc-eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee-eeecccccccEEEEEEcCC
Q 036585           36 DESIRLYDVTAAT-CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-SRYFKGHHDRVVLLSLCSS  113 (304)
Q Consensus        36 d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~  113 (304)
                      ...|+..++.... ....+......+..++|++.+..|+.+...  .+.|..+++..... ...+.........+++.+.
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~--~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~   94 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   94 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETT--TTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECC--CCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence            4568888887543 222222233457889999988887777653  77888888876532 2223322346788999985


Q ss_pred             CC-EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee
Q 036585          114 KD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT  192 (304)
Q Consensus       114 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  192 (304)
                      +. ++++-...+.|.+.++..........                             ........|++.|.+..|+.+.
T Consensus        95 ~~~ly~~d~~~~~I~v~~~dG~~~~~l~~-----------------------------~~l~~P~~Iavdp~~g~ly~tD  145 (619)
T 3s94_A           95 GEKLYWTDSETNRIEVSNLDGSLRKVLFW-----------------------------QELDQPRAIALDPSSGFMYWTD  145 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEEC-----------------------------SSCSCCCCEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEECCCCCEEEEEe-----------------------------CCCCCCceEEEecCCCeEEEec
Confidence            55 44555567889999887543221111                             1223467799999766566554


Q ss_pred             C--CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecCCCceeeeeeccCCCCceEEeC
Q 036585          193 M--EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWA  269 (304)
Q Consensus       193 ~--dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  269 (304)
                      .  .+.|...++.. .....+..  ..-.....++++++++.|+.+ ...+.|..+|+..........+......+|++.
T Consensus       146 ~g~~~~I~r~~~dG-~~~~~l~~--~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~  222 (619)
T 3s94_A          146 WGEVPKIERAGMDG-SSRFIIIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF  222 (619)
T ss_dssp             CSSSCEEEEEETTS-CSCEEEEC--SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEES
T ss_pred             cCCCCEEEEEECCC-CceEEEEe--CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEe
Confidence            3  46788788653 33333331  234467889999977666666 456789999986543322222222334677776


Q ss_pred             CCCcEEEEecCc
Q 036585          270 PGSLMFVTGSSE  281 (304)
Q Consensus       270 ~~~~~l~s~~~d  281 (304)
                      .+  .|+.+...
T Consensus       223 ~~--~ly~td~~  232 (619)
T 3s94_A          223 ED--ILYWTDWS  232 (619)
T ss_dssp             SS--EEEEECTT
T ss_pred             CC--EEEEecCC
Confidence            55  44444433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.47  E-value=0.00036  Score=57.70  Aligned_cols=253  Identities=9%  Similarity=0.051  Sum_probs=135.0

Q ss_pred             eeeEeecc-c-CcEEEEeeCCCeEEEEecCCcceeeeeccc---ccceeEEEE-------ccCCCeEEEEecCCC----C
Q 036585           18 EEILQSME-V-GIYLVTASDDESIRLYDVTAATCLKTINSK---KYGVDLVCF-------TSHPTTVIYSSKNGW----D   81 (304)
Q Consensus        18 ~~~i~~~~-~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~~~~----d   81 (304)
                      +..+.+.| + ++++++-...+.|++.|.+++.....+...   ......++|       ++++..|+++...+.    .
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            45677887 3 444444444567999998876665444332   235789999       999997887775210    1


Q ss_pred             CceEEEEccC-ceee-----eecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCC-------cceeeceEEEeccce
Q 036585           82 ESLRLLSLHD-NKYS-----RYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQR-------AEKCQGLLRVQGRPA  147 (304)
Q Consensus        82 ~~i~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~  147 (304)
                      ..|.+++... ++..     ..+... .....++++| ++.++++-..++.|..+|+.       ++...........  
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~--  297 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP--  297 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT--
T ss_pred             ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc--
Confidence            1355665433 2221     122211 2335678899 45556666678889999987       3432000000000  


Q ss_pred             eEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEe-eCCCeEEEEEcC--CCcee--EEEEeCCCCC----
Q 036585          148 AAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSF--RGTLL--STYNVKPVSR----  218 (304)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~--~~~~~--~~~~~~~~~~----  218 (304)
                            +       ..-.++.+ ........++|+|+|+.|+++ +....|+.++..  .+...  ..+....+..    
T Consensus       298 ------g-------~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~D  363 (496)
T 3kya_A          298 ------N-------TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRD  363 (496)
T ss_dssp             ------T-------TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBC
T ss_pred             ------c-------ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccC
Confidence                  0       00000111 122345789999999965555 456788886653  33221  2232210000    


Q ss_pred             --------Ccce-EEEEc-------CCCcEEEEecCCCcEEEEecCCCceeeeeecc-----------------------
Q 036585          219 --------NSTL-EASFS-------PEGMFVISGSGDGSVHAWSVRSGKEVASWMSF-----------------------  259 (304)
Q Consensus       219 --------~~i~-~~~~s-------~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----------------------  259 (304)
                              .... .++..       +++.++++=..++.|+.++ .++. +.++-+.                       
T Consensus       364 G~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a  441 (496)
T 3kya_A          364 DVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVA  441 (496)
T ss_dssp             CBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTC
T ss_pred             CcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhh
Confidence                    1223 34554       4566666666778899998 4553 3333221                       


Q ss_pred             -CCCCceEEeCCC-CcEEEEecCc--eEEeccCC
Q 036585          260 -DTEPPVIKWAPG-SLMFVTGSSE--LSFWIPDL  289 (304)
Q Consensus       260 -~~~i~~~~~~~~-~~~l~s~~~d--~~iw~~~~  289 (304)
                       -.....|+++++ +.++++=..+  |+.++++.
T Consensus       442 ~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~  475 (496)
T 3kya_A          442 RFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ  475 (496)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             hcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence             023568999997 5544443333  55555544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.44  E-value=0.00031  Score=55.36  Aligned_cols=228  Identities=10%  Similarity=0.041  Sum_probs=119.2

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeec---ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee-e
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN---SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-S   95 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~-~   95 (304)
                      .+.+.+ +..++ ++..+.|.. ..+.++.-..+.   .+...+..+.+.+++..++++.    ++.|.. ....++. .
T Consensus        84 ~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~g~v~~-S~DgG~tW~  155 (327)
T 2xbg_A           84 SVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN----VGAIYR-TKDSGKNWQ  155 (327)
T ss_dssp             EEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET----TCCEEE-ESSTTSSEE
T ss_pred             EEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC----CccEEE-EcCCCCCCE
Confidence            344443 44444 455664443 223333322222   1234567787777666555543    554422 1222321 1


Q ss_pred             eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC
Q 036585           96 RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD  175 (304)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (304)
                      .........+..+.+.|++.+++.+...+..+-.|-. +..-..+..                            .....
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~----------------------------~~~~~  206 (327)
T 2xbg_A          156 ALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTAWEPHNR----------------------------TTSRR  206 (327)
T ss_dssp             EEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSSCEEEEC----------------------------CSSSC
T ss_pred             EeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCceeECCC----------------------------CCCCc
Confidence            1222345578899999988877776554444444421 111111110                            12245


Q ss_pred             ceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC-CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585          176 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK-PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA  254 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~  254 (304)
                      +..+.+.+++..+ +.+.+|.+++.+...++.-..+... ......+..+.+.+++..++++. +|.| .+....++.-.
T Consensus       207 ~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~  283 (327)
T 2xbg_A          207 LHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQ  283 (327)
T ss_dssp             EEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCE
T ss_pred             cceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccE
Confidence            6778888888755 4556788777643323332222211 01223578899998887777665 6666 34445555444


Q ss_pred             eee---ccCCCCceEEeCCCCcEEEEecCceEEeccC
Q 036585          255 SWM---SFDTEPPVIKWAPGSLMFVTGSSELSFWIPD  288 (304)
Q Consensus       255 ~~~---~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~  288 (304)
                      .+.   .....+.++.|.+++..++.+ .+..|+.++
T Consensus       284 ~~~~~~~~~~~~~~v~~~~~~~~~~~G-~~G~i~~~~  319 (327)
T 2xbg_A          284 QDVDVKKVPSNFYKILFFSPDQGFILG-QKGILLRYV  319 (327)
T ss_dssp             ECGGGTTSSSCCCEEEEEETTEEEEEC-STTEEEEEC
T ss_pred             EcCccCCCCCCeEEEEEECCCceEEEc-CCceEEEEc
Confidence            443   234578899998666655544 454555544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.42  E-value=5.1e-05  Score=65.87  Aligned_cols=228  Identities=11%  Similarity=0.062  Sum_probs=123.5

Q ss_pred             EEEEcc-CCCeEEEEecCCC--------CCceEEEEccCceeee--ecc-cccccEEEEEEcCCCCEEEEccc-CCeEEE
Q 036585           62 LVCFTS-HPTTVIYSSKNGW--------DESLRLLSLHDNKYSR--YFK-GHHDRVVLLSLCSSKDCFISGSL-DRTVLL  128 (304)
Q Consensus        62 ~~~~~~-~~~~l~~~~~~~~--------d~~i~vwd~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i  128 (304)
                      ..++.+ +++.++.|+....        ...+.+||..+++...  .+. .+.....++++.+++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            567777 7888888775210        1158899998876332  221 12222335677789999999884 458999


Q ss_pred             EeCCcceeeceEEEecc---ceeEecCCCeEEEecC--------CCeEEEEecCCCCCceE---------------EEEe
Q 036585          129 WDQRAEKCQGLLRVQGR---PAAAYDDQGLVFGYEK--------GPLDIFSVGGDISDANV---------------VKFS  182 (304)
Q Consensus       129 wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~---------------~~~~  182 (304)
                      ||..+.+....-.....   .....-+++.++....        ..+.+|+.....  -..               ..+.
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~--W~~~~~~~~~p~~~~~~~~~~~  347 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT--WTSLPNAKVNPMLTADKQGLYR  347 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE--EEEETTSCSGGGCCCCTTGGGT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc--ceeCCCccccccccccccceee
Confidence            99987754433221111   1233333444432221        345555543211  000               0112


Q ss_pred             cCCcEEEEeeCCC---------eEEEEEcCCCceeEEEEeCCC------CCCcceEEEEcC-CCcEEEEecCCC------
Q 036585          183 NDGRLMLLTTMEG---------HIHVLDSFRGTLLSTYNVKPV------SRNSTLEASFSP-EGMFVISGSGDG------  240 (304)
Q Consensus       183 ~~~~~l~~~~~dg---------~i~~~d~~~~~~~~~~~~~~~------~~~~i~~~~~s~-~~~~l~~~~~dg------  240 (304)
                      .++..++.++.+|         .+..||..+............      ....-.++.|.. ++++++.|+.++      
T Consensus       348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~  427 (656)
T 1k3i_A          348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA  427 (656)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred             cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence            3445555554443         567888877765443332111      111233444543 778888887532      


Q ss_pred             -----cEEEEecCCCceeeee--eccCCC-CceEEeCCCCcEEEEecCc-------------eEEeccCCcc
Q 036585          241 -----SVHAWSVRSGKEVASW--MSFDTE-PPVIKWAPGSLMFVTGSSE-------------LSFWIPDLSK  291 (304)
Q Consensus       241 -----~i~v~d~~~~~~~~~~--~~~~~~-i~~~~~~~~~~~l~s~~~d-------------~~iw~~~~~~  291 (304)
                           .|.+||..+.+-....  ..+... -.+++..|++++++.|+.+             +.+|+.+.++
T Consensus       428 ~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          428 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence                 5788888765533221  112222 2455677899999998732             6778776544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.41  E-value=6.8e-05  Score=61.49  Aligned_cols=155  Identities=10%  Similarity=0.151  Sum_probs=98.5

Q ss_pred             ceeEEEEcc-CCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccC-C----eEEEEeCC
Q 036585           59 GVDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLD-R----TVLLWDQR  132 (304)
Q Consensus        59 ~v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g----~i~iwd~~  132 (304)
                      ....++++| ++..|+++..   .+.|+.+|+.+++...... .......++|++++++|+.+... +    .+...+. 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~---~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGE---QHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEB---TEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred             CCCEEEECCCCCCeEEEEeC---CCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence            356889998 5667777765   4889999988766443333 44567899999999966655432 1    2333332 


Q ss_pred             cceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec-CCcEEEEeeCCCeEEEEEcCCCceeEEE
Q 036585          133 AEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN-DGRLMLLTTMEGHIHVLDSFRGTLLSTY  211 (304)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~  211 (304)
                      .+.........                            .......++++| +|.++++-..++.|+.++...+......
T Consensus       213 ~g~~~~~~~l~----------------------------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~  264 (430)
T 3tc9_A          213 ESGFKVITELT----------------------------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF  264 (430)
T ss_dssp             GGTSCSEEEEE----------------------------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCceeeeeeec----------------------------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence            22221110000                            112456788999 6776666667789999998876543333


Q ss_pred             EeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecC
Q 036585          212 NVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVR  248 (304)
Q Consensus       212 ~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~  248 (304)
                      ..  ........++|+|++++|+.+ ...+.|..++..
T Consensus       265 ~~--~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          265 TI--QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EC--SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             Ec--CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            32  122456789999999965555 467789998865

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.39  E-value=7.2e-05  Score=57.98  Aligned_cols=175  Identities=13%  Similarity=0.095  Sum_probs=111.6

Q ss_pred             cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee-ecccc------cccEEEEEE---cCCCCEEEEcc----
Q 036585           56 KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR-YFKGH------HDRVVLLSL---CSSKDCFISGS----  121 (304)
Q Consensus        56 ~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~-~~~~~------~~~v~~~~~---~~~~~~l~~~~----  121 (304)
                      ...-..+++|.+....++.++.-  .++|..|+...+.... .+..-      ...+..+.|   .|+++++++..    
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~--~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a   88 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLY--KGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS   88 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETT--TTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred             cccCCcCccCcCCCCEEEEEecc--CCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence            33445678998877777777642  8999999997654322 23221      124689999   58877776533    


Q ss_pred             ---------cCCeEEEEeCC---cceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC-CCCCceEEEEecCCcEE
Q 036585          122 ---------LDRTVLLWDQR---AEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG-DISDANVVKFSNDGRLM  188 (304)
Q Consensus       122 ---------~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l  188 (304)
                               .+..+..||+.   +++............- +.                ...+ .......++..++|+..
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~-~~----------------~~~g~~~~~~nDvavD~~GnaY  151 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDE-FE----------------KKAGKRPFGVVQSAQDRDGNSY  151 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHH-HH----------------HHHSSCCEEEEEEEECTTSCEE
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccc-cc----------------ccccccccCCceeEECCCCCEE
Confidence                     25779999998   7766655443211000 00                0000 11236789999999988


Q ss_pred             EEeeCC-CeEEEEEcCCCceeEEEEeCC---CCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585          189 LLTTME-GHIHVLDSFRGTLLSTYNVKP---VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG  250 (304)
Q Consensus       189 ~~~~~d-g~i~~~d~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~  250 (304)
                      ++++.. +.|..++... +....+....   ......+.++++|+|+.|++....|.+..+|+++.
T Consensus       152 Vt~s~~~~~I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          152 VAFALGMPAIARVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEEESSCEEEEECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             EeCCCCCCeEEEEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            888888 8888888643 3333332111   12234678999999998888877999999998743

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.38  E-value=0.00034  Score=54.33  Aligned_cols=228  Identities=15%  Similarity=0.180  Sum_probs=113.2

Q ss_pred             ccCcEEEEee-CC-----CeEEEEecCCcceee--eecccccceeEEEEccCCCeEEEEecCC--CCCceEEEEccCce-
Q 036585           25 EVGIYLVTAS-DD-----ESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNK-   93 (304)
Q Consensus        25 ~~~~~l~~~~-~d-----~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd~~~~~-   93 (304)
                      .++.+++.|+ .+     ..+.+||..+.+-..  .+....... ++ ...++..++.|+..+  ....+.+||+.+++ 
T Consensus        13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~-~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-AS-VSLHDRIYVIGGYDGRSRLSSVECLDYTADED   90 (301)
T ss_dssp             CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EE-EEETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred             CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cE-EEECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence            3456777777 33     368889987664322  122111111 22 223566677776421  12468899988765 


Q ss_pred             --eee--ecccccccEEEEEEcCCCCEEEEcccC-----CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585           94 --YSR--YFKGHHDRVVLLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL  164 (304)
Q Consensus        94 --~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (304)
                        -..  .+........++.+  ++..++.|+.+     ..+.+||+.+.+....-..+.                    
T Consensus        91 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--------------------  148 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT--------------------  148 (301)
T ss_dssp             CCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS--------------------
T ss_pred             CeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC--------------------
Confidence              222  12111111122222  56677777643     357888887765433211110                    


Q ss_pred             EEEEecCCCCCceEEEEecCCcEEEEeeCC-----CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585          165 DIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD  239 (304)
Q Consensus       165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  239 (304)
                             .......+.  -+++.++.|+.+     ..+.+||+.+.+....-.. +........+.  .++++++.|+.+
T Consensus       149 -------~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~--~~~~i~v~GG~~  216 (301)
T 2vpj_A          149 -------AREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM-ATKRSGAGVAL--LNDHIYVVGGFD  216 (301)
T ss_dssp             -------CCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEE--ETTEEEEECCBC
T ss_pred             -------CcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCC-CcccccceEEE--ECCEEEEEeCCC
Confidence                   001111122  267777777654     4689999888765443211 11112222222  266777777654


Q ss_pred             -----CcEEEEecCCCcee--eeeeccCCCCceEEeCCCCcEEEEecCc-------eEEeccCCc
Q 036585          240 -----GSVHAWSVRSGKEV--ASWMSFDTEPPVIKWAPGSLMFVTGSSE-------LSFWIPDLS  290 (304)
Q Consensus       240 -----g~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~d-------~~iw~~~~~  290 (304)
                           ..+.+||+.+.+-.  ..+.........+.  -++++++.|+.+       +.+|+++.+
T Consensus       217 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          217 GTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence                 46899999775432  22211111112222  266777777643       455665544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.35  E-value=0.00099  Score=57.32  Aligned_cols=205  Identities=7%  Similarity=-0.030  Sum_probs=126.1

Q ss_pred             EEEEeeCCCeEEEEecCCcceeeeecc-cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEE
Q 036585           29 YLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVL  107 (304)
Q Consensus        29 ~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  107 (304)
                      +|+.+ ....|+..++++.+....+.. .-..+..++|.+....|+.+...  ++.|..+++........+.........
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~--~~~I~r~~~~g~~~~~v~~~g~~~P~G   84 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS--LKTISRAFMNGSALEHVVEFGLDYPEG   84 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECC--CCeEEEEECCCCCcEEEEeCCCCCcce
Confidence            45544 456799999986554333321 22467899999988887777653  789999988765433333322234567


Q ss_pred             EEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCc
Q 036585          108 LSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGR  186 (304)
Q Consensus       108 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  186 (304)
                      +++.+.+. ++++-...+.|.+.++..........                             ........++++|...
T Consensus        85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-----------------------------~~l~~P~~iavdp~~G  135 (628)
T 4a0p_A           85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-----------------------------KDLDSPRALALDPAEG  135 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC-----------------------------SSCCCEEEEEEETTTT
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe-----------------------------CCCCCcccEEEccCCC
Confidence            88876544 44444556788888876432211110                             1223457899998655


Q ss_pred             EEEEee--CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecCCCceeeeeeccCCCC
Q 036585          187 LMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVRSGKEVASWMSFDTEP  263 (304)
Q Consensus       187 ~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~i  263 (304)
                      .|+.+.  ..+.|...++..... ..+.   ..-.....++++++++.|+.+. ..+.|..+|+..... ..+.......
T Consensus       136 ~lY~tD~g~~~~I~r~~~dG~~~-~~l~---~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P  210 (628)
T 4a0p_A          136 FMYWTEWGGKPKIDRAAMDGSER-TTLV---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHP  210 (628)
T ss_dssp             EEEEEECSSSCEEEEEETTSCSC-EEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCE
T ss_pred             eEEEeCCCCCCEEEEEeCCCCce-EEEE---CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCc
Confidence            566554  257888888764443 3333   2345678899999877776664 567899999865433 3333333445


Q ss_pred             ceEEeCC
Q 036585          264 PVIKWAP  270 (304)
Q Consensus       264 ~~~~~~~  270 (304)
                      ..+++..
T Consensus       211 ~glav~~  217 (628)
T 4a0p_A          211 FGLTQYQ  217 (628)
T ss_dssp             EEEEEET
T ss_pred             eEEEEEC
Confidence            6777755

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.28  E-value=0.00035  Score=55.33  Aligned_cols=196  Identities=12%  Similarity=0.201  Sum_probs=110.3

Q ss_pred             ceeeEeecccCcEEEEee------------CCCeEEEEecCCcc-eeeeec--c-----cccceeEEEEcc--CCC-eEE
Q 036585           17 SEEILQSMEVGIYLVTAS------------DDESIRLYDVTAAT-CLKTIN--S-----KKYGVDLVCFTS--HPT-TVI   73 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~------------~d~~i~vw~~~~~~-~~~~~~--~-----~~~~v~~~~~~~--~~~-~l~   73 (304)
                      ..+-+...++|..+++++            .+|.|.++|.++.. ....+.  +     .......+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            344455677776655552            68999999987321 112222  2     223566777766  344 455


Q ss_pred             EEecCCCCCceEEEEccCce----eeeecccc-cccEEEEEEcCCCCEEEEccc-----------------CCeEEEEeC
Q 036585           74 YSSKNGWDESLRLLSLHDNK----YSRYFKGH-HDRVVLLSLCSSKDCFISGSL-----------------DRTVLLWDQ  131 (304)
Q Consensus        74 ~~~~~~~d~~i~vwd~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~  131 (304)
                      ++.....+.+|.+|++....    .+..+.+. -.....+.+.++|.+.++...                 .|.+..+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            55432225688888776532    22233321 235678888888876665431                 133333332


Q ss_pred             CcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee-CCCeEEEEEcCC-CceeE
Q 036585          132 RAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFR-GTLLS  209 (304)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-~~~~~  209 (304)
                      .  +.. .+                             ...-...+.++|+||++.|+++. ..+.|+.|++.. ++...
T Consensus       211 ~--~~~-~~-----------------------------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~  258 (355)
T 3sre_A          211 N--DVR-VV-----------------------------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP  258 (355)
T ss_dssp             T--CCE-EE-----------------------------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             C--eEE-Ee-----------------------------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec
Confidence            1  111 00                             01123467899999998887765 578999999863 33322


Q ss_pred             --EEEeCCCCCCcceEEEEcC-CCcEEEEecCC-CcEEEEecC
Q 036585          210 --TYNVKPVSRNSTLEASFSP-EGMFVISGSGD-GSVHAWSVR  248 (304)
Q Consensus       210 --~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d-g~i~v~d~~  248 (304)
                        .+.    .....-.+++++ +|++.+++..+ +.|..|+..
T Consensus       259 ~~~~~----~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          259 LRVLS----FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEE----CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             CEEEe----CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence              232    245667789999 59877766534 344444543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.25  E-value=0.001  Score=53.41  Aligned_cols=226  Identities=15%  Similarity=0.198  Sum_probs=142.2

Q ss_pred             cceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC-cee
Q 036585           16 LSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKY   94 (304)
Q Consensus        16 ~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~-~~~   94 (304)
                      ...+..-..|..+.||.-. ..++.|+|+++.+.+....... +|.-=.|-. .+.|+..+    +..|+-|++.. ..+
T Consensus        66 i~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis-~~~l~lVT----~taVyHWsi~~~s~P  138 (494)
T 1bpo_A           66 ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS-LNTVALVT----DNAVYHWSMEGESQP  138 (494)
T ss_dssp             CCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEE-TTEEEEEC----SSEEEEEESSSSCCC
T ss_pred             cccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecC-CCeEEEEc----CCeeEEecccCCCCc
Confidence            3334444566777888776 5789999999988887776554 566666764 44566665    77999999975 345


Q ss_pred             eeeccccc----ccEEEEEEcCCCCEEEEcc-------cCCeEEEEeCCcceeeceEEEeccceeEecCC-----CeEEE
Q 036585           95 SRYFKGHH----DRVVLLSLCSSKDCFISGS-------LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ-----GLVFG  158 (304)
Q Consensus        95 ~~~~~~~~----~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  158 (304)
                      ++.+..|.    ..|.....+++.++++..+       -.|.+.+|..+.+.... +..+......+..+     ..++.
T Consensus       139 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~-ieGhaa~F~~~~~~g~~~~~~lf~  217 (494)
T 1bpo_A          139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAASFAQFKMEGNAEESTLFC  217 (494)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE-ECCSEEEEEEEECTTCSSEEEEEE
T ss_pred             hhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch-heeeeeeeEEEecCCCCCCceEEE
Confidence            56665443    4788888889999876543       34788899887654321 11111111111101     01111


Q ss_pred             ec-----CCCeEEEEecCC---------------------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585          159 YE-----KGPLDIFSVGGD---------------------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN  212 (304)
Q Consensus       159 ~~-----~~~~~~~~~~~~---------------------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  212 (304)
                      +.     .+.+.+.++...                     .+-..++..++.-..++.-+.-|.|++||+.++.++..-+
T Consensus       218 fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr  297 (494)
T 1bpo_A          218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (494)
T ss_dssp             EEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence            11     134444444321                     1223456677777788888999999999999999998877


Q ss_pred             eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585          213 VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       213 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  252 (304)
                         .....|...+.+....-++.....|.|.--.+.....
T Consensus       298 ---Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          298 ---ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             ---CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             ---ccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence               4556666666655555566666788777666655443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=98.24  E-value=0.00022  Score=57.10  Aligned_cols=158  Identities=15%  Similarity=0.192  Sum_probs=102.7

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeeccc----ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSK----KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      .......+|..++.+- ++.||.-++......+.+...    -..+..+..+|+|++|+..+    +..|.|..+..+..
T Consensus        24 R~~~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g----~~~V~Vv~LP~~~~   98 (452)
T 3pbp_A           24 RYIFSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN----DNEIFVMEVPWGYS   98 (452)
T ss_dssp             EEEEEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC----SSEEEEEECCTTCS
T ss_pred             cEEEEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec----CCeEEEEEecCccc
Confidence            3344445566666654 467888787754444444433    23688899999999999998    78999998873310


Q ss_pred             ------------eeeccc------ccccEEEEEEcC---CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCC
Q 036585           95 ------------SRYFKG------HHDRVVLLSLCS---SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ  153 (304)
Q Consensus        95 ------------~~~~~~------~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  153 (304)
                                  .+.+.-      ...+|..+.|||   .+..|++-..|+.|++||+........ ......       
T Consensus        99 ~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~-------  170 (452)
T 3pbp_A           99 NVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPN-------  170 (452)
T ss_dssp             CCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCC-------
T ss_pred             cCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccc-------
Confidence                        112221      246799999999   456899999999999999986332222 111000       


Q ss_pred             CeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee--CCCeEEEE
Q 036585          154 GLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT--MEGHIHVL  200 (304)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~  200 (304)
                                 ..+........+.+++|.+++-.|.+.+  ..|.|+-.
T Consensus       171 -----------~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          171 -----------NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             -----------SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             -----------cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence                       0112223446788999999887777755  78887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.23  E-value=0.0011  Score=52.79  Aligned_cols=219  Identities=12%  Similarity=0.109  Sum_probs=119.5

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcc-eeeeec---ccccceeEEEEccC---CCeEEEEecC-CCC----Cce
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAAT-CLKTIN---SKKYGVDLVCFTSH---PTTVIYSSKN-GWD----ESL   84 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~~-~~d----~~i   84 (304)
                      .+..+.+.++|+++++ ..+|.|++++ .+++ .+..+.   ........|+++|+   +..|+++... ..+    ..|
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            4566888999985554 5669999997 3444 222221   12346889999998   5555554420 002    577


Q ss_pred             EEEEccCc-------eee-eeccc-ccccEEEEEEcCCCCEEEEccc-------------CCeEEEEeCCcce-------
Q 036585           85 RLLSLHDN-------KYS-RYFKG-HHDRVVLLSLCSSKDCFISGSL-------------DRTVLLWDQRAEK-------  135 (304)
Q Consensus        85 ~vwd~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~-------  135 (304)
                      ..|+....       +.+ ..+.. .......+.|.|+|.++++.+.             .|.|.-++....-       
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~  187 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP  187 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence            77776643       111 11211 1112357899999987776432             2556666654320       


Q ss_pred             eeceEE--EeccceeEecC-CCeEEEecCCC-----eEEEEec-------------------------CCCCCceEEEEe
Q 036585          136 CQGLLR--VQGRPAAAYDD-QGLVFGYEKGP-----LDIFSVG-------------------------GDISDANVVKFS  182 (304)
Q Consensus       136 ~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~-------------------------~~~~~v~~~~~~  182 (304)
                      ....+.  .....-+++++ ++.++..+.+.     +.+....                         ........++|.
T Consensus       188 ~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y  267 (354)
T 3a9g_A          188 NSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFV  267 (354)
T ss_dssp             TCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEEC
T ss_pred             CCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEE
Confidence            011221  12334577777 66666544432     2211110                         111234556662


Q ss_pred             -------cCCcEEEEeeCCCeEEEEEcCCC-ceeEEEEeCCCCCCcceEEEEcCCCcEEEEec
Q 036585          183 -------NDGRLMLLTTMEGHIHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       183 -------~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                             .+|.++++.-..+.|...++... +..............+..+++.|||.+.++..
T Consensus       268 ~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          268 HGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence                   46776666666778888888753 33221222212245788899999997666553

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.22  E-value=0.0019  Score=55.57  Aligned_cols=201  Identities=8%  Similarity=0.025  Sum_probs=111.4

Q ss_pred             eeEeecccCcEEEEe-eCCCeEEEEecCCcce-eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           19 EILQSMEVGIYLVTA-SDDESIRLYDVTAATC-LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~-~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ..+.+.+.++.|+.+ ...+.|..++++.... ...+...-.....+++.+.+..|+.+...  .+.|.+.++.......
T Consensus        43 ~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~--~~~I~v~~~dG~~~~~  120 (619)
T 3s94_A           43 AAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE--TNRIEVSNLDGSLRKV  120 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEE
T ss_pred             EEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCC--CCEEEEEECCCCCEEE
Confidence            345666655555544 4467788888765432 22233333467889999977777776653  7899999987643322


Q ss_pred             ecccccccEEEEEEcCCCCEEEEccc--CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS  174 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (304)
                      .+...-.....+++.|.+..|+.+..  .+.|...++...... .+.                            .....
T Consensus       121 l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~-~l~----------------------------~~~~~  171 (619)
T 3s94_A          121 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-III----------------------------NSEIY  171 (619)
T ss_dssp             EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEE----------------------------CSSCS
T ss_pred             EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE-EEE----------------------------eCCCC
Confidence            22233345678889886555554442  345555555422111 111                            01223


Q ss_pred             CceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCcee
Q 036585          175 DANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV  253 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~  253 (304)
                      ..+.++++++++.|+.+ ...+.|..+|+..........   ........+++..+ ..+++-...+.|...|..+++..
T Consensus       172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~---~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK---GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred             CCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe---CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence            45789999876656555 456789999986543322222   11222345777655 34444446678999998777543


Q ss_pred             e
Q 036585          254 A  254 (304)
Q Consensus       254 ~  254 (304)
                      .
T Consensus       248 ~  248 (619)
T 3s94_A          248 R  248 (619)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.21  E-value=0.0022  Score=55.23  Aligned_cols=200  Identities=8%  Similarity=-0.037  Sum_probs=120.0

Q ss_pred             eeeEeecccCcE-EEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           18 EEILQSMEVGIY-LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        18 ~~~i~~~~~~~~-l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ...+.+.+.+.. +.+-..++.|..+++........+.........+++.+.+..|+.+...  .+.|.+.++.......
T Consensus        39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~--~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           39 ASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTG--TNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSTTCEE
T ss_pred             eEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECC--CCEEEEEecCCCcEEE
Confidence            345666665444 4455567888888877544333333333457789998877777766543  7889999987543322


Q ss_pred             ecccccccEEEEEEcCCCCEEEEccc--CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS  174 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (304)
                      .+...-.....+++.|....|+....  .+.|...++.........                              ....
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~------------------------------~~~~  166 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV------------------------------PNVG  166 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE------------------------------CSCS
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE------------------------------CCCC
Confidence            22233345689999986555555442  456666666543221111                              1123


Q ss_pred             CceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCcee
Q 036585          175 DANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV  253 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~  253 (304)
                      ....++++++++.|+.+ ...+.|..+|+..... ..+..   .......+++.. +..+++-...+.|...|..+++..
T Consensus       167 ~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~---~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~  241 (628)
T 4a0p_A          167 RANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIAD---DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR  241 (628)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE---CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeec---cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence            56789999976666655 4567899999865443 33332   223445677754 344444445778888887666543


Q ss_pred             e
Q 036585          254 A  254 (304)
Q Consensus       254 ~  254 (304)
                      .
T Consensus       242 ~  242 (628)
T 4a0p_A          242 T  242 (628)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.19  E-value=0.00089  Score=51.99  Aligned_cols=227  Identities=12%  Similarity=0.161  Sum_probs=110.1

Q ss_pred             CcEEEEeeCC----CeEEEEecCCcceeee--ecccccceeEEEEccCCCeEEEEecCC--CCCceEEEEccCceeeee-
Q 036585           27 GIYLVTASDD----ESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDNKYSRY-   97 (304)
Q Consensus        27 ~~~l~~~~~d----~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd~~~~~~~~~-   97 (304)
                      +.+++.|+.+    ..+..||+.+.+-...  +...... .+++ ..++..++.|+..+  .-..+.+||..+.+-... 
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            4566666643    3578889876643221  1111111 1222 22666667766421  124688899887653222 


Q ss_pred             -cccccccEEEEEEcCCCCEEEEcccCC-----eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585           98 -FKGHHDRVVLLSLCSSKDCFISGSLDR-----TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG  171 (304)
Q Consensus        98 -~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (304)
                       +........++.+  ++..++.|+.++     .+.+||+.+.+-...-..+                           .
T Consensus        94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p---------------------------~  144 (302)
T 2xn4_A           94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN---------------------------T  144 (302)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS---------------------------S
T ss_pred             CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC---------------------------C
Confidence             2111111122222  566777776543     4677787765533221100                           0


Q ss_pred             CCCCceEEEEecCCcEEEEeeCC-------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-----
Q 036585          172 DISDANVVKFSNDGRLMLLTTME-------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----  239 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----  239 (304)
                      .... .+++. -+++.++.|+.+       ..+.+||+.+.+....-.. +........+.  .++++++.|+.+     
T Consensus       145 ~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~--~~~~iyv~GG~~~~~~~  219 (302)
T 2xn4_A          145 RRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM-STRRSGAGVGV--LNNLLYAVGGHDGPLVR  219 (302)
T ss_dssp             CCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCC-SSCCBSCEEEE--ETTEEEEECCBSSSSBC
T ss_pred             cccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC-ccccccccEEE--ECCEEEEECCCCCCccc
Confidence            0011 11222 256666666542       4588999987765443221 11122222222  267777777654     


Q ss_pred             CcEEEEecCCCce--eeeeeccCCCCceEEeCCCCcEEEEecCc-------eEEeccCCcc
Q 036585          240 GSVHAWSVRSGKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE-------LSFWIPDLSK  291 (304)
Q Consensus       240 g~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-------~~iw~~~~~~  291 (304)
                      ..+.+||+.+.+-  +..+..... -.+++. -++++++.|+.+       +.+|+++.++
T Consensus       220 ~~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          220 KSVEVYDPTTNAWRQVADMNMCRR-NAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCB-SCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ceEEEEeCCCCCEeeCCCCCCccc-cCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            3689999876542  221211111 112222 266777777643       5666665544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.19  E-value=0.0014  Score=52.19  Aligned_cols=225  Identities=12%  Similarity=0.096  Sum_probs=119.1

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCccee---eee----cccccceeEEEEccC---CCeEEEEecC-CC----C
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATCL---KTI----NSKKYGVDLVCFTSH---PTTVIYSSKN-GW----D   81 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~---~~~----~~~~~~v~~~~~~~~---~~~l~~~~~~-~~----d   81 (304)
                      ++..+.+.++|++|+.+...|.|++++.. ++..   ..+    .........++++|+   +..|++.... +.    .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            56678999999834455567999999853 3321   111    112346789999996   5555554320 00    1


Q ss_pred             CceEEEEccCc-------eee-eeccc---ccccEEEEEEcCCCCEEEEccc-------------CCeEEEEeCCcce--
Q 036585           82 ESLRLLSLHDN-------KYS-RYFKG---HHDRVVLLSLCSSKDCFISGSL-------------DRTVLLWDQRAEK--  135 (304)
Q Consensus        82 ~~i~vwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~--  135 (304)
                      ..|..+++..+       +.+ ..+..   .......+.|.|+|.++++.+.             .|.|.-++....-  
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            24666665432       111 11110   1112357999999965555432             2467777765320  


Q ss_pred             ----------eeceEEE--eccceeEecC-CCeEEEecCCC---eEEEEec-----------------------------
Q 036585          136 ----------CQGLLRV--QGRPAAAYDD-QGLVFGYEKGP---LDIFSVG-----------------------------  170 (304)
Q Consensus       136 ----------~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~-----------------------------  170 (304)
                                ....+..  ....-+++++ ++.++..+.+.   -.+..+.                             
T Consensus       178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~  257 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIV  257 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSC
T ss_pred             CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCC
Confidence                      1122221  2233466777 56665444331   1111110                             


Q ss_pred             ----------CCCCCceEEEEec-------CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEE
Q 036585          171 ----------GDISDANVVKFSN-------DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  233 (304)
Q Consensus       171 ----------~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  233 (304)
                                .+......+.|.+       +|.++++.-..+.|...++..++..............+..+++.|||.++
T Consensus       258 ~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ly  337 (353)
T 2g8s_A          258 AGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLY  337 (353)
T ss_dssp             TTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEE
T ss_pred             CCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEE
Confidence                      0111344566643       46666666677888888887665443333221223578889999999866


Q ss_pred             EEec-CCCcE
Q 036585          234 ISGS-GDGSV  242 (304)
Q Consensus       234 ~~~~-~dg~i  242 (304)
                      ++.. .+|.|
T Consensus       338 v~td~~~g~I  347 (353)
T 2g8s_A          338 VLTDESSGEL  347 (353)
T ss_dssp             EEECSTTEEE
T ss_pred             EEEeCCCCEE
Confidence            6543 34433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.18  E-value=0.0019  Score=53.49  Aligned_cols=155  Identities=12%  Similarity=0.206  Sum_probs=95.4

Q ss_pred             eeEEEEcc-CCCeEEEEecCCCCCceEEEEccCceeeeeccc---ccccEEEEEE-------cCCCCEEEEcccCC----
Q 036585           60 VDLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG---HHDRVVLLSL-------CSSKDCFISGSLDR----  124 (304)
Q Consensus        60 v~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~~~~~dg----  124 (304)
                      ...|+|.| +...|+++...  .+.|++.|+.++........   .......++|       +++++.|+.+...+    
T Consensus       141 p~~la~dp~~~~~Lyv~~~~--~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDG--HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEET--EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECC--CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            45889998 45666666542  46799999888765543332   1235889999       99998666665443    


Q ss_pred             ---eEEEEeCCc-ceee-----ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecC-CcEEEEeeCC
Q 036585          125 ---TVLLWDQRA-EKCQ-----GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSND-GRLMLLTTME  194 (304)
Q Consensus       125 ---~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d  194 (304)
                         .|.+++... +...     ..+.                          .    ......++++|+ +.++++-..+
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~--------------------------~----~~~p~giavdp~~g~LYvtd~~~  268 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIA--------------------------A----YKQCNGATIHPINGELYFNSYEK  268 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEE--------------------------E----ESCCCCEEECTTTCCEEEEETTT
T ss_pred             cCceEEEEecCCCCceeecccceeec--------------------------c----CCCceEEEEcCCCCeEEEEECCC
Confidence               255555322 1111     0110                          0    013456888995 4545556678


Q ss_pred             CeEEEEEcC-------CCce-----------eEE-EEeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecC
Q 036585          195 GHIHVLDSF-------RGTL-----------LST-YNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVR  248 (304)
Q Consensus       195 g~i~~~d~~-------~~~~-----------~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~  248 (304)
                      +.|..+|+.       ++..           ... +..  ........++|+|+|++|+.+ ...+.|+.++..
T Consensus       269 g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~--~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          269 GQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI--ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC--SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CEEEEEecccccccccCceeecccccccccccceeEec--CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            889999987       5553           122 222  233456789999999965555 456788886653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.18  E-value=0.00088  Score=52.11  Aligned_cols=226  Identities=10%  Similarity=0.053  Sum_probs=111.5

Q ss_pred             CcEEEEeeC--CCeEEEEecCCcceee--eecccccceeEEEEccCCCeEEEEecC-CCCCceEEEEccCceeeee--cc
Q 036585           27 GIYLVTASD--DESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKN-GWDESLRLLSLHDNKYSRY--FK   99 (304)
Q Consensus        27 ~~~l~~~~~--d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~d~~i~vwd~~~~~~~~~--~~   99 (304)
                      +.+++.|+.  ...+.+||..+++-..  .+......-..+.  .++..++.|+.. ..-..+.+||+.+++-...  +.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            345556654  3468899988754322  2221111222222  366666776641 1136788899887753222  22


Q ss_pred             cccccEEEEEEcCCCCEEEEcccC------CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLD------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI  173 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                      ........+.+  ++..++.|+.+      ..+.+||+.+.+-...-..+.                           ..
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~---------------------------~r  140 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT---------------------------QR  140 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS---------------------------CC
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC---------------------------Cc
Confidence            11111122222  56677777654      358888887765432211000                           00


Q ss_pred             CCceEEEEecCCcEEEEeeC---------CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-----
Q 036585          174 SDANVVKFSNDGRLMLLTTM---------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----  239 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~---------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----  239 (304)
                      .. .+++ .-+++.++.|+.         -..+.+||+.+.+....-.. +.....-..+.+  ++++++.|+.+     
T Consensus       141 ~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~  215 (306)
T 3ii7_A          141 CS-HGMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM-IEARKNHGLVFV--KDKIFAVGGQNGLGGL  215 (306)
T ss_dssp             BS-CEEE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC-SSCCBSCEEEEE--TTEEEEECCEETTEEB
T ss_pred             ce-eEEE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc-cchhhcceEEEE--CCEEEEEeCCCCCCCC
Confidence            11 1111 225666666653         34588999988754433221 111122222222  67777777643     


Q ss_pred             CcEEEEecCCCce--eeeeeccCCCCceEEeCCCCcEEEEecCc-------eEEeccCCc
Q 036585          240 GSVHAWSVRSGKE--VASWMSFDTEPPVIKWAPGSLMFVTGSSE-------LSFWIPDLS  290 (304)
Q Consensus       240 g~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-------~~iw~~~~~  290 (304)
                      ..+.+||+.+.+-  +..+.........+.+  ++++++.|+.+       +.+|+++.+
T Consensus       216 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          216 DNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             CCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             ceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            4689999877542  2222211122223333  66777777642       556666554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.18  E-value=0.00076  Score=53.38  Aligned_cols=195  Identities=12%  Similarity=0.090  Sum_probs=109.0

Q ss_pred             ceeEEEEccCCCeEEEEec-----C----CCCCceEEEEccCce-eeeec--cc-----ccccEEEEEEcC--CCC-EEE
Q 036585           59 GVDLVCFTSHPTTVIYSSK-----N----GWDESLRLLSLHDNK-YSRYF--KG-----HHDRVVLLSLCS--SKD-CFI  118 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~-----~----~~d~~i~vwd~~~~~-~~~~~--~~-----~~~~v~~~~~~~--~~~-~l~  118 (304)
                      ....+...|+|..+++++.     .    ..+|.|.++|..+.. ....+  .+     ..-....+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            4566777777654444310     0    018999999987421 11122  11     223566777765  343 343


Q ss_pred             Ecc-c--CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC-CCCCceEEEEecCCcEEEEee--
Q 036585          119 SGS-L--DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG-DISDANVVKFSNDGRLMLLTT--  192 (304)
Q Consensus       119 ~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--  192 (304)
                      .+. .  +..|.+|++........+.                         -.+.+ .-...+.+.+.++|.+.++..  
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~-------------------------~~~~g~~~~~pND~~v~~~G~fyvt~~~~  185 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHL-------------------------KTIRHKLLPSVNDIVAVGPEHFYATNDHY  185 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEE-------------------------EEECCTTCSSEEEEEEEETTEEEEEESCS
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEE-------------------------eccccCCCCCCceEEEeCCCCEEecCCcE
Confidence            332 2  4567776665432111110                         00111 124568899999998766643  


Q ss_pred             ---------------CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcEEEEecCC-Cce--e
Q 036585          193 ---------------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSVHAWSVRS-GKE--V  253 (304)
Q Consensus       193 ---------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~~~-~~~--~  253 (304)
                                     ..|.|+.+|.  ++......    .-...+.++||||++.|+.+. ..+.|+.|++.. ++.  .
T Consensus       186 ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~----~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~  259 (355)
T 3sre_A          186 FIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAE----GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL  259 (355)
T ss_dssp             CSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred             eCCcccccchhhccCCccEEEEEEC--CeEEEeec----CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecC
Confidence                           1355666665  33222222    234567899999998877764 567899999863 332  2


Q ss_pred             eeeeccCCCCceEEeCC-CCcEEEEecCc-eEEe
Q 036585          254 ASWMSFDTEPPVIKWAP-GSLMFVTGSSE-LSFW  285 (304)
Q Consensus       254 ~~~~~~~~~i~~~~~~~-~~~~l~s~~~d-~~iw  285 (304)
                      +.+ ...+..-.+++.+ +|++.+++..+ .+|+
T Consensus       260 ~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~  292 (355)
T 3sre_A          260 RVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIF  292 (355)
T ss_dssp             EEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHH
T ss_pred             EEE-eCCCCCceEEEeCCCCcEEEEecCCceEEE
Confidence            233 2345567899999 59888876655 4444

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.11  E-value=0.0012  Score=51.53  Aligned_cols=228  Identities=11%  Similarity=0.113  Sum_probs=111.2

Q ss_pred             cCcEEEEeeCC----CeEEEEecCCcceeee--ecccccceeEEEEccCCCeEEEEec----C--CCCCceEEEEccCce
Q 036585           26 VGIYLVTASDD----ESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSK----N--GWDESLRLLSLHDNK   93 (304)
Q Consensus        26 ~~~~l~~~~~d----~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~----~--~~d~~i~vwd~~~~~   93 (304)
                      ++.+++.|+.+    ..+.+||..+.+-...  +...... .+++ ..++..++.|+.    .  .....+.+||+.+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            45677777742    3588899876543221  1111111 1222 225666666653    1  012468889988765


Q ss_pred             eeee--cccccccEEEEEEcCCCCEEEEcccC-----CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEE
Q 036585           94 YSRY--FKGHHDRVVLLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDI  166 (304)
Q Consensus        94 ~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (304)
                      -...  +.........+.+  +++.++.|+.+     ..+.+||+.+.+-...-..+                       
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-----------------------  156 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML-----------------------  156 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS-----------------------
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC-----------------------
Confidence            3222  2111111122222  56667776643     35777887765433221100                       


Q ss_pred             EEecCCCCCceEEEEecCCcEEEEeeCC-----CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC--
Q 036585          167 FSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD--  239 (304)
Q Consensus       167 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--  239 (304)
                          .....-..+.+  +++.++.|+.+     ..+.+||+.+.+....-.. +........+.+  ++++++.|+.+  
T Consensus       157 ----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~  227 (308)
T 1zgk_A          157 ----TRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM-NTIRSGAGVCVL--HNCIYAAGGYDGQ  227 (308)
T ss_dssp             ----SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred             ----ccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC-CCccccceEEEE--CCEEEEEeCCCCC
Confidence                00011112222  66777777654     4689999887654432211 111222222333  67777777654  


Q ss_pred             ---CcEEEEecCCCcee--eeeeccCCCCceEEeCCCCcEEEEecCc-------eEEeccCCcc
Q 036585          240 ---GSVHAWSVRSGKEV--ASWMSFDTEPPVIKWAPGSLMFVTGSSE-------LSFWIPDLSK  291 (304)
Q Consensus       240 ---g~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~d-------~~iw~~~~~~  291 (304)
                         ..+.+||+.+.+-.  ..+...... .+++. -++++++.|+.+       +.+|+++.++
T Consensus       228 ~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          228 DQLNSVERYDVETETWTFVAPMKHRRSA-LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             SBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CccceEEEEeCCCCcEEECCCCCCCccc-eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence               46999998775422  112111111 12222 266777777643       5566665543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.10  E-value=0.0018  Score=50.28  Aligned_cols=207  Identities=9%  Similarity=0.040  Sum_probs=121.5

Q ss_pred             eeeEeeccc-CcEEEEeeCCCeEEEEecCCcceeee-ecc----c--ccceeEEEE---ccCCCeEEEEecC--------
Q 036585           18 EEILQSMEV-GIYLVTASDDESIRLYDVTAATCLKT-INS----K--KYGVDLVCF---TSHPTTVIYSSKN--------   78 (304)
Q Consensus        18 ~~~i~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~l~~~~~~--------   78 (304)
                      ++.+.|.+. +.++++.-..++|..|+...+..... +.+    .  ...+..+.|   .|++..+++....        
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            455677665 44444444799999999875543322 222    1  124578999   6886666643310        


Q ss_pred             --CCCCceEEEEcc---Cceeeeecc--ccc-----------ccEEEEEEcCCCCEEEEcccC-CeEEEEeCCcceeece
Q 036585           79 --GWDESLRLLSLH---DNKYSRYFK--GHH-----------DRVVLLSLCSSKDCFISGSLD-RTVLLWDQRAEKCQGL  139 (304)
Q Consensus        79 --~~d~~i~vwd~~---~~~~~~~~~--~~~-----------~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~  139 (304)
                        ..+..|..||+.   +++.+....  ...           .....++..++|+..++++.. +.|...+..... ...
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~~~  173 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-VST  173 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-EEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-Eee
Confidence              015779999998   776654332  111           247889999999999988877 777777665432 221


Q ss_pred             EEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC--C--
Q 036585          140 LRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK--P--  215 (304)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~--  215 (304)
                      +......                       .......+.|+++|+|+.|++....|.+..+|+.+.... .+...  .  
T Consensus       174 ~~~~~~~-----------------------~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~  229 (334)
T 2p9w_A          174 FAWESGN-----------------------GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDF  229 (334)
T ss_dssp             EEECCCC-----------------------SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCC
T ss_pred             eeecCCC-----------------------cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCc
Confidence            1111100                       012234678999999998888877999999998843220 12210  0  


Q ss_pred             CCCCcceEE-EEcCCCcE-EEEecCCCcEEEEecCC
Q 036585          216 VSRNSTLEA-SFSPEGMF-VISGSGDGSVHAWSVRS  249 (304)
Q Consensus       216 ~~~~~i~~~-~~s~~~~~-l~~~~~dg~i~v~d~~~  249 (304)
                      ..-.....+ .--.+|+. |++....+.+.+.+...
T Consensus       230 ~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          230 GTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             CCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             ccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            011122332 33347777 44444566666666544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.93  E-value=0.0017  Score=50.36  Aligned_cols=191  Identities=12%  Similarity=0.114  Sum_probs=98.2

Q ss_pred             ccCcEEEEeeCC-----CeEEEEecCCcc---e--eeeecccccceeEEEEccCCCeEEEEecCC--CCCceEEEEccCc
Q 036585           25 EVGIYLVTASDD-----ESIRLYDVTAAT---C--LKTINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDN   92 (304)
Q Consensus        25 ~~~~~l~~~~~d-----~~i~vw~~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd~~~~   92 (304)
                      .++++++.|+.+     ..+.+||..+.+   -  +..+.........+.+  +++.++.|+..+  ....+.+||+.+.
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence            356777777755     358899987765   2  2222221111222222  666667766421  1236888898876


Q ss_pred             eeee--ecccccccEEEEEEcCCCCEEEEcccC-----CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           93 KYSR--YFKGHHDRVVLLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        93 ~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                      +-..  .+........++.+  +++.++.|+.+     ..+.+||+.+.+-...-..+                      
T Consensus       139 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p----------------------  194 (301)
T 2vpj_A          139 QWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA----------------------  194 (301)
T ss_dssp             EEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS----------------------
T ss_pred             eEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC----------------------
Confidence            5322  12111111122222  56677777654     35778888766443221100                      


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEeeCC-----CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-  239 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-  239 (304)
                           ........+.  -+++.++.|+.+     ..+.+||+.+.+....-.. +........+.  .+++.++.|+.+ 
T Consensus       195 -----~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~--~~~~i~v~GG~~~  264 (301)
T 2vpj_A          195 -----TKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM-TTPRCYVGATV--LRGRLYAIAGYDG  264 (301)
T ss_dssp             -----SCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEE--ETTEEEEECCBCS
T ss_pred             -----cccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC-CCcccceeEEE--ECCEEEEEcCcCC
Confidence                 0001111122  256777777654     4689999988765433221 11122222222  267777777755 


Q ss_pred             ----CcEEEEecCCCc
Q 036585          240 ----GSVHAWSVRSGK  251 (304)
Q Consensus       240 ----g~i~v~d~~~~~  251 (304)
                          ..+.+||+++.+
T Consensus       265 ~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          265 NSLLSSIECYDPIIDS  280 (301)
T ss_dssp             SSBEEEEEEEETTTTE
T ss_pred             CcccccEEEEcCCCCe
Confidence                357888887653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.86  E-value=0.002  Score=49.94  Aligned_cols=190  Identities=13%  Similarity=0.181  Sum_probs=96.0

Q ss_pred             cCcEEEEeeCCC-----eEEEEecCCcceee--eecccccceeEEEEccCCCeEEEEecCCC--CCceEEEEccCceeee
Q 036585           26 VGIYLVTASDDE-----SIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNGW--DESLRLLSLHDNKYSR   96 (304)
Q Consensus        26 ~~~~l~~~~~d~-----~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--d~~i~vwd~~~~~~~~   96 (304)
                      ++.+++.|+.++     .+.+||..+.+-..  .+......-..+.  .+++.++.|+..+.  -..+.+||+.+.+-..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            567777777543     57888887654222  2221111112222  26677777765210  1357788887765322


Q ss_pred             e--cccccccEEEEEEcCCCCEEEEcccC-------CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585           97 Y--FKGHHDRVVLLSLCSSKDCFISGSLD-------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF  167 (304)
Q Consensus        97 ~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (304)
                      .  +........++.+  +++.++.|+.+       ..+.+||+.+.+-...-..+                        
T Consensus       139 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p------------------------  192 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS------------------------  192 (302)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS------------------------
T ss_pred             cCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc------------------------
Confidence            2  2111111122222  56666666542       34778888766543221100                        


Q ss_pred             EecCCCCCceEEEEecCCcEEEEeeCC-----CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC--
Q 036585          168 SVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG--  240 (304)
Q Consensus       168 ~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--  240 (304)
                         ........+.  -++++++.|+.+     ..+.+||+.+.+....-.. +........+.  .+++.++.|+.++  
T Consensus       193 ---~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~--~~~~i~v~GG~~~~~  264 (302)
T 2xn4_A          193 ---TRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM-NMCRRNAGVCA--VNGLLYVVGGDDGSC  264 (302)
T ss_dssp             ---SCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEE--ETTEEEEECCBCSSS
T ss_pred             ---cccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC-CCccccCeEEE--ECCEEEEECCcCCCc
Confidence               0001111122  266777777654     3689999987765433221 11111122222  3677777777553  


Q ss_pred             ---cEEEEecCCCc
Q 036585          241 ---SVHAWSVRSGK  251 (304)
Q Consensus       241 ---~i~v~d~~~~~  251 (304)
                         .+.+||+.+.+
T Consensus       265 ~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          265 NLASVEYYNPTTDK  278 (302)
T ss_dssp             BCCCEEEEETTTTE
T ss_pred             ccccEEEEcCCCCe
Confidence               48999987654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.83  E-value=0.0032  Score=50.59  Aligned_cols=161  Identities=12%  Similarity=0.124  Sum_probs=99.8

Q ss_pred             EEccCCCeEEEEecCCCCCceEEEEccCceeeeecccc----cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeece
Q 036585           64 CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH----HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL  139 (304)
Q Consensus        64 ~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  139 (304)
                      ....++..++++-    ++.||.-++......+.++..    -..|..+..+|+|++|+..+. ..|.|-.+..+.....
T Consensus        27 ~~~~n~t~i~~a~----~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~  101 (452)
T 3pbp_A           27 FSSQNGTRIVFIQ----DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVE  101 (452)
T ss_dssp             EEETTTTEEEEEE----TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCC
T ss_pred             EEEcCCCEEEEEE----CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCc
Confidence            3445677777776    778888888754444444322    225778999999999988765 5788887763321110


Q ss_pred             EEEeccceeEecCCCeEEEecCCCeEEEEecC----CCCCceEEEEecC---CcEEEEeeCCCeEEEEEcCCCc--eeEE
Q 036585          140 LRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG----DISDANVVKFSND---GRLMLLTTMEGHIHVLDSFRGT--LLST  210 (304)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~~--~~~~  210 (304)
                      -  ...             ...-..+.|.+..    ...+|..+.|+|-   +..|++-..|+.|++||+....  +. .
T Consensus       102 ~--~~~-------------~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~  165 (452)
T 3pbp_A          102 D--VSI-------------QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-V  165 (452)
T ss_dssp             C--HHH-------------HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-E
T ss_pred             c--ccc-------------ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-c
Confidence            0  000             0000011222221    3578999999995   4579999999999999997522  11 2


Q ss_pred             EE------eCCCCCCcceEEEEcCCCcEEEE--ecCCCcEEEE
Q 036585          211 YN------VKPVSRNSTLEASFSPEGMFVIS--GSGDGSVHAW  245 (304)
Q Consensus       211 ~~------~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~v~  245 (304)
                      +.      ........+.+++|.+++-.|+.  .+..|.|+-.
T Consensus       166 L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          166 LNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             hhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            21      11123367889999998876666  4588887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.79  E-value=0.0083  Score=47.72  Aligned_cols=214  Identities=11%  Similarity=0.077  Sum_probs=115.3

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCceEEEEccCce-eeeec---ccccccEEEEEEcCC---CCEEEEccc----C---
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK-YSRYF---KGHHDRVVLLSLCSS---KDCFISGSL----D---  123 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~----d---  123 (304)
                      .....|+|.|+++ |+++..   ++.|++++ .+++ .+..+   .........++++|+   +..|+.+..    +   
T Consensus        29 ~~P~~ia~~pdG~-l~V~e~---~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVTER---PGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEETTE-EEEEET---TTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcCCCe-EEEEeC---CCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            3567899999997 444454   78999887 3444 22221   112346789999997   445554432    2   


Q ss_pred             -CeEEEEeCCcc--e---eeceEE-Ee-----ccceeEecCCCeEEEecCC-------------CeEEEEecCCC-----
Q 036585          124 -RTVLLWDQRAE--K---CQGLLR-VQ-----GRPAAAYDDQGLVFGYEKG-------------PLDIFSVGGDI-----  173 (304)
Q Consensus       124 -g~i~iwd~~~~--~---~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-----  173 (304)
                       ..|..|+....  .   ....+. ..     ....+.+.+++.++.....             .-+++.+....     
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~  183 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD  183 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence             56777776543  1   111111 11     2235778888866643210             12444443221     


Q ss_pred             -------------CCceEEEEec-CCcEEEEeeCCC---eEEEEEcCCCce----------------eEEEEeCCCCCCc
Q 036585          174 -------------SDANVVKFSN-DGRLMLLTTMEG---HIHVLDSFRGTL----------------LSTYNVKPVSRNS  220 (304)
Q Consensus       174 -------------~~v~~~~~~~-~~~~l~~~~~dg---~i~~~d~~~~~~----------------~~~~~~~~~~~~~  220 (304)
                                   .....++|+| +|.++++-....   .|.+..  .+..                ....... .....
T Consensus       184 npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~~a  260 (354)
T 3a9g_A          184 NPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG-SETWA  260 (354)
T ss_dssp             SSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCC
T ss_pred             CCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC-CCCcC
Confidence                         1245688888 565444322211   233322  1110                0001100 11234


Q ss_pred             ceEEEEc-------CCCcEEEEecCCCcEEEEecCCC-cee--eee-eccCCCCceEEeCCCCcEEEEec
Q 036585          221 TLEASFS-------PEGMFVISGSGDGSVHAWSVRSG-KEV--ASW-MSFDTEPPVIKWAPGSLMFVTGS  279 (304)
Q Consensus       221 i~~~~~s-------~~~~~l~~~~~dg~i~v~d~~~~-~~~--~~~-~~~~~~i~~~~~~~~~~~l~s~~  279 (304)
                      ...++|.       .+|+++++.-..+.|...++... +..  ..+ .+....+..+++.|||.+.++..
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            6677883       57777777777778888888753 322  222 22245789999999997666654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.79  E-value=0.0032  Score=48.89  Aligned_cols=190  Identities=6%  Similarity=0.070  Sum_probs=97.7

Q ss_pred             cCcEEEEeeCC----CeEEEEecCCcceee--eecccccceeEEEEccCCCeEEEEecC---CCCCceEEEEccCceeee
Q 036585           26 VGIYLVTASDD----ESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        26 ~~~~l~~~~~d----~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~---~~d~~i~vwd~~~~~~~~   96 (304)
                      ++.+++.|+.+    ..+.+||..+.+-..  .+.........+.  -+++.++.|+..   .....+.+||..+.+-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            56777787755    568889988764322  2221111112222  266677777651   012568889988775332


Q ss_pred             e--cccccccEEEEEEcCCCCEEEEccc---------CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           97 Y--FKGHHDRVVLLSLCSSKDCFISGSL---------DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        97 ~--~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                      .  +........++.+  +++.++.|+.         -..+.+||+.+.+-...-..+                      
T Consensus       133 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p----------------------  188 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI----------------------  188 (306)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS----------------------
T ss_pred             CCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc----------------------
Confidence            2  1111111122222  5666666653         244778888776433221100                      


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEeeCC-----CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-  239 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-  239 (304)
                           ..... ..+.. -++++++.|+.+     ..+.+||+.+.+....-.. +........+.+  ++++++.|+.+ 
T Consensus       189 -----~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~--~~~i~v~GG~~~  258 (306)
T 3ii7_A          189 -----EARKN-HGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM-PWKGVTVKCAAV--GSIVYVLAGFQG  258 (306)
T ss_dssp             -----SCCBS-CEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC-SCCBSCCEEEEE--TTEEEEEECBCS
T ss_pred             -----chhhc-ceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC-CCCccceeEEEE--CCEEEEEeCcCC
Confidence                 00011 11222 266677776643     3689999987764433211 112222233333  67778888744 


Q ss_pred             ----CcEEEEecCCCc
Q 036585          240 ----GSVHAWSVRSGK  251 (304)
Q Consensus       240 ----g~i~v~d~~~~~  251 (304)
                          ..+.+||+.+.+
T Consensus       259 ~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          259 VGRLGHILEYNTETDK  274 (306)
T ss_dssp             SSBCCEEEEEETTTTE
T ss_pred             CeeeeeEEEEcCCCCe
Confidence                468899987753

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.75  E-value=0.0092  Score=46.88  Aligned_cols=218  Identities=9%  Similarity=0.054  Sum_probs=113.2

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeec----ccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN----SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      .|.+...+..++ ++.+|.|. ...+.++.-..+.    .....+..+.|.+ + .+++++.   ++.|.. ....++.-
T Consensus        40 ~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~---~g~i~~-S~DgG~tW  111 (327)
T 2xbg_A           40 DMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGE---PPIMLH-TTDGGQSW  111 (327)
T ss_dssp             EEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEE---TTEEEE-ESSTTSSC
T ss_pred             EEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEEC---CCeEEE-ECCCCCCc
Confidence            344555566666 45567553 3333343222221    1234688899875 3 3444444   664433 22223321


Q ss_pred             eecc---cccccEEEEEEcCCCCEEEEcccCCeEE-EEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585           96 RYFK---GHHDRVVLLSLCSSKDCFISGSLDRTVL-LWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG  171 (304)
Q Consensus        96 ~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (304)
                      ....   .+...+..+.+.+++..++.+. ++.|. -.|  .++.-.....                            .
T Consensus       112 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~tW~~~~~----------------------------~  160 (327)
T 2xbg_A          112 SQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKD--SGKNWQALVQ----------------------------E  160 (327)
T ss_dssp             EECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESS--TTSSEEEEEC----------------------------S
T ss_pred             eECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcC--CCCCCEEeec----------------------------C
Confidence            2111   2334567777776666555553 45432 222  2222111110                            1


Q ss_pred             CCCCceEEEEecCCcEEEEeeCCCeEEE-EEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585          172 DISDANVVKFSNDGRLMLLTTMEGHIHV-LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG  250 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~-~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~  250 (304)
                      ....+..+.+.|++.+++++. +|.+.. .|- .++.-..+..  .....+..+.++++++.++.+ .+|.+++.+...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~--~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G  235 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP-GQTAWEPHNR--TTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNS  235 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEET-TSSEEEEECT-TCSSCEEEEC--CSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEE
T ss_pred             CCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC-CCCceeECCC--CCCCccceeEECCCCCEEEEe-CCceEEEecCCCC
Confidence            224567789999888776664 444443 331 1222222222  345678889999998766554 5787777643324


Q ss_pred             ceeeeeec----cCCCCceEEeCCCCcEEEEecCc
Q 036585          251 KEVASWMS----FDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       251 ~~~~~~~~----~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      +....+..    ....+..+.+.+++..++.+...
T Consensus       236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g  270 (327)
T 2xbg_A          236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAG  270 (327)
T ss_dssp             EEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTT
T ss_pred             CeeEeccCCcccCCcceEEEEecCCCEEEEEeCCC
Confidence            43332221    22357889999888877776654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.75  E-value=0.0088  Score=46.64  Aligned_cols=187  Identities=11%  Similarity=0.108  Sum_probs=93.5

Q ss_pred             EEEEeeCCCeEEEEecCCcceee-eecccccceeEEEEccCCCeEEEEec----CC----CCCceEEEEccCceeeee--
Q 036585           29 YLVTASDDESIRLYDVTAATCLK-TINSKKYGVDLVCFTSHPTTVIYSSK----NG----WDESLRLLSLHDNKYSRY--   97 (304)
Q Consensus        29 ~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~----~~----~d~~i~vwd~~~~~~~~~--   97 (304)
                      +++.|+  ..+.+||..+++-.. .+..........+...++..++.|+.    .+    ....+.+||..+++-...  
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344555  469999998776332 12111122233334457777777773    01    012377888887653221  


Q ss_pred             cccccccEEEEEEcCCCCEEEEcccC--------CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEe
Q 036585           98 FKGHHDRVVLLSLCSSKDCFISGSLD--------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSV  169 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (304)
                      +.........+.+  ++..++.|+.+        ..+.+||+.+.+-...-..+                          
T Consensus        85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p--------------------------  136 (315)
T 4asc_A           85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP--------------------------  136 (315)
T ss_dssp             BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS--------------------------
T ss_pred             CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC--------------------------
Confidence            1111111112222  56666666632        35788888766432211100                          


Q ss_pred             cCCCCCceEEEEecCCcEEEEeeC------CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC---
Q 036585          170 GGDISDANVVKFSNDGRLMLLTTM------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG---  240 (304)
Q Consensus       170 ~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---  240 (304)
                         .......+..-+++.++.|+.      -..+.+||..+.+....-.. +........+.+  ++++++.|+.++   
T Consensus       137 ---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~  210 (315)
T 4asc_A          137 ---YVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM-QTARSLFGATVH--DGRIIVAAGVTDTGL  210 (315)
T ss_dssp             ---SCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEEE--TTEEEEEEEECSSSE
T ss_pred             ---CcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCC-CCchhceEEEEE--CCEEEEEeccCCCCc
Confidence               001111122236667777765      24689999887754432211 111112222222  667777776544   


Q ss_pred             --cEEEEecCCCc
Q 036585          241 --SVHAWSVRSGK  251 (304)
Q Consensus       241 --~i~v~d~~~~~  251 (304)
                        .+.+||+.+.+
T Consensus       211 ~~~~~~yd~~~~~  223 (315)
T 4asc_A          211 TSSAEVYSITDNK  223 (315)
T ss_dssp             EEEEEEEETTTTE
T ss_pred             cceEEEEECCCCe
Confidence              48889987653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.71  E-value=0.03  Score=51.80  Aligned_cols=253  Identities=12%  Similarity=0.108  Sum_probs=136.2

Q ss_pred             CcEEEEeeC-CCeEEEEecCCcceeeeeccc-ccceeEEEEc--cCCCeEEEEecCCCCCceEEEEcc--Cceeee---e
Q 036585           27 GIYLVTASD-DESIRLYDVTAATCLKTINSK-KYGVDLVCFT--SHPTTVIYSSKNGWDESLRLLSLH--DNKYSR---Y   97 (304)
Q Consensus        27 ~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~~~~d~~i~vwd~~--~~~~~~---~   97 (304)
                      +++++.|.+ |++++|+++.+.+.+....-. .....++.+.  ....+|..|-.   ||.+.-+.+.  +++...   .
T Consensus       571 s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~---dG~l~~~~~d~~tg~l~d~r~~  647 (1158)
T 3ei3_A          571 SPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALG---DGALFYFGLNIETGLLSDRKKV  647 (1158)
T ss_dssp             CSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEET---TSEEEEEEECTTTCCEEEEEEE
T ss_pred             ccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeC---CCeEEEEEEcCCCCccccceeE
Confidence            479999997 999999999877665432211 1233334333  23457788877   8888666553  343221   1


Q ss_pred             cccccccEEEEEEcCCCC-EEEEcccCCeEEEEeCCcceeeceEEEecc---ceeEe----cCCCeEEEecCCCeEEEEe
Q 036585           98 FKGHHDRVVLLSLCSSKD-CFISGSLDRTVLLWDQRAEKCQGLLRVQGR---PAAAY----DDQGLVFGYEKGPLDIFSV  169 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~  169 (304)
                      +-+ ..++.-..+...+. .+++.+ +....+|--+ ++.. .......   ....+    .+++.++ ...+.+++..+
T Consensus       648 ~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~-~s~l~~~~v~~~~~F~se~~~~g~v~-~~~~~LrI~~i  722 (1158)
T 3ei3_A          648 TLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLV-FSNVNLKEVNYMCPLNSDGYPDSLAL-ANNSTLTIGTI  722 (1158)
T ss_dssp             ECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEE-EEEBSSSCCCEEEEECCSSSTTEEEE-ECSSCEEEEEE
T ss_pred             EcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceE-EeccChHHhceEeccCcccCCCcEEE-EcCCceEEEEe
Confidence            222 23444333433333 233333 2333333322 1111 0011110   11122    2344443 33444666665


Q ss_pred             cCC----------CCCceEEEEecCCcEEEEeeC----------------------------------------------
Q 036585          170 GGD----------ISDANVVKFSNDGRLMLLTTM----------------------------------------------  193 (304)
Q Consensus       170 ~~~----------~~~v~~~~~~~~~~~l~~~~~----------------------------------------------  193 (304)
                      ...          ...+..++++|+.+.++++..                                              
T Consensus       723 ~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  802 (1158)
T 3ei3_A          723 DEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGE  802 (1158)
T ss_dssp             CCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCC
T ss_pred             cccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCC
Confidence            432          234667888887766554331                                              


Q ss_pred             ---CCeEEEEEcCCCceeEEEEeCCCCCCcceEEE---EcCC-CcEEEEec----------CCCcEEEEecCCCceeeee
Q 036585          194 ---EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEAS---FSPE-GMFVISGS----------GDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       194 ---dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~---~s~~-~~~l~~~~----------~dg~i~v~d~~~~~~~~~~  256 (304)
                         -+.|++.|..+.+.+..+...  ....+.+++   |..+ ..+++.|+          ..|.|++|++.+++. ..+
T Consensus       803 ~~~~s~i~lidp~t~~~i~~~~l~--~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL-~lv  879 (1158)
T 3ei3_A          803 EVEVHNLLIIDQHTFEVLHAHQFL--QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL-QTV  879 (1158)
T ss_dssp             EEEEEEEEEEETTTCCEEEEEECC--TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE-EEE
T ss_pred             ceeeEEEEEEeCCCCeEEEEEeCC--CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE-EEE
Confidence               124778887778777777643  234444444   3332 46888775          357899999975433 222


Q ss_pred             --eccCCCCceEEeCCCCcEEEEecCceEEeccCCcc
Q 036585          257 --MSFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSK  291 (304)
Q Consensus       257 --~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~~~~  291 (304)
                        ....+++++++-- +|+++++.+..+++|++..++
T Consensus       880 ~~~~v~g~v~al~~~-~g~Lla~ig~~l~vy~l~~~~  915 (1158)
T 3ei3_A          880 AEKEVKGAVYSMVEF-NGKLLASINSTVRLYEWTTEK  915 (1158)
T ss_dssp             EEEEESSCEEEEEEE-TTEEEEEETTEEEEEEECTTS
T ss_pred             EEEEcCCcCEEEeee-CCEEEEEcCCEEEEEECCCCc
Confidence              2356788888733 466666666669999997654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.70  E-value=0.022  Score=49.83  Aligned_cols=230  Identities=8%  Similarity=0.004  Sum_probs=116.2

Q ss_pred             ccCcEEEEeeCC----CeEEEEecCCcceeeee-c-----cc-ccceeEEEEcc-CCCeEEEEecCCC---CCceEEEEc
Q 036585           25 EVGIYLVTASDD----ESIRLYDVTAATCLKTI-N-----SK-KYGVDLVCFTS-HPTTVIYSSKNGW---DESLRLLSL   89 (304)
Q Consensus        25 ~~~~~l~~~~~d----~~i~vw~~~~~~~~~~~-~-----~~-~~~v~~~~~~~-~~~~l~~~~~~~~---d~~i~vwd~   89 (304)
                      .++.+++.|+.+    ..+.+||..+++-...- .     .. ...-.+++..+ +++.++.|+..+.   -..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456777788753    35888888766432221 1     11 11123344443 6777777775321   246889999


Q ss_pred             cCceeeee--cccccccEEEEEEcCCCCEEEEcccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           90 HDNKYSRY--FKGHHDRVVLLSLCSSKDCFISGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        90 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                      .+.+-...  +...... .++....++..++.|+.++  .+.+||+.+.+....-.....+                   
T Consensus       476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p-------------------  535 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFF-------------------  535 (695)
T ss_dssp             TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGG-------------------
T ss_pred             CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCC-------------------
Confidence            88653322  2111111 1223323778888887654  6889998876543221100000                   


Q ss_pred             EEEecCCCCCceEEEEecC-CcEEEEeeC--C-----CeEEEEEcCCCce-----eEEEEeC-CCCCCcceEEEEcCCCc
Q 036585          166 IFSVGGDISDANVVKFSND-GRLMLLTTM--E-----GHIHVLDSFRGTL-----LSTYNVK-PVSRNSTLEASFSPEGM  231 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----g~i~~~d~~~~~~-----~~~~~~~-~~~~~~i~~~~~s~~~~  231 (304)
                           ........+.+..+ ++.++.|+.  +     ..+.+||+.+.+.     -..+... ....... +++...+++
T Consensus       536 -----~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~  609 (695)
T 2zwa_A          536 -----QNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRK  609 (695)
T ss_dssp             -----GSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTE
T ss_pred             -----CcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCE
Confidence                 01112233555554 667777765  2     4689999988772     1222211 1111222 233333377


Q ss_pred             EEEEecC--------CCcEEEEecCCCceeeeee--cc------CCCC-ceEEeCCCCcEEEEecCc
Q 036585          232 FVISGSG--------DGSVHAWSVRSGKEVASWM--SF------DTEP-PVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       232 ~l~~~~~--------dg~i~v~d~~~~~~~~~~~--~~------~~~i-~~~~~~~~~~~l~s~~~d  281 (304)
                      +++.|+.        ...+.+||+.+.+-. ...  ..      .... .+....+++++++.|+..
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~  675 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA  675 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEE
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCCc
Confidence            7777763        346999999876432 111  00      0001 234444566777777754

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.63  E-value=0.015  Score=45.90  Aligned_cols=152  Identities=12%  Similarity=0.132  Sum_probs=83.6

Q ss_pred             cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEE
Q 036585          102 HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF  181 (304)
Q Consensus       102 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  181 (304)
                      -...+.++|.|++.++++--..|.|++++...++..........  .                     .........|++
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v--~---------------------~~g~~GllGia~   87 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV--S---------------------PSGEGGLLGIAL   87 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC--C---------------------CBTTBSEEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce--e---------------------ecCCCCceeeEe
Confidence            34568999999998777765589999998655443211111000  0                     012345678999


Q ss_pred             ecC---CcEEEEe---eCCCeEEEEEcCCCc--------eeEEEE-eCCCCCCcceEEEEcCCCcEEEEecC--------
Q 036585          182 SND---GRLMLLT---TMEGHIHVLDSFRGT--------LLSTYN-VKPVSRNSTLEASFSPEGMFVISGSG--------  238 (304)
Q Consensus       182 ~~~---~~~l~~~---~~dg~i~~~d~~~~~--------~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~--------  238 (304)
                      +|+   +..|++.   ..++.|.-|....+.        ....+. ........-..+.|.|||.+.++.+.        
T Consensus        88 ~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~q  167 (347)
T 3das_A           88 SPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQ  167 (347)
T ss_dssp             CTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTT
T ss_pred             ccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCcccc
Confidence            985   3344432   234566667655411        111121 11122334567999999987666432        


Q ss_pred             -----CCcEEEEecCCCce--------eeee-eccCCCCceEEeCCCCcEEEEe
Q 036585          239 -----DGSVHAWSVRSGKE--------VASW-MSFDTEPPVIKWAPGSLMFVTG  278 (304)
Q Consensus       239 -----dg~i~v~d~~~~~~--------~~~~-~~~~~~i~~~~~~~~~~~l~s~  278 (304)
                           .|.|.-.+.. ++.        ...+ .+|. ....++|+|+|.+.++=
T Consensus       168 d~~~~~G~IlRi~~d-G~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d  219 (347)
T 3das_A          168 DRKSLGGKILRMTPD-GEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             CTTCSTTCEEEECTT-SSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEE
T ss_pred             CCCCCCCEEEEEeCC-CCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEe
Confidence                 2445545543 220        1122 2343 45789999988766543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.62  E-value=0.0084  Score=47.66  Aligned_cols=106  Identities=10%  Similarity=0.105  Sum_probs=60.4

Q ss_pred             cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec
Q 036585          104 RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN  183 (304)
Q Consensus       104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (304)
                      ....++|.|+++++++ ..+|.|++++  .++........   .                     ..........++++|
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~---v---------------------~~~g~~~p~gia~~p   84 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELS---V---------------------YHRGESGLLGLALHP   84 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECC---C---------------------CCSTTCSEEEEEECT
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecce---E---------------------eecCCCCceeEEECC
Confidence            4678999999985554 5569999988  33321111100   0                     001234567899999


Q ss_pred             C---CcEEEEeeC-C-----CeEEEEEcCCCce---eEEEE-eC--CCCCCcceEEEEcCCCcEEEEe
Q 036585          184 D---GRLMLLTTM-E-----GHIHVLDSFRGTL---LSTYN-VK--PVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       184 ~---~~~l~~~~~-d-----g~i~~~d~~~~~~---~~~~~-~~--~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                      +   +..|+++.. .     +.|..|+...++.   ...+. ..  .........++|.|||.+.++.
T Consensus        85 df~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A           85 RFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             TTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             CCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            8   555555443 2     6788888765421   11111 11  1122234679999999766654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.61  E-value=0.005  Score=57.02  Aligned_cols=210  Identities=11%  Similarity=0.159  Sum_probs=120.4

Q ss_pred             ecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC-ceeeeecccc
Q 036585           23 SMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD-NKYSRYFKGH  101 (304)
Q Consensus        23 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~-~~~~~~~~~~  101 (304)
                      ..|..+.||.-. ..++.|+|+++.+.+....... +|.-=.|-.. +.|+..+    +..|+-|++.. ..+++.+..|
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~-~~l~lVT----~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT----DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCC-CeeEEEc----CCeEEEeccCCCCccHHHHhcc
Confidence            445667777665 5789999999887776666544 5666666644 4555555    67999999974 3455556555


Q ss_pred             ----cccEEEEEEcCCCCEEEEcc-------cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585          102 ----HDRVVLLSLCSSKDCFISGS-------LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus       102 ----~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                          ...|.....+++.++++..+       ..|.+.+|..+.+.... +..+.....                 -+.+.
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~-iegha~~F~-----------------~~~~~  207 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAASFA-----------------QFKME  207 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh-hhHhHhhhh-----------------eeccC
Confidence                34677788888888776533       35778888876543321 111110000                 01111


Q ss_pred             CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC---ceeE-----EEEe-CCCCCCcceEEEEcCCCcEEEEecCCCc
Q 036585          171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG---TLLS-----TYNV-KPVSRNSTLEASFSPEGMFVISGSGDGS  241 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~-----~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~  241 (304)
                      +...+..-++|.....      ..+++++.++...   ....     .+.. +.....-..++..|+.-..++.-+.-|.
T Consensus       208 ~~~~~~~l~~f~~~~~------~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~  281 (1630)
T 1xi4_A          208 GNAEESTLFCFAVRGQ------AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY  281 (1630)
T ss_pred             CCCCCceEEEEEEecC------CCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce
Confidence            1112222222221111      1257888877432   1111     1111 1112333446788887778888889999


Q ss_pred             EEEEecCCCceeeeeeccCCCC
Q 036585          242 VHAWSVRSGKEVASWMSFDTEP  263 (304)
Q Consensus       242 i~v~d~~~~~~~~~~~~~~~~i  263 (304)
                      |++||+.++.++..-+-...+|
T Consensus       282 ~~~~d~~t~~~i~~~ris~~~i  303 (1630)
T 1xi4_A          282 IHLYDLETGTCIYMNRISGETI  303 (1630)
T ss_pred             EEEEecccchhhhhccccCCce
Confidence            9999999998765543333333

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.54  E-value=0.0095  Score=46.47  Aligned_cols=191  Identities=13%  Similarity=0.091  Sum_probs=94.7

Q ss_pred             ccCcEEEEeeC----C-------CeEEEEecCCcceee--eecccccceeEEEEccCCCeEEEEecC-----CCCCceEE
Q 036585           25 EVGIYLVTASD----D-------ESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKN-----GWDESLRL   86 (304)
Q Consensus        25 ~~~~~l~~~~~----d-------~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~~d~~i~v   86 (304)
                      .++++++.|+.    +       ..+.+||..+.+-..  .+......- +++. -+++.++.|+..     ..-..+.+
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~  121 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLGE-ALNSIYVVGGREIKDGERCLDSVMC  121 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEEE-ETTEEEEECCEESSTTCCBCCCEEE
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEEE-ECCEEEEEeCCcCCCCCcccceEEE
Confidence            46777888873    1       126778887654321  111111111 2222 256666666631     12356889


Q ss_pred             EEccCceeee--ecccccccEEEEEEcCCCCEEEEccc-C-----CeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585           87 LSLHDNKYSR--YFKGHHDRVVLLSLCSSKDCFISGSL-D-----RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG  158 (304)
Q Consensus        87 wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (304)
                      ||..+++-..  .+........++.  -+++.++.|+. +     ..+.+||+.+.+-...-..+               
T Consensus       122 ~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p---------------  184 (315)
T 4asc_A          122 YDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ---------------  184 (315)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS---------------
T ss_pred             ECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC---------------
Confidence            9998765322  1211111111222  35667777765 2     35788888766433221100               


Q ss_pred             ecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCC-----eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEE
Q 036585          159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG-----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  233 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  233 (304)
                                  ........+  .-+++.++.|+.++     .+.+||+.+.+....-. .+........+.+  +++++
T Consensus       185 ------------~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~l~  247 (315)
T 4asc_A          185 ------------TARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA-FPQERSSLSLVSL--VGTLY  247 (315)
T ss_dssp             ------------SCCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC-CSSCCBSCEEEEE--TTEEE
T ss_pred             ------------CchhceEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEEECCC-CCCcccceeEEEE--CCEEE
Confidence                        000111112  22667777776654     58899998775544322 1111222222222  66777


Q ss_pred             EEecCC--------------CcEEEEecCCCc
Q 036585          234 ISGSGD--------------GSVHAWSVRSGK  251 (304)
Q Consensus       234 ~~~~~d--------------g~i~v~d~~~~~  251 (304)
                      +.|+.+              ..+.+||+.+.+
T Consensus       248 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          248 AIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             EECCccccCcCCccccccccCcEEEecCCCCh
Confidence            777653              237788887654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.54  E-value=0.018  Score=44.60  Aligned_cols=100  Identities=8%  Similarity=0.039  Sum_probs=55.3

Q ss_pred             cccCcEEEEee--CCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCC-----------CCCceEEEEcc
Q 036585           24 MEVGIYLVTAS--DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG-----------WDESLRLLSLH   90 (304)
Q Consensus        24 ~~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-----------~d~~i~vwd~~   90 (304)
                      +.+|.+|+...  .++.|...+.+ +.....+....    +--+++++..|+......           ....|+..++.
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~~----~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSNDT----AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEEE----EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccCCc----eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            35666666654  24556666654 33344444322    345578999999887521           02467777777


Q ss_pred             CceeeeecccccccEEEEEEcCCCCEEEEcc----cCCeEEEEeCCc
Q 036585           91 DNKYSRYFKGHHDRVVLLSLCSSKDCFISGS----LDRTVLLWDQRA  133 (304)
Q Consensus        91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~  133 (304)
                      .++......   ..  +..|+++++.|+-..    ....|...++..
T Consensus        97 g~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG  138 (302)
T 3s25_A           97 GHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG  138 (302)
T ss_dssp             SCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTS
T ss_pred             CCcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCC
Confidence            665333222   11  225677888777665    334555556553

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.54  E-value=0.021  Score=45.35  Aligned_cols=94  Identities=9%  Similarity=0.109  Sum_probs=45.9

Q ss_pred             cCcEEEEeeCC-CeEEEEecCC--c--ceeeeec-ccccceeEEEEccCCCeEEEEec-C------CCCCceEEEEccCc
Q 036585           26 VGIYLVTASDD-ESIRLYDVTA--A--TCLKTIN-SKKYGVDLVCFTSHPTTVIYSSK-N------GWDESLRLLSLHDN   92 (304)
Q Consensus        26 ~~~~l~~~~~d-~~i~vw~~~~--~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-~------~~d~~i~vwd~~~~   92 (304)
                      ++++++.|+.+ ..+.++|..+  .  +.+..+. ..... .+++. -+++.++.|+. .      ..-..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ-ATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS-CEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc-ceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            66777777643 4688888863  2  2222222 11111 12222 25666666654 1      01246888998876


Q ss_pred             eeeee--cc-cccccEEEEEEcCCCCEEEEcccC
Q 036585           93 KYSRY--FK-GHHDRVVLLSLCSSKDCFISGSLD  123 (304)
Q Consensus        93 ~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~d  123 (304)
                      +-...  +. .......++.  .++++++.|+.+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             cEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            53322  11 1111112222  466677777654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.49  E-value=0.0089  Score=46.46  Aligned_cols=190  Identities=11%  Similarity=0.113  Sum_probs=96.2

Q ss_pred             cCcEEEEeeC----C-----CeEEEEecCCcceee--eecccccceeEEEEccCCCeEEEEecCC--CCCceEEEEccCc
Q 036585           26 VGIYLVTASD----D-----ESIRLYDVTAATCLK--TINSKKYGVDLVCFTSHPTTVIYSSKNG--WDESLRLLSLHDN   92 (304)
Q Consensus        26 ~~~~l~~~~~----d-----~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~d~~i~vwd~~~~   92 (304)
                      ++.+++.|+.    +     ..+.+||..+.+-..  .+.........+.+  +++.++.|+..+  .-..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5667777775    2     357888887654222  12211112222222  666677766421  1246888998876


Q ss_pred             eeeee--cccccccEEEEEEcCCCCEEEEcccC-----CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           93 KYSRY--FKGHHDRVVLLSLCSSKDCFISGSLD-----RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        93 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                      +-...  +......-.++.+  ++..++.|+.+     ..+.+||+.+.+-...-..+                      
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p----------------------  203 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN----------------------  203 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS----------------------
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC----------------------
Confidence            53322  2111111122222  56677777654     35778887766433221100                      


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEeeCC-----CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-  239 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-  239 (304)
                           ........+.+  +++.++.|+.+     ..+.+||+.+.+....-.. +........+.  -++++++.|+.+ 
T Consensus       204 -----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~--~~~~i~v~GG~~~  273 (308)
T 1zgk_A          204 -----TIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM-KHRRSALGITV--HQGRIYVLGGYDG  273 (308)
T ss_dssp             -----SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEE--ETTEEEEECCBCS
T ss_pred             -----CccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC-CCCccceEEEE--ECCEEEEEcCcCC
Confidence                 00011122222  67777777654     4699999987765432211 11111222222  267777777644 


Q ss_pred             ----CcEEEEecCCCc
Q 036585          240 ----GSVHAWSVRSGK  251 (304)
Q Consensus       240 ----g~i~v~d~~~~~  251 (304)
                          ..+.+||+.+.+
T Consensus       274 ~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          274 HTFLDSVECYDPDTDT  289 (308)
T ss_dssp             SCBCCEEEEEETTTTE
T ss_pred             CcccceEEEEcCCCCE
Confidence                357888887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.019  Score=45.05  Aligned_cols=114  Identities=8%  Similarity=0.030  Sum_probs=72.3

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccc-cceeEEEE--ccCCCeEEEE--ecCCCCCceEEEEccCceeeeeccc-
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKK-YGVDLVCF--TSHPTTVIYS--SKNGWDESLRLLSLHDNKYSRYFKG-  100 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~--~~~~~~l~~~--~~~~~d~~i~vwd~~~~~~~~~~~~-  100 (304)
                      +.+++.++.||.|.-+|.++|+.+-+++... .++....-  .+.+..++.+  ..   ||.|..++..+|.....+.. 
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~---dG~l~a~~~~~G~~~~~~~~~   86 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFG---DGNIYYFNAHQGLQKLPLSIR   86 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCST---TTEEEEEETTTEEEEEEEEHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECC---CCEEEEEECCCCcEEeeeccc
Confidence            5688999999999999999999888776541 22222110  0112234443  34   99999999888754433221 


Q ss_pred             ---ccccEEE---EEE-----cCCCCEEEEcccCCeEEEEeCCcceeeceEEEe
Q 036585          101 ---HHDRVVL---LSL-----CSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ  143 (304)
Q Consensus       101 ---~~~~v~~---~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  143 (304)
                         ...++..   ...     ...+..+++++.+|.+...|+++++.+..+...
T Consensus        87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence               1112221   000     013557899999999999999999988877543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.46  E-value=0.024  Score=44.17  Aligned_cols=188  Identities=14%  Similarity=0.176  Sum_probs=92.0

Q ss_pred             cEEEEeeCCCeEEEEecCCcceee-eecccccceeEEEEccCCCeEEEEecC----C----CCCceEEEEccCceeeee-
Q 036585           28 IYLVTASDDESIRLYDVTAATCLK-TINSKKYGVDLVCFTSHPTTVIYSSKN----G----WDESLRLLSLHDNKYSRY-   97 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~----~----~d~~i~vwd~~~~~~~~~-   97 (304)
                      .+++.|+.  .+..||..+++-.. .+..........+...++..++.|+..    +    ....+.+||..+.+-... 
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   94 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP   94 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred             hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence            44555553  48899988776433 111111122233344567777777731    0    011277888877653322 


Q ss_pred             -cccccccEEEEEEcCCCCEEEEcccC-------CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEe
Q 036585           98 -FKGHHDRVVLLSLCSSKDCFISGSLD-------RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSV  169 (304)
Q Consensus        98 -~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (304)
                       +.........+.+  ++..++.|+.+       ..+.+||+.+.+-...-..+..                        
T Consensus        95 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~------------------------  148 (318)
T 2woz_A           95 PLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK------------------------  148 (318)
T ss_dssp             CBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC------------------------
T ss_pred             CCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc------------------------
Confidence             1111111122222  56666666653       2477788776654322110000                        


Q ss_pred             cCCCCCceEEEEecCCcEEEEeeC------CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC----
Q 036585          170 GGDISDANVVKFSNDGRLMLLTTM------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD----  239 (304)
Q Consensus       170 ~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----  239 (304)
                         ... .+++. .+++.++.|+.      -..+.+||+.+.+....-.. +........+.  -+++.++.|+.+    
T Consensus       149 ---r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~--~~~~iyv~GG~~~~~~  220 (318)
T 2woz_A          149 ---VYG-HNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM-KTPRSMFGVAI--HKGKIVIAGGVTEDGL  220 (318)
T ss_dssp             ---EES-CEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEE--ETTEEEEEEEEETTEE
T ss_pred             ---ccc-cEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC-CCCcccceEEE--ECCEEEEEcCcCCCCc
Confidence               001 11222 46676777654      24589999988764433211 11112222222  266777777643    


Q ss_pred             -CcEEEEecCCCc
Q 036585          240 -GSVHAWSVRSGK  251 (304)
Q Consensus       240 -g~i~v~d~~~~~  251 (304)
                       ..+.+||+.+.+
T Consensus       221 ~~~~~~yd~~~~~  233 (318)
T 2woz_A          221 SASVEAFDLKTNK  233 (318)
T ss_dssp             EEEEEEEETTTCC
T ss_pred             cceEEEEECCCCe
Confidence             357789987654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.43  E-value=0.033  Score=45.94  Aligned_cols=114  Identities=8%  Similarity=0.083  Sum_probs=61.8

Q ss_pred             ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEe
Q 036585          103 DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS  182 (304)
Q Consensus       103 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  182 (304)
                      ...+.++|.|+|+++++-...+.|++++..++.............                     .......+..|+|+
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~---------------------~~~g~~Gllgia~~   85 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN---------------------DADGQNGLLGFAFH   85 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC---------------------CTTSSCSEEEEEEC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcccc---------------------ccCCCCceeEEEEC
Confidence            356799999999877765444578888765443322111111000                     00123456789999


Q ss_pred             cC---CcEEEEeeC-------------CCeEEEEEcCCC--ce---eEEEE-eCCCCCCcceEEEEcCCCcEEEEec
Q 036585          183 ND---GRLMLLTTM-------------EGHIHVLDSFRG--TL---LSTYN-VKPVSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       183 ~~---~~~l~~~~~-------------dg~i~~~d~~~~--~~---~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                      |+   +..|+++..             ...|.-|+...+  +.   ...+. ...........++|.|||.+.++.+
T Consensus        86 Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           86 PDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            95   445554432             235666665432  11   11121 1112234568899999998766644

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.41  E-value=0.028  Score=43.80  Aligned_cols=192  Identities=11%  Similarity=0.060  Sum_probs=92.8

Q ss_pred             cccCcEEEEeeC----CC-------eEEEEecCCcceeee--ecccccceeEEEEccCCCeEEEEecCC----CCCceEE
Q 036585           24 MEVGIYLVTASD----DE-------SIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNG----WDESLRL   86 (304)
Q Consensus        24 ~~~~~~l~~~~~----d~-------~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~----~d~~i~v   86 (304)
                      ..++.+++.|+.    ++       .+.+||..+.+-...  +...... .+++. -+++.++.|+...    .-..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGE-VDDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEE-ETTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEE-ECCEEEEEcCccCCCCcccceEEE
Confidence            345777777773    12       167788776543221  1111111 12222 2666777776510    1145788


Q ss_pred             EEccCceeeee--cccccccEEEEEEcCCCCEEEEccc------CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585           87 LSLHDNKYSRY--FKGHHDRVVLLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG  158 (304)
Q Consensus        87 wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (304)
                      ||..+.+-...  +......-.++.  .+++.++.|+.      -..+.+||+.+.+-...-..+               
T Consensus       132 yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p---------------  194 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK---------------  194 (318)
T ss_dssp             EETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS---------------
T ss_pred             EeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC---------------
Confidence            88887653322  111111111122  35666677664      235888888776533221100               


Q ss_pred             ecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC-----CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEE
Q 036585          159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  233 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  233 (304)
                                  ..... .+++. -+++.++.|+.+     ..+.+||+.+.+....-.. +........+.  .+++++
T Consensus       195 ------------~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~--~~~~i~  257 (318)
T 2woz_A          195 ------------TPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF-PQERSSISLVS--LAGSLY  257 (318)
T ss_dssp             ------------SCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCC-SSCCBSCEEEE--ETTEEE
T ss_pred             ------------CCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCC-CCcccceEEEE--ECCEEE
Confidence                        00011 11222 256777776543     3578899887664432211 11111222222  356777


Q ss_pred             EEecCC--------------CcEEEEecCCCc
Q 036585          234 ISGSGD--------------GSVHAWSVRSGK  251 (304)
Q Consensus       234 ~~~~~d--------------g~i~v~d~~~~~  251 (304)
                      +.|+.+              ..+.+||+.+.+
T Consensus       258 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          258 AIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             EECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             EECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            777643              357888887654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.31  E-value=0.021  Score=45.34  Aligned_cols=58  Identities=10%  Similarity=0.056  Sum_probs=30.5

Q ss_pred             eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC------cEEEEecCCCceeeee
Q 036585          196 HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG------SVHAWSVRSGKEVASW  256 (304)
Q Consensus       196 ~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------~i~v~d~~~~~~~~~~  256 (304)
                      .+.+||+.+.+....-..+ .....-.+  ...++++++.|+.++      .|.++++++++.+...
T Consensus       286 ~~~~yd~~~~~W~~~~~~p-~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELS-QGRAYGVS--LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             CCEEEECC---CEEEEECS-SCCBSSEE--EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             eEEEEecCCCceeeCCCCC-CCccccee--EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            5788998876654433321 22222222  234777888887542      4666788877765443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.28  E-value=0.045  Score=43.45  Aligned_cols=68  Identities=15%  Similarity=0.117  Sum_probs=45.4

Q ss_pred             cceEEEEcC-------CCcEEEEecCCCcEEEEecCCCceeee--e-eccCCCCceEEeCCCCcEEEEec-CceEEecc
Q 036585          220 STLEASFSP-------EGMFVISGSGDGSVHAWSVRSGKEVAS--W-MSFDTEPPVIKWAPGSLMFVTGS-SELSFWIP  287 (304)
Q Consensus       220 ~i~~~~~s~-------~~~~l~~~~~dg~i~v~d~~~~~~~~~--~-~~~~~~i~~~~~~~~~~~l~s~~-~d~~iw~~  287 (304)
                      ....+.|..       +|+++++.-..+.|...++..++....  + ......+..+++.|||.+.++.. .+.+||.+
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri  350 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKV  350 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEEEE
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEEEE
Confidence            455677753       577777777778888888876544322  2 22345789999999998766544 33777765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.28  E-value=0.025  Score=41.16  Aligned_cols=153  Identities=9%  Similarity=0.016  Sum_probs=83.1

Q ss_pred             cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec
Q 036585          104 RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN  183 (304)
Q Consensus       104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (304)
                      .+..++|+|++.+.++  .+|.++-.+..+.....-+.. ...                   +=+  ..-..-.++.|.|
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~-------------------IG~--~Gw~~F~a~~fD~   97 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKK-------------------IGN--GGWNQFQFLFFDP   97 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEE-------------------EEC--SCGGGCSEEEECT
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccE-------------------ecc--cccccceEEEECC
Confidence            6679999999986665  678776666544222111100 000                   000  0001146789999


Q ss_pred             CCcEEEEeeCCCeEEEEEcCCCceeE-----EEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce------
Q 036585          184 DGRLMLLTTMEGHIHVLDSFRGTLLS-----TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE------  252 (304)
Q Consensus       184 ~~~~l~~~~~dg~i~~~d~~~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~------  252 (304)
                      +|.+.++  .||.|+-++-.+.....     +.. ....-..+..+.|.|+|.+.+..  |+.++-....+...      
T Consensus        98 ~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~v-g~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~  172 (236)
T 1tl2_A           98 NGYLYAV--SKDKLYKASPPQSDTDNWIARATEV-GSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLAR  172 (236)
T ss_dssp             TSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEE-ECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHH
T ss_pred             CCCEEEe--CCCEEEEeCCCcCCCCceeccccEe-ccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccc
Confidence            9987776  56999888753321110     111 00123567899999999877666  77654333221110      


Q ss_pred             eeeee-ccCCCCceEEeCCCCcEEEEecCceEEecc
Q 036585          253 VASWM-SFDTEPPVIKWAPGSLMFVTGSSELSFWIP  287 (304)
Q Consensus       253 ~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~  287 (304)
                      ...+. ..-...+-+.|.|++.+.+..  +.++|..
T Consensus       173 ~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y~~  206 (236)
T 1tl2_A          173 ATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFYED  206 (236)
T ss_dssp             CEEEESSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred             cceeccCCcceEEEEEECCCCcEEEEe--CCeEEec
Confidence            11111 112233446799999877776  5556543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.25  E-value=0.017  Score=42.06  Aligned_cols=67  Identities=1%  Similarity=-0.034  Sum_probs=44.0

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccccccc--------EEEEEEcCCCCEEEEcccCCeEEEE
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDR--------VVLLSLCSSKDCFISGSLDRTVLLW  129 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg~i~iw  129 (304)
                      ..+..++|+|++...++  .   ++.++-.+..+.+...-+. ....        ..++.|.|+|.+.++  .||.|+-+
T Consensus        41 ~~~~~laf~P~G~LYaV--~---~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~  112 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--L---NDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKA  112 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--E---TTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEE
T ss_pred             ccceeEEECCCccEEEE--e---CCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe--CCCEEEEe
Confidence            36789999998886666  4   7777666654432211111 1222        378899999987777  56998887


Q ss_pred             eCC
Q 036585          130 DQR  132 (304)
Q Consensus       130 d~~  132 (304)
                      +.-
T Consensus       113 ~pP  115 (236)
T 1tl2_A          113 SPP  115 (236)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            753

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.24  E-value=0.056  Score=43.71  Aligned_cols=235  Identities=10%  Similarity=0.130  Sum_probs=133.7

Q ss_pred             CcEEEEee---CCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccc
Q 036585           27 GIYLVTAS---DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHD  103 (304)
Q Consensus        27 ~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~  103 (304)
                      .+|+..--   .+..|.|-|+.++..+..-.   -..-+.-.+|..+.++.-.    ...+.++|+++.+.++.+.- ..
T Consensus        35 DkyicVrE~~~~~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALra----g~~lQiFnle~K~klks~~~-~e  106 (494)
T 1bpo_A           35 DKFICIREKVGEQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA----GKTLQIFNIEMKSKMKAHTM-TD  106 (494)
T ss_dssp             TTEEEEEECCTTCCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEE----TTEEEEEETTTTEEEEEEEC-SS
T ss_pred             CceEEEEecCCCCCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEec----CCeEEEEchHHhhhhcceec-CC
Confidence            45555443   23378888888765542211   1233566788888777775    78999999999988887764 34


Q ss_pred             cEEEEEEcCCCCEEEEcccCCeEEEEeCCc-ceeeceEEEeccc----ee--EecCCCeEE---Ee------cCCCeEEE
Q 036585          104 RVVLLSLCSSKDCFISGSLDRTVLLWDQRA-EKCQGLLRVQGRP----AA--AYDDQGLVF---GY------EKGPLDIF  167 (304)
Q Consensus       104 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~----~~--~~~~~~~~~---~~------~~~~~~~~  167 (304)
                      .|.-=.|-.+. .|+-.+ +..|+.|++.. ..+.+.+..+...    ++  ..+++...+   +.      -.|.+.+|
T Consensus       107 ~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLY  184 (494)
T 1bpo_A          107 DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY  184 (494)
T ss_dssp             CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred             CceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEe
Confidence            55555665444 344433 36799999974 3344444433221    12  234444222   11      12455566


Q ss_pred             EecC--------CCCCceEEEEec--C-CcEEEEeeC---CCeEEEEEcCCC---c-----eeEEEEe-CCCCCCcceEE
Q 036585          168 SVGG--------DISDANVVKFSN--D-GRLMLLTTM---EGHIHVLDSFRG---T-----LLSTYNV-KPVSRNSTLEA  224 (304)
Q Consensus       168 ~~~~--------~~~~v~~~~~~~--~-~~~l~~~~~---dg~i~~~d~~~~---~-----~~~~~~~-~~~~~~~i~~~  224 (304)
                      ..+.        |-.....+.+..  . .+.|+.+..   .+++++.++...   .     ....+.. +.....-..++
T Consensus       185 S~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvam  264 (494)
T 1bpo_A          185 SVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM  264 (494)
T ss_dssp             ESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEE
T ss_pred             eccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEE
Confidence            5443        222221222211  1 123444433   378999998532   1     1111111 11223445568


Q ss_pred             EEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCC
Q 036585          225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       225 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~  271 (304)
                      ..|+.-..++.-+.-|.|++||+.++.++..-+-...+|..-+-+..
T Consensus       265 qvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~  311 (494)
T 1bpo_A          265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA  311 (494)
T ss_dssp             EEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred             EecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCC
Confidence            88988888888899999999999999998776655555554444443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.14  E-value=0.088  Score=44.00  Aligned_cols=105  Identities=12%  Similarity=0.053  Sum_probs=65.3

Q ss_pred             CceEEEEecCCcEEEEee-CCCeEEEEEcCCC------ce---eEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEE
Q 036585          175 DANVVKFSNDGRLMLLTT-MEGHIHVLDSFRG------TL---LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHA  244 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~------~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v  244 (304)
                      ....+..+|||+++++++ .+.++.++|++.-      +.   ...........-.....+|+++|+-..+---|..|.-
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence            345688999999988865 4779999998742      11   1111111123445566899999965666678999999


Q ss_pred             EecCCC----------ceeeeeeccCCCC-----ceEEeCCCCcEEEEec
Q 036585          245 WSVRSG----------KEVASWMSFDTEP-----PVIKWAPGSLMFVTGS  279 (304)
Q Consensus       245 ~d~~~~----------~~~~~~~~~~~~i-----~~~~~~~~~~~l~s~~  279 (304)
                      |++...          ..+..+.-|-.+-     .+=.-.|+|++|++..
T Consensus       404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            999653          2344443332211     1112256888888764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.03  E-value=0.081  Score=41.74  Aligned_cols=219  Identities=12%  Similarity=0.091  Sum_probs=117.4

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcce--eeee----cccccceeEEEEccC---CCeEEEE-ecCCCCCceEE
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATC--LKTI----NSKKYGVDLVCFTSH---PTTVIYS-SKNGWDESLRL   86 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~l~~~-~~~~~d~~i~v   86 (304)
                      ++..+.+.++|+++++--..|.|++++..+++.  +..+    .........|+++|+   +..|++. +.. .++.|.-
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~-~~~~v~R  111 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA-SDNRIVR  111 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS-SSEEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC-CCCEEEE
Confidence            455688999999877766589999998665543  2222    123457889999995   3444443 211 1556666


Q ss_pred             EEccCce----------ee-eecc-cccccEEEEEEcCCCCEEEEccc-------------CCeEEEEeCCcce------
Q 036585           87 LSLHDNK----------YS-RYFK-GHHDRVVLLSLCSSKDCFISGSL-------------DRTVLLWDQRAEK------  135 (304)
Q Consensus        87 wd~~~~~----------~~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~~------  135 (304)
                      |.+..+.          .+ ..+. .....-..+.|.|+|.++++.+.             .|.|.-.+....-      
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf  191 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF  191 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence            6665421          11 1111 11123456999999987777542             3555555554220      


Q ss_pred             -eeceEE--EeccceeEecCCCeEEEecCCC---eEEEEecC--C-------------------------CCCceEEEEe
Q 036585          136 -CQGLLR--VQGRPAAAYDDQGLVFGYEKGP---LDIFSVGG--D-------------------------ISDANVVKFS  182 (304)
Q Consensus       136 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~-------------------------~~~v~~~~~~  182 (304)
                       ....+.  .....-+++++++.++..+.+.   -.+..+..  +                         ......++|.
T Consensus       192 ~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~  271 (347)
T 3das_A          192 PGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA  271 (347)
T ss_dssp             TTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE
T ss_pred             CCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE
Confidence             011222  1223457788888777665543   22222211  0                         0122344554


Q ss_pred             cCCcEEEEeeCCCeEEEEEcCCCceeEE-EEeCCCCCCcceEEEEcCCCcEEEEec
Q 036585          183 NDGRLMLLTTMEGHIHVLDSFRGTLLST-YNVKPVSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       183 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                       +|..++..-..+.|....+........ -.........+..++..|||.++++.+
T Consensus       272 -~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          272 -EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             -TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             -cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence             355555555556676666655432111 111112346788899999997666543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.02  E-value=0.075  Score=41.13  Aligned_cols=202  Identities=7%  Similarity=0.024  Sum_probs=110.7

Q ss_pred             EeecccCcEEEEeeCC--------------CeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEe--cCCCCCce
Q 036585           21 LQSMEVGIYLVTASDD--------------ESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSS--KNGWDESL   84 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d--------------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~d~~i   84 (304)
                      --+.++|++|+-+...              ..|+..++...+.. .+...    ....|+++++.|+...  .. ....|
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~~----~~~~~s~~g~~Iy~~~~~~~-~~~~I  131 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDPD----PCIYASLIGNYIYYLHYDTQ-TATSL  131 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEECS----CEEEEEEETTEEEEEEESSS-SCEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-EeecC----CccEEEEeCCEEEEEeecCC-CCceE
Confidence            3456778888877643              35777777655432 22221    1236788999998876  21 15566


Q ss_pred             EEEEccCceeeeecccccccEEEEEEcCCCCEEEEccc-CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCC
Q 036585           85 RLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGP  163 (304)
Q Consensus        85 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (304)
                      +..++.... ...+..+..    ..++++++.|+-.+. ...|...++..+.....+.  +                   
T Consensus       132 y~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~-------------------  185 (302)
T 3s25_A          132 YRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--C-------------------  185 (302)
T ss_dssp             EEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--S-------------------
T ss_pred             EEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--C-------------------
Confidence            666766433 333333322    346777777775544 5678887876654432221  0                   


Q ss_pred             eEEEEecCCCCCceEEEEecCCcEEEEeeCC--CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec--CC
Q 036585          164 LDIFSVGGDISDANVVKFSNDGRLMLLTTME--GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS--GD  239 (304)
Q Consensus       164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~d  239 (304)
                                 .. ...+.|++.+|+-....  ..|..-++..... ..+.     ...+  ..|+|++++|+.++  ..
T Consensus       186 -----------~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt-----~~~~--~~~~~~g~~Iy~~~~~~~  245 (302)
T 3s25_A          186 -----------NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT-----EANI--EHYNVYGSLIFYQRGGDN  245 (302)
T ss_dssp             -----------CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS-----CSCE--EEEEEETTEEEEEECSSS
T ss_pred             -----------Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe-----CCCc--ceEEECCCEEEEEECCCC
Confidence                       11 12356888888766543  3677777665442 2222     1222  34788888887653  23


Q ss_pred             CcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEec
Q 036585          240 GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGS  279 (304)
Q Consensus       240 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  279 (304)
                      +.|..-++.. .....+...  .+.  .+++.+.+++-..
T Consensus       246 ~~i~~~~~DG-~~r~~l~~~--~~~--~i~i~~d~Iy~td  280 (302)
T 3s25_A          246 PALCVVKNDG-TGFKELAKG--EFC--NINVTSQYVYFTD  280 (302)
T ss_dssp             CEEEEEETTS-CCCEEEEES--CEE--EEEECSSEEEEEE
T ss_pred             cEEEEEECCC-CccEEeeCC--ccc--eEEEeCCEEEEEE
Confidence            5666666643 333333221  222  3344555555444

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.97  E-value=0.24  Score=46.03  Aligned_cols=247  Identities=10%  Similarity=0.018  Sum_probs=134.1

Q ss_pred             CcEEEEeeCCCeEEEEecCCc--------ceeeeecccccceeEEEEccC----CCeEEEEecCCCCCceEEEEccCce-
Q 036585           27 GIYLVTASDDESIRLYDVTAA--------TCLKTINSKKYGVDLVCFTSH----PTTVIYSSKNGWDESLRLLSLHDNK-   93 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~--------~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~~~d~~i~vwd~~~~~-   93 (304)
                      +.+|+.|+..|.=.+|.+...        +.+.++.. -++|..++....    ...+++++..+.+|.+++..-.-+- 
T Consensus       337 ~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N-~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~  415 (1158)
T 3ei3_A          337 NGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTN-LGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIH  415 (1158)
T ss_dssp             TTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECC-CCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEE
T ss_pred             CCEEEEEEecCCcEEEEEecCCCCccceEEeEeeecC-cCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEE
Confidence            448888988887777776533        23344443 358888877542    2467766665568999887543221 


Q ss_pred             eee--ecccccccEEEEEEc---CCCCEEEEcccCCeEEEEeCCcceeec-----------eE---EEeccceeEecCCC
Q 036585           94 YSR--YFKGHHDRVVLLSLC---SSKDCFISGSLDRTVLLWDQRAEKCQG-----------LL---RVQGRPAAAYDDQG  154 (304)
Q Consensus        94 ~~~--~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------~~---~~~~~~~~~~~~~~  154 (304)
                      ...  .+. ....++.+...   +...+|+.+..+.+ .++.+.......           ++   .......+...+++
T Consensus       416 ~~~~~~l~-gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~  493 (1158)
T 3ei3_A          416 EHASIDLP-GIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSAS  493 (1158)
T ss_dssp             EEEEECCC-SCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETTEEEEECCTTCCSSSCEEEEEEETTTEEEEEESSC
T ss_pred             EEEeecCC-CccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCCcccccccccccCCCCcEEEEEcCCCeEEEEecCE
Confidence            111  233 23456666543   23457777666655 444442111110           01   11112233344444


Q ss_pred             eEEEecCCCeEEEEecCC-CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC----
Q 036585          155 LVFGYEKGPLDIFSVGGD-ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE----  229 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~----  229 (304)
                      ..+...+....+..+... ...|...+.+  +.+++.++ ++.+.++.+..++.......  .....|.|+++.|.    
T Consensus       494 Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~--~l~~evscl~i~~~~~~~  568 (1158)
T 3ei3_A          494 VRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHT--EMEHEVACLDITPLGDSN  568 (1158)
T ss_dssp             EEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEE--ECSSCEEEEECCCCSSST
T ss_pred             EEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeeccc--CCCCceEEEEeecCCCCc
Confidence            443333222222222222 2345555544  34566664 67888888876653332221  24568999999863    


Q ss_pred             --CcEEEEecC-CCcEEEEecCCCceeeeeecc-CCCCceEEeC--CCCcEEEEecCc
Q 036585          230 --GMFVISGSG-DGSVHAWSVRSGKEVASWMSF-DTEPPVIKWA--PGSLMFVTGSSE  281 (304)
Q Consensus       230 --~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~--~~~~~l~s~~~d  281 (304)
                        +++++.|.. |++|+|+++.+.+.+....-. ...+.++.+.  ....+|..|-.|
T Consensus       569 ~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~d  626 (1158)
T 3ei3_A          569 GLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGD  626 (1158)
T ss_dssp             TCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred             ccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCC
Confidence              468999986 999999999877665433211 1233444432  234567777666

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.75  E-value=0.2  Score=41.94  Aligned_cols=91  Identities=11%  Similarity=0.107  Sum_probs=61.0

Q ss_pred             EEEeeCCCeEEEEecCCcceeeeeccc-------------------------ccceeE--EEEc---cCCCeEEEEecCC
Q 036585           30 LVTASDDESIRLYDVTAATCLKTINSK-------------------------KYGVDL--VCFT---SHPTTVIYSSKNG   79 (304)
Q Consensus        30 l~~~~~d~~i~vw~~~~~~~~~~~~~~-------------------------~~~v~~--~~~~---~~~~~l~~~~~~~   79 (304)
                      +.+|+..|.|+|+-+.+++.+..+.-.                         .+..+.  +++.   .||++|+.-... 
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka-  151 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA-  151 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT-
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC-
Confidence            678899999999999998887664210                         111222  2332   267778877653 


Q ss_pred             CCCceEEEEccCceeeeecc-cccccEEEEEEc--CCCCEEEEccc
Q 036585           80 WDESLRLLSLHDNKYSRYFK-GHHDRVVLLSLC--SSKDCFISGSL  122 (304)
Q Consensus        80 ~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~  122 (304)
                       +..|...++...++-+.+. .....+..+.|-  |+..++++++.
T Consensus       152 -n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e  196 (638)
T 3sbq_A          152 -NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAE  196 (638)
T ss_dssp             -TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEEC
T ss_pred             -CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecce
Confidence             7788888888776554443 245577888886  67778888765

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.069  Score=41.94  Aligned_cols=116  Identities=8%  Similarity=0.116  Sum_probs=71.0

Q ss_pred             CeEEEEecCCCCCceEEEEccCceeeeecccc-cccEEEEEEc--C-CCCEEEEc-ccCCeEEEEeCCcceeeceEEEec
Q 036585           70 TTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH-HDRVVLLSLC--S-SKDCFISG-SLDRTVLLWDQRAEKCQGLLRVQG  144 (304)
Q Consensus        70 ~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~  144 (304)
                      ..+++++.   ||.|.-+|..+|+....++.. ..++....-.  + ++..++.. +.||.+..++..++.....+....
T Consensus        11 ~~V~v~t~---dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           11 DILIAADV---EGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEET---TSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CEEEEEeC---CCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            35677777   999999999999988777643 1222221110  1 22333343 689999999988875543332211


Q ss_pred             cceeEecCCCeEEEecCCCeEEEEecCCCCCceE---EEE-e----cCCcEEEEeeCCCeEEEEEcCCCceeEEEEe
Q 036585          145 RPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV---VKF-S----NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV  213 (304)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~-~----~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  213 (304)
                      ..                         ..+++..   ..+ .    ..+..+++|+.+|++.-.|+++|+.+..+..
T Consensus        88 lv-------------------------~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           88 LV-------------------------STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HH-------------------------TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ce-------------------------eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            10                         0001110   000 0    1455789999999999999999999988863

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.46  E-value=0.43  Score=42.20  Aligned_cols=234  Identities=9%  Similarity=0.044  Sum_probs=123.6

Q ss_pred             EEEEeeCCCeEEEEecCCcceeeee-cccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEE
Q 036585           29 YLVTASDDESIRLYDVTAATCLKTI-NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVL  107 (304)
Q Consensus        29 ~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  107 (304)
                      +|-.|..+| +..||-.+.+..... ......|.++....++ .|..++.   + -+..||..+.+...........|.+
T Consensus        34 ~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~---~-Gl~~yd~~~~~f~~~~~~~~~~i~~  107 (758)
T 3ott_A           34 LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTD---N-GILVYNYRADRYEQPETDFPTDVRT  107 (758)
T ss_dssp             CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEET---T-EEEEEETTTTEECCCSCCCCSCEEE
T ss_pred             CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeC---C-CeEEEeCCCCEEECcccCCCceEEE
Confidence            455566777 666774322211111 1123457887776655 5666664   4 4788998876543211112335776


Q ss_pred             EEEcCCCCEEEEcccCCeEEEEeCCcceeeceEE----Eec--cceeEecCCCeEEEecCCCeEEEEecC----------
Q 036585          108 LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR----VQG--RPAAAYDDQGLVFGYEKGPLDIFSVGG----------  171 (304)
Q Consensus       108 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  171 (304)
                      +.. .++ .|..++.+ -+..+|..+.+......    ...  ...+..+.++.+.....+.+..++...          
T Consensus       108 i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~  184 (758)
T 3ott_A          108 MAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGIPLPV  184 (758)
T ss_dssp             EEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTTTEEEEECCCC
T ss_pred             EEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEecCCC
Confidence            654 345 45555555 57888876654321100    001  112334444444333333333333211          


Q ss_pred             C----CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEec
Q 036585          172 D----ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSV  247 (304)
Q Consensus       172 ~----~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~  247 (304)
                      .    ...|.++...+++..|.+|+. +-+..+|..+++......   .....|.++...++|.+.+.. .+ -+.+++.
T Consensus       185 ~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~---l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~~~  258 (758)
T 3ott_A          185 HSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEA---FHNNSIKSLALDGNGDLLAGT-DN-GLYVYHN  258 (758)
T ss_dssp             CTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEE---EEEEEEEEEEECTTCCEEEEE-TT-EEEEECC
T ss_pred             ccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccC---CCCCeEEEEEEcCCCCEEEEe-CC-ceeEEec
Confidence            0    123677777777766666664 468889987765432222   123468888888888765544 44 4888887


Q ss_pred             CCCceeeeee--------ccCCCCceEEeCCCCcEEEEe
Q 036585          248 RSGKEVASWM--------SFDTEPPVIKWAPGSLMFVTG  278 (304)
Q Consensus       248 ~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~s~  278 (304)
                      .+.+.. .+.        -....|.++....+|.+.+..
T Consensus       259 ~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT  296 (758)
T 3ott_A          259 DTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT  296 (758)
T ss_dssp             TTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred             CCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence            665432 221        112347778777777655433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.07  E-value=0.49  Score=39.00  Aligned_cols=105  Identities=8%  Similarity=-0.004  Sum_probs=60.5

Q ss_pred             ceeeEeecccCcEEEEeeCCCeEEEEecCCcce--eeeecc------cccceeEEEEccC---CCeEEEEecC------C
Q 036585           17 SEEILQSMEVGIYLVTASDDESIRLYDVTAATC--LKTINS------KKYGVDLVCFTSH---PTTVIYSSKN------G   79 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~~------~   79 (304)
                      +.-.+.+.++|+++++-...+.|++++..+++.  +..+..      .......|+|+|+   +..|++....      +
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            556788999999777765445788887654543  222221      2356779999996   5555555421      0


Q ss_pred             C----CCceEEEEccCc-------eeee-ecc-cccccEEEEEEcCCCCEEEEcc
Q 036585           80 W----DESLRLLSLHDN-------KYSR-YFK-GHHDRVVLLSLCSSKDCFISGS  121 (304)
Q Consensus        80 ~----d~~i~vwd~~~~-------~~~~-~~~-~~~~~v~~~~~~~~~~~l~~~~  121 (304)
                      .    ...|.-++...+       +.+. .+. ........+.|.|+|.++++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            0    124555554321       1111 121 1123468899999998777643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.02  E-value=0.36  Score=45.35  Aligned_cols=199  Identities=11%  Similarity=0.109  Sum_probs=111.3

Q ss_pred             cEEEEeeCCCeEEEEecCC-cceeeeeccc----ccceeEEEEccCCCeEEEEecC----CCCCceEEEEccCceeeeec
Q 036585           28 IYLVTASDDESIRLYDVTA-ATCLKTINSK----KYGVDLVCFTSHPTTVIYSSKN----GWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~----~~d~~i~vwd~~~~~~~~~~   98 (304)
                      +.|+..+. ..|.-|++.. ..+...+..|    ...|..-..+++.++++..+-.    ...|.+.+|..+.+. -+.+
T Consensus       117 ~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~i  194 (1630)
T 1xi4_A          117 NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPI  194 (1630)
T ss_pred             CeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhh
Confidence            34444433 4699999964 2344444444    3467777888888887765531    236888999887543 3456


Q ss_pred             ccccccEEEEEEc--CCCC-EEEEccc---CCeEEEEeCCcc-eeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585           99 KGHHDRVVLLSLC--SSKD-CFISGSL---DRTVLLWDQRAE-KCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG  171 (304)
Q Consensus        99 ~~~~~~v~~~~~~--~~~~-~l~~~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (304)
                      .+|.+....+...  +... .+..+..   .+.+.|-++... .....+... ..-+.+.|                 +.
T Consensus       195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk-~~~~~~~~-----------------~~  256 (1630)
T 1xi4_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK-AVDVFFPP-----------------EA  256 (1630)
T ss_pred             hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccc-cccccCCc-----------------cc
Confidence            6776655444443  1112 2222221   267888877543 111111100 00001111                 11


Q ss_pred             CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585          172 DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~  249 (304)
                      ...-..++..++.-..+..-+.-|.|++||+.++.++..-+   ....+|...+-+....-++.....|.|.--.+..
T Consensus       257 ~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r---is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR---ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             ccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc---ccCCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence            22334567888888888889999999999999998877655   3444554444443333344444666555555443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.87  E-value=0.83  Score=39.98  Aligned_cols=156  Identities=11%  Similarity=0.081  Sum_probs=82.8

Q ss_pred             cCCCeEEEEecCC-CCCceEEEEccCceeeeec--------ccccccEEEEEEcC-CCCEEEEcccCC------eEEEEe
Q 036585           67 SHPTTVIYSSKNG-WDESLRLLSLHDNKYSRYF--------KGHHDRVVLLSLCS-SKDCFISGSLDR------TVLLWD  130 (304)
Q Consensus        67 ~~~~~l~~~~~~~-~d~~i~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~-~~~~l~~~~~dg------~i~iwd  130 (304)
                      .++..++.|+..+ .-..+.+||..+++....-        ...... .++...+ ++..++.|+.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            4666777776421 1346888898876533221        111111 2233333 677777776532      467788


Q ss_pred             CCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCC--eEEEEEcCCCcee
Q 036585          131 QRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG--HIHVLDSFRGTLL  208 (304)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~  208 (304)
                      +.+.+....-..+                            ....-.+.+.-.+++.++.|+.++  .+.+||..+.+..
T Consensus       475 ~~t~~W~~~~~~p----------------------------~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~  526 (695)
T 2zwa_A          475 MKTREWSMIKSLS----------------------------HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK  526 (695)
T ss_dssp             TTTTEEEECCCCS----------------------------BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE
T ss_pred             CCCCcEEECCCCC----------------------------CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE
Confidence            7765433221100                            001112233323778888887654  6999999887643


Q ss_pred             EEEEe--CCCCCCcceEEEEcCC-CcEEEEecC--C-----CcEEEEecCCCc
Q 036585          209 STYNV--KPVSRNSTLEASFSPE-GMFVISGSG--D-----GSVHAWSVRSGK  251 (304)
Q Consensus       209 ~~~~~--~~~~~~~i~~~~~s~~-~~~l~~~~~--d-----g~i~v~d~~~~~  251 (304)
                      ..-..  .+.......++.+..+ ++.++.|+.  +     +.+.+||+.+.+
T Consensus       527 ~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          527 DVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             ECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            32210  1112222334555655 667777765  2     358899998776

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.46  E-value=1.3  Score=39.24  Aligned_cols=250  Identities=10%  Similarity=0.021  Sum_probs=130.5

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeee-ecc----cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKT-INS----KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG  100 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~  100 (304)
                      +|.+.+ ++.+| +..++..+++.... ...    ....|.++...+++..|..++    ++-+..+|..+++.......
T Consensus       156 ~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt----~~Gl~~~~~~~~~~~~~~~l  229 (758)
T 3ott_A          156 DNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT----EGYLFQYFPSTGQIKQTEAF  229 (758)
T ss_dssp             TCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE----EEEEEEEETTTTEEEEEEEE
T ss_pred             CCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE----CCCCeEEcCCCCeEEeccCC
Confidence            454444 44444 77788766543221 111    112477888777777677776    34577888877653322111


Q ss_pred             ccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEE---------eccceeEecCCCeEEEecCCCeEEEEec-
Q 036585          101 HHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRV---------QGRPAAAYDDQGLVFGYEKGPLDIFSVG-  170 (304)
Q Consensus       101 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  170 (304)
                      ....|.++...+++.+.+. +. +-+.+++..+.+.......         .....+..+.++.+.......+.+.... 
T Consensus       230 ~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~Gl~~~~~~~  307 (758)
T 3ott_A          230 HNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYGISLSRYNS  307 (758)
T ss_dssp             EEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSSEEEECCCC
T ss_pred             CCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCcccccccCC
Confidence            2346888888777765554 44 4577888766543211110         0111233444443332222233322111 


Q ss_pred             -------------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce--eEEEEeC----CCCCCcceEEEEcCCCc
Q 036585          171 -------------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL--LSTYNVK----PVSRNSTLEASFSPEGM  231 (304)
Q Consensus       171 -------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~----~~~~~~i~~~~~s~~~~  231 (304)
                                   .....|.++.-.++|. |.+|+.+| +..++..+++.  ...+...    ......|.++.-.++|+
T Consensus       308 ~~~~~~~~~~~~~~~~~~v~~i~~D~~g~-lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~  385 (758)
T 3ott_A          308 ALQFIPISQITGTGDGNQFYSLFRDSKGF-YWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ  385 (758)
T ss_dssp             -CEEEEHHHHSCSCCCCBEEEEEECTTCC-EEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSC
T ss_pred             ceeEEecccCCCCCCCceEEEEEEcCCCC-EEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCC
Confidence                         0123567777777776 44555554 66676554321  1222210    01234578888888876


Q ss_pred             EEEEecCCCcEEEEecCCCceeeee-ec-----cCCCCceEEeCCCCcEEEEecC-ceEEecc
Q 036585          232 FVISGSGDGSVHAWSVRSGKEVASW-MS-----FDTEPPVIKWAPGSLMFVTGSS-ELSFWIP  287 (304)
Q Consensus       232 ~l~~~~~dg~i~v~d~~~~~~~~~~-~~-----~~~~i~~~~~~~~~~~l~s~~~-d~~iw~~  287 (304)
                      +.+ |+. +-|..||.++++...-. ..     ....|.++.-.+++.+.+.... .+..++.
T Consensus       386 lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~  446 (758)
T 3ott_A          386 LWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDK  446 (758)
T ss_dssp             EEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEH
T ss_pred             EEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEcc
Confidence            544 443 46999998776542211 11     1235778887777776554433 3666654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.55  E-value=1.7  Score=35.93  Aligned_cols=107  Identities=7%  Similarity=-0.035  Sum_probs=59.2

Q ss_pred             ceeeEeecccCc-EEEEeeCCCeEEEEecCCcc---eeeeec---------ccccceeEEEEccC----CCeEEEEecCC
Q 036585           17 SEEILQSMEVGI-YLVTASDDESIRLYDVTAAT---CLKTIN---------SKKYGVDLVCFTSH----PTTVIYSSKNG   79 (304)
Q Consensus        17 ~~~~i~~~~~~~-~l~~~~~d~~i~vw~~~~~~---~~~~~~---------~~~~~v~~~~~~~~----~~~l~~~~~~~   79 (304)
                      ++-.+.+.|+|. .|+++...|.|++++.....   .+..+.         ........|+|+|+    +...++-+...
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            556788999986 56666788999999754221   222221         11356788999996    33333322210


Q ss_pred             CC----------CceEEEEccCc----------eeeeecc--cccccEEEEEEcCCCCEEEEcccCC
Q 036585           80 WD----------ESLRLLSLHDN----------KYSRYFK--GHHDRVVLLSLCSSKDCFISGSLDR  124 (304)
Q Consensus        80 ~d----------~~i~vwd~~~~----------~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg  124 (304)
                       +          ..|.-|.+..+          +.+..+.  ........|.|.|||.+.++.+..+
T Consensus        95 -~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 -ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             -CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             -CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence             1          13444555321          1222221  1122457899999998777655433

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.27  E-value=1  Score=37.17  Aligned_cols=107  Identities=14%  Similarity=0.198  Sum_probs=59.1

Q ss_pred             CCceEEEEecCCc-EEEEeeCCCeEEEEEcCCCc---eeEEEE--eCC----CCCCcceEEEEcCC----CcEEEEec--
Q 036585          174 SDANVVKFSNDGR-LMLLTTMEGHIHVLDSFRGT---LLSTYN--VKP----VSRNSTLEASFSPE----GMFVISGS--  237 (304)
Q Consensus       174 ~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~---~~~~~~--~~~----~~~~~i~~~~~s~~----~~~l~~~~--  237 (304)
                      .....|+|.|+|. .|+++...|.|++++.....   .+..+.  ...    ........++|+|+    +.+.++-+  
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3557799999996 56677789999999753221   111111  000    11456788999996    33333222  


Q ss_pred             CC----------CcEEEEecCCC----------ceeeeee--ccCCCCceEEeCCCCcEEEEecC
Q 036585          238 GD----------GSVHAWSVRSG----------KEVASWM--SFDTEPPVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       238 ~d----------g~i~v~d~~~~----------~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~  280 (304)
                      .+          ..|.-|.+..+          +.+..+.  .....-..|+|.|||.+.++.++
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            11          13444555321          1222222  11223578999999987666543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.26  E-value=1.4  Score=33.68  Aligned_cols=104  Identities=10%  Similarity=0.018  Sum_probs=51.7

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      +.....-....+.-. ||.|..|-....-.+-.-......|..++....  +.+.. .   ||.|+.|-....-.+..-.
T Consensus        26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~--hs~~l-~---~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY--HSLAL-K---DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS--EEEEE-E---TTEEEEEECCTTSTTCCCG
T ss_pred             CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC--EEEEE-E---CCEEEEeeCCCCCCCCCCc
Confidence            333333333333335 899999976542221111111235666665332  22223 3   7888888655422111111


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCc
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRA  133 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  133 (304)
                      .-...|..++...+-  .+.-. ||.|+.|-...
T Consensus        99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~  129 (282)
T 3qhy_B           99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDS  129 (282)
T ss_dssp             GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCT
T ss_pred             ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCC
Confidence            113467777765443  33334 89999997544

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=91.98  E-value=3.2  Score=31.52  Aligned_cols=162  Identities=10%  Similarity=0.025  Sum_probs=88.9

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCceEEE---EccCceeeeecccccccEEEEEEcC-CCCEEEEcccCCeEEEEeCCc
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLL---SLHDNKYSRYFKGHHDRVVLLSLCS-SKDCFISGSLDRTVLLWDQRA  133 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw---d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~  133 (304)
                      +.+..+........|+..+.   .|.++--   ++........+. ....|..+.... +..+++..+.+|.++...+..
T Consensus        24 D~~~~~~~~~t~~~ll~fT~---~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~   99 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSN---RGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAE   99 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEET---TSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGG
T ss_pred             CeEEEEEEECCCCEEEEEcC---CCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHH
Confidence            34555555555556666665   7766643   333222111133 345666664421 467899999999999988765


Q ss_pred             ceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC-------c
Q 036585          134 EKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG-------T  206 (304)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-------~  206 (304)
                      .. ...   .+...+.+.                    ....+..+........++..+..|.+..+....-       +
T Consensus       100 ~~-~~~---~G~~~i~lk--------------------egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~  155 (276)
T 3no0_A          100 FE-YKA---QGMPIIKLT--------------------EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGAR  155 (276)
T ss_dssp             TT-TCS---TTEECSCCC--------------------TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred             hh-hhc---CCeEEEecC--------------------CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCC
Confidence            43 110   111111111                    1123333444445557888888898888875321       1


Q ss_pred             eeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC
Q 036585          207 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS  249 (304)
Q Consensus       207 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~  249 (304)
                      -...+..  .....+..+...+++.+++..+..|.++...+..
T Consensus       156 Gv~~i~L--~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e  196 (276)
T 3no0_A          156 GVQGIKL--EKNDETSGLRIWNGEPYLLVITAKGRVKKISHEE  196 (276)
T ss_dssp             CEECCCC--CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred             CEEEEcc--CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence            1111111  1335566655555666888888999999888754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.81  E-value=1.1  Score=40.91  Aligned_cols=38  Identities=13%  Similarity=0.085  Sum_probs=32.3

Q ss_pred             CcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585          219 NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      ..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            35667778888899999999999999999999887664

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=91.52  E-value=4.5  Score=32.33  Aligned_cols=183  Identities=7%  Similarity=0.062  Sum_probs=100.6

Q ss_pred             ceEEEEccCc--eeeeeccc------ccccEEEEEEc---CC----CCEEEEc-ccCCeEEEEeCCcceeeceEEEeccc
Q 036585           83 SLRLLSLHDN--KYSRYFKG------HHDRVVLLSLC---SS----KDCFISG-SLDRTVLLWDQRAEKCQGLLRVQGRP  146 (304)
Q Consensus        83 ~i~vwd~~~~--~~~~~~~~------~~~~v~~~~~~---~~----~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~  146 (304)
                      .|.+||+.++  +.++.+.-      ....+..+.+.   |+    +.+++.+ +....|.++|+.+++..+....    
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~----  199 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHP----  199 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECG----
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccC----
Confidence            5788999998  87766542      23457777777   22    2343333 3467899999999887765521    


Q ss_pred             eeEecCC-CeEEEecCCCeEEEEecCCCCCceEEEEecC----CcEEEEeeCCC-eEEEEE---cCCCc---eeEEEEeC
Q 036585          147 AAAYDDQ-GLVFGYEKGPLDIFSVGGDISDANVVKFSND----GRLMLLTTMEG-HIHVLD---SFRGT---LLSTYNVK  214 (304)
Q Consensus       147 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg-~i~~~d---~~~~~---~~~~~~~~  214 (304)
                      .  +.++ ...+......+. +     ...+..|+++|+    ++.|......+ .++-..   +++..   .+..+-. 
T Consensus       200 ~--~~pd~~~~~~i~G~~~~-~-----~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~-  270 (381)
T 3q6k_A          200 T--FKAERPTKFDYGGKEYE-F-----KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGN-  270 (381)
T ss_dssp             G--GSCCSCEEEEETTEEEE-E-----CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEE-
T ss_pred             C--CccccCcceEECCEEeE-e-----ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeee-
Confidence            1  1111 111111111111 1     246888999998    77777776655 333332   22222   1222221 


Q ss_pred             CCCCCcceEEEEc-CCCcEEEEecCCCcEEEEecCC-C---ceeeeeec--cCCCCceEEeCCCCcEEEEe
Q 036585          215 PVSRNSTLEASFS-PEGMFVISGSGDGSVHAWSVRS-G---KEVASWMS--FDTEPPVIKWAPGSLMFVTG  278 (304)
Q Consensus       215 ~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~v~d~~~-~---~~~~~~~~--~~~~i~~~~~~~~~~~l~s~  278 (304)
                      .+....-..++++ .+|.++++--..+.|..|+..+ .   +....+..  .-..+..+.+.++|.+.+..
T Consensus       271 kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          271 RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            1112334456776 6788777777888999999865 1   12233321  11235667776676544443

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=91.21  E-value=4.8  Score=32.14  Aligned_cols=177  Identities=7%  Similarity=0.023  Sum_probs=92.3

Q ss_pred             eEEEEecCCc--ceeeeeccc------ccceeEEEEc---cC---CCeEEEEecCCCCCceEEEEccCceeeeecccc--
Q 036585           38 SIRLYDVTAA--TCLKTINSK------KYGVDLVCFT---SH---PTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH--  101 (304)
Q Consensus        38 ~i~vw~~~~~--~~~~~~~~~------~~~v~~~~~~---~~---~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~--  101 (304)
                      .|.+||+.++  +.++++.-.      ...+..+.+.   |.   +...+..+..+ ...|.|+|+.+++.-+.+..+  
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~-~~gLIVydl~~~~swRv~~~~~~  202 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFL-RGALFIYDHKKQDSWNVTHPTFK  202 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETT-TTEEEEEETTTTEEEEEECGGGS
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCC-CCcEEEEECCCCcEEEEccCCCc
Confidence            5889999999  888877643      2457778877   22   13444444322 788999999988755443110  


Q ss_pred             ----------------cccEEEEEEcCC----CCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecC
Q 036585          102 ----------------HDRVVLLSLCSS----KDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEK  161 (304)
Q Consensus       102 ----------------~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (304)
                                      ...+..++++|+    ++.|+-....+ -++|.+.+......      .             ..
T Consensus       203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~------~-------------~~  262 (381)
T 3q6k_A          203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQK------G-------------GK  262 (381)
T ss_dssp             CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSST------T-------------CC
T ss_pred             cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCc------c-------------hh
Confidence                            134566667665    44444433322 12222221110000      0             01


Q ss_pred             CCeEEEEecCCCCCceEEEEe-cCCcEEEEeeCCCeEEEEEcCC-C---ceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585          162 GPLDIFSVGGDISDANVVKFS-NDGRLMLLTTMEGHIHVLDSFR-G---TLLSTYNVKPVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       162 ~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~~d~~~-~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                      ..++.+--.+....-..+++. .+|.++++--....|..|+..+ .   +....+...+ .-.....+.+.++|.+.+..
T Consensus       263 ~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          263 LNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             CCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEE
T ss_pred             hceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEE
Confidence            111111111112233456775 6788777777888999999865 1   2223333222 33345666666665544433

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.98  E-value=0.68  Score=43.12  Aligned_cols=37  Identities=11%  Similarity=0.053  Sum_probs=31.0

Q ss_pred             cceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585          220 STLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       220 ~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            4455667788899999999999999999999887664

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=90.96  E-value=4.7  Score=31.50  Aligned_cols=194  Identities=9%  Similarity=0.043  Sum_probs=105.7

Q ss_pred             CcEEEEeeCCCeEEEEecCCcc---------eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc---cC---
Q 036585           27 GIYLVTASDDESIRLYDVTAAT---------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL---HD---   91 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~---~~---   91 (304)
                      ...+++.+.+|.|+--.+.+-+         .-..++. .+.+..+........++..+.   .|.++-...   ..   
T Consensus         3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke-~D~~~~~~~~~t~d~ll~fT~---~Gr~y~~~~~~lp~~~r   78 (327)
T 3uc1_A            3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQ-DDIVAHFFVCSTHDLILFFTT---QGRVYRAKAYDLPEASR   78 (327)
T ss_dssp             CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCG-GGCEEEEEEEETTSEEEEEET---TSEEEEEEGGGSCBCCS
T ss_pred             ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCC-CCEEEEEEEeCCCCEEEEEeC---CCeEEEEEHHHCcCCCc
Confidence            3567888889988876543211         1112222 234555555555556666665   676655443   22   


Q ss_pred             ---ceeeeecc--cccccEEEEEEcC---CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCC
Q 036585           92 ---NKYSRYFK--GHHDRVVLLSLCS---SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGP  163 (304)
Q Consensus        92 ---~~~~~~~~--~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (304)
                         |.++..+-  .....|.++...+   +..+++..+.+|.++.-.+........   .+...+.+.            
T Consensus        79 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r---~G~~~i~lk------------  143 (327)
T 3uc1_A           79 TARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS---GGIVAVNLR------------  143 (327)
T ss_dssp             SSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS---SCEESCBCC------------
T ss_pred             cCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc---CceEEEEEC------------
Confidence               22221111  1234555554433   467999999999999988765443221   111111111            


Q ss_pred             eEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcC--CCce-------eEEEEeCCCCCCcceEEEEcCCCcEEE
Q 036585          164 LDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSF--RGTL-------LSTYNVKPVSRNSTLEASFSPEGMFVI  234 (304)
Q Consensus       164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~--~~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~  234 (304)
                              ....+..+........++..+..|.+..+...  .-..       ...+..  .....|.++...+++.+++
T Consensus       144 --------e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L--~~~d~Vv~~~~~~~~~~ll  213 (327)
T 3uc1_A          144 --------DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF--NIDDRLLSLNVVREGTYLL  213 (327)
T ss_dssp             --------TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC--CTTCCEEEEEECCTTCEEE
T ss_pred             --------CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC--CCCCEEEEEEEECCCCEEE
Confidence                    11233334444455667778888888887765  2111       111111  1345566666656667888


Q ss_pred             EecCCCcEEEEecCC
Q 036585          235 SGSGDGSVHAWSVRS  249 (304)
Q Consensus       235 ~~~~dg~i~v~d~~~  249 (304)
                      ..+..|.++.-.+..
T Consensus       214 ~~T~~G~~Krt~l~e  228 (327)
T 3uc1_A          214 VATSGGYAKRTAIEE  228 (327)
T ss_dssp             EEETTSEEEEEEGGG
T ss_pred             EEeCCCcEEEEEHHH
Confidence            888999998887654

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=90.86  E-value=4.8  Score=31.44  Aligned_cols=104  Identities=12%  Similarity=0.047  Sum_probs=67.1

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcc-------eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc--Cc----
Q 036585           26 VGIYLVTASDDESIRLYDVTAAT-------CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH--DN----   92 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~--~~----   92 (304)
                      +..++++.+.+|.++.-.+....       ....+... +.+..+........++..+.   .|.+..+...  .-    
T Consensus       108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~---~G~~~rf~~~~~eip~~g  183 (327)
T 3uc1_A          108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSA---NGQSIRFSATDEALRPMG  183 (327)
T ss_dssp             SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEET---TSEEEEEECCTTTSCCCC
T ss_pred             CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEEEEC---CCeEEEEECcccccCcCC
Confidence            46799999999999988765422       22234333 34555555555667777777   8888888776  21    


Q ss_pred             -----eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcc
Q 036585           93 -----KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAE  134 (304)
Q Consensus        93 -----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  134 (304)
                           .....+. ..+.|.++...+++.+++..+..|.++.-.+...
T Consensus       184 r~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~  229 (327)
T 3uc1_A          184 RATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEY  229 (327)
T ss_dssp             TTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred             cCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHc
Confidence                 1111222 3456777766666678888889999888776543

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=89.57  E-value=10  Score=33.29  Aligned_cols=232  Identities=11%  Similarity=0.058  Sum_probs=114.1

Q ss_pred             ecccCcEEEEe-eCCC----eEEEEecCCcceee-eeccccc--------ceeEEEEccCCCeEEEEec--------CCC
Q 036585           23 SMEVGIYLVTA-SDDE----SIRLYDVTAATCLK-TINSKKY--------GVDLVCFTSHPTTVIYSSK--------NGW   80 (304)
Q Consensus        23 ~~~~~~~l~~~-~~d~----~i~vw~~~~~~~~~-~~~~~~~--------~v~~~~~~~~~~~l~~~~~--------~~~   80 (304)
                      +++++++++.+ |..|    .++++|+.+++.+. .+. ...        ....++|. +...++.+..        .++
T Consensus       137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~  214 (711)
T 4hvt_A          137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLY  214 (711)
T ss_dssp             CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSS
T ss_pred             cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCC
Confidence            77888876654 3333    59999999988763 222 111        12345886 4445554421        123


Q ss_pred             CCceEEEEccCce--eeeecccccccE-EEEEEcCCCC-----EEEEcc---cCCeEEEEeCCccee-eceEEEecccee
Q 036585           81 DESLRLLSLHDNK--YSRYFKGHHDRV-VLLSLCSSKD-----CFISGS---LDRTVLLWDQRAEKC-QGLLRVQGRPAA  148 (304)
Q Consensus        81 d~~i~vwd~~~~~--~~~~~~~~~~~v-~~~~~~~~~~-----~l~~~~---~dg~i~iwd~~~~~~-~~~~~~~~~~~~  148 (304)
                      ...|+.|.+-+..  -...+.+....+ .....+++++     .+++.+   ....+.+.|...... ...+..+     
T Consensus       215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----  289 (711)
T 4hvt_A          215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMP-----  289 (711)
T ss_dssp             BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSC-----
T ss_pred             CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecC-----
Confidence            4678888776542  122333222222 3344455555     233322   123445555432111 0111000     


Q ss_pred             EecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEe----------eCCCeEEEEEcCCCc-------eeEEE
Q 036585          149 AYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLT----------TMEGHIHVLDSFRGT-------LLSTY  211 (304)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----------~~dg~i~~~d~~~~~-------~~~~~  211 (304)
                                               .. ..+..+.++.+++..          ...+.|...|+.++.       ....+
T Consensus       290 -------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  343 (711)
T 4hvt_A          290 -------------------------SD-ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKIL  343 (711)
T ss_dssp             -------------------------TT-CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEE
T ss_pred             -------------------------Cc-ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEE
Confidence                                     00 112233445444422          246778889887642       12222


Q ss_pred             EeCCCCCCcceEEEEcCCCcEEEEecCCC--cEEEEecCCCc-eeee-eecc-CCCCceEEeCCCCc-EEEEecCc---e
Q 036585          212 NVKPVSRNSTLEASFSPEGMFVISGSGDG--SVHAWSVRSGK-EVAS-WMSF-DTEPPVIKWAPGSL-MFVTGSSE---L  282 (304)
Q Consensus       212 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~v~d~~~~~-~~~~-~~~~-~~~i~~~~~~~~~~-~l~s~~~d---~  282 (304)
                      - .+.....+..+.+..+ .++++...++  .|+++|+.+++ .... +... .+.+.....++++. ++++.+..   -
T Consensus       344 ~-~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~  421 (711)
T 4hvt_A          344 F-TPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPP  421 (711)
T ss_dssp             E-CCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCC
T ss_pred             E-CCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCC
Confidence            2 2234556778888876 4666666665  47788876664 2233 2211 24566666667664 44444333   5


Q ss_pred             EEeccCC
Q 036585          283 SFWIPDL  289 (304)
Q Consensus       283 ~iw~~~~  289 (304)
                      .+|.++.
T Consensus       422 ~~~~~d~  428 (711)
T 4hvt_A          422 TIYLWVK  428 (711)
T ss_dssp             EEEEECT
T ss_pred             EEEEEeC
Confidence            5555543

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=87.34  E-value=8.7  Score=29.74  Aligned_cols=196  Identities=7%  Similarity=0.064  Sum_probs=108.1

Q ss_pred             cccCcEEEEeeCCCeEEEEecCCcce-------e--eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC---
Q 036585           24 MEVGIYLVTASDDESIRLYDVTAATC-------L--KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD---   91 (304)
Q Consensus        24 ~~~~~~l~~~~~d~~i~vw~~~~~~~-------~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~---   91 (304)
                      .++..++++.+.+|.|+--.+..-+.       +  ..+... +.+..+........++..+.   .|.++-+....   
T Consensus         5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~---~G~~~~~~~~~ip~   80 (312)
T 1suu_A            5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISN---EGKLYLINAYEIKD   80 (312)
T ss_dssp             ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEET---TSEEEEEEGGGSCC
T ss_pred             cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEEC---CCeEEEEEHHHCCC
Confidence            35677899999999999876653221       1  122222 34445555555666777776   78777665532   


Q ss_pred             ------ceee---eecccccccEEEEEEcC---CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEe
Q 036585           92 ------NKYS---RYFKGHHDRVVLLSLCS---SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGY  159 (304)
Q Consensus        92 ------~~~~---~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (304)
                            |.++   ..+. ..+.|.++...+   +..+++..+..|.++...+.......   ..+...+           
T Consensus        81 ~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r---~~G~~~i-----------  145 (312)
T 1suu_A           81 SSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK---SRGVIVI-----------  145 (312)
T ss_dssp             -------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-------CEECB-----------
T ss_pred             CCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC---CCcEEEE-----------
Confidence                  1111   1122 223455554332   45678888999999988876543221   1111111           


Q ss_pred             cCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCC----c---eeEEEEeCCCCCCcceEEEEcCCCcE
Q 036585          160 EKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRG----T---LLSTYNVKPVSRNSTLEASFSPEGMF  232 (304)
Q Consensus       160 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~---~~~~~~~~~~~~~~i~~~~~s~~~~~  232 (304)
                              .+.. ...+..+.....+..++..+.+|.+..+....-    +   -...+..  .....+..+..-+++..
T Consensus       146 --------~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L--~~~d~vv~~~~v~~~~~  214 (312)
T 1suu_A          146 --------KLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL--KEGDLFVKVLSVKENPY  214 (312)
T ss_dssp             --------CCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC--CTTCCEEEEEECTTCSE
T ss_pred             --------ecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe--CCCCEEEEEEEECCCCe
Confidence                    1111 233444444444567888899999988886431    1   1111221  12445566655555667


Q ss_pred             EEEecCCCcEEEEecCC
Q 036585          233 VISGSGDGSVHAWSVRS  249 (304)
Q Consensus       233 l~~~~~dg~i~v~d~~~  249 (304)
                      +++.+..|..+..++..
T Consensus       215 l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          215 LLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             EEEEETTSEEEEEEGGG
T ss_pred             EEEEECCCceEEEEHHH
Confidence            88888899988888754

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=85.61  E-value=4.3  Score=34.65  Aligned_cols=59  Identities=22%  Similarity=0.282  Sum_probs=41.9

Q ss_pred             ceEEEEecCCcEEEEeeCC------------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585          176 ANVVKFSNDGRLMLLTTME------------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                      .-.|+|+|.|.++++-..+            ..+.+.+..+++...-+..  .....++.++|+||++.|+..
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~--P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--PIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC--CTTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC--CCCccCcCeeECCCCCEEEEE
Confidence            3568999999866553321            3466777777776665553  256789999999999988765

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.02  E-value=9.7  Score=34.77  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=31.7

Q ss_pred             ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec
Q 036585           59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      .+.+++..++..++++.+.   |+++|+|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~---D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSL---DYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEET---TCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEEC---CCEEEEEECCCCCeEeee
Confidence            4677788888889999998   999999999999877653

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=84.89  E-value=4.5  Score=34.27  Aligned_cols=61  Identities=16%  Similarity=0.171  Sum_probs=42.4

Q ss_pred             cceEEEEcCCCcEEEEecC------------CCcEEEEecCCCceeeeeecc-CCCCceEEeCCCCcEEEEecC
Q 036585          220 STLEASFSPEGMFVISGSG------------DGSVHAWSVRSGKEVASWMSF-DTEPPVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       220 ~i~~~~~s~~~~~l~~~~~------------dg~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~  280 (304)
                      ....|.|+++|.+.++...            .+.|..++..+++....+... ...++.++|+||++.|+.+-.
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ  550 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence            4557999999987774322            225777777777765555433 356899999999998887643

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=84.02  E-value=15  Score=29.32  Aligned_cols=108  Identities=12%  Similarity=0.048  Sum_probs=65.3

Q ss_pred             ecccCcEEEEeeCCCeEEEEecCC---------cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC--
Q 036585           23 SMEVGIYLVTASDDESIRLYDVTA---------ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--   91 (304)
Q Consensus        23 ~~~~~~~l~~~~~d~~i~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~--   91 (304)
                      ..++..++++.+.+|.|+--.+.+         +.....++. ...+..+........++..+.   .|.++-+....  
T Consensus         3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~---~G~~~~~~~~eip   78 (370)
T 3l6v_A            3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTS---SGKVFWLPVHQLP   78 (370)
T ss_dssp             CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEET---TSEEEEEEGGGSC
T ss_pred             cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeC---CCeEEEEEHHHCc
Confidence            457788999999999999865432         122223333 335555555556666776666   77766555421  


Q ss_pred             -------ceeeee---cccccccEEEEEEcC---CCCEEEEcccCCeEEEEeCCcce
Q 036585           92 -------NKYSRY---FKGHHDRVVLLSLCS---SKDCFISGSLDRTVLLWDQRAEK  135 (304)
Q Consensus        92 -------~~~~~~---~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~  135 (304)
                             |.++..   +. ....|.++...+   ++.+++.++..|.++...+....
T Consensus        79 ~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~  134 (370)
T 3l6v_A           79 EAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFA  134 (370)
T ss_dssp             BCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGC
T ss_pred             CCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhh
Confidence                   222221   22 234565554432   45689999999999998876543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=83.99  E-value=4.6  Score=34.44  Aligned_cols=57  Identities=18%  Similarity=0.194  Sum_probs=40.5

Q ss_pred             eEEEEcCCCcEEEEecCC------------CcEEEEecCCCceeeeeecc-CCCCceEEeCCCCcEEEEe
Q 036585          222 LEASFSPEGMFVISGSGD------------GSVHAWSVRSGKEVASWMSF-DTEPPVIKWAPGSLMFVTG  278 (304)
Q Consensus       222 ~~~~~s~~~~~l~~~~~d------------g~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~  278 (304)
                      -.|+|+|.|+++++-..+            +.+.+.+..+++...-+.++ ...++.++|+||++.|+..
T Consensus       479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            458999999977665432            24566666677765555443 4679999999999888765

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=83.22  E-value=8.3  Score=32.71  Aligned_cols=61  Identities=21%  Similarity=0.271  Sum_probs=42.6

Q ss_pred             CCceEEEEecCCcEEEEeeC------------CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585          174 SDANVVKFSNDGRLMLLTTM------------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~------------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                      .....|.|+++|.+.++...            ...+..++..+++....+..  .....++.++|+||++.|+++
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~--P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG--PIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC--CTTCEEEEEEECTTSSEEEEE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC--CCCccccCCEECCCCCEEEEE
Confidence            34567999999986663221            22677778777876555542  134678999999999988876

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=83.00  E-value=14  Score=28.45  Aligned_cols=193  Identities=9%  Similarity=0.043  Sum_probs=101.9

Q ss_pred             cCcEEEEeeCCCeEEEEecCCccee---------eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc---C--
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCL---------KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH---D--   91 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~---~--   91 (304)
                      +..++++.+.+|.|+--.+.+-+..         ..++.+ +.+..+........++..+.   .|.++-+...   .  
T Consensus         2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~---~G~~~~~~~~elp~~~   77 (307)
T 1zi0_A            2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSS---RGRVYSMKVYQLPEAT   77 (307)
T ss_dssp             CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEET---TSEEEEEEGGGSCCCC
T ss_pred             CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEEC---CCEEEEEEhhHCcCCC
Confidence            4567889999999987766532211         112222 24444444445556666666   7776655542   1  


Q ss_pred             ----ceeee---ecccccccEEEEEEc---CCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecC
Q 036585           92 ----NKYSR---YFKGHHDRVVLLSLC---SSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEK  161 (304)
Q Consensus        92 ----~~~~~---~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (304)
                          |.++.   .+. ....|.++...   +++.+++..+.+|.++--.+........   .+...+             
T Consensus        78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r---~G~~~i-------------  140 (307)
T 1zi0_A           78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT---AGKVAI-------------  140 (307)
T ss_dssp             SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT---TCEESS-------------
T ss_pred             CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc---CCeEEE-------------
Confidence                22222   122 23456555432   3456788889999999887654322211   000000             


Q ss_pred             CCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce-------eEEEEeCCCCCCcceEEEEcCCCcEEE
Q 036585          162 GPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-------LSTYNVKPVSRNSTLEASFSPEGMFVI  234 (304)
Q Consensus       162 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~  234 (304)
                            .+..+ ..+..+........++..+.+|.+..++...-..       ..-+..  .....|.++...+++..++
T Consensus       141 ------~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L--~~~d~Vv~~~~~~~~~~ll  211 (307)
T 1zi0_A          141 ------KLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL--GEGDKVVSLIVPRGDGAIL  211 (307)
T ss_dssp             ------CCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEEEECCCSSCEEE
T ss_pred             ------EECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe--CCCCEEEEEEEecCCCEEE
Confidence                  11111 3333343434455677788888888887642111       111111  1345566665545556788


Q ss_pred             EecCCCcEEEEecC
Q 036585          235 SGSGDGSVHAWSVR  248 (304)
Q Consensus       235 ~~~~dg~i~v~d~~  248 (304)
                      +.+..|.++-.++.
T Consensus       212 ~~T~~G~~Kr~~~~  225 (307)
T 1zi0_A          212 TATQNGYGKRTAVA  225 (307)
T ss_dssp             EEETTSEEEEECGG
T ss_pred             EEEcCCceEEEEHH
Confidence            88889998888774

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=82.09  E-value=16  Score=28.42  Aligned_cols=198  Identities=9%  Similarity=0.061  Sum_probs=106.1

Q ss_pred             cccCcEEEEeeCCCeEEEEecCCc----ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC--------
Q 036585           24 MEVGIYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD--------   91 (304)
Q Consensus        24 ~~~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~--------   91 (304)
                      .++..++++.+.+|.|+--.+.+-    .....++.. +.+..+........++..+.   .|.++-+....        
T Consensus         2 I~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~---~Gr~~~~~~~elp~~~r~a   77 (323)
T 1wp5_A            2 VASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTN---KGNYLYCPVHELPDIRWKD   77 (323)
T ss_dssp             CSCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEET---TSEEEEEEGGGSCBCCTTS
T ss_pred             ccCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEEC---CCEEEEEEHHHCcCCCCCC
Confidence            356678899999999987765421    111223333 34444545555566666666   77766555421        


Q ss_pred             -ceeeeec-c-cccccEEEEEEcC---CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           92 -NKYSRYF-K-GHHDRVVLLSLCS---SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        92 -~~~~~~~-~-~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                       |.++..+ . .....|.++...+   ++.+++..+.+|.++.-.+........  ..+...+.                
T Consensus        78 ~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r--~~G~~ai~----------------  139 (323)
T 1wp5_A           78 LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY--SKPLTGIN----------------  139 (323)
T ss_dssp             CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC--SSCEECSC----------------
T ss_pred             CCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc--cCceEEEE----------------
Confidence             2222221 1 1223455543333   256788899999999988764433221  00100111                


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCc-------eeEEEEeCCCCCCcceEEEEcCCCc-EEEEec
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT-------LLSTYNVKPVSRNSTLEASFSPEGM-FVISGS  237 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-------~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~  237 (304)
                         +... ..+..+........++..+.+|.+..+....-.       -..-+..  .....|.++..-+++. .+++.+
T Consensus       140 ---l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L--~~~d~Vv~~~~~~~~~~~ll~vt  213 (323)
T 1wp5_A          140 ---LKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNL--KEGDYIVSGQLITSKDESIVVAT  213 (323)
T ss_dssp             ---CCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCC--CTTCCEEEEEEECCTTCEEEEEE
T ss_pred             ---eCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEe--CCCCEEEEEEEEcCCCcEEEEEE
Confidence               1111 233334444445567788888988888764311       1111111  1334455554434444 677788


Q ss_pred             CCCcEEEEecCC
Q 036585          238 GDGSVHAWSVRS  249 (304)
Q Consensus       238 ~dg~i~v~d~~~  249 (304)
                      ..|..+..++..
T Consensus       214 ~~G~gKr~~~~e  225 (323)
T 1wp5_A          214 QRGAVKKMKLTE  225 (323)
T ss_dssp             TTSEEEEEEGGG
T ss_pred             CCCceEEEEHHH
Confidence            888888877754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	304
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.003
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.002
d1xfda1	465	b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-lik	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.4 bits (194), Expect = 1e-17
 Identities = 47/300 (15%), Positives = 98/300 (32%), Gaps = 53/300 (17%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------- 78
              +V+AS+D +I+++D       +T+      V  + F      +   S +        
Sbjct: 29  FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 88

Query: 79  -------------------------------GWDESLRLLSLHDNKYSRYFKGHHDRVVL 107
                                            D+++++  +      + F GH + V +
Sbjct: 89  QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 148

Query: 108 LSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF 167
           +          S S D+TV +W    ++C+  LR           + + +  E     I 
Sbjct: 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV-----VECISWAPESSYSSIS 203

Query: 168 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS 227
              G        K    G  +L  + +  I + D   G  L T        N      F 
Sbjct: 204 EATGS----ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFH 256

Query: 228 PEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFW 285
             G F++S + D ++  W  ++ + + +  + +     + +   +   VTGS +  +  W
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (155), Expect = 2e-12
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 12  VSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTT 71
           +S     E  +S + G +L++ S D++I+++DV+   CL T+      V  V F S    
Sbjct: 202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 261

Query: 72  VIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD 130
           ++  +    D++LR+    + +  +    H   V  L    +    ++GS+D+TV +W+
Sbjct: 262 ILSCA---DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 9e-07
 Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 16/195 (8%)

Query: 98  FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA-------- 149
             GH   V  +         +S S D T+ +WD      +  L+                
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72

Query: 150 -----YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR 204
                  D  +     +G   I ++ G   + + V    +G  ++  + +  I + +   
Sbjct: 73  LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132

Query: 205 GTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPP 264
           G  + T+               + +G  + S S D +V  W V + +  A          
Sbjct: 133 GYCVKTFTGHREWVRMV---RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 265 VIKWAPGSLMFVTGS 279
            I WAP S       
Sbjct: 190 CISWAPESSYSSISE 204

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.5 bits (158), Expect = 9e-13
 Identities = 45/275 (16%), Positives = 79/275 (28%), Gaps = 18/275 (6%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
              LV+AS D  + ++D      +  I  +   V    +      V     +       L
Sbjct: 67  SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126

Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
            +   N         H   +        +  ++ S D T  LWD    +           
Sbjct: 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 186

Query: 147 --------------AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT 192
                         + A D    ++   +G     +  G  SD N + F  +G      +
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAFATGS 245

Query: 193 MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE 252
            +    + D      L TY+   +    T   SFS  G  +++G  D + + W       
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGIT-SVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

Query: 253 VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFW 285
                  D     +      +   TGS +  L  W
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.2 bits (152), Expect = 5e-12
 Identities = 34/167 (20%), Positives = 58/167 (34%), Gaps = 30/167 (17%)

Query: 80  WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGL 139
            D S +L  + +    + F GH   +  +    + + F +GS D T  L+D RA++    
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-- 261

Query: 140 LRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHV 199
                                      +S    I     V FS  GRL+L    + + +V
Sbjct: 262 -------------------------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

Query: 200 LDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWS 246
            D+ +              N       + +GM V +GS D  +  W+
Sbjct: 297 WDALKADRAGVL---AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 2e-09
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 3/105 (2%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLR 85
           G    T SDD + RL+D+ A   L T +       +   +   +  ++ +     D +  
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG--YDDFNCN 295

Query: 86  LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD 130
           +        +    GH +RV  L +        +GS D  + +W+
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.7 bits (122), Expect = 3e-08
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 5/120 (4%)

Query: 24  MEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDES 83
                  V+ + D S +L+DV    C +T    +  ++ +CF  +       S    D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS---DDAT 249

Query: 84  LRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKD--CFISGSLDRTVLLWDQRAEKCQGLLR 141
            RL  L  ++    +   +    + S+  SK     ++G  D    +WD       G+L 
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 29/207 (14%), Positives = 59/207 (28%), Gaps = 13/207 (6%)

Query: 93  KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---AAA 149
           +  R  +GH  ++  +   +     +S S D  +++WD         + ++       A 
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 150 YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS 209
                 V       +              V     G    L+                 +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 210 T----------YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSF 259
                                 +  S +P+    +SG+ D S   W VR G    ++   
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 260 DTEPPVIKWAPGSLMFVTGSSELSFWI 286
           +++   I + P    F TGS + +  +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRL 252

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 8e-11
 Identities = 48/316 (15%), Positives = 102/316 (32%), Gaps = 53/316 (16%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G  +V+ SDD +++++      CL+T+     GV       +      + +     +   
Sbjct: 27  GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 86

Query: 87  -------------LSLHDNKYSRYFKGHHDRVVLLSLCSSKDC----------------- 116
                        +        R   G  D  + +    +  C                 
Sbjct: 87  GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 146

Query: 117 ---FISGSLDRTVLLWDQRAEKCQGLLR--VQGRPAAAYDDQGLVFGYEKGPLDIFSVGG 171
               +SG+ D  V +WD   E C   L+       +  +D   +V G     + ++ V  
Sbjct: 147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET 206

Query: 172 -------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA 224
                      +          +++    +  + + D   G  L T       +++    
Sbjct: 207 GNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 266

Query: 225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP---PV--IKWAPGSLMFVTGS 279
            F+    FVI+ S DG+V  W +++G+ + + ++ ++      V  I+ +   L+   GS
Sbjct: 267 QFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324

Query: 280 S----ELSFWIPDLSK 291
                E    + D   
Sbjct: 325 RNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 93  KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR 141
           K  +  KGH D V+   L    +  +SGS D T+ +W     KC   L 
Sbjct: 7   KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (141), Expect = 2e-10
 Identities = 35/244 (14%), Positives = 68/244 (27%), Gaps = 37/244 (15%)

Query: 64  CFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLD 123
               +  +         D ++R+  L   + S           +           +GSLD
Sbjct: 167 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD 226

Query: 124 RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN 183
           R V +WD         L  +      + D                          V F+ 
Sbjct: 227 RAVRVWDSETGFLVERLDSENESGTGHKDS----------------------VYSVVFTR 264

Query: 184 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---------VSRNSTLEASFSPEGMFVI 234
           DG+ ++  +++  + + +       S                 ++  L  + +    +++
Sbjct: 265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 324

Query: 235 SGSGDGSVHAWSVRSGKEVASWMSFDTE------PPVIKWAPGSLMFVTGSSELSFWIPD 288
           SGS D  V  W  +SG  +                      P   +F TGS +    I  
Sbjct: 325 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

Query: 289 LSKL 292
             K+
Sbjct: 385 YKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 16/135 (11%)

Query: 23  SMEVGIYLVTASDDESIRLYDVTAATCLKTINSK-------KYGVDLVCFTSHPTTVIYS 75
           S   G Y+   S D ++R++D      ++ ++S+       K  V  V FT    +V+  
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 76  SKNG---------WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTV 126
           S +           +      + +       + GH D V+ ++   + +  +SGS DR V
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332

Query: 127 LLWDQRAEKCQGLLR 141
           L WD+++     +L+
Sbjct: 333 LFWDKKSGNPLLMLQ 347

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 1e-07
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 2/110 (1%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
             Y++T +DD+ IR+YD      L  ++    GV  + +      ++ S        +  
Sbjct: 23  DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWD 80

Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKC 136
           +      +         R + +    +    ++GS D T+ +W    E  
Sbjct: 81  IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 130

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 32/179 (17%)

Query: 98  FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF 157
            +GH   V+   L    +  I+G+ D+ + ++D   +K                      
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKF--------------------- 45

Query: 158 GYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS 217
                   +  + G       +K+++ G   L++        +   +    +       S
Sbjct: 46  --------LLQLSGHDGGVWALKYAHGGI--LVSGSTDRTVRVWDIKKGCCTHVFEGHNS 95

Query: 218 RNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFV 276
               L+        ++++GS D ++H W +     V         P V      +  FV
Sbjct: 96  TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSELSF 284
               E  +VI+G+ D  +  +   + K +      D     +K+A G +  V+GS++ + 
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTV 76

Query: 285 W 285
            
Sbjct: 77  R 77

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 224 ASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPV-IKWAPGSLMFVTGSSEL 282
            +F      ++SGS +   + +++RSGK V + +  D +    + +   +L+        
Sbjct: 288 TTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQ 346

Query: 283 SF-WIPDLS 290
           SF  I D S
Sbjct: 347 SFLEILDFS 355

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 28/277 (10%), Positives = 69/277 (24%), Gaps = 24/277 (8%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTI-----NSKKYGVDLVCFTSHPTTVIYSSKNGWD 81
             ++ T      ++++D++       +      ++   +          T+I   +    
Sbjct: 63  TRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121

Query: 82  ESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR 141
               L +      +           L     SK CF   S     +         +    
Sbjct: 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG 181

Query: 142 VQGRPAA-----------AYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLL 190
                +                   V  ++             S    + +   G  + +
Sbjct: 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV 241

Query: 191 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG 250
                ++ VL   +           +  +  L   F+  G + +S   D  ++AW    G
Sbjct: 242 GMESSNVEVLHVNK----PDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 297

Query: 251 KEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFW 285
             +       +       +      VTGS +   + +
Sbjct: 298 ASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 7e-07
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG 238
           +KF+  G+  + T  +  ++   +  G  +          +S L    S +  ++++GSG
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVDDKYIVTGSG 326

Query: 239 DGSVHAWSV 247
           D     + V
Sbjct: 327 DKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 7/68 (10%), Positives = 18/68 (26%), Gaps = 4/68 (5%)

Query: 63  VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL 122
           + F       + +     D  L                    V+   +       ++GS 
Sbjct: 271 LKFAYCGKWFVSTG---KDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSG 326

Query: 123 DRTVLLWD 130
           D+   +++
Sbjct: 327 DKKATVYE 334

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 34/292 (11%), Positives = 78/292 (26%), Gaps = 40/292 (13%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSK---KYGVDLVCFTSHPTTVIYSSKNGWDES 83
              L+  S D S+ +Y          +      K+ +    F  +    IY      +  
Sbjct: 23  KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82

Query: 84  LRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ 143
              L    +  +      +  +  +          +       +  D R      +    
Sbjct: 83  KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV-IDPRNYGDGVIAVKN 141

Query: 144 -------------------GRPAAAYDDQGL----VFGYEKGPLDIFSVGGDISDANVVK 180
                               R     ++  +    +   E     I   G      +V  
Sbjct: 142 LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL 201

Query: 181 FSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA------------SFSP 228
              +      ++++G + V            + +   R   L               FSP
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261

Query: 229 EGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSS 280
              F+ +   DG +  W++++ K++ ++  F+    V+K A    +    +S
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLATS 312

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 18/179 (10%), Positives = 44/179 (24%), Gaps = 22/179 (12%)

Query: 90  HDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA 149
            DN         +    +  L   ++ +   S+D  V +                +    
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF-----------FDDQGDDY 230

Query: 150 YDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS 209
              +   F   +               N ++FS   + +     +G I   +      + 
Sbjct: 231 NSSKRFAFRCHRL---NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287

Query: 210 TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVR----SGKEVASWMSFDTEPP 264
            +       N       +     +   + D +    +           + ++ FD E P
Sbjct: 288 NFA----KFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYENP 342

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 7/64 (10%), Positives = 20/64 (31%), Gaps = 3/64 (4%)

Query: 225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM-SFDTEPPV--IKWAPGSLMFVTGSSE 281
              P    ++  S DGS+  +      +    + S   + P+    +   + + +   + 
Sbjct: 18  KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77

Query: 282 LSFW 285
               
Sbjct: 78  QGEI 81

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 6/44 (13%), Positives = 16/44 (36%)

Query: 98  FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR 141
            +   D +  + +  SK   +  S D ++ ++    +     L 
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL 50

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (112), Expect = 6e-07
 Identities = 30/289 (10%), Positives = 63/289 (21%), Gaps = 48/289 (16%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW------ 80
              +      + + ++D         I        LV   ++P     +           
Sbjct: 68  FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV--GTYPWMTSLTPDGKTLLFYQF 125

Query: 81  --DESLRLLSLHDNKYSRYFKGH-------HDRVVLLSLCSSKDCFISGSLDRTVLLWDQ 131
               ++ ++ L    + R                     C                    
Sbjct: 126 SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH 185

Query: 132 RAEKCQGLLRVQGRPAAAYDDQGLVFGYEKG---------------------PLDIFSVG 170
                     +   PA +     LV+    G                          + G
Sbjct: 186 TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG 245

Query: 171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEA------ 224
                   V +      + L   +       +    +    + K   R +  E       
Sbjct: 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV-VVLDAKTGERLAKFEMGHEIDS 304

Query: 225 -SFSPEG--MFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAP 270
            + S +   +     +GD +++     SG+E+ S       P VI  A 
Sbjct: 305 INVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 1e-06
 Identities = 34/276 (12%), Positives = 77/276 (27%), Gaps = 25/276 (9%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF--------TSHPTTVIYSSKN 78
              +V+   D +I+++D     C + +      V  + +        +S  T  ++    
Sbjct: 25  DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 84

Query: 79  GWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG 138
           G   +  +       + R+  G           +  D      +    +L   RA     
Sbjct: 85  GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 144

Query: 139 LLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIH 198
               +   +A+ D    V+            G       +       RL++  + +  I 
Sbjct: 145 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG---IACLQYRDRLVVSGSSDNTIR 201

Query: 199 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMS 258
           + D   G  L                    +   ++SG+ DG +  W + +  +  +   
Sbjct: 202 LWDIECGACLRVLEGHEELVR-----CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 256

Query: 259 FDT-------EPPVIKWAPGSLMFVTGSSE--LSFW 285
                        V +        V+ S +  +  W
Sbjct: 257 TLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 10/110 (9%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNG----WD- 81
              +V+ S D +IRL+D+    CL+ +   +  V   C       ++  + +G    WD 
Sbjct: 188 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWDL 245

Query: 82  -ESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWD 130
             +L   +       R    H  RV    L   +   +S S D T+L+WD
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRV--FRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 13/197 (6%)

Query: 98  FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP---------AA 148
                  V  L     K   +SG  D T+ +WD+   +C+ +L                 
Sbjct: 11  RSETSKGVYCLQYDDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68

Query: 149 AYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL 208
                                        V+    +  +M+  + +  I V D    T +
Sbjct: 69  ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 128

Query: 209 STYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKW 268
           +   V    R +     F  + +   S SGD ++  W+  + + V +          +++
Sbjct: 129 TLRRVLVGHRAAVNVVDFDDKYIV--SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 186

Query: 269 APGSLMFVTGSSELSFW 285
               ++  +  + +  W
Sbjct: 187 RDRLVVSGSSDNTIRLW 203

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 23/237 (9%), Positives = 62/237 (26%), Gaps = 34/237 (14%)

Query: 30  LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL 89
           L       +     V  A+  +   S        CF  HP             SL    L
Sbjct: 139 LFFLFGSSAAAGLSVPGASDDQLTKSAS------CFHIHPGAAATHYLGSCPASLAASDL 192

Query: 90  HDNKYSRYFKGHH----DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR 145
                +    G            +  ++    +  ++  ++L  D  A        + G 
Sbjct: 193 AAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGN 252

Query: 146 PAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGH-IHVLDSFR 204
            +                    +     +   +V    +   +++ T+E     +  +  
Sbjct: 253 ESGRK-----------------ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295

Query: 205 GTLLSTYNVKPVSR----NSTLEASFSPEG--MFVISGSGDGSVHAWSVRSGKEVAS 255
            + ++    +        + +     + +G      + +G   +  +   S ++ +S
Sbjct: 296 TSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.5 bits (108), Expect = 2e-06
 Identities = 27/276 (9%), Positives = 76/276 (27%), Gaps = 13/276 (4%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
           G  L +A  +  I  +D++     +        +     T+    +   S +   + +  
Sbjct: 24  GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA 83

Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
                +           + + L++ +  D  ++       +    +  +           
Sbjct: 84  GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVA 143

Query: 147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLM---------LLTTMEGHI 197
            +       V G +         G  +S+   +    +   +         + T     +
Sbjct: 144 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKV 203

Query: 198 HVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM 257
                     L+  N            S+SP+ + + +GS D SV  W++    +    +
Sbjct: 204 IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII 263

Query: 258 SFDTEPPVIK---WAPGSLMFVTGSSELSFWIPDLS 290
                   +    W   +   V+   + +    ++ 
Sbjct: 264 KGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 5e-04
 Identities = 7/39 (17%), Positives = 16/39 (41%)

Query: 225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP 263
           S S +G  + S   +G +++W + +G     +       
Sbjct: 19  SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM 57

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 0.002
 Identities = 7/44 (15%), Positives = 13/44 (29%)

Query: 98  FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR 141
             GH+  +  LS  +      S   +  +  WD        +  
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 51

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 20/166 (12%), Positives = 47/166 (28%), Gaps = 6/166 (3%)

Query: 98  FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVF 157
            K H   +   S+ +     +S S D  + +WD +    +                  V 
Sbjct: 10  GKAHDADI--FSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 158 GYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS 217
             +    D      ++       FS D     +T  +    V+      L S        
Sbjct: 68  VLQAIERD----AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 218 RNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP 263
                 ++       +++    G+ + W      + ++ ++ +  P
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 169

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 31/308 (10%), Positives = 76/308 (24%), Gaps = 43/308 (13%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------- 78
              + T S    +  Y +T     K +  +K  +       H    +    +        
Sbjct: 79  LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 138

Query: 79  ----GWDESLRLLSLHDNKYSRYFKGHHDRVVL----------------LSLCSSKDCFI 118
                   +  +   H           +    L                 S+  S+   I
Sbjct: 139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLI 198

Query: 119 -SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDAN 177
            +G  + TV + +    +       Q       +   +          + ++  D +   
Sbjct: 199 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS--IRSVKFSPQGSLLAIAHDSNSFG 256

Query: 178 VVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS 237
            +          + ++    H   +  G    +  V  +S        F+  G  + S  
Sbjct: 257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS--------FNDSGETLCSAG 308

Query: 238 GDGSVHAWSVRSGKEVASWM----SFDTEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLG 293
            DG +  W V++ + + +        + E  ++                  ++    + G
Sbjct: 309 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG 368

Query: 294 AYVGRNRG 301
                N  
Sbjct: 369 MGADLNES 376

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 25/256 (9%), Positives = 63/256 (24%), Gaps = 18/256 (7%)

Query: 29  YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN---------- 78
           + V+ S D  ++++D          +             H   +    ++          
Sbjct: 26  FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85

Query: 79  GWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAE-KCQ 137
            +   L    +     ++        ++   +       +        LL  +      +
Sbjct: 86  SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 145

Query: 138 GLLRVQGRPAAAYDDQGLVFGYEK---GPLDIFSVGGDISDANVVKFSNDGRLMLLTTME 194
           G   +      A +   L   +         + S       A  V  S  G +       
Sbjct: 146 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLI-ATGFNN 204

Query: 195 GHIHVLDSFRGTLLSTYNVKPVSRNST---LEASFSPEGMFVISGSGDGSVHAWSVRSGK 251
           G + + +      L  +  +    N++       FSP+G  +       S    ++   +
Sbjct: 205 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264

Query: 252 EVASWMSFDTEPPVIK 267
                 S        +
Sbjct: 265 FGERIGSLSVPTHSSQ 280

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 18/229 (7%), Positives = 53/229 (23%), Gaps = 12/229 (5%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
            +          + ++        K + +      +    +     +Y +          
Sbjct: 112 RLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI----YK 167

Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
           + +   KY+      +      S       +   S      +    A             
Sbjct: 168 MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT-- 225

Query: 147 AAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 206
            A      L    + G                   S       +  +   +   D  +  
Sbjct: 226 -ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGVLNRLAKYDLKQRK 283

Query: 207 LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS 255
           L+   N+     ++    +F  +G  +  G     +  ++  + ++V +
Sbjct: 284 LIKAANLD----HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 26/272 (9%), Positives = 64/272 (23%), Gaps = 19/272 (6%)

Query: 29  YLVTASDDESIRLYDVTAATCLKTINSK-KYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87
           Y++  +   ++ + DV + T  K+     K+G           T      N     +  +
Sbjct: 10  YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVL--NNHYGDIYGI 67

Query: 88  SLHDNKYSRYF------KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLR 141
            L   K + +             +   ++        +       L            L 
Sbjct: 68  DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND--HYVVKPPRLE 125

Query: 142 VQGRPAAAYDDQGLVFGYEKGP-LDIFSVGGDISDAN----VVKFSNDGRLMLLTTMEGH 196
           V              F   +   L   +  G +  A      +        + L     +
Sbjct: 126 VFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWN 185

Query: 197 IHVLDSFRG-TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS 255
                +          + +         A F  +     +        +  +++GK    
Sbjct: 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 245

Query: 256 WMSFDTE--PPVIKWAPGSLMFVTGSSELSFW 285
             +  TE     ++            + L+ +
Sbjct: 246 EFADLTELYFTGLRSPKDPNQIYGVLNRLAKY 277

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 3/91 (3%)

Query: 179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV-ISGS 237
                    M++T    ++HV+D    T+  +  +       T     +P+     +  +
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTA--MMAPDNRTAYVLNN 59

Query: 238 GDGSVHAWSVRSGKEVASWMSFDTEPPVIKW 268
             G ++   + + K             V + 
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRS 90

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASW-MSFDTEPPVIKWAPGSLMFVTGSS--E 281
           ++SP+G  + S S D ++  W+V + K   +  +    E   +         V+ S+   
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 282 LSFWIPD 288
           ++F  P+
Sbjct: 305 INFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNG----WD 81
           G  + +AS D++I++++V      KTI    +     +        ++  S NG     +
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 6/53 (11%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 79  GWDESLRLLSLHDNKYSRYFKGHHDRVV-LLSLCSSKDCFISGSLDRTVLLWD 130
             D+++++ ++   K  +            L +  +K   +S S +  +   +
Sbjct: 257 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (96), Expect = 9e-05
 Identities = 30/235 (12%), Positives = 65/235 (27%), Gaps = 26/235 (11%)

Query: 28  IYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL 87
           ++ VT  D   I L D +       +++  Y V +   ++    +    ++G    + L 
Sbjct: 33  LFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLW 91

Query: 88  SLHDNKYSRYFKGHHDRVVLLSLCSSKD---CFISGSLDRTVLLWDQRAEKCQGLLRVQG 144
                  +    G   R +  S     +              ++ D    +     ++Q 
Sbjct: 92  MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP---KKIQS 148

Query: 145 RPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME-GHIHVLDSF 203
                YD+Q                         +  S+     ++   E G I ++D  
Sbjct: 149 TRGMTYDEQEYHPE---------------PRVAAILASHYRPEFIVNVKETGKILLVDYT 193

Query: 204 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGS-VHAWSVRSGKEVASWM 257
               L T  +                  + I+ +   + +     + GK VA   
Sbjct: 194 DLNNLKTTEISAERFLHDG--GLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 246

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 16/154 (10%), Positives = 40/154 (25%), Gaps = 11/154 (7%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL 86
              L   S        D         + SK + + L+  + +PT ++  S         L
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249

Query: 87  LSLHDNKYSRYF-----------KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEK 135
             ++                   +       +         +        +L +D +  K
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK 309

Query: 136 CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSV 169
              +         + D + ++   + G +  F +
Sbjct: 310 VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 14/196 (7%), Positives = 44/196 (22%), Gaps = 21/196 (10%)

Query: 90  HDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA 149
            + +        +      +  +        S        D+        +  +      
Sbjct: 166 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL 225

Query: 150 YDDQGLVFGYEKGPLDIFSVGG---DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT 206
                         +   +      D+   +     + G   ++  +E  I +       
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285

Query: 207 LLSTYNVKPVSRNST-----------------LEASFSPEGMFVISGSGDGSVHAWSVRS 249
             + Y      +                     +   S +   V+    DG ++ + +  
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345

Query: 250 GKEVASWMSFDTEPPV 265
            ++  + +  D  P V
Sbjct: 346 PEDERT-VETDKRPLV 360

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 6/79 (7%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG 238
             ++ D   + +      +H+ +      +  + +K           ++P+   +++   
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGT 71

Query: 239 DGSVHAWSVRSGKEVASWM 257
           D + + W+++      + +
Sbjct: 72  DRNAYVWTLKGRTWKPTLV 90

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 225 SFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPV--IKWAPGSLMFVTGSSEL 282
           +++ +   +     +  VH +     K V      +    V  + WAP S   VT  ++ 
Sbjct: 14  AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR 73

Query: 283 SFWI 286
           + ++
Sbjct: 74  NAYV 77

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 5/77 (6%)

Query: 63  VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY--FKGHHDRVVLLSLCSSKDCFISG 120
             +    T +     N     + +     NK+ +    K H+ +V  +      +  ++ 
Sbjct: 13  HAWNKDRTQIAICPNNH---EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 121 SLDRTVLLWDQRAEKCQ 137
             DR   +W  +    +
Sbjct: 70  GTDRNAYVWTLKGRTWK 86

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 27  GIYLVTASDDESIRLYDVTAATCLKTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESL 84
                T   D +IR++DVT + C++      ++ G   V   +     I S     D +L
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL--SLDGTL 320

Query: 85  RLLSL 89
               L
Sbjct: 321 NFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 9/65 (13%), Positives = 22/65 (33%)

Query: 183 NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV 242
            D +       +  I V D      +  + +      +      +     +IS S DG++
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320

Query: 243 HAWSV 247
           + + +
Sbjct: 321 NFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 79  GWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLC---SSKDCFISGSLDRTVLLWD 130
           G D ++R+  +  +K  + +     ++    +    +     IS SLD T+  ++
Sbjct: 270 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 228 PEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWA---PGSLMFVTGSSE--L 282
            +     +   D ++  W V + K V  W     +    +      G+   ++ S +  L
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320

Query: 283 SFW 285
           +F+
Sbjct: 321 NFY 323

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 16/198 (8%), Positives = 44/198 (22%), Gaps = 16/198 (8%)

Query: 59  GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFI 118
            + ++ +    + +    ++       ++                     +       + 
Sbjct: 136 QITMLAWARDGSKLYGLGRDLH-----VMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN 190

Query: 119 SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANV 178
                  +      A K             AY    L    E G + +  V         
Sbjct: 191 QHESSGVMATPFYTARKDIDPADP-----TAYRTGLLTMDLETGEMAMREVRIMDVFYFS 245

Query: 179 VKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG 238
              +              +   D  +   +    +     +S    + S +G  V  G  
Sbjct: 246 TAVNPAKTR--AFGAYNVLESFDLEKNASIKRVPLP----HSYYSVNVSTDGSTVWLGGA 299

Query: 239 DGSVHAWSVRSGKEVASW 256
            G + A+   + ++    
Sbjct: 300 LGDLAAYDAETLEKKGQV 317

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 9e-04
 Identities = 21/249 (8%), Positives = 53/249 (21%), Gaps = 19/249 (7%)

Query: 29  YLVTASDDESIRLYDVTAATCLKTINSKKYG--VDLVCFTSHPTTVIYSSKNGWDESLRL 86
           Y++  +  + + + D       K I     G    +            +      ESL  
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYAT--VNKSESLVK 60

Query: 87  LSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP 146
           + L   +                         + S D   L   +   + +         
Sbjct: 61  IDLVTGETLGRIDLSTPEE-----RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115

Query: 147 AAAYDD--QGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME--GHIHVLDS 202
             A  D          + P  I  +      + +     D  +M            +   
Sbjct: 116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSW 175

Query: 203 FRGTLLSTYNVKPVSRNS------TLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW 256
              T      +   +++       T   +   +       +    +    + +G+     
Sbjct: 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235

Query: 257 MSFDTEPPV 265
           +        
Sbjct: 236 VRIMDVFYF 244

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 7/135 (5%)

Query: 163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS--RNS 220
            + +   G      ++ + S  GR +L+   +  I ++D +         +K     R+ 
Sbjct: 54  IVKVIDTG---YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110

Query: 221 TLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIK--WAPGSLMFVTG 278
                   E  + I+G+      A       E    +S        +       +  +  
Sbjct: 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 170

Query: 279 SSELSFWIPDLSKLG 293
           S E   +I ++ + G
Sbjct: 171 SHEHPEFIVNVKETG 185

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 465

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 24/219 (10%), Positives = 55/219 (25%), Gaps = 12/219 (5%)

Query: 50  LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH----DNKYSRYFKGHHDRV 105
           +  +N   + ++++          Y +   W  S ++         N            V
Sbjct: 232 VIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291

Query: 106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD 165
                    + ++    +  V   D R       +   GR    +               
Sbjct: 292 CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI 351

Query: 166 IFSVGGDISDANVVKFSNDGRLMLLTT-----MEGHIHVLDSFRGTLLSTYNVKPVSRNS 220
                GD     ++ +   G  +   +         ++  ++         +   V   +
Sbjct: 352 QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCT 411

Query: 221 TLEASFSPEGMFVI---SGSGDGSVHAWSVRSGKEVASW 256
              ASFS    F +    G G   V   +    K++   
Sbjct: 412 YFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	304
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.9
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.73
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.67
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.56
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.56
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.54
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.52
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.52
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.5
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.46
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.42
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.41
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.4
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.3
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.27
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.19
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.18
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.18
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.17
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.13
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.12
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.1
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.06
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.7
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.63
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.6
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.55
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.42
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.39
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.17
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.07
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.05
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.98
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.97
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.94
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.92
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.76
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.69
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.66
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.62
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.58
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.47
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.45
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.38
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.34
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.24
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.05
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.57
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	96.5
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.34
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.25
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.19
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.16
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.26
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.9
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.9
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.69
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.26
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	91.5
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	88.46
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	86.43

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-42  Score=273.35  Aligned_cols=272  Identities=17%  Similarity=0.285  Sum_probs=241.1

Q ss_pred             cceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585            9 EDKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   85 (304)
Q Consensus         9 ~~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~   85 (304)
                      ++...+++|.+.   +.++|++++|+||+.||+|+|||+++++++.++.+|...|.+++|+|++..++++..   ++.+.
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~---~~~~~   84 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA---DMTIK   84 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET---TSCCC
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc---ccccc
Confidence            445678888765   567889999999999999999999999999999999999999999999999999998   99999


Q ss_pred             EEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCCeEE--EecC
Q 036585           86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVF--GYEK  161 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~  161 (304)
                      +|+....+....+..|...+.++.|+|+++.+++++.|+.+++||+++++....+..+...  .+.+++++.++  +..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          85 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCC
Confidence            9999999888888999999999999999999999999999999999998887777654433  45667766443  5567


Q ss_pred             CCeEEEEe---------cCCCCCceEEEEecCC--------------------cEEEEeeCCCeEEEEEcCCCceeEEEE
Q 036585          162 GPLDIFSV---------GGDISDANVVKFSNDG--------------------RLMLLTTMEGHIHVLDSFRGTLLSTYN  212 (304)
Q Consensus       162 ~~~~~~~~---------~~~~~~v~~~~~~~~~--------------------~~l~~~~~dg~i~~~d~~~~~~~~~~~  212 (304)
                      +.+.+|+.         ..+...+.++.|+|++                    .++++++.|+.|++||+++++.+.++.
T Consensus       165 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~  244 (317)
T d1vyhc1         165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  244 (317)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe
Confidence            77777764         3567778888887754                    478899999999999999999999988


Q ss_pred             eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585          213 VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       213 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                         .|...|.+++|+|++++|++|+.||.|++||+++++++..+.+|..+|++++|+|++++|++|+.|  ++||+
T Consensus       245 ---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         245 ---GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ---CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             ---CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence               688999999999999999999999999999999999999999999999999999999999999999  89986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-43  Score=277.03  Aligned_cols=259  Identities=12%  Similarity=0.152  Sum_probs=220.1

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCccee-----eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc--
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCL-----KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN--   92 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~--   92 (304)
                      .+.++++|++|++|+ ||.|+|||+.++...     ....+|...|.+++|+|++++|++++.   |+.|++||+...  
T Consensus        56 ~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~---dg~i~iwd~~~~~~  131 (337)
T d1gxra_          56 AVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE---ASTLSIWDLAAPTP  131 (337)
T ss_dssp             EEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES---SSEEEEEECCCC--
T ss_pred             EEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec---cccccccccccccc
Confidence            478899999999997 799999999865432     233468889999999999999999998   999999998754  


Q ss_pred             eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCC--eEEEecCCCeEEEE
Q 036585           93 KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQG--LVFGYEKGPLDIFS  168 (304)
Q Consensus        93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~  168 (304)
                      +....+..|...+.++.|+|++.++++++.|+.|++|++++++.......+...  .+.+++++  .+.+..++.+.+|+
T Consensus       132 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d  211 (337)
T d1gxra_         132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456677789999999999999999999999999999999988876655443332  45566665  44456677888887


Q ss_pred             ec--------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC
Q 036585          169 VG--------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG  240 (304)
Q Consensus       169 ~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  240 (304)
                      +.        .+...|.+++|+|++++|++++.||.+++||+++++.....    .|...|++++|+|++++|++++.||
T Consensus       212 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~i~~v~~s~~g~~l~s~s~Dg  287 (337)
T d1gxra_         212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH----LHESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC----CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccceeecccccccceEEEEEcccccccceecccccccccccccccccccc----ccccccceEEECCCCCEEEEEeCCC
Confidence            64        35788999999999999999999999999999988765433    4889999999999999999999999


Q ss_pred             cEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585          241 SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       241 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~  287 (304)
                      .|++||+.+++++..+. |..+|++++|+|++++|++|+.|  ++||++
T Consensus       288 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         288 LLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             eEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999999887764 88899999999999999999998  999975

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9e-43  Score=273.68  Aligned_cols=247  Identities=18%  Similarity=0.248  Sum_probs=207.6

Q ss_pred             eeeeccee---eEeecccCcEEEEeeCCCeEEEEecCCccee--eeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           12 VSLELSEE---ILQSMEVGIYLVTASDDESIRLYDVTAATCL--KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        12 ~~~~~~~~---~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      ..+.+|..   .+.++|+|++||+|+.||+|++||+.+++..  ..+..|..+|.+++|+|+++.+++++.. .+..+++
T Consensus        52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~-~~~~~~v  130 (311)
T d1nr0a1          52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG-RERFGHV  130 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECC-SSCSEEE
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccc-ccccccc
Confidence            34455544   4668999999999999999999999887644  5578899999999999999999998852 1567999


Q ss_pred             EEccCceeeeecccccccEEEEEEcCCCCE-EEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           87 LSLHDNKYSRYFKGHHDRVVLLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        87 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                      |++++++....+.+|...|.+++|+|++++ |++|+.|+.|++||+++.+....+                         
T Consensus       131 ~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~-------------------------  185 (311)
T d1nr0a1         131 FLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-------------------------  185 (311)
T ss_dssp             EETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-------------------------
T ss_pred             cccccccccccccccccccccccccccceeeeccccccccccccccccccccccc-------------------------
Confidence            999999999999999999999999999884 888999999999999987665443                         


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC----CCCCCcceEEEEcCCCcEEEEecCCCc
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK----PVSRNSTLEASFSPEGMFVISGSGDGS  241 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~  241 (304)
                          ..|...|+++.|+|+++++++++.||.|++||+++++....+...    .+|...|++++|+|++++|++|+.||.
T Consensus       186 ----~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~  261 (311)
T d1nr0a1         186 ----GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT  261 (311)
T ss_dssp             ----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ----ccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCe
Confidence                257788999999999999999999999999999998887776532    246788999999999999999999999


Q ss_pred             EEEEecCCCceeeeeeccCC-CCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          242 VHAWSVRSGKEVASWMSFDT-EPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       242 i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      |+|||+++++++.++..|.. ....+.+.+++..|++++.|  +++|+++
T Consensus       262 v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         262 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            99999999999998876643 22334444456678888888  9999875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.8e-42  Score=272.11  Aligned_cols=245  Identities=21%  Similarity=0.305  Sum_probs=208.0

Q ss_pred             cceeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585            9 EDKVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   85 (304)
Q Consensus         9 ~~~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~   85 (304)
                      ....++++|.+.   +.++|++++||+|+.||+|+|||+.+++.+..+..|..+|.+++|+|+++++++++.   |+.++
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---d~~i~  122 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL---DNICS  122 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEET---TCCEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecc---cceee
Confidence            445667888775   567889999999999999999999999999999999999999999999999999998   99999


Q ss_pred             EEEccCce----eeeecc-----------------------------------------cccccEEEEEEcCCCCEEEEc
Q 036585           86 LLSLHDNK----YSRYFK-----------------------------------------GHHDRVVLLSLCSSKDCFISG  120 (304)
Q Consensus        86 vwd~~~~~----~~~~~~-----------------------------------------~~~~~v~~~~~~~~~~~l~~~  120 (304)
                      +|+.....    ....+.                                         .+...+....+.+.+.+++++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (340)
T d1tbga_         123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             EEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence            99976432    111111                                         233455666667777777777


Q ss_pred             ccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEE
Q 036585          121 SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVL  200 (304)
Q Consensus       121 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  200 (304)
                      +.|+.|++||+++++....+                             .+|...|++++|+|++++|++++.||.|++|
T Consensus       203 ~~d~~v~i~d~~~~~~~~~~-----------------------------~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~  253 (340)
T d1tbga_         203 ACDASAKLWDVREGMCRQTF-----------------------------TGHESDINAICFFPNGNAFATGSDDATCRLF  253 (340)
T ss_dssp             ETTTEEEEEETTTTEEEEEE-----------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ecCceEEEEECCCCcEEEEE-----------------------------eCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence            78888888887776654433                             3678899999999999999999999999999


Q ss_pred             EcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecC
Q 036585          201 DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSS  280 (304)
Q Consensus       201 d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  280 (304)
                      |++..+....+... .+...+.+++|+|++++|++|+.||.|++||+.+++++..+.+|.++|++++|+|++++|++|+.
T Consensus       254 ~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         254 DLRADQELMTYSHD-NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             ETTTTEEEEEECCT-TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             eecccccccccccc-cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence            99998887776533 46678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c--eEEec
Q 036585          281 E--LSFWI  286 (304)
Q Consensus       281 d--~~iw~  286 (304)
                      |  ++||+
T Consensus       333 Dg~v~iWd  340 (340)
T d1tbga_         333 DSFLKIWN  340 (340)
T ss_dssp             TSCEEEEC
T ss_pred             CCEEEEeC
Confidence            8  99996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-41  Score=275.15  Aligned_cols=264  Identities=20%  Similarity=0.368  Sum_probs=217.7

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeec------------------ccccceeEEEEccCCCeEEEEecCCCC
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN------------------SKKYGVDLVCFTSHPTTVIYSSKNGWD   81 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~~~~~~~~d   81 (304)
                      .++++++|++||+|+ |+.|+|||+.+++.+..+.                  .|...|.+++|+|++++|++++.   |
T Consensus        67 ~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~---d  142 (388)
T d1erja_          67 CVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE---D  142 (388)
T ss_dssp             EEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET---T
T ss_pred             EEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccc---c
Confidence            478899999999987 8899999999988776654                  34556999999999999999998   9


Q ss_pred             CceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc-eeEe-cCCC--eEE
Q 036585           82 ESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAY-DDQG--LVF  157 (304)
Q Consensus        82 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~-~~~~--~~~  157 (304)
                      +.|++||...++.+..+.+|...|.++.+++++..+++++.++.+++||.++............. ...+ ..++  .+.
T Consensus       143 g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  222 (388)
T d1erja_         143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA  222 (388)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999988776655443332 2222 3333  334


Q ss_pred             EecCCCeEEEEec----------------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEE---------
Q 036585          158 GYEKGPLDIFSVG----------------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYN---------  212 (304)
Q Consensus       158 ~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---------  212 (304)
                      +..++.+.+|+..                +|...|.+++|+|++++|++++.||.|++||+++++......         
T Consensus       223 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  302 (388)
T d1erja_         223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV  302 (388)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEE
T ss_pred             EcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceee
Confidence            5667788887653                356789999999999999999999999999997654432211         


Q ss_pred             eCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEE------eCCCCcEEEEecCc--eEE
Q 036585          213 VKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIK------WAPGSLMFVTGSSE--LSF  284 (304)
Q Consensus       213 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~------~~~~~~~l~s~~~d--~~i  284 (304)
                      ....|...|++++|+|++++|++|+.||.|++||+++++++..+.+|.+.|++++      |+|++.+|++|+.|  |+|
T Consensus       303 ~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~i  382 (388)
T d1erja_         303 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI  382 (388)
T ss_dssp             EEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred             ecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEE
Confidence            1114778999999999999999999999999999999999999999999999987      56799999999999  888


Q ss_pred             ecc
Q 036585          285 WIP  287 (304)
Q Consensus       285 w~~  287 (304)
                      |++
T Consensus       383 W~~  385 (388)
T d1erja_         383 WKY  385 (388)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            876

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.5e-42  Score=270.29  Aligned_cols=247  Identities=12%  Similarity=0.147  Sum_probs=214.1

Q ss_pred             cceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           16 LSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        16 ~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      +....+.+.|+|+.|+.++ ++.+.+|++++++....+.+|...|.+++|+|++++|++++.   |+.|++||+.+++..
T Consensus        18 ~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~---dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV---HGNVRIWDTTQTTHI   93 (311)
T ss_dssp             TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEESSSTTCC
T ss_pred             CCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEecccc---CceEeeeeeeccccc
Confidence            4455688999999999886 567999999999999999999999999999999999999998   999999999887643


Q ss_pred             --eecccccccEEEEEEcCCCCEEEEccc--CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585           96 --RYFKGHHDRVVLLSLCSSKDCFISGSL--DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG  171 (304)
Q Consensus        96 --~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (304)
                        ..+..|..+|.+++|+|+++++++++.  +..+++|++++++....+.                             +
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~-----------------------------~  144 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT-----------------------------G  144 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC-----------------------------C
T ss_pred             cccccccccCcccccccccccccccccccccccccccccccccccccccc-----------------------------c
Confidence              457789999999999999999999875  4569999999877655442                             5


Q ss_pred             CCCCceEEEEecCCcE-EEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC
Q 036585          172 DISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG  250 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~  250 (304)
                      |...|++++|+|++++ |++|+.||.|++||+++++....+.   .|..+|++++|+|+++++++++.|+.|++||+.++
T Consensus       145 h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~---~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         145 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG---EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             cccccccccccccceeeecccccccccccccccccccccccc---cccccccccccCccccccccccccccccccccccc
Confidence            7788999999999985 7789999999999999998888777   68899999999999999999999999999999988


Q ss_pred             ceeeee-------eccCCCCceEEeCCCCcEEEEecCc--eEEeccCCccc-cccccC
Q 036585          251 KEVASW-------MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSKL-GAYVGR  298 (304)
Q Consensus       251 ~~~~~~-------~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~~-~~~~~~  298 (304)
                      +.+..+       .+|...|++++|+|++++|++|+.|  ++||+++..++ +.+..+
T Consensus       222 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         222 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             cccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECC
Confidence            776554       3688899999999999999999998  99999876553 444433

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.1e-42  Score=274.76  Aligned_cols=243  Identities=11%  Similarity=0.068  Sum_probs=206.7

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcc--eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee--
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAAT--CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY--   94 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~--   94 (304)
                      ..+.++|+|++||+++.|+.|+|||.++++  .+..+.+|..+|.+++|+|++++|++++.   |+.|++||+.+++.  
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~---D~~i~vWd~~~~~~~~   87 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT---DRNAYVWTLKGRTWKP   87 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET---TSCEEEEEEETTEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC---CCeEEEEeeccccccc
Confidence            467889999999999999999999998765  66778999999999999999999999998   99999999987653  


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS  174 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (304)
                      ...+.+|...|.+++|+|+++.|++++.|+.+++|+++..........                         ....|..
T Consensus        88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~-------------------------~~~~~~~  142 (371)
T d1k8kc_          88 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH-------------------------IKKPIRS  142 (371)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE-------------------------ECTTCCS
T ss_pred             ccccccccccccccccccccccceeecccCcceeeeeecccccccccc-------------------------ccccccc
Confidence            445667889999999999999999999999999999876554333221                         1235678


Q ss_pred             CceEEEEecCCcEEEEeeCCCeEEEEEcCCCcee---------------EEEEeCCCCCCcceEEEEcCCCcEEEEecCC
Q 036585          175 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL---------------STYNVKPVSRNSTLEASFSPEGMFVISGSGD  239 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  239 (304)
                      .|.+++|+|++++|++++.||.|++||.......               ........|...+.+++|+|++++|++++.|
T Consensus       143 ~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d  222 (371)
T d1k8kc_         143 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD  222 (371)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             ccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC
Confidence            8999999999999999999999999998643211               1112223578889999999999999999999


Q ss_pred             CcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCC
Q 036585          240 GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       240 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~  289 (304)
                      +.|++||+.+++.+..+..|..+|.+++|+|++++|++|+++ +++|.++.
T Consensus       223 ~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~  273 (371)
T d1k8kc_         223 STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS  273 (371)
T ss_dssp             TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             CcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeC
Confidence            999999999999999999999999999999999999988876 78877654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-38  Score=248.75  Aligned_cols=270  Identities=14%  Similarity=0.183  Sum_probs=209.0

Q ss_pred             eeeeecceee---EeecccCcEEEEeeCCCeEEEEecCCcceeeeec-ccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585           11 KVSLELSEEI---LQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN-SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus        11 ~~~~~~~~~~---i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      ...+.+|...   +.++|+|++|++|+.||+|++||+++++.++.+. .|...|.+++|+|++..+++ +.   |+.+++
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~-~~---d~~v~~   80 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV-SW---DDHLKV   80 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEE-ET---TTEEEE
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecc-cc---eeeEEE
Confidence            4567778665   5678999999999999999999999999888875 68899999999999975544 44   999999


Q ss_pred             EEccCcee---eeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCe--EEEecC
Q 036585           87 LSLHDNKY---SRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL--VFGYEK  161 (304)
Q Consensus        87 wd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  161 (304)
                      |+......   ......+...+.+++|+|+++.+++++ ++.+++|+.....  ..........+++++++.  +.+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~g~~d  157 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLT--EVPISYNSSCVALSNDKQFVAVGGQD  157 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEE--EEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             eccCCccccccccccccccccccccccccccccccccc-ccccccccccccc--cccccccccccccccccccccccccc
Confidence            99875432   122335677899999999998776654 5789999865322  222222334566777764  346677


Q ss_pred             CCeEEEEec----------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc
Q 036585          162 GPLDIFSVG----------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM  231 (304)
Q Consensus       162 ~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  231 (304)
                      +.+.+|++.          .|...|++++|+|++++|++++.++.|++||+.++...........|...|++++|+|+++
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  237 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV  237 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888888764          3678899999999999999999999999999988877665554446889999999999999


Q ss_pred             EEEEecCCCcEEEEecCCCceeeee--ecc-CCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          232 FVISGSGDGSVHAWSVRSGKEVASW--MSF-DTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       232 ~l~~~~~dg~i~v~d~~~~~~~~~~--~~~-~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      +|++|+.||.|++||+++++....+  ..| ...+.++.| +++++|++++.|  +++|++.
T Consensus       238 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            9999999999999999876543322  333 345566655 567789999988  9999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-37  Score=241.95  Aligned_cols=248  Identities=14%  Similarity=0.147  Sum_probs=196.6

Q ss_pred             ceeeeecce----eeEeecc--cCcEEEEeeCCCeEEEEecCCccee--------eeecccccceeEEEEccCCCeEEEE
Q 036585           10 DKVSLELSE----EILQSME--VGIYLVTASDDESIRLYDVTAATCL--------KTINSKKYGVDLVCFTSHPTTVIYS   75 (304)
Q Consensus        10 ~~~~~~~~~----~~i~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~   75 (304)
                      ....+.+|.    ..++++|  +|++|++|+.||+|+|||+..++..        ..+..|..+|.+++|+++++.++++
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  133 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  133 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence            344455442    3477876  5789999999999999998765433        2345577889999999999999888


Q ss_pred             ecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCE-EEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCC
Q 036585           76 SKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQG  154 (304)
Q Consensus        76 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  154 (304)
                      +.+ .++.+++|+..+++.+..+.+|...|.+++|+|++.+ +++++.|+.+++||++..+.......            
T Consensus       134 ~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~------------  200 (325)
T d1pgua1         134 GEG-RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT------------  200 (325)
T ss_dssp             ECC-SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS------------
T ss_pred             ecc-ccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccc------------
Confidence            752 2788999999999999999999999999999998764 77899999999999887665433321            


Q ss_pred             eEEEecCCCeEEEEecCCCCCceEEEEecC-CcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc---CCC
Q 036585          155 LVFGYEKGPLDIFSVGGDISDANVVKFSND-GRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS---PEG  230 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s---~~~  230 (304)
                                    ...+...|.+++|+|+ +.++++++.||.|++||+++++.+..+.   .|..++..+.|+   |++
T Consensus       201 --------------~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~---~~~~~v~~~~~s~~~~dg  263 (325)
T d1pgua1         201 --------------HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE---DDQEPVQGGIFALSWLDS  263 (325)
T ss_dssp             --------------SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC---BTTBCCCSCEEEEEESSS
T ss_pred             --------------ccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc---ccccccccceeeeeccCC
Confidence                          1246678999999996 6889999999999999999999888877   455665555555   689


Q ss_pred             cEEEEecCCCcEEEEecCCCceeeeeeccCCCC--ceEEeCCC-CcEEEEecCc--eEEecc
Q 036585          231 MFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP--PVIKWAPG-SLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       231 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i--~~~~~~~~-~~~l~s~~~d--~~iw~~  287 (304)
                      ++|++++.|+.|+|||+++++++..+..|...+  ..+++.+. +.+|++++.|  +++|++
T Consensus       264 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            999999999999999999999998887666554  34444433 3478888888  999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-36  Score=238.34  Aligned_cols=274  Identities=19%  Similarity=0.298  Sum_probs=208.4

Q ss_pred             ccceeeeecceeeE-e-ecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceE
Q 036585            8 REDKVSLELSEEIL-Q-SMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLR   85 (304)
Q Consensus         8 ~~~~~~~~~~~~~i-~-~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~   85 (304)
                      .+....+++|.+.| . +.++|++||||+.||+|+|||+.++++++++.+|...|.+++|+|+  .|++++.   |+.++
T Consensus         6 ~~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~---D~~~~   80 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGST---DRTLK   80 (342)
T ss_dssp             CCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEET---TSCEE
T ss_pred             CCcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--cccccee---ccccc
Confidence            34556788998653 3 5678999999999999999999999999999999999999999864  8999988   99999


Q ss_pred             EEEccCceeeeecccccccEEE--------------------------------------EEEcCCCCEEEEcccCCeEE
Q 036585           86 LLSLHDNKYSRYFKGHHDRVVL--------------------------------------LSLCSSKDCFISGSLDRTVL  127 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~~v~~--------------------------------------~~~~~~~~~l~~~~~dg~i~  127 (304)
                      +|+............+...+..                                      ..+.+....+++++.|+.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK  160 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred             ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence            9998765443322222111111                                      12223445677788888888


Q ss_pred             EEeCCcceeeceEEEeccceeE--ecCCCeEEEecCCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCe
Q 036585          128 LWDQRAEKCQGLLRVQGRPAAA--YDDQGLVFGYEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGH  196 (304)
Q Consensus       128 iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~  196 (304)
                      +||++.......+..+......  +++...+.+..++.+++|++.         .|...+.++.+  ++++|++++.||.
T Consensus       161 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~s~d~~  238 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST  238 (342)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSC
T ss_pred             EeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEec--CCCEEEEEcCCCE
Confidence            8888877766655544443333  344445567778888888754         45666766665  4579999999999


Q ss_pred             EEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeee-----ccCCCCceEEeCCC
Q 036585          197 IHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWM-----SFDTEPPVIKWAPG  271 (304)
Q Consensus       197 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~i~~~~~~~~  271 (304)
                      |++||+...+....+.....+...+.++.++  ++++++|+.||.|++||+++++.+..+.     +|...|++++|+|+
T Consensus       239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             EEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence            9999999998888887655566777777665  5699999999999999999999988773     57788999999999


Q ss_pred             CcEEEEecCc------eEEeccCCc
Q 036585          272 SLMFVTGSSE------LSFWIPDLS  290 (304)
Q Consensus       272 ~~~l~s~~~d------~~iw~~~~~  290 (304)
                      +.+|++|+.|      +++||++.+
T Consensus       317 ~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         317 KLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCEEEEEeCCCCCeeEEEEEeCCCC
Confidence            9999999866      667777653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-36  Score=238.80  Aligned_cols=282  Identities=18%  Similarity=0.261  Sum_probs=215.3

Q ss_pred             cceeeeecceee-Ee-ecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEE
Q 036585            9 EDKVSLELSEEI-LQ-SMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRL   86 (304)
Q Consensus         9 ~~~~~~~~~~~~-i~-~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~v   86 (304)
                      ++..++++|... +. +.+++++||+|+.||+|+|||+.+++++.++.+|.++|.+++|+|+ ..|++++.   |+.|++
T Consensus         3 p~~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~---D~~i~i   78 (355)
T d1nexb2           3 PQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST---DRTVRV   78 (355)
T ss_dssp             CEEEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEET---TCCEEE
T ss_pred             CCcEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEec---cccccc
Confidence            356778888664 44 4678999999999999999999999999999999999999999985 58889988   999999


Q ss_pred             EEccCceeeeecccc--cccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEec--------------------
Q 036585           87 LSLHDNKYSRYFKGH--HDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQG--------------------  144 (304)
Q Consensus        87 wd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------------  144 (304)
                      |++...+.......+  ........+.+++.++++++.|+.|++||+++...........                    
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence            999988766555433  3345666778899999999999999999998765443221110                    


Q ss_pred             ---cce--eEecCCCeEEEecCCCeEEEEec---------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEE
Q 036585          145 ---RPA--AAYDDQGLVFGYEKGPLDIFSVG---------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLST  210 (304)
Q Consensus       145 ---~~~--~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  210 (304)
                         ...  ...+.+..+.+..++.+.+|++.         ++...+.++.++|++.++++++.|+.|++||++++..+..
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  238 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT  238 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             eccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccc
Confidence               011  11222334455666677776643         4667888999999999999999999999999999999888


Q ss_pred             EEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceE-EeCCCCcEEEEecCc-eEEeccC
Q 036585          211 YNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVI-KWAPGSLMFVTGSSE-LSFWIPD  288 (304)
Q Consensus       211 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~s~~~d-~~iw~~~  288 (304)
                      +.   .|...|.+++|++  ++|++++.||.|++||+++....  +..|...+.++ .+++++.++++|+++ ++||+++
T Consensus       239 ~~---~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~  311 (355)
T d1nexb2         239 LQ---GHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR  311 (355)
T ss_dssp             EC---CCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEEETTEEEEEETT
T ss_pred             cc---ccccccccccccc--ceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEEeCCEEEEEECC
Confidence            87   7889999999864  69999999999999999887643  44566666665 467788888888766 9999997


Q ss_pred             Cccc-c-ccccCCCC
Q 036585          289 LSKL-G-AYVGRNRG  301 (304)
Q Consensus       289 ~~~~-~-~~~~~~~g  301 (304)
                      ..++ . .+.+|...
T Consensus       312 tg~~~~~~~~~~~~~  326 (355)
T d1nexb2         312 SGKLVHANILKDADQ  326 (355)
T ss_dssp             TCCBCCSCTTTTCSE
T ss_pred             CCCEEEEEecCCCCC
Confidence            6553 3 34555543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-36  Score=235.80  Aligned_cols=239  Identities=15%  Similarity=0.231  Sum_probs=192.6

Q ss_pred             cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc-cccccEEEEEEcCCCCEEEEcccCCe
Q 036585           47 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRT  125 (304)
Q Consensus        47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~  125 (304)
                      |+..+.+.+|..+|++++|+|++++|++++.   |+.|++||+++++....+. .|...|.+++|+|++++ ++++.|+.
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~---Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~   77 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADA---EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDH   77 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcC---CCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceee
Confidence            5677889999999999999999999999998   9999999999999888774 68999999999999874 55667899


Q ss_pred             EEEEeCCcceeece---EEEe--ccceeEecCCC-eEEEecCCCeEEEEecC-----CCCCceEEEEecCCcEEEEeeCC
Q 036585          126 VLLWDQRAEKCQGL---LRVQ--GRPAAAYDDQG-LVFGYEKGPLDIFSVGG-----DISDANVVKFSNDGRLMLLTTME  194 (304)
Q Consensus       126 i~iwd~~~~~~~~~---~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d  194 (304)
                      +++|+.........   ....  ....+.+++++ .++....+.+.+|+...     ....+.+++|+|+++++++++.|
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  157 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD  157 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             EEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999865432211   1111  12245566665 34445556667765321     34567889999999999999999


Q ss_pred             CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCcee---eeeeccCCCCceEEeCCC
Q 036585          195 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEV---ASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       195 g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~i~~~~~~~~  271 (304)
                      |.|++||+++++.......  .|...|++++|+|++++|++++.|+.|++||+.++..+   ..+.+|..+|++++|+|+
T Consensus       158 g~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  235 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTI--VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD  235 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999988776543332  47889999999999999999999999999999877654   445678999999999999


Q ss_pred             CcEEEEecCc--eEEeccCCcc
Q 036585          272 SLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       272 ~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      +++|++++.|  +++|+++...
T Consensus       236 ~~~l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         236 NVRLATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             SSEEEEEETTSCEEEEETTCTT
T ss_pred             ccceEEEcCCCEEEEEECCCCC
Confidence            9999999998  9999987654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-36  Score=236.84  Aligned_cols=222  Identities=18%  Similarity=0.311  Sum_probs=196.3

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCC--cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTA--ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR   96 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~   96 (304)
                      ..+.++|+|++|++++.||.|++||+..  .+....+..|...+.+++|+|++..+++++.   |+.|++|++.+++...
T Consensus       101 ~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~~~~~~~~~~~~  177 (337)
T d1gxra_         101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS---DGNIAVWDLHNQTLVR  177 (337)
T ss_dssp             EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEE
T ss_pred             EEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccc
Confidence            3578999999999999999999999874  4556778889999999999999999999998   9999999999999999


Q ss_pred             ecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc-ceeEecCCCe--EEEecCCCeEEEEec---
Q 036585           97 YFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGL--VFGYEKGPLDIFSVG---  170 (304)
Q Consensus        97 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~---  170 (304)
                      ....|...|.+++|++++..+++++.|+.+++||+++++....+..... ..+.+++++.  +.+..++.+.+|++.   
T Consensus       178 ~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~  257 (337)
T d1gxra_         178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD  257 (337)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred             cccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccc
Confidence            9999999999999999999999999999999999999988776654433 2456777763  446678888888764   


Q ss_pred             -----CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEE
Q 036585          171 -----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAW  245 (304)
Q Consensus       171 -----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~  245 (304)
                           .|...|++++|+|++++|++++.||.|++||+.+++.+..+.    +...|.+++|+|++++|++|+.||.|+||
T Consensus       258 ~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~t~s~D~~I~vW  333 (337)
T d1gxra_         258 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             cccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc----CCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence                 467899999999999999999999999999999999888776    77899999999999999999999999999


Q ss_pred             ec
Q 036585          246 SV  247 (304)
Q Consensus       246 d~  247 (304)
                      |+
T Consensus       334 dl  335 (337)
T d1gxra_         334 EV  335 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.2e-35  Score=232.98  Aligned_cols=250  Identities=12%  Similarity=0.190  Sum_probs=202.9

Q ss_pred             cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeE
Q 036585           47 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTV  126 (304)
Q Consensus        47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  126 (304)
                      .+..++|++|.++|.+++|+|++++|++|+.   ||.|++||+.+++.+..+..|..+|.+++|+|+++++++++.|+.+
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~---Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i  121 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQ---DGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEET---TTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEEC---CCceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccccee
Confidence            3566789999999999999999999999998   9999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCcceeeceEEE--ec--cc-----------eeEecCCC-eEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEE
Q 036585          127 LLWDQRAEKCQGLLRV--QG--RP-----------AAAYDDQG-LVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLL  190 (304)
Q Consensus       127 ~iwd~~~~~~~~~~~~--~~--~~-----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  190 (304)
                      ++|+............  ..  ..           ......+. .................+...+....+.+.+.++++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            9999876543322211  11  10           11111111 112222333344444556778889999999999999


Q ss_pred             eeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee--eccCCCCceEEe
Q 036585          191 TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW--MSFDTEPPVIKW  268 (304)
Q Consensus       191 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~~~~~~i~~~~~  268 (304)
                      ++.|+.|++||+++++.+..+.   .|...|++++|+|++++|++|+.|+.|++||++..+.+..+  ..+..+|.+++|
T Consensus       202 ~~~d~~v~i~d~~~~~~~~~~~---~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~  278 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF  278 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             eecCceEEEEECCCCcEEEEEe---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEE
Confidence            9999999999999999988887   68899999999999999999999999999999988876655  456677999999


Q ss_pred             CCCCcEEEEecCc--eEEeccC-CccccccccCCCCC
Q 036585          269 APGSLMFVTGSSE--LSFWIPD-LSKLGAYVGRNRGC  302 (304)
Q Consensus       269 ~~~~~~l~s~~~d--~~iw~~~-~~~~~~~~~~~~g~  302 (304)
                      +|++++|++|+.|  +++|++. .+.+..+.+|...+
T Consensus       279 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V  315 (340)
T d1tbga_         279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV  315 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             CCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCE
Confidence            9999999999998  9999985 45567777776543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-35  Score=231.92  Aligned_cols=255  Identities=18%  Similarity=0.274  Sum_probs=213.9

Q ss_pred             EEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEc
Q 036585           41 LYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISG  120 (304)
Q Consensus        41 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  120 (304)
                      .|... .....+|++|.++|++++|+|++++|++++.   |++|+|||+.+++.+..+.+|...|.+++|+|++.+++++
T Consensus         2 ~w~p~-~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~---Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~   77 (317)
T d1vyhc1           2 EWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASE---DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC   77 (317)
T ss_dssp             CCCCC-SSCSCEEECCSSCEEEEEECSSSSEEEEEES---SSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ccCCC-CCccEEEcCCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccc
Confidence            45433 4556789999999999999999999999998   9999999999999999999999999999999999999999


Q ss_pred             ccCCeEEEEeCCcceeeceEEEeccc--eeEecCCC--eEEEecCCCeEEEEe---------cCCCCCceEEEEecCCcE
Q 036585          121 SLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQG--LVFGYEKGPLDIFSV---------GGDISDANVVKFSNDGRL  187 (304)
Q Consensus       121 ~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~  187 (304)
                      ..++.+..|+....+....+......  ...+.+++  .+....++.+.+|++         ..|...+.+++|+|++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (317)
T d1vyhc1          78 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL  157 (317)
T ss_dssp             ETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             ccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCE
Confidence            99999999998877665544332222  33444444  344555666666654         457888999999999999


Q ss_pred             EEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCC--------------------cEEEEecCCCcEEEEec
Q 036585          188 MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEG--------------------MFVISGSGDGSVHAWSV  247 (304)
Q Consensus       188 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--------------------~~l~~~~~dg~i~v~d~  247 (304)
                      |++++.|+.|++|++.+++....+.   .+...+.+++|+|++                    .++++++.|+.|++||+
T Consensus       158 l~~~~~d~~v~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  234 (317)
T d1vyhc1         158 IASCSNDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV  234 (317)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred             EEEEeCCCeEEEEeeccceeeEEEe---cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEEC
Confidence            9999999999999999999888877   677888888888754                    47889999999999999


Q ss_pred             CCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC-ccccccccCCCCC
Q 036585          248 RSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL-SKLGAYVGRNRGC  302 (304)
Q Consensus       248 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~-~~~~~~~~~~~g~  302 (304)
                      ++++++..+.+|..+|.+++|+|++++|++++.|  +++|++.. +.+..+.+|...+
T Consensus       235 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V  292 (317)
T d1vyhc1         235 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV  292 (317)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE
T ss_pred             CCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCE
Confidence            9999999999999999999999999999999988  99999864 4466777776544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-35  Score=239.15  Aligned_cols=214  Identities=11%  Similarity=0.106  Sum_probs=178.3

Q ss_pred             ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce--eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcc
Q 036585           57 KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK--YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAE  134 (304)
Q Consensus        57 ~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  134 (304)
                      ..+|+|++|+|++++|++++.   |+.|++||+.+++  .+..+++|.++|.+++|+|++++|++++.|++|++||++++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~---~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPN---NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECS---SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             CCCeEEEEECCCCCEEEEEeC---CCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc
Confidence            368999999999999999998   9999999998775  56778899999999999999999999999999999999876


Q ss_pred             eeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEE-Ee
Q 036585          135 KCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTY-NV  213 (304)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~  213 (304)
                      .....+.                           +.+|...|.+++|+|+++.|++++.|+.+++|++......... ..
T Consensus        84 ~~~~~~~---------------------------~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~  136 (371)
T d1k8kc_          84 TWKPTLV---------------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI  136 (371)
T ss_dssp             EEEEEEE---------------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             ccccccc---------------------------cccccccccccccccccccceeecccCcceeeeeeccccccccccc
Confidence            5543332                           2356778999999999999999999999999998776544333 23


Q ss_pred             CCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCC------------------ceeeeeeccCCCCceEEeCCCCcEE
Q 036585          214 KPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSG------------------KEVASWMSFDTEPPVIKWAPGSLMF  275 (304)
Q Consensus       214 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~------------------~~~~~~~~~~~~i~~~~~~~~~~~l  275 (304)
                      ...+...|.+++|+|++++|++|+.|+.|++||+...                  +.+.....|...|.+++|+|++++|
T Consensus       137 ~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  216 (371)
T d1k8kc_         137 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV  216 (371)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred             ccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccc
Confidence            3457889999999999999999999999999998643                  2345557788999999999999999


Q ss_pred             EEecCc--eEEeccCCc-cccccccCCC
Q 036585          276 VTGSSE--LSFWIPDLS-KLGAYVGRNR  300 (304)
Q Consensus       276 ~s~~~d--~~iw~~~~~-~~~~~~~~~~  300 (304)
                      ++++.|  +++|++... .+..+..|..
T Consensus       217 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         217 AWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             cccccCCcceEEeeecccceeeeecccc
Confidence            999988  999998653 3445555543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-34  Score=234.03  Aligned_cols=268  Identities=17%  Similarity=0.269  Sum_probs=206.5

Q ss_pred             EEEeeCCCeEEEEecCCccee----eeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc------
Q 036585           30 LVTASDDESIRLYDVTAATCL----KTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK------   99 (304)
Q Consensus        30 l~~~~~d~~i~vw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~------   99 (304)
                      .+....++...+|+....+..    ....+|.+.|++++|+|+|++|++|+    |+.|+|||+.+++.+..+.      
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~----d~~i~iW~~~~~~~~~~~~~~~~~~  106 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC----NKTTQVYRVSDGSLVARLSDDSAAN  106 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC----BSCEEEEETTTCCEEEEECC-----
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe----CCeEEEEEecccceEeeeccccccc
Confidence            345677788999997654322    23336999999999999999999875    8899999999887765543      


Q ss_pred             ------------cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCC--eEEEecCCC
Q 036585          100 ------------GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQG--LVFGYEKGP  163 (304)
Q Consensus       100 ------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~  163 (304)
                                  .|...|.+++|+|++++|++|+.||.|++||...++.......+...  ...+.+++  .+.+..++.
T Consensus       107 ~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  186 (388)
T d1erja_         107 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT  186 (388)
T ss_dssp             ------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccccccccccee
Confidence                        35667999999999999999999999999999988877666543333  34555554  444666777


Q ss_pred             eEEEEecC--------CCCCceEEEEe-cCCcEEEEeeCCCeEEEEEcCCCceeEEEEe----CCCCCCcceEEEEcCCC
Q 036585          164 LDIFSVGG--------DISDANVVKFS-NDGRLMLLTTMEGHIHVLDSFRGTLLSTYNV----KPVSRNSTLEASFSPEG  230 (304)
Q Consensus       164 ~~~~~~~~--------~~~~v~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~~s~~~  230 (304)
                      +.+|+...        +......+.+. +++++|++++.||.|++||.+++.....+..    ...|...|++++|+|++
T Consensus       187 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  266 (388)
T d1erja_         187 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG  266 (388)
T ss_dssp             EEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred             eeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC
Confidence            88887653        22334444554 5889999999999999999999887776642    23467899999999999


Q ss_pred             cEEEEecCCCcEEEEecCCCce------------eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC-cccccc
Q 036585          231 MFVISGSGDGSVHAWSVRSGKE------------VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL-SKLGAY  295 (304)
Q Consensus       231 ~~l~~~~~dg~i~v~d~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~-~~~~~~  295 (304)
                      ++|++++.||.|++||+++++.            ......|...|.+++|+|++++|++|+.|  +++|++.. +.+..+
T Consensus       267 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l  346 (388)
T d1erja_         267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML  346 (388)
T ss_dssp             SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            9999999999999999976543            33446788999999999999999999998  99999865 445677


Q ss_pred             ccCCCC
Q 036585          296 VGRNRG  301 (304)
Q Consensus       296 ~~~~~g  301 (304)
                      .+|...
T Consensus       347 ~~H~~~  352 (388)
T d1erja_         347 QGHRNS  352 (388)
T ss_dssp             ECCSSC
T ss_pred             eCCCCC
Confidence            777654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-35  Score=231.34  Aligned_cols=253  Identities=13%  Similarity=0.078  Sum_probs=204.1

Q ss_pred             ecceeeEeecccCcEEEEeeCCC-eEEEEecCCc--ceeeeecccc-cceeEEEEcc--CCCeEEEEecCCCCCceEEEE
Q 036585           15 ELSEEILQSMEVGIYLVTASDDE-SIRLYDVTAA--TCLKTINSKK-YGVDLVCFTS--HPTTVIYSSKNGWDESLRLLS   88 (304)
Q Consensus        15 ~~~~~~i~~~~~~~~l~~~~~d~-~i~vw~~~~~--~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~~~~d~~i~vwd   88 (304)
                      +.+...+.+.|+|+.|+.++.+. .|+.|+....  ..+..+.+|. ..|++++|+|  ++.+|++++.   ||+|++||
T Consensus        17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~---Dg~i~iWd   93 (325)
T d1pgua1          17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE---SGKVIVWG   93 (325)
T ss_dssp             TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET---TSEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeC---CCCEEEee
Confidence            44555688999999999887554 3566765433  3456677774 6799999998  5678889988   99999999


Q ss_pred             ccCceeee--------ecccccccEEEEEEcCCCCEEEEcc--cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585           89 LHDNKYSR--------YFKGHHDRVVLLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG  158 (304)
Q Consensus        89 ~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (304)
                      +..++...        .+..|.++|.+++|+++++++++++  .++.+++|+.++++....+                  
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------  155 (325)
T d1pgua1          94 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV------------------  155 (325)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC------------------
T ss_pred             ecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee------------------
Confidence            97654332        2345788999999999999888765  4678999999887655443                  


Q ss_pred             ecCCCeEEEEecCCCCCceEEEEecCCcE-EEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC-CcEEEEe
Q 036585          159 YEKGPLDIFSVGGDISDANVVKFSNDGRL-MLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-GMFVISG  236 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~  236 (304)
                                 .+|...|.+++|+|++.+ +++++.|+.+++||....+..........+...|++++|+|+ +.+|+++
T Consensus       156 -----------~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~  224 (325)
T d1pgua1         156 -----------SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV  224 (325)
T ss_dssp             -----------CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred             -----------eecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccc
Confidence                       367789999999999875 677899999999999988888877766677888999999996 6889999


Q ss_pred             cCCCcEEEEecCCCceeeeeeccCCCCceEEeC---CCCcEEEEecCc--eEEeccCCcc-ccccccCC
Q 036585          237 SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWA---PGSLMFVTGSSE--LSFWIPDLSK-LGAYVGRN  299 (304)
Q Consensus       237 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~s~~~d--~~iw~~~~~~-~~~~~~~~  299 (304)
                      +.|+.|++||+++++.+..+.+|..++.++.|+   |++++|++++.|  ++||+++..+ ++.+..+.
T Consensus       225 ~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         225 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             ccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC
Confidence            999999999999999999999999988887777   789999999998  9999997654 34444443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-33  Score=214.71  Aligned_cols=251  Identities=16%  Similarity=0.290  Sum_probs=193.7

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      +..+.++|++||+|+.||+|+|||+++++++.++.+|...|.+++|  ++++|++++.   |+.|++|++..+.......
T Consensus        18 V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~---D~~i~~~~~~~~~~~~~~~   92 (293)
T d1p22a2          18 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS---DSTVRVWDVNTGEMLNTLI   92 (293)
T ss_dssp             EEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEET---TSCEEEEESSSCCEEEEEC
T ss_pred             EEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccc---ccccccccccccccccccc
Confidence            3345778999999999999999999999999999999999999887  6789999998   9999999999988776665


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEe---ccc--eeEecCCCeEEEecCCCeEEEEec----
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ---GRP--AAAYDDQGLVFGYEKGPLDIFSVG----  170 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~----  170 (304)
                      .+.....  .+.+....++++..++.+++||.............   ...  ...+.+........++.+.+|+..    
T Consensus        93 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~  170 (293)
T d1p22a2          93 HHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF  170 (293)
T ss_dssp             CCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE
T ss_pred             ccccccc--cccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcE
Confidence            4444333  34456668999999999999998876544332221   111  223344444555556666666543    


Q ss_pred             -----CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEE
Q 036585          171 -----GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAW  245 (304)
Q Consensus       171 -----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~  245 (304)
                           ++...+..+.+  ++..+++++.||.|++||+++.+.+..+.   .+...+.  .+++++.+|++++.||.|++|
T Consensus       171 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~--~~~~~~~~l~sg~~dg~i~iw  243 (293)
T d1p22a2         171 VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVR--CIRFDNKRIVSGAYDGKIKVW  243 (293)
T ss_dssp             EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEE--EEECCSSEEEEEETTSCEEEE
T ss_pred             EEEEcccccccccccC--CCCeEEEecCCCEEEEEecccceeeeeec---ccceeee--eccccceEEEEEcCCCEEEEE
Confidence                 44555555555  56789999999999999999998888776   5666665  456788899999999999999


Q ss_pred             ecCC---------CceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEec
Q 036585          246 SVRS---------GKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWI  286 (304)
Q Consensus       246 d~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~  286 (304)
                      |+..         ..++..+.+|.++|++++|+  +.+|++++.|  ++|||
T Consensus       244 d~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         244 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             ECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            9753         23567788999999999994  5689999999  99996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-33  Score=219.40  Aligned_cols=258  Identities=13%  Similarity=0.155  Sum_probs=200.2

Q ss_pred             cceeeeecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585            9 EDKVSLELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   88 (304)
Q Consensus         9 ~~~~~~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd   88 (304)
                      +....+++|...|.+..... |++|+.||+|++||+.++     ...|...|.+++++++. .+++++.   |+++++|+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~-l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~---D~~v~~w~   73 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP-LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISW---DDTLKVNG   73 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT-TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEET---TTEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc-EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEee---cccccccc
Confidence            44567899999888877765 899999999999998764     35788999999998765 5677877   99999999


Q ss_pred             ccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccc-eeEecCCCeEEEecC-CCeEE
Q 036585           89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRP-AAAYDDQGLVFGYEK-GPLDI  166 (304)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~  166 (304)
                      +...+       ....+..+.+++++..++++ .++.+.+|+..++.....+...... .+..+.+..+++..+ +.+++
T Consensus        74 ~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~  145 (287)
T d1pgua2          74 ITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQV  145 (287)
T ss_dssp             EEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEE
T ss_pred             ccccc-------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeee
Confidence            86543       23456778888888666665 4567889998888877766544332 223333344455554 35777


Q ss_pred             EEec----------CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCC-------
Q 036585          167 FSVG----------GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPE-------  229 (304)
Q Consensus       167 ~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~-------  229 (304)
                      |++.          .+...+++++|+|++++|++++.||.|++||+.+++.....  ...|...|.+++|+|+       
T Consensus       146 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~~~~~  223 (287)
T d1pgua2         146 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR--WAFRTSKINAISWKPAEKGANEE  223 (287)
T ss_dssp             EETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC--SCCCSSCEEEEEECCCC------
T ss_pred             eeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc--ccccccccceeeecccccccccc
Confidence            7643          35678999999999999999999999999999988765432  2268889999999874       


Q ss_pred             ---CcEEEEecCCCcEEEEecCC-CceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEecc
Q 036585          230 ---GMFVISGSGDGSVHAWSVRS-GKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIP  287 (304)
Q Consensus       230 ---~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~  287 (304)
                         +.+|++|+.|+.|++||+++ .+.+..+.+|...|++++|+|++. |++++.|  +++|++
T Consensus       224 ~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV  286 (287)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             cCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCCeEEEEEE
Confidence               46899999999999999977 556777789999999999999875 7777778  999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.9e-33  Score=223.95  Aligned_cols=272  Identities=14%  Similarity=0.147  Sum_probs=188.7

Q ss_pred             eeecceeeEee-cccCcEEEEeeCCCeEEEEecCCcce------eeeecccccceeEEEE------cc-CCCeEEEEecC
Q 036585           13 SLELSEEILQS-MEVGIYLVTASDDESIRLYDVTAATC------LKTINSKKYGVDLVCF------TS-HPTTVIYSSKN   78 (304)
Q Consensus        13 ~~~~~~~~i~~-~~~~~~l~~~~~d~~i~vw~~~~~~~------~~~~~~~~~~v~~~~~------~~-~~~~l~~~~~~   78 (304)
                      ..++|...|.. ...+++++|+|.|++|+|||..+.+.      ......|...+..+..      +. +...+++++. 
T Consensus         9 ~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-   87 (393)
T d1sq9a_           9 AGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF-   87 (393)
T ss_dssp             ESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET-
T ss_pred             cCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC-
Confidence            34566665433 34578999999999999999765432      1222233333332222      11 2345667777 


Q ss_pred             CCCCceEEEEccCceeeee----------cccccccEEEEEEcCC-----CCEEEEcccCCeEEEEeCCcceeece-EEE
Q 036585           79 GWDESLRLLSLHDNKYSRY----------FKGHHDRVVLLSLCSS-----KDCFISGSLDRTVLLWDQRAEKCQGL-LRV  142 (304)
Q Consensus        79 ~~d~~i~vwd~~~~~~~~~----------~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~  142 (304)
                        |+.|++|++........          ...+...+..++|.++     +.++++++.||.+++|++........ ...
T Consensus        88 --dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          88 --SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             --TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             --CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence              99999999865432211          1234566788888765     35789999999999999854321110 000


Q ss_pred             eccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC---CCCCC
Q 036585          143 QGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK---PVSRN  219 (304)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~~  219 (304)
                      ........            .........+...+.+++|+|++ +|++|+.||+|++||+++++.+..+...   ..|..
T Consensus       166 ~~~~~~~~------------~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~  232 (393)
T d1sq9a_         166 NWSPTLEL------------QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN  232 (393)
T ss_dssp             CCCCEEEE------------EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred             eeccceec------------ccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence            00000000            00001112345668899999998 7899999999999999999988777632   25788


Q ss_pred             cceEEEEcCCCcEEEEecCCCc---EEEEecCCCceeeee-------------eccCCCCceEEeCCCCcEEEEecCc--
Q 036585          220 STLEASFSPEGMFVISGSGDGS---VHAWSVRSGKEVASW-------------MSFDTEPPVIKWAPGSLMFVTGSSE--  281 (304)
Q Consensus       220 ~i~~~~~s~~~~~l~~~~~dg~---i~v~d~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~l~s~~~d--  281 (304)
                      +|++++|+|+|++|++|+.|++   |++||+++++++..+             .+|...|++++|+|++++|++++.|  
T Consensus       233 ~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~  312 (393)
T d1sq9a_         233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK  312 (393)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCE
Confidence            9999999999999999998874   999999998877665             3799999999999999999999999  


Q ss_pred             eEEeccCC-ccccccccCCC
Q 036585          282 LSFWIPDL-SKLGAYVGRNR  300 (304)
Q Consensus       282 ~~iw~~~~-~~~~~~~~~~~  300 (304)
                      ++||+++. +.+..+.+|..
T Consensus       313 v~vWd~~~g~~~~~l~gH~~  332 (393)
T d1sq9a_         313 LRFWDVKTKERITTLNMHCD  332 (393)
T ss_dssp             EEEEETTTTEEEEEEECCGG
T ss_pred             EEEEECCCCCEEEEECCcCC
Confidence            99999865 44567777754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-32  Score=216.56  Aligned_cols=268  Identities=13%  Similarity=0.103  Sum_probs=197.9

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCccee---eeecccccceeEEEEccCCC-eEEEEecCCCCCceEEEEccCcee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCL---KTINSKKYGVDLVCFTSHPT-TVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      ..+.|+|++++||+|+.||+|+|||++++...   ....+|..+|.+++|+|++. .|++++.   |+.|++|++.....
T Consensus        15 ~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~---d~~v~~w~~~~~~~   91 (342)
T d1yfqa_          15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV---QGEILKVDLIGSPS   91 (342)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET---TSCEEEECSSSSSS
T ss_pred             EEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccc---ccceeeeecccccc
Confidence            35789999999999999999999999765443   23336899999999998754 6788887   99999999988776


Q ss_pred             eeecccccc-cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--------c--eeEecCCCeEEEecCCC
Q 036585           95 SRYFKGHHD-RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--------P--AAAYDDQGLVFGYEKGP  163 (304)
Q Consensus        95 ~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~  163 (304)
                      ......+.. ......+.++...+++++.++.+++||++.............        .  ......+..+.+..++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  171 (342)
T d1yfqa_          92 FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQ  171 (342)
T ss_dssp             EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTE
T ss_pred             cccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCc
Confidence            665554443 344555667888999999999999999987655444332211        1  22334455667778888


Q ss_pred             eEEEEecCCC------------CCceEEEE-ecCCcEEEEeeCCCeEEEEEcCCCcee------EEEE------eCCCCC
Q 036585          164 LDIFSVGGDI------------SDANVVKF-SNDGRLMLLTTMEGHIHVLDSFRGTLL------STYN------VKPVSR  218 (304)
Q Consensus       164 ~~~~~~~~~~------------~~v~~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~------~~~~------~~~~~~  218 (304)
                      +.+|++....            ....+..+ .+++..+++++.||.+.+|+.......      ..+.      ....+.
T Consensus       172 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
T d1yfqa_         172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA  251 (342)
T ss_dssp             EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC
T ss_pred             EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccc
Confidence            9999875432            22333343 456778999999999999997643211      1111      112456


Q ss_pred             CcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          219 NSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       219 ~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      ..+++++|+|++++|++|+.||.|++||+++++.+..+..+ ..+..++|+|++++|++++.|  .++|..-.+
T Consensus       252 ~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~  324 (342)
T d1yfqa_         252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAIDQ  324 (342)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSSCT
T ss_pred             ccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeeeCC
Confidence            67899999999999999999999999999999998887543 456678889999999888777  777765443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.9e-33  Score=223.38  Aligned_cols=232  Identities=13%  Similarity=0.129  Sum_probs=181.4

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeee----------cccccceeEEEEccCC-----CeEEEEecCCCCCceEEEEccC
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTI----------NSKKYGVDLVCFTSHP-----TTVIYSSKNGWDESLRLLSLHD   91 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~----------~~~~~~v~~~~~~~~~-----~~l~~~~~~~~d~~i~vwd~~~   91 (304)
                      +.++++++.||.|++|++........+          ..+...+..++|.++.     .++++++.   |+.+++|++..
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---dg~i~vw~~~~  155 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV---KGTTYIWKFHP  155 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET---TSCEEEEEEES
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcC---CCcEEEEEeec
Confidence            467889999999999997644322111          1244567778887754     56788887   99999999853


Q ss_pred             ce------------------eeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCC
Q 036585           92 NK------------------YSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQ  153 (304)
Q Consensus        92 ~~------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  153 (304)
                      ..                  .......+...+.+++|+|++ +|++|+.|++|++||+++++....+.....        
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~--------  226 (393)
T d1sq9a_         156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHS--------  226 (393)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---------
T ss_pred             CCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccc--------
Confidence            21                  111222345668899999987 899999999999999999887665543211        


Q ss_pred             CeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCC---eEEEEEcCCCceeEEEEe----------CCCCCCc
Q 036585          154 GLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNV----------KPVSRNS  220 (304)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~----------~~~~~~~  220 (304)
                                     +.+|...|++++|+|+|++|++|+.|+   .|++||+++++.+..+..          ..+|...
T Consensus       227 ---------------l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~  291 (393)
T d1sq9a_         227 ---------------MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW  291 (393)
T ss_dssp             -----------------CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC
T ss_pred             ---------------cccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCc
Confidence                           236888999999999999999999887   499999999988877642          1258889


Q ss_pred             ceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCc----eEEeCCCCcEEEEecCc-eEEe
Q 036585          221 TLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPP----VIKWAPGSLMFVTGSSE-LSFW  285 (304)
Q Consensus       221 i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~----~~~~~~~~~~l~s~~~d-~~iw  285 (304)
                      |++++|+|++++|++|+.|++|++||+++++++.++.+|...|.    .++|+|++..+++++.. ++.|
T Consensus       292 V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (393)
T d1sq9a_         292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL  361 (393)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE
T ss_pred             eeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEEC
Confidence            99999999999999999999999999999999999999988875    58899999988766644 4443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-30  Score=205.89  Aligned_cols=230  Identities=17%  Similarity=0.267  Sum_probs=187.9

Q ss_pred             eeeecccccce-eEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEE
Q 036585           50 LKTINSKKYGV-DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLL  128 (304)
Q Consensus        50 ~~~~~~~~~~v-~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  128 (304)
                      ..+|++|...| .|++  +++++|++|+.   |++|+|||+.+++.+..+.+|.++|.+++|+|+ .+|++++.|+.|++
T Consensus         5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~---Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~i   78 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQ--FEDNYVITGAD---DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRV   78 (355)
T ss_dssp             EEEEECCSSSCEEEEE--EETTEEEEEET---TTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEE
T ss_pred             cEEECCcCCCcEEEEE--ECCCEEEEEeC---CCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccc
Confidence            46789998876 5554  57889999998   999999999999999999999999999999985 58999999999999


Q ss_pred             EeCCcceeeceEEEeccc----eeEecCCC--eEEEecCCCeEEEEecCCC-----------------------------
Q 036585          129 WDQRAEKCQGLLRVQGRP----AAAYDDQG--LVFGYEKGPLDIFSVGGDI-----------------------------  173 (304)
Q Consensus       129 wd~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------------------------  173 (304)
                      |++...+...........    .....+++  .+.+..++.+.+|++....                             
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence            999988766554333222    22334444  3446677888888765311                             


Q ss_pred             -CCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585          174 -SDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       174 -~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  252 (304)
                       .......+.+++++++++..|+.|++||+++++.+....   .+...+.++.|+|+++++++++.|+.|++||++++..
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  235 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL  235 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE
T ss_pred             eccccccccccccceeeeecccceeeeeecccccceeeee---ccccccccccccccceeeecccccceEEeeecccccc
Confidence             011223456788999999999999999999998887776   6778899999999999999999999999999999999


Q ss_pred             eeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          253 VASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       253 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      +..+.+|...|.+++|++  ++|++++.|  +++|+.+..
T Consensus       236 ~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         236 MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTC
T ss_pred             cccccccccccccccccc--ceeeeeeccccccccccccc
Confidence            999999999999999975  689999998  999988643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-30  Score=206.15  Aligned_cols=237  Identities=19%  Similarity=0.316  Sum_probs=180.8

Q ss_pred             EecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcc
Q 036585           42 YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGS  121 (304)
Q Consensus        42 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  121 (304)
                      |+..+.++...+++|.+.|.+ +++++|++|++|+.   |++|+|||+.+++++..+.+|...|.+++|+|+  +|++++
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~---Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s   74 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSD---DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGS   74 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEET---TSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEE
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeC---CCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccce
Confidence            566677888899999999865 46778999999998   999999999999999999999999999999874  899999


Q ss_pred             cCCeEEEEeCCcceeeceEEEeccc------------------------------------------eeEecCCCeEEEe
Q 036585          122 LDRTVLLWDQRAEKCQGLLRVQGRP------------------------------------------AAAYDDQGLVFGY  159 (304)
Q Consensus       122 ~dg~i~iwd~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~  159 (304)
                      .|+.+++|+................                                          .........+.+.
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA  154 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred             ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec
Confidence            9999999998765443221110000                                          0111222234456


Q ss_pred             cCCCeEEEEecCC-------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcE
Q 036585          160 EKGPLDIFSVGGD-------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMF  232 (304)
Q Consensus       160 ~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  232 (304)
                      .++.+.+|+....       ........+++++.++++++.||.|++||++.++.+..+.   .|...+.+++++  +++
T Consensus       155 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~--~~~  229 (342)
T d2ovrb2         155 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT---GHQSLTSGMELK--DNI  229 (342)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC---CCCSCEEEEEEE--TTE
T ss_pred             CCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEec---ccccceeEEecC--CCE
Confidence            6677777765421       1233445666789999999999999999999999888877   677888877765  469


Q ss_pred             EEEecCCCcEEEEecCCCceeeeeec---cCCCCceEEeCCCCcEEEEecCc--eEEeccCCcc
Q 036585          233 VISGSGDGSVHAWSVRSGKEVASWMS---FDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLSK  291 (304)
Q Consensus       233 l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~~  291 (304)
                      |++++.|+.|++||+...+....+..   |...+.++.+  ++.++++|+.|  +++|+++..+
T Consensus       230 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~  291 (342)
T d2ovrb2         230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGE  291 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCC
Confidence            99999999999999999888777654   4455555555  45689999998  9999986543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.98  E-value=1.7e-30  Score=207.34  Aligned_cols=189  Identities=12%  Similarity=0.066  Sum_probs=156.0

Q ss_pred             Eeecc-cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           21 LQSME-VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        21 i~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      -.|+| ||+++|+++. |.|.+||+++++.++.  .|...|.+++|+||++.|++++... +..|++||+++++.. .+.
T Consensus         8 ~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~-g~~v~v~d~~~~~~~-~~~   82 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTRE-GDFLGIYDYRTGKAE-KFE   82 (360)
T ss_dssp             EEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETT-EEEEEEEETTTCCEE-ECC
T ss_pred             ccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCC-CCEEEEEECCCCcEE-Eee
Confidence            46898 9999999875 7899999988876653  5888999999999999999877621 247999999987654 566


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEE
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVV  179 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  179 (304)
                      .|...|.+++|+|++++|++++.++.+++|++.+++....+.                             .+...+.++
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~  133 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-----------------------------SREAMITDF  133 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----------------------------CSSSCCCCE
T ss_pred             CCCceEEeeeecccccccceeccccccccccccccceeeeee-----------------------------cccccccch
Confidence            799999999999999999999999999999999887665544                             455678889


Q ss_pred             EEecCCcEEEEee----------CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEec
Q 036585          180 KFSNDGRLMLLTT----------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSV  247 (304)
Q Consensus       180 ~~~~~~~~l~~~~----------~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~  247 (304)
                      +|+|+|++|+.+.          .++.+++||+.+++......    +...+..++|+|||++|++++.++.+++||.
T Consensus       134 ~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT----ENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC----SSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             hhccceeeeeeeccccccceeeccccceeeeccccCceeeecc----cccccccccccCCCCEEEEEeCCCceEcccc
Confidence            9999999998643          34579999998876554433    6677888999999999999999988888875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-29  Score=200.17  Aligned_cols=247  Identities=11%  Similarity=0.077  Sum_probs=183.0

Q ss_pred             ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee---eecccccccEEEEEEcCCC-CEEEEcccC
Q 036585           48 TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS---RYFKGHHDRVVLLSLCSSK-DCFISGSLD  123 (304)
Q Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  123 (304)
                      +.++..++|.+.|++|+|+|++++|++++.   |++|+|||+.++...   ....+|..+|.+++|+|++ .+|++|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~---Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d   78 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSW---DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEET---TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEEC---CCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence            567778899999999999999999999998   999999999765432   2233699999999999864 589999999


Q ss_pred             CeEEEEeCCcceeeceEEEeccc---e--eEecCCCeEEEecCCCeEEEEecC---------------CCCCceEEEEec
Q 036585          124 RTVLLWDQRAEKCQGLLRVQGRP---A--AAYDDQGLVFGYEKGPLDIFSVGG---------------DISDANVVKFSN  183 (304)
Q Consensus       124 g~i~iwd~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~  183 (304)
                      +.|++|++...............   .  ........+....++.+.+|++..               .......+.+.+
T Consensus        79 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence            99999999877655443322211   1  122334455566777788886532               123345667788


Q ss_pred             CCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcC-CCcEEEEecCCCcEEEEecCCCcee---------
Q 036585          184 DGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSP-EGMFVISGSGDGSVHAWSVRSGKEV---------  253 (304)
Q Consensus       184 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~---------  253 (304)
                      .+..+++++.|+.|++||++..+................+..+.+ ++..+++++.||.+.+|+.......         
T Consensus       159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~  238 (342)
T d1yfqa_         159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence            899999999999999999988776555443334555555555555 6778999999999999998643221         


Q ss_pred             ------eeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc-ccccccc
Q 036585          254 ------ASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS-KLGAYVG  297 (304)
Q Consensus       254 ------~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~-~~~~~~~  297 (304)
                            .....|...+++++|+|++++|++|+.|  +++|+++.. ++.++..
T Consensus       239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~  291 (342)
T d1yfqa_         239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecC
Confidence                  1123566778999999999999999999  999999754 3455543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-29  Score=195.81  Aligned_cols=236  Identities=17%  Similarity=0.190  Sum_probs=173.6

Q ss_pred             cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeE
Q 036585           47 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTV  126 (304)
Q Consensus        47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  126 (304)
                      .++++++++|..+|.+++|+|    |++++.   ||+|++||+.++.     ..|...|.++.++++. .+++++.|+++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~---Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s~D~~v   69 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSY---DGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSISWDDTL   69 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEET---TSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEETTTEE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeC---CCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEeecccc
Confidence            578899999999999999987    899998   9999999987653     5799999999998765 67899999999


Q ss_pred             EEEeCCcceeeceEEEeccceeEecCCCeE-EEecCCCeEEEEecCC------CCCceEEEEecCCcEEEEeeCCC-eEE
Q 036585          127 LLWDQRAEKCQGLLRVQGRPAAAYDDQGLV-FGYEKGPLDIFSVGGD------ISDANVVKFSNDGRLMLLTTMEG-HIH  198 (304)
Q Consensus       127 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg-~i~  198 (304)
                      ++|++...+.....     ......+++.. +......+.++.....      .......++++++..+++++.++ .++
T Consensus        70 ~~w~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~  144 (287)
T d1pgua2          70 KVNGITKHEFGSQP-----KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ  144 (287)
T ss_dssp             EETTEEEEECSSCE-----EEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred             ccccccccccccce-----eeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceee
Confidence            99998765432211     12223333322 2222222333322110      11223456788888888888775 699


Q ss_pred             EEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee-eeeccCCCCceEEeCCC------
Q 036585          199 VLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA-SWMSFDTEPPVIKWAPG------  271 (304)
Q Consensus       199 ~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~------  271 (304)
                      +|++...+....+.  ..+...+++++|+|++.+|++|+.||.|++||+.+++... .+.+|..+|.+++|+|.      
T Consensus       145 ~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  222 (287)
T d1pgua2         145 VFKLSDLEVSFDLK--TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE  222 (287)
T ss_dssp             EEETTEEEEEEECS--SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----
T ss_pred             eeeccccceeeeee--eccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccccccc
Confidence            99987655444332  2467889999999999999999999999999999887654 46789999999999874      


Q ss_pred             ----CcEEEEecCc--eEEeccCC--ccccccccCCCCC
Q 036585          272 ----SLMFVTGSSE--LSFWIPDL--SKLGAYVGRNRGC  302 (304)
Q Consensus       272 ----~~~l~s~~~d--~~iw~~~~--~~~~~~~~~~~g~  302 (304)
                          +.+|++|+.|  ++||+++.  +.+..+.+|..++
T Consensus       223 ~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V  261 (287)
T d1pgua2         223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV  261 (287)
T ss_dssp             -CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE
T ss_pred             ccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCe
Confidence                4689999999  99999854  3455566777654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.7e-28  Score=186.65  Aligned_cols=224  Identities=17%  Similarity=0.310  Sum_probs=176.8

Q ss_pred             eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEE
Q 036585           49 CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLL  128 (304)
Q Consensus        49 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  128 (304)
                      .+.....|...|.|++|  ++++|++|+.   |++|+|||+.+++++..+.+|.+.|.+++|  ++++|++++.|+.|++
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~---Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~   79 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLR---DNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV   79 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEES---SSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeC---CCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccc
Confidence            34455667788988765  8999999998   999999999999999999999999999887  5779999999999999


Q ss_pred             EeCCcceeeceEEEeccceeEe--cCCCeEEEecCCCeEEEEec------------CCCCCceEEEEecCCcEEEEeeCC
Q 036585          129 WDQRAEKCQGLLRVQGRPAAAY--DDQGLVFGYEKGPLDIFSVG------------GDISDANVVKFSNDGRLMLLTTME  194 (304)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~d  194 (304)
                      |++..+................  .....+.....+.+.+|+..            .|...+..+.+  ....+++++.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d  157 (293)
T d1p22a2          80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD  157 (293)
T ss_dssp             EESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccccccccee--cccccccccCC
Confidence            9999887665554433332222  22334555666666666554            34455555555  45578889999


Q ss_pred             CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcE
Q 036585          195 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLM  274 (304)
Q Consensus       195 g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  274 (304)
                      +.|++||+++++.+..+.   .+...+..+.++  +.++++++.||.|++||+++.+.+..+.+|...+..  +++++.+
T Consensus       158 ~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~  230 (293)
T d1p22a2         158 RTIKVWNTSTCEFVRTLN---GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKR  230 (293)
T ss_dssp             SEEEEEETTTCCEEEEEE---CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSE
T ss_pred             CceeeecCCCCcEEEEEc---ccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceE
Confidence            999999999999998888   567777777664  568999999999999999999999988888887765  5567889


Q ss_pred             EEEecCc--eEEeccC
Q 036585          275 FVTGSSE--LSFWIPD  288 (304)
Q Consensus       275 l~s~~~d--~~iw~~~  288 (304)
                      |++++.|  +++|++.
T Consensus       231 l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         231 IVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             EEEEETTSCEEEEEHH
T ss_pred             EEEEcCCCEEEEEECC
Confidence            9999998  9999864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=3.2e-28  Score=198.70  Aligned_cols=263  Identities=12%  Similarity=0.062  Sum_probs=183.9

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeee-----ecccc
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSR-----YFKGH  101 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~-----~~~~~  101 (304)
                      +.++++.+.||+|+|||+.+++.+.++..|. .+..++|+|||+++++++.   |+.|++||+.+++...     ...+|
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~---d~~v~vwd~~t~~~~~~~~i~~~~~~  107 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGR---DARIDMIDLWAKEPTKVAEIKIGIEA  107 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeC---CCCEEEEEccCCceeEEEEEeCCCCC
Confidence            3356788899999999999999999999875 6899999999999999988   9999999999886432     23367


Q ss_pred             cccEEEEEEcCCCCEEEE-cccCCeEEEEeCCcceeeceEEEeccc-------------eeEecCCCeEEEe---cCCCe
Q 036585          102 HDRVVLLSLCSSKDCFIS-GSLDRTVLLWDQRAEKCQGLLRVQGRP-------------AAAYDDQGLVFGY---EKGPL  164 (304)
Q Consensus       102 ~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~---~~~~~  164 (304)
                      .+.+.+++|+|||+++++ +..++.+++||..++............             .+..++++..+..   ..+.+
T Consensus       108 ~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i  187 (426)
T d1hzua2         108 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  187 (426)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             cceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            777888899999998755 457899999999988776655432211             1223333322111   11111


Q ss_pred             EEEE----------ecCCCCCceEEEEecCCcEEEEeeC-CCeEEEEEcCCCceeEEEEe--------------------
Q 036585          165 DIFS----------VGGDISDANVVKFSNDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNV--------------------  213 (304)
Q Consensus       165 ~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~--------------------  213 (304)
                      ..+.          .-.+...+..+.|+|++++++++.. +..+.+++..+++.......                    
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (426)
T d1hzua2         188 LLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPV  267 (426)
T ss_dssp             EEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEE
T ss_pred             EEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCce
Confidence            1111          1123455677889999887777653 44566666655443322210                    


Q ss_pred             -------------------------------CCCCCCcceEEEEcCCCcEEEE-------ecCCCcEEEEecCCCceeee
Q 036585          214 -------------------------------KPVSRNSTLEASFSPEGMFVIS-------GSGDGSVHAWSVRSGKEVAS  255 (304)
Q Consensus       214 -------------------------------~~~~~~~i~~~~~s~~~~~l~~-------~~~dg~i~v~d~~~~~~~~~  255 (304)
                                                     ..+|...+..++|+||+++|++       ++.+++|+|||+++++...+
T Consensus       268 ~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~  347 (426)
T d1hzua2         268 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ  347 (426)
T ss_dssp             EEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred             EEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeE
Confidence                                           0135666888999999999995       45678999999999887655


Q ss_pred             e---------eccCCCCceEEeCCCCcEEEEe-----cCc--eEEeccCCcccc
Q 036585          256 W---------MSFDTEPPVIKWAPGSLMFVTG-----SSE--LSFWIPDLSKLG  293 (304)
Q Consensus       256 ~---------~~~~~~i~~~~~~~~~~~l~s~-----~~d--~~iw~~~~~~~~  293 (304)
                      +         ..|...+..++|||||++++.+     +.+  ++|||....++.
T Consensus       348 ~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         348 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             EECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             EeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence            4         2456678899999999876432     223  999998776653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=3.1e-25  Score=172.21  Aligned_cols=238  Identities=13%  Similarity=0.122  Sum_probs=189.7

Q ss_pred             cceeeEeecccCcEEE-EeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee
Q 036585           16 LSEEILQSMEVGIYLV-TASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY   94 (304)
Q Consensus        16 ~~~~~i~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~   94 (304)
                      .....+.++|+|++|+ +++.++.|++||+.+++.+..+..+. .+..++|++++..+++....  ++.+.+|+..+++.
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  108 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMA--SSTLSVIDTTSNTV  108 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETT--TTEEEEEETTTTEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccc--cceeeeccccccee
Confidence            3456689999999875 66688999999999999999988776 56899999999988777653  88999999999988


Q ss_pred             eeecccccccEEEEEEcCCCCEEE-EcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585           95 SRYFKGHHDRVVLLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI  173 (304)
Q Consensus        95 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                      ...+.. .....++.|+|++..++ ++..++.+.+|+..+......+..                              .
T Consensus       109 ~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~  157 (301)
T d1l0qa2         109 AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV------------------------------G  157 (301)
T ss_dssp             EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------------------------------C
T ss_pred             eeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc------------------------------C
Confidence            888774 45678899999998765 556788999999998877666542                              2


Q ss_pred             CCceEEEEecCCcEEEEeeCC-CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEec---CCCcEEEEecCC
Q 036585          174 SDANVVKFSNDGRLMLLTTME-GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGS---GDGSVHAWSVRS  249 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~v~d~~~  249 (304)
                      ..+..++++|+++.+++++.+ +.+.+|+....+......    .......++|+++++.++.+.   .++.|++||+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t  233 (301)
T d1l0qa2         158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             CCceEEEeeccccceeeecccccccccccccceeeeeccc----ccCCcceeeccccccccccccccceeeeeeeeecCC
Confidence            346778999999988877655 677888887777777666    445677899999999877653   446899999999


Q ss_pred             CceeeeeeccCCCCceEEeCCCCcEE-EEecCc--eEEeccCCccc
Q 036585          250 GKEVASWMSFDTEPPVIKWAPGSLMF-VTGSSE--LSFWIPDLSKL  292 (304)
Q Consensus       250 ~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~d--~~iw~~~~~~~  292 (304)
                      ++.+..+..+ ..+.+++|+|||++| ++++.+  +++|+.+..++
T Consensus       234 ~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         234 NKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            9988887644 567999999999976 465555  99999876553

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=6.1e-25  Score=173.17  Aligned_cols=225  Identities=10%  Similarity=0.006  Sum_probs=168.3

Q ss_pred             cEEEEeeCCCeEEEEecCCcceeeeeccc--ccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccc--
Q 036585           28 IYLVTASDDESIRLYDVTAATCLKTINSK--KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHD--  103 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~--  103 (304)
                      +|+++++.|+.|+|||+++++.+.++..+  ...+..++|+|||+++++++..  ++.|.+||+.+++.+..+..+..  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~--~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK--SESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT--TTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECC--CCeEEEEECCCCcEEEEEecCCCcc
Confidence            58999999999999999999999888754  3457899999999998655432  89999999999998877664432  


Q ss_pred             ---cEEEEEEcCCCCEEEEcc------------cCCeEEEEeCCcceeeceEEEecc-ceeEecCCCeEEEecCCCeEEE
Q 036585          104 ---RVVLLSLCSSKDCFISGS------------LDRTVLLWDQRAEKCQGLLRVQGR-PAAAYDDQGLVFGYEKGPLDIF  167 (304)
Q Consensus       104 ---~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  167 (304)
                         .+..++|+|++++++++.            .+..+.+||..+++....+..... ..+.+++++..+....+...++
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  159 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVM  159 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEE
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCccee
Confidence               345788999999888775            356788899888877766654332 2455666654332222222222


Q ss_pred             Ee---------------------------------------------------------------------------cCC
Q 036585          168 SV---------------------------------------------------------------------------GGD  172 (304)
Q Consensus       168 ~~---------------------------------------------------------------------------~~~  172 (304)
                      +.                                                                           ..+
T Consensus       160 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (337)
T d1pbyb_         160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM  239 (337)
T ss_dssp             ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             eeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC
Confidence            21                                                                           112


Q ss_pred             CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585          173 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  252 (304)
                      ...+..+.++|++.+++.+  ++.|++||+.+++.+..+.    +...+.+++|+|||++|++++.|+.|++||+++++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             CcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc----CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE
Confidence            2334455666777766655  5789999999999999887    556788999999999999999999999999999999


Q ss_pred             eeeeeccC
Q 036585          253 VASWMSFD  260 (304)
Q Consensus       253 ~~~~~~~~  260 (304)
                      +.+++...
T Consensus       314 v~~i~~~g  321 (337)
T d1pbyb_         314 KGQVDLPG  321 (337)
T ss_dssp             EEEEECGG
T ss_pred             EEEEECCC
Confidence            98885433

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.5e-25  Score=182.76  Aligned_cols=251  Identities=12%  Similarity=0.034  Sum_probs=177.7

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeee-----ecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKT-----INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN   92 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~   92 (304)
                      ...+.++|||++|++++.|++|++||+.+++....     ..+|...+.+++|+|||+++++++..  ++.+++||..++
T Consensus        64 ~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~--~~~v~i~d~~~~  141 (426)
T d1hzua2          64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW--PPQFAIMDGETL  141 (426)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE--SSEEEEEETTTC
T ss_pred             eeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecC--CCeEEEEcCCcc
Confidence            34589999999999999999999999998875432     23566677788899999998777643  899999998876


Q ss_pred             eeeeecc-------------------------------------------------------cccccEEEEEEcCCCCEE
Q 036585           93 KYSRYFK-------------------------------------------------------GHHDRVVLLSLCSSKDCF  117 (304)
Q Consensus        93 ~~~~~~~-------------------------------------------------------~~~~~v~~~~~~~~~~~l  117 (304)
                      +....+.                                                       .+...+..+.|+|+++++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  221 (426)
T d1hzua2         142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYF  221 (426)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEE
T ss_pred             ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEE
Confidence            4432211                                                       123345567888888876


Q ss_pred             EEcc-cCCeEEEEeCCcceeeceEEEeccc-----------------eeEecCCCeEEEecCC--------CeEEEEecC
Q 036585          118 ISGS-LDRTVLLWDQRAEKCQGLLRVQGRP-----------------AAAYDDQGLVFGYEKG--------PLDIFSVGG  171 (304)
Q Consensus       118 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~--------~~~~~~~~~  171 (304)
                      +++. .+..+.+++..+++...........                 ......++.+......        ......+.+
T Consensus       222 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g  301 (426)
T d1hzua2         222 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG  301 (426)
T ss_dssp             EEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred             EeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEec
Confidence            6654 4567888888887776655432211                 0112233333322211        124456778


Q ss_pred             CCCCceEEEEecCCcEEEE-------eeCCCeEEEEEcCCCceeEEEEe------CCCCCCcceEEEEcCCCcEEEEe--
Q 036585          172 DISDANVVKFSNDGRLMLL-------TTMEGHIHVLDSFRGTLLSTYNV------KPVSRNSTLEASFSPEGMFVISG--  236 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~-------~~~dg~i~~~d~~~~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~~~--  236 (304)
                      |...+..++|+|++++|++       +..+++|++||+++++...++..      ...+...+..++|||||++++.+  
T Consensus       302 ~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~  381 (426)
T d1hzua2         302 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVW  381 (426)
T ss_dssp             SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEEC
T ss_pred             CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEe
Confidence            8899999999999999995       45678999999999987766541      22356678899999999977432  


Q ss_pred             ---cCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEE
Q 036585          237 ---SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFV  276 (304)
Q Consensus       237 ---~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  276 (304)
                         +.++.|+|||.++++....+.++.      .++|+|++-+
T Consensus       382 ~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~  418 (426)
T d1hzua2         382 NGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV  418 (426)
T ss_dssp             CCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred             cCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence               467889999999999988887664      3467777643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.95  E-value=5e-25  Score=174.30  Aligned_cols=234  Identities=9%  Similarity=0.023  Sum_probs=170.0

Q ss_pred             eecccCcEEEEeeCCCeEEEEecCCcceeeeecc-cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeeccc
Q 036585           22 QSMEVGIYLVTASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG  100 (304)
Q Consensus        22 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~  100 (304)
                      +++++++||++++.++.|.+||+.+++++.++.. +...+..++|+||++++++++..  ++.|++||+.+++.+..+..
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~--~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH--YGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEES
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECC--CCcEEEEeCccCeeeeeecc
Confidence            5788999999999999999999999999998874 45678899999999998766542  89999999999987766542


Q ss_pred             c------cccEEEEEEcCCCCEEEEcc------------cCCeEEEEeCCcceeeceEEEec----cceeEecCCCeEEE
Q 036585          101 H------HDRVVLLSLCSSKDCFISGS------------LDRTVLLWDQRAEKCQGLLRVQG----RPAAAYDDQGLVFG  158 (304)
Q Consensus       101 ~------~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  158 (304)
                      .      ...+..++|+|||+++++++            .+..+.+||..+++....+....    .......+++.++.
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            2      22456789999999887765            36778899888766544332211    11112222221110


Q ss_pred             ec----------------------------------------------------------------------------CC
Q 036585          159 YE----------------------------------------------------------------------------KG  162 (304)
Q Consensus       159 ~~----------------------------------------------------------------------------~~  162 (304)
                      ..                                                                            .+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
T d1jmxb_         161 AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  240 (346)
T ss_dssp             ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             eCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence            00                                                                            00


Q ss_pred             CeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcE
Q 036585          163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV  242 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  242 (304)
                      .........+...+..+.+++++.+++.... +.|.+||..+++.+..+.    ....+.+++|+|||++|++++.|+.|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~----~~~~~~~va~s~DG~~l~v~~~d~~v  315 (346)
T d1jmxb_         241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDL  315 (346)
T ss_dssp             CEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEE
T ss_pred             ceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc----CCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence            1111111223445566777787777766554 589999999999988887    45578899999999999999999999


Q ss_pred             EEEecCCCceeeeeeccCCC
Q 036585          243 HAWSVRSGKEVASWMSFDTE  262 (304)
Q Consensus       243 ~v~d~~~~~~~~~~~~~~~~  262 (304)
                      ++||+++++.+.++..+.++
T Consensus       316 ~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         316 AVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             EEEETTTTEEEEEEECSSSC
T ss_pred             EEEECccCCEEEEEECCCCC
Confidence            99999999999988755544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=4.7e-26  Score=181.34  Aligned_cols=189  Identities=10%  Similarity=0.032  Sum_probs=158.0

Q ss_pred             eEEEEcc-CCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCC--eEEEEeCCcceee
Q 036585           61 DLVCFTS-HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDR--TVLLWDQRAEKCQ  137 (304)
Q Consensus        61 ~~~~~~~-~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~  137 (304)
                      ..-.||| ||+++++++    ++.|++||+.+++.++.  +|...|.+++|+|||++|++++.+.  .|++||+++++..
T Consensus         6 ~~~~fSP~dG~~~a~~~----~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~   79 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS----RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE   79 (360)
T ss_dssp             GEEEEEECGGGCEEEEE----TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             hcccccCCCCCEEEEEE----CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE
Confidence            3467999 999999987    78999999998876653  5899999999999999988776553  7999999887654


Q ss_pred             ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCC
Q 036585          138 GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  217 (304)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  217 (304)
                      ...                              .|...+.+++|+|+|++|++++.++.+++|++.+++....+.   .+
T Consensus        80 ~~~------------------------------~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~  126 (360)
T d1k32a3          80 KFE------------------------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER---SR  126 (360)
T ss_dssp             ECC------------------------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CS
T ss_pred             Eee------------------------------CCCceEEeeeecccccccceeccccccccccccccceeeeee---cc
Confidence            322                              467889999999999999999999999999999999888887   57


Q ss_pred             CCcceEEEEcCCCcEEEEe----------cCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEe
Q 036585          218 RNSTLEASFSPEGMFVISG----------SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFW  285 (304)
Q Consensus       218 ~~~i~~~~~s~~~~~l~~~----------~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw  285 (304)
                      ...+.+++|+|||++|+.+          ..++.+++||+.+++... +..+...+..++|+|+|++|++++.+  +.+|
T Consensus       127 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~  205 (360)
T d1k32a3         127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSP  205 (360)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred             cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcc
Confidence            7888999999999999854          345579999998876544 44567778899999999999999988  7788


Q ss_pred             ccCC
Q 036585          286 IPDL  289 (304)
Q Consensus       286 ~~~~  289 (304)
                      +...
T Consensus       206 d~~~  209 (360)
T d1k32a3         206 DRVV  209 (360)
T ss_dssp             CSSS
T ss_pred             cccc
Confidence            7543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=6.9e-25  Score=178.66  Aligned_cols=269  Identities=8%  Similarity=-0.017  Sum_probs=171.4

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCccee--ee---ecccccceeEEEEccCCCeEEE-EecCCCCCceEEEEccC
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCL--KT---INSKKYGVDLVCFTSHPTTVIY-SSKNGWDESLRLLSLHD   91 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~--~~---~~~~~~~v~~~~~~~~~~~l~~-~~~~~~d~~i~vwd~~~   91 (304)
                      ...+.++|||+++++++.|+.+++||+.+++..  ..   ...|.+.+.+.+|+|||++|++ +..   ++.|++||..+
T Consensus        64 ~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~---~~~v~i~d~~t  140 (432)
T d1qksa2          64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW---PPQYVIMDGET  140 (432)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE---TTEEEEEETTT
T ss_pred             eeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCC---CCeEEEEeCcc
Confidence            456899999999999999999999999877632  22   3356667777788999998754 555   99999999999


Q ss_pred             ceeeeeccc-----------ccccEEEEEEcCCCCEE-EEcccCCeEEEEeCCcceeeceEEEe--c-cceeEecCCCeE
Q 036585           92 NKYSRYFKG-----------HHDRVVLLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQ--G-RPAAAYDDQGLV  156 (304)
Q Consensus        92 ~~~~~~~~~-----------~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~--~-~~~~~~~~~~~~  156 (304)
                      ++.+..+..           +......+.++|++..+ ++...++.|.+||..+.+........  . ...+.+++++..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~  220 (432)
T d1qksa2         141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY  220 (432)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred             ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCE
Confidence            988776543           33456778899998865 55667899999998877654433322  2 235678888753


Q ss_pred             E--Eec-CCCeEEEEecC--------------CCCCceEEEEecCCcEEEEee-CCCeEEEEEcCCCc-------eeEEE
Q 036585          157 F--GYE-KGPLDIFSVGG--------------DISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGT-------LLSTY  211 (304)
Q Consensus       157 ~--~~~-~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~-------~~~~~  211 (304)
                      +  ... ...+.+++...              +........+.+.+....+.. .++.+.+|+.....       .....
T Consensus       221 ~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~  300 (432)
T d1qksa2         221 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF  300 (432)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred             EEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEE
Confidence            3  221 22233332211              122222333333333333332 35667777654321       12222


Q ss_pred             EeCC----------------------CCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeC
Q 036585          212 NVKP----------------------VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWA  269 (304)
Q Consensus       212 ~~~~----------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  269 (304)
                      ..+.                      .+......+++ ||++.+++++.|+.+++|++.++.   .+..|...+..++|+
T Consensus       301 ~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS  376 (432)
T d1qksa2         301 PALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFN  376 (432)
T ss_dssp             ECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHH---TCCSSCCEEEEEEEC
T ss_pred             EcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEeccccccc---ccCCCCCcEEEeEEC
Confidence            1100                      01111223444 788888888888889999875543   233577788999999


Q ss_pred             CCCcEEEEec-----Cc--eEEeccCCcccc
Q 036585          270 PGSLMFVTGS-----SE--LSFWIPDLSKLG  293 (304)
Q Consensus       270 ~~~~~l~s~~-----~d--~~iw~~~~~~~~  293 (304)
                      |||++++.+.     .+  +.|||-...++.
T Consensus       377 ~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~  407 (432)
T d1qksa2         377 KDGTEVWFSVWNGKDQESALVVVDDKTLELK  407 (432)
T ss_dssp             TTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             CCCCEEEEEEecCCCCCCcEEEEECCCceEE
Confidence            9998875543     22  899998776653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=5.2e-23  Score=167.48  Aligned_cols=236  Identities=11%  Similarity=0.078  Sum_probs=172.6

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee-----eeecccc
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-----SRYFKGH  101 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~-----~~~~~~~  101 (304)
                      .-++++.+.||+|.|||..+++++..+..+. .+..++|+|||+++++++.   |+.+++||+.+++.     +.....|
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~---dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGR---DGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcC---CCCEEEEEeeCCCceEEEEEecCCCC
Confidence            3446899999999999999999999998875 6999999999999999988   99999999988753     2233456


Q ss_pred             cccEEEEEEcCCCCEE-EEcccCCeEEEEeCCcceeeceEEEeccc--eeEecCCCeEEEecCCCeEEEEecCCCCCceE
Q 036585          102 HDRVVLLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQGRP--AAAYDDQGLVFGYEKGPLDIFSVGGDISDANV  178 (304)
Q Consensus       102 ~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  178 (304)
                      .+.+.+..|+|||++| ++++.++.+++||.++++....+......  ...+                    .+......
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~  167 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY--------------------HPEPRVAA  167 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE--------------------ESCCCEEE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceec--------------------cCCCceeE
Confidence            6777888889999976 67888999999999999887776543221  1111                    13345667


Q ss_pred             EEEecCCcEEEE-eeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC-CCcEEEEecCCCceeeee
Q 036585          179 VKFSNDGRLMLL-TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       179 ~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~  256 (304)
                      +.++|+|..+++ ...++.|.+||..+.+.......  .....+..++|+|+|+++++++. ++.+.++|..+++.+..+
T Consensus       168 v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i--~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         168 ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEE--cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence            899999987654 56679999999988776554433  24566788999999998777764 557999999887776554


Q ss_pred             e-----ccCCCCceEEeCCCCcEEEEecC-c--eEEeccC
Q 036585          257 M-----SFDTEPPVIKWAPGSLMFVTGSS-E--LSFWIPD  288 (304)
Q Consensus       257 ~-----~~~~~i~~~~~~~~~~~l~s~~~-d--~~iw~~~  288 (304)
                      .     .|........+.+.+...++... +  +.+|...
T Consensus       246 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~  285 (432)
T d1qksa2         246 DTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD  285 (432)
T ss_dssp             ECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             ccCccccccCcccceecCCCCceecccccCCceEEecccc
Confidence            2     23333444455555555554432 2  6666543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=6.5e-22  Score=153.26  Aligned_cols=224  Identities=13%  Similarity=0.165  Sum_probs=174.3

Q ss_pred             EEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEE
Q 036585           30 LVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLS  109 (304)
Q Consensus        30 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  109 (304)
                      +++.+.|++|.+||+++++.+.++.... .+..++|+|+|++|++++..  ++.|++||+.+++.+..+..+. .+..+.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~~va~spdG~~l~v~~~~--~~~i~v~d~~t~~~~~~~~~~~-~~~~~~   80 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAH--SNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGG--GTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCC-CceEEEEeCCCCEEEEEECC--CCEEEEEECCCCceeeeeeccc-cccccc
Confidence            3456788999999999999999887654 57899999999988655432  8999999999999998888665 468899


Q ss_pred             EcCCCCEEE-EcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEE
Q 036585          110 LCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLM  188 (304)
Q Consensus       110 ~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  188 (304)
                      |++++..++ ++..++.+.+|+..+++....+.                              +......+.++|+++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~dg~~~  130 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK------------------------------TGKSPLGLALSPDGKKL  130 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE------------------------------CSSSEEEEEECTTSSEE
T ss_pred             cccccccccccccccceeeecccccceeeeecc------------------------------ccccceEEEeecCCCee
Confidence            999988655 55677899999999887766654                              22456779999999877


Q ss_pred             EE-eeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-CcEEEEecCCCceeeeeeccCCCCceE
Q 036585          189 LL-TTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-GSVHAWSVRSGKEVASWMSFDTEPPVI  266 (304)
Q Consensus       189 ~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~v~d~~~~~~~~~~~~~~~~i~~~  266 (304)
                      ++ +..++.+.+|+..+.+....+.    ....+..++++|+++++++++.+ +.+.+|+....+....+. ....+..+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  205 (301)
T d1l0qa2         131 YVTNNGDKTVSVINTVTKAVINTVS----VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGI  205 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEE
T ss_pred             eeeeccccceeeeeccccceeeecc----cCCCceEEEeeccccceeeecccccccccccccceeeeeccc-ccCCccee
Confidence            65 5567889999999999888887    44567889999999988877655 567788877666655554 44557889


Q ss_pred             EeCCCCcEEEEecCc-----eEEeccCCccc
Q 036585          267 KWAPGSLMFVTGSSE-----LSFWIPDLSKL  292 (304)
Q Consensus       267 ~~~~~~~~l~s~~~d-----~~iw~~~~~~~  292 (304)
                      +|++++..++.++.+     +.+|+....++
T Consensus       206 ~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~  236 (301)
T d1l0qa2         206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI  236 (301)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred             eccccccccccccccceeeeeeeeecCCCeE
Confidence            999999887665433     77887765543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=5.1e-21  Score=150.35  Aligned_cols=259  Identities=10%  Similarity=0.113  Sum_probs=172.1

Q ss_pred             EEEEeeCCCeEEEEecCCcceeeee--cccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc---cccc
Q 036585           29 YLVTASDDESIRLYDVTAATCLKTI--NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK---GHHD  103 (304)
Q Consensus        29 ~l~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~---~~~~  103 (304)
                      .+++++.|++|++|++++...+..+  ..|.+.+..++|+|||++|++++..  |+.|++|++........+.   .+..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~--d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP--EFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECC--CCeEEEEEEeCCCCcEEEeeecccCC
Confidence            3567779999999998765433333  2566789999999999999776653  8999999998664333222   2334


Q ss_pred             cEEEEEEcCCCCEEEEccc-CCeEEEEeCCcceeeceEEEec----cceeEecCCCeEE---EecCCCeEEEEecC----
Q 036585          104 RVVLLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQG----RPAAAYDDQGLVF---GYEKGPLDIFSVGG----  171 (304)
Q Consensus       104 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~----  171 (304)
                      .+..++|+|+|++|++++. ++.+.+|+..............    ...+.+++++..+   ......+.++....    
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence            5678999999999888874 6789999887766554443322    2245667766433   12233444444332    


Q ss_pred             -----------CCCCceEEEEecCCcEEEEee-CCCeEEEEEcCCCce----eEEEEeC---CCCCCcceEEEEcCCCcE
Q 036585          172 -----------DISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTL----LSTYNVK---PVSRNSTLEASFSPEGMF  232 (304)
Q Consensus       172 -----------~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~----~~~~~~~---~~~~~~i~~~~~s~~~~~  232 (304)
                                 .......++|++++.+++... ..+...+++......    .......   .........+++++++++
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  243 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  243 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence                       224456799999998877654 456777887643321    1222211   112345667899999987


Q ss_pred             EEEe-cCCCcEEEEecCCCceeeee---eccCCCCceEEeCCCCcEEEEecCc---eEEeccCC
Q 036585          233 VISG-SGDGSVHAWSVRSGKEVASW---MSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPDL  289 (304)
Q Consensus       233 l~~~-~~dg~i~v~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~  289 (304)
                      ++.. ..++.+.+|++.........   ......+.+++|+|||++|++++.+   +++|.++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         244 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             eeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            6655 56778999998765443333   3344667899999999998877644   99997754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=4e-21  Score=152.42  Aligned_cols=245  Identities=13%  Similarity=0.074  Sum_probs=173.1

Q ss_pred             eecccCcEEEEee-----CCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecC-------CCCCceEEEEc
Q 036585           22 QSMEVGIYLVTAS-----DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLRLLSL   89 (304)
Q Consensus        22 ~~~~~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------~~d~~i~vwd~   89 (304)
                      ..+|||+.+++..     .+..|.+||..+++.+.++..+.  ...++|+||+++|++++..       ..++.|++||+
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            4578999887653     45679999999999999887664  3479999999999875420       11689999999


Q ss_pred             cCceeeeecccccc-------cEEEEEEcCCCCEEEEc--ccCCeEEEEeCCcceeeceEEEecc---------ceeEec
Q 036585           90 HDNKYSRYFKGHHD-------RVVLLSLCSSKDCFISG--SLDRTVLLWDQRAEKCQGLLRVQGR---------PAAAYD  151 (304)
Q Consensus        90 ~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~~~  151 (304)
                      .+++.+..+..+..       ....+.|+|++++++.+  +.+..+.+|+..+++....+.....         ..+.+.
T Consensus        86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
T d2bbkh_          86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHC  165 (355)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEc
Confidence            99987776543322       23457899999987765  4567899999988876654432111         111122


Q ss_pred             CCC----------------------------------------eEEEecCCCeEEEEecCCC------------------
Q 036585          152 DQG----------------------------------------LVFGYEKGPLDIFSVGGDI------------------  173 (304)
Q Consensus       152 ~~~----------------------------------------~~~~~~~~~~~~~~~~~~~------------------  173 (304)
                      +++                                        .++...++.+.++++....                  
T Consensus       166 ~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  245 (355)
T d2bbkh_         166 RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG  245 (355)
T ss_dssp             TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred             CCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeee
Confidence            221                                        1223334555555544321                  


Q ss_pred             ---CCceEEEEecCCcEEEEeeCC----------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc--EEEEecC
Q 036585          174 ---SDANVVKFSNDGRLMLLTTME----------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM--FVISGSG  238 (304)
Q Consensus       174 ---~~v~~~~~~~~~~~l~~~~~d----------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~  238 (304)
                         .....+++++++..++....+          ..|.+||..+++.+..+.    ....+.+++|+|||+  ++++++.
T Consensus       246 ~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~----~~~~~~~~a~spDG~~~l~v~~~~  321 (355)
T d2bbkh_         246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE----MGHEIDSINVSQDEKPLLYALSTG  321 (355)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE----EEEEECEEEECCSSSCEEEEEETT
T ss_pred             eeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec----CCCCEEEEEEcCCCCeEEEEEECC
Confidence               223457888898887776543          369999999999888876    345678999999997  4567778


Q ss_pred             CCcEEEEecCCCceeeeeeccCCCCceEEeCCCC
Q 036585          239 DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGS  272 (304)
Q Consensus       239 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  272 (304)
                      |+.|++||+++++.+.++.++......+.+.++|
T Consensus       322 d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         322 DKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             TTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             CCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            9999999999999999998787777777776654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.3e-20  Score=148.10  Aligned_cols=219  Identities=9%  Similarity=0.123  Sum_probs=157.7

Q ss_pred             CeEEEEecCCCCCceEEEEccCceeeeecccc--cccEEEEEEcCCCCEE-EEcccCCeEEEEeCCcceeeceEEEec--
Q 036585           70 TTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH--HDRVVLLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLLRVQG--  144 (304)
Q Consensus        70 ~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~--  144 (304)
                      +++++++.   |++|++||+.+++.+..+..+  ...+.+++|+|||+++ ++++.++.|.+||+.+++....+....  
T Consensus         2 ~~~vt~~~---d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~   78 (337)
T d1pbyb_           2 DYILAPAR---PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEET---TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             eEEEEEcC---CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc
Confidence            46888888   999999999999998887643  3467899999999987 466789999999999998877665432  


Q ss_pred             -----cceeEecCCCeEEEe--------------cCCCeEEEEec--------CCCCCceEEEEecCCcEEEEeeCCCeE
Q 036585          145 -----RPAAAYDDQGLVFGY--------------EKGPLDIFSVG--------GDISDANVVKFSNDGRLMLLTTMEGHI  197 (304)
Q Consensus       145 -----~~~~~~~~~~~~~~~--------------~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i  197 (304)
                           ...+.+++++..+..              ....+.+++..        .....+..++|+|+|+++++++.+  +
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~  156 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--L  156 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--E
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--c
Confidence                 224566776643311              12233333322        134567889999999999988654  6


Q ss_pred             EEEEcCCCceeEEEEeCC--------------------------------------------------------------
Q 036585          198 HVLDSFRGTLLSTYNVKP--------------------------------------------------------------  215 (304)
Q Consensus       198 ~~~d~~~~~~~~~~~~~~--------------------------------------------------------------  215 (304)
                      .+||..+++....+....                                                              
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T d1pbyb_         157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             ceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence            678877665544432100                                                              


Q ss_pred             -CCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCC-cc
Q 036585          216 -VSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDL-SK  291 (304)
Q Consensus       216 -~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~-~~  291 (304)
                       .+......+.++|++.+++.+  ++.|++||+++++.+..+. +...+.+++|+|||++|++++.+  +++|+.+. +.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             cCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE
Confidence             122234456777888877766  5789999999999988875 66778999999999999999888  99999864 44


Q ss_pred             ccccc
Q 036585          292 LGAYV  296 (304)
Q Consensus       292 ~~~~~  296 (304)
                      ++++.
T Consensus       314 v~~i~  318 (337)
T d1pbyb_         314 KGQVD  318 (337)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.87  E-value=5.9e-19  Score=140.78  Aligned_cols=243  Identities=10%  Similarity=0.065  Sum_probs=172.2

Q ss_pred             eEeecccCcEEEEee----------CCCeEEEEecCCcceeeeecccccce-------eEEEEccCCCeEEEEecCCCCC
Q 036585           20 ILQSMEVGIYLVTAS----------DDESIRLYDVTAATCLKTINSKKYGV-------DLVCFTSHPTTVIYSSKNGWDE   82 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~~~~~~d~   82 (304)
                      .+.++|||++|++++          .++.|++||..+++.+..+..+....       ..+.|+++++.++...... ++
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-~~  148 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA-GP  148 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC-CC
Confidence            589999999999875          45789999999999988877665433       4578899999877665421 67


Q ss_pred             ceEEEEccCceeeeecccccccEEEEEEcCCCCE-EEEcccCCeEEEEeCCcceeeceEEEecc--------ceeEecCC
Q 036585           83 SLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDC-FISGSLDRTVLLWDQRAEKCQGLLRVQGR--------PAAAYDDQ  153 (304)
Q Consensus        83 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~  153 (304)
                      .+.+|+....+....    .....++.++|+++. +++.+.|+.+.+|+...............        ......++
T Consensus       149 ~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (373)
T d2madh_         149 AVGLVVQGGSSDDQL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             ceEEeeccCCeEEEE----eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCC
Confidence            888999887665433    334667889998875 56788999999999988776654432111        11223333


Q ss_pred             CeEE-EecCCCeEEEEecC---------------------CCCCceEEEEecCCcEEE----------EeeCCCeEEEEE
Q 036585          154 GLVF-GYEKGPLDIFSVGG---------------------DISDANVVKFSNDGRLML----------LTTMEGHIHVLD  201 (304)
Q Consensus       154 ~~~~-~~~~~~~~~~~~~~---------------------~~~~v~~~~~~~~~~~l~----------~~~~dg~i~~~d  201 (304)
                      +..+ ...++.+.++....                     .......+++++++..++          ....++.+.+||
T Consensus       225 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d  304 (373)
T d2madh_         225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEE
Confidence            3222 22223333332221                     112234456666665544          445567899999


Q ss_pred             cCCCceeEEEEeCCCCCCcceEEEEcCCCcE--EEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCC
Q 036585          202 SFRGTLLSTYNVKPVSRNSTLEASFSPEGMF--VISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~  271 (304)
                      ..+++.+..+.    +...+..++|+|||+.  +++++.|+.|++||+.+++.+.++..+....+.|++.++
T Consensus       305 ~~t~~~~~~~~----~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         305 GLVGQTSSQIS----LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCcEEEEec----CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            99999888876    5677889999999984  467889999999999999999999988888888887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=9.5e-21  Score=149.39  Aligned_cols=226  Identities=11%  Similarity=0.047  Sum_probs=152.6

Q ss_pred             EEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc-cccccEEEEEEcCCCCEE-EEcccCCeEEEEeCCcceeeceE
Q 036585           63 VCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK-GHHDRVVLLSLCSSKDCF-ISGSLDRTVLLWDQRAEKCQGLL  140 (304)
Q Consensus        63 ~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~  140 (304)
                      ++|+++++++++++.   +++|.+||+.+++.+.+++ .+...+.+++|+|||+++ +++..++.|++||+.+++....+
T Consensus         2 ~a~~~~~~~l~~~~~---~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           2 PALKAGHEYMIVTNY---PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCCTTCEEEEEEET---TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCCCCCcEEEEEcC---CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence            478999999999998   9999999999999988876 355677899999999986 55567899999999999887665


Q ss_pred             EEec--------cceeEecCCCeEE--------------EecCCCeEEEEecC-----------CCCCceEEEEecCCcE
Q 036585          141 RVQG--------RPAAAYDDQGLVF--------------GYEKGPLDIFSVGG-----------DISDANVVKFSNDGRL  187 (304)
Q Consensus       141 ~~~~--------~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~  187 (304)
                      ....        ...+.+++++..+              ...+..+.+++...           ....+..+.+++++..
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL  158 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEE
Confidence            4322        2345677776433              11233334443321           1112233333334333


Q ss_pred             EEEe----------------------------------------------------------------eCCCeEEEEEcC
Q 036585          188 MLLT----------------------------------------------------------------TMEGHIHVLDSF  203 (304)
Q Consensus       188 l~~~----------------------------------------------------------------~~dg~i~~~d~~  203 (304)
                      ++.+                                                                ..++.+.+||+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
T d1jmxb_         159 YVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK  238 (346)
T ss_dssp             EEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred             EEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECC
Confidence            2221                                                                112223444444


Q ss_pred             CCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--
Q 036585          204 RGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--  281 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--  281 (304)
                      ++........  .+...+..+.+++++.+++... ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|  
T Consensus       239 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~  314 (346)
T d1jmxb_         239 TGKTHTQEFA--DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND  314 (346)
T ss_dssp             TCCEEEEEEE--ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSE
T ss_pred             CCceEEEEee--cccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCc
Confidence            4443332221  2455677788888888877765 4579999999999888775 55679999999999999999888  


Q ss_pred             eEEeccCCcc-cccc
Q 036585          282 LSFWIPDLSK-LGAY  295 (304)
Q Consensus       282 ~~iw~~~~~~-~~~~  295 (304)
                      +++|+.+..+ ++++
T Consensus       315 v~v~D~~t~~~i~~i  329 (346)
T d1jmxb_         315 LAVFNPDTLEKVKNI  329 (346)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEECccCCEEEEE
Confidence            9999997543 3443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.86  E-value=3.3e-18  Score=136.34  Aligned_cols=275  Identities=9%  Similarity=-0.039  Sum_probs=181.4

Q ss_pred             eeeEeecccCcEEEEee-----CCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecC-------CCCCceE
Q 036585           18 EEILQSMEVGIYLVTAS-----DDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------GWDESLR   85 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------~~d~~i~   85 (304)
                      ...+.++|+|+.++...     ..+.|.+||..+++.+.++..+..  ..++|+|||++++++...       ..++.|.
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~  100 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEE
Confidence            34567899999887652     345799999999999998877653  379999999999988641       1267899


Q ss_pred             EEEccCceeeeecccccccE-------EEEEEcCCCCEEEEc--ccCCeEEEEeCCcceeeceEEEeccceeEecCCCe-
Q 036585           86 LLSLHDNKYSRYFKGHHDRV-------VLLSLCSSKDCFISG--SLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGL-  155 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-  155 (304)
                      +||..+++.+..+..+....       ..+.|+++++.++..  ..++.+.+|+....+........  ....+++++. 
T Consensus       101 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~g~~  178 (373)
T d2madh_         101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP--TCYHIHPGAPS  178 (373)
T ss_pred             EEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccc--eeEEEecCCCc
Confidence            99999999888776555433       446788888866554  34567889988776654443322  2333444431 


Q ss_pred             --EEEecCCCeEEEEecCC---------------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC---
Q 036585          156 --VFGYEKGPLDIFSVGGD---------------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP---  215 (304)
Q Consensus       156 --~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---  215 (304)
                        +....++.+.+++....               ......+.+++++. ++..+.++.+.+|+..+...........   
T Consensus       179 ~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  257 (373)
T d2madh_         179 TFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSG  257 (373)
T ss_pred             EEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccC
Confidence              33445566666654321               11223345555554 4556678899999987765433322110   


Q ss_pred             ------CCCCcceEEEEcCCCcEEE----------EecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcE--EEE
Q 036585          216 ------VSRNSTLEASFSPEGMFVI----------SGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLM--FVT  277 (304)
Q Consensus       216 ------~~~~~i~~~~~s~~~~~l~----------~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~s  277 (304)
                            ........++++|++..++          +...++.+.+||+.+++.+..+. +...+..++|+|||+.  +++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt  336 (373)
T d2madh_         258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             cEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEE
Confidence                  0112334456666665544          44556789999999999888775 6677899999999984  456


Q ss_pred             ecCc--eEEeccCCcc-ccccccC
Q 036585          278 GSSE--LSFWIPDLSK-LGAYVGR  298 (304)
Q Consensus       278 ~~~d--~~iw~~~~~~-~~~~~~~  298 (304)
                      ++.|  +++||....+ ++.+.++
T Consensus       337 ~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         337 SAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             eCCCCeEEEEECCCCCEEEEECCC
Confidence            6666  9999997544 4555433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=5.2e-18  Score=132.93  Aligned_cols=235  Identities=10%  Similarity=0.071  Sum_probs=154.1

Q ss_pred             cceeeEeecccCcEEEEee-CCCeEEEEecCCcceeeeecc---cccceeEEEEccCCCeEEEEecCCCCCceEEEEccC
Q 036585           16 LSEEILQSMEVGIYLVTAS-DDESIRLYDVTAATCLKTINS---KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   91 (304)
Q Consensus        16 ~~~~~i~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~   91 (304)
                      .....+.++|||++|++++ .|+.|++|++.......++..   +...+..++|+|+|++|++++..  ++.+.+|+...
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~--~~~v~~~~~~~  114 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN--AGNVSVTRLED  114 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT--TTEEEEEEEET
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccC--CCceeeecccc
Confidence            3445688999999986555 589999999986654333322   33457789999999999999863  78899999877


Q ss_pred             ceeeee--cccccccEEEEEEcCCCCEEEEcc-cCCeEEEEeCCcceeeceEEEe--------ccceeEecCCCeEE---
Q 036585           92 NKYSRY--FKGHHDRVVLLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQ--------GRPAAAYDDQGLVF---  157 (304)
Q Consensus        92 ~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~---  157 (304)
                      ......  ...+...+.++.++|++++++.++ .+..+.+|+.............        ....+.+++++...   
T Consensus       115 ~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~  194 (333)
T d1ri6a_         115 GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV  194 (333)
T ss_dssp             TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred             ccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEee
Confidence            654333  334566788899999999877766 4567999998765433222111        11234555554332   


Q ss_pred             EecCCCeEEEEecC-------------------CCCCceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCCC
Q 036585          158 GYEKGPLDIFSVGG-------------------DISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVS  217 (304)
Q Consensus       158 ~~~~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~  217 (304)
                      ....+...++....                   .......++++++++++++. ..++.+.+|++...............
T Consensus       195 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (333)
T d1ri6a_         195 NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT  274 (333)
T ss_dssp             ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred             ccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCC
Confidence            11222333333221                   12345568899999876665 55778999998765444333322234


Q ss_pred             CCcceEEEEcCCCcEEEEec-CCCcEEEEec--CCCce
Q 036585          218 RNSTLEASFSPEGMFVISGS-GDGSVHAWSV--RSGKE  252 (304)
Q Consensus       218 ~~~i~~~~~s~~~~~l~~~~-~dg~i~v~d~--~~~~~  252 (304)
                      ...+..++|+|||++|++++ .++.|++|++  +++++
T Consensus       275 ~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         275 ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             CCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            45677899999999987765 4688999954  56654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=3e-18  Score=136.47  Aligned_cols=240  Identities=10%  Similarity=0.049  Sum_probs=164.6

Q ss_pred             eeEeecccCcEEEEee----------CCCeEEEEecCCcceeeeeccccc-------ceeEEEEccCCCeEEEEecCCCC
Q 036585           19 EILQSMEVGIYLVTAS----------DDESIRLYDVTAATCLKTINSKKY-------GVDLVCFTSHPTTVIYSSKNGWD   81 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~~~~d   81 (304)
                      ..+.+++||++|++++          .|+.|++||..+++++..+..+..       ....++|+|||++++++...  +
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~--~  145 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG--S  145 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS--S
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC--C
Confidence            3578999999988765          467899999999999887764432       23468999999999988653  8


Q ss_pred             CceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEe--------ccceeEecCC
Q 036585           82 ESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQ--------GRPAAAYDDQ  153 (304)
Q Consensus        82 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~  153 (304)
                      +.+.+||+.+++.+..+..+.....   +......++..+.||.+.++++............        ........++
T Consensus       146 ~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (368)
T d1mdah_         146 SAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             SCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             CeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC
Confidence            9999999999998887765443321   1123446677777888888877655433222111        1112344555


Q ss_pred             CeEEEecCCCeEEEEecCC---------------------CCCceEEEEecCCcEEEEeeCC---------CeEEEEEcC
Q 036585          154 GLVFGYEKGPLDIFSVGGD---------------------ISDANVVKFSNDGRLMLLTTME---------GHIHVLDSF  203 (304)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~---------------------~~~v~~~~~~~~~~~l~~~~~d---------g~i~~~d~~  203 (304)
                      +..+....+.+.+..+...                     ......++++|++..+++...+         ..|.+||..
T Consensus       223 g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~  302 (368)
T d1mdah_         223 GMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS  302 (368)
T ss_dssp             TEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred             cEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC
Confidence            5555444454444443321                     1233458889998877665332         359999999


Q ss_pred             CCceeEEEEeCCCCCCcceEEEEcCCCc-E-EEEecCCCcEEEEecCCCceeeeeeccCCCCceEEe
Q 036585          204 RGTLLSTYNVKPVSRNSTLEASFSPEGM-F-VISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKW  268 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~-l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  268 (304)
                      +++.+..+.    ....+..++|+|||+ + ++++..++.|++||..+++.+.++..... .+.|++
T Consensus       303 t~~~~~~~~----~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         303 VGQTSGPIS----NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             SCCEEECCE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred             CCcEeEEec----CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence            999888776    446788899999997 3 45667889999999999999988864433 455554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=5.8e-17  Score=128.95  Aligned_cols=269  Identities=7%  Similarity=-0.047  Sum_probs=172.6

Q ss_pred             eeeEeecccCcE--EE-EeeCCCe--EEEEecCCcceeeeecccccceeEEEEccCCCeEEEEec-------CCCCCceE
Q 036585           18 EEILQSMEVGIY--LV-TASDDES--IRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSK-------NGWDESLR   85 (304)
Q Consensus        18 ~~~i~~~~~~~~--l~-~~~~d~~--i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------~~~d~~i~   85 (304)
                      ...+...++++.  ++ ....++.  +.+||..+++.+..+..+..+  .++|+||++.+++.+.       ...|+.|.
T Consensus        22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~   99 (368)
T d1mdah_          22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVE   99 (368)
T ss_dssp             CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEE
T ss_pred             ccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEE
Confidence            334455667664  22 2344444  667799999999888877644  6899999999998652       11267899


Q ss_pred             EEEccCceeeeecccccc-------cEEEEEEcCCCCEEEEcc-cCCeEEEEeCCcceeeceEEEeccceeEe-cCCCeE
Q 036585           86 LLSLHDNKYSRYFKGHHD-------RVVLLSLCSSKDCFISGS-LDRTVLLWDQRAEKCQGLLRVQGRPAAAY-DDQGLV  156 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~  156 (304)
                      +||..+++++..+..+..       ....++|+|||++++++. .++.+.+||+.+++....+..+....... .....+
T Consensus       100 v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v  179 (368)
T d1mdah_         100 VFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHY  179 (368)
T ss_dssp             EECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEE
T ss_pred             EEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEE
Confidence            999999988776653322       224689999999888765 57899999999998887776544332211 111222


Q ss_pred             EEecCCCeEEEEecC---------------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCC-----
Q 036585          157 FGYEKGPLDIFSVGG---------------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPV-----  216 (304)
Q Consensus       157 ~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----  216 (304)
                      ....++.+..+.+..               +...+....+.+++..+...  .+.+++++...+...........     
T Consensus       180 ~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~  257 (368)
T d1mdah_         180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRK  257 (368)
T ss_dssp             CCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred             EEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceee
Confidence            223344444443321               22334556777777665544  45677777665544332211000     


Q ss_pred             ----CCCcceEEEEcCCCcEEEEecCC---------CcEEEEecCCCceeeeeeccCCCCceEEeCCCCc-E-EEEecCc
Q 036585          217 ----SRNSTLEASFSPEGMFVISGSGD---------GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL-M-FVTGSSE  281 (304)
Q Consensus       217 ----~~~~i~~~~~s~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-l~s~~~d  281 (304)
                          .......++++|++..++....+         ..|.+||..+++.+..+. +...+..++|+|||+ + ++++..+
T Consensus       258 ~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~  336 (368)
T d1mdah_         258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTT
T ss_pred             eeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCC
Confidence                01123347889998877665322         359999999999888876 445688999999996 3 3455554


Q ss_pred             --eEEeccCCcc
Q 036585          282 --LSFWIPDLSK  291 (304)
Q Consensus       282 --~~iw~~~~~~  291 (304)
                        +.+||....+
T Consensus       337 ~~v~v~D~~tgk  348 (368)
T d1mdah_         337 EVLDIYDAASDQ  348 (368)
T ss_dssp             TEEEEEESSSCE
T ss_pred             CeEEEEECCCCC
Confidence              9999986544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=4.7e-17  Score=128.64  Aligned_cols=235  Identities=10%  Similarity=0.043  Sum_probs=152.4

Q ss_pred             eeEEEEccCCCeEEEEecC--CCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcc----------cCCeEE
Q 036585           60 VDLVCFTSHPTTVIYSSKN--GWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGS----------LDRTVL  127 (304)
Q Consensus        60 v~~~~~~~~~~~l~~~~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~  127 (304)
                      +...+.+||++.+++....  ..+..|.+||..+++.+.++..+..+  .++|+|||++|++.+          .|+.|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            3444678999999876421  12667999999999998888755444  699999999887643          478999


Q ss_pred             EEeCCcceeeceEEEecc---------ceeEecCCCeEEE--e--cCCCeEEEEecC-----------------------
Q 036585          128 LWDQRAEKCQGLLRVQGR---------PAAAYDDQGLVFG--Y--EKGPLDIFSVGG-----------------------  171 (304)
Q Consensus       128 iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--~--~~~~~~~~~~~~-----------------------  171 (304)
                      +||+.+++....+.....         ..+.+++++..+.  .  ......+++...                       
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF  161 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcce
Confidence            999999887776654221         1344555553221  0  011111111110                       


Q ss_pred             -------------------------------CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeE--EEEeCC---
Q 036585          172 -------------------------------DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLS--TYNVKP---  215 (304)
Q Consensus       172 -------------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~---  215 (304)
                                                     +...+....+.+++..++.++.++.+++|++..++...  ......   
T Consensus       162 ~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  241 (355)
T d2bbkh_         162 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE  241 (355)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccce
Confidence                                           11223345666677778888889999999988765432  111000   


Q ss_pred             ----CCCCcceEEEEcCCCcEEEEecCC----------CcEEEEecCCCceeeeeeccCCCCceEEeCCCCc--EEEEec
Q 036585          216 ----VSRNSTLEASFSPEGMFVISGSGD----------GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSL--MFVTGS  279 (304)
Q Consensus       216 ----~~~~~i~~~~~s~~~~~l~~~~~d----------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~  279 (304)
                          ........++++|++..++....+          +.|.+||+.+++.+..+. +...+.+++|+|||+  ++++++
T Consensus       242 ~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~  320 (355)
T d2bbkh_         242 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALST  320 (355)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEET
T ss_pred             EeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEEC
Confidence                011223458899999988766433          369999999999888876 345578999999997  345666


Q ss_pred             Cc--eEEeccCCcc-cccccc
Q 036585          280 SE--LSFWIPDLSK-LGAYVG  297 (304)
Q Consensus       280 ~d--~~iw~~~~~~-~~~~~~  297 (304)
                      .|  +.+|+....+ ++.+.+
T Consensus       321 ~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         321 GDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             TTTEEEEEETTTCCEEEEECC
T ss_pred             CCCEEEEEECCCCCEEEEEeC
Confidence            55  9999986554 455543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.73  E-value=7.4e-16  Score=122.45  Aligned_cols=247  Identities=11%  Similarity=0.034  Sum_probs=164.8

Q ss_pred             EEEeeCCCeEEEEecCCcceeeeecc------------------------------cccceeEEEEccCCCeEEEEecCC
Q 036585           30 LVTASDDESIRLYDVTAATCLKTINS------------------------------KKYGVDLVCFTSHPTTVIYSSKNG   79 (304)
Q Consensus        30 l~~~~~d~~i~vw~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~~~~~   79 (304)
                      +++++.+|.|++|++.+++.++++.-                              |........++|||++|++.... 
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~-   92 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA-   92 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT-
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC-
Confidence            66788999999999999887776521                              12223445567999999888754 


Q ss_pred             CCCceEEEEccCceeeeecc-cccccEEEEEEcCCCC--EEEEcccCC-----------------eEEEEeCCcceeece
Q 036585           80 WDESLRLLSLHDNKYSRYFK-GHHDRVVLLSLCSSKD--CFISGSLDR-----------------TVLLWDQRAEKCQGL  139 (304)
Q Consensus        80 ~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~l~~~~~dg-----------------~i~iwd~~~~~~~~~  139 (304)
                       ++.|.++|+.+++....+. .+...+..++|+|+++  +++..+.+.                 .+..+|..+.+....
T Consensus        93 -~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          93 -NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             -TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             -CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence             8999999999998777654 3567889999999988  444444322                 245578877776666


Q ss_pred             EEEeccc-eeEecCCCeEEEe---c----------------------------------------CCCeEEEE-------
Q 036585          140 LRVQGRP-AAAYDDQGLVFGY---E----------------------------------------KGPLDIFS-------  168 (304)
Q Consensus       140 ~~~~~~~-~~~~~~~~~~~~~---~----------------------------------------~~~~~~~~-------  168 (304)
                      +.....+ .+.+++++..+..   .                                        ++...+..       
T Consensus       172 I~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         172 VIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             EecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence            6554433 4556666643310   0                                        11111111       


Q ss_pred             --ecCCCCCceEEEEecCCcEEEE-eeCCCeEEEEEcCCCce--------eEEEEeCCCCCCcceEEEEcCCCcEEEEec
Q 036585          169 --VGGDISDANVVKFSNDGRLMLL-TTMEGHIHVLDSFRGTL--------LSTYNVKPVSRNSTLEASFSPEGMFVISGS  237 (304)
Q Consensus       169 --~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~--------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  237 (304)
                        +.. ......+.++|||+++++ +..+++|.+||+.+...        ...+.......-.....+|+++|..+.+..
T Consensus       252 ~~IPv-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~  330 (441)
T d1qnia2         252 RYIPV-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLF  330 (441)
T ss_dssp             EEECC-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEET
T ss_pred             EEEeC-CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccc
Confidence              111 123466899999998765 67799999999865321        112221112222344568999998888899


Q ss_pred             CCCcEEEEecCC---------C-ceeeee-----eccCCCCceEEeCCCCcEEEEec
Q 036585          238 GDGSVHAWSVRS---------G-KEVASW-----MSFDTEPPVIKWAPGSLMFVTGS  279 (304)
Q Consensus       238 ~dg~i~v~d~~~---------~-~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~  279 (304)
                      .|..|..|++..         . ..+..+     .+|...+.+..++|||++|++++
T Consensus       331 ~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         331 IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             ccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            999999999742         1 123333     68888889999999999999993

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.67  E-value=3.5e-14  Score=116.41  Aligned_cols=116  Identities=5%  Similarity=0.029  Sum_probs=92.2

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeec-----ccccceeEEEEccCCCeEEEEecC------CCCCceEEE
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN-----SKKYGVDLVCFTSHPTTVIYSSKN------GWDESLRLL   87 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~------~~d~~i~vw   87 (304)
                      ..+.|+++++++..  .|+.+.+||+.+++....+.     .|...|.++.||||+++|++++..      +.++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            34778999988764  46789999999998765444     445679999999999999988531      115788999


Q ss_pred             EccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec
Q 036585           88 SLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  138 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  138 (304)
                      |+.+++. ..+..+...+..+.|+|||+.++.. .++.+++|+..+++...
T Consensus        98 d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~  146 (470)
T d2bgra1          98 DLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR  146 (470)
T ss_dssp             ETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred             ECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceee
Confidence            9999874 5577788999999999999999985 56789999988776543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.56  E-value=1.8e-11  Score=94.25  Aligned_cols=254  Identities=8%  Similarity=0.040  Sum_probs=149.3

Q ss_pred             eeEeecccCcEEEEeeC-------CCeEEEEecCCcceeeeeccc----ccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           19 EILQSMEVGIYLVTASD-------DESIRLYDVTAATCLKTINSK----KYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~-------d~~i~vw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      +-+.+.++|+++++...       +++|..||..+++........    ......++|.++++.++++..   ...|..+
T Consensus        21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~---~~~i~~~   97 (314)
T d1pjxa_          21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---RLGLLVV   97 (314)
T ss_dssp             EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---TTEEEEE
T ss_pred             eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC---CCeEEEE
Confidence            34678899998776433       467889998877654332221    223568999999998888876   6678888


Q ss_pred             EccCceeeeecccccc----cEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCC
Q 036585           88 SLHDNKYSRYFKGHHD----RVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGP  163 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (304)
                      +...+..........+    ....+++.++|++.++-.. +....++.......     .......+++++.        
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~-~~~~~~~~~~~~~~-----~~G~v~~~~~dg~--------  163 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA-GEVAPADYTRSMQE-----KFGSIYCFTTDGQ--------  163 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB-CBCTTSCCCBTTSS-----SCEEEEEECTTSC--------
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCc-cCcccccccceecc-----CCceEEEEeecCc--------
Confidence            8776543222211111    2467888888887666321 11111110000000     0000011111111        


Q ss_pred             eEEEEecCCCCCceEEEEecCCc-----EEEEeeCCCeEEEEEcCCCceeEE---EEe-CCCCCCcceEEEEcCCCcEEE
Q 036585          164 LDIFSVGGDISDANVVKFSNDGR-----LMLLTTMEGHIHVLDSFRGTLLST---YNV-KPVSRNSTLEASFSPEGMFVI  234 (304)
Q Consensus       164 ~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~dg~i~~~d~~~~~~~~~---~~~-~~~~~~~i~~~~~s~~~~~l~  234 (304)
                      .....  ......+.++|+|++.     ++++-+..+.|..||+.....+..   +.. ........-.+++.++|++.+
T Consensus       164 ~~~~~--~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyV  241 (314)
T d1pjxa_         164 MIQVD--TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV  241 (314)
T ss_dssp             EEEEE--EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE
T ss_pred             eeEee--CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEE
Confidence            11000  1112346789998764     444456788999998764333221   111 111223456799999999887


Q ss_pred             EecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEE-ecCceEEeccCCcc
Q 036585          235 SGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVT-GSSELSFWIPDLSK  291 (304)
Q Consensus       235 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~~d~~iw~~~~~~  291 (304)
                      +....+.|.+||.+.++.+..+......+++++|.|+++.|+. .+.+.+||.++...
T Consensus       242 a~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         242 ANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            7777889999998888777777666677899999999975544 44447777766544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=4.8e-12  Score=95.04  Aligned_cols=235  Identities=10%  Similarity=0.045  Sum_probs=149.2

Q ss_pred             ceeeEeecccCcEEEEe-eCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           17 SEEILQSMEVGIYLVTA-SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      .+..+.+.++|+++++. +..+.+..++..+................+++++++..+++...   .+.+++++-.+...+
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~---~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFN---NRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETT---TEEEEECTTCSCCEE
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeee---eceeeeeeeccceee
Confidence            45678888999866654 45577777765543322222222235678899999987766654   667777665555544


Q ss_pred             eecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCC
Q 036585           96 RYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISD  175 (304)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (304)
                      .... .......+++.++++++++-..+..+..++........ ...                            .....
T Consensus        92 ~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-~~~----------------------------~~~~~  141 (260)
T d1rwia_          92 LPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPF----------------------------TGLND  141 (260)
T ss_dssp             CCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-CCC----------------------------CSCCS
T ss_pred             eeee-eeeecccccccccceeEeeccccccccccccccceeee-eee----------------------------cccCC
Confidence            4333 23456889999999887776666667776654432111 100                            11234


Q ss_pred             ceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeee
Q 036585          176 ANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS  255 (304)
Q Consensus       176 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~  255 (304)
                      ...++++|+++.+++...++.|..+|........ +..  ........++++++|+++++....+.|..++...... ..
T Consensus       142 p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~-~~~--~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~  217 (260)
T d1rwia_         142 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-LPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TV  217 (260)
T ss_dssp             CCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-CCC--SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EE
T ss_pred             cceeeecCCCCEeeeccccccccccccccceeee-eec--cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EE
Confidence            5679999999988888888899999976543322 211  2345567899999999888888888888888654332 22


Q ss_pred             e-eccCCCCceEEeCCCCcEEEEecCceEEeccC
Q 036585          256 W-MSFDTEPPVIKWAPGSLMFVTGSSELSFWIPD  288 (304)
Q Consensus       256 ~-~~~~~~i~~~~~~~~~~~l~s~~~d~~iw~~~  288 (304)
                      + ...-.....|+++++|.++++-..+-+|+.++
T Consensus       218 ~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         218 LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             EccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            2 22234568999999998776645445666443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=8.6e-11  Score=89.02  Aligned_cols=238  Identities=9%  Similarity=0.104  Sum_probs=159.5

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeeccc------ccceeEEEEccCCCeEEEEecCCCCCceEEEEccC
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSK------KYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   91 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~   91 (304)
                      +.-+.+.++|+++++-..+..|++||.+ ++.+..+...      ......+++.++....+..... .++.|.+++.. 
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~-  101 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-PTHQIQIYNQY-  101 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-GGCEEEEECTT-
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccC-Ccccccccccc-
Confidence            4567888899988887788899999965 6666555321      1234456666555444443321 15677777754 


Q ss_pred             ceeeeecc-cccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           92 NKYSRYFK-GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        92 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      ++....+. ........+++.+++.++++....+.+.+++... +.+..+.                           ..
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g---------------------------~~  153 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFG---------------------------CS  153 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEE---------------------------CT
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeeccc---------------------------cc
Confidence            44444443 2345677888989888888777777788877542 2222221                           11


Q ss_pred             CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC-CCcEEEEecCC
Q 036585          171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG-DGSVHAWSVRS  249 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~v~d~~~  249 (304)
                      .+......+++.++++.+++....+.|++||. +++.+.++.. .+.......++++++|+.+++-.. ++.|.+|+ .+
T Consensus       154 ~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~  230 (279)
T d1q7fa_         154 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QD  230 (279)
T ss_dssp             TTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TT
T ss_pred             ccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEEC-CC
Confidence            23456677899999998888888999999995 5666666532 234455778999999997776543 45799998 56


Q ss_pred             Cceeeeeecc--CCCCceEEeCCCCcEEEEecCc-eEEeccCC
Q 036585          250 GKEVASWMSF--DTEPPVIKWAPGSLMFVTGSSE-LSFWIPDL  289 (304)
Q Consensus       250 ~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~  289 (304)
                      ++.+..+...  ......|++.|+|.++++.... |++|.+..
T Consensus       231 G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         231 GQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             SCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             CCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeee
Confidence            8877776432  3357899999999876665433 88887743

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.52  E-value=1.4e-11  Score=97.14  Aligned_cols=249  Identities=9%  Similarity=0.013  Sum_probs=147.4

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecc--cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc-ee-
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINS--KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-KY-   94 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~-~~-   94 (304)
                      ..+.+++++++|+++.. +.+..|.+.....+.....  .......++++++++.++........+.+..+.+... .. 
T Consensus        43 s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~  121 (365)
T d1jofa_          43 SWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG  121 (365)
T ss_dssp             SEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred             CEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcc
Confidence            45889999999988765 4677877664322222211  2234567888999986544332111455655543221 00 


Q ss_pred             --------------eee-cccccccEEEEEEcCCCCEEEEccc-CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEE
Q 036585           95 --------------SRY-FKGHHDRVVLLSLCSSKDCFISGSL-DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFG  158 (304)
Q Consensus        95 --------------~~~-~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (304)
                                    ... -......+.++.|+|+|++++++.. ...|.+|+.............               
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~---------------  186 (365)
T d1jofa_         122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV---------------  186 (365)
T ss_dssp             EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE---------------
T ss_pred             eeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce---------------
Confidence                          000 0111224689999999998887754 457888876543222111100               


Q ss_pred             ecCCCeEEEEecCCCCCceEEEEecCCcEEEEee-CCCeEEEEEcCCCceeEEEE--e---CC-----------CCCCcc
Q 036585          159 YEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGTLLSTYN--V---KP-----------VSRNST  221 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~--~---~~-----------~~~~~i  221 (304)
                               ...........++|+|+++++++.. .+++|.+|++..++......  .   ..           ......
T Consensus       187 ---------~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (365)
T d1jofa_         187 ---------DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRA  257 (365)
T ss_dssp             ---------ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred             ---------eecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCc
Confidence                     0011234678899999999886655 57899999987654332221  1   00           011234


Q ss_pred             eEEEEcCCCcEEEEecC------CCcEEEEecCCCceeeee------eccCCCCceEEeCC-CCcEEEEecCc---eEEe
Q 036585          222 LEASFSPEGMFVISGSG------DGSVHAWSVRSGKEVASW------MSFDTEPPVIKWAP-GSLMFVTGSSE---LSFW  285 (304)
Q Consensus       222 ~~~~~s~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~------~~~~~~i~~~~~~~-~~~~l~s~~~d---~~iw  285 (304)
                      ..+.++|||++|+++..      ...|..|++.....+...      .........++++| +|++|+++..+   +.+|
T Consensus       258 ~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~  337 (365)
T d1jofa_         258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             cceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEE
Confidence            57899999999988742      223777777543322211      12344568899998 78988877655   9999


Q ss_pred             ccCCccc
Q 036585          286 IPDLSKL  292 (304)
Q Consensus       286 ~~~~~~~  292 (304)
                      .++.+.+
T Consensus       338 ~~~~~~l  344 (365)
T d1jofa_         338 RWKDEFL  344 (365)
T ss_dssp             EEETTEE
T ss_pred             EEeCCcC
Confidence            8876554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=5.6e-11  Score=89.50  Aligned_cols=223  Identities=12%  Similarity=0.106  Sum_probs=135.9

Q ss_pred             eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEE
Q 036585           38 SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCF  117 (304)
Q Consensus        38 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  117 (304)
                      .|.|.|.. |.....+..+...+...+|||||+.|+..........+.+.+...+... .+..+........|+|+++.+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence            47777766 4444444445667889999999999998876433445666676665543 344467788899999999987


Q ss_pred             EEccc-CCe--EEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEe-eC
Q 036585          118 ISGSL-DRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLT-TM  193 (304)
Q Consensus       118 ~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~  193 (304)
                      +.... ++.  +..+...........                              ..........+++++..++.. ..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  147 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVT------------------------------DGRSNNTEPTWFPDSQNLAFTSDQ  147 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECC------------------------------CCSSCEEEEEECTTSSEEEEEECT
T ss_pred             eEeeecCCccceeecccccccceeee------------------------------eccccccccccccccccceecccc
Confidence            76543 222  222222221111110                              111223345566666655443 34


Q ss_pred             CC--eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-Cc--EEEEecCCCceeeeeeccCCCCceEEe
Q 036585          194 EG--HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-GS--VHAWSVRSGKEVASWMSFDTEPPVIKW  268 (304)
Q Consensus       194 dg--~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~--i~v~d~~~~~~~~~~~~~~~~i~~~~~  268 (304)
                      +|  .|.+.++..+......    ..........|+|+++.++..+.+ +.  +.+.+...+.  ..+..+........|
T Consensus       148 ~g~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~p~~  221 (269)
T d2hqsa1         148 AGRPQVYKVNINGGAPQRIT----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLSSTFLDETPSL  221 (269)
T ss_dssp             TSSCEEEEEETTSSCCEECC----CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--EEECCCSSSCEEEEE
T ss_pred             cCCceEeeeecccccceeee----cccccccccccccccceeEEEeecCCceeeeEeeccccc--ceEeecCccccceEE
Confidence            44  4666666655433222    355667778999999998876544 33  4445544443  233345566788899


Q ss_pred             CCCCcEEEEecCc-----eEEeccCCccccccccC
Q 036585          269 APGSLMFVTGSSE-----LSFWIPDLSKLGAYVGR  298 (304)
Q Consensus       269 ~~~~~~l~s~~~d-----~~iw~~~~~~~~~~~~~  298 (304)
                      +|||+.|+..+..     +.+++++.....++...
T Consensus       222 SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~  256 (269)
T d2hqsa1         222 APNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT  256 (269)
T ss_dssp             CTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCC
Confidence            9999988765543     77788888776665543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.50  E-value=2.6e-11  Score=93.03  Aligned_cols=235  Identities=14%  Similarity=-0.005  Sum_probs=152.0

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCcee-ee
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKY-SR   96 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~-~~   96 (304)
                      .+.+.+.++|+++++...+++|..|+... + ...+......+.+++|+++++.+++...   ++.+..++...... ..
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~---~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWN---ADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEEC---TTSCEEEEEECTTSCEE
T ss_pred             cCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecC---CceEEEEEeccccccee
Confidence            34578999999999999999998888653 3 2334445567899999999998888776   78888888754321 11


Q ss_pred             ec--ccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCC
Q 036585           97 YF--KGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDIS  174 (304)
Q Consensus        97 ~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (304)
                      .+  .........+.+.++++++++.+.++.+..+|...+...............                   ......
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~  165 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN-------------------SESVFP  165 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS-------------------TTCCSC
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceee-------------------ccCccc
Confidence            11  123456788999999998888888899999988776533222211100000                   001112


Q ss_pred             CceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce--
Q 036585          175 DANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE--  252 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~--  252 (304)
                      ....+.++. +.++++.+..+.|+.++............. ........++++++|+++++...++.|..++.. ++.  
T Consensus       166 ~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~  242 (302)
T d2p4oa1         166 AANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI  242 (302)
T ss_dssp             SEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred             ccccccccC-CceeeecCCCCeEEeccccccccccccccc-cCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEE
Confidence            344555543 345556677889999987654332221110 123345569999999988888888999999864 443  


Q ss_pred             eeeeeccCCCCceEEe---CCCCcEEEEec
Q 036585          253 VASWMSFDTEPPVIKW---APGSLMFVTGS  279 (304)
Q Consensus       253 ~~~~~~~~~~i~~~~~---~~~~~~l~s~~  279 (304)
                      +..........++++|   ++|++.|+.++
T Consensus       243 ~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         243 IAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             EECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             EEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence            2333334455789999   67888776543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.46  E-value=2.6e-13  Score=111.12  Aligned_cols=145  Identities=13%  Similarity=0.118  Sum_probs=109.3

Q ss_pred             EEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCC
Q 036585          106 VLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDG  185 (304)
Q Consensus       106 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  185 (304)
                      ..+.|.+++++++.  .++.+.+||+.+++....+....                        +..+...+.++.|||||
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~------------------------~~~~~~~i~~~~~SpDg   73 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENST------------------------FDEFGHSINDYSISPDG   73 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTT------------------------TTTSSSCCCEEEECTTS
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhh------------------------hhhccCccceeEECCCC
Confidence            35779999987764  46789999999988764432111                        12455678999999999


Q ss_pred             cEEEEeeC---------CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeee
Q 036585          186 RLMLLTTM---------EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       186 ~~l~~~~~---------dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  256 (304)
                      ++|+.++.         ++.+.+||+.+++... +.   .+...+..+.|||||+++|.. .++.+++|+..+++.....
T Consensus        74 ~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~-l~---~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t  148 (470)
T d2bgra1          74 QFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EE---RIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT  148 (470)
T ss_dssp             SEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SS---CCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC
T ss_pred             CEEEEEECCcceeeeccCceEEEEECCCCcccc-cc---cCCccccccccccCcceeeEe-ecccceEEECCCCceeeee
Confidence            99998753         5678999999887543 33   467788999999999999986 4678999999888765433


Q ss_pred             ec------------------cCCCCceEEeCCCCcEEEEecCc
Q 036585          257 MS------------------FDTEPPVIKWAPGSLMFVTGSSE  281 (304)
Q Consensus       257 ~~------------------~~~~i~~~~~~~~~~~l~s~~~d  281 (304)
                      ..                  ..+....+.|||||++|+....|
T Consensus       149 ~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             eccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            21                  22345678899999999998766

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.42  E-value=1.2e-09  Score=84.30  Aligned_cols=239  Identities=10%  Similarity=0.096  Sum_probs=149.2

Q ss_pred             eeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCC--CCceEEEEccCceeee
Q 036585           19 EILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGW--DESLRLLSLHDNKYSR   96 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--d~~i~vwd~~~~~~~~   96 (304)
                      +-+.+.++|+++++-...+.|..|+.++++....+.........+++.++|+.+++... +.  .+.+...+........
T Consensus        43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~-~~~~~~~i~~~~~~~~~~~~  121 (319)
T d2dg1a1          43 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLG-DFKSTGGIFAATENGDNLQD  121 (319)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECT-TSSSCCEEEEECTTSCSCEE
T ss_pred             EeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecC-CCccceeEEEEcCCCceeee
Confidence            34677788998888778899999998877665555555557889999999987776543 11  2334444444443322


Q ss_pred             eccc--ccccEEEEEEcCCCCEEEEccc------CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEE
Q 036585           97 YFKG--HHDRVVLLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFS  168 (304)
Q Consensus        97 ~~~~--~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (304)
                      ....  -......+.+.++|++.++...      .+.+..++...........                           
T Consensus       122 ~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~---------------------------  174 (319)
T d2dg1a1         122 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ---------------------------  174 (319)
T ss_dssp             EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE---------------------------
T ss_pred             eccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee---------------------------
Confidence            2221  1234678889999986665322      1223333333221111111                           


Q ss_pred             ecCCCCCceEEEEecCCcEEEEe-eCCCeEEEEEcCCC-ceeE----EEEeCCCCCCcceEEEEcCCCcEEEEecCCCcE
Q 036585          169 VGGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRG-TLLS----TYNVKPVSRNSTLEASFSPEGMFVISGSGDGSV  242 (304)
Q Consensus       169 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~-~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  242 (304)
                         .....+.++|+|+++.|+++ +..+.|+.||+... ....    ..............++++++|++.++....+.|
T Consensus       175 ---~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V  251 (319)
T d2dg1a1         175 ---NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV  251 (319)
T ss_dssp             ---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             ---ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEE
Confidence               11234679999999876554 56789999997642 2111    111111122335679999999988888888999


Q ss_pred             EEEecCCCceeeeee------ccCCCCceEEeCCCCcEEEEecCc------eEEeccCC
Q 036585          243 HAWSVRSGKEVASWM------SFDTEPPVIKWAPGSLMFVTGSSE------LSFWIPDL  289 (304)
Q Consensus       243 ~v~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~s~~~d------~~iw~~~~  289 (304)
                      .+||. +++.+.++.      ++...+++++|.|+...+++...+      ..||.++.
T Consensus       252 ~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         252 LVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             EEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             EEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence            99995 788877774      233457899999987766555433      66776644

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.41  E-value=2.2e-11  Score=96.63  Aligned_cols=175  Identities=9%  Similarity=0.023  Sum_probs=120.0

Q ss_pred             CCceEEEEccCceeeeecc------------------------------cccccEEEEEEcCCCCEEEEc-ccCCeEEEE
Q 036585           81 DESLRLLSLHDNKYSRYFK------------------------------GHHDRVVLLSLCSSKDCFISG-SLDRTVLLW  129 (304)
Q Consensus        81 d~~i~vwd~~~~~~~~~~~------------------------------~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw  129 (304)
                      +|.|++|++.+++.++.+.                              .|........+.|||++|++. ..+..|.++
T Consensus        20 sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavI   99 (441)
T d1qnia2          20 QGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARI   99 (441)
T ss_dssp             TCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEE
T ss_pred             CCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCEEEEE
Confidence            8888888888776555431                              133345556667899988665 467899999


Q ss_pred             eCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcE--EEEeeCCC------------
Q 036585          130 DQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRL--MLLTTMEG------------  195 (304)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg------------  195 (304)
                      |+++.+....+..+                            ....+..++|+|+|+.  ++..+.+.            
T Consensus       100 Dl~t~k~~~ii~iP----------------------------~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~  151 (441)
T d1qnia2         100 RLDIMKTDKITHIP----------------------------NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL  151 (441)
T ss_dssp             ETTTTEEEEEEECT----------------------------TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred             ECCCCcEeeEEecC----------------------------CCCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence            99999887766532                            2245677889988884  33333221            


Q ss_pred             -----eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-------------------------------
Q 036585          196 -----HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-------------------------------  239 (304)
Q Consensus       196 -----~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-------------------------------  239 (304)
                           .+..+|..+.+...++..    ......+.|+|+|+++++++.+                               
T Consensus       152 ~~~~~~~~~iD~~t~~v~~qI~v----~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         152 DNSYTMFTAIDAETMDVAWQVIV----DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             GGEEEEEEEEETTTCSEEEEEEE----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             ccccceEEeecCccceeeEEEec----CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence                 245688888888777763    3456779999999998877533                               


Q ss_pred             ----------CcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc---eEEeccC
Q 036585          240 ----------GSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPD  288 (304)
Q Consensus       240 ----------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~  288 (304)
                                +.+.+++....+.+..++.... ...+.++|||+++++++..   +.+|+++
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             CCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence                      3445555555555666655444 5889999999988765543   9999875

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=3.4e-10  Score=85.09  Aligned_cols=212  Identities=15%  Similarity=0.148  Sum_probs=130.8

Q ss_pred             eeEeecccCcEEEEeeCCC---eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc--cCce
Q 036585           19 EILQSMEVGIYLVTASDDE---SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL--HDNK   93 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~--~~~~   93 (304)
                      ..-.|+|||+.||......   .+.+.+..++.. ..+..+........|+|+++.++.....  ++...++..  ....
T Consensus        42 ~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~--~~~~~~~~~~~~~~~  118 (269)
T d2hqsa1          42 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSK--TGSLNLYVMDLASGQ  118 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECT--TSSCEEEEEETTTCC
T ss_pred             eeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeec--CCccceeeccccccc
Confidence            3567999999999765443   366666655544 3444566678889999999999987763  433333333  2232


Q ss_pred             eeeecccccccEEEEEEcCCCCEEE-EcccCC--eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           94 YSRYFKGHHDRVVLLSLCSSKDCFI-SGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        94 ~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      ..... ..........+++++..++ +...++  .|...++.........                              
T Consensus       119 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~------------------------------  167 (269)
T d2hqsa1         119 IRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT------------------------------  167 (269)
T ss_dssp             EEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC------------------------------
T ss_pred             ceeee-eccccccccccccccccceecccccCCceEeeeecccccceeee------------------------------
Confidence            22222 2344445566777666444 334444  4555555544322111                              


Q ss_pred             CCCCCceEEEEecCCcEEEEeeCCC---eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecC---CCcEEE
Q 036585          171 GDISDANVVKFSNDGRLMLLTTMEG---HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSG---DGSVHA  244 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~v  244 (304)
                      ..........|+|+++.++..+.++   .+.+.+...+..  ...   ..........|||||++|+..+.   ...|++
T Consensus       168 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~---~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~  242 (269)
T d2hqsa1         168 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVL---SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNL  242 (269)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EEC---CCSSSCEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred             cccccccccccccccceeEEEeecCCceeeeEeecccccc--eEe---ecCccccceEECCCCCEEEEEEcCCCCcEEEE
Confidence            1223455678999999888766544   455555554432  222   24455677899999999875543   346899


Q ss_pred             EecCCCceeeeeeccCCCCceEEeCC
Q 036585          245 WSVRSGKEVASWMSFDTEPPVIKWAP  270 (304)
Q Consensus       245 ~d~~~~~~~~~~~~~~~~i~~~~~~~  270 (304)
                      +++..+.. ..+....+.+...+|+|
T Consensus       243 ~~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         243 VSTDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             EECCCCCE-EEEeCCCCcEEeEEeCC
Confidence            99876554 55656677788889998

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.30  E-value=4.5e-09  Score=80.32  Aligned_cols=211  Identities=10%  Similarity=-0.002  Sum_probs=137.5

Q ss_pred             cceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeE
Q 036585           47 ATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTV  126 (304)
Q Consensus        47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  126 (304)
                      .+.+..+.... .+..++++|||+.+++...   +++|..|+....  ...+......+.+++|.++|+++++...++.+
T Consensus        18 ~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~---~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~   91 (302)
T d2p4oa1          18 AKIITSFPVNT-FLENLASAPDGTIFVTNHE---VGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSI   91 (302)
T ss_dssp             EEEEEEECTTC-CEEEEEECTTSCEEEEETT---TTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred             ccEEEECCCCC-CcCCEEECCCCCEEEEeCC---CCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceE
Confidence            34444444322 4778999999998888777   888888886543  23344466789999999999988888888888


Q ss_pred             EEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCc
Q 036585          127 LLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT  206 (304)
Q Consensus       127 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  206 (304)
                      ..++.............                          .......+.+++.++++++++.+.++.+..+|...+.
T Consensus        92 ~~~~~~~~~~~~~~~~~--------------------------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1          92 PVVSLVKSDGTVETLLT--------------------------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             EEEEEECTTSCEEEEEE--------------------------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEecccccceeeccc--------------------------cCCccccceeEEccCCCEEeeccccccceeeeccCCc
Confidence            88776543221111100                          0123456789999999998888889999999988765


Q ss_pred             eeEEEEeC-------CCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeee--eeccCCCCceEEeCCCCcEEEE
Q 036585          207 LLSTYNVK-------PVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVAS--WMSFDTEPPVIKWAPGSLMFVT  277 (304)
Q Consensus       207 ~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s  277 (304)
                      ........       .........+.++. +..+++.+..+.|+.++.........  ..........+++.++|+++++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va  224 (302)
T d2p4oa1         146 GSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA  224 (302)
T ss_dssp             EEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE
T ss_pred             ceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEE
Confidence            44333311       01112344566653 33455566788898888765433222  1223455788999999997777


Q ss_pred             ecCc--eEEeccCCc
Q 036585          278 GSSE--LSFWIPDLS  290 (304)
Q Consensus       278 ~~~d--~~iw~~~~~  290 (304)
                      ...+  +..++.+.+
T Consensus       225 ~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         225 THIYNSVVRIAPDRS  239 (302)
T ss_dssp             CBTTCCEEEECTTCC
T ss_pred             EcCCCcEEEECCCCC
Confidence            6555  666666554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=1.1e-09  Score=81.78  Aligned_cols=198  Identities=11%  Similarity=0.009  Sum_probs=125.4

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceee
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQ  137 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  137 (304)
                      .....+++.++|+..++....  .+.+..++............-......+++.++++++++....+.+++++..+....
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGM--YGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSS--SCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCC--CCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceee
Confidence            356899999999877665442  567777765543322222111234567889999988887777777776654443322


Q ss_pred             ceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCC
Q 036585          138 GLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVS  217 (304)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  217 (304)
                      ...                              ........+++.++++++++-..+..+..++...........   ..
T Consensus        92 ~~~------------------------------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~  138 (260)
T d1rwia_          92 LPF------------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF---TG  138 (260)
T ss_dssp             CCC------------------------------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC---CS
T ss_pred             eee------------------------------eeeeecccccccccceeEeeccccccccccccccceeeeeee---cc
Confidence            111                              112346789999999988777777778888765543222111   22


Q ss_pred             CCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc--eEEeccCCc
Q 036585          218 RNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPDLS  290 (304)
Q Consensus       218 ~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~~~  290 (304)
                      ......++++|+++.+++...++.|..+|...................|++.++|+++++-...  +..++.+..
T Consensus       139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             cCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            3455789999999988888888889999976544333223344567889999999887777665  444444443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.19  E-value=2.5e-08  Score=76.44  Aligned_cols=203  Identities=11%  Similarity=0.058  Sum_probs=126.9

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccc----cceeEEEEccCCCeEEEEecC------------CCC
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKK----YGVDLVCFTSHPTTVIYSSKN------------GWD   81 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~~------------~~d   81 (304)
                      +..+.+.++|+.++++.....+...+.+............    ...+.+++.++|...++-...            ...
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            3457788889888888777778888876543222111111    236789999999877764321            012


Q ss_pred             CceEEEEccCceeeeecccccccEEEEEEcCCCC-----EEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeE
Q 036585           82 ESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKD-----CFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLV  156 (304)
Q Consensus        82 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (304)
                      +.|..++.. ++..... ........++|+|++.     ++++-+..+.|..||+............             
T Consensus       153 G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~-------------  217 (314)
T d1pjxa_         153 GSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVW-------------  217 (314)
T ss_dssp             EEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEE-------------
T ss_pred             ceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEE-------------
Confidence            344444432 3322222 2333456788988764     4445567788888887543322211100             


Q ss_pred             EEecCCCeEEEEecC-CCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEE-E
Q 036585          157 FGYEKGPLDIFSVGG-DISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV-I  234 (304)
Q Consensus       157 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~  234 (304)
                                ..+.. .......+++.++|++.++....+.|.+||.+.++....+.   ......++++|.||++.| +
T Consensus       218 ----------~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~---~p~~~~t~~afg~d~~~lyV  284 (314)
T d1pjxa_         218 ----------GHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFV  284 (314)
T ss_dssp             ----------EECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEE
T ss_pred             ----------EEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE---CCCCCEEEEEEeCCCCEEEE
Confidence                      00001 11234568999999988887788999999988888777776   344677899999998754 5


Q ss_pred             EecCCCcEEEEecC
Q 036585          235 SGSGDGSVHAWSVR  248 (304)
Q Consensus       235 ~~~~dg~i~v~d~~  248 (304)
                      +.+.+|.|..+++.
T Consensus       285 t~~~~g~i~~~~~~  298 (314)
T d1pjxa_         285 TEHENNAVWKFEWQ  298 (314)
T ss_dssp             EETTTTEEEEEECS
T ss_pred             EECCCCcEEEEECC
Confidence            56677888888864

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.18  E-value=1.2e-07  Score=71.90  Aligned_cols=221  Identities=14%  Similarity=0.083  Sum_probs=142.3

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeee
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~   97 (304)
                      ++.+-...+++++.+--..+.|..||.++++.. .+.. ...+.++++.+++..+++ +    ...+.++|..+++....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~-~~~~~~i~~~~dg~l~va-~----~~gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIA-S----DDGLFLRDTATGVLTLH   93 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEE-E----TTEEEEEETTTCCEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC-CCCcEEEEEecCCCEEEE-E----eCccEEeecccceeeEE
Confidence            333433345666666667788999998877643 3322 346788999988866654 4    34688999998865432


Q ss_pred             cc--c--ccccEEEEEEcCCCCEEEEccc----CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEe
Q 036585           98 FK--G--HHDRVVLLSLCSSKDCFISGSL----DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSV  169 (304)
Q Consensus        98 ~~--~--~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (304)
                      ..  .  ....+..+.+.|+|++.++...    .+.-.+|.+..++......                            
T Consensus        94 ~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~----------------------------  145 (295)
T d2ghsa1          94 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA----------------------------  145 (295)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE----------------------------
T ss_pred             eeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee----------------------------
Confidence            21  1  1235788899999987665432    1233445444443322221                            


Q ss_pred             cCCCCCceEEEEecCCcEEEEe-eCCCeEEEEEcCCCc-----eeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEE
Q 036585          170 GGDISDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGT-----LLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVH  243 (304)
Q Consensus       170 ~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~-----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  243 (304)
                        .....+.++|+++++.++.+ +..+.|..|++....     ....+.......+....++++.+|++.++.-..+.|.
T Consensus       146 --~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~  223 (295)
T d2ghsa1         146 --DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD  223 (295)
T ss_dssp             --EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             --ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceE
Confidence              11234678999999866554 567889999874211     1122222223455678899999999877766778899


Q ss_pred             EEecCCCceeeeeeccCCCCceEEeC-CCCcEEE
Q 036585          244 AWSVRSGKEVASWMSFDTEPPVIKWA-PGSLMFV  276 (304)
Q Consensus       244 v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~  276 (304)
                      .||. +++.+..+.-....+++++|- ||.+.|+
T Consensus       224 ~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         224 RYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             EECT-TCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred             EecC-CCcEeeEecCCCCceEEEEEeCCCCCEEE
Confidence            9994 788888887666678999995 5665444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.8e-10  Score=89.67  Aligned_cols=249  Identities=7%  Similarity=0.034  Sum_probs=141.4

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecCCcceeeeecc---cccceeEEEEccCCCeEEEEecC------CCCCceEEEEccC
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVTAATCLKTINS---KKYGVDLVCFTSHPTTVIYSSKN------GWDESLRLLSLHD   91 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~------~~d~~i~vwd~~~   91 (304)
                      ..|++++.++.. ..+|.|.+||+.+++....+..   ....+....||||+++++.....      +..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            467888877654 4578899999998775443333   22367788999999998887531      1257889999998


Q ss_pred             ceeeee--cccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEecc--------------------ceeE
Q 036585           92 NKYSRY--FKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGR--------------------PAAA  149 (304)
Q Consensus        92 ~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------------------~~~~  149 (304)
                      ++....  .......+....|+|+|+.++... ++.|.+.+...+...+.......                    ..+-
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            865433  222344566789999999888765 57788888776654433221110                    1223


Q ss_pred             ecCCCeEEEe---cCCCeEEEEecCC----CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeC---CCCCC
Q 036585          150 YDDQGLVFGY---EKGPLDIFSVGGD----ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVK---PVSRN  219 (304)
Q Consensus       150 ~~~~~~~~~~---~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~~  219 (304)
                      |+|++..+.+   ++..+..+.+...    ...+..+.+..-|..    .....+.++|+.++.........   .....
T Consensus       180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~----np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~  255 (465)
T d1xfda1         180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (465)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCC----CCceeEEEEecCCCcEEEEEeccCcCccccc
Confidence            4555533322   2233333332211    111222222111110    00124667777655433221110   01223


Q ss_pred             cceEEEEcCCCcEEEEecC----CCcEEEEecCCCceeeeeecc-CCCC----ceEEeCCCCcEE
Q 036585          220 STLEASFSPEGMFVISGSG----DGSVHAWSVRSGKEVASWMSF-DTEP----PVIKWAPGSLMF  275 (304)
Q Consensus       220 ~i~~~~~s~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~-~~~i----~~~~~~~~~~~l  275 (304)
                      .+..+.|+|++++++....    ...|.++|..+++....+... .+.|    ....|+|||+.+
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence            4678899999987665432    235888999998875544322 2222    346799999754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.9e-09  Score=84.03  Aligned_cols=263  Identities=10%  Similarity=0.035  Sum_probs=145.3

Q ss_pred             eeEeecccCcEEEEee---------CCCeEEEEecCCcceeee--ecccccceeEEEEccCCCeEEEEecCCCCCceEEE
Q 036585           19 EILQSMEVGIYLVTAS---------DDESIRLYDVTAATCLKT--INSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLL   87 (304)
Q Consensus        19 ~~i~~~~~~~~l~~~~---------~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vw   87 (304)
                      ....++|||++++.+.         ..+.+.++|+.+++....  .......+....|||+|+.++...    ++.|.+.
T Consensus        64 ~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~----~~nl~~~  139 (465)
T d1xfda1          64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF----ENNIYYC  139 (465)
T ss_dssp             SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE----TTEEEEE
T ss_pred             ceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe----cceEEEE
Confidence            3457899999988764         356788999988765433  222344566789999999999988    7889888


Q ss_pred             EccCceeeeecc-ccccc-----------------EEEEEEcCCCCEEEEccc-CCeEEEEeCCc--cee---eceEEEe
Q 036585           88 SLHDNKYSRYFK-GHHDR-----------------VVLLSLCSSKDCFISGSL-DRTVLLWDQRA--EKC---QGLLRVQ  143 (304)
Q Consensus        88 d~~~~~~~~~~~-~~~~~-----------------v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~~---~~~~~~~  143 (304)
                      +..+++.++... +..+.                 -.++.|||||++|+.... +..+..+.+..  ...   ...++.+
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp  219 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence            887765544332 11111                 146789999999988753 34444444321  110   1111100


Q ss_pred             ccceeEecCCCeEE--EecCCCeEEEEec-----CCCCCceEEEEecCCcEEEEeeC----CCeEEEEEcCCCceeEEEE
Q 036585          144 GRPAAAYDDQGLVF--GYEKGPLDIFSVG-----GDISDANVVKFSNDGRLMLLTTM----EGHIHVLDSFRGTLLSTYN  212 (304)
Q Consensus       144 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~~~~  212 (304)
                      .  .-...+...+.  ..+.+........     .....+..+.|+|++++++....    ...+.++|..+++....+.
T Consensus       220 ~--~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         220 K--AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             B--TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             c--cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence            0  00001111111  1111221111111     11223567899999986665432    2368889999998766554


Q ss_pred             eCCCCCCc----ceEEEEcCCCcEEE---EecCCC--cEEEEecC------CCceeeeeeccCCCCceE-EeCCCCcEEE
Q 036585          213 VKPVSRNS----TLEASFSPEGMFVI---SGSGDG--SVHAWSVR------SGKEVASWMSFDTEPPVI-KWAPGSLMFV  276 (304)
Q Consensus       213 ~~~~~~~~----i~~~~~s~~~~~l~---~~~~dg--~i~v~d~~------~~~~~~~~~~~~~~i~~~-~~~~~~~~l~  276 (304)
                      ..  ....    -....|+|||+.++   ....+|  .++..++.      .++.+..+....-.|..+ .|+++++.++
T Consensus       298 e~--~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vy  375 (465)
T d1xfda1         298 DE--SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIY  375 (465)
T ss_dssp             EE--CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEE
T ss_pred             Ec--CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEE
Confidence            22  1221    23467999998433   222333  34444432      233344554445556665 5888776554


Q ss_pred             -EecCc----eEEeccCC
Q 036585          277 -TGSSE----LSFWIPDL  289 (304)
Q Consensus       277 -s~~~d----~~iw~~~~  289 (304)
                       ++..+    -.||.+++
T Consensus       376 F~a~~~~p~~~hly~v~l  393 (465)
T d1xfda1         376 FLSTEDLPRRRQLYSANT  393 (465)
T ss_dssp             EEESSSCTTCCEEEEECS
T ss_pred             EEEeCCCCCceEEEEEEC
Confidence             44433    45776654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.13  E-value=3.5e-08  Score=77.37  Aligned_cols=165  Identities=10%  Similarity=-0.014  Sum_probs=104.8

Q ss_pred             ceeeEeecccCcEEEEeeC-CCeEEEEecCCc-cee--eeec--ccccceeEEEEccCCCeEEEEecCCCCCceEEEEcc
Q 036585           17 SEEILQSMEVGIYLVTASD-DESIRLYDVTAA-TCL--KTIN--SKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLH   90 (304)
Q Consensus        17 ~~~~i~~~~~~~~l~~~~~-d~~i~vw~~~~~-~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~   90 (304)
                      |...+.++|+|++++++.. ...|.+|+.... ...  ..+.  ........++|+|+++++++....  +++|.+|++.
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~--~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA--GNRICEYVID  223 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT--TTEEEEEEEC
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC--CCEEEEEEec
Confidence            4567899999998888864 347888876532 221  1111  234578899999999999888764  8999999987


Q ss_pred             Cceeeeec-------------------ccccccEEEEEEcCCCCEEEEccc------CCeEEEEeCCcceeeceEEEecc
Q 036585           91 DNKYSRYF-------------------KGHHDRVVLLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLRVQGR  145 (304)
Q Consensus        91 ~~~~~~~~-------------------~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~  145 (304)
                      .++.....                   ..+......+.++|+|++|+++..      .+.|..|++.....+.....   
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~---  300 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF---  300 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE---
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeE---
Confidence            65322111                   012234567899999999888642      23466666654322211110   


Q ss_pred             ceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec-CCcEEEEe-eCCCeEEEEEcCCCc
Q 036585          146 PAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN-DGRLMLLT-TMEGHIHVLDSFRGT  206 (304)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~~dg~i~~~d~~~~~  206 (304)
                                          +............++++| +|++|+++ ..++.|.+|+++...
T Consensus       301 --------------------~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         301 --------------------LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             --------------------EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             --------------------eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence                                000011223456799998 78988776 467899999876544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.12  E-value=4.6e-08  Score=73.51  Aligned_cols=234  Identities=10%  Similarity=0.011  Sum_probs=127.7

Q ss_pred             eeccc--CcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecC-CCC--CceEEEEccCceeee
Q 036585           22 QSMEV--GIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-GWD--ESLRLLSLHDNKYSR   96 (304)
Q Consensus        22 ~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~d--~~i~vwd~~~~~~~~   96 (304)
                      ..+|+  |+.+|..+ ++.|.+.|+.+++.. .+..+...+...+|||||+.|+..... +.+  ..|.+++..+++..+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35688  99888775 457888899877754 566566678899999999999977531 112  347777887776544


Q ss_pred             eccc------ccccEEEEEEcCCCCEEEEccc------CCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCe
Q 036585           97 YFKG------HHDRVVLLSLCSSKDCFISGSL------DRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPL  164 (304)
Q Consensus        97 ~~~~------~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (304)
                      ....      .........|+|+++.++....      ...+...+.........                         
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  137 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL-------------------------  137 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC-------------------------
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe-------------------------
Confidence            3221      1224467889999998876432      12344444443322111                         


Q ss_pred             EEEEecCCCCCceEEEEecCCcEEEEeeCC-----------CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEE
Q 036585          165 DIFSVGGDISDANVVKFSNDGRLMLLTTME-----------GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFV  233 (304)
Q Consensus       165 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  233 (304)
                             .........+.+.+..++.....           ............... ..   ..........++++. .+
T Consensus       138 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~-~~  205 (281)
T d1k32a2         138 -------NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK-IV---DMSTHVSSPVIVGHR-IY  205 (281)
T ss_dssp             -------CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE-EE---CCSSCCEEEEEETTE-EE
T ss_pred             -------cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceee-cc---CCccccceeeeeccc-cc
Confidence                   11112222222222333322211           111222222222222 22   233444455666654 33


Q ss_pred             EEecC--CCcEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEecCc-eEEeccCCccccccc
Q 036585          234 ISGSG--DGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIPDLSKLGAYV  296 (304)
Q Consensus       234 ~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~~~~~~~~~~  296 (304)
                      .....  ...|+++|+.+++. ..+..+ .......|+|||+.|+..... +.+++++..+.+.+.
T Consensus       206 ~~~~~~~~~~l~~~d~~g~~~-~~lt~~-~~~~~~~~SpDG~~I~f~~~~~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         206 FITDIDGFGQIYSTDLDGKDL-RKHTSF-TDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             EEECTTSSCEEEEEETTSCSC-EECCCC-CSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECC
T ss_pred             eecccccccceEEEeCCCCce-EEeecC-CCcccccCcCCCCEEEEEeCCEEEEEECCCCCEEEec
Confidence            33333  33588888876654 333322 223345799999887764443 877888777766553

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.10  E-value=7.3e-08  Score=73.98  Aligned_cols=203  Identities=7%  Similarity=0.079  Sum_probs=124.6

Q ss_pred             ceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEccc----CCeEEEEeCCcc
Q 036585           59 GVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL----DRTVLLWDQRAE  134 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~  134 (304)
                      .+..++|.++|+..++-..   .+.|..|+..+++....+.........+++.++|+++++...    .+.+...+....
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~---~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVF---EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CEEEEEECTTSCEEEEETT---TCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CcEeCEECCCCCEEEEECC---CCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            4568899999986655555   889999998877655555545567789999999987776432    233444444433


Q ss_pred             eeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeC------CCeEEEEEcCCCcee
Q 036585          135 KCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTM------EGHIHVLDSFRGTLL  208 (304)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~  208 (304)
                      ........                           .......+.+++.++|++.++...      .+.+..++...+...
T Consensus       118 ~~~~~~~~---------------------------~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~  170 (319)
T d2dg1a1         118 NLQDIIED---------------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT  170 (319)
T ss_dssp             SCEEEECS---------------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE
T ss_pred             eeeeeccC---------------------------CCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE
Confidence            32211110                           011234677899999986555322      234666665433322


Q ss_pred             EEEEeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecCCC-ceeeee-------eccCCCCceEEeCCCCcEEEEec
Q 036585          209 STYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVRSG-KEVASW-------MSFDTEPPVIKWAPGSLMFVTGS  279 (304)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~-~~~~~~-------~~~~~~i~~~~~~~~~~~l~s~~  279 (304)
                      ....    .-...+.++|+|+++.|+.+ +..+.|+.|++... ......       .........+++.++|++.++..
T Consensus       171 ~~~~----~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~  246 (319)
T d2dg1a1         171 PIIQ----NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY  246 (319)
T ss_dssp             EEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE
T ss_pred             EEee----ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc
Confidence            2222    22345679999999876555 56788999998642 221111       11112356799999998776655


Q ss_pred             Cc--eEEeccCCcccccc
Q 036585          280 SE--LSFWIPDLSKLGAY  295 (304)
Q Consensus       280 ~d--~~iw~~~~~~~~~~  295 (304)
                      ..  |.+++.+.+.+..+
T Consensus       247 ~~g~V~~~~p~G~~l~~i  264 (319)
T d2dg1a1         247 GQGRVLVFNKRGYPIGQI  264 (319)
T ss_dssp             TTTEEEEECTTSCEEEEE
T ss_pred             CCCEEEEECCCCcEEEEE
Confidence            44  88888877666544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.06  E-value=2.1e-07  Score=69.91  Aligned_cols=190  Identities=13%  Similarity=0.173  Sum_probs=128.2

Q ss_pred             CcEEEE-eeCCCeEEEEecCCcceeeeecc-cccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeec--cccc
Q 036585           27 GIYLVT-ASDDESIRLYDVTAATCLKTINS-KKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYF--KGHH  102 (304)
Q Consensus        27 ~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~--~~~~  102 (304)
                      +.++++ .+.++.|.+++. .++....+.. .......+++.+++..+++...   .+.+.+++.. ++.+..+  ..+.
T Consensus        82 ~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~---~~~~~~~~~~-g~~~~~~g~~~~~  156 (279)
T d1q7fa_          82 GDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECK---VMRVIIFDQN-GNVLHKFGCSKHL  156 (279)
T ss_dssp             TEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETT---TTEEEEECTT-SCEEEEEECTTTC
T ss_pred             cccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeec---cceeeEeccC-Cceeecccccccc
Confidence            334433 344556777774 4555555532 3345778999999987777765   7778888754 4444443  2355


Q ss_pred             ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEe
Q 036585          103 DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFS  182 (304)
Q Consensus       103 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  182 (304)
                      .....+++.++++.+++....+.|++||... +....+..                           .+.......+++.
T Consensus       157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~~~~~g~---------------------------~g~~~~P~giavD  208 (279)
T d1q7fa_         157 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIGG---------------------------EGITNYPIGVGIN  208 (279)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEESC---------------------------TTTSCSEEEEEEC
T ss_pred             cccceeeeccceeEEeeeccccceeeeecCC-ceeeeecc---------------------------cccccCCcccccc
Confidence            6778899999998888888889999998653 32222210                           1233456789999


Q ss_pred             cCCcEEEEeeC-CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCce
Q 036585          183 NDGRLMLLTTM-EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKE  252 (304)
Q Consensus       183 ~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~  252 (304)
                      ++|+.+++-.. ++.|.+|+ .+|+.+.++.... .......+++.|+|.+++ ++.++.|++|......+
T Consensus       209 ~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~-~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         209 SNGEILIADNHNNFNLTIFT-QDGQLISALESKV-KHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             TTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS-CCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             cCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC-CCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            99997766443 45799998 5788877776432 334578899999997655 45788999999876544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.70  E-value=2.2e-05  Score=59.04  Aligned_cols=194  Identities=12%  Similarity=0.067  Sum_probs=122.2

Q ss_pred             eecceeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeec--c--cccceeEEEEccCCCeEEEEecC-CCCCceEEEE
Q 036585           14 LELSEEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTIN--S--KKYGVDLVCFTSHPTTVIYSSKN-GWDESLRLLS   88 (304)
Q Consensus        14 ~~~~~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~--~~~~v~~~~~~~~~~~l~~~~~~-~~d~~i~vwd   88 (304)
                      +......+...++|+++++ +.+ .+.++|..+++......  .  ....++.+.+.|+|...++.... ...+.-.+|.
T Consensus        57 ~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          57 LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEee
Confidence            3344455666677877665 455 48899998887543322  1  12357889999999876665431 1123456777


Q ss_pred             ccCceeeeecccccccEEEEEEcCCCCEEE-EcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEE
Q 036585           89 LHDNKYSRYFKGHHDRVVLLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIF  167 (304)
Q Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (304)
                      +..++...... .-.....+.|+++++.++ +-+..+.|..+++........-.                     .....
T Consensus       135 ~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~---------------------~~~~~  192 (295)
T d2ghsa1         135 VAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK---------------------AEVFI  192 (295)
T ss_dssp             EETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC---------------------CEEEE
T ss_pred             ecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccc---------------------eEEEe
Confidence            77776544443 233457899999998654 45567888888875322111000                     00011


Q ss_pred             EecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEc-CCCcEEEE
Q 036585          168 SVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFS-PEGMFVIS  235 (304)
Q Consensus       168 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~  235 (304)
                      ...+.......+++..+|++.++.-..+.|..|| .+++.+..+..   ....+++++|- ||.+.|+.
T Consensus       193 ~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~l---P~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         193 DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEV---PGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEEC---SCSBEEEEEEESTTSCEEEE
T ss_pred             ccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecC---CCCceEEEEEeCCCCCEEEE
Confidence            1122334567789999999777777788999999 57888888884   34568999996 56655543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.63  E-value=8.7e-06  Score=60.59  Aligned_cols=198  Identities=10%  Similarity=0.056  Sum_probs=108.1

Q ss_pred             EEccC--CCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEccc----C--CeEEEEeCCcce
Q 036585           64 CFTSH--PTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSL----D--RTVLLWDQRAEK  135 (304)
Q Consensus        64 ~~~~~--~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d--g~i~iwd~~~~~  135 (304)
                      ..+|+  |+.++..+    ++.|.+.|+.+++.. .+..+.+.+....|+|||+.|+....    +  ..|.+++...++
T Consensus         5 ~~sPdi~G~~v~f~~----~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC----CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEE----TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEe----CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            45788  99999887    778999999988754 45556778899999999998886532    1  247777777665


Q ss_pred             eeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC------CeEEEEEcCCCceeE
Q 036585          136 CQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME------GHIHVLDSFRGTLLS  209 (304)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~  209 (304)
                      ...........                       ...........|+|+|+.++.....      ..+...+...+....
T Consensus        80 ~~~lt~~~~~~-----------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (281)
T d1k32a2          80 IKRITYFSGKS-----------------------TGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP  136 (281)
T ss_dssp             EEECCCCCEEE-----------------------ETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE
T ss_pred             eEEeeecCCCc-----------------------cCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE
Confidence            54322110000                       0111234668899999988875332      235556655444322


Q ss_pred             EEEeCCCCCCcceEEEEcCCCcEEEEecCCC-----------cEEEEecCCCceeeeeeccCCCCceEEeCCCCcEEEEe
Q 036585          210 TYNVKPVSRNSTLEASFSPEGMFVISGSGDG-----------SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTG  278 (304)
Q Consensus       210 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----------~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  278 (304)
                      .      .........+.+++..++....+.           ........... ...............++++..+....
T Consensus       137 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (281)
T d1k32a2         137 L------NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIVDMSTHVSSPVIVGHRIYFITD  209 (281)
T ss_dssp             C------CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEECCSSCCEEEEEETTEEEEEEC
T ss_pred             e------cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccc-eeeccCCccccceeeeeccccceecc
Confidence            1      223333344444444444443221           11222222222 22223344445566666665444333


Q ss_pred             cCc---eEEeccCCccccccc
Q 036585          279 SSE---LSFWIPDLSKLGAYV  296 (304)
Q Consensus       279 ~~d---~~iw~~~~~~~~~~~  296 (304)
                      ...   +.+++++...++.+.
T Consensus       210 ~~~~~~l~~~d~~g~~~~~lt  230 (281)
T d1k32a2         210 IDGFGQIYSTDLDGKDLRKHT  230 (281)
T ss_dssp             TTSSCEEEEEETTSCSCEECC
T ss_pred             cccccceEEEeCCCCceEEee
Confidence            222   555566666655543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.60  E-value=2e-05  Score=60.97  Aligned_cols=253  Identities=11%  Similarity=0.037  Sum_probs=136.4

Q ss_pred             ccCcEEEEee-CCCeEEEEecCCcceeeeeccc-ccceeEEEEcc--CCCeEEEEecCC---------------CCCceE
Q 036585           25 EVGIYLVTAS-DDESIRLYDVTAATCLKTINSK-KYGVDLVCFTS--HPTTVIYSSKNG---------------WDESLR   85 (304)
Q Consensus        25 ~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~~~---------------~d~~i~   85 (304)
                      +||+||+... .+++|-+-|+.+.+..+.+... ...+..+...+  +..+++..+...               +.+.+.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            4799988776 5788999999998876644432 23566666654  455666655410               113466


Q ss_pred             EEEccCceeeeecccccccEEEEEEcCCCCEEEEcccCC--eEEEEeCCcceeeceEEEeccceeEecC-------CCe-
Q 036585           86 LLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDR--TVLLWDQRAEKCQGLLRVQGRPAAAYDD-------QGL-  155 (304)
Q Consensus        86 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~-  155 (304)
                      ++|..+.+....+. -.+....++++++|+++++.+.+.  .+.+.++....................+       ++. 
T Consensus       177 ~ID~~tm~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         177 AVDADKWEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EEETTTTEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEecCCceEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            78888777655544 234566789999999988876432  1111111111110000000000000000       010 


Q ss_pred             EEEecC--CCeEEEEecCCCCCceEEEEecCCcEEEEee-CCCeEEEEEcCCCc--------eeEEEEeCCCCCCcceEE
Q 036585          156 VFGYEK--GPLDIFSVGGDISDANVVKFSNDGRLMLLTT-MEGHIHVLDSFRGT--------LLSTYNVKPVSRNSTLEA  224 (304)
Q Consensus       156 ~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~--------~~~~~~~~~~~~~~i~~~  224 (304)
                      ++...+  +...+..+.- ......+.++|||+++++++ .+.++.++|+++-.        ........+...-....-
T Consensus       256 VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht  334 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT  334 (459)
T ss_dssp             EEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEE
T ss_pred             eecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccc
Confidence            111000  0001111110 12345689999999988765 58899999986321        111122222233344457


Q ss_pred             EEcCCCcEEEEecCCCcEEEEecCCC----------ceeeee-----eccCCCCceEEeCCCCcEEEEec
Q 036585          225 SFSPEGMFVISGSGDGSVHAWSVRSG----------KEVASW-----MSFDTEPPVIKWAPGSLMFVTGS  279 (304)
Q Consensus       225 ~~s~~~~~l~~~~~dg~i~v~d~~~~----------~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~  279 (304)
                      +|+..|+-..+---|..|.-|++...          ..+..+     .+|.....+-...|+|++|++..
T Consensus       335 ~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         335 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             ccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            89988865556678999999998532          233344     23432222233578999998876

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.55  E-value=5.5e-05  Score=58.47  Aligned_cols=223  Identities=9%  Similarity=0.098  Sum_probs=132.3

Q ss_pred             EEEeeCCCeEEEEecCCcceeeeeccc---------------------------------------cccee--EEEEcc-
Q 036585           30 LVTASDDESIRLYDVTAATCLKTINSK---------------------------------------KYGVD--LVCFTS-   67 (304)
Q Consensus        30 l~~~~~d~~i~vw~~~~~~~~~~~~~~---------------------------------------~~~v~--~~~~~~-   67 (304)
                      +.+|+..|.|+|+-+.+++.++.+.-.                                       .+..+  .+++.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            567889999999999888776654100                                       01112  344443 


Q ss_pred             --CCCeEEEEecCCCCCceEEEEccCceeeeeccc-ccccEEEEEEc--CCCCEEEEcccCC------------------
Q 036585           68 --HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKG-HHDRVVLLSLC--SSKDCFISGSLDR------------------  124 (304)
Q Consensus        68 --~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~dg------------------  124 (304)
                        ||+++++....  +..|.+.|+.+.+..+.+.- ....+..+...  |+..+++..+.+.                  
T Consensus        96 tyDGrylFVNDka--n~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          96 KYDGRFLFMNDKA--NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEEEETT--TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             ccceeEEEEEcCC--CceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence              78899888764  89999999999887554331 33455666654  4555777765522                  


Q ss_pred             eEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCC----------
Q 036585          125 TVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTME----------  194 (304)
Q Consensus       125 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------  194 (304)
                      .+..+|..+.+....+....                              ....+.++++|+++++.+.+          
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g------------------------------~ld~~~~s~dGK~af~TsyNSE~g~~l~e~  223 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSG------------------------------NLDNCDADYEGKWAFSTSYNSEKGMTLPEM  223 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESS------------------------------CCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred             EEEEEecCCceEEEEeeeCC------------------------------ChhccccCCCCCEEEEEeccccCCcchhhc
Confidence            25566777666655554432                              23345555555555554422          


Q ss_pred             ----------------------------CeEEEEEcCCC---ceeEEEEeCCCCCCcceEEEEcCCCcEEEEec-CCCcE
Q 036585          195 ----------------------------GHIHVLDSFRG---TLLSTYNVKPVSRNSTLEASFSPEGMFVISGS-GDGSV  242 (304)
Q Consensus       195 ----------------------------g~i~~~d~~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i  242 (304)
                                                  +.+.+.|.++.   ..+..+..    ......+.++|||+++++++ -+.++
T Consensus       224 ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV----pKsPHGV~vSPDGKyi~VaGKLs~tV  299 (459)
T d1fwxa2         224 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAPDKKHLCVAGKLSPTV  299 (459)
T ss_dssp             TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE----ESSCCCEEECTTSSEEEEECTTSSBE
T ss_pred             ccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec----CCCCCceEECCCCCEEEEeCCcCCcE
Confidence                                        12345554431   22223331    22344689999999987765 68899


Q ss_pred             EEEecCCCce--------eeee---eccCCCCceEEeCCCCcEEEEecCc--eEEeccC
Q 036585          243 HAWSVRSGKE--------VASW---MSFDTEPPVIKWAPGSLMFVTGSSE--LSFWIPD  288 (304)
Q Consensus       243 ~v~d~~~~~~--------~~~~---~~~~~~i~~~~~~~~~~~l~s~~~d--~~iw~~~  288 (304)
                      .|+|++....        ...+   ....-....-+|...|....|---|  +.-|+++
T Consensus       300 SViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         300 TVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             EEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            9999964211        1111   1122334566888888655555555  7778763

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.42  E-value=0.0002  Score=55.83  Aligned_cols=112  Identities=8%  Similarity=0.017  Sum_probs=72.5

Q ss_pred             ecccCcEEEEeeCCC-----------eEEEEecCCcceeee--e-cccccceeEEEEccCCCeEEEEecCCCCCceEEEE
Q 036585           23 SMEVGIYLVTASDDE-----------SIRLYDVTAATCLKT--I-NSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLS   88 (304)
Q Consensus        23 ~~~~~~~l~~~~~d~-----------~i~vw~~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd   88 (304)
                      ...+|+.++.|+.+.           .+.+||..+++-...  . ..+.......++.++++.++.++..  ...+.+||
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~--~~~~~~yd  104 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND--AKKTSLYD  104 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS--TTCEEEEE
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC--CcceeEec
Confidence            345789998888531           367899987654321  1 1222234466788999998888763  56899999


Q ss_pred             ccCceeeeecccc-cccEEEEEEcCCCCEEEEcccC------CeEEEEeCCccee
Q 036585           89 LHDNKYSRYFKGH-HDRVVLLSLCSSKDCFISGSLD------RTVLLWDQRAEKC  136 (304)
Q Consensus        89 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~  136 (304)
                      ..+.+....-... ...-..++..+|+++++.++.+      ..+.+||+.+.+-
T Consensus       105 ~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         105 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             CccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            9887643321111 1112346667799988888743      3588999887654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.39  E-value=0.00014  Score=53.20  Aligned_cols=223  Identities=10%  Similarity=0.133  Sum_probs=136.5

Q ss_pred             eeeEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCc-eeee
Q 036585           18 EEILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN-KYSR   96 (304)
Q Consensus        18 ~~~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~-~~~~   96 (304)
                      .+..-..|..+.||.-+ ..++.++|+++.+.+..+...+ +|.--.|-. .+.|+..+    +..|+-|+++.. ++.+
T Consensus        65 AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis-~~~L~lVT----~taVYHW~~~g~s~P~k  137 (327)
T d1utca2          65 ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS-LNTVALVT----DNAVYHWSMEGESQPVK  137 (327)
T ss_dssp             CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESS-SSEEEEEC----SSEEEEEESSSSCCCEE
T ss_pred             hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecC-CCEEEEEc----CCceEEEcccCCCCchh
Confidence            33444557778888777 4589999999988888777655 676667764 44566665    779999999543 4566


Q ss_pred             eccccc----ccEEEEEEcCCCCEEEEcc-------cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           97 YFKGHH----DRVVLLSLCSSKDCFISGS-------LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        97 ~~~~~~----~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                      .+..|.    ..|.....+++.++++..+       -.|.+.+|..+..... .+..+.....                 
T Consensus       138 ~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ-~ieGhaa~F~-----------------  199 (327)
T d1utca2         138 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFA-----------------  199 (327)
T ss_dssp             EEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-EECCSEEEEE-----------------
T ss_pred             hhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc-cccceeeeeE-----------------
Confidence            665554    4788888889999776543       2467888887755332 1111111111                 


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCc---e---eEEEE---eCCCCCCcceEEEEcCCCcEEEEe
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGT---L---LSTYN---VKPVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~---~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                      -+.+.+...+..-++|...      +...+++++.++....   .   .+...   .+.....-..++..|+.-..++.-
T Consensus       200 ~~~~~g~~~~~~lf~fa~r------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi  273 (327)
T d1utca2         200 QFKMEGNAEESTLFCFAVR------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  273 (327)
T ss_dssp             EECCTTCSSCEEEEEEEEE------ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred             EEEcCCCCCCceEEEEEEC------CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence            1111222223333333322      2234688888875421   1   11111   112223445568888888889999


Q ss_pred             cCCCcEEEEecCCCceeeeeeccCCCCceEEeCCC
Q 036585          237 SGDGSVHAWSVRSGKEVASWMSFDTEPPVIKWAPG  271 (304)
Q Consensus       237 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~  271 (304)
                      +.-|.|++||+.++.++..-+-...+|..-+-+.+
T Consensus       274 TK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~  308 (327)
T d1utca2         274 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA  308 (327)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred             ecCcEEEEEEcccccEEEEeecCCCceEEeccCCC
Confidence            99999999999999998776555555554443333

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=0.00052  Score=50.34  Aligned_cols=223  Identities=9%  Similarity=-0.030  Sum_probs=131.3

Q ss_pred             CcEEEEeeCCCeEEEEecCCcce-----eeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecccc
Q 036585           27 GIYLVTASDDESIRLYDVTAATC-----LKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGH  101 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~  101 (304)
                      |.+|+.+.. +.|+-.+++....     ...+..+...+..++|.+..+.++.....  ++.|+..++........+...
T Consensus         1 ~~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~--~~~I~~~~l~g~~~~~v~~~~   77 (263)
T d1npea_           1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS--EPSIGRASLHGGEPTTIIRQD   77 (263)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT--TTEEEEEESSSCCCEEEECTT
T ss_pred             CCEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECC--CCeEEEEEcccCCcEEEEEec
Confidence            345555544 4677777654321     12244445567889999888888877553  788988888766544444433


Q ss_pred             cccEEEEEEcCCCCEEE-EcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEE
Q 036585          102 HDRVVLLSLCSSKDCFI-SGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVK  180 (304)
Q Consensus       102 ~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  180 (304)
                      ...+..+++..-+..|+ +-...+.|.+.++..........                             ........++
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~-----------------------------~~l~~p~~l~  128 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-----------------------------TGLVNPRGIV  128 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----------------------------SSCSSEEEEE
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEec-----------------------------ccccCCcEEE
Confidence            35678888876555554 44556788888876543321111                             1224567889


Q ss_pred             EecCCcEEEEeeC---CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecCCCceeeee
Q 036585          181 FSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVRSGKEVASW  256 (304)
Q Consensus       181 ~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~  256 (304)
                      ++|...+++....   .+.|...++..... ..+..  ..-.....+++++.++.|+.+ ...+.|...|+........+
T Consensus       129 vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~--~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~  205 (263)
T d1npea_         129 TDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL  205 (263)
T ss_dssp             EETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE
T ss_pred             EecccCcEEEeecCCCCcEEEEecCCCCCc-eeeee--ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEE
Confidence            9987766665432   23455556643332 33331  233456789999888777666 45678999998654443333


Q ss_pred             eccCCCCceEEeCCCCcEEEEecCc-eEEecc
Q 036585          257 MSFDTEPPVIKWAPGSLMFVTGSSE-LSFWIP  287 (304)
Q Consensus       257 ~~~~~~i~~~~~~~~~~~l~s~~~d-~~iw~~  287 (304)
                      .+.. ...+|++.  +..|+....+ .+|+..
T Consensus       206 ~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~  234 (263)
T d1npea_         206 EGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAM  234 (263)
T ss_dssp             ECCC-SEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             CCCC-CcEEEEEE--CCEEEEEECCCCEEEEE
Confidence            3322 34577775  3445554433 444433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.07  E-value=0.00092  Score=54.90  Aligned_cols=79  Identities=18%  Similarity=0.150  Sum_probs=53.1

Q ss_pred             CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCC-CceEEeCCCCc
Q 036585          195 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTE-PPVIKWAPGSL  273 (304)
Q Consensus       195 g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~  273 (304)
                      |.|.-+|+.+++.+.++.......+.    ..+-.+.++++|+.||.++-+|.++|+.+-++...... -.-+.|..||+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g----~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGG----TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSB----CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcc----eeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence            57888999999998887743211111    12224667888999999999999999999887533221 12255666776


Q ss_pred             -EEEE
Q 036585          274 -MFVT  277 (304)
Q Consensus       274 -~l~s  277 (304)
                       |+++
T Consensus       520 qYi~v  524 (571)
T d2ad6a1         520 QYIGS  524 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             4433

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=0.00095  Score=48.86  Aligned_cols=214  Identities=9%  Similarity=-0.010  Sum_probs=127.9

Q ss_pred             EeecccCcEEEEe-eCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           21 LQSMEVGIYLVTA-SDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        21 i~~~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      +.+....+.|+-+ ..++.|+..++........+......+..+++..-+..|+.+...  .+.|.+.++........+.
T Consensus        41 ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~--~~~I~~~~~dg~~~~~l~~  118 (263)
T d1npea_          41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ--LDRIEVAKMDGTQRRVLFD  118 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEEC
T ss_pred             EEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccC--CCEEEEEecCCceEEEEec
Confidence            4445455555544 456778888887655544444434568899998777777766543  7899999987654333333


Q ss_pred             cccccEEEEEEcCCCCEEEEcccC---CeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCc
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLD---RTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDA  176 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  176 (304)
                      .....+..+++.|...+++.....   ..|.--++....... +.                            .......
T Consensus       119 ~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~-i~----------------------------~~~~~~P  169 (263)
T d1npea_         119 TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-LA----------------------------QDNLGLP  169 (263)
T ss_dssp             SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE-EE----------------------------CTTCSCE
T ss_pred             ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee-ee----------------------------eeccccc
Confidence            334567899999877666544321   223333443222111 11                            0122345


Q ss_pred             eEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecCCCceee
Q 036585          177 NVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVRSGKEVA  254 (304)
Q Consensus       177 ~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~  254 (304)
                      ..+++++.++.|+.+ ...+.|...|+........+.   .... ...+++.  +.+|+.. ...+.|...|..+++.+.
T Consensus       170 ~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~---~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~  243 (263)
T d1npea_         170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---GLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMD  243 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---CCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC---CCCC-cEEEEEE--CCEEEEEECCCCEEEEEECCCCccce
Confidence            789998877777655 467889999986554433333   2222 3467775  4455544 466789999998888766


Q ss_pred             eee-ccCCCCceEEeCCC
Q 036585          255 SWM-SFDTEPPVIKWAPG  271 (304)
Q Consensus       255 ~~~-~~~~~i~~~~~~~~  271 (304)
                      .+. .......+|+..++
T Consensus       244 ~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         244 TFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             EECCSSCCCCCCEEEECS
T ss_pred             EECCCCCCCcceEEEeCC
Confidence            553 33344556665543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.98  E-value=0.0028  Score=52.25  Aligned_cols=78  Identities=13%  Similarity=0.160  Sum_probs=52.7

Q ss_pred             CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCC-CceEEeCCCCc
Q 036585          195 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTE-PPVIKWAPGSL  273 (304)
Q Consensus       195 g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~  273 (304)
                      |.|.-||+.+++........    .+...-.++-.+.+++.|+.||.++.+|.++|+.+-++....+. -.=+.|..+|+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~----~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER----FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ceEEEEeCCCCceecccCCC----CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCE
Confidence            67889999999988877632    22222223346778888999999999999999999887533221 12244555775


Q ss_pred             -EEE
Q 036585          274 -MFV  276 (304)
Q Consensus       274 -~l~  276 (304)
                       |++
T Consensus       529 QYva  532 (596)
T d1w6sa_         529 QYVA  532 (596)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence             444

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.97  E-value=0.0012  Score=54.06  Aligned_cols=237  Identities=11%  Similarity=0.083  Sum_probs=128.1

Q ss_pred             CeEEEEecCCcceeeeeccc------------------------------ccc-eeEEEEccCCCeEEEEecC-------
Q 036585           37 ESIRLYDVTAATCLKTINSK------------------------------KYG-VDLVCFTSHPTTVIYSSKN-------   78 (304)
Q Consensus        37 ~~i~vw~~~~~~~~~~~~~~------------------------------~~~-v~~~~~~~~~~~l~~~~~~-------   78 (304)
                      |.|+-+|.++++.+-++..-                              ... =..+++.+....++.+..+       
T Consensus       178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~  257 (560)
T d1kv9a2         178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNRE  257 (560)
T ss_dssp             CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred             ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccc
Confidence            67999999999987665310                              001 1235666677766665432       


Q ss_pred             ---------CCCCceEEEEccCceeeeecccccccE---------EEEEEcCCC---CEEEEcccCCeEEEEeCCcceee
Q 036585           79 ---------GWDESLRLLSLHDNKYSRYFKGHHDRV---------VLLSLCSSK---DCFISGSLDRTVLLWDQRAEKCQ  137 (304)
Q Consensus        79 ---------~~d~~i~vwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~  137 (304)
                               .+...|.-.|+.+++....++.....+         .-+....++   ..++.++.+|.+.++|..+++.+
T Consensus       258 ~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         258 VRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             HHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence                     023456677888888765554322111         112222233   36777899999999999999877


Q ss_pred             ceEEEecccee-EecCCC-eEEEecC---CCeEEEEecCCC--CCceEEEEecCCcEEEEee------------------
Q 036585          138 GLLRVQGRPAA-AYDDQG-LVFGYEK---GPLDIFSVGGDI--SDANVVKFSNDGRLMLLTT------------------  192 (304)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~-~~~~~~~---~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~------------------  192 (304)
                      ........... ..+... .......   .....+......  ..-...+++|+...+++..                  
T Consensus       338 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~  417 (560)
T d1kv9a2         338 SAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRK  417 (560)
T ss_dssp             EEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCS
T ss_pred             ccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecccccccccc
Confidence            65443221110 011000 0000000   000000000000  0011334445444443322                  


Q ss_pred             ------------------CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceee
Q 036585          193 ------------------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVA  254 (304)
Q Consensus       193 ------------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~  254 (304)
                                        ..|.|.-+|+.+++.+..+....    +...-.++-.+.++++|+.||.++.+|.++|+.+-
T Consensus       418 ~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~----~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW  493 (560)
T d1kv9a2         418 AFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW  493 (560)
T ss_dssp             SCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC----CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeE
Confidence                              13578889999999998887432    22222233356688899999999999999999998


Q ss_pred             eeeccCCCC-ceEEeCCCCc-EEEE
Q 036585          255 SWMSFDTEP-PVIKWAPGSL-MFVT  277 (304)
Q Consensus       255 ~~~~~~~~i-~~~~~~~~~~-~l~s  277 (304)
                      ++....... .-+.+..+|+ |++.
T Consensus       494 ~~~l~~~~~~~P~ty~~dGkqyv~v  518 (560)
T d1kv9a2         494 QFEAQSGIVAAPMTFELAGRQYVAI  518 (560)
T ss_dssp             EEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EEECCCCccccCEEEEECCEEEEEE
Confidence            875432211 1245556775 4443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.94  E-value=0.0015  Score=53.62  Aligned_cols=75  Identities=12%  Similarity=0.136  Sum_probs=52.3

Q ss_pred             CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCCc-eEEeCCCCc
Q 036585          195 GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEPP-VIKWAPGSL  273 (304)
Q Consensus       195 g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~  273 (304)
                      |.+.-||+.+++.+.++.......+    -..+-.+.++++|+.||.++.+|.++|+.+-++....+... -+.|..+|+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~g----g~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNG----GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCC----CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCC----ceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            4688899999999988874322112    12334677888999999999999999999988754332211 144556776

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.92  E-value=0.0029  Score=49.96  Aligned_cols=244  Identities=11%  Similarity=-0.023  Sum_probs=121.3

Q ss_pred             EeecccCcEEEEe-eCCC----eEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecC-------------CCCC
Q 036585           21 LQSMEVGIYLVTA-SDDE----SIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKN-------------GWDE   82 (304)
Q Consensus        21 i~~~~~~~~l~~~-~~d~----~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------------~~d~   82 (304)
                      +..+|+++++|.+ +.+|    .++++|+.+++.+...-. ......++|.++++.|+.....             ....
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~  208 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ  208 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccCCcc
Confidence            5678999988844 3333    599999999987642211 1223578999999988876531             1123


Q ss_pred             ceEEEEccCcee--eeecccc--cccEEEEEEcCCCCEEEEcc---cCCe--EEEEeCCcceeeceEEEeccceeEecCC
Q 036585           83 SLRLLSLHDNKY--SRYFKGH--HDRVVLLSLCSSKDCFISGS---LDRT--VLLWDQRAEKCQGLLRVQGRPAAAYDDQ  153 (304)
Q Consensus        83 ~i~vwd~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~---~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~  153 (304)
                      .|..+.+.+...  ...+...  ...+..+..++++++++...   .+..  +.+.|+..........  ......    
T Consensus       209 ~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~----  282 (430)
T d1qfma1         209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI--LKWVKL----  282 (430)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS--CCCEEE----
T ss_pred             eEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccc--cceeEe----
Confidence            577777766532  2233322  23466777888998876432   2333  3444443321110000  000000    


Q ss_pred             CeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEee---CCCeEEEEEcCCCcee--EEEEeCCCCCCcceEEEEcC
Q 036585          154 GLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTT---MEGHIHVLDSFRGTLL--STYNVKPVSRNSTLEASFSP  228 (304)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~--~~~~~~~~~~~~i~~~~~s~  228 (304)
                                     +...... ....-+.++.+++...   .++.|...++......  ..+..  .+...+..-.++.
T Consensus       283 ---------------~~~~~~~-~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~--~~~~~~~~~~~~~  344 (430)
T d1qfma1         283 ---------------IDNFEGE-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP--EHEKDVLEWVACV  344 (430)
T ss_dssp             ---------------ECSSSSC-EEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEEC--CCSSCEEEEEEEE
T ss_pred             ---------------ecccccc-eEEEecCCceeecccCcccccceeEEecCCCCccccceEEec--ccCcceeeeEEEE
Confidence                           0000011 1111222233333322   2456666776544321  22221  2334444334444


Q ss_pred             CCcEEEEe-cCCC--cEEEEecCCCceeeeeeccCCCCceEEeCCCCcE-EEEe-cCc--eEEeccCC
Q 036585          229 EGMFVISG-SGDG--SVHAWSVRSGKEVASWMSFDTEPPVIKWAPGSLM-FVTG-SSE--LSFWIPDL  289 (304)
Q Consensus       229 ~~~~l~~~-~~dg--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~-~~d--~~iw~~~~  289 (304)
                      .+.+|+.. ..++  .|+++++.+++.........+.+..+...++... .++. |.-  -.+|.+++
T Consensus       345 ~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl  412 (430)
T d1qfma1         345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (430)
T ss_dssp             TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             ECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEEC
Confidence            45566544 3444  5899999887765544444455555555555433 3322 222  56665544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.76  E-value=0.0064  Score=49.77  Aligned_cols=71  Identities=10%  Similarity=0.097  Sum_probs=43.3

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeecccc----cceeEEEEccCCCeEEEEecC---CCCCceEEEEccCceeeeec
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKK----YGVDLVCFTSHPTTVIYSSKN---GWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~~---~~d~~i~vwd~~~~~~~~~~   98 (304)
                      +..++.++.|+.+.-.|.++++.+-......    ..++.--.-.+ ..++.+...   +.+|.|+-+|+.+|+.+..+
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence            3567778889999999999998875543211    11111111113 344444431   12678999999999877654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.0044  Score=45.30  Aligned_cols=212  Identities=8%  Similarity=-0.018  Sum_probs=120.3

Q ss_pred             EeecccCcEEEEe-eCCCeEEEEecCCcc----eeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           21 LQSMEVGIYLVTA-SDDESIRLYDVTAAT----CLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        21 i~~~~~~~~l~~~-~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      +.+.+..+.|.-+ ..++.|...++....    ....+......+..+++.+.+..|+.+...  .+.|.+.++......
T Consensus        35 id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~--~~~I~v~~~~g~~~~  112 (266)
T d1ijqa1          35 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVKRK  112 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEETTSSSEE
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC--CCEEEeEecCCceEE
Confidence            4444445555444 345556655554211    112222223456788998878877777653  788999999876554


Q ss_pred             eecccccccEEEEEEcCCCCEEEEcc--cCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCC
Q 036585           96 RYFKGHHDRVVLLSLCSSKDCFISGS--LDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDI  173 (304)
Q Consensus        96 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (304)
                      ..+.........+++.|...+++...  ..+.|.-.++..........                             ...
T Consensus       113 ~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~-----------------------------~~~  163 (266)
T d1ijqa1         113 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-----------------------------ENI  163 (266)
T ss_dssp             EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-----------------------------SSC
T ss_pred             EEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc-----------------------------ccc
Confidence            44544556678899998655555433  33455555554332211110                             122


Q ss_pred             CCceEEEEecCCcEEEEe-eCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecCCCc
Q 036585          174 SDANVVKFSNDGRLMLLT-TMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVRSGK  251 (304)
Q Consensus       174 ~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~  251 (304)
                      ...+.+++++.++.|+.+ ...+.|...++............ ........+++.  +.+|+.+ ..++.|+..+..+++
T Consensus       164 ~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~-~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-KRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT-TTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             ceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCC-CcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCc
Confidence            345789999877766665 55689999998654443333321 222344567765  3445544 466788888887777


Q ss_pred             eeeeeeccCCCCceE
Q 036585          252 EVASWMSFDTEPPVI  266 (304)
Q Consensus       252 ~~~~~~~~~~~i~~~  266 (304)
                      ....+......+..+
T Consensus       241 ~~~~~~~~~~~p~~i  255 (266)
T d1ijqa1         241 DVNLLAENLLSPEDM  255 (266)
T ss_dssp             CCEEEECSCSCCCCE
T ss_pred             ceEEEEcCCCCceEE
Confidence            666554443334433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=0.005  Score=45.00  Aligned_cols=220  Identities=11%  Similarity=-0.014  Sum_probs=124.5

Q ss_pred             EEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCce----eeeeccccccc
Q 036585           29 YLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNK----YSRYFKGHHDR  104 (304)
Q Consensus        29 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~  104 (304)
                      +|+.+... .|+..++.+.+....+. ....+..++|.+..+.++.....  .+.|.-.++....    ....+......
T Consensus         3 fLl~s~~~-~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~--~~~I~~~~l~~~~~~~~~~~~~~~~~~~   78 (266)
T d1ijqa1           3 YLFFTNRH-EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQA   78 (266)
T ss_dssp             EEEEECBS-SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSC
T ss_pred             EEEEECCC-eEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECC--CCEEEEEEecCCCCCcceEEEEeCCCCC
Confidence            34444433 58888988665444333 34467789999988888877542  6667766664321    11112222344


Q ss_pred             EEEEEEcCCCCEEEE-cccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEec
Q 036585          105 VVLLSLCSSKDCFIS-GSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSN  183 (304)
Q Consensus       105 v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  183 (304)
                      +..+++.+.+..|+. -...+.|.+.++..........                             ........++++|
T Consensus        79 p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~-----------------------------~~~~~P~~l~vd~  129 (266)
T d1ijqa1          79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-----------------------------ENGSKPRAIVVDP  129 (266)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-----------------------------CTTCCEEEEEEET
T ss_pred             cceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEc-----------------------------CCCCCcceEEEEc
Confidence            567788765554444 4456788888887554332221                             1224567788888


Q ss_pred             CCcEEEEee--CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe-cCCCcEEEEecCCCceeeeeecc-
Q 036585          184 DGRLMLLTT--MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-SGDGSVHAWSVRSGKEVASWMSF-  259 (304)
Q Consensus       184 ~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~-  259 (304)
                      ...+|....  ..+.|...++..... ..+..  ..-.....+++++.++.|+.+ ...+.|...++............ 
T Consensus       130 ~~g~ly~~~~~~~~~I~r~~~dGs~~-~~l~~--~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~  206 (266)
T d1ijqa1         130 VHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK  206 (266)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSCCE-EEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT
T ss_pred             ccCeEEEeccCCCcceeEeccCCCce-ecccc--cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCC
Confidence            665555543  345677777754433 33331  233556889999987777766 55678999898654432222222 


Q ss_pred             -CCCCceEEeCCCCcEEEEecCc-eEEec
Q 036585          260 -DTEPPVIKWAPGSLMFVTGSSE-LSFWI  286 (304)
Q Consensus       260 -~~~i~~~~~~~~~~~l~s~~~d-~~iw~  286 (304)
                       .....+|++..  ..|+.+... -+|+.
T Consensus       207 ~~~~p~~lav~~--~~ly~td~~~~~I~~  233 (266)
T d1ijqa1         207 RLAHPFSLAVFE--DKVFWTDIINEAIFS  233 (266)
T ss_dssp             TTSSEEEEEEET--TEEEEEETTTTEEEE
T ss_pred             cccccEEEEEEC--CEEEEEECCCCeEEE
Confidence             22345677653  344444333 34443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.62  E-value=0.012  Score=48.31  Aligned_cols=80  Identities=21%  Similarity=0.389  Sum_probs=55.9

Q ss_pred             CCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCCCceeeeeeccCCCC-ceEEeCCCC
Q 036585          194 EGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRSGKEVASWMSFDTEP-PVIKWAPGS  272 (304)
Q Consensus       194 dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i-~~~~~~~~~  272 (304)
                      .|.|.-+|+.+++.+..+....    +...-..+..+.++++|+.||.++.+|.++|+.+-+++...... .-+.|..+|
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~----p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G  540 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG  540 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             CCeEEEEcCCCCcEEeecCCCC----CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence            3678889999999998887432    22222234467788899999999999999999998885433221 225666788


Q ss_pred             c-EEEE
Q 036585          273 L-MFVT  277 (304)
Q Consensus       273 ~-~l~s  277 (304)
                      + |++.
T Consensus       541 ~qYv~i  546 (582)
T d1flga_         541 EQYLGV  546 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            5 4443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.58  E-value=0.013  Score=47.80  Aligned_cols=111  Identities=14%  Similarity=0.035  Sum_probs=66.9

Q ss_pred             CcEEEEeeCCCeEEEEecCCcceeeeeccccc----------ce-eEEEEccCCCeEEEEecCCCCCceEEEEccCceee
Q 036585           27 GIYLVTASDDESIRLYDVTAATCLKTINSKKY----------GV-DLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYS   95 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~   95 (304)
                      +..|+.++.++.|.-.|.++|+.+-++.....          .+ ..++.  .+..++.+..   ++.|.-.|..+++.+
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~---~g~l~Alda~tG~~~  140 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL---DGRLIALDAKTGKAI  140 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT---TSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeC---CCEEEEEECCCCcEE
Confidence            55667777888999999999998876532110          00 11111  2446777776   899999999999877


Q ss_pred             eecccccc-cEEEEEEcC--CCCEEEEcc------cCCeEEEEeCCcceeeceEEE
Q 036585           96 RYFKGHHD-RVVLLSLCS--SKDCFISGS------LDRTVLLWDQRAEKCQGLLRV  142 (304)
Q Consensus        96 ~~~~~~~~-~v~~~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~  142 (304)
                      ........ .-..+.-.|  ....++.+.      ..|.|.-+|.++++.+..+..
T Consensus       141 w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             eccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            66542211 000111111  122344432      247799999999998887653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.47  E-value=0.019  Score=47.12  Aligned_cols=71  Identities=8%  Similarity=0.076  Sum_probs=45.1

Q ss_pred             cEEEEeeCCCeEEEEecCCcceeeeeccccc-ceeEEEEcc--CCCeEEEEecC---CCCCceEEEEccCceeeeec
Q 036585           28 IYLVTASDDESIRLYDVTAATCLKTINSKKY-GVDLVCFTS--HPTTVIYSSKN---GWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        28 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~~~~~~---~~d~~i~vwd~~~~~~~~~~   98 (304)
                      .+++.++.|+.|.-.|.++++++..+..... .-..+.-+|  .+..++++...   +..|.|+-+|+.+|+.+-.+
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~  198 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence            4688889999999999999998877642110 000111111  24456665431   12588999999999887654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.45  E-value=0.013  Score=44.44  Aligned_cols=98  Identities=13%  Similarity=0.134  Sum_probs=55.1

Q ss_pred             CceEEEEecCCcEEEEee-----------------CCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe-
Q 036585          175 DANVVKFSNDGRLMLLTT-----------------MEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG-  236 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~-----------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-  236 (304)
                      ..+.+++..++.++++-.                 ..|.+..||  .++......    .-...+.++++||+++|+.+ 
T Consensus       151 ~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~--~~~~~~~~~----~l~~pNGI~~s~d~~~lyVa~  224 (340)
T d1v04a_         151 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS--PNDVRVVAE----GFDFANGINISPDGKYVYIAE  224 (340)
T ss_dssp             SEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC--SSCEEEEEE----EESSEEEEEECTTSSEEEEEE
T ss_pred             CccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc--CCceEEEcC----CCCccceeEECCCCCEEEEEe
Confidence            356677777776666521                 123344444  333322222    23567789999999887666 


Q ss_pred             cCCCcEEEEecCCCceeeee--eccCCCCceEEeCC-CCcEEEEe
Q 036585          237 SGDGSVHAWSVRSGKEVASW--MSFDTEPPVIKWAP-GSLMFVTG  278 (304)
Q Consensus       237 ~~dg~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~-~~~~l~s~  278 (304)
                      +..+.|++|++.....+...  ..-.+.+-.+.+.+ +|.+.+.+
T Consensus       225 t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         225 LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            46678999998754332221  12234455677765 44444443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.38  E-value=0.0075  Score=49.39  Aligned_cols=52  Identities=13%  Similarity=0.234  Sum_probs=37.8

Q ss_pred             ecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc-EEEE
Q 036585          182 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVIS  235 (304)
Q Consensus       182 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~  235 (304)
                      +-.+.++++|+.||.++.+|.++|+.+.++..........  +.|..+|+ |++.
T Consensus       485 stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~GkQYv~v  537 (573)
T d1kb0a2         485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGRQYVSV  537 (573)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEE
T ss_pred             EEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCEEEEEE
Confidence            3467788889999999999999999999998643333322  45556776 4443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.34  E-value=0.0082  Score=49.26  Aligned_cols=52  Identities=15%  Similarity=0.275  Sum_probs=38.7

Q ss_pred             ecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCc-EEEE
Q 036585          182 SNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGM-FVIS  235 (304)
Q Consensus       182 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~  235 (304)
                      +..+.++++|+.||.++-+|.++|+.+.++..........  +.|..+|+ |++.
T Consensus       494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~G~qYv~i  546 (582)
T d1flga_         494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDGEQYLGV  546 (582)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEE
T ss_pred             EEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCEEEEEE
Confidence            4467778889999999999999999999998643333322  56667885 5544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.24  E-value=0.019  Score=41.98  Aligned_cols=194  Identities=11%  Similarity=0.108  Sum_probs=114.4

Q ss_pred             CcEEEEeeCCCeEEEEecCCc-ceeeeecccc----cceeEEEEccCCCeEEEEec----CCCCCceEEEEccCceeeee
Q 036585           27 GIYLVTASDDESIRLYDVTAA-TCLKTINSKK----YGVDLVCFTSHPTTVIYSSK----NGWDESLRLLSLHDNKYSRY   97 (304)
Q Consensus        27 ~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~----~~~d~~i~vwd~~~~~~~~~   97 (304)
                      .+.|+..+. ..|.-|+++.. ++.+.+..|.    ..|..-..+++.++++..+-    ++-.|.+.+|..+.+. -+.
T Consensus       113 ~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~  190 (327)
T d1utca2         113 LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQP  190 (327)
T ss_dssp             SSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEE
T ss_pred             CCEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Ccc
Confidence            345555543 47999998542 4555555443    46777788889998776542    1235788899987653 456


Q ss_pred             cccccccEEEEEEcCCC---CEEEEc---ccCCeEEEEeCCccee-eceEEEeccceeEecCCCeEEEecCCCeEEEEec
Q 036585           98 FKGHHDRVVLLSLCSSK---DCFISG---SLDRTVLLWDQRAEKC-QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVG  170 (304)
Q Consensus        98 ~~~~~~~v~~~~~~~~~---~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (304)
                      +.+|.+....+.+..+.   +.++.+   ...+.+.+.++..... ...+.... ..+.+.|                 +
T Consensus       191 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~-vdi~fpp-----------------e  252 (327)
T d1utca2         191 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKA-VDVFFPP-----------------E  252 (327)
T ss_dssp             ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEE-EECCCCT-----------------T
T ss_pred             ccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCccee-EEEECCc-----------------c
Confidence            77777666555543221   123222   2235777777765321 11110000 0000111                 1


Q ss_pred             CCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEE
Q 036585          171 GDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVH  243 (304)
Q Consensus       171 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  243 (304)
                      ...+-.-++..++.-..+..-+.-|.|++||+.++.++..-+   .....|...+-+.+..-+++...+|.|.
T Consensus       253 a~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR---Is~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         253 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR---ISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee---cCCCceEEeccCCCCceEEEECCCCeEE
Confidence            122344568888888889999999999999999999998877   3555665445444444455555666554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.05  E-value=0.0093  Score=45.94  Aligned_cols=117  Identities=14%  Similarity=0.118  Sum_probs=74.4

Q ss_pred             CceEEEEecCCcEEEEeeCC-----C------eEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-CcE
Q 036585          175 DANVVKFSNDGRLMLLTTME-----G------HIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-GSV  242 (304)
Q Consensus       175 ~v~~~~~~~~~~~l~~~~~d-----g------~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i  242 (304)
                      .+.......+|+.++.|+.+     +      .+.+||..+++..........+.......++.+++++++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            33444455678888887742     1      37799999877654333222333344567888999999988755 579


Q ss_pred             EEEecCCCceeeeee-ccCCCCceEEeCCCCcEEEEecCc--------eEEeccCCcc
Q 036585          243 HAWSVRSGKEVASWM-SFDTEPPVIKWAPGSLMFVTGSSE--------LSFWIPDLSK  291 (304)
Q Consensus       243 ~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d--------~~iw~~~~~~  291 (304)
                      .+||..+..-...-. .....-...+..+||++++.++.+        +.+|+...++
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            999998754322111 112223467778899999988742        6777776543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.57  E-value=0.11  Score=40.53  Aligned_cols=62  Identities=6%  Similarity=0.048  Sum_probs=41.5

Q ss_pred             ceeEEEEccCCCeEEEEecC-C-CCCceEEEEccCceeeeecccccccEEEEEEcCCCCEEEEcc
Q 036585           59 GVDLVCFTSHPTTVIYSSKN-G-WDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCSSKDCFISGS  121 (304)
Q Consensus        59 ~v~~~~~~~~~~~l~~~~~~-~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  121 (304)
                      .+...+++|++++++.+-+. | ....++++|+.+++.+...-. ......+.|.++++.|+...
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~  189 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNA  189 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEE
Confidence            34567889999999876542 1 135799999999986542211 11225688999998776543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.085  Score=38.33  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=49.3

Q ss_pred             CCcEEEEeeCC-----CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCC-----CcEEEEecCCCcee
Q 036585          184 DGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGD-----GSVHAWSVRSGKEV  253 (304)
Q Consensus       184 ~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~v~d~~~~~~~  253 (304)
                      ++..++.|+.+     ..+..||..+.+....-..  .......+... .++..++.|+.+     .....+|..+.+..
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~  224 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM--NTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWT  224 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCC--SSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             eecceEecCcccccccceEEEeecccccccccccc--ccccccccccc-eeeeEEEecCccccccccceeeeeecceeee
Confidence            34455555443     3578888876654332211  11111222232 245566666543     34677887665432


Q ss_pred             eeeeccCCCC-ceEEeCCCCcEEEEecCc-------eEEeccCCcc
Q 036585          254 ASWMSFDTEP-PVIKWAPGSLMFVTGSSE-------LSFWIPDLSK  291 (304)
Q Consensus       254 ~~~~~~~~~i-~~~~~~~~~~~l~s~~~d-------~~iw~~~~~~  291 (304)
                      ..-....... .+++. .++++++.|+.+       +.+|+++.+.
T Consensus       225 ~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         225 FVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             ECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             cccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            2111111112 22332 367777777644       4566665543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.14  Score=39.03  Aligned_cols=179  Identities=14%  Similarity=0.081  Sum_probs=96.2

Q ss_pred             EeecccCcEEEEeeCCCeEEEEecCCc---------ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccC
Q 036585           21 LQSMEVGIYLVTASDDESIRLYDVTAA---------TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHD   91 (304)
Q Consensus        21 i~~~~~~~~l~~~~~d~~i~vw~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~   91 (304)
                      ++.+....+++.|+.++ ++|...+.-         ......+..-..|..++|+.+  .+++..    ++.+..++...
T Consensus        42 LAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~~----~~~l~~~~~~~  114 (381)
T d1xipa_          42 LDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVST----RNALYSLDLEE  114 (381)
T ss_dssp             EEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEEE----SSEEEEEESSS
T ss_pred             EEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEEe----CCCEEEEEeec
Confidence            44444455677777765 667664311         000111111125888999644  566654    66788887765


Q ss_pred             ceeeeecccccccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecC
Q 036585           92 NKYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGG  171 (304)
Q Consensus        92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (304)
                      -........-..++..+.++|.  .++....++.+.++++...+......  +.....+                     
T Consensus       115 l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~--~v~~~~~---------------------  169 (381)
T d1xipa_         115 LSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ--NVTSFDV---------------------  169 (381)
T ss_dssp             TTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE--SEEEEEE---------------------
T ss_pred             cccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC--CcceEEe---------------------
Confidence            4333333333456788888775  45556667889999988775432221  1111111                     


Q ss_pred             CCCCceEEEEecCCcEEEEeeCCCeEEEE-EcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEe
Q 036585          172 DISDANVVKFSNDGRLMLLTTMEGHIHVL-DSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISG  236 (304)
Q Consensus       172 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~-d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  236 (304)
                       .+.+.++.|++.|+.++++..++ ..+- ++....   .+.........+.++.|-.+..++++-
T Consensus       170 -~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         170 -TNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPS---ELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             -CSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCH---HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             -cCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCcc---ccCCCcCCCcceeEEEEecCceEEEEE
Confidence             14577788888888887764321 1111 111100   011111234567788888776666544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.25  E-value=0.18  Score=39.52  Aligned_cols=36  Identities=6%  Similarity=0.103  Sum_probs=28.6

Q ss_pred             ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeec
Q 036585          103 DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQG  138 (304)
Q Consensus       103 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  138 (304)
                      ...++|+|.|++++|++--..|.|++++..++....
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~   62 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT   62 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEee
Confidence            456799999999988876557999999887765543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.19  E-value=0.16  Score=38.25  Aligned_cols=202  Identities=12%  Similarity=0.142  Sum_probs=111.8

Q ss_pred             cCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEc------cCCCeEEEEecCC-CCCceEEEEccC-ceeeee
Q 036585           26 VGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFT------SHPTTVIYSSKNG-WDESLRLLSLHD-NKYSRY   97 (304)
Q Consensus        26 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~~~-~d~~i~vwd~~~-~~~~~~   97 (304)
                      ...+++....++-|.+||++ |+.++.+..  +.++.+..-      .....+++++... ...+|.+|.+.. ...+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            35567766777779999986 777777653  345544433      2233456665321 013577787753 222222


Q ss_pred             cccc-------cccEEEEEE--cCC-CC-EEEEcccCCeEEEEeCCcce---eeceEEEeccceeEecCCCeEEEecCCC
Q 036585           98 FKGH-------HDRVVLLSL--CSS-KD-CFISGSLDRTVLLWDQRAEK---CQGLLRVQGRPAAAYDDQGLVFGYEKGP  163 (304)
Q Consensus        98 ~~~~-------~~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (304)
                      +...       ...++.+++  ++. +. +++....+|.+..|.+....   ......                      
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lv----------------------  173 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKV----------------------  173 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEE----------------------
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEee----------------------
Confidence            2211       123566666  553 44 56667788999888764321   111110                      


Q ss_pred             eEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCC--CceeEEEEeC--CCCCCcceEEEEcC--CCc-EE-EE
Q 036585          164 LDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFR--GTLLSTYNVK--PVSRNSTLEASFSP--EGM-FV-IS  235 (304)
Q Consensus       164 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~~~~~~~~~--~~~~~~i~~~~~s~--~~~-~l-~~  235 (304)
                       +.+   .....+..+.+.+....|+++-.+.-|+.++..-  ......+...  ......+-.++.-.  ++. || ++
T Consensus       174 -r~f---~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivS  249 (353)
T d1h6la_         174 -RAF---KMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLAS  249 (353)
T ss_dssp             -EEE---ECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEE
T ss_pred             -ecc---CCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEE
Confidence             011   1224677899999988999998888777777542  1111211111  11244566666433  322 54 44


Q ss_pred             ecCCCcEEEEecCCC-ceeeee
Q 036585          236 GSGDGSVHAWSVRSG-KEVASW  256 (304)
Q Consensus       236 ~~~dg~i~v~d~~~~-~~~~~~  256 (304)
                      .-.+++..|||.... +.+..+
T Consensus       250 sQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         250 SQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             EGGGTEEEEEESSTTCCEEEEE
T ss_pred             cCCCCeEEEEecCCCccccceE
Confidence            446788999998763 555555

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.16  E-value=0.16  Score=38.12  Aligned_cols=96  Identities=7%  Similarity=-0.103  Sum_probs=56.5

Q ss_pred             CCCeEEEEEcCCCc--eeEEEEeCCCCCCcceEEEEcCCCcEEEEec--C-------------CCcEEEEecCCCceeee
Q 036585          193 MEGHIHVLDSFRGT--LLSTYNVKPVSRNSTLEASFSPEGMFVISGS--G-------------DGSVHAWSVRSGKEVAS  255 (304)
Q Consensus       193 ~dg~i~~~d~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~-------------dg~i~v~d~~~~~~~~~  255 (304)
                      ...+|.+|++....  ....-..........+.+++..++.+++|-.  .             -+.-.+|....++. ..
T Consensus       122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-~~  200 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RV  200 (340)
T ss_dssp             TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-EE
T ss_pred             CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-EE
Confidence            34578888875433  2222222223445678899999999888832  1             12334444433333 23


Q ss_pred             eeccCCCCceEEeCCCCcEEEEecCc---eEEeccCC
Q 036585          256 WMSFDTEPPVIKWAPGSLMFVTGSSE---LSFWIPDL  289 (304)
Q Consensus       256 ~~~~~~~i~~~~~~~~~~~l~s~~~d---~~iw~~~~  289 (304)
                      ....-...+.|+++||+++|+.+...   ++.|.++.
T Consensus       201 ~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         201 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence            22334567999999999888776655   66666654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.26  E-value=0.26  Score=33.87  Aligned_cols=225  Identities=13%  Similarity=0.153  Sum_probs=117.7

Q ss_pred             ecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEE-ccCCCeEEEEec---CCCCCceEEEEccCceeeeec
Q 036585           23 SMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCF-TSHPTTVIYSSK---NGWDESLRLLSLHDNKYSRYF   98 (304)
Q Consensus        23 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~---~~~d~~i~vwd~~~~~~~~~~   98 (304)
                      ...+.++++++...|.+.++-+..++.+..-+   .+|....- .+.-.++..+-.   +..-..|.+-++...-....+
T Consensus        22 kl~~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i   98 (313)
T d2hu7a1          22 VVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL   98 (313)
T ss_dssp             EETTTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEEC
T ss_pred             EecCCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEe
Confidence            34456688888889999999887766554322   23322111 111112222211   001233444444321112222


Q ss_pred             cccc-ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeE------------ecCCC-eEE--EecCC
Q 036585           99 KGHH-DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAA------------YDDQG-LVF--GYEKG  162 (304)
Q Consensus        99 ~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------------~~~~~-~~~--~~~~~  162 (304)
                      .... -.|.++++. +.+..++|+......+|-++.++.......+....+.            +.++. .++  ....+
T Consensus        99 ~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG  177 (313)
T d2hu7a1          99 EAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG  177 (313)
T ss_dssp             TTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTE
T ss_pred             cCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccC
Confidence            2222 456666664 4457777777777888888888766555444332211            11111 111  12244


Q ss_pred             CeEEEEecCCCCCceEEEEecCCcEEEEeeC---CCeEEEEEcCCCceeEEEEeCC-----CCCCcceEEEEcCCCcEEE
Q 036585          163 PLDIFSVGGDISDANVVKFSNDGRLMLLTTM---EGHIHVLDSFRGTLLSTYNVKP-----VSRNSTLEASFSPEGMFVI  234 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~  234 (304)
                      .+++++  ..++.++...+.+..+. +++-.   +....-+|+++++... ...+.     ...-.|+-+-+.|++++++
T Consensus       178 ~lri~t--pkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yer-ve~P~kd~~sy~p~~I~~~~Y~Pdd~L~i  253 (313)
T d2hu7a1         178 GLRVFD--SGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVED-LELPSKDFSSYRPTAITWLGYLPDGRLAV  253 (313)
T ss_dssp             EEEEEC--CSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEE-CCCSSCHHHHHCCSEEEEEEECTTSCEEE
T ss_pred             CEEEec--CCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceee-eecCcccceeecceEEEeeeeCCCCcEEE
Confidence            445443  44566777777777664 44322   2233356777665332 22110     0123455566999999989


Q ss_pred             EecCCCcEEEEecCCCceeeeee
Q 036585          235 SGSGDGSVHAWSVRSGKEVASWM  257 (304)
Q Consensus       235 ~~~~dg~i~v~d~~~~~~~~~~~  257 (304)
                      .+-.||.-++|.  +|+.+...+
T Consensus       254 iakrdG~s~lF~--nGk~in~p~  274 (313)
T d2hu7a1         254 VARREGRSAVFI--DGERVEAPQ  274 (313)
T ss_dssp             EEEETTEEEEEE--TTEEECCCS
T ss_pred             EEecCCchheee--cceEecCCC
Confidence            999999999986  566655443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.90  E-value=0.47  Score=37.08  Aligned_cols=57  Identities=18%  Similarity=0.379  Sum_probs=40.9

Q ss_pred             CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCceeEEEEeCC-----CCCCcceEEEEcCC
Q 036585          173 ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLLSTYNVKP-----VSRNSTLEASFSPE  229 (304)
Q Consensus       173 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-----~~~~~i~~~~~s~~  229 (304)
                      -....+|+|.|+|++|++--..|+|++++..+++.........     ........++|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4567789999999977766557999999988776554443221     12356778999994

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.90  E-value=0.51  Score=35.40  Aligned_cols=190  Identities=13%  Similarity=0.162  Sum_probs=101.6

Q ss_pred             CCCeEEEEecCCCCCceEEEEccCceeeeecccccccEEEEEEcC------CCCEEEEccc--C--CeEEEEeCCcce-e
Q 036585           68 HPTTVIYSSKNGWDESLRLLSLHDNKYSRYFKGHHDRVVLLSLCS------SKDCFISGSL--D--RTVLLWDQRAEK-C  136 (304)
Q Consensus        68 ~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~--d--g~i~iwd~~~~~-~  136 (304)
                      ....++....   ++-|++||+. |+.++.+.  .+.+..+....      ...-++.++.  +  -.|.+|.+.... .
T Consensus        39 ~~SlI~gTdK---~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~  112 (353)
T d1h6la_          39 QNSKLITTNK---KSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (353)
T ss_dssp             GGCEEEEEET---TSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE
T ss_pred             CccEEEEEcC---cCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc
Confidence            3444554444   6679999986 66666654  34555554432      2223444442  2  257777664221 1


Q ss_pred             eceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEE--ecC-Cc-EEEEeeCCCeEEEEEcC---CC----
Q 036585          137 QGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKF--SND-GR-LMLLTTMEGHIHVLDSF---RG----  205 (304)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~~~d~~---~~----  205 (304)
                      ...+.....+..                      .....+..+++  ++. |. ++++...+|.+..|.+.   .+    
T Consensus       113 l~~~~~~~~p~~----------------------~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~  170 (353)
T d1h6la_         113 LQSITDPNRPIA----------------------SAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISG  170 (353)
T ss_dssp             EEECSCSSSCEE----------------------CSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEE
T ss_pred             cccccccccccc----------------------cccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceee
Confidence            111110000000                      11123556666  554 43 45667778998888763   23    


Q ss_pred             ceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCCcEEEEecCC--C---ceeeeee--ccCCCCceEEeCC--CC-cEE
Q 036585          206 TLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVHAWSVRS--G---KEVASWM--SFDTEPPVIKWAP--GS-LMF  275 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~d~~~--~---~~~~~~~--~~~~~i~~~~~~~--~~-~~l  275 (304)
                      +.++.+.    ....+..|.+++....|+.+-++.-|..+++..  .   ..+....  .....+-.|+.-.  ++ .+|
T Consensus       171 ~lvr~f~----~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~Gyl  246 (353)
T d1h6la_         171 KKVRAFK----MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYL  246 (353)
T ss_dssp             EEEEEEE----CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEE
T ss_pred             EeeeccC----CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEE
Confidence            2334444    456788899999989999998877666666542  1   1122221  1345566676432  32 255


Q ss_pred             EEecCc---eEEeccCC
Q 036585          276 VTGSSE---LSFWIPDL  289 (304)
Q Consensus       276 ~s~~~d---~~iw~~~~  289 (304)
                      +.++..   ..||+-..
T Consensus       247 ivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         247 LASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEEGGGTEEEEEESST
T ss_pred             EEEcCCCCeEEEEecCC
Confidence            554433   77887644

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.69  E-value=0.62  Score=35.36  Aligned_cols=182  Identities=7%  Similarity=-0.031  Sum_probs=99.5

Q ss_pred             cceeEEEEccCCCeEEEEecCCCCCceEEEEccCc---------eeeeecccccccEEEEEEcCCCCEEEEcccCCeEEE
Q 036585           58 YGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDN---------KYSRYFKGHHDRVVLLSLCSSKDCFISGSLDRTVLL  128 (304)
Q Consensus        58 ~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  128 (304)
                      ....-++.++...++++++.   + .+.|.....-         ......+..-..|..++|+.+  .++.. .++.+..
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~---~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~  109 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASG---S-KAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYS  109 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEET---T-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEE
T ss_pred             cccceEEEeCCCCEEEEECC---C-EEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEE
Confidence            35667889888888888774   4 5667664321         000111111235888899744  45544 4456777


Q ss_pred             EeCCcceeeceEEEeccceeEecCCCeEEEecCCCeEEEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCcee
Q 036585          129 WDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTLL  208 (304)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  208 (304)
                      ++...-........                             -..++..+.++|.  .++....+|.+.++++..++..
T Consensus       110 ~~~~~l~~~~~~~~-----------------------------~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~  158 (381)
T d1xipa_         110 LDLEELSEFRTVTS-----------------------------FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK  158 (381)
T ss_dssp             EESSSTTCEEEEEE-----------------------------CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE
T ss_pred             EEeecccccccccc-----------------------------ccccccceecCCc--eeEEEecCCCEEEEEeccCccc
Confidence            77655332221111                             1124555666554  4666677889999999887644


Q ss_pred             EEEEe--CCCCCCcceEEEEcCCCcEEEEecCCCcEEEE-ecCCCceeeeeeccCCCCceEEeCCCCcEEEEe
Q 036585          209 STYNV--KPVSRNSTLEASFSPEGMFVISGSGDGSVHAW-SVRSGKEVASWMSFDTEPPVIKWAPGSLMFVTG  278 (304)
Q Consensus       209 ~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v~-d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  278 (304)
                      .....  .......+.+++|++.|..++++..++ ..+- ++.....+.........+.+|.|-.+..++++-
T Consensus       159 ~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         159 QLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cccCCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            32210  001235677888888888887774332 1111 221111111111233457788898777777654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=1.3  Score=31.56  Aligned_cols=65  Identities=14%  Similarity=0.140  Sum_probs=34.8

Q ss_pred             CCcEEEEeeCC-----CeEEEEEcCCCceeEEEEeCCCCCCcceEEEEcCCCcEEEEecCCC-----cEEEEecCCCc
Q 036585          184 DGRLMLLTTME-----GHIHVLDSFRGTLLSTYNVKPVSRNSTLEASFSPEGMFVISGSGDG-----SVHAWSVRSGK  251 (304)
Q Consensus       184 ~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~v~d~~~~~  251 (304)
                      +++.++.++.+     .....+|..+.+....-. .+...... +++. .++++++.|+.++     .|.+||+.+.+
T Consensus       195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~r~~~-~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP-MKHRRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC-CSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             eeeEEEecCccccccccceeeeeecceeeecccC-ccCcccce-EEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            45555555443     356778877665433221 11111112 2332 3678888876544     37889987653

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.50  E-value=1.9  Score=31.78  Aligned_cols=198  Identities=9%  Similarity=0.071  Sum_probs=107.6

Q ss_pred             cccCcEEEEeeCCCeEEEEecCCc----ceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEc---cC-----
Q 036585           24 MEVGIYLVTASDDESIRLYDVTAA----TCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSL---HD-----   91 (304)
Q Consensus        24 ~~~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~---~~-----   91 (304)
                      .++.+.+++-+.+|.|+--.+.+.    ..-..++.. +.+..+........|+.-+.   .|.++...+   ..     
T Consensus         2 I~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~~-D~v~~~~~~~t~d~ll~fT~---~Grvy~l~v~eiP~~~~~s   77 (323)
T d1wp5a_           2 VASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTN---KGNYLYCPVHELPDIRWKD   77 (323)
T ss_dssp             CSCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEET---TSEEEEEEGGGSCBCCTTS
T ss_pred             CCCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccCC-ceEEEEEEEcCCCEEEEEec---CCEEEEEeeccCccccccc
Confidence            356778899999999986654321    111112222 34555444444555555555   776655443   32     


Q ss_pred             -ceeeeecc--cccccEEEE-EEcC--CCCEEEEcccCCeEEEEeCCcceeeceEEEeccceeEecCCCeEEEecCCCeE
Q 036585           92 -NKYSRYFK--GHHDRVVLL-SLCS--SKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFGYEKGPLD  165 (304)
Q Consensus        92 -~~~~~~~~--~~~~~v~~~-~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
                       |.++..+-  .....+..+ ...+  ...+|+..+..|.++..++........-  .+                   +.
T Consensus        78 ~G~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~--~g-------------------~~  136 (323)
T d1wp5a_          78 LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYS--KP-------------------LT  136 (323)
T ss_dssp             CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCS--SC-------------------EE
T ss_pred             ccccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhcc--ch-------------------hh
Confidence             33333322  123344433 3332  3568888899999999887654321100  00                   00


Q ss_pred             EEEecCCCCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce-------eEEEEeCCCCCCcceE-EEEcCCCcEEEEec
Q 036585          166 IFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL-------LSTYNVKPVSRNSTLE-ASFSPEGMFVISGS  237 (304)
Q Consensus       166 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~  237 (304)
                      ...+ .....+..+....+...++..+..|.+..|+...-..       +.-+..  .....+.+ ....+++..|+..+
T Consensus       137 ~i~L-~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL--~~~D~vv~~~~~~~~~~~ll~~T  213 (323)
T d1wp5a_         137 GINL-KNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNL--KEGDYIVSGQLITSKDESIVVAT  213 (323)
T ss_dssp             CSCC-CTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCC--CTTCCEEEEEEECCTTCEEEEEE
T ss_pred             hccc-cccccccceeccCCCeEEEEEEecceeeEeecccccccCccccccccccc--ccccccchhhhccccccceeeee
Confidence            0001 1223455566666677788899999999998653221       111221  12334443 34556677888888


Q ss_pred             CCCcEEEEecCC
Q 036585          238 GDGSVHAWSVRS  249 (304)
Q Consensus       238 ~dg~i~v~d~~~  249 (304)
                      ..|..+.-.+..
T Consensus       214 ~~G~gKr~~~~e  225 (323)
T d1wp5a_         214 QRGAVKKMKLTE  225 (323)
T ss_dssp             TTSEEEEEEGGG
T ss_pred             eeheeecccchh
Confidence            889888766543

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=88.46  E-value=3.1  Score=29.57  Aligned_cols=103  Identities=10%  Similarity=0.012  Sum_probs=46.7

Q ss_pred             eEeecccCcEEEEeeCCCeEEEEecCCcceeeeecccccceeEEEEccCCCeEEEEecCCCCCceEEEEccCceeeeecc
Q 036585           20 ILQSMEVGIYLVTASDDESIRLYDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYSRYFK   99 (304)
Q Consensus        20 ~i~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~d~~i~vwd~~~~~~~~~~~   99 (304)
                      +........+.+.-. ||.|..|-.....++-.-......+..++.  ...+.+. -.   |+.+..|.....-......
T Consensus        28 i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~--G~~~~~a-l~---dg~v~~wG~~~~gq~~~~~  100 (273)
T d1jtdb_          28 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAA--GNYHSLA-LK---DGEVIAWGGNEDGQTTVPA  100 (273)
T ss_dssp             EEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEE--CSSEEEE-EE---TTEEEEEECCTTSTTCCCG
T ss_pred             cEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEec--CCCceee-ee---eeeeeccCCCcceeecccc
Confidence            333333334444334 899999976543322221222334555543  2222222 34   8888888764322111111


Q ss_pred             cccccEEEEEEcCCCCEEEEcccCCeEEEEeCC
Q 036585          100 GHHDRVVLLSLCSSKDCFISGSLDRTVLLWDQR  132 (304)
Q Consensus       100 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  132 (304)
                      .....+..+.....  ..+. -.|+.+..|.-.
T Consensus       101 ~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~  130 (273)
T d1jtdb_         101 EARSGVDAIAAGAW--ASYA-LKDGKVIAWGDD  130 (273)
T ss_dssp             GGGSSCCEEEEETT--EEEE-EETTEEEEEECC
T ss_pred             ccccceeEEeeecc--cccc-cccccceecccC
Confidence            11223333433222  2222 247888888643

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=86.43  E-value=3.3  Score=27.74  Aligned_cols=126  Identities=10%  Similarity=0.075  Sum_probs=72.6

Q ss_pred             ccEEEEEEcCCCCEEEEcccCCeEEEEeCCcceeeceE----EE-----eccceeEecCCCeEEEecCCCeEEEEecCC-
Q 036585          103 DRVVLLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLL----RV-----QGRPAAAYDDQGLVFGYEKGPLDIFSVGGD-  172 (304)
Q Consensus       103 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  172 (304)
                      ..+.-+.|+|++.+.++-.  +.++.=.+.+.....-+    +.     ..-..+.++|.+.++.-..+  .++.-... 
T Consensus        40 ~n~~~i~fsP~G~LyaVr~--~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt~~--~LYr~~pPt  115 (235)
T d1tl2a_          40 SNFKFLFLSPGGELYGVLN--DKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSKD--KLYKASPPQ  115 (235)
T ss_dssp             TTCSEEEECTTSCEEEEET--TEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEETT--EEEEESCCC
T ss_pred             cceeEEEECCCCcEEEEEC--CeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEecCc--ceecCCcCc
Confidence            3566799999998766643  34444333332221111    11     12235778999988877765  44433221 


Q ss_pred             -----------------CCCceEEEEecCCcEEEEeeCCCeEEEEEcCCCce------eEEEEeCCCCCCcceEEEEcCC
Q 036585          173 -----------------ISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL------LSTYNVKPVSRNSTLEASFSPE  229 (304)
Q Consensus       173 -----------------~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~------~~~~~~~~~~~~~i~~~~~s~~  229 (304)
                                       -..+..+-|.|+|.+-++ ..+ .++-+....+..      ...+.  ..+-....-+.|+|+
T Consensus       116 n~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV-~~~-~l~k~~pP~~~~d~WL~~st~ig--r~~w~~~~fi~Fs~d  191 (235)
T d1tl2a_         116 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV-HGQ-QFYKALPPVSNQDNWLARATKIG--QGGWDTFKFLFFSSV  191 (235)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE-ETT-EEEEECCCSSTTCCHHHHCEEEE--SSSGGGEEEEEECTT
T ss_pred             ccchhhhhhhhhhccCCcCceeEEEECCCceEEEE-ECC-cEEEcCCCCCCCchhhhhhhhhc--cCcccCceEEEECCC
Confidence                             134567889999987766 333 466665433221      11222  145556678999999


Q ss_pred             CcEEEEe
Q 036585          230 GMFVISG  236 (304)
Q Consensus       230 ~~~l~~~  236 (304)
                      |++..+-
T Consensus       192 G~L~~v~  198 (235)
T d1tl2a_         192 GTLFGVQ  198 (235)
T ss_dssp             SCEEEEE
T ss_pred             CcEEEEe
Confidence            9877663