Citrus Sinensis ID: 036593
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 574 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGP4 | 1010 | Probable LRR receptor-lik | yes | no | 0.939 | 0.533 | 0.406 | 8e-98 | |
| C0LGT6 | 1031 | LRR receptor-like serine/ | no | no | 0.940 | 0.523 | 0.393 | 2e-95 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.942 | 0.527 | 0.396 | 2e-84 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.893 | 0.409 | 0.383 | 9e-83 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.893 | 0.410 | 0.381 | 6e-79 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.912 | 0.446 | 0.365 | 3e-76 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.911 | 0.474 | 0.366 | 6e-76 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.902 | 0.453 | 0.378 | 1e-75 | |
| Q8VZG8 | 1045 | Probable LRR receptor-lik | no | no | 0.902 | 0.495 | 0.347 | 3e-75 | |
| P93194 | 1109 | Receptor-like protein kin | N/A | no | 0.914 | 0.473 | 0.349 | 8e-74 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function desciption |
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Score = 358 bits (918), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 223/549 (40%), Positives = 331/549 (60%), Gaps = 10/549 (1%)
Query: 32 WVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGR 91
W G++C +++RV L L + LGG I P +GNLSFL+SLD+ N F G +P E+G+L R
Sbjct: 56 WKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSR 115
Query: 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVID 151
L+++ N L G IP + S+L + L +N + G +P+ L +L+ L L N +
Sbjct: 116 LEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMR 175
Query: 152 GNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIST 211
G +P+ +GNL+ L L L HNNL+ +IP+++ L + SL L NN SG+ PPA++N+S+
Sbjct: 176 GKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSS 235
Query: 212 IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSF 271
+++L + N FSGRL +G LPN+ + N G+IP +L+N S L L + N+
Sbjct: 236 LKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNL 295
Query: 272 SGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGIL 331
+G IP TFGN+ +L +L + TN+L ++SS FL+SLTNC +L L + N LGG L
Sbjct: 296 TGSIP-TFGNVPNLKLLFLHTNSLGSDSSR--DLEFLTSLTNCTQLETLGIGRNRLGGDL 352
Query: 332 PPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQ 391
P I N SA L + + GSIP +IGNL L L LD N L+G +PTS+G L L+
Sbjct: 353 PISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLR 412
Query: 392 GLSLEDNNLEGSIPYDLCH------LELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS 445
LSL N L G IP + + L+L+ N G +P L + + L EL +G NKL +
Sbjct: 413 YLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGT 472
Query: 446 IPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLE 505
IP + ++ +L +++S NSL SLP ++ L+ L L L N+LSG +P T+G + +E
Sbjct: 473 IPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTME 532
Query: 506 TLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGE 565
+L L N F G IP+ G L+ ++ +DLS N+ SG IP+ + S L+ N+S N LEG+
Sbjct: 533 SLFLEGNLFYGDIPDLKG-LVGVKEVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGK 591
Query: 566 IPVKGSFKN 574
+PVKG F+N
Sbjct: 592 VPVKGIFEN 600
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function description |
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Score = 350 bits (898), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 216/549 (39%), Positives = 319/549 (58%), Gaps = 9/549 (1%)
Query: 32 WVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGR 91
W+G++C R +RV +LNL G L G I P +GNLSFL L++ N+F +P ++G+L R
Sbjct: 63 WIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFR 122
Query: 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVID 151
L++++ S+N L G IP+ + S+L + L +N++ +P+ L +LSKL +L S N +
Sbjct: 123 LQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLT 182
Query: 152 GNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIST 211
GN P+ +GNL++L LD +N ++ +IP E+ L + + N+ SG PPA++NIS+
Sbjct: 183 GNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISS 242
Query: 212 IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSF 271
+ L+L N FSG L + G+ LPN+ L L N G IP +L N S L D+ SN
Sbjct: 243 LESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYL 302
Query: 272 SGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGIL 331
SG IP +FG LR+L L IR N+L SSS + F+ ++ NC +L YL + N LGG L
Sbjct: 303 SGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLE--FIGAVANCTQLEYLDVGYNRLGGEL 360
Query: 332 PPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQ 391
P I N S +L S + + + G+IP +IGNL L L+L+ N L+G +P S G L LQ
Sbjct: 361 PASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQ 420
Query: 392 GLSLEDNNLEGSIP------YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS 445
+ L N + G IP L L LN N G IP L L +L + +N+L +
Sbjct: 421 VVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGT 480
Query: 446 IPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLE 505
IP + + + I+LS+N L P V KL++L L S N+LSG +P IG + +E
Sbjct: 481 IPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSME 540
Query: 506 TLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGE 565
L + N F G IP+ + L+SL+++D S NN SG+IP+ L +L L+ N+S N EG
Sbjct: 541 FLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGR 599
Query: 566 IPVKGSFKN 574
+P G F+N
Sbjct: 600 VPTTGVFRN 608
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
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Score = 313 bits (803), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 218/550 (39%), Positives = 312/550 (56%), Gaps = 9/550 (1%)
Query: 31 SWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLG 90
SW G+ C +H+RV ++L G+ L G + P +GNLSFL SL++ N F+G +P+E+G L
Sbjct: 70 SWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLF 129
Query: 91 RLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVI 150
RL++++ S N G IP + S L + L +N++ +P +LSKL +L N +
Sbjct: 130 RLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNL 189
Query: 151 DGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIS 210
G P+ +GNL++L LD +N ++ +IP +I L+ + + N +G+ PP I+N+S
Sbjct: 190 TGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLS 249
Query: 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270
++ L++ N FSG L G LPN++ L + IN+ GTIP++L+N S L LD+ SN
Sbjct: 250 SLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNH 309
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
+G IP +FG R N+L + NN + + S+ FL +LTNC +L YL + N LGG
Sbjct: 310 LTGKIPLSFG--RLQNLLLLGLNNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQ 367
Query: 331 LPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390
LP I N S L + GSIP IGNL L L L N L G +P S+G L +L
Sbjct: 368 LPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSEL 427
Query: 391 QGLSLEDNNLEGSIPYD------LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS 444
+ + L N L G IP L +L L N G IP L S + L +L LG+NKL
Sbjct: 428 RKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNG 487
Query: 445 SIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDL 504
SIP L L ++ +N+S N L L ++ KLK L LD+S N+LSG IP T+ + L
Sbjct: 488 SIPHELMELPSLVVLNVSFNLLVGPLRQDIGKLKFLLALDVSYNKLSGQIPQTLANCLSL 547
Query: 505 ETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564
E L L N F GPIP+ G L L LDLS NN SG IP+ + S L+ N+S N +G
Sbjct: 548 EFLLLQGNSFVGPIPDIRG-LTGLRFLDLSKNNLSGTIPEYMANFSKLQNLNLSLNNFDG 606
Query: 565 EIPVKGSFKN 574
+P +G F+N
Sbjct: 607 AVPTEGVFRN 616
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
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Score = 308 bits (788), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 213/556 (38%), Positives = 300/556 (53%), Gaps = 43/556 (7%)
Query: 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS 103
++ LNL G L G IP L L+ L +LD++ NN G + E ++ +L+F+ + N+LS
Sbjct: 266 IQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLS 325
Query: 104 GS-------------------------IPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLS 138
GS IP I L+++ L NN +TG IP+SLF L
Sbjct: 326 GSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLV 385
Query: 139 KLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNL 198
+L L + N ++G + S I NL+NL + L HNNL+ ++P EIG L LE + L N
Sbjct: 386 ELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRF 445
Query: 199 SGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNA 258
SG +P I N + ++ ++ + N+ SG +PS+IG L ++ L L N L+G IP SL N
Sbjct: 446 SGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGR-LKDLTRLHLRENELVGNIPASLGNC 504
Query: 259 SKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLS 318
++ +DL N SG IP++FG L L + I N+L Q + SL N + L+
Sbjct: 505 HQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSL--------QGNLPDSLINLKNLT 556
Query: 319 YLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNG 378
+ SN G + PL G S+S SF E G IP E+G L L L N G
Sbjct: 557 RINFSSNKFNGSISPLCG--SSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTG 614
Query: 379 TIPTSVGTLQQLQGLSLEDNNLEGSIPYDL--C----HLELNGNKLSGHIPPCLASLTSL 432
IP + G + +L L + N+L G IP +L C H++LN N LSG IP L L L
Sbjct: 615 RIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLL 674
Query: 433 RELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSG 492
EL+L SNK S+P+ ++SL IL + L NSLN S+P + L+ L L+L NQLSG
Sbjct: 675 GELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSG 734
Query: 493 NIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLES-LDLSGNNFSGKIPKSLEALSH 551
+PSTIG L L L L+ N G IP +G L L+S LDLS NNF+G+IP ++ L
Sbjct: 735 PLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPK 794
Query: 552 LKQFNVSQNMLEGEIP 567
L+ ++S N L GE+P
Sbjct: 795 LESLDLSHNQLVGEVP 810
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Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 203/532 (38%), Positives = 292/532 (54%), Gaps = 19/532 (3%)
Query: 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNEL-GKLGRLKFISFSFNKL 102
++ L+LS L G IP N+S L+ L + N+ G LP + L+ + S +L
Sbjct: 289 LQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQL 348
Query: 103 SGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLS 162
SG IP + L+ + L NN++ G IP +LF L +L L N ++G + I NL+
Sbjct: 349 SGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLT 408
Query: 163 NLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222
NL L L HNNL+ ++P EI L+ LE L L N SG IP I N ++++++++ N F
Sbjct: 409 NLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHF 468
Query: 223 SGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL 282
G +P +IG L + L L N L+G +P SL N +L LDL N SG IP++FG L
Sbjct: 469 EGEIPPSIGR-LKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFL 527
Query: 283 RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASL 342
+ L L + N+L Q + SL + R L+ + L N L G + PL G S+S
Sbjct: 528 KGLEQLMLYNNSL--------QGNLPDSLISLRNLTRINLSHNRLNGTIHPLCG--SSSY 577
Query: 343 QSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG 402
SF IP E+GN + L L L N L G IP ++G +++L L + N L G
Sbjct: 578 LSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTG 637
Query: 403 SIPYDLC------HLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYI 456
+IP L H++LN N LSG IPP L L+ L EL+L SN+ S+P+ L++ +
Sbjct: 638 TIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKL 697
Query: 457 LEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG 516
L ++L NSLN S+P + L L VL+L +NQ SG++P +G L L L L+ N G
Sbjct: 698 LVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTG 757
Query: 517 PIPESVGSLISLES-LDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIP 567
IP +G L L+S LDLS NNF+G IP ++ LS L+ ++S N L GE+P
Sbjct: 758 EIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVP 809
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 207/566 (36%), Positives = 294/566 (51%), Gaps = 42/566 (7%)
Query: 32 WVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGR 91
W GI+CDS V +++L L G + P + NL++L LD+T N+F G +P E+GKL
Sbjct: 63 WTGITCDSTGHVV-SVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTE 121
Query: 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNN------------------------NIT 127
L + N SGSIP+ I L + + LRNN N+T
Sbjct: 122 LNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLT 181
Query: 128 GPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQN 187
G IP L +L L+M A+ N + G+IP IG L+NL DLDL N L +IP + GNL N
Sbjct: 182 GKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLN 241
Query: 188 LESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL 247
L+SL L N L G IP I N S++ L L+ NQ +G++P+ +G+ L ++ L + N L
Sbjct: 242 LQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGN-LVQLQALRIYKNKL 300
Query: 248 IGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSF 307
+IP SL ++L L L N G I G L L VL++ +NN T E F
Sbjct: 301 TSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGE--------F 352
Query: 308 LSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLI 367
S+TN R L+ L + N + G LP +G +L++ A++ L G IP I N GL
Sbjct: 353 PQSITNLRNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSISNCTGLK 411
Query: 368 LLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDL--CH----LELNGNKLSGH 421
LL L N + G IP G + L +S+ N+ G IP D+ C L + N L+G
Sbjct: 412 LLDLSHNQMTGEIPRGFGRM-NLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGT 470
Query: 422 IPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLR 481
+ P + L LR L++ N LT IP + +L+ + + L SN +P + L +L+
Sbjct: 471 LKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQ 530
Query: 482 VLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGK 541
L + N L G IP + + L L L++N+F G IP L SL L L GN F+G
Sbjct: 531 GLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGS 590
Query: 542 IPKSLEALSHLKQFNVSQNMLEGEIP 567
IP SL++LS L F++S N+L G IP
Sbjct: 591 IPASLKSLSLLNTFDISDNLLTGTIP 616
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (729), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 201/548 (36%), Positives = 289/548 (52%), Gaps = 25/548 (4%)
Query: 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKL 102
+K L+LS GL G IP +GN S L L + N F G +P E+GKL L+ + N++
Sbjct: 98 HLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRI 157
Query: 103 SGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLS 162
SGS+P IG L L + +NNI+G +P S+ NL +L +A N+I G++PS IG
Sbjct: 158 SGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCE 217
Query: 163 NLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222
+L L L N L ++P EIG L+ L + L N SG IP I N +++ L L+ NQ
Sbjct: 218 SLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQL 277
Query: 223 SGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL 282
G +P +G L ++E+L L N L GTIP + N S I +D N+ +G IP GN+
Sbjct: 278 VGPIPKELG-DLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNI 336
Query: 283 RHLNVLSIRTNNLT----TESSSADQWSFLSSLTNC------------RKLSYLVLDSNP 326
L +L + N LT E S+ S L N R L L L N
Sbjct: 337 EGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNS 396
Query: 327 LGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGT 386
L G +PP +G +S L + L G IP + +I+L L N+L+G IPT + T
Sbjct: 397 LSGTIPPKLGWYS-DLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITT 455
Query: 387 LQQLQGLSLEDNNLEGSIPYDLCH------LELNGNKLSGHIPPCLASLTSLRELRLGSN 440
+ L L L NNL G P +LC +EL N+ G IP + + ++L+ L+L N
Sbjct: 456 CKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADN 515
Query: 441 KLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA 500
T +P + L + +N+SSN L +PS + K+L+ LD+ N SG +PS +G+
Sbjct: 516 GFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGS 575
Query: 501 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLK-QFNVSQ 559
L LE L L++N G IP ++G+L L L + GN F+G IP+ L +L+ L+ N+S
Sbjct: 576 LYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSY 635
Query: 560 NMLEGEIP 567
N L GEIP
Sbjct: 636 NKLTGEIP 643
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 203/536 (37%), Positives = 293/536 (54%), Gaps = 18/536 (3%)
Query: 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK 101
+ ++ L +SG L GT+P LG+ L LD++ N G +P L KL L+ + + N+
Sbjct: 105 RSLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQ 164
Query: 102 LSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNV-IDGNIPSGIGN 160
L+G IP I SKL+ + L +N +TG IP L LS LE+++ N I G IPS IG+
Sbjct: 165 LTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGD 224
Query: 161 LSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSN 220
SNL L L ++ +P+ +G L+ LE+L++ T +SG IP + N S + L L+ N
Sbjct: 225 CSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYEN 284
Query: 221 QFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFG 280
SG +P IG L +E L L N+L+G IP+ + N S L +DL N SG IP++ G
Sbjct: 285 SLSGSIPREIGQ-LTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIG 343
Query: 281 NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSA 340
L L I N + S ++++NC L L LD N + G++P +G +
Sbjct: 344 RLSFLEEFMISDNKFSG--------SIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTK 395
Query: 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNL 400
L F+A+ +L GSIP + + L L L N L GTIP+ + L+ L L L N+L
Sbjct: 396 -LTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSL 454
Query: 401 EGSIPYD------LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLE 454
G IP + L L L N+++G IP + SL + L SN+L +P + S
Sbjct: 455 SGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCS 514
Query: 455 YILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQF 514
+ I+LS+NSL SLP+ V L L+VLD+S NQ SG IP+++G LV L L L+ N F
Sbjct: 515 ELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLF 574
Query: 515 QGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLK-QFNVSQNMLEGEIPVK 569
G IP S+G L+ LDL N SG+IP L + +L+ N+S N L G+IP K
Sbjct: 575 SGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSK 630
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 283 bits (723), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 194/558 (34%), Positives = 293/558 (52%), Gaps = 40/558 (7%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106
++LS GTI P G S L D+++N G +P ELG L L + NKL+GSI
Sbjct: 123 VDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSI 182
Query: 107 PTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFD 166
P+ IG L+K+ +++ +N +TGPIP+S NL+KL L N + G+IPS IGNL NL +
Sbjct: 183 PSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRE 242
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRL 226
L L NNL +IP+ GNL+N+ L + N LSG IPP I N++ + L+LH+N+ +G +
Sbjct: 243 LCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPI 302
Query: 227 PSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLN 286
PST+G+ + + L L +N L G+IP L +I L++ N +G +P++FG L L
Sbjct: 303 PSTLGN-IKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALE 361
Query: 287 VLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFY 346
L +R N L+ + N +L+ L LD+N G LP I L++
Sbjct: 362 WLFLRDNQLSG--------PIPPGIANSTELTVLQLDTNNFTGFLPDTICR-GGKLENLT 412
Query: 347 AYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY 406
+ G +PK + + + LI + N +G I + G L + L +NN G +
Sbjct: 413 LDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSA 472
Query: 407 D------LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIN 460
+ L L+ N ++G IPP + ++T L +L L SN++T +P S+ ++ I ++
Sbjct: 473 NWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQ 532
Query: 461 LSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIG--------------------- 499
L+ N L+ +PS ++ L L LDLS N+ S IP T+
Sbjct: 533 LNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPE 592
Query: 500 ---ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFN 556
L L+ L L+ NQ G I SL +LE LDLS NN SG+IP S + + L +
Sbjct: 593 GLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVD 652
Query: 557 VSQNMLEGEIPVKGSFKN 574
VS N L+G IP +F+N
Sbjct: 653 VSHNNLQGPIPDNAAFRN 670
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 278 bits (711), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 190/543 (34%), Positives = 282/543 (51%), Gaps = 18/543 (3%)
Query: 31 SWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLG 90
SW+G+ CD R Q V LNLS G+ G P + +L L + ++ N F+G +P++LG
Sbjct: 58 SWLGVECD-RRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCS 116
Query: 91 RLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVI 150
L+ I S N +G+IP +G L L+ +SL N++ GP P SL ++ LE + + N +
Sbjct: 117 LLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGL 176
Query: 151 DGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIS 210
+G+IPS IGN+S L L L N +P+ +GN+ L+ L L NNL G +P + N+
Sbjct: 177 NGSIPSNIGNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLE 236
Query: 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270
+ L++ +N G +P S I+ ++L+ N G +P L N + L S +
Sbjct: 237 NLVYLDVRNNSLVGAIPLDF-VSCKQIDTISLSNNQFTGGLPPGLGNCTSLREFGAFSCA 295
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
SG IP+ FG L L+ L + N+ + L C+ + L L N L G
Sbjct: 296 LSGPIPSCFGQLTKLDTLYLAGNHFSGR--------IPPELGKCKSMIDLQLQQNQLEGE 347
Query: 331 LPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390
+P +G S LQ + Y L G +P I ++ L L L N+L+G +P + L+QL
Sbjct: 348 IPGELGMLS-QLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQL 406
Query: 391 QGLSLEDNNLEGSIPYDLCH------LELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS 444
L+L +N+ G IP DL L+L N +GHIPP L S L+ L LG N L
Sbjct: 407 VSLALYENHFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEG 466
Query: 445 SIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDL 504
S+PS L + + L N+L LP V+K +L DLS N +G IP ++G L ++
Sbjct: 467 SVPSDLGGCSTLERLILEENNLRGGLPDFVEKQNLL-FFDLSGNNFTGPIPPSLGNLKNV 525
Query: 505 ETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564
+ L+SNQ G IP +GSL+ LE L+LS N G +P L L + + S N+L G
Sbjct: 526 TAIYLSSNQLSGSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNG 585
Query: 565 EIP 567
IP
Sbjct: 586 SIP 588
|
Possible role in short-day photoperiod floral induction. Ipomoea nil (taxid: 35883) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 574 | ||||||
| 298204751 | 1979 | unnamed protein product [Vitis vinifera] | 0.944 | 0.273 | 0.467 | 1e-124 | |
| 224139658 | 1019 | predicted protein [Populus trichocarpa] | 0.980 | 0.552 | 0.466 | 1e-124 | |
| 255578886 | 1043 | serine-threonine protein kinase, plant-t | 0.942 | 0.518 | 0.474 | 1e-121 | |
| 255572272 | 1089 | serine-threonine protein kinase, plant-t | 0.905 | 0.477 | 0.495 | 1e-120 | |
| 224072373 | 1067 | predicted protein [Populus trichocarpa] | 0.956 | 0.514 | 0.441 | 1e-120 | |
| 224116832 | 1061 | predicted protein [Populus trichocarpa] | 0.883 | 0.477 | 0.499 | 1e-120 | |
| 147853795 | 1420 | hypothetical protein VITISV_005816 [Viti | 0.925 | 0.373 | 0.461 | 1e-119 | |
| 359483685 | 1046 | PREDICTED: LRR receptor-like serine/thre | 0.952 | 0.522 | 0.441 | 1e-119 | |
| 359485451 | 1454 | PREDICTED: LRR receptor-like serine/thre | 0.925 | 0.365 | 0.454 | 1e-118 | |
| 224075305 | 1009 | predicted protein [Populus trichocarpa] | 0.956 | 0.544 | 0.433 | 1e-118 |
| >gi|298204751|emb|CBI25249.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 292/624 (46%), Positives = 371/624 (59%), Gaps = 82/624 (13%)
Query: 32 WVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGR 91
W+G+SC+++ QRV AL+LS +GL GTIPP LGNLSFL+SLD++ NNF+G +P G L R
Sbjct: 539 WIGVSCNAQQQRVIALDLSNLGLRGTIPPDLGNLSFLVSLDLSSNNFHGPIPPSFGNLNR 598
Query: 92 LKF------------------------------------------------ISFSFNKLS 103
L+ I+ ++N LS
Sbjct: 599 LQSLFLGNNSFTGTIPPSIGNMSMLETLDIQSNQLVGAIPSAIFNISSLQEIALTYNSLS 658
Query: 104 GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIP-------- 155
G+IP I L L+ + LR+N+ T PIP+++F +S L+ + N G++P
Sbjct: 659 GTIPEEISFLPSLEYLYLRSNSFTSPIPSAIFKISTLKAIDLGKNGFSGSMPLDIMCAHR 718
Query: 156 ------------------SGIGNLSNLFDLDLRHNNL-QDQIPTEIGNLQNLESLALGTN 196
GIGN ++L +L L N+L ++P EIG+L L L + N
Sbjct: 719 PSLQLIGLDSNRFTGTIHGGIGNCTSLRELYLSSNDLTAGEVPCEIGSLCTLNVLNIEDN 778
Query: 197 NLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLT 256
+L+G IP IFNIS++ +L N SG LP G LPN+E L L IN L G IP S+
Sbjct: 779 SLTGHIPFQIFNISSMVSGSLTRNNLSGNLPPNFGSYLPNLENLILEINWLSGIIPSSIG 838
Query: 257 NASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRK 316
NASKL LD G N +G IP+ G+LR L L++ NNL ES + SFL+SLTNC++
Sbjct: 839 NASKLRSLDFGYNMLTGSIPHALGSLRFLERLNLGVNNLKGESY-IQELSFLTSLTNCKR 897
Query: 317 LSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDL 376
L L L NPL GILP IGN S SLQ F A CKL G+IP EIGNL L LL+L+ NDL
Sbjct: 898 LRILYLSFNPLIGILPISIGNLSTSLQRFEANTCKLKGNIPTEIGNLSNLYLLSLNNNDL 957
Query: 377 NGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLE------LNGNKLSGHIPPCLASLT 430
GTIP S+G LQ+LQGL L N L+GSIP D+C L L N+LSG IP CL LT
Sbjct: 958 TGTIPPSIGQLQKLQGLYLPSNKLQGSIPNDICQLRNLGELFLTNNQLSGSIPACLGELT 1017
Query: 431 SLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQL 490
LR L LGSNKL S+IPS+LWSL +IL +++SSN L LPS++ LKVL +DLSRNQL
Sbjct: 1018 FLRHLYLGSNKLNSTIPSTLWSLIHILSLDMSSNFLVGYLPSDMGNLKVLVKIDLSRNQL 1077
Query: 491 SGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALS 550
SG IPS IG L DL +LSLA N+F+GPI S +L SLE +DLS N G+IPKSLE L
Sbjct: 1078 SGEIPSNIGGLQDLTSLSLAHNRFEGPILHSFSNLKSLEFMDLSDNALFGEIPKSLEGLV 1137
Query: 551 HLKQFNVSQNMLEGEIPVKGSFKN 574
+LK +VS N L GEIP +G F N
Sbjct: 1138 YLKYLDVSFNGLYGEIPPEGPFAN 1161
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139658|ref|XP_002323215.1| predicted protein [Populus trichocarpa] gi|222867845|gb|EEF04976.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 280/600 (46%), Positives = 370/600 (61%), Gaps = 37/600 (6%)
Query: 11 FQSHLAI----MLLYLLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLS 66
F+ H+ ML + + +W+G+SC R QRV AL+LS MGL GTIPP LGNLS
Sbjct: 38 FKDHITFDPQNMLTHSWSSKTSFCNWMGVSCSLRRQRVTALDLSSMGLLGTIPPQLGNLS 97
Query: 67 FLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI-PTWIGVLSKLQIMSLRNNN 125
FL L + N+F+G LP+E+G L RL+ + NKLS I P G L +L+ + NN
Sbjct: 98 FLQYLILYNNSFHGDLPSEIGNLRRLQVMDIGSNKLSLVIVPESFGNLHRLEELRFDGNN 157
Query: 126 ITGPIPNSLFNLS-------------------------KLEMLQASFNVIDGNIPSGIGN 160
+TG IP+++FN+S +LEML S N + G IPS +
Sbjct: 158 LTGTIPSTIFNISSLKVLDLMFNGLFGSLPKNMCDHLPRLEMLLLSSNQLSGQIPSDLFK 217
Query: 161 LSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSN 220
L L L +NN IP E+G L LE L LG N LSG +P +IFN++++R + + N
Sbjct: 218 CRELQLLWLPYNNFTGVIPEELGFLPMLEVLNLGVNMLSGDLPRSIFNMTSLRTMQICCN 277
Query: 221 QFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFG 280
SG +P LPN+E L L +N + G++P L N S+L LDL N +G++ FG
Sbjct: 278 NLSGSIPQENSIDLPNLEELQLNLNGITGSMPRFLGNMSRLEILDLSYNKMTGNVLQEFG 337
Query: 281 NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSA 340
NLR L VLS+++N+ T SS +F++SLTN R+L L + NPL G+LP +GN S+
Sbjct: 338 NLRALQVLSLQSNSFTNHPSS-QTLNFITSLTNSRQLKELHIGDNPLDGMLPNSVGNLSS 396
Query: 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNL 400
L FY Y KL G+IP EIGNL LI+L+L+ N L G IPT+VG L+++Q L L NNL
Sbjct: 397 FLTKFYVYASKLKGNIPGEIGNLSNLIVLSLEENSLMGPIPTTVGGLRKIQVLYLHKNNL 456
Query: 401 EGSIPYDLC------HLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLE 454
GSIP D+C + LN N LSG IP C+ +LTSLR L L N L+S+IP +LWSL+
Sbjct: 457 NGSIPSDICLARRLVDITLNNNVLSGEIPSCIGNLTSLRNLYLHFNILSSTIPMALWSLK 516
Query: 455 YILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQF 514
+L +NL SN L SLPS V +++ + LS NQLSGNIPSTIG+L +L SL+ N F
Sbjct: 517 DLLILNLHSNFLYGSLPSQVGEMEAAIGIRLSSNQLSGNIPSTIGSLQNLIRFSLSKNSF 576
Query: 515 QGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
QG IPE+ G L+SLE LDLS NN SG+IPKSLEAL +L+ F+VS N L+GEIP G F N
Sbjct: 577 QGSIPEAFGGLVSLELLDLSQNNLSGEIPKSLEALRYLEFFSVSFNGLQGEIPRGGPFAN 636
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578886|ref|XP_002530297.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223530195|gb|EEF32104.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 285/601 (47%), Positives = 363/601 (60%), Gaps = 60/601 (9%)
Query: 31 SWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLG 90
+WVG++C +RH RV AL+LS MGL GTIPPHLGNLSFL + N F+G LP+EL KL
Sbjct: 65 TWVGVTCGARHGRVTALDLSDMGLTGTIPPHLGNLSFLAFISFYNNRFHGSLPDELSKLR 124
Query: 91 RLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNIT----------------------- 127
R+K S N SG IP+WIG ++LQ +SL +N T
Sbjct: 125 RIKAFGMSTNYFSGEIPSWIGSFTQLQRLSLSSNKFTGLLPAILANNTISSLWLLDFGTN 184
Query: 128 ----------------------------GPIPNSLFNLSKLEMLQASFNVIDGNIPSGIG 159
GPIP++L +L++L SFN +G+I IG
Sbjct: 185 NLTGRLPPNIFTHLANLRALYLNSNLFNGPIPSTLMACQQLKLLALSFNHFEGSIHKDIG 244
Query: 160 NLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHS 219
NL+ L +L L NN IP EIG+L +LE + L N LSGL+P I+N S + + L
Sbjct: 245 NLTMLQELYLGGNNFSGTIPDEIGDLAHLEEIILNVNGLSGLVPSGIYNASKMTAIGLAL 304
Query: 220 NQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTF 279
NQ SG LPS+ +LPN+E+ + NN G IP SL NASKL +DLG NSF G IP+
Sbjct: 305 NQLSGYLPSS--SNLPNLEFFIIEDNNFTGPIPVSLFNASKLGNIDLGWNSFYGPIPDEL 362
Query: 280 GNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFS 339
GNL+ L V S N+LT +SSS+ S SSLT C+ L L +NPL G LP +GN S
Sbjct: 363 GNLKSLEVFSFWVNHLTVKSSSSGL-SLFSSLTKCKHLRRFDLSNNPLNGNLPISVGNLS 421
Query: 340 ASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNN 399
+SL+ ++C + G+IPKEIGNL L L L NDL GTIPT++ L +LQ L L N
Sbjct: 422 SSLEVVEIFDCGITGTIPKEIGNLSSLSWLDLGANDLRGTIPTTIRKLGKLQELKLHYNR 481
Query: 400 LEGSIPYDLCHLE------LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSL 453
LEGS PY+LC L+ L N LSG IP CL ++ SLR L +G NK +S+IPS+LW L
Sbjct: 482 LEGSFPYELCDLQSLAYLYLEVNALSGQIPSCLGNVNSLRTLSMGMNKFSSTIPSTLWRL 541
Query: 454 EYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQ 513
ILE+NLSSNSL+ SL ++ LK + ++DLS NQLSG+IPS+IG L L LSLA N+
Sbjct: 542 ADILELNLSSNSLSGSLAVDIGNLKAVTLIDLSGNQLSGHIPSSIGGLKTLLNLSLAVNR 601
Query: 514 FQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFK 573
+G IP+ G ISL+ LDLS NN SG+IPKSLE L +L FNVS N L+GEIP +F
Sbjct: 602 LEGSIPQLFGDAISLQLLDLSNNNLSGEIPKSLEELRYLTYFNVSFNELQGEIPNGRAFI 661
Query: 574 N 574
N
Sbjct: 662 N 662
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572272|ref|XP_002527075.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533580|gb|EEF35319.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/529 (49%), Positives = 350/529 (66%), Gaps = 9/529 (1%)
Query: 54 LGGTIPPHLG-NLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGV 112
LGG I ++G NLS L L++ LN G P ++ L LKFI N LSG++ +
Sbjct: 178 LGGNILDNIGGNLSNLQVLNMGLNQLSGSFPPKILDLPSLKFIYLQVNNLSGNLKEILCN 237
Query: 113 L-SKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRH 171
SKLQ+++L N + G IP+ L+ +L L N G+IP IGNL+ L L L
Sbjct: 238 QNSKLQLLNLAGNQLYGQIPSDLYKCKELRSLALHANKFTGSIPRTIGNLTKLKWLSLGR 297
Query: 172 NNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIG 231
NNL +IP EIGNLQNL+ + L NNL+G IP A+FNIST++ + + SN G LP+++G
Sbjct: 298 NNLTGRIPLEIGNLQNLQIVHLSFNNLNGSIPHALFNISTMKWIAMTSNNLLGNLPTSLG 357
Query: 232 HSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIR 291
LPN+ +L L IN L G IP ++NASKL L+L SNSF+G IP++ G+LR+L L +
Sbjct: 358 LHLPNLIWLYLGINKLSGPIPSYISNASKLTILELPSNSFTGFIPDSLGDLRNLQTLKLG 417
Query: 292 TNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECK 351
N L+++ +S + + SSL NC+ L YL L NPL G LP +GN S SL+SF A +
Sbjct: 418 ANLLSSKKTS-QELTIFSSLKNCQNLKYLWLSYNPLDGYLPHSVGNLSNSLESFLASDGL 476
Query: 352 LGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLC-- 409
+ GS+ + IGNL L L L NDL G IPT++GTL+ LQGL L N+L+GSIP +LC
Sbjct: 477 IKGSVHESIGNLSSLTRLNLGNNDLTGRIPTTIGTLKHLQGLYLHGNDLDGSIPSELCDL 536
Query: 410 ----HLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNS 465
+LEL GNKLSG IP C ++LTSLR L L SN+ S+I S+LW+L+ IL++NL+SN
Sbjct: 537 RTLYNLELTGNKLSGSIPTCFSNLTSLRNLFLASNRFVSTISSTLWTLKDILQVNLASNY 596
Query: 466 LNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL 525
L SLPS ++ L+ + ++++S+NQLSG IP +IG L DL L L+ N+ QGPIP+SVG +
Sbjct: 597 LTGSLPSEIENLRAVYMINISKNQLSGEIPISIGGLQDLAQLYLSGNKLQGPIPQSVGDI 656
Query: 526 ISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
SLE LDLS NN SG IPKSL+ L +LK FNVS N L+GEIP GSF N
Sbjct: 657 KSLEFLDLSSNNLSGMIPKSLDNLLYLKYFNVSFNYLQGEIPEGGSFSN 705
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224072373|ref|XP_002303705.1| predicted protein [Populus trichocarpa] gi|222841137|gb|EEE78684.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 274/621 (44%), Positives = 364/621 (58%), Gaps = 72/621 (11%)
Query: 25 TTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPN 84
TT SW+G++C ++ RV LNLS M L G IP +GNLSFL L + NNF G LPN
Sbjct: 38 TTASVCSWIGVTCGAQRDRVSGLNLSHMSLSGYIPSEIGNLSFLSFLSIRNNNFQGSLPN 97
Query: 85 ELGKLGRLKFISFSFNKLSGSIPTWIGV------------------------LSKLQIMS 120
EL +L L+++ F FN +G IP +G +S LQ ++
Sbjct: 98 ELARLLHLEYLDFGFNSFTGDIPPSLGSLPKLKSLLLEANFFLGNLPLSLWNISSLQTIN 157
Query: 121 LRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGN--------------LSNLF- 165
+ N + G +P+S+F+ S L + SFN + G IP+ I N LS++F
Sbjct: 158 ISYNQLHGFMPSSIFSRSSLYTIDLSFNHLSGEIPADIFNHLPELRGIYFSRNRLSDIFF 217
Query: 166 --------------------------DLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLS 199
+++ NNL +P E+G L NL++L + N L
Sbjct: 218 YCLRKMDFGEFAGSIPRTIGNCTLIEEINFSENNLTGVLPPELGGLTNLKTLRMDDNALI 277
Query: 200 GLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNAS 259
+P A+FNIS I V+ +++N SG LP T+G +PN+ L L N L GTIP S++NAS
Sbjct: 278 DNVPSALFNISAIEVIGMYANLLSGSLPPTMGLFMPNLRELRLGGNELEGTIPSSISNAS 337
Query: 260 KLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSY 319
L +DL +NSF+G IP T GNLR L VL++ N+LT+ESS+ Q S LS+L NC+ L
Sbjct: 338 TLAVVDLSNNSFTGLIPGTIGNLRQLQVLNLANNHLTSESSTP-QLSILSALENCKNLRR 396
Query: 320 LVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGT 379
+ NPL LP GN S+SL+ F+A +C L G+IP IGNL LI L+L N+L
Sbjct: 397 IYFSVNPLNTTLPISFGNLSSSLEQFWADDCNLKGNIPNTIGNLSSLIALSLANNELASV 456
Query: 380 IPTSVGTLQQLQGLSLEDNNLEGSIPYDLCH------LELNGNKLSGHIPPCLASLTSLR 433
+PT+ L LQ L L+ N LEG+I +LCH L L GNKLSG IP CL +LT+LR
Sbjct: 457 VPTTTERLTNLQLLDLQGNQLEGNITDNLCHSDSLFDLSLGGNKLSGSIPECLGNLTTLR 516
Query: 434 ELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGN 493
L L SN TS+IP SL +L IL +NLSSN L+ SLP ++L V +DLSRNQLSG
Sbjct: 517 HLNLSSNNFTSTIPLSLGNLAGILVLNLSSNFLSGSLPLVFRQLMVAEEIDLSRNQLSGQ 576
Query: 494 IPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLK 553
IP++ L +L LSLA+N+ QGPIP S+ +SLE LDLS N+ SG IPKSLE L HLK
Sbjct: 577 IPNSTWDLKNLAYLSLATNRLQGPIPGSLSFAVSLEFLDLSHNSLSGLIPKSLETLLHLK 636
Query: 554 QFNVSQNMLEGEIPVKGSFKN 574
FNVS N+L+GEIP +G F+N
Sbjct: 637 YFNVSFNVLQGEIPSEGPFRN 657
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116832|ref|XP_002317405.1| predicted protein [Populus trichocarpa] gi|222860470|gb|EEE98017.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/515 (49%), Positives = 335/515 (65%), Gaps = 8/515 (1%)
Query: 66 SFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNN 125
S L L++ N +G +P+ L K L+ + N+ +GSIP I L+KL+ + L NN
Sbjct: 163 STLEVLNLGYNQLHGRIPSNLHKCTELRVLDLESNRFTGSIPKEICTLTKLKELYLGKNN 222
Query: 126 ITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNL 185
+TG IP + L LE L N ++GNIP IGN + L ++ + +NNL IP E+GNL
Sbjct: 223 LTGQIPGEIARLVSLEKLGLEVNGLNGNIPREIGNCTYLMEIHVENNNLTGVIPNEMGNL 282
Query: 186 QNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAIN 245
L+ L LG NN++G IP FN S +R +N+ N SG LPS G LPN+E L L N
Sbjct: 283 HTLQELDLGFNNITGSIPSTFFNFSILRRVNMAYNYLSGHLPSNTGLGLPNLEELYLEKN 342
Query: 246 NLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQW 305
L G IPDS+ NASKLI LDL NSFSG IP+ GNLR+L L++ N LT++S ++
Sbjct: 343 ELSGPIPDSIGNASKLIVLDLSYNSFSGRIPDLLGNLRNLQKLNLAENILTSKSLRSELS 402
Query: 306 SFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRG 365
LSSL+NCR L+YL + NPL G LP IGN SASL+ YA++C++ G+IP+ IGNL
Sbjct: 403 F-LSSLSNCRSLAYLRFNGNPLRGRLPVSIGNLSASLEELYAFDCRIIGNIPRGIGNLSN 461
Query: 366 LILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLE------LNGNKLS 419
LI L L N+L G IP+ +G L+ LQ SL N L+G IP ++CHLE L N S
Sbjct: 462 LIGLILQQNELTGAIPSEIGRLKHLQDFSLASNKLQGHIPNEICHLERLSYLYLLENGFS 521
Query: 420 GHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKV 479
G +P CL+++TSLREL LGSN+ T SIP++ WSL+ +L+INLS NSL +LP + LKV
Sbjct: 522 GSLPACLSNITSLRELYLGSNRFT-SIPTTFWSLKDLLQINLSFNSLTGTLPLEIGNLKV 580
Query: 480 LRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539
+ V+D S NQLSG+IP++I L +L SL+ N+ QGPIP S G L+SLE LDLS N+ S
Sbjct: 581 VTVIDFSSNQLSGDIPTSIADLQNLAHFSLSDNRMQGPIPSSFGDLVSLEFLDLSRNSLS 640
Query: 540 GKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
G IPKSLE L HLK FNVS N L+GEI G F N
Sbjct: 641 GAIPKSLEKLVHLKTFNVSFNRLQGEILDGGPFAN 675
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853795|emb|CAN81714.1| hypothetical protein VITISV_005816 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 271/587 (46%), Positives = 352/587 (59%), Gaps = 56/587 (9%)
Query: 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKL 102
+++ ++LS G IP L + L L ++LN F G +P +G L L+ + ++N L
Sbjct: 240 KLEMIDLSINQFKGEIPSSLSHCRQLRGLSLSLNQFTGGIPQAIGSLSNLEEVYLAYNNL 299
Query: 103 SGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEM-------------------- 142
+G IP IG LS L + L + I+GPIP +FN+S L+M
Sbjct: 300 AGGIPREIGNLSNLNSLQLGSCGISGPIPPEIFNISSLQMIDLTDNSLHGSLPMDICKHL 359
Query: 143 -----LQASFNVIDG------------------------NIPSGIGNLSNLFDLDLRHNN 173
L SFN + G NIP GNL+ L DL+L NN
Sbjct: 360 HNLQGLYLSFNQLSGQLPTTLSLCGQLLSLSLWGNRFTGNIPPSFGNLTVLQDLELXENN 419
Query: 174 LQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHS 233
+Q IP E+GNL NL++L L NNL+G+IP AIFNIS ++ L L N FSG LPS+IG
Sbjct: 420 IQGNIPNELGNLINLQNLKLSVNNLTGIIPEAIFNISKLQTLXLAQNHFSGSLPSSIGTQ 479
Query: 234 LPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTN 293
LP++E L + N G IP S++N S+L LD+ +N F+G +P GNLR L L++ N
Sbjct: 480 LPDLEGLAIGXNEFSGIIPMSISNMSELTVLDIWANFFTGDVPKDLGNLRRLEFLNLGFN 539
Query: 294 NLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLG 353
LT E S++ + FL+SLTNC+ L L ++ NPL GILP +GN S SL+SF A C+
Sbjct: 540 QLTDEHSTS-EVGFLTSLTNCKFLRRLWIEDNPLKGILPNSLGNLSISLESFDASACQFK 598
Query: 354 GSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHL-- 411
G+IP IGNL LI L L+ NDL G IP S G LQ+LQ ++ N + GSIP LCHL
Sbjct: 599 GTIPTGIGNLINLIDLRLNDNDLTGLIPISFGHLQKLQWFAISGNRIHGSIPSVLCHLRN 658
Query: 412 ----ELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467
+L+ NKLSG IP C +LT+LR + L SN L S IPSSLW+L +L +NLSSN LN
Sbjct: 659 LGYLDLSSNKLSGTIPGCFGNLTALRNISLHSNGLASEIPSSLWTLRDLLVLNLSSNFLN 718
Query: 468 DSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLIS 527
LP V +K L VLDLS+NQ SGNIPSTI L +L L L+ N+ QG +P + G+L+S
Sbjct: 719 CQLPLEVGNMKSLLVLDLSKNQFSGNIPSTISLLQNLLQLYLSHNKLQGHMPPNFGALVS 778
Query: 528 LESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
LE LDLSGNNFSG IP SLEAL +LK NVS N L+GEIP +G F N
Sbjct: 779 LEYLDLSGNNFSGTIPTSLEALKYLKYLNVSFNKLQGEIPNRGPFAN 825
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483685|ref|XP_002263372.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 281/637 (44%), Positives = 359/637 (56%), Gaps = 90/637 (14%)
Query: 25 TTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPN 84
T + +W GISC++ QRV A+NLS MGL GTI P +GNLSFL+SLD+T N+F G +PN
Sbjct: 34 TKSSYCNWYGISCNAPQQRVSAINLSNMGLEGTIAPQVGNLSFLVSLDLTYNDFTGSIPN 93
Query: 85 ELGKLGRLKFISF----------------------------------------------- 97
+G L L+ +S
Sbjct: 94 GIGNLVELQRLSLRNNSLTGEIPSNLSHCRELRGLSLSINQFTGGIPQAIGSLSNLEELY 153
Query: 98 -SFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPS 156
++NKL+G IP IG LS L I+ L +N I+GPIP +F +S L+ + + N + G++P
Sbjct: 154 LNYNKLTGGIPREIGNLSNLNILQLGSNGISGPIPAEIFTVSSLQRIIFANNSLSGSLPM 213
Query: 157 GI-GNLSNLFDLDLRHNNLQDQIPT------------------------EIGNLQNLESL 191
I +L NL L L N+L Q+PT EIGNL LE +
Sbjct: 214 DICKHLPNLQGLYLSQNHLSGQLPTTLSLCRELLSLALPMNKFTGSIPREIGNLSKLEEI 273
Query: 192 ALGTNNLSGLIPPAI----------FNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241
L N+L G IP + FNIS ++ L L N SG LPS+IG LP++E L
Sbjct: 274 DLSENSLIGSIPTSFGNLMTLKFLSFNISKLQTLGLVQNHLSGSLPSSIGTWLPDLEGLY 333
Query: 242 LAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSS 301
+ IN GTIP S++N SKL L L NSF+G++P NL L L + N LT E
Sbjct: 334 IGINEFSGTIPMSISNMSKLTVLSLSDNSFTGNVPKDLCNLTKLQFLDLAYNQLTDEHL- 392
Query: 302 ADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIG 361
A FL+SLTNC+ L L + NPL G LP +GN +L+ F A C+ G+IP IG
Sbjct: 393 ASGVGFLTSLTNCKFLRNLWIGYNPLTGTLPNSLGNLPIALEIFIASACQFRGTIPTGIG 452
Query: 362 NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLE------LNG 415
NL LI L L NDL G+IPT++G LQ+LQ LS+ N + GSIP DLCHL+ L+
Sbjct: 453 NLTNLIWLDLGANDLTGSIPTTLGQLQKLQALSIVGNRIRGSIPNDLCHLKNLGYLRLSY 512
Query: 416 NKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQ 475
NKLSG IP C L +LREL L SN L +IP S WSL +L +NLSSN L +LP V
Sbjct: 513 NKLSGSIPSCFGDLPALRELSLDSNVLAFNIPMSFWSLRDLLVLNLSSNFLTGNLPPEVG 572
Query: 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 535
+K + LDLS+N +SG IPS +G L +L TLSL+ N+ QGPIP G L+SLESLDLS
Sbjct: 573 NMKSITTLDLSKNLVSGYIPSRMGKLQNLITLSLSQNKLQGPIPVEFGDLVSLESLDLSQ 632
Query: 536 NNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSF 572
NN SG IPK+LEAL +LK NVS N L+GEIP G F
Sbjct: 633 NNLSGTIPKTLEALIYLKYLNVSFNKLQGEIPNGGPF 669
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485451|ref|XP_002276944.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 267/587 (45%), Positives = 351/587 (59%), Gaps = 56/587 (9%)
Query: 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKL 102
+++ ++LS L G IP L + L L ++LN F G +P +G L L+ + ++N L
Sbjct: 494 KLEFIDLSSNQLKGEIPSSLSHCPHLRGLSLSLNQFTGGIPQAIGSLSNLEELYLAYNNL 553
Query: 103 SGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEM-------------------- 142
G IP IG LS L I+ ++ I+GPIP +FN+S L++
Sbjct: 554 VGGIPREIGNLSNLNILDFGSSGISGPIPPEIFNISSLQIFDLTDNSLLGSLPMDIYKHL 613
Query: 143 --LQASF---------------------------NVIDGNIPSGIGNLSNLFDLDLRHNN 173
LQ + N GNIP GNL+ L DL+L NN
Sbjct: 614 PNLQELYLSWNKLSGQLPSTLSLCGQLQSLSLWGNRFTGNIPPSFGNLTALQDLELGDNN 673
Query: 174 LQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHS 233
+Q IP E+GNL NL++L L NNL+G+IP AIFNIS ++ L+L N FSG LPS++G
Sbjct: 674 IQGNIPNELGNLINLQNLKLSENNLTGIIPEAIFNISKLQSLSLAQNHFSGSLPSSLGTQ 733
Query: 234 LPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTN 293
LP++E L + N G IP S++N S+L LD+ N F+G +P GNLR L L++ +N
Sbjct: 734 LPDLEGLAIGRNEFSGIIPMSISNMSELTELDIWDNFFTGDVPKDLGNLRRLEFLNLGSN 793
Query: 294 NLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLG 353
LT E S A + FL+SLTNC L L ++ NPL GILP +GN S SL+SF A C+
Sbjct: 794 QLTDEHS-ASEVGFLTSLTNCNFLRTLWIEDNPLKGILPNSLGNLSISLESFDASACQFR 852
Query: 354 GSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLE- 412
G+IP IGNL LI L L NDL G IPT++G L++LQ L + N L GSIP DLC L+
Sbjct: 853 GTIPTGIGNLTSLISLELGDNDLTGLIPTTLGQLKKLQELGIAGNRLRGSIPNDLCRLKN 912
Query: 413 -----LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467
L+ N+L+G IP CL L LREL L SN L S+IP SLW+L +L +NLSSN L
Sbjct: 913 LGYLFLSSNQLTGSIPSCLGYLPPLRELYLHSNALASNIPPSLWTLRGLLVLNLSSNFLT 972
Query: 468 DSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLIS 527
LP V +K +R LDLS+NQ+SG+IP T+G L +LE LSL+ N+ QGPIP G L+S
Sbjct: 973 GHLPPEVGNIKSIRTLDLSKNQVSGHIPRTLGELQNLEDLSLSQNRLQGPIPLEFGDLLS 1032
Query: 528 LESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
L+ LDLS NN SG IPKSL+AL++LK NVS N L+GEIP G F N
Sbjct: 1033 LKFLDLSQNNLSGVIPKSLKALTYLKYLNVSFNKLQGEIPDGGPFMN 1079
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224075305|ref|XP_002304590.1| predicted protein [Populus trichocarpa] gi|222842022|gb|EEE79569.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 271/625 (43%), Positives = 361/625 (57%), Gaps = 76/625 (12%)
Query: 25 TTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPN 84
TT SW+G++C + RV LNLS M L G IP +GNLSFL L + N F+G LPN
Sbjct: 54 TTASVCSWIGVTCGAPRDRVSGLNLSHMSLSGYIPSEIGNLSFLAFLSIRNNTFHGSLPN 113
Query: 85 ELGKLGRLKFISFSFNKLSGSIPTWIGV------------------------LSKLQIMS 120
EL L L+++ F FN +G IP +G +S LQ ++
Sbjct: 114 ELAHLLHLEYLDFGFNSFTGDIPPSLGSLPKLKSLLLEANFFLGTLPLSLWNISSLQTIN 173
Query: 121 LRNNNITGPIPNSLFNLSKLEMLQASFNVI------------------------------ 150
+ N + G +P+S+F+ S L + SFN +
Sbjct: 174 ISYNQLHGFMPSSIFSRSSLYTIDLSFNHLSGEIPADIFNHLPELRGIYFSRNRLSDIAI 233
Query: 151 ---------------DGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGT 195
+G+IP IGN + + +++ NNL +P E+G L NL++L +
Sbjct: 234 DSAVDALCILCNYAPEGSIPRTIGNCTLIEEINFSENNLTGVLPPELGGLSNLKTLRMDD 293
Query: 196 NNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSL 255
N L G +P A+FNIS I V+ +++N SG LP T+G +PN+ L L N L GTIP S+
Sbjct: 294 NALIGNVPSALFNISAIEVIGMYTNLLSGSLPPTMGLFMPNLRELRLGGNELEGTIPSSI 353
Query: 256 TNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCR 315
+NAS L +DL +NSF+G IP T GNLR L VL++ N+LT+ESS+ Q S LS+L NC+
Sbjct: 354 SNASTLAVVDLSNNSFTGLIPGTIGNLRQLQVLNLANNHLTSESSTP-QLSILSALGNCK 412
Query: 316 KLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFND 375
L + NPL LP GN S+SL+ F+A +C L G+IP IGNL LI L+L N+
Sbjct: 413 NLRRIYFSVNPLNTTLPISFGNLSSSLEQFWADDCNLKGNIPNTIGNLSSLIALSLANNE 472
Query: 376 LNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCH------LELNGNKLSGHIPPCLASL 429
L +PT+ L LQ L L+ N LEG+I +LCH L L GNKLSG IP CL +L
Sbjct: 473 LASVVPTTTERLTNLQLLDLQGNQLEGNITDNLCHSDSLFDLSLGGNKLSGSIPECLGNL 532
Query: 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQ 489
T+LR L L SN TS+IP SL +L IL +NLSSN L+ SLP ++L V +DLSRNQ
Sbjct: 533 TTLRHLNLSSNNFTSTIPLSLGNLAGILVLNLSSNFLSGSLPLVFRQLMVAEEIDLSRNQ 592
Query: 490 LSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEAL 549
LSG IP++ +L LSLA+N+ QGPIP S+ +SLE LDLS N+ SG IPKSLE L
Sbjct: 593 LSGQIPNSTWFHKNLAYLSLATNRLQGPIPGSLSFAVSLEFLDLSHNSLSGLIPKSLETL 652
Query: 550 SHLKQFNVSQNMLEGEIPVKGSFKN 574
HLK FNVS N+L+GEIP +G F+N
Sbjct: 653 LHLKYFNVSFNVLQGEIPSEGPFRN 677
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 574 | ||||||
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.942 | 0.524 | 0.385 | 1.2e-97 | |
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.940 | 0.534 | 0.392 | 4.1e-97 | |
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.942 | 0.527 | 0.389 | 9.7e-96 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.987 | 0.553 | 0.399 | 2.6e-95 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.942 | 0.536 | 0.385 | 5e-92 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.942 | 0.535 | 0.367 | 2.2e-89 | |
| UNIPROTKB|O24435 | 813 | O24435 "Receptor kinase-like p | 0.879 | 0.621 | 0.369 | 5.8e-82 | |
| TAIR|locus:2131518 | 1091 | AT4G26540 [Arabidopsis thalian | 0.902 | 0.474 | 0.366 | 2.3e-78 | |
| TAIR|locus:2156349 | 1252 | GSO2 "GASSHO 2" [Arabidopsis t | 0.905 | 0.415 | 0.374 | 2.8e-78 | |
| TAIR|locus:2120362 | 1249 | GSO1 "GASSHO1" [Arabidopsis th | 0.893 | 0.410 | 0.370 | 9.8e-78 |
| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 212/550 (38%), Positives = 314/550 (57%)
Query: 31 SWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLG 90
+W+G++C R +RV +LNL G L G I P +GNLSFL L++ N+F +P ++G+L
Sbjct: 62 NWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLF 121
Query: 91 RLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVI 150
RL++++ S+N L G IP+ + S+L + L +N++ +P+ L +LSKL +L S N +
Sbjct: 122 RLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNL 181
Query: 151 DGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIS 210
GN P+ +GNL++L LD +N ++ +IP E+ L + + N+ SG PPA++NIS
Sbjct: 182 TGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNIS 241
Query: 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270
++ L+L N FSG L + G+ LPN+ L L N G IP +L N S L D+ SN
Sbjct: 242 SLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNY 301
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
SG IP +FG LR+L L IR N+L SSS + F+ ++ NC +L YL + N LGG
Sbjct: 302 LSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLE--FIGAVANCTQLEYLDVGYNRLGGE 359
Query: 331 LPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390
LP I N S +L S + + + G+IP +IGNL L L+L+ N L+G +P S G L L
Sbjct: 360 LPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNL 419
Query: 391 QGLSLEDNNLEGSIP-Y-----DLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS 444
Q + L N + G IP Y L L LN N G IP L L +L + +N+L
Sbjct: 420 QVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNG 479
Query: 445 SIPSSLWSLEYILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDL 504
+IP + + + I V KL++L L S N+LSG +P IG + +
Sbjct: 480 TIPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSM 539
Query: 505 ETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564
E L + N F G IP+ + L+SL+++D S NN SG+IP+ L +L L+ N+S N EG
Sbjct: 540 EFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEG 598
Query: 565 EIPVKGSFKN 574
+P G F+N
Sbjct: 599 RVPTTGVFRN 608
|
|
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
Identities = 216/550 (39%), Positives = 322/550 (58%)
Query: 31 SWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLG 90
+W G++C +++RV L L + LGG I P +GNLSFL+SLD+ N F G +P E+G+L
Sbjct: 55 NWKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLS 114
Query: 91 RLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVI 150
RL+++ N L G IP + S+L + L +N + G +P+ L +L+ L L N +
Sbjct: 115 RLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNM 174
Query: 151 DGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIS 210
G +P+ +GNL+ L L L HNNL+ +IP+++ L + SL L NN SG+ PPA++N+S
Sbjct: 175 RGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLS 234
Query: 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270
++++L + N FSGRL +G LPN+ + N G+IP +L+N S L L + N+
Sbjct: 235 SLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENN 294
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
+G IP TFGN+ +L +L + TN+L ++SS FL+SLTNC +L L + N LGG
Sbjct: 295 LTGSIP-TFGNVPNLKLLFLHTNSLGSDSSR--DLEFLTSLTNCTQLETLGIGRNRLGGD 351
Query: 331 LPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390
LP I N SA L + + GSIP +IGNL L L LD N L+G +PTS+G L L
Sbjct: 352 LPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNL 411
Query: 391 QGLSLEDNNLEGSIPYDLCH------LELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS 444
+ LSL N L G IP + + L+L+ N G +P L + + L EL +G NKL
Sbjct: 412 RYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNG 471
Query: 445 SIPSSLWSLEYILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDL 504
+IP + ++ +L + + L+ L L L N+LSG +P T+G + +
Sbjct: 472 TIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTM 531
Query: 505 ETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564
E+L L N F G IP+ G L+ ++ +DLS N+ SG IP+ + S L+ N+S N LEG
Sbjct: 532 ESLFLEGNLFYGDIPDLKG-LVGVKEVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEG 590
Query: 565 EIPVKGSFKN 574
++PVKG F+N
Sbjct: 591 KVPVKGIFEN 600
|
|
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 214/550 (38%), Positives = 306/550 (55%)
Query: 31 SWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLG 90
SW G+ C +H+RV ++L G+ L G + P +GNLSFL SL++ N F+G +P+E+G L
Sbjct: 70 SWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLF 129
Query: 91 RLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVI 150
RL++++ S N G IP + S L + L +N++ +P +LSKL +L N +
Sbjct: 130 RLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNL 189
Query: 151 DGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIS 210
G P+ +GNL++L LD +N ++ +IP +I L+ + + N +G+ PP I+N+S
Sbjct: 190 TGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLS 249
Query: 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270
++ L++ N FSG L G LPN++ L + IN+ GTIP++L+N S L LD+ SN
Sbjct: 250 SLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNH 309
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
+G IP +FG L++L +L + N+L SS FL +LTNC +L YL + N LGG
Sbjct: 310 LTGKIPLSFGRLQNLLLLGLNNNSLGNYSSG--DLDFLGALTNCSQLQYLNVGFNKLGGQ 367
Query: 331 LPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390
LP I N S L + GSIP IGNL L L L N L G +P S+G L +L
Sbjct: 368 LPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSEL 427
Query: 391 QGLSLEDNNLEGSIPYDL------CHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS 444
+ + L N L G IP L +L L N G IP L S + L +L LG+NKL
Sbjct: 428 RKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNG 487
Query: 445 SIPSSLWSLEYILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDL 504
SIP L L ++ + + KLK L LD+S N+LSG IP T+ + L
Sbjct: 488 SIPHELMELPSLVVLNVSFNLLVGPLRQDIGKLKFLLALDVSYNKLSGQIPQTLANCLSL 547
Query: 505 ETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564
E L L N F GPIP+ G L L LDLS NN SG IP+ + S L+ N+S N +G
Sbjct: 548 EFLLLQGNSFVGPIPDIRG-LTGLRFLDLSKNNLSGTIPEYMANFSKLQNLNLSLNNFDG 606
Query: 565 EIPVKGSFKN 574
+P +G F+N
Sbjct: 607 AVPTEGVFRN 616
|
|
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 233/583 (39%), Positives = 321/583 (55%)
Query: 3 LISFTSNLFQSHLAIMLLYLLKTTNMRLSWVGISCDSRHQR----VKALNLSGMGLGGTI 58
L+SF S+L + + +WVG+ C R +R V L L L G I
Sbjct: 36 LLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLLRSSNLSGII 95
Query: 59 PPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQI 118
P LGNLSFL LD+ N G +P EL +L RL+ + S N + GSIP IG +KL
Sbjct: 96 SPSLGNLSFLRELDLGDNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAAIGACTKLTS 155
Query: 119 MSLRNNNITGPIPNSL-FNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ 177
+ L +N + G IP + +L L L N + G IPS +GNL++L + DL N L
Sbjct: 156 LDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNRLSGA 215
Query: 178 IPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNI 237
IP+ +G L +L ++ LG NNLSG+IP +I+N+S++R ++ N+ G +P+ +L +
Sbjct: 216 IPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKTLHLL 275
Query: 238 EYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTT 297
E + + N G IP S+ NAS L + + N FSG I + FG LR+L L + N T
Sbjct: 276 EVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQT 335
Query: 298 ESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYEC-KLGGSI 356
D W F+S LTNC KL L L N LGG+LP N S SL SF A E K+ GSI
Sbjct: 336 REQ--DDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSL-SFLALELNKITGSI 392
Query: 357 PKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHL-ELN- 414
PK+IGNL GL L L N+ G++P+S+G L+ L L +NNL GSIP + +L ELN
Sbjct: 393 PKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNI 452
Query: 415 ---G-NKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYI-LEIXXXXXXXXXX 469
G NK SG IP L++LT+L L L +N L+ IPS L++++ + + I
Sbjct: 453 LLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGS 512
Query: 470 XXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLE 529
+ LK L N+LSG IP+T+G L L L +N G IP ++G L LE
Sbjct: 513 IPQEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLE 572
Query: 530 SLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSF 572
+LDLS NN SG+IP SL ++ L N+S N GE+P G+F
Sbjct: 573 TLDLSSNNLSGQIPTSLADITMLHSLNLSFNSFVGEVPTIGAF 615
|
|
| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 212/550 (38%), Positives = 300/550 (54%)
Query: 31 SWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLG 90
SW + C +H+RV L+L G+ LGG I P +GNLSFL+ LD++ N+F G +P E+G L
Sbjct: 55 SWKWVRCGRKHKRVTRLDLGGLQLGGVISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLF 114
Query: 91 RLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVI 150
RLK+++ FN L G IP + S+L + L +NN+ +P+ L +L KL L N +
Sbjct: 115 RLKYLAVGFNYLEGEIPASLSNCSRLLYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDL 174
Query: 151 DGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIS 210
G P I NL++L L+L +N+L+ +IP +I L + SL L NN SG+ PPA +N+S
Sbjct: 175 KGKFPVFIRNLTSLIVLNLGYNHLEGEIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLS 234
Query: 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270
++ L L N FSG L G+ LPNI L+L N L G IP +L N S L +G N
Sbjct: 235 SLENLYLLGNGFSGNLKPDFGNLLPNIHELSLHGNFLTGAIPTTLANISTLEMFGIGKNR 294
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
+G I FG L +L+ L + N+L S S +FL +LTNC L L + N LGG
Sbjct: 295 MTGSISPNFGKLENLHYLELANNSLG--SYSFGDLAFLDALTNCSHLHGLSVSYNRLGGA 352
Query: 331 LPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390
LP I N S L + GSIP +IGNL GL L L N L G +PTS+G L L
Sbjct: 353 LPTSIVNMSTELTVLNLKGNLIYGSIPHDIGNLIGLQSLLLADNLLTGPLPTSLGNLVGL 412
Query: 391 QGLSLEDNNLEGSIPY------DLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS 444
L L N G IP L L L+ N G +PP L + + +L++G NKL
Sbjct: 413 GELILFSNRFSGEIPSFIGNLTQLVKLYLSNNSFEGIVPPSLGDCSHMLDLQIGYNKLNG 472
Query: 445 SIPSSLWSLEYILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDL 504
+IP + + ++ + + +L+ L L L N LSG++P T+G + +
Sbjct: 473 TIPKEIMQIPTLVHLNMESNSLSGSLPNDIGRLQNLVELLLGNNNLSGHLPQTLGKCLSM 532
Query: 505 ETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564
E + L N F G IP+ G L+ ++++DLS NN SG I + E S L+ N+S N EG
Sbjct: 533 EVIYLQENHFDGTIPDIKG-LMGVKNVDLSNNNLSGSISEYFENFSKLEYLNLSDNNFEG 591
Query: 565 EIPVKGSFKN 574
+P +G F+N
Sbjct: 592 RVPTEGIFQN 601
|
|
| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 202/550 (36%), Positives = 297/550 (54%)
Query: 31 SWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLG 90
+W ++C +H+RV LNL G+ LGG + P +GN+SFL+SLD++ N F G +P E+G L
Sbjct: 55 NWKWVTCGRKHKRVTHLNLGGLQLGGIVSPSIGNVSFLISLDLSDNAFGGIIPREVGNLF 114
Query: 91 RLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVI 150
RL+ + +FN L G IP + S+L + L +N + +P+ L +L+KL +L N +
Sbjct: 115 RLEHLYMAFNSLEGGIPATLSNCSRLLNLDLYSNPLRQGVPSELGSLTKLVILDLGRNNL 174
Query: 151 DGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIS 210
G +P +GNL++L L NN++ ++P E+ L + L L N G+ PPAI+N+S
Sbjct: 175 KGKLPRSLGNLTSLKSLGFTDNNIEGEVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLS 234
Query: 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270
+ L L + FSG L G+ LPNI L L N+L+G IP +L+N S L + N
Sbjct: 235 ALEDLFLFGSGFSGSLKPDFGNLLPNIRELNLGENDLVGAIPTTLSNISTLQKFGINKNM 294
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
+G I FG + L L + N L S + F+ SLTNC L L + LGG
Sbjct: 295 MTGGIYPNFGKVPSLQYLDLSENPLG--SYTFGDLEFIDSLTNCTHLQLLSVGYTRLGGA 352
Query: 331 LPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390
LP I N S L S GSIP++IGNL GL L L N L G +PTS+G L +L
Sbjct: 353 LPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIGLQRLQLGKNMLTGPLPTSLGKLLRL 412
Query: 391 QGLSLEDNNLEGSIPY---DLCHLE---LNGNKLSGHIPPCLASLTSLRELRLGSNKLTS 444
LSL N + G IP +L LE L+ N G +PP L + + +LR+G NKL
Sbjct: 413 GLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSFEGIVPPSLGKCSHMLDLRIGYNKLNG 472
Query: 445 SIPSSLWSLEYILEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDL 504
+IP + + ++ + + L+ L L L N+ SG++P T+G + +
Sbjct: 473 TIPKEIMQIPTLVNLSMEGNSLSGSLPNDIGSLQNLVKLSLENNKFSGHLPQTLGNCLAM 532
Query: 505 ETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564
E L L N F G IP ++ L+ + +DLS N+ SG IP+ S L+ N+S N G
Sbjct: 533 EQLFLQGNSFDGAIP-NIRGLMGVRRVDLSNNDLSGSIPEYFANFSKLEYLNLSINNFTG 591
Query: 565 EIPVKGSFKN 574
++P KG+F+N
Sbjct: 592 KVPSKGNFQN 601
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| UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
Identities = 190/514 (36%), Positives = 283/514 (55%)
Query: 68 LMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNIT 127
++ L + +N G + LG L L+ + S N LSG IP + LS+LQ + L N+++
Sbjct: 80 VVKLRLRSSNLAGIISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLS 139
Query: 128 GPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQN 187
G IP +L NL+ L +L+ + N + G IPS +G L+ L DL L N L IP+ G L+
Sbjct: 140 GEIPAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRR 199
Query: 188 LESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL 247
L L+L NNLSG IP I+NIS++ + + SN+ SG LP+ +LP+++ + + N
Sbjct: 200 LSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQF 259
Query: 248 IGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSF 307
G IP S+ NAS + +G NSFSG +P G +R+L L + +E+ + W F
Sbjct: 260 HGRIPASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPET--LSEAEETNDWKF 317
Query: 308 LSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLI 367
+++LTNC L + L GG+LP + N S+SL S + K+ GS+P++IGNL L
Sbjct: 318 MTALTNCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQ 377
Query: 368 LLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY------DLCHLELNGNKLSGH 421
L+L N L G++P+S L+ L+ L++++N L GS+P L ++E+ N G
Sbjct: 378 YLSLANNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAFGGT 437
Query: 422 IPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIXXXXXXXXXXXX-XXVQKLKVL 480
IP L +LT L ++ LG N IP ++S+ + EI + KLK +
Sbjct: 438 IPSTLGNLTKLFQINLGHNNFIGQIPIEIFSIPALSEILDVSHNNLEGSIPKEIGKLKNI 497
Query: 481 RVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540
N+LSG PSTIG L+ L L +N G IP ++ L L++LDLSGNN SG
Sbjct: 498 VEFHADSNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNNLSG 557
Query: 541 KIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
+IP SL + L N+S N GE+P G F N
Sbjct: 558 QIPMSLGDMPLLHSLNLSFNSFHGEVPTNGVFAN 591
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| TAIR|locus:2131518 AT4G26540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 197/538 (36%), Positives = 295/538 (54%)
Query: 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGS 105
+L LS + L G IP +G+ + L LD++ N+ G +P E+ +L +LK +S + N L G
Sbjct: 97 SLTLSSLNLTGVIPKEIGDFTELELLDLSDNSLSGDIPVEIFRLKKLKTLSLNTNNLEGH 156
Query: 106 IPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNV-IDGNIPSGIGNLSNL 164
IP IG LS L + L +N ++G IP S+ L L++L+A N + G +P IGN NL
Sbjct: 157 IPMEIGNLSGLVELMLFDNKLSGEIPRSIGELKNLQVLRAGGNKNLRGELPWEIGNCENL 216
Query: 165 FDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224
L L +L ++P IGNL+ ++++A+ T+ LSG IP I + ++ L L+ N SG
Sbjct: 217 VMLGLAETSLSGKLPASIGNLKRVQTIAIYTSLLSGPIPDEIGYCTELQNLYLYQNSISG 276
Query: 225 RLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRH 284
+P+TIG L ++ L L NNL+G IP L N +L +D N +G IP +FG L +
Sbjct: 277 SIPTTIG-GLKKLQSLLLWQNNLVGKIPTELGNCPELWLIDFSENLLTGTIPRSFGKLEN 335
Query: 285 LNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQS 344
L L + N + S + + LTNC KL++L +D+N + G +P L+ N SL
Sbjct: 336 LQELQLSVNQI---SGTIPE-----ELTNCTKLTHLEIDNNLITGEIPSLMSNLR-SLTM 386
Query: 345 FYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSI 404
F+A++ KL G+IP+ + R L + L +N L+G+IP + L+ L L L N+L G I
Sbjct: 387 FFAWQNKLTGNIPQSLSQCRELQAIDLSYNSLSGSIPKEIFGLRNLTKLLLLSNDLSGFI 446
Query: 405 PYDL--C----HLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILE 458
P D+ C L LNGN+L+G IP + +L +L + + N+L SIP ++ E LE
Sbjct: 447 PPDIGNCTNLYRLRLNGNRLAGSIPSEIGNLKNLNFVDISENRLVGSIPPAISGCES-LE 505
Query: 459 IXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI 518
K L+ +D S N LS +P IG L +L L+LA N+ G I
Sbjct: 506 FLDLHTNSLSGSLLGTTLPKSLKFIDFSDNALSSTLPPGIGLLTELTKLNLAKNRLSGEI 565
Query: 519 PESVGSLISLESLDLSGNNFSGKIPKSLEALSHLK-QFNVSQNMLEGEIPVKGS-FKN 574
P + + SL+ L+L N+FSG+IP L + L N+S N GEIP + S KN
Sbjct: 566 PREISTCRSLQLLNLGENDFSGEIPDELGQIPSLAISLNLSCNRFVGEIPSRFSDLKN 623
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| TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 2.8e-78, P = 2.8e-78
Identities = 202/540 (37%), Positives = 285/540 (52%)
Query: 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNEL-GKLGRLKFISFSFNKL 102
++ L+LS L G I ++ L L + N G LP + LK + S +L
Sbjct: 290 LQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQL 349
Query: 103 SGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLS 162
SG IP I L+++ L NN +TG IP+SLF L +L L + N ++G + S I NL+
Sbjct: 350 SGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLT 409
Query: 163 NLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222
NL + L HNNL+ ++P EIG L LE + L N SG +P I N + ++ ++ + N+
Sbjct: 410 NLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRL 469
Query: 223 SGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL 282
SG +PS+IG L ++ L L N L+G IP SL N ++ +DL N SG IP++FG L
Sbjct: 470 SGEIPSSIGR-LKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFL 528
Query: 283 RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASL 342
L + I N+L Q + SL N + L+ + SN G + PL G S+S
Sbjct: 529 TALELFMIYNNSL--------QGNLPDSLINLKNLTRINFSSNKFNGSISPLCG--SSSY 578
Query: 343 QSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG 402
SF E G IP E+G L L L N G IP + G + +L L + N+L G
Sbjct: 579 LSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSG 638
Query: 403 SIPYDL--C----HLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYI 456
IP +L C H++LN N LSG IP L L L EL+L SNK S+P+ ++SL I
Sbjct: 639 IIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNI 698
Query: 457 LEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG 516
L + + L+ L L+L NQLSG +PSTIG L L L L+ N G
Sbjct: 699 LTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTG 758
Query: 517 PIPESVGSLISLES-LDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVK-GSFKN 574
IP +G L L+S LDLS NNF+G+IP ++ L L+ ++S N L GE+P + G K+
Sbjct: 759 EIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKS 818
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| TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 789 (282.8 bits), Expect = 9.8e-78, P = 9.8e-78
Identities = 197/532 (37%), Positives = 284/532 (53%)
Query: 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNEL-GKLGRLKFISFSFNKL 102
++ L+LS L G IP N+S L+ L + N+ G LP + L+ + S +L
Sbjct: 289 LQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQL 348
Query: 103 SGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLS 162
SG IP + L+ + L NN++ G IP +LF L +L L N ++G + I NL+
Sbjct: 349 SGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLT 408
Query: 163 NLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222
NL L L HNNL+ ++P EI L+ LE L L N SG IP I N ++++++++ N F
Sbjct: 409 NLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHF 468
Query: 223 SGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL 282
G +P +IG L + L L N L+G +P SL N +L LDL N SG IP++FG L
Sbjct: 469 EGEIPPSIGR-LKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFL 527
Query: 283 RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASL 342
+ L L + N+L Q + SL + R L+ + L N L G + PL G S+S
Sbjct: 528 KGLEQLMLYNNSL--------QGNLPDSLISLRNLTRINLSHNRLNGTIHPLCG--SSSY 577
Query: 343 QSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG 402
SF IP E+GN + L L L N L G IP ++G +++L L + N L G
Sbjct: 578 LSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTG 637
Query: 403 SIPYDL--C----HLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYI 456
+IP L C H++LN N LSG IPP L L+ L EL+L SN+ S+P+ L++ +
Sbjct: 638 TIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKL 697
Query: 457 LEIXXXXXXXXXXXXXXVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG 516
L + + L L VL+L +NQ SG++P +G L L L L+ N G
Sbjct: 698 LVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTG 757
Query: 517 PIPESVGSLISLES-LDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIP 567
IP +G L L+S LDLS NNF+G IP ++ LS L+ ++S N L GE+P
Sbjct: 758 EIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVP 809
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00025217001 | SubName- Full=Chromosome chr9 scaffold_33, whole genome shotgun sequence; (2202 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 574 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-81 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-80 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-44 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-17 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-15 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 8e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 1e-04 | |
| PRK15387 | 788 | PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss | 2e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.003 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.003 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 272 bits (698), Expect = 6e-81
Identities = 195/558 (34%), Positives = 302/558 (54%), Gaps = 27/558 (4%)
Query: 25 TTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPN 84
++ W GI+C++ RV +++LSG + G I + L ++ +++++ N G +P+
Sbjct: 53 SSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD 111
Query: 85 ELGKLG-RLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEML 143
++ L++++ S N +GSIP G + L+ + L NN ++G IPN + + S L++L
Sbjct: 112 DIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169
Query: 144 QASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIP 203
NV+ G IP+ + NL++L L L N L QIP E+G +++L+ + LG NNLSG IP
Sbjct: 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229
Query: 204 PAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIG 263
I ++++ L+L N +G +PS++G +L N++YL L N L G IP S+ + KLI
Sbjct: 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288
Query: 264 LDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLD 323
LDL NS SG IP L++L +L + +NN T + A L+SL +L L L
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-----LTSLP---RLQVLQLW 340
Query: 324 SNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEI---GNLRGLILLTLDFNDLNGTI 380
SN G +P +G + +L L G IP+ + GNL LIL + N L G I
Sbjct: 341 SNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS---NSLEGEI 396
Query: 381 PTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLEL------NGNKLSGHIPPCLASLTSLRE 434
P S+G + L+ + L+DN+ G +P + L L + N L G I + SL+
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456
Query: 435 LRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNI 494
L L NK +P S S + + ++LS N + ++P + L L L LS N+LSG I
Sbjct: 457 LSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515
Query: 495 PSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQ 554
P + + L +L L+ NQ G IP S + L LDLS N SG+IPK+L + L Q
Sbjct: 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575
Query: 555 FNVSQNMLEGEIPVKGSF 572
N+S N L G +P G+F
Sbjct: 576 VNISHNHLHGSLPSTGAF 593
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Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 270 bits (692), Expect = 4e-80
Identities = 178/496 (35%), Positives = 268/496 (54%), Gaps = 18/496 (3%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106
LNLS G+IP G++ L +LD++ N G +PN++G LK + N L G I
Sbjct: 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180
Query: 107 PTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFD 166
P + L+ L+ ++L +N + G IP L + L+ + +N + G IP IG L++L
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRL 226
LDL +NNL IP+ +GNL+NL+ L L N LSG IPP+IF++ + L+L N SG +
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300
Query: 227 PSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLN 286
P + L N+E L L NN G IP +LT+ +L L L SN FSG IP G +L
Sbjct: 301 PELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359
Query: 287 VLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFY 346
VL + TNNLT E L + L L+L SN L G +P +G SL+
Sbjct: 360 VLDLSTNNLTGE--------IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR-SLRRVR 410
Query: 347 AYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP- 405
+ G +P E L + L + N+L G I + + LQ LSL N G +P
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470
Query: 406 ----YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINL 461
L +L+L+ N+ SG +P L SL+ L +L+L NKL+ IP L S + ++ ++L
Sbjct: 471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530
Query: 462 SSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPES 521
S N L+ +P++ ++ VL LDLS+NQLSG IP +G + L ++++ N G +P S
Sbjct: 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP-S 589
Query: 522 VGSLISLESLDLSGNN 537
G+ +++ + ++GN
Sbjct: 590 TGAFLAINASAVAGNI 605
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Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 3e-44
Identities = 130/408 (31%), Positives = 190/408 (46%), Gaps = 57/408 (13%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106
L+L L G IP LGNL L L + N G +P + L +L + S N LSG I
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300
Query: 107 PTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFD 166
P + L L+I+ L +NN TG IP +L +L +L++LQ N G IP +G +NL
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRL 226
LDL NNL +IP + + NL L L +N+L G IP ++ ++R + L N FSG L
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420
Query: 227 PS-----------------------TIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIG 263
PS + +P+++ L+LA N G +PDS + +L
Sbjct: 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLEN 479
Query: 264 LDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLD 323
LDL N FSG +P G+L L L + N L+ E L++C+KL L L
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE--------IPDELSSCKKLVSLDLS 531
Query: 324 SNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTS 383
N +L G IP + L L L N L+G IP +
Sbjct: 532 HN-------------------------QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566
Query: 384 VGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTS 431
+G ++ L +++ N+L GS+P L +N + ++G+I C TS
Sbjct: 567 LGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTS 614
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 4e-17
Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 459 INLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI 518
+ L + L +P+++ KL+ L+ ++LS N + GNIP ++G++ LE L L+ N F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 519 PESVGSLISLESLDLSGNNFSGKIPKSLEA-LSHLKQFNVSQN 560
PES+G L SL L+L+GN+ SG++P +L L H FN + N
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 4e-15
Identities = 38/85 (44%), Positives = 55/85 (64%)
Query: 483 LDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKI 542
L L L G IP+ I L L++++L+ N +G IP S+GS+ SLE LDLS N+F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 543 PKSLEALSHLKQFNVSQNMLEGEIP 567
P+SL L+ L+ N++ N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 32 WVGISC----DSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELG 87
W G C + L L GL G IP + L L S++++ N+ G++P LG
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463
Query: 88 KLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASF 147
+ L+ + S+N +GSIP +G L+ L+I++L N+++G +P + L + +ASF
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA---LGGRLLHRASF 520
Query: 148 NVIDGNIPSGIGNL 161
N D GI L
Sbjct: 521 NFTDNAGLCGIPGL 534
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 8e-12
Identities = 34/88 (38%), Positives = 51/88 (57%)
Query: 119 MSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQI 178
+ L N + G IPN + L L+ + S N I GNIP +G++++L LDL +N+ I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 179 PTEIGNLQNLESLALGTNNLSGLIPPAI 206
P +G L +L L L N+LSG +P A+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-11
Identities = 29/80 (36%), Positives = 53/80 (66%)
Query: 152 GNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIST 211
G IP+ I L +L ++L N+++ IP +G++ +LE L L N+ +G IP ++ +++
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 212 IRVLNLHSNQFSGRLPSTIG 231
+R+LNL+ N SGR+P+ +G
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 32/89 (35%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRL 226
L L + L+ IP +I L++L+S+ L N++ G IPP++ +I+++ VL+L N F+G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 227 PSTIGHSLPNIEYLTLAINNLIGTIPDSL 255
P ++G L ++ L L N+L G +P +L
Sbjct: 483 PESLGQ-LTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 102 LSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNL 161
L G IP I L LQ ++L N+I G IP SL +++ LE+L S+N +G+IP +G L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489
Query: 162 SNLFDLDLRHNNLQDQIPTEIG 183
++L L+L N+L ++P +G
Sbjct: 490 TSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 33/91 (36%), Positives = 54/91 (59%)
Query: 411 LELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSL 470
L L+ L G IP ++ L L+ + L N + +IP SL S+ + ++LS NS N S+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 471 PSNVQKLKVLRVLDLSRNQLSGNIPSTIGAL 501
P ++ +L LR+L+L+ N LSG +P+ +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 320 LVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGT 379
L LD+ L G +P I LQS + G+IP +G++ L +L L +N NG+
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 380 IPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRE 434
IP S+G L L+ L+L N+L G +P L L+ + L + LR
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRA 536
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 212 IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSF 271
I L L + G +P+ I L +++ + L+ N++ G IP SL + + L LDL NSF
Sbjct: 420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 272 SGHIPNTFGNLRHLNVLSIRTNNLTTESSSA 302
+G IP + G L L +L++ N+L+ +A
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 8e-08
Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 8/207 (3%)
Query: 58 IPPHLGNL-SFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKL 116
IPP +G L S L LD++ +N LP+ L L LK + SFN LS +P + LS L
Sbjct: 131 IPPLIGLLKSNLKELDLS-DNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188
Query: 117 QIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQD 176
+ L N I+ +P + LS LE L S N I + S + NL NL L+L +N L+D
Sbjct: 189 NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED 246
Query: 177 QIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPN 236
+P IGNL NLE+L L N +S ++ +++ +R L+L N S LP L
Sbjct: 247 -LPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLL 303
Query: 237 IEYLTLAINNLIGTIPDSLTNASKLIG 263
L L + + + + I
Sbjct: 304 ELLLNLLLTLKALELKLNSILLNNNIL 330
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 9e-08
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 192 ALGTNN--LSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIG 249
LG +N L G IP I + ++ +NL N G +P ++G S+ ++E L L+ N+ G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNG 480
Query: 250 TIPDSLTNASKLIGLDLGSNSFSGHIPNTFG 280
+IP+SL + L L+L NS SG +P G
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 71/259 (27%), Positives = 108/259 (41%), Gaps = 7/259 (2%)
Query: 119 MSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQI 178
N N + L L+ L L N I P SNL +LDL N ++ +
Sbjct: 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SL 155
Query: 179 PTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIE 238
P+ + NL NL++L L N+LS +P + N+S + L+L N+ S LP I L +E
Sbjct: 156 PSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALE 212
Query: 239 YLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTE 298
L L+ NN I + SL+N L GL+L +N +P + GNL +L L + +NN +
Sbjct: 213 ELDLS-NNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDL-SNNQISS 269
Query: 299 SSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPK 358
SS + L L L L +L L+ N +L++ + +
Sbjct: 270 ISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNI 329
Query: 359 EIGNLRGLILLTLDFNDLN 377
LN
Sbjct: 330 LSNGETSSPEALSILESLN 348
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 10/199 (5%)
Query: 373 FNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCH-----LELNGNKLSGHIPPCLA 427
++ +P+S+ L L LS + L L+LN N+L +I L
Sbjct: 55 SSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLE 114
Query: 428 SLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSR 487
LT+L L L +N +T P + E++LS N + LPS ++ L L+ LDLS
Sbjct: 115 -LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF 172
Query: 488 NQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLE 547
N LS ++P + L +L L L+ N+ +P + L +LE LDLS NN ++ SL
Sbjct: 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS-NNSIIELLSSLS 229
Query: 548 ALSHLKQFNVSQNMLEGEI 566
L +L +S N LE
Sbjct: 230 NLKNLSGLELSNNKLEDLP 248
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 72/195 (36%), Positives = 108/195 (55%), Gaps = 13/195 (6%)
Query: 359 EIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCH------LE 412
E+ L L L LD N++ P L+ L L DN +E S+P L + L+
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLD 169
Query: 413 LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPS 472
L+ N LS +P L++L++L L L NK+ S +P + L + E++LS+NS+ L S
Sbjct: 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSII-ELLS 226
Query: 473 NVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLD 532
++ LK L L+LS N+L ++P +IG L +LETL L++NQ S+GSL +L LD
Sbjct: 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELD 283
Query: 533 LSGNNFSGKIPKSLE 547
LSGN+ S +P
Sbjct: 284 LSGNSLSNALPLIAL 298
|
Length = 394 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 75/297 (25%), Positives = 107/297 (36%), Gaps = 66/297 (22%)
Query: 282 LRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSAS 341
L L VL + N L E++ A S+L L L L N G I L
Sbjct: 22 LLCLQVLRLEGNTLGEEAAKA----LASALRPQPSLKELCLSLNETGRIPRGL------- 70
Query: 342 LQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQ---LQGLSLEDN 398
S+ + + GL L L N L + +L + LQ L L +N
Sbjct: 71 ------------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN 118
Query: 399 NLEGSI-----------PYDLCHLELNGNKLSGHIPPCLASL----TSLRELRLGSNKLT 443
L P L L L N+L G LA L+EL L +N +
Sbjct: 119 GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178
Query: 444 SS-IPS---SLWSLEYILEINLSSNSLND----SLPSNVQKLKVLRVLDLSRNQLSGNIP 495
+ I + L + + ++L++N L D +L + LK L VL+L N L+
Sbjct: 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238
Query: 496 STI-----GALVDLETLSLASN--------QFQGPIPESVGSLISLESLDLSGNNFS 539
+ + + L TLSL+ N + E SL LDL GN F
Sbjct: 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE----SLLELDLRGNKFG 291
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (103), Expect = 2e-04
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 23/175 (13%)
Query: 390 LQGLSLEDNNLEG--SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS--S 445
LQ LS+ DN L ++P +LC L N+L+ P L S L+EL + N+L S +
Sbjct: 304 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSL--PTLPS--GLQELSVSDNQLASLPT 359
Query: 446 IPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKV-------LRVL--DLSRNQLSGNIPS 496
+PS L+ L N SL +LPS +++L V L VL +L +SGN +
Sbjct: 360 LPSELYKL---WAYNNRLTSL-PALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT 415
Query: 497 TIGALVD-LETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALS 550
++ L L +LS+ NQ +PES+ L S +++L GN S + ++L ++
Sbjct: 416 SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 469
|
Length = 788 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.003
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 115 KLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNL 174
L+ + L NN +T + L L++L S N + P L +L LDL NNL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.003
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 480 LRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNF 538
L+ LDLS N+L+ L +L+ L L+ N PE+ L SL SLDLSGNN
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 574 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.98 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.95 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.88 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.88 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.81 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.76 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.72 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.7 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.69 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.66 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.59 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.56 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.46 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.38 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.26 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.23 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.21 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.16 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.15 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.13 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.11 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.05 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.05 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.02 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.99 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.96 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.88 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.87 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.86 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.85 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.64 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.62 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.56 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.49 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.43 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.37 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.37 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.32 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.22 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.2 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.15 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 98.13 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.1 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.09 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.05 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 98.03 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.97 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.95 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.74 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.72 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.66 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.58 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.42 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.31 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.29 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.19 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.04 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.84 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 95.63 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.58 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.87 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.56 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.42 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 93.68 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.19 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 88.46 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 88.36 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 87.62 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 87.34 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 86.3 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 86.3 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=521.59 Aligned_cols=540 Identities=35% Similarity=0.582 Sum_probs=497.3
Q ss_pred cccccCCCCccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchh-hcCCCCCCEEEcc
Q 036593 20 LYLLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNE-LGKLGRLKFISFS 98 (574)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~l~ 98 (574)
++.|....++|.|.|+.|.. ..+++.|+++++.+.+.++..|..+++|++|+|++|.+.+.+|.. +..+.+|++|+++
T Consensus 48 ~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls 126 (968)
T PLN00113 48 LSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126 (968)
T ss_pred CCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECc
Confidence 56798888999999999975 468999999999999999999999999999999999998888865 4599999999999
Q ss_pred CCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCC
Q 036593 99 FNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQI 178 (574)
Q Consensus 99 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 178 (574)
+|++.+..|. +.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+....
T Consensus 127 ~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 204 (968)
T PLN00113 127 NNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204 (968)
T ss_pred CCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC
Confidence 9999877774 56899999999999998788989999999999999999998889999999999999999999998888
Q ss_pred CccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCC
Q 036593 179 PTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNA 258 (574)
Q Consensus 179 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 258 (574)
+..+.++++|++|++++|.+....|..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|.+....+..+..+
T Consensus 205 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l 283 (968)
T PLN00113 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSL 283 (968)
T ss_pred ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhc
Confidence 99999999999999999999988999999999999999999999888888776 89999999999999988888888999
Q ss_pred CCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhh
Q 036593 259 SKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF 338 (574)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 338 (574)
++|++|++++|.+.+..|..+.++++|+.|++++|.+... .+..+..+++|+.|++++|.+.+..+..++..
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK--------IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc--------CChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 9999999999999888898999999999999999988764 23447889999999999999998888877776
Q ss_pred ccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCC------CCceEE
Q 036593 339 SASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY------DLCHLE 412 (574)
Q Consensus 339 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------~l~~l~ 412 (574)
. +++.+++++|.+....|..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|++++..|. .++.++
T Consensus 356 ~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 356 N-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred C-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 4 899999999999988999899999999999999999999999999999999999999999987764 577999
Q ss_pred ccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccc
Q 036593 413 LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSG 492 (574)
Q Consensus 413 l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 492 (574)
+++|.+++..+..+..+++|+.|++++|++.+..+..+ ..++|++|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence 99999999888888899999999999999987777665 46899999999999998889889999999999999999998
Q ss_pred cCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCCCCC
Q 036593 493 NIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSF 572 (574)
Q Consensus 493 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~~~~ 572 (574)
..|..+.++++|++|+|++|.+++..|..+..+++|+.|++++|++...+|..+..+++|+.+++++|++++.+|..+.|
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 593 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred C
Q 036593 573 K 573 (574)
Q Consensus 573 ~ 573 (574)
.
T Consensus 594 ~ 594 (968)
T PLN00113 594 L 594 (968)
T ss_pred c
Confidence 4
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=464.00 Aligned_cols=508 Identities=35% Similarity=0.541 Sum_probs=462.1
Q ss_pred CCCcEEEEEcCCCCCccccCCCc-cCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCE
Q 036593 40 RHQRVKALNLSGMGLGGTIPPHL-GNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQI 118 (574)
Q Consensus 40 ~~~~~~~l~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 118 (574)
..+.+++|++++|.+.+.+|..+ ..+++|++|++++|.+.+.+|. ..+++|++|++++|.+.+..|..++++++|++
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 35789999999999988788665 4999999999999999877774 56899999999999999899999999999999
Q ss_pred EEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcc
Q 036593 119 MSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNL 198 (574)
Q Consensus 119 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 198 (574)
|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+....+..+.++++|++|++++|.+
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 99999999888899999999999999999999888999999999999999999999888899999999999999999999
Q ss_pred cccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCC
Q 036593 199 SGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNT 278 (574)
Q Consensus 199 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 278 (574)
.+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 988999999999999999999999888888776 7899999999999998888888999999999999999998888888
Q ss_pred ccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCc
Q 036593 279 FGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPK 358 (574)
Q Consensus 279 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 358 (574)
+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+....+..+.... +++.+.+.+|.+....|.
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~--------~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGE--------IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPK 398 (968)
T ss_pred HhcCCCCCEEECcCCCCcCc--------CChHHhCCCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCH
Confidence 99999999999999988754 344578899999999999999888787776654 899999999999999999
Q ss_pred cccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCC------CCCceEEccCCeeeecCCccCcCCCCC
Q 036593 359 EIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP------YDLCHLELNGNKLSGHIPPCLASLTSL 432 (574)
Q Consensus 359 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------~~l~~l~l~~~~l~~~~~~~~~~~~~L 432 (574)
.+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.+| ..++.+++++|.+.+..|..+ ..++|
T Consensus 399 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L 477 (968)
T PLN00113 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRL 477 (968)
T ss_pred HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccc
Confidence 99999999999999999998889999999999999999999998665 468899999999998888766 46899
Q ss_pred CeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCC
Q 036593 433 RELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASN 512 (574)
Q Consensus 433 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 512 (574)
+.|++++|++.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..++++++|+.|++++|
T Consensus 478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557 (968)
T ss_pred eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence 99999999999889999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred cccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCc
Q 036593 513 QFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNM 561 (574)
Q Consensus 513 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~ 561 (574)
++.+..|..+..+++|+.+++++|++.+.+|.. +.+.++....+.+|+
T Consensus 558 ~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 558 QLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred cccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 999999999999999999999999999877754 334455556666776
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=304.51 Aligned_cols=368 Identities=24% Similarity=0.282 Sum_probs=261.4
Q ss_pred CCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccC
Q 036593 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRH 171 (574)
Q Consensus 92 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 171 (574)
-+.|++++|++.++.+..|.++++|+.+++.+|.+. .+|.......+|+.|+|.+|.|.+.-.+.++-++.|+.||++.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 346888888888888888888888888888888877 6777666677788888888888766677788888888888888
Q ss_pred CcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecC
Q 036593 172 NNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTI 251 (574)
Q Consensus 172 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 251 (574)
|.++++....|..-.++++|++++|+|+......|..+.+|-.|.++.|+++ .+|...+++++.|+.|++..|.+....
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeeh
Confidence 8888777777877788888888888888887788888888888888888888 788777777888888888777776554
Q ss_pred CcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCC
Q 036593 252 PDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGIL 331 (574)
Q Consensus 252 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 331 (574)
...|.++++|+.|.+..|.+.......|..+.+++.|+++.|+++....
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~------------------------------- 286 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE------------------------------- 286 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-------------------------------
Confidence 5556666666666666666655555555555566666555555544321
Q ss_pred ChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceE
Q 036593 332 PPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHL 411 (574)
Q Consensus 332 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 411 (574)
..+.+++.|+.|++++|.+..+-.++++.+++|++|+|+.|+++.
T Consensus 287 --------------------------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~--------- 331 (873)
T KOG4194|consen 287 --------------------------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR--------- 331 (873)
T ss_pred --------------------------ccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc---------
Confidence 223455666666666666666666666666666666666666652
Q ss_pred EccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceec---CCccccCCCCCCEEeCCCC
Q 036593 412 ELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDS---LPSNVQKLKVLRVLDLSRN 488 (574)
Q Consensus 412 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~l~~L~~L~l~~n 488 (574)
..+..|..+..|++|+|++|.+......+|..+++|++|+|++|.+.-. ....|..+++|+.|++.+|
T Consensus 332 ---------l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 332 ---------LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred ---------CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 2234455666677777777776655556666677777777777766433 3345667777777777777
Q ss_pred cccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCc
Q 036593 489 QLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNN 537 (574)
Q Consensus 489 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 537 (574)
++..+...+|.+++.|+.|+|.+|.|....+.+|..+ .|++|.+..-.
T Consensus 403 qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 403 QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence 7776666777777777777777777777777777777 77777665433
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=298.78 Aligned_cols=367 Identities=26% Similarity=0.305 Sum_probs=278.6
Q ss_pred CCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEcc
Q 036593 115 KLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALG 194 (574)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 194 (574)
.-++|++++|.+.++.+..|.++++|+.+.+..|.++ .+|.......+|+.|++.+|.|..+..+.++.++.|++|+++
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 3456777777777666666777777777777777776 566644445567777777777766666666666666666666
Q ss_pred CCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeec
Q 036593 195 TNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGH 274 (574)
Q Consensus 195 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 274 (574)
.|.+.......|..- .++++|++++|.++......|..+.+|..|.++.|.++..
T Consensus 158 rN~is~i~~~sfp~~-------------------------~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAK-------------------------VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred hchhhcccCCCCCCC-------------------------CCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 666654433333333 4455555555555555555666666777777777777666
Q ss_pred CCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccc
Q 036593 275 IPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGG 354 (574)
Q Consensus 275 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 354 (574)
.+..|.++++|+.|++..|.+...... .|.++++|+.|.+..|.+...
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~l--------tFqgL~Sl~nlklqrN~I~kL------------------------ 260 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGL--------TFQGLPSLQNLKLQRNDISKL------------------------ 260 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhh--------hhcCchhhhhhhhhhcCcccc------------------------
Confidence 666677777777777777776654322 266666666666666654422
Q ss_pred cCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCe
Q 036593 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRE 434 (574)
Q Consensus 355 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~ 434 (574)
-...|..+.++++|++..|+++......+.++.+|+.|+++.|.|.. .-+..+..+++|++
T Consensus 261 -~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r------------------ih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 261 -DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR------------------IHIDSWSFTQKLKE 321 (873)
T ss_pred -cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe------------------eecchhhhccccee
Confidence 22457788889999999999988878888899999999999998874 34466788999999
Q ss_pred EECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCccccc---CcccccCCCCCCEeeCCC
Q 036593 435 LRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGN---IPSTIGALVDLETLSLAS 511 (574)
Q Consensus 435 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~ 511 (574)
|+|+.|.++...+..|..+..|++|+|++|.+.......|..+++|++||+++|.+... ....|.++++|+.|.+.+
T Consensus 322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG 401 (873)
T ss_pred EeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence 99999999988899999999999999999999888888899999999999999998633 345788899999999999
Q ss_pred CcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccC
Q 036593 512 NQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQ 559 (574)
Q Consensus 512 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~ 559 (574)
|++....-.+|..++.|++|+|.+|.+-.+-+.+|..| .|++|-+..
T Consensus 402 Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 402 NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 99997777899999999999999999998999999999 999998764
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=286.47 Aligned_cols=477 Identities=28% Similarity=0.402 Sum_probs=302.8
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEcc
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (574)
.+..++++.|.+. .+...+.++..+.+|++++|... ..|.+++.+..++.++.+.|++. .+|..+..+.+|+.++++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 3456777777776 34455777778888888888774 56777888888888888888877 777778888888888888
Q ss_pred CCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccC
Q 036593 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLI 202 (574)
Q Consensus 123 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 202 (574)
+|.+. ..++.++.+..++.++..+|.+. ..|.++..+.+|..+++.+|.+....++.+. ++.|+++++..|.+. .+
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cC
Confidence 88777 66777777888888888888776 6677777777777788777777654444444 777777777777665 56
Q ss_pred chhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCC
Q 036593 203 PPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL 282 (574)
Q Consensus 203 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 282 (574)
|..++.+.+|+.|++..|.+. .+| ++. .++.|+++.++.|.+.....+....++++..|++.+|+++ ..|..+.-+
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~-gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFP-GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCC-ccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence 666777777777777777776 666 333 6777777777777776444444557777777777777776 456666667
Q ss_pred CcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhcc-ccceEE-------ecccc---
Q 036593 283 RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSA-SLQSFY-------AYECK--- 351 (574)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~l~-------l~~~~--- 351 (574)
.+|.+|++++|.++.. +..++++ .|+.|.+.+|++..+-.+.+..... -++++. ++...
T Consensus 275 rsL~rLDlSNN~is~L---------p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 275 RSLERLDLSNNDISSL---------PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred hhhhhhcccCCccccC---------Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 7777777777777753 3346666 7777777777765433222211100 011110 00000
Q ss_pred cc-----ccCCccccCCCCCcEEECcCCCCcccCCcCcc--ccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCc
Q 036593 352 LG-----GSIPKEIGNLRGLILLTLDFNDLNGTIPTSVG--TLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPP 424 (574)
Q Consensus 352 ~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~ 424 (574)
.. ...........+.+.|+++.-+++......|. .-.-...++++.|++. .+|.
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-------------------elPk 405 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-------------------ELPK 405 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-------------------hhhh
Confidence 00 00001122334455555555555432222221 1112444455555444 4555
Q ss_pred cCcCCCCC-CeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCC
Q 036593 425 CLASLTSL-RELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVD 503 (574)
Q Consensus 425 ~~~~~~~L-~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 503 (574)
.+..+..+ +.+.+++|.+. ..+..+..+++|+.|++++|.+.+ +|..+.++-.|+.|+++.|.+. ..|.++-....
T Consensus 406 ~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~ 482 (565)
T KOG0472|consen 406 RLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT 482 (565)
T ss_pred hhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccc-cchHHHhhHHH
Confidence 44444333 33445555543 566666677777777777776643 4444556666777777777766 45666555566
Q ss_pred CCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccc
Q 036593 504 LETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563 (574)
Q Consensus 504 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~ 563 (574)
++.+-.++|++....+..+..+.+|+.||+.+|.+. .+|..+++|++|++|++++|+|.
T Consensus 483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 666666667777555566777777777777777776 56667777777777777777776
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-36 Score=275.08 Aligned_cols=481 Identities=28% Similarity=0.370 Sum_probs=366.8
Q ss_pred CCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEE
Q 036593 40 RHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIM 119 (574)
Q Consensus 40 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 119 (574)
....+.+++++.+.+. ..|+++..+..++.++.++|++. ++|..+...+.|+.++++.|.+. ..++.++.+..|..+
T Consensus 66 nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDL 142 (565)
T ss_pred cccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhh
Confidence 3467899999999998 57778999999999999999985 78999999999999999999988 788889999999999
Q ss_pred EccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCccc
Q 036593 120 SLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLS 199 (574)
Q Consensus 120 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 199 (574)
+-.+|++. ..|.++.++.++..+++..+.+. ..|...-+|+.|++|+...|.+. ..|..++.+.+|.-|++..|++.
T Consensus 143 ~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 143 DATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc
Confidence 99999998 88999999999999999999998 55555666999999999998776 67888999999999999999997
Q ss_pred ccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCc
Q 036593 200 GLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTF 279 (574)
Q Consensus 200 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 279 (574)
.+| .|.+|..|+++++..|++. .+|.+..++++++..||+++|.++ ..|+.+..+.+|+.|++++|.++ ..|..+
T Consensus 220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sL 294 (565)
T KOG0472|consen 220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSL 294 (565)
T ss_pred -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccc
Confidence 556 6899999999999999988 899999999999999999999998 45666778889999999999998 567789
Q ss_pred cCCCcCceEEccCCcccccCCCCccccccccccCCCC-CcEEEccCCCCCCCCC-h---h-h--hhhccccceEEecccc
Q 036593 280 GNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRK-LSYLVLDSNPLGGILP-P---L-I--GNFSASLQSFYAYECK 351 (574)
Q Consensus 280 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~-~---~-~--~~~~~~L~~l~l~~~~ 351 (574)
+++ +|+.|.+.+|++.++..........+.+.-+.+ .+.=.++...-+.... . + + .....+.+.+.+++-.
T Consensus 295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 999 999999999998765432211100000000000 0000111111000000 0 0 0 0011255666777766
Q ss_pred ccccCCccccCC--CCCcEEECcCCCCcccCCcCccccCCCC-eEeccCCcccccCCCCCceEEccCCeeeecCCccCcC
Q 036593 352 LGGSIPKEIGNL--RGLILLTLDFNDLNGTIPTSVGTLQQLQ-GLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLAS 428 (574)
Q Consensus 352 ~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~ 428 (574)
++.+....|..- .-...++++.|.+. .+|..+..+..+. .+.+++|.+. .+|..+..
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-------------------fv~~~l~~ 433 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-------------------FVPLELSQ 433 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-------------------cchHHHHh
Confidence 664433333222 23678889988887 4455554444433 3445555554 56677788
Q ss_pred CCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEee
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLS 508 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 508 (574)
+++|+.|++++|-+. .+|..++.+..|+.|+++.|.+. ..|.+...+..++.+-.++|++....++.++++.+|..|+
T Consensus 434 l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD 511 (565)
T ss_pred hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence 899999999999876 78888888999999999999875 5677777778888888888999877777789999999999
Q ss_pred CCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEe
Q 036593 509 LASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFN 556 (574)
Q Consensus 509 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~ 556 (574)
+.+|.+. .+|..++++++|++|+++||+|. ..+..+-..+....+.
T Consensus 512 L~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ 557 (565)
T KOG0472|consen 512 LQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILS 557 (565)
T ss_pred cCCCchh-hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHH
Confidence 9999998 78889999999999999999998 4344443334444333
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-33 Score=277.11 Aligned_cols=480 Identities=29% Similarity=0.346 Sum_probs=334.5
Q ss_pred EEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccC
Q 036593 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRN 123 (574)
Q Consensus 44 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 123 (574)
+..|+++.|.+.....+.+.++-+|++|++++|.+ +.+|..+..+++|+.|.++.|.+. ..|....++.+|+++.|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence 55566666655443344455566677777777766 356666777777777777777766 5566677777777777777
Q ss_pred CcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCc
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIP 203 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 203 (574)
|.+. ..|..+..+.+|+.|+++.|.+. ..|..+..++.+..+..++|... ..++... ++.+++..+.+....+
T Consensus 101 n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~~-ik~~~l~~n~l~~~~~ 173 (1081)
T KOG0618|consen 101 NRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI----QRLGQTS-IKKLDLRLNVLGGSFL 173 (1081)
T ss_pred chhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh----hhhcccc-chhhhhhhhhcccchh
Confidence 7665 67777777777777777777765 56666777777777777776111 1122222 6666776666665555
Q ss_pred hhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCC
Q 036593 204 PAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLR 283 (574)
Q Consensus 204 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 283 (574)
.....+++ .|++++|.+. ... ...+++|+.+....+++.... -..++++.|+.+.|.+...... ....
T Consensus 174 ~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~ 241 (1081)
T KOG0618|consen 174 IDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPL 241 (1081)
T ss_pred cchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccc
Confidence 55555555 5778777765 211 115667777776666654321 1345788888888877633221 2245
Q ss_pred cCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCC
Q 036593 284 HLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNL 363 (574)
Q Consensus 284 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l 363 (574)
+|++++++.+.++.. +..+..|.+|+.++..+|.++......+.. . +++.+.+..|++. -+|.....+
T Consensus 242 nl~~~dis~n~l~~l---------p~wi~~~~nle~l~~n~N~l~~lp~ri~~~-~-~L~~l~~~~nel~-yip~~le~~ 309 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNL---------PEWIGACANLEALNANHNRLVALPLRISRI-T-SLVSLSAAYNELE-YIPPFLEGL 309 (1081)
T ss_pred cceeeecchhhhhcc---------hHHHHhcccceEecccchhHHhhHHHHhhh-h-hHHHHHhhhhhhh-hCCCccccc
Confidence 788888888887764 345788888999998888885443332222 2 6777777777776 355556778
Q ss_pred CCCcEEECcCCCCcccCCcCccccCC-CCeEeccCCccccc------CCCCCceEEccCCeeeecCCccCcCCCCCCeEE
Q 036593 364 RGLILLTLDFNDLNGTIPTSVGTLQQ-LQGLSLEDNNLEGS------IPYDLCHLELNGNKLSGHIPPCLASLTSLRELR 436 (574)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~------~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~ 436 (574)
+.|++|++..|++.......+..... +..++.+.+++... ....++.|++.+|.++...-..+.++++|++|+
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 88999999988887544433333332 56666666665432 223577899999999987777788999999999
Q ss_pred CCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccc
Q 036593 437 LGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 437 l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
|++|++.......+.+++.|++|+|+||.+. .+|..+..++.|++|...+|++. ..| .+..++.|+.++++.|+++.
T Consensus 390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 390 LSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred ecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 9999998666678889999999999999996 45678889999999999999998 566 67889999999999999886
Q ss_pred c-CCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCC
Q 036593 517 P-IPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQN 560 (574)
Q Consensus 517 ~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n 560 (574)
. ++...+. ++|+.||++||.-.......|..+.++...++.-+
T Consensus 467 ~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 467 VTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 3 3444443 89999999999876666667777777777777665
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-32 Score=261.80 Aligned_cols=366 Identities=26% Similarity=0.401 Sum_probs=181.3
Q ss_pred CCCcEEEccCCccc-ccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceee
Q 036593 66 SFLMSLDVTLNNFY-GHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQ 144 (574)
Q Consensus 66 ~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 144 (574)
+-+|-+|+++|.+. +.+|.....+..++.|.|...++. .+|+.++.+.+|++|.+.+|++. .+-..++.++.||.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 34455566666655 345556666666666666555554 45555555666666666555554 3334455555555555
Q ss_pred cccccCc-ccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCccc
Q 036593 145 ASFNVID-GNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFS 223 (574)
Q Consensus 145 l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (574)
+.+|++. .-+|..+.++..|+.|++++|++. ..|..+...+++-.|++++|++.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------------------------EvP~~LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------------------------EVPTNLEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-------------------------hcchhhhhhcCcEEEEcccCccc
Confidence 5555442 123333444444555555444443 23333444444444444444444
Q ss_pred ccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCc
Q 036593 224 GRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSAD 303 (574)
Q Consensus 224 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 303 (574)
.+|..++.++..|-.|+++.|.+. ..|..+..+..|++|.+++|++...-...+..+..|+.|.+++.+-+-.
T Consensus 140 -tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~----- 212 (1255)
T KOG0444|consen 140 -TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD----- 212 (1255)
T ss_pred -cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh-----
Confidence 444444444444444555544443 2333444555555555555555433233334444444555544433221
Q ss_pred cccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcC
Q 036593 304 QWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTS 383 (574)
Q Consensus 304 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 383 (574)
.++.++..+.+|..++++.|.+. .+|..+..+++|+.|++++|.++.
T Consensus 213 --N~Ptsld~l~NL~dvDlS~N~Lp--------------------------~vPecly~l~~LrrLNLS~N~ite----- 259 (1255)
T KOG0444|consen 213 --NIPTSLDDLHNLRDVDLSENNLP--------------------------IVPECLYKLRNLRRLNLSGNKITE----- 259 (1255)
T ss_pred --cCCCchhhhhhhhhccccccCCC--------------------------cchHHHhhhhhhheeccCcCceee-----
Confidence 12233444444444444444433 233344444555555555555442
Q ss_pred ccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCC
Q 036593 384 VGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463 (574)
Q Consensus 384 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 463 (574)
+........+|+.|+++.|+++ .+|.++..++.|+.|.+.+
T Consensus 260 --------------------------------------L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 260 --------------------------------------LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred --------------------------------------eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhcc
Confidence 2222233344555555555554 4455555555555555555
Q ss_pred Ccceec-CCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 464 NSLNDS-LPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 464 ~~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
|.+.-. +|..++.+.+|+++..++|.+. ..|..+..|+.|+.|.|+.|++. ++|+++.-++.|+.||++.|+-.
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 554322 4455555555555555555555 45555555556666666655555 55555555555666666555443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-31 Score=252.72 Aligned_cols=387 Identities=26% Similarity=0.394 Sum_probs=288.5
Q ss_pred CCcEEEEEcCCCCCc-cccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEE
Q 036593 41 HQRVKALNLSGMGLG-GTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIM 119 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 119 (574)
.+-+|-+|+++|.++ +..|..+..++.++-|.|....+. .+|..++.+.+|++|++++|++. .+-..++.++.||.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 467899999999998 468888999999999999988874 78999999999999999999988 444568899999999
Q ss_pred EccCCcccc-cCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcc
Q 036593 120 SLRNNNITG-PIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNL 198 (574)
Q Consensus 120 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 198 (574)
.++.|++.. .+|..+..+..|..|++++|.+. ..|..+..-+++-+|++++|+|..+....|.+++.|-.|++++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 999998763 57888999999999999999998 7899999999999999999999877777788899999999999988
Q ss_pred cccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCcee-ecCCC
Q 036593 199 SGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFS-GHIPN 277 (574)
Q Consensus 199 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~ 277 (574)
. .+|..+..+.+|+.|++++|++. .+ -...+..++.|+.|.+++.+-+ ...|.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~-hf------------------------QLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLN-HF------------------------QLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhh-HH------------------------HHhcCccchhhhhhhcccccchhhcCCC
Confidence 6 56666788888888888888654 11 1111222333344444433211 23445
Q ss_pred CccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCC
Q 036593 278 TFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIP 357 (574)
Q Consensus 278 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 357 (574)
.+..+.+|..++++.|.+.. +++.+-.+++|+.|++++|.+++..
T Consensus 217 sld~l~NL~dvDlS~N~Lp~---------vPecly~l~~LrrLNLS~N~iteL~-------------------------- 261 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLPI---------VPECLYKLRNLRRLNLSGNKITELN-------------------------- 261 (1255)
T ss_pred chhhhhhhhhccccccCCCc---------chHHHhhhhhhheeccCcCceeeee--------------------------
Confidence 55555566666666555543 2333555556666666666555321
Q ss_pred ccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEEC
Q 036593 358 KEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRL 437 (574)
Q Consensus 358 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l 437 (574)
.......+|++|+++.|.++ .+|+++..+++|+.|++.+|+++-. .+|..++.+.+|+++..
T Consensus 262 ~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~Fe-----------------GiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 262 MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFE-----------------GIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccccc-----------------CCccchhhhhhhHHHHh
Confidence 11233467889999999988 7788888999999999998887743 56777888888999988
Q ss_pred CCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCC
Q 036593 438 GSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLAS 511 (574)
Q Consensus 438 ~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 511 (574)
.+|.+. ..|..+..|..|+.|.|++|.+. .+|+++.-++.|++||+..|.-.--.|..-..-++|+.-+|..
T Consensus 324 anN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 324 ANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred hccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecce
Confidence 888885 78888888888888888888875 4677777788888888887764423333222235566555543
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-31 Score=267.21 Aligned_cols=478 Identities=31% Similarity=0.367 Sum_probs=376.2
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCc
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNN 125 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 125 (574)
++|++...+. .+|..+-....+..|++++|.+...-...++++.+|+.|++++|.+. ..|..+..+.+|+.|+++.|.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence 3566777766 56666666666999999988775432445677778999999999887 788889999999999999998
Q ss_pred ccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchh
Q 036593 126 ITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPA 205 (574)
Q Consensus 126 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 205 (574)
+. ..|....++.+|+++.|..+... .+|..+..+++|++|+++.|.+. ..|..+..+..++.+..++|.-...
T Consensus 80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~---- 152 (1081)
T KOG0618|consen 80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR---- 152 (1081)
T ss_pred Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----
Confidence 87 77788889999999999999887 78999999999999999999876 5777888888888898988822212
Q ss_pred hcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcC
Q 036593 206 IFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHL 285 (574)
Q Consensus 206 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 285 (574)
++... ++++++..+.+.+.++.+.. .+.+ .+++++|.+. ...+..+++|+.+....|.+.... ...+++
T Consensus 153 lg~~~-ik~~~l~~n~l~~~~~~~i~-~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l 221 (1081)
T KOG0618|consen 153 LGQTS-IKKLDLRLNVLGGSFLIDIY-NLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSL 221 (1081)
T ss_pred hcccc-chhhhhhhhhcccchhcchh-hhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcch
Confidence 22222 78888888887777666554 3333 5999998876 234567788999998888876432 245789
Q ss_pred ceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCC
Q 036593 286 NVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRG 365 (574)
Q Consensus 286 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~ 365 (574)
+.|+.+.|.+..... -.-..+|++++++++++.... ++++.+. +++.+....+.+. .+|..+....+
T Consensus 222 ~~L~a~~n~l~~~~~----------~p~p~nl~~~dis~n~l~~lp-~wi~~~~-nle~l~~n~N~l~-~lp~ri~~~~~ 288 (1081)
T KOG0618|consen 222 TALYADHNPLTTLDV----------HPVPLNLQYLDISHNNLSNLP-EWIGACA-NLEALNANHNRLV-ALPLRISRITS 288 (1081)
T ss_pred heeeeccCcceeecc----------ccccccceeeecchhhhhcch-HHHHhcc-cceEecccchhHH-hhHHHHhhhhh
Confidence 999999998874321 223468999999999998776 8888877 9999999999995 67777788899
Q ss_pred CcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCC-------CCCceEEccCCeeeecCCccCcCCCCCCeEECC
Q 036593 366 LILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP-------YDLCHLELNGNKLSGHIPPCLASLTSLRELRLG 438 (574)
Q Consensus 366 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~ 438 (574)
|+.+.+..|++. -.+....++.+|++|++..|++....+ ..+..++.+.+.+.......=...+.|+.|.+.
T Consensus 289 L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 289 LVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 999999999987 445566779999999999999874222 123344555555542211112346789999999
Q ss_pred CCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccC
Q 036593 439 SNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI 518 (574)
Q Consensus 439 ~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 518 (574)
+|.++......+.+..+|+.|+|++|++.......+.++..|+.|++++|.++ .++..+..++.|++|...+|++. ..
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~f 445 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SF 445 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ec
Confidence 99999777778889999999999999998777778899999999999999999 56788999999999999999999 67
Q ss_pred CccccCCcCCCeeeCCCCcccccC-CcCcccCCCCCeEeccCCc
Q 036593 519 PESVGSLISLESLDLSGNNFSGKI-PKSLEALSHLKQFNVSQNM 561 (574)
Q Consensus 519 ~~~l~~~~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~l~l~~n~ 561 (574)
| .+..+++|+.+|++.|.+.... ++.... |+|+.||+++|.
T Consensus 446 P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 446 P-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred h-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 7 7788899999999999998643 333333 899999999996
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=232.88 Aligned_cols=321 Identities=20% Similarity=0.308 Sum_probs=172.0
Q ss_pred CCccccCCC-CCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccC
Q 036593 106 IPTWIGVLS-KLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGN 184 (574)
Q Consensus 106 ~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 184 (574)
.|..+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.++.+. .++.++..+++|++|+++++......+ .++.
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~ 655 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSM 655 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-cccc
Confidence 344444443 4666666665554 444444 3456666666666554 455555666666666666553322233 3555
Q ss_pred CCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEE
Q 036593 185 LQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGL 264 (574)
Q Consensus 185 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 264 (574)
+++|++|++.+|......|..+..+++|+.|++++|.....+|... .+++|+.|++++|......+. ...+|+.|
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L 730 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPD---ISTNISWL 730 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCcccccc---ccCCcCee
Confidence 6666666666665555566666667777777777665444555543 466677777666643322222 13457777
Q ss_pred eCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccce
Q 036593 265 DLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQS 344 (574)
Q Consensus 265 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 344 (574)
+++++.+. ..|..+ .+++|++|.+..+...... ..+..+. ......+++|+.
T Consensus 731 ~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~---------~~~~~l~-----------------~~~~~~~~sL~~ 782 (1153)
T PLN03210 731 DLDETAIE-EFPSNL-RLENLDELILCEMKSEKLW---------ERVQPLT-----------------PLMTMLSPSLTR 782 (1153)
T ss_pred ecCCCccc-cccccc-cccccccccccccchhhcc---------ccccccc-----------------hhhhhccccchh
Confidence 77777665 334333 4566666666553321110 0000000 000111234555
Q ss_pred EEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCC---CCCceEEccCCeeeec
Q 036593 345 FYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP---YDLCHLELNGNKLSGH 421 (574)
Q Consensus 345 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~l~~~~l~~~ 421 (574)
|.+++|.....+|..+.++++|+.|++++|...+.++... .+++|++|++++|.....+| .+++.|++++|.++ .
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~ 860 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-E 860 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-c
Confidence 5555555555566667777777777777765433444433 56777777777765433222 34445555555544 4
Q ss_pred CCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCc
Q 036593 422 IPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNS 465 (574)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~ 465 (574)
+|..+..+++|+.|++++|.-...++.....+++|+.+++++|.
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 45555556666666666654333444445555566666665553
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-22 Score=222.76 Aligned_cols=320 Identities=21% Similarity=0.271 Sum_probs=211.1
Q ss_pred cCCcCCCCCC-CCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhc
Q 036593 129 PIPNSLFNLS-KLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF 207 (574)
Q Consensus 129 ~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 207 (574)
..|..+..++ +|+.|.+..+.+. .+|..+ ...+|++|++.++.+. ..+..+..+++|+.++++++......| .+.
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls 654 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLS 654 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccc
Confidence 3455566654 6999999998886 677766 5789999999999887 456678889999999999876544555 477
Q ss_pred ccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCce
Q 036593 208 NISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNV 287 (574)
Q Consensus 208 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 287 (574)
.+++|+.|++++|.....+|..+. .+++|+.|++++|......+..+ .+++|+.|++++|......|.. ..+|+.
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~ 729 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISW 729 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCe
Confidence 899999999999876557776655 67777777777664333333322 4455555555555322222211 223444
Q ss_pred EEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCc
Q 036593 288 LSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLI 367 (574)
Q Consensus 288 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 367 (574)
|+++++.+... |..+ .+++|+
T Consensus 730 L~L~~n~i~~l----------------------------------------------------------P~~~-~l~~L~ 750 (1153)
T PLN03210 730 LDLDETAIEEF----------------------------------------------------------PSNL-RLENLD 750 (1153)
T ss_pred eecCCCccccc----------------------------------------------------------cccc-cccccc
Confidence 44444333221 1111 223333
Q ss_pred EEECcCCCCcc-------cCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCC
Q 036593 368 LLTLDFNDLNG-------TIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSN 440 (574)
Q Consensus 368 ~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 440 (574)
+|.+..+.... ..+..+...++|++|++++|... ..+|..+..+++|+.|++++|
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l------------------~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL------------------VELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCc------------------cccChhhhCCCCCCEEECCCC
Confidence 33333321110 00111122345555655555433 256677888999999999998
Q ss_pred eecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCc
Q 036593 441 KLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPE 520 (574)
Q Consensus 441 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 520 (574)
...+.+|... .+++|++|++++|.....+|.. .++|+.|++++|.+. ..|..+..+++|+.|++++|.-...++.
T Consensus 813 ~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 813 INLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 6554566555 6889999999998655444432 368999999999988 5677888899999999999865556777
Q ss_pred cccCCcCCCeeeCCCCccc
Q 036593 521 SVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 521 ~l~~~~~L~~L~l~~n~~~ 539 (574)
.+..+++|+.+++++|.-.
T Consensus 888 ~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 888 NISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ccccccCCCeeecCCCccc
Confidence 7888899999999999643
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-25 Score=199.46 Aligned_cols=274 Identities=23% Similarity=0.239 Sum_probs=175.9
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccC-
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRN- 123 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~- 123 (574)
-.++.++.+++ .+|..+. +.-.++.|..|.|...-+.+|+.+++||.|||+.|.|+.+.|++|..+++|..|.+.+
T Consensus 49 ~~VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 49 GIVDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred ceEEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 34555666665 3444343 2555666666666655555666666666666666666666666666666666665555
Q ss_pred CcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcc-----
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNL----- 198 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----- 198 (574)
|+|.+.....|.++..++.|.+.-+.+.....++|..+++|..|.+.+|.+..+....|..+..++++.+..|++
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 556644444566666666666666666655566666666666666666666544444566666666666555541
Q ss_pred -------------------------------cccCchhhccc-CCCcEEEcccCcccccCCchhhcCCCCcCeeeccccc
Q 036593 199 -------------------------------SGLIPPAIFNI-STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINN 246 (574)
Q Consensus 199 -------------------------------~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 246 (574)
....+..|... ..+..--.+.+......|...++.+++|++|++++|.
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 11111111100 1111111122333346676667788889999999888
Q ss_pred ceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCC
Q 036593 247 LIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNP 326 (574)
Q Consensus 247 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 326 (574)
++.+...+|.+..++++|.+.+|++.......|.++..|+.|++.+|+|+....+. |..+.+|.+|.+-.|+
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a--------F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA--------FQTLFSLSTLNLLSNP 357 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc--------ccccceeeeeehccCc
Confidence 88888888888888999999888887777777888888888998888888875444 7778888888888777
Q ss_pred CCC
Q 036593 327 LGG 329 (574)
Q Consensus 327 ~~~ 329 (574)
+-.
T Consensus 358 ~~C 360 (498)
T KOG4237|consen 358 FNC 360 (498)
T ss_pred ccC
Confidence 653
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-24 Score=196.92 Aligned_cols=416 Identities=22% Similarity=0.199 Sum_probs=257.4
Q ss_pred CCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeeccc-ccCcccCchhccCCCCCCEEE
Q 036593 90 GRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASF-NVIDGNIPSGIGNLSNLFDLD 168 (574)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 168 (574)
+.-..++|..|.|+.+.+.+|+.+++||.|||++|.|+.+.|++|..+.++-.|.+.+ |.|+......|+++..|+-|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4567899999999999999999999999999999999999999999999998887766 888855556789999999999
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccc------------cCCchhhcCCCC
Q 036593 169 LRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG------------RLPSTIGHSLPN 236 (574)
Q Consensus 169 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------------~~~~~~~~~l~~ 236 (574)
+.-|.+.-...++|..+++|..|.+.+|.+...--..|..+..++.+.+..+.... ..+.++. ....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets-garc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS-GARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc-ccee
Confidence 99999998888999999999999999999886666688889999999888776221 1111111 1222
Q ss_pred cCeeecccccceecCCcCccCC-CCccEEeCCCC-ceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCC
Q 036593 237 IEYLTLAINNLIGTIPDSLTNA-SKLIGLDLGSN-SFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNC 314 (574)
Q Consensus 237 L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 314 (574)
.....+.+..+.......|... ..+.+--.+.+ .........|..+++|+++++++|.++.+.... |.+.
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a--------Fe~~ 297 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA--------FEGA 297 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh--------hcch
Confidence 2222232222222222222211 11111111222 222223345788899999999999988876554 7788
Q ss_pred CCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEe
Q 036593 315 RKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLS 394 (574)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 394 (574)
..+++|.+..|.+..+... .|..+..|+.|++++|+++...+.+|....+|.+|+
T Consensus 298 a~l~eL~L~~N~l~~v~~~-------------------------~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSG-------------------------MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred hhhhhhhcCcchHHHHHHH-------------------------hhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence 8888888888876644322 345666677777777777766677777777777777
Q ss_pred ccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccc
Q 036593 395 LEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV 474 (574)
Q Consensus 395 l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 474 (574)
+-.|.+-..---.+-.=.+...... ..| -.+..-.++.+.+++..+...-.. .=++... . ..+.+.
T Consensus 353 l~~Np~~CnC~l~wl~~Wlr~~~~~-~~~-~Cq~p~~~~~~~~~dv~~~~~~c~------~~ee~~~---~---~s~~cP 418 (498)
T KOG4237|consen 353 LLSNPFNCNCRLAWLGEWLRKKSVV-GNP-RCQSPGFVRQIPISDVAFGDFRCG------GPEELGC---L---TSSPCP 418 (498)
T ss_pred hccCcccCccchHHHHHHHhhCCCC-CCC-CCCCCchhccccchhccccccccC------CccccCC---C---CCCCCC
Confidence 7666543110000000000111101 011 112223456666666654321111 0001110 0 011122
Q ss_pred cCCCCCCEE-eCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCC
Q 036593 475 QKLKVLRVL-DLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLK 553 (574)
Q Consensus 475 ~~l~~L~~L-~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 553 (574)
..++-+.++ ..++..+. .+|..+ ...-.+|++.+|.++ .+|.. .+.+| .+++++|++....-..|.+|+.|.
T Consensus 419 ~~c~c~~tVvRcSnk~lk-~lp~~i--P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~ 491 (498)
T KOG4237|consen 419 PPCTCLDTVVRCSNKLLK-LLPRGI--PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLS 491 (498)
T ss_pred CCcchhhhhHhhcccchh-hcCCCC--CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhh
Confidence 334444332 33333333 333322 235677888888887 45544 55667 788888888755555678888888
Q ss_pred eEeccCC
Q 036593 554 QFNVSQN 560 (574)
Q Consensus 554 ~l~l~~n 560 (574)
++-+++|
T Consensus 492 tlilsyn 498 (498)
T KOG4237|consen 492 TLILSYN 498 (498)
T ss_pred eeEEecC
Confidence 8877765
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-19 Score=183.48 Aligned_cols=259 Identities=27% Similarity=0.363 Sum_probs=145.4
Q ss_pred cCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCC
Q 036593 237 IEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRK 316 (574)
Q Consensus 237 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (574)
-..|+++.+.+.. .|..+. ++|+.|.+.+|.++. .|. ..++|++|++++|.++..+. ..++
T Consensus 203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~------------lp~s 263 (788)
T PRK15387 203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV------------LPPG 263 (788)
T ss_pred CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC------------cccc
Confidence 4456666665552 333332 356666666666653 232 23566666666666654321 1245
Q ss_pred CcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEecc
Q 036593 317 LSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLE 396 (574)
Q Consensus 317 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 396 (574)
|+.|++++|.+.... ..+ ++|+.|++++|.++... . ..++|+.|+++
T Consensus 264 L~~L~Ls~N~L~~Lp-----~lp------------------------~~L~~L~Ls~N~Lt~LP-~---~p~~L~~LdLS 310 (788)
T PRK15387 264 LLELSIFSNPLTHLP-----ALP------------------------SGLCKLWIFGNQLTSLP-V---LPPGLQELSVS 310 (788)
T ss_pred cceeeccCCchhhhh-----hch------------------------hhcCEEECcCCcccccc-c---cccccceeECC
Confidence 566666665554321 112 33444555555444221 1 12445555555
Q ss_pred CCcccc--cCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccc
Q 036593 397 DNNLEG--SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV 474 (574)
Q Consensus 397 ~~~~~~--~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 474 (574)
+|++++ ..|..++.|++++|.++ .+|. ...+|++|++++|++++ +|.. ..+|+.|++++|.+.. +|..
T Consensus 311 ~N~L~~Lp~lp~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l- 380 (788)
T PRK15387 311 DNQLASLPALPSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL- 380 (788)
T ss_pred CCccccCCCCcccccccccccCccc-cccc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc-
Confidence 555443 23344555555555554 2332 12467777777777763 3332 3467777777777764 3322
Q ss_pred cCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCe
Q 036593 475 QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQ 554 (574)
Q Consensus 475 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 554 (574)
..+|+.|++++|++.. ++.. .++|+.|++++|++. .+|..+ .+|+.|++++|+++ .+|..+..+++|+.
T Consensus 381 --~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~ 449 (788)
T PRK15387 381 --PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETT 449 (788)
T ss_pred --ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCe
Confidence 2467777777777763 3322 256777788887776 344432 35677777777777 56777777777888
Q ss_pred EeccCCccccccCC
Q 036593 555 FNVSQNMLEGEIPV 568 (574)
Q Consensus 555 l~l~~n~~~~~~p~ 568 (574)
|++++|++++..|.
T Consensus 450 LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 450 VNLEGNPLSERTLQ 463 (788)
T ss_pred EECCCCCCCchHHH
Confidence 88888877776554
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-18 Score=174.47 Aligned_cols=222 Identities=30% Similarity=0.331 Sum_probs=104.7
Q ss_pred CCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhh
Q 036593 259 SKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF 338 (574)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 338 (574)
++|++|++++|.++. .|. ..++|+.|+++.|.+...+. ..++|+.|++++|.++.... .
T Consensus 242 ~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls~N~L~~Lp~------------lp~~L~~L~Ls~N~Lt~LP~-----~ 300 (788)
T PRK15387 242 PELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA------------LPSGLCKLWIFGNQLTSLPV-----L 300 (788)
T ss_pred CCCcEEEecCCccCc-ccC---cccccceeeccCCchhhhhh------------chhhcCEEECcCCccccccc-----c
Confidence 445555555555442 221 12355555555555443210 11345555555555443211 1
Q ss_pred ccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCee
Q 036593 339 SASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKL 418 (574)
Q Consensus 339 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l 418 (574)
+++|+.|++++|.+.. +|.. ..+|+.|++++|.++.. +. -.++|++|++++|+++.
T Consensus 301 p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~L-P~---lp~~Lq~LdLS~N~Ls~---------------- 356 (788)
T PRK15387 301 PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSL-PT---LPSGLQELSVSDNQLAS---------------- 356 (788)
T ss_pred ccccceeECCCCcccc-CCCC---cccccccccccCccccc-cc---cccccceEecCCCccCC----------------
Confidence 1234444444444432 2221 13456666666666532 21 11356667776666663
Q ss_pred eecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccc
Q 036593 419 SGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTI 498 (574)
Q Consensus 419 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 498 (574)
+|.. .++|+.|++++|++.. ++.. ..+|+.|++++|.+.. +|.. .++|+.|++++|.+.. +|..
T Consensus 357 ---LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l- 420 (788)
T PRK15387 357 ---LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML- 420 (788)
T ss_pred ---CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc-
Confidence 2221 2345555555555542 2221 2345555666555543 2211 2455666666665552 2321
Q ss_pred cCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCc
Q 036593 499 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPK 544 (574)
Q Consensus 499 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 544 (574)
..+|+.|++++|+++ .+|..+..+++|+.|++++|++....+.
T Consensus 421 --~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 421 --PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred --hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 234555666666665 4555555566666666666666544333
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-19 Score=175.76 Aligned_cols=285 Identities=26% Similarity=0.303 Sum_probs=160.2
Q ss_pred eeccccccee-cCCcCccCCCCccEEeCCCCceeec----CCCCccCCCcCceEEccCCcccccCCCCccccccccccCC
Q 036593 240 LTLAINNLIG-TIPDSLTNASKLIGLDLGSNSFSGH----IPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNC 314 (574)
Q Consensus 240 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 314 (574)
|++..+.+.. .....+..+..|+.++++++.++.. .+..+...+.+++++++.+.+.... .........+..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~--~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIP--RGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcc--hHHHHHHHHHHhc
Confidence 3444444431 2223344555677777777766322 2233445566677776666544200 0011122334556
Q ss_pred CCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCccc----CCcCcccc-CC
Q 036593 315 RKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGT----IPTSVGTL-QQ 389 (574)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~-~~ 389 (574)
++|+.|+++++.+....+..+.... .. ++|++|++++|.+.+. ....+..+ ++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~---------------------~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~ 138 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLL---------------------RS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHh---------------------cc-CcccEEEeeCCccchHHHHHHHHHHHhCCCC
Confidence 6666666666665543322222211 12 3466666666655421 12223344 56
Q ss_pred CCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeeccc----CCccccCCCCCCeEeCCCCc
Q 036593 390 LQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS----IPSSLWSLEYILEINLSSNS 465 (574)
Q Consensus 390 L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~~~ 465 (574)
|++|++++|.+++..+. .+...+..+++|++|++++|.+.+. .+..+..+++|++|++++|.
T Consensus 139 L~~L~L~~n~l~~~~~~--------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 139 LEKLVLGRNRLEGASCE--------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred ceEEEcCCCcCCchHHH--------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 66666666665531110 2233455667788888888877632 22334455688888888887
Q ss_pred ceec----CCccccCCCCCCEEeCCCCcccccCccccc-----CCCCCCEeeCCCCcccc----cCCccccCCcCCCeee
Q 036593 466 LNDS----LPSNVQKLKVLRVLDLSRNQLSGNIPSTIG-----ALVDLETLSLASNQFQG----PIPESVGSLISLESLD 532 (574)
Q Consensus 466 l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~ 532 (574)
+.+. ....+..+++|++|++++|.+.+.....+. ..+.|+.|++++|.+++ .....+..+++|+.++
T Consensus 205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 7533 233456778888888888887643222222 23788889998888862 2334566668888899
Q ss_pred CCCCccccc----CCcCcccC-CCCCeEeccCCcc
Q 036593 533 LSGNNFSGK----IPKSLEAL-SHLKQFNVSQNML 562 (574)
Q Consensus 533 l~~n~~~~~----~~~~l~~l-~~L~~l~l~~n~~ 562 (574)
+++|.+... ....+... +.|+++++.+|++
T Consensus 285 l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 285 LRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999888853 22233334 6788888888864
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=166.74 Aligned_cols=180 Identities=27% Similarity=0.441 Sum_probs=96.1
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCccccc---CCCCCceEEccCCe
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGS---IPYDLCHLELNGNK 417 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~l~l~~~~ 417 (574)
.++.|++++|.+. .+|..+. .+|+.|++++|.+.. ++..+ .++|+.|++++|+++.. +|..+..|++++|.
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~ 315 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNS 315 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCc
Confidence 3444444444443 2333222 356666666666553 23222 13566666666665531 22344455555555
Q ss_pred eeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCccc
Q 036593 418 LSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPST 497 (574)
Q Consensus 418 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 497 (574)
++ .+|..+ .++|+.|++++|.++. ++..+ +++|+.|++++|.+.. +|..+. ++|++|++++|.+.. +|..
T Consensus 316 Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt~-LP~~ 385 (754)
T PRK15370 316 LT-ALPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALTN-LPEN 385 (754)
T ss_pred cc-cCCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCCC-CCHh
Confidence 54 233322 2567777777777653 44433 2567777777777653 343332 567777777777663 3333
Q ss_pred ccCCCCCCEeeCCCCcccccCCccccC----CcCCCeeeCCCCccc
Q 036593 498 IGALVDLETLSLASNQFQGPIPESVGS----LISLESLDLSGNNFS 539 (574)
Q Consensus 498 ~~~~~~L~~L~l~~n~~~~~~~~~l~~----~~~L~~L~l~~n~~~ 539 (574)
+. ++|+.|++++|++. .+|..+.+ ++.+..|++.+|++.
T Consensus 386 l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 386 LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 32 35777777777766 44443333 356667777777765
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-18 Score=169.39 Aligned_cols=177 Identities=23% Similarity=0.255 Sum_probs=86.1
Q ss_pred EEcCCCCCc-cccCCCccCCCCCcEEEccCCcccc----cCchhhcCCCCCCEEEccCCcCcc------CCCccccCCCC
Q 036593 47 LNLSGMGLG-GTIPPHLGNLSFLMSLDVTLNNFYG----HLPNELGKLGRLKFISFSFNKLSG------SIPTWIGVLSK 115 (574)
Q Consensus 47 l~l~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~ 115 (574)
|++.++.++ +.....+..+.+|++|+++++.+.. .++..+...+.|+.++++++.+.. ..+..+.++++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 445555554 2334444555567777777666532 234445556666677666665441 12234555666
Q ss_pred CCEEEccCCcccccCCcCCCCC---CCCceeecccccCcc----cCchhccCC-CCCCEEEccCCcCCcC----CCcccc
Q 036593 116 LQIMSLRNNNITGPIPNSLFNL---SKLEMLQASFNVIDG----NIPSGIGNL-SNLFDLDLRHNNLQDQ----IPTEIG 183 (574)
Q Consensus 116 L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~----~~~~~l~~l-~~L~~L~l~~~~~~~~----~~~~l~ 183 (574)
|+.|++++|.+....+..+..+ ++|++|++++|.+.+ .+...+..+ ++|++|++++|.++.. ....+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 6666666665543333333222 236666666555441 112233444 5556666665555421 122334
Q ss_pred CCCCCCEEEccCCccccc----CchhhcccCCCcEEEcccCccc
Q 036593 184 NLQNLESLALGTNNLSGL----IPPAIFNISTIRVLNLHSNQFS 223 (574)
Q Consensus 184 ~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~ 223 (574)
.+++|++|++++|.+.+. .+..+..+++|++|++++|.+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 445555555555554421 1122233345555555555443
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-16 Score=165.09 Aligned_cols=125 Identities=21% Similarity=0.380 Sum_probs=75.2
Q ss_pred CCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcc----cccCCCCCC
Q 036593 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPS----TIGALVDLE 505 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~ 505 (574)
++|+.|++++|++. .+|..+ .++|++|++++|.+.. +|..+. .+|+.|++++|++. .+|. .+..++++.
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT 418 (754)
T ss_pred CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence 68888888888876 445444 3678888888888864 343333 36888888888887 3343 334457888
Q ss_pred EeeCCCCcccccCCccccCCcCCCeeeCCCCcc-cccCCcCcccCCCCCeEeccCCccccccCC
Q 036593 506 TLSLASNQFQGPIPESVGSLISLESLDLSGNNF-SGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 506 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~-~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
.|++.+|++.. ..+ .+|+.+ ++.+.+ +..++......+.++....-++.+.+++|.
T Consensus 419 ~L~L~~Npls~---~tl---~~L~~L-l~s~~~~gp~i~~~~~~~~~l~~~~~l~~a~~~Wl~~ 475 (754)
T PRK15370 419 RIIVEYNPFSE---RTI---QNMQRL-MSSVGYQGPRVLFAMGDFSIVRVTRPLHQAVQGWLTN 475 (754)
T ss_pred EEEeeCCCccH---HHH---HHHHHh-hhcccccCCcccccccccccccccchHHHHHhccCCc
Confidence 99999998873 233 333333 222222 112222333344555544455566666665
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-17 Score=132.48 Aligned_cols=163 Identities=27% Similarity=0.512 Sum_probs=114.9
Q ss_pred ccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCc
Q 036593 62 LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLE 141 (574)
Q Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 141 (574)
+.++.+++.|.|++|.++ .+|..+..+.+|++|++.+|++. .+|..++.+++|+.|++.-|++. +.|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 555667777777777775 45556777777777777777776 67777777777777777777766 7777777777777
Q ss_pred eeecccccCc-ccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccC
Q 036593 142 MLQASFNVID-GNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSN 220 (574)
Q Consensus 142 ~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 220 (574)
.||+..|++. ..+|..|..|+.|+.|.+++|.+. ..|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 7777776654 356666667777777777777664 55666777777777777777664 55666777777777777777
Q ss_pred cccccCCchh
Q 036593 221 QFSGRLPSTI 230 (574)
Q Consensus 221 ~~~~~~~~~~ 230 (574)
++. .+|.++
T Consensus 184 rl~-vlppel 192 (264)
T KOG0617|consen 184 RLT-VLPPEL 192 (264)
T ss_pred eee-ecChhh
Confidence 766 555444
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.8e-17 Score=130.80 Aligned_cols=163 Identities=33% Similarity=0.608 Sum_probs=113.9
Q ss_pred CCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCe
Q 036593 362 NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNK 441 (574)
Q Consensus 362 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 441 (574)
.+.+++.|.++.|.++ ..+..+..+.+|+.|++.+|+++ .+|..+..+++|+.|++.-|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-------------------~lp~~issl~klr~lnvgmnr 90 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-------------------ELPTSISSLPKLRILNVGMNR 90 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-------------------hcChhhhhchhhhheecchhh
Confidence 4455666666666666 34445666667777777777666 566667777777777777777
Q ss_pred ecccCCccccCCCCCCeEeCCCCccee-cCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCc
Q 036593 442 LTSSIPSSLWSLEYILEINLSSNSLND-SLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPE 520 (574)
Q Consensus 442 ~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 520 (574)
+. ..|..|+.++.|+.|++++|.+.+ ..|+.|-.++.|+.|.++.|++. .+|..++.+++|+-|.++.|.+. .+|.
T Consensus 91 l~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk 167 (264)
T KOG0617|consen 91 LN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK 167 (264)
T ss_pred hh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH
Confidence 65 667777777777777777777654 36666777777777777777777 56666777777777777777777 6777
Q ss_pred cccCCcCCCeeeCCCCcccccCCcCccc
Q 036593 521 SVGSLISLESLDLSGNNFSGKIPKSLEA 548 (574)
Q Consensus 521 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~ 548 (574)
.++.++.|++|.++||.++ .+|..+++
T Consensus 168 eig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHHHHHHHHHHhcccceee-ecChhhhh
Confidence 7777777777777777777 44444443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-14 Score=151.08 Aligned_cols=162 Identities=20% Similarity=0.175 Sum_probs=120.6
Q ss_pred hHHHHHHhhHhcccccCCCCccceee----e-------eecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCc
Q 036593 9 NLFQSHLAIMLLYLLKTTNMRLSWVG----I-------SCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNN 77 (574)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 77 (574)
.+++|||+|++.|.|.+++-.-+-.. . +-......+|++.+.++.+.. ++.. ..++.|++|-+.++.
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~ 556 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNS 556 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh-ccCC-CCCCccceEEEeecc
Confidence 78999999999999998833222221 0 001123467888887777653 3332 345689999999886
Q ss_pred --ccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCc
Q 036593 78 --FYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIP 155 (574)
Q Consensus 78 --~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (574)
+.......|..++.|++||+++|.-...+|..++.+-+||+|+++++.+. .+|..+.++..|.+|++..+......+
T Consensus 557 ~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 557 DWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred hhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc
Confidence 44444556888999999999988766689999999999999999999988 888899999999999998876554555
Q ss_pred hhccCCCCCCEEEccCCc
Q 036593 156 SGIGNLSNLFDLDLRHNN 173 (574)
Q Consensus 156 ~~l~~l~~L~~L~l~~~~ 173 (574)
.....+++||+|.+....
T Consensus 636 ~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRSA 653 (889)
T ss_pred chhhhcccccEEEeeccc
Confidence 656668899999887654
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-14 Score=131.62 Aligned_cols=195 Identities=23% Similarity=0.272 Sum_probs=92.8
Q ss_pred cccCCCCCcEEECcCCCCcccCCcC----ccccCCCCeEeccCCcccccCCC----CCceEEccCCeeeecCCccCcCCC
Q 036593 359 EIGNLRGLILLTLDFNDLNGTIPTS----VGTLQQLQGLSLEDNNLEGSIPY----DLCHLELNGNKLSGHIPPCLASLT 430 (574)
Q Consensus 359 ~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~l~~~~l~~~~~~~~~~~~ 430 (574)
++..+++|+++++|+|.+....+.. +.++..|++|+|.+|++....-. .+..+. .......-+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~---------~~kk~~~~~ 157 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA---------VNKKAASKP 157 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH---------HHhccCCCc
Confidence 3445567777777777665443333 34567777777777776521000 000000 011122334
Q ss_pred CCCeEECCCCeeccc----CCccccCCCCCCeEeCCCCcceec----CCccccCCCCCCEEeCCCCccccc----Ccccc
Q 036593 431 SLRELRLGSNKLTSS----IPSSLWSLEYILEINLSSNSLNDS----LPSNVQKLKVLRVLDLSRNQLSGN----IPSTI 498 (574)
Q Consensus 431 ~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~ 498 (574)
.|+++...+|++... ....|+..+.|+.+.++.|.|... ....+..|++|++||+..|-++.. ....+
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 555555555554322 122344455555555555554322 123445555555555555554422 12334
Q ss_pred cCCCCCCEeeCCCCcccccCCccc-----cCCcCCCeeeCCCCcccc----cCCcCcccCCCCCeEeccCCcc
Q 036593 499 GALVDLETLSLASNQFQGPIPESV-----GSLISLESLDLSGNNFSG----KIPKSLEALSHLKQFNVSQNML 562 (574)
Q Consensus 499 ~~~~~L~~L~l~~n~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~l~l~~n~~ 562 (574)
..+++|++|++++|.+......++ ...|+|+.|.+.+|.++. .+..+....|.|+.|++++|.+
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 445555555555555543322221 223555555555555543 1112233445555666665555
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.6e-14 Score=125.79 Aligned_cols=249 Identities=20% Similarity=0.241 Sum_probs=121.9
Q ss_pred cCCCCccEEeCCCCceeec----CCCCccCCCcCceEEccCCcccccC--CCCccccccccccCCCCCcEEEccCCCCCC
Q 036593 256 TNASKLIGLDLGSNSFSGH----IPNTFGNLRHLNVLSIRTNNLTTES--SSADQWSFLSSLTNCRKLSYLVLDSNPLGG 329 (574)
Q Consensus 256 ~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 329 (574)
.....++.++++||.+... ....+.+.++|+..+++.--..... ......-+...+.+++.|++|++|+|-+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3445566666666665432 2233444556666655442111100 000011133456677777777777777665
Q ss_pred CCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcC-------------ccccCCCCeEecc
Q 036593 330 ILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTS-------------VGTLQQLQGLSLE 396 (574)
Q Consensus 330 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~ 396 (574)
..+..+..+ +.++..|++|.+.+|.+....... ...-++|+++...
T Consensus 107 ~g~~~l~~l---------------------l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 107 KGIRGLEEL---------------------LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred cchHHHHHH---------------------HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 444433332 234455555555555443221111 1122334444444
Q ss_pred CCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeeccc----CCccccCCCCCCeEeCCCCcceec---
Q 036593 397 DNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS----IPSSLWSLEYILEINLSSNSLNDS--- 469 (574)
Q Consensus 397 ~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~~~l~~~--- 469 (574)
+|++....- ..+...|...+.|+.+.++.|.|... ...++..|++|+.|+|.+|.++..
T Consensus 166 rNrlen~ga--------------~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 166 RNRLENGGA--------------TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred ccccccccH--------------HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 443321000 01223344556666666666655422 223455566666666666655432
Q ss_pred -CCccccCCCCCCEEeCCCCcccccCcccc-----cCCCCCCEeeCCCCccccc----CCccccCCcCCCeeeCCCCccc
Q 036593 470 -LPSNVQKLKVLRVLDLSRNQLSGNIPSTI-----GALVDLETLSLASNQFQGP----IPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 470 -~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+...++.+++|+.|++++|.+.......| ...|+|++|.+.+|.++.. +..+....+.|+.|+|++|.+.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 23344556666777777766654333222 2256777777777766642 1122334566777777777763
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-12 Score=113.95 Aligned_cols=203 Identities=23% Similarity=0.271 Sum_probs=138.7
Q ss_pred cCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCccccc---CCCCCceEEccC---CeeeecCCccCcC
Q 036593 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGS---IPYDLCHLELNG---NKLSGHIPPCLAS 428 (574)
Q Consensus 355 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~l~l~~---~~l~~~~~~~~~~ 428 (574)
.+|..+..+.+|..+.++.+.-..+ .+....-|.|+++.+....+... .|.. ...+..+ .-.+|........
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~~~l~pe~-~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDVPSLLPET-ILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred ccccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccccccccchh-hhcCccCCCCCccCCceEEecch
Confidence 3445556667777777777654322 11222346778887776654431 1211 1111111 1111222223344
Q ss_pred CCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEee
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLS 508 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 508 (574)
...|+++|+++|.|+ .+.....-.|.++.|++++|.+... +.++.+++|..||+++|.+. ...++-..+.++++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 567999999999987 5566666778999999999998754 44788899999999999887 4445656688999999
Q ss_pred CCCCcccccCCccccCCcCCCeeeCCCCcccccCC-cCcccCCCCCeEeccCCccccc
Q 036593 509 LASNQFQGPIPESVGSLISLESLDLSGNNFSGKIP-KSLEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 509 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~l~l~~n~~~~~ 565 (574)
+++|.+... +++..+.+|..||+++|+|..... ..++++|-|+++.+.+||+.+.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999988743 577888899999999999875322 3588899999999999998764
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.2e-12 Score=106.97 Aligned_cols=127 Identities=28% Similarity=0.358 Sum_probs=49.6
Q ss_pred CcCCCCCCeEECCCCeecccCCcccc-CCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCC
Q 036593 426 LASLTSLRELRLGSNKLTSSIPSSLW-SLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDL 504 (574)
Q Consensus 426 ~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L 504 (574)
+.++.++++|+|.+|+|+.. +.+. .+.+|+.|++++|.+... +.+..++.|++|++++|.++.........+|+|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 34556789999999988733 2333 467889999999998754 357788999999999999985433222468899
Q ss_pred CEeeCCCCcccccC-CccccCCcCCCeeeCCCCcccccCCc----CcccCCCCCeEec
Q 036593 505 ETLSLASNQFQGPI-PESVGSLISLESLDLSGNNFSGKIPK----SLEALSHLKQFNV 557 (574)
Q Consensus 505 ~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~l~l 557 (574)
++|++++|++.... -..+..+++|+.|++.+|++... +. .+..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 99999999887532 24567788999999999998853 32 3567888988874
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-12 Score=118.41 Aligned_cols=67 Identities=19% Similarity=0.105 Sum_probs=32.3
Q ss_pred CCCccEEeCCCCceeecCC-CCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCC
Q 036593 258 ASKLIGLDLGSNSFSGHIP-NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330 (574)
Q Consensus 258 ~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 330 (574)
+.+|+.+.+.++....... .....+++++.|+++.|-+.... .+......+|+|+.|+++.|.+...
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~------~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF------PVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH------HHHHHHHhcccchhcccccccccCC
Confidence 4445555555554432111 23345566666666655444321 1223344556666666666655433
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-12 Score=118.35 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=18.5
Q ss_pred CCCCccEEeCCCCceeec-CCCCccCCCcCceEEccCCccccc
Q 036593 257 NASKLIGLDLGSNSFSGH-IPNTFGNLRHLNVLSIRTNNLTTE 298 (574)
Q Consensus 257 ~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~ 298 (574)
.+++|++|++..|++.++ ....+..+++|+.|.+..+.+...
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 344555555555555321 112233344455555444444443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-11 Score=108.51 Aligned_cols=131 Identities=31% Similarity=0.402 Sum_probs=100.5
Q ss_pred ccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCc
Q 036593 386 TLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNS 465 (574)
Q Consensus 386 ~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~ 465 (574)
....|+++++++|.|+ .+.....-.|.++.|++++|.+.... .++.+++|+.|+|++|.
T Consensus 282 TWq~LtelDLS~N~I~-------------------~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-------------------QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNL 340 (490)
T ss_pred hHhhhhhccccccchh-------------------hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccch
Confidence 3456667777777666 66667777889999999999987432 37778999999999998
Q ss_pred ceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccccc-CCccccCCcCCCeeeCCCCcccc
Q 036593 466 LNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGP-IPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 466 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
+... .+.=..+.+.++|.+++|.+.. .+.++.+-+|..|++++|+|... -...++++|.|+.+.+.+|++..
T Consensus 341 Ls~~-~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 341 LAEC-VGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hHhh-hhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 8643 3333567889999999998873 34577888999999999988752 22457899999999999999873
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-10 Score=118.95 Aligned_cols=119 Identities=29% Similarity=0.573 Sum_probs=92.3
Q ss_pred ceeeeeecCC----CCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCC
Q 036593 31 SWVGISCDSR----HQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106 (574)
Q Consensus 31 ~~~~~~~~~~----~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 106 (574)
.|.|+.|... ...++.|+++++.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|++|++++|++.+..
T Consensus 403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 403 PWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482 (623)
T ss_pred ccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC
Confidence 6999999531 124788888888888888888888888888888888888888888888888888888888888888
Q ss_pred CccccCCCCCCEEEccCCcccccCCcCCCCC-CCCceeeccccc
Q 036593 107 PTWIGVLSKLQIMSLRNNNITGPIPNSLFNL-SKLEMLQASFNV 149 (574)
Q Consensus 107 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~ 149 (574)
|..++++++|++|++++|.+.+..|..+... .++..+++.+|.
T Consensus 483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred chHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 8888888888888888888877777665542 344555555544
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-10 Score=98.11 Aligned_cols=110 Identities=30% Similarity=0.381 Sum_probs=44.5
Q ss_pred cCCCCCCeEeCCCCcceecCCcccc-CCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccc-cCCcCC
Q 036593 451 WSLEYILEINLSSNSLNDSLPSNVQ-KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV-GSLISL 528 (574)
Q Consensus 451 ~~~~~L~~L~L~~~~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l-~~~~~L 528 (574)
.++.++++|+|.+|.|... +.+. .+.+|++|++++|.+... ..+..++.|++|++++|.++. +...+ ..+|+|
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 3556789999999999754 3344 578999999999999954 357889999999999999995 44444 468999
Q ss_pred CeeeCCCCcccccC-CcCcccCCCCCeEeccCCccccc
Q 036593 529 ESLDLSGNNFSGKI-PKSLEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 529 ~~L~l~~n~~~~~~-~~~l~~l~~L~~l~l~~n~~~~~ 565 (574)
++|++++|++.... ...+..+++|+.|++.+||+...
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 99999999998632 25678899999999999999753
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-10 Score=114.25 Aligned_cols=179 Identities=35% Similarity=0.597 Sum_probs=105.0
Q ss_pred CCCcEEECcCCCCcccCCcCcccc-CCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCee
Q 036593 364 RGLILLTLDFNDLNGTIPTSVGTL-QQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKL 442 (574)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 442 (574)
+.++.+++.++.++.. +...... ++|+.|++++|++. .++..+..+++|+.|++++|++
T Consensus 116 ~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-------------------~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 116 TNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-------------------SLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred cceeEEecCCcccccC-ccccccchhhcccccccccchh-------------------hhhhhhhccccccccccCCchh
Confidence 4556666666655532 2222233 25666666665555 3334456667777777777776
Q ss_pred cccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccc
Q 036593 443 TSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV 522 (574)
Q Consensus 443 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 522 (574)
. ..+......+.|+.|++++|.+... +........|+++.+++|+.. ..+..+..++++..+.+.+|++. ..+..+
T Consensus 176 ~-~l~~~~~~~~~L~~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~ 251 (394)
T COG4886 176 S-DLPKLLSNLSNLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESI 251 (394)
T ss_pred h-hhhhhhhhhhhhhheeccCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchh
Confidence 5 3333333566777777777776543 222233445777777777533 23445666667777777777666 234555
Q ss_pred cCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCC
Q 036593 523 GSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 523 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
..+++++.|++++|.++.... +..+.+++.+++++|.++..+|.
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 666667777777777764333 66667777777777776666554
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-10 Score=124.57 Aligned_cols=248 Identities=20% Similarity=0.257 Sum_probs=155.4
Q ss_pred CCcEEEEEcCCCC--CccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCE
Q 036593 41 HQRVKALNLSGMG--LGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQI 118 (574)
Q Consensus 41 ~~~~~~l~l~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 118 (574)
.+.+++|-+.++. +.......|..++.|++|||++|.-.+.+|..++.+.+||+|+++++.+. .+|..++++..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3568888888886 44344445888999999999999877899999999999999999999998 89999999999999
Q ss_pred EEccCCcccccCCcCCCCCCCCceeecccccCc--ccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCC----EEE
Q 036593 119 MSLRNNNITGPIPNSLFNLSKLEMLQASFNVID--GNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLE----SLA 192 (574)
Q Consensus 119 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~ 192 (574)
|++..+......+.....+.+||+|.+...... ...-..+.++.+|+.+....... .....+..++.|. .+.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhh
Confidence 999988765455666667999999999776532 22223345666666666644332 1112233333333 222
Q ss_pred ccCCcccccCchhhcccCCCcEEEcccCcccccCCchhh----cC-CCCcCeeecccccceecCCcCccCCCCccEEeCC
Q 036593 193 LGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIG----HS-LPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLG 267 (574)
Q Consensus 193 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 267 (574)
+.++.. ...+..+..+.+|+.|.+.++.+.+....... .. ++++..+.+..+... -.+.+....++|+.|.+.
T Consensus 701 ~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 701 IEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLV 778 (889)
T ss_pred hccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEe
Confidence 222222 24445667788888888888876522111100 00 223333333333211 112222345677777777
Q ss_pred CCceeecCCCCccCCCcCceEEccCC
Q 036593 268 SNSFSGHIPNTFGNLRHLNVLSIRTN 293 (574)
Q Consensus 268 ~~~~~~~~~~~l~~l~~L~~L~l~~~ 293 (574)
.+...+........+..++.+.+..+
T Consensus 779 ~~~~~e~~i~~~k~~~~l~~~i~~f~ 804 (889)
T KOG4658|consen 779 SCRLLEDIIPKLKALLELKELILPFN 804 (889)
T ss_pred cccccccCCCHHHHhhhcccEEeccc
Confidence 77655444444444455554444333
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-11 Score=119.27 Aligned_cols=167 Identities=30% Similarity=0.458 Sum_probs=89.1
Q ss_pred EeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCcc
Q 036593 346 YAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPC 425 (574)
Q Consensus 346 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~ 425 (574)
+++.+++. ++|..+..+..|+.+.++.|.+. .++.++..+..|+.++++.|++. ..|..
T Consensus 81 DlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-------------------~lp~~ 139 (722)
T KOG0532|consen 81 DLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-------------------HLPDG 139 (722)
T ss_pred hccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-------------------cCChh
Confidence 33444443 34444444445555555544444 33344444455555555555444 34444
Q ss_pred CcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCC
Q 036593 426 LASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLE 505 (574)
Q Consensus 426 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 505 (574)
+..+ -|+.|-+++|+++ .+|..++..++|..|+.+.|.+. .++..+.++.+|+.|.+..|++.. +|..+. .-.|.
T Consensus 140 lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi 214 (722)
T KOG0532|consen 140 LCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLI 214 (722)
T ss_pred hhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCcee
Confidence 4333 2666666666665 45555555566666666666654 344445556666666666666652 333343 34556
Q ss_pred EeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 506 TLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 506 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
.|++++|++. .+|-.|.+++.|+.|-|.+|++.
T Consensus 215 ~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 215 RLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 6666666666 56666666666666666666655
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-11 Score=117.25 Aligned_cols=194 Identities=28% Similarity=0.442 Sum_probs=155.2
Q ss_pred CcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEc
Q 036593 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 121 (574)
......|++.|++. .+|..+..|..|..+.|.+|.+. .+|..+.++..|++|+|+.|+++ .+|..+..++ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 45567788888887 57777888888888999888874 67888999999999999999988 7777777775 899999
Q ss_pred cCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCccccc
Q 036593 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL 201 (574)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 201 (574)
++|+++ .+|..++..+.|..|+.+.|.+. .+|..++.+.+|+.|++.+|.+.. .|..+..+ .|..|+++.|++. .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee-e
Confidence 999988 78888888899999999999887 667778999999999999998874 56666655 4888999999987 7
Q ss_pred CchhhcccCCCcEEEcccCcccccCCchhhc--CCCCcCeeecccc
Q 036593 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGH--SLPNIEYLTLAIN 245 (574)
Q Consensus 202 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~l~~L~~L~l~~~ 245 (574)
+|..|.+|++|++|.|.+|.+. .-|..++. ...-.++|+...|
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 7888999999999999999887 55554431 1223455666555
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-09 Score=106.48 Aligned_cols=196 Identities=36% Similarity=0.495 Sum_probs=135.6
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCC-CCCEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLG-RLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 124 (574)
.++.+.+.+...+. .+...+.++.|++.++.+. .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 35555555532222 2445577888888888875 4455555563 8888888888877 55566788888888888888
Q ss_pred cccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCch
Q 036593 125 NITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPP 204 (574)
Q Consensus 125 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 204 (574)
++. ..+......+.|+.|+++++.+. .+|........|+++.++.|.+. ..+..+..+.++..+.+.++++... +.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence 887 55555557788888888888887 56665556666888888888433 2445567777777777777776532 45
Q ss_pred hhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecC
Q 036593 205 AIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTI 251 (574)
Q Consensus 205 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 251 (574)
.+..++.++.|++++|.+. .++. + ....+++.++++++.+....
T Consensus 250 ~~~~l~~l~~L~~s~n~i~-~i~~-~-~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 250 SIGNLSNLETLDLSNNQIS-SISS-L-GSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hhccccccceecccccccc-cccc-c-cccCccCEEeccCccccccc
Confidence 5677777888888888877 4444 3 26778888888877665443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-09 Score=75.63 Aligned_cols=59 Identities=36% Similarity=0.581 Sum_probs=30.5
Q ss_pred CCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCc
Q 036593 503 DLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNM 561 (574)
Q Consensus 503 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~ 561 (574)
+|++|++++|++....+..|..+++|+.|++++|.+....++.|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554444445555555555555555554444455555555555555554
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.5e-09 Score=110.10 Aligned_cols=109 Identities=31% Similarity=0.539 Sum_probs=72.2
Q ss_pred CCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCC
Q 036593 432 LRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLAS 511 (574)
Q Consensus 432 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 511 (574)
++.|+|++|.+.+..+..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|++.+..|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56667777776666666666667777777777776666666666667777777777776666666666677777777777
Q ss_pred CcccccCCccccCC-cCCCeeeCCCCcccc
Q 036593 512 NQFQGPIPESVGSL-ISLESLDLSGNNFSG 540 (574)
Q Consensus 512 n~~~~~~~~~l~~~-~~L~~L~l~~n~~~~ 540 (574)
|.+.+.+|..+... .++..+++.+|...+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 77666666665543 345566666665543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-09 Score=75.29 Aligned_cols=61 Identities=39% Similarity=0.549 Sum_probs=36.4
Q ss_pred CCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcc
Q 036593 478 KVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNF 538 (574)
Q Consensus 478 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 538 (574)
|+|++|++++|++....+..|.++++|++|++++|.+....+.+|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3455666666666555555566666666666666666655555666666666666666653
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.1e-10 Score=97.79 Aligned_cols=110 Identities=21% Similarity=0.141 Sum_probs=63.8
Q ss_pred CcEEEEEcCCCCCccc-cCCCccCC-CCCcEEEccCCcccc-cCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCE
Q 036593 42 QRVKALNLSGMGLGGT-IPPHLGNL-SFLMSLDVTLNNFYG-HLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQI 118 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~-~~~~~~~~-~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 118 (574)
+.+.++-+-..-+.+. ..+.+.-+ ..|+.|||+...++. .....++.|.+|+.|++.++++.+.+...+++..+|+.
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 4455555544333321 22333322 357777777766652 33445677777888888777777767777777777777
Q ss_pred EEccCCcccccC--CcCCCCCCCCceeecccccCc
Q 036593 119 MSLRNNNITGPI--PNSLFNLSKLEMLQASFNVID 151 (574)
Q Consensus 119 L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~ 151 (574)
|+++.+.--... .--+.+|..|..|+++.|...
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 777776422110 011345666666666666543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5e-09 Score=104.95 Aligned_cols=62 Identities=27% Similarity=0.326 Sum_probs=28.2
Q ss_pred CCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccc
Q 036593 234 LPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTT 297 (574)
Q Consensus 234 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 297 (574)
+..++.+.+..+.+.. ....+..+++++.+++.+|.+..... .+..+++|+.|++++|.|+.
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~ 132 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK 132 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccc
Confidence 3444444444444432 11224444555555555555542211 14445555555555555544
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.8e-10 Score=98.20 Aligned_cols=227 Identities=19% Similarity=0.160 Sum_probs=116.0
Q ss_pred CcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCccccc-CchhhcCC-CCCCEEEccCCcCccC-CCccccCCCCCCE
Q 036593 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGH-LPNELGKL-GRLKFISFSFNKLSGS-IPTWIGVLSKLQI 118 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~ 118 (574)
.-.+.+|+.+..+.......+.. ..+.++.+........ +...+.-+ ..|++|||+...++.. +-..++.|.+|+.
T Consensus 136 ~lW~~lDl~~r~i~p~~l~~l~~-rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 136 SLWQTLDLTGRNIHPDVLGRLLS-RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred cceeeeccCCCccChhHHHHHHh-CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 45667787777665332222211 3455565553333222 22223322 3578888877665422 2334567778888
Q ss_pred EEccCCcccccCCcCCCCCCCCceeecccccCccc--CchhccCCCCCCEEEccCCcCCcCCCcc-ccC-CCCCCEEEcc
Q 036593 119 MSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGN--IPSGIGNLSNLFDLDLRHNNLQDQIPTE-IGN-LQNLESLALG 194 (574)
Q Consensus 119 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~-l~~L~~L~l~ 194 (574)
|.+.++.+.+.+...+.+..+|+.++++.+.-... ..-.+.+|+.|.+|+++.|........+ +.. -++|..|+++
T Consensus 215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls 294 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS 294 (419)
T ss_pred ccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh
Confidence 88888777766666677777788888777643211 1122456677777777766544221111 111 1345555555
Q ss_pred CCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccc-eecCCcCccCCCCccEEeCCCCceee
Q 036593 195 TNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL-IGTIPDSLTNASKLIGLDLGSNSFSG 273 (574)
Q Consensus 195 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~ 273 (574)
++.-. +.....+.+.+.+|+|..||++++.. +......|.+++.|++|.++.|..
T Consensus 295 G~rrn----------------------l~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~-- 350 (419)
T KOG2120|consen 295 GYRRN----------------------LQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD-- 350 (419)
T ss_pred hhHhh----------------------hhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--
Confidence 44311 11111222333455555555554422 222223345566666666666532
Q ss_pred cCCC---CccCCCcCceEEccCC
Q 036593 274 HIPN---TFGNLRHLNVLSIRTN 293 (574)
Q Consensus 274 ~~~~---~l~~l~~L~~L~l~~~ 293 (574)
+.|. .+...|.|.+|++.++
T Consensus 351 i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 351 IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CChHHeeeeccCcceEEEEeccc
Confidence 2222 2455667777776665
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.6e-08 Score=99.75 Aligned_cols=192 Identities=31% Similarity=0.348 Sum_probs=103.6
Q ss_pred cCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCC----CCCceEEccCCeeeecCCccCcCCCCCCeEE
Q 036593 361 GNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP----YDLCHLELNGNKLSGHIPPCLASLTSLRELR 436 (574)
Q Consensus 361 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~ 436 (574)
..+++|+.+++.+|.+..... .+..+++|++|++++|.|+...+ ..|+.|++++|.+... ..+..+++|+.++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred ccccceeeeeccccchhhccc-chhhhhcchheeccccccccccchhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 344445555555554442211 13344555555555555443211 1133333333333311 2344477778888
Q ss_pred CCCCeecccCC-ccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCC--CCEeeCCCCc
Q 036593 437 LGSNKLTSSIP-SSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVD--LETLSLASNQ 513 (574)
Q Consensus 437 l~~n~~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--L~~L~l~~n~ 513 (574)
+++|.+...-. . ...+.+++.+.+.+|.+... ..+..+..+..+++..|.+.... .+...+. |+.+++++|+
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNR 243 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCc
Confidence 88887763322 1 45667777777877777543 22334445555577777666322 1223333 7888888888
Q ss_pred ccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccc
Q 036593 514 FQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563 (574)
Q Consensus 514 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~ 563 (574)
+. ..+..+..+..+..+++..|++... ..+...+.+..+....+++.
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 77 3435667777788888888777642 33444455555566555544
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.2e-09 Score=103.06 Aligned_cols=126 Identities=30% Similarity=0.327 Sum_probs=77.8
Q ss_pred CceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCC
Q 036593 408 LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSR 487 (574)
Q Consensus 408 l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~ 487 (574)
+...+++.|.++ .++..+.-++.|+.|+|++|++... +.+..+++|++|||+.|.++...--....|. |..|++++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 445556666665 5555666677777777777777533 2666677777777777777544333333444 77777777
Q ss_pred CcccccCcccccCCCCCCEeeCCCCccccc-CCccccCCcCCCeeeCCCCccc
Q 036593 488 NQLSGNIPSTIGALVDLETLSLASNQFQGP-IPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 488 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
|.++. + ..+.++.+|+.|++++|-+.+- .-..+..+..|+.|.|.||++-
T Consensus 242 N~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77662 2 3356677777777777766532 1123445566777777777764
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-08 Score=95.49 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=27.2
Q ss_pred cCCCCCcEEEccCCc-cccc-CchhhcCCCCCCEEEccCCc-CccCCCcc-ccCCCCCCEEEccCCc
Q 036593 63 GNLSFLMSLDVTLNN-FYGH-LPNELGKLGRLKFISFSFNK-LSGSIPTW-IGVLSKLQIMSLRNNN 125 (574)
Q Consensus 63 ~~~~~L~~L~L~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~-~~~l~~L~~L~l~~~~ 125 (574)
..|+++++|.+.+|. ++.. ....-..|++|++|++..|. +++..-.. -..+++|++++++++.
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 445555555555553 2111 11222345555555555532 22222221 1235555555555553
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-08 Score=87.01 Aligned_cols=196 Identities=19% Similarity=0.155 Sum_probs=124.0
Q ss_pred ccccCCCCCcEEECcCCCCcccCCcC----ccccCCCCeEeccCCcccccCCCCCceEEccCCeeee-----cCCccCcC
Q 036593 358 KEIGNLRGLILLTLDFNDLNGTIPTS----VGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG-----HIPPCLAS 428 (574)
Q Consensus 358 ~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~-----~~~~~~~~ 428 (574)
+++-.||+|+.++++.|.+....+.. ++.-..|++|.+++|++.-..-. ++.. ..-.-...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~----------rigkal~~la~nKKaa~ 155 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGG----------RIGKALFHLAYNKKAAD 155 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchh----------HHHHHHHHHHHHhhhcc
Confidence 45678899999999999877554443 35567888899888876521100 0000 00112345
Q ss_pred CCCCCeEECCCCeecccCC----ccccCCCCCCeEeCCCCcceecC-----CccccCCCCCCEEeCCCCcccccC----c
Q 036593 429 LTSLRELRLGSNKLTSSIP----SSLWSLEYILEINLSSNSLNDSL-----PSNVQKLKVLRVLDLSRNQLSGNI----P 495 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~L~~~~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~----~ 495 (574)
-|.|+......|++..-.. ..+..-..|+++.+..|.|.... ...+..+++|++||+..|-++... .
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 6889999999988753211 12333457889999988885442 224466788999999988876432 3
Q ss_pred ccccCCCCCCEeeCCCCcccccCCcc----c--cCCcCCCeeeCCCCcccccCCcC-----c--ccCCCCCeEeccCCcc
Q 036593 496 STIGALVDLETLSLASNQFQGPIPES----V--GSLISLESLDLSGNNFSGKIPKS-----L--EALSHLKQFNVSQNML 562 (574)
Q Consensus 496 ~~~~~~~~L~~L~l~~n~~~~~~~~~----l--~~~~~L~~L~l~~n~~~~~~~~~-----l--~~l~~L~~l~l~~n~~ 562 (574)
..+..++.|++|.+..|-++...... | ...|+|..|...+|.+....-.. + ..+|-|..+.+.+|+|
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 45566788899999998776543322 1 23377888888888765422111 1 2466677777777776
Q ss_pred c
Q 036593 563 E 563 (574)
Q Consensus 563 ~ 563 (574)
+
T Consensus 316 ~ 316 (388)
T COG5238 316 K 316 (388)
T ss_pred h
Confidence 5
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-07 Score=84.86 Aligned_cols=187 Identities=18% Similarity=0.182 Sum_probs=88.3
Q ss_pred CCCCCceeecccccCcc--cCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccc-cCchhhcccCCC
Q 036593 136 NLSKLEMLQASFNVIDG--NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSG-LIPPAIFNISTI 212 (574)
Q Consensus 136 ~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L 212 (574)
.+..++.+++..|.+.. .+..-+.++|.|+.|+++.|.+...+...=....+|++|-+.+..+.- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45666667776666642 222334666777777777666553221111234456666665554431 222334455555
Q ss_pred cEEEcccCcccc--cCCchhhcCCCCcCeeecccccceecC--CcCccCCCCccEEeCCCCceeec-CCCCccCCCcCce
Q 036593 213 RVLNLHSNQFSG--RLPSTIGHSLPNIEYLTLAINNLIGTI--PDSLTNASKLIGLDLGSNSFSGH-IPNTFGNLRHLNV 287 (574)
Q Consensus 213 ~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~ 287 (574)
++|.++.|.+.- .......+-.+.++++....|...... ...-..+|++..+.+..|++... ..+.+..+|.+--
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 666555552220 000001111223444444333322100 01112355666666666655422 2233444555556
Q ss_pred EEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCC
Q 036593 288 LSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGG 329 (574)
Q Consensus 288 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 329 (574)
|++..+++.. |.-...+.+++.|..|.++++++.+
T Consensus 229 LnL~~~~ids-------wasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 229 LNLGANNIDS-------WASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhccccccc-------HHHHHHHcCCchhheeeccCCcccc
Confidence 6665555543 2334456666666666666666654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-07 Score=83.50 Aligned_cols=233 Identities=17% Similarity=0.162 Sum_probs=122.3
Q ss_pred CCcEEEccCCccccc--CchhhcCCCCCCEEEccCCcCccC--CCccccCCCCCCEEEccCCcccccCCcCC-CCCCCCc
Q 036593 67 FLMSLDVTLNNFYGH--LPNELGKLGRLKFISFSFNKLSGS--IPTWIGVLSKLQIMSLRNNNITGPIPNSL-FNLSKLE 141 (574)
Q Consensus 67 ~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~ 141 (574)
-+..+.+.++.+..+ ....-..+..++.+||.+|.+++. +...+.++|.|++|+++.|.+...+ ..+ ....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceE
Confidence 344556666665432 222224567888888888887642 3344667888888888888766222 222 3456777
Q ss_pred eeecccccCcc-cCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccC
Q 036593 142 MLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSN 220 (574)
Q Consensus 142 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 220 (574)
.|.++++.+.. .....+..+|.+++|.++.|.+. .+.+..+.+.... +.++.+.+.+|
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r--------------q~n~Dd~c~e~~s-------~~v~tlh~~~c 183 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR--------------QLNLDDNCIEDWS-------TEVLTLHQLPC 183 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh--------------hhccccccccccc-------hhhhhhhcCCc
Confidence 77777776542 22233456667777777666322 1122221111111 12222333232
Q ss_pred ccccc-CCchhhcCCCCcCeeecccccceecC-CcCccCCCCccEEeCCCCceeec-CCCCccCCCcCceEEccCCcccc
Q 036593 221 QFSGR-LPSTIGHSLPNIEYLTLAINNLIGTI-PDSLTNASKLIGLDLGSNSFSGH-IPNTFGNLRHLNVLSIRTNNLTT 297 (574)
Q Consensus 221 ~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~ 297 (574)
...-. --..+.+.+|++..+.+..|.+.+.. ...+..++.+..|.++.+++.++ ..+.+..++.|..|+++++++.+
T Consensus 184 ~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 184 LEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 21100 00111224566666666666554332 23344566666777777776543 23456777788888887777665
Q ss_pred cCCCCccccccccccCCCCCcEEEcc
Q 036593 298 ESSSADQWSFLSSLTNCRKLSYLVLD 323 (574)
Q Consensus 298 ~~~~~~~~~~~~~l~~~~~L~~L~l~ 323 (574)
.-.... ...-.++.+++++.|+=+
T Consensus 264 ~l~~~e--rr~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 264 PLRGGE--RRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cccCCc--ceEEEEeeccceEEecCc
Confidence 322211 122235677777777644
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.6e-08 Score=86.66 Aligned_cols=250 Identities=21% Similarity=0.270 Sum_probs=155.1
Q ss_pred cCCCCccEEeCCCCceeecCCCC----ccCCCcCceEEccCCccccc--CCCCccccccccccCCCCCcEEEccCCCCCC
Q 036593 256 TNASKLIGLDLGSNSFSGHIPNT----FGNLRHLNVLSIRTNNLTTE--SSSADQWSFLSSLTNCRKLSYLVLDSNPLGG 329 (574)
Q Consensus 256 ~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 329 (574)
..+..+..++++||.+......+ +.+-.+|+..+++.--.... .......-+...+.+||.|+.++++.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34678899999999886544333 44556777777655321111 1111111245567889999999999998876
Q ss_pred CCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCcc-------------ccCCCCeEecc
Q 036593 330 ILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVG-------------TLQQLQGLSLE 396 (574)
Q Consensus 330 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------~~~~L~~L~l~ 396 (574)
..+.....+ +.+-+.|++|.+++|.+.......++ +-|.|+++...
T Consensus 107 ~~~e~L~d~---------------------is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 107 EFPEELGDL---------------------ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred ccchHHHHH---------------------HhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 655544433 45668899999999987644332222 12455555555
Q ss_pred CCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccC-----CccccCCCCCCeEeCCCCcceec--
Q 036593 397 DNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSI-----PSSLWSLEYILEINLSSNSLNDS-- 469 (574)
Q Consensus 397 ~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~L~~~~l~~~-- 469 (574)
.|++.. .| .......+..-.+|+++.+.+|.|.... ...+..+.+|+.|++.+|.++..
T Consensus 166 rNRlen-gs-------------~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 166 RNRLEN-GS-------------KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred cchhcc-Cc-------------HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence 555441 00 0011122333368999999999886331 12345678999999999987543
Q ss_pred --CCccccCCCCCCEEeCCCCcccccCccc----c--cCCCCCCEeeCCCCcccccCCcc-------ccCCcCCCeeeCC
Q 036593 470 --LPSNVQKLKVLRVLDLSRNQLSGNIPST----I--GALVDLETLSLASNQFQGPIPES-------VGSLISLESLDLS 534 (574)
Q Consensus 470 --~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~--~~~~~L~~L~l~~n~~~~~~~~~-------l~~~~~L~~L~l~ 534 (574)
+...+...+.|+.|.+..|-++...... | ...|+|..|...+|.+.+..... -..+|-|..+.+.
T Consensus 232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~n 311 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERN 311 (388)
T ss_pred HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHc
Confidence 3345566678999999999876443322 2 12588999999999655421111 1355778888889
Q ss_pred CCcccc
Q 036593 535 GNNFSG 540 (574)
Q Consensus 535 ~n~~~~ 540 (574)
||.+..
T Consensus 312 gNr~~E 317 (388)
T COG5238 312 GNRIKE 317 (388)
T ss_pred cCcchh
Confidence 998864
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2e-08 Score=100.07 Aligned_cols=181 Identities=25% Similarity=0.214 Sum_probs=90.0
Q ss_pred CCCccCCCCCcEEEccCCcccccCchhhcCC-CCCCEEEccCC--cCccCCCcc---ccC---CCCCCEEEccCCccccc
Q 036593 59 PPHLGNLSFLMSLDVTLNNFYGHLPNELGKL-GRLKFISFSFN--KLSGSIPTW---IGV---LSKLQIMSLRNNNITGP 129 (574)
Q Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~-~~L~~L~l~~~--~~~~~~~~~---~~~---l~~L~~L~l~~~~~~~~ 129 (574)
|=.+..++.||+|.+.+|.+.. ...+..+ ..|+.|...+. .+.++.... +.+ .-.|.+.++++|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 4446678888888888888753 1112221 12333322211 011111111 111 124555666666655 4
Q ss_pred CCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhccc
Q 036593 130 IPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNI 209 (574)
Q Consensus 130 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~ 209 (574)
+...+.-++.++.|+|++|.+... ..+..|++|++||++.|.+.....-...++. |+.|.+.+|.++.. ..+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhh
Confidence 445555566666666666666522 2466666666666666655533222233333 66666666655433 334556
Q ss_pred CCCcEEEcccCcccccCCchhhcCCCCcCeeecccccc
Q 036593 210 STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL 247 (574)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 247 (574)
++|+.||+++|-+.+.-.-.....+..|+.|.+.+|.+
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66666666666554222112222344555555555543
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.3e-08 Score=76.96 Aligned_cols=136 Identities=26% Similarity=0.274 Sum_probs=86.7
Q ss_pred CCCeEECCCCeecccCCc---cccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEe
Q 036593 431 SLRELRLGSNKLTSSIPS---SLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETL 507 (574)
Q Consensus 431 ~L~~L~l~~n~~~~~~~~---~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 507 (574)
.+-.++|+.|++. -+++ .+.....|+..+|++|.+.+..+..-...+.++.+++++|.+. ..|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3455667777664 2222 2334456677778888776554444455567788888888887 445557788888888
Q ss_pred eCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCCC
Q 036593 508 SLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKG 570 (574)
Q Consensus 508 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~~ 570 (574)
+++.|.+. ..|..+..+.+|-.|+..+|.+. .++.++-.-...-.+++.++++.++=|.++
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 88888887 56666666777788888888776 334332222333444567777777766554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.9e-08 Score=91.84 Aligned_cols=106 Identities=21% Similarity=0.160 Sum_probs=52.9
Q ss_pred CCCCCCeEECCCCeeccc--CCccccCCCCCCeEeCCCCcce-ec----CCccccCCCCCCEEeCCCCccc-ccCccccc
Q 036593 428 SLTSLRELRLGSNKLTSS--IPSSLWSLEYILEINLSSNSLN-DS----LPSNVQKLKVLRVLDLSRNQLS-GNIPSTIG 499 (574)
Q Consensus 428 ~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~L~~~~l~-~~----~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~ 499 (574)
+++.|+.+++.+|..... +.....+++.|+++.+++|... +. ....-..+..|+.+.+++|+.. +.....+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 455566666655543211 2223334566666666655431 11 1112234566777777777653 23334556
Q ss_pred CCCCCCEeeCCCCccc-ccCC-ccccCCcCCCeeeC
Q 036593 500 ALVDLETLSLASNQFQ-GPIP-ESVGSLISLESLDL 533 (574)
Q Consensus 500 ~~~~L~~L~l~~n~~~-~~~~-~~l~~~~~L~~L~l 533 (574)
.|++|+.+++-+|+-. .... ..-.++|+++...+
T Consensus 424 ~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 6777777777777432 2111 22245556555433
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.9e-06 Score=68.12 Aligned_cols=126 Identities=13% Similarity=0.176 Sum_probs=71.5
Q ss_pred CCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCC
Q 036593 422 IPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGAL 501 (574)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 501 (574)
...+|.++++|+.+.+.. .+......+|..+.+|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 346788888999999875 455566778888888999998775 6556667788888899998876 4444556678888
Q ss_pred CCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCC
Q 036593 502 VDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLK 553 (574)
Q Consensus 502 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 553 (574)
++|+.+.+..+ +.......|.++ .|+.+.+.+ .+..+....|.++++|+
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 89999998765 554556678887 888888876 44445556777777764
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=76.63 Aligned_cols=132 Identities=20% Similarity=0.309 Sum_probs=73.0
Q ss_pred cCCCCeEeccCCcccc--cCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCC-eecccCCccccCCCCCCeEeCCC
Q 036593 387 LQQLQGLSLEDNNLEG--SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSN-KLTSSIPSSLWSLEYILEINLSS 463 (574)
Q Consensus 387 ~~~L~~L~l~~~~~~~--~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~L~~ 463 (574)
+.++++|++++|.++. .+|.+++.|.+++|.-...+|..+ .++|+.|++++| .+. .+| ++|+.|++.+
T Consensus 51 ~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceEEeCC
Confidence 4455555555554442 345566666666643222445444 357888888888 332 222 4577777776
Q ss_pred CcceecCCccccCCCCCCEEeCCCCc-ccc-cCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCC
Q 036593 464 NSLNDSLPSNVQKLKVLRVLDLSRNQ-LSG-NIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 536 (574)
Q Consensus 464 ~~l~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 536 (574)
+..... . .++ ++|+.|.+.+++ ... ..+..+ .++|++|++++|... ..|..++ .+|+.|+++.+
T Consensus 122 n~~~~L-~-~LP--ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 122 SATDSI-K-NVP--NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCCccc-c-cCc--chHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 654321 1 111 457777775432 110 011111 257888888888866 4555555 47888888766
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.4e-06 Score=70.10 Aligned_cols=82 Identities=30% Similarity=0.319 Sum_probs=36.0
Q ss_pred CCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccC-CccccCCcCCCeeeCC
Q 036593 456 ILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI-PESVGSLISLESLDLS 534 (574)
Q Consensus 456 L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~ 534 (574)
...++|++|.+... ..|+.++.|.+|.+++|.|+.+.+..-.-+++|+.|.+.+|.+.... -..+..||+|+.|.+-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 33444555544322 22444455555555555554444333333444555555555443211 1223444555555555
Q ss_pred CCccc
Q 036593 535 GNNFS 539 (574)
Q Consensus 535 ~n~~~ 539 (574)
+|+++
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 55544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.1e-07 Score=95.13 Aligned_cols=196 Identities=19% Similarity=0.225 Sum_probs=93.1
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCch-------------hh--cCCCCCCEEEccCCc-CccCC
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPN-------------EL--GKLGRLKFISFSFNK-LSGSI 106 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-------------~~--~~~~~L~~L~l~~~~-~~~~~ 106 (574)
.+.++++.+..+.........+.. |+++.|.+....+.... .+ ..-.+|++|+++|.. +....
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W 139 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW 139 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence 455666665555444344344433 66666665432211000 00 011456666666643 22233
Q ss_pred Ccccc-CCCCCCEEEccCCcccc-cCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCc-CCCcccc
Q 036593 107 PTWIG-VLSKLQIMSLRNNNITG-PIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQD-QIPTEIG 183 (574)
Q Consensus 107 ~~~~~-~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~ 183 (574)
+..++ .+|+|++|.+.+-.+.. .......++|+|..||++++++.. + .+++++++|++|.+.+-.+.. .....+-
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 44444 36666666666644431 112223456666666666666652 2 456666666666665543332 1112344
Q ss_pred CCCCCCEEEccCCcccccC------chhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeee
Q 036593 184 NLQNLESLALGTNNLSGLI------PPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241 (574)
Q Consensus 184 ~l~~L~~L~l~~~~~~~~~------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 241 (574)
.+++|+.||++........ -+.-..+|+|+.||.+++.+.+.+.+.+...-|+|+.+.
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 5566666666554332111 011113456666666655555444444443344444433
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.6e-05 Score=65.52 Aligned_cols=101 Identities=16% Similarity=0.211 Sum_probs=42.7
Q ss_pred ccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCC
Q 036593 424 PCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVD 503 (574)
Q Consensus 424 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 503 (574)
..|.++++|+.+.+.++ +......+|..+++|+.+.+.+ .+.......|..+++|+.+++..+ +.......|.++ .
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 44556666666666553 4434445566665666666654 333344445566666666666543 433444556665 6
Q ss_pred CCEeeCCCCcccccCCccccCCcCCC
Q 036593 504 LETLSLASNQFQGPIPESVGSLISLE 529 (574)
Q Consensus 504 L~~L~l~~n~~~~~~~~~l~~~~~L~ 529 (574)
|+.+.+.. .+.......|.++++|+
T Consensus 105 l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 105 LKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp --EEE-TT-B-SS----GGG------
T ss_pred ceEEEECC-CccEECCccccccccCC
Confidence 66666665 33334445566665553
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.6e-05 Score=73.56 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=14.5
Q ss_pred CCCCeEECCCCeecccCCccccCCCCCCeEeCCCC
Q 036593 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSN 464 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~ 464 (574)
++|++|++++|... ..|..+. .+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 35555555555543 2222221 35555555443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.6e-05 Score=67.31 Aligned_cols=80 Identities=24% Similarity=0.233 Sum_probs=34.2
Q ss_pred eEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecC-CccccCCCCCCEEeCCCC
Q 036593 410 HLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSL-PSNVQKLKVLRVLDLSRN 488 (574)
Q Consensus 410 ~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~l~~L~~L~l~~n 488 (574)
.+++++|.+. -...|..+++|..|.+.+|+|+...+.--..++.|..|.+.+|.+.+.. ...+..||.|++|.+-+|
T Consensus 46 ~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 46 AIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred eecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 4444444442 1123444444555555555554444433333444444445444443321 122334444444444444
Q ss_pred ccc
Q 036593 489 QLS 491 (574)
Q Consensus 489 ~~~ 491 (574)
++.
T Consensus 124 pv~ 126 (233)
T KOG1644|consen 124 PVE 126 (233)
T ss_pred chh
Confidence 443
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.5e-06 Score=68.45 Aligned_cols=110 Identities=25% Similarity=0.312 Sum_probs=83.2
Q ss_pred CCCCeEeCCCCcceec--CCccccCCCCCCEEeCCCCcccccCcccccC-CCCCCEeeCCCCcccccCCccccCCcCCCe
Q 036593 454 EYILEINLSSNSLNDS--LPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA-LVDLETLSLASNQFQGPIPESVGSLISLES 530 (574)
Q Consensus 454 ~~L~~L~L~~~~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 530 (574)
..+..++|++|++... .+..+.....|+..+|++|.+.. .|..|.. .+.++.|++++|++. ..|..+..++.|+.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3567788999987432 23345566788889999999984 4444444 568999999999999 67888999999999
Q ss_pred eeCCCCcccccCCcCcccCCCCCeEeccCCccccccC
Q 036593 531 LDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIP 567 (574)
Q Consensus 531 L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 567 (574)
|+++.|++. ..|..+..+.++-.|+..+|.+ .+||
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~-~eid 139 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR-AEID 139 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCcc-ccCc
Confidence 999999998 5677777777777777776653 3444
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.72 E-value=2e-05 Score=50.07 Aligned_cols=36 Identities=42% Similarity=0.650 Sum_probs=14.1
Q ss_pred CCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccc
Q 036593 479 VLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQ 515 (574)
Q Consensus 479 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 515 (574)
+|++|++++|++.. ++..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444442 2222444444444444444443
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.2e-05 Score=48.58 Aligned_cols=36 Identities=42% Similarity=0.653 Sum_probs=19.3
Q ss_pred CCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 503 DLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 503 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+|++|++++|+++ .++..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4566666666665 33444556666666666666555
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=1.4e-05 Score=83.83 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=28.8
Q ss_pred ccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceE
Q 036593 279 FGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSF 345 (574)
Q Consensus 279 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 345 (574)
+.++++|+.||++........ .....+.+.-..+|.|+.||.++..+.+...+.+-..-++++.+
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred HhcccCCCeeeccccccccch--HHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 334555555555443322221 01112333344566777777776655544333333333333333
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=5.3e-06 Score=73.64 Aligned_cols=99 Identities=28% Similarity=0.326 Sum_probs=55.1
Q ss_pred CCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccC-CccccCCcCCCeee
Q 036593 454 EYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI-PESVGSLISLESLD 532 (574)
Q Consensus 454 ~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~ 532 (574)
.+.++|++.+|.+.++. ....|+.|++|.|+-|.|+.. ..+..|++|++|+|+.|.|.+.. -..+.++|+|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34455566666555432 134566666666666666632 23566667777777776665321 13356666677776
Q ss_pred CCCCcccccCCc-----CcccCCCCCeEe
Q 036593 533 LSGNNFSGKIPK-----SLEALSHLKQFN 556 (574)
Q Consensus 533 l~~n~~~~~~~~-----~l~~l~~L~~l~ 556 (574)
|..|+=.+..+. .++-+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 666654432221 245566666664
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00013 Score=64.75 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=16.6
Q ss_pred CCCCCEeeCCCCcccc-cCCccccCCcCCCeeeCCCCccc
Q 036593 501 LVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 501 ~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+|+|++|++++|++.. .....+..+.+|..|++..|..+
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 3555555555554442 11122333344445555555444
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=1.3e-05 Score=82.88 Aligned_cols=39 Identities=23% Similarity=0.205 Sum_probs=24.6
Q ss_pred CCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCC
Q 036593 281 NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSN 325 (574)
Q Consensus 281 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 325 (574)
.+++|+.+.+..+.-.... .+......++.|+.|+++++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~------~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDD------SLDALALKCPNLEELDLSGC 224 (482)
T ss_pred hCchhhHhhhcccccCChh------hHHHHHhhCchhheecccCc
Confidence 4678888888776432211 12334667888888888763
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00021 Score=63.50 Aligned_cols=86 Identities=21% Similarity=0.246 Sum_probs=46.5
Q ss_pred CcCCCCCCeEECCCC--eecccCCccccCCCCCCeEeCCCCcceec-CCccccCCCCCCEEeCCCCcccccCc---cccc
Q 036593 426 LASLTSLRELRLGSN--KLTSSIPSSLWSLEYILEINLSSNSLNDS-LPSNVQKLKVLRVLDLSRNQLSGNIP---STIG 499 (574)
Q Consensus 426 ~~~~~~L~~L~l~~n--~~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~ 499 (574)
+..+|+|+.|.++.| .+.+.+..-...+++|+++++++|.+... ....+..+++|.+|++.+|..+.... ..|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 445666677777766 44444444444556677777777666432 12234556666677777666553211 1334
Q ss_pred CCCCCCEeeCCC
Q 036593 500 ALVDLETLSLAS 511 (574)
Q Consensus 500 ~~~~L~~L~l~~ 511 (574)
-+++|++|+-..
T Consensus 141 ll~~L~~LD~~d 152 (260)
T KOG2739|consen 141 LLPSLKYLDGCD 152 (260)
T ss_pred Hhhhhccccccc
Confidence 456665554433
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=3.8e-05 Score=79.48 Aligned_cols=133 Identities=20% Similarity=0.050 Sum_probs=73.2
Q ss_pred hcCCCCCCEEEccCCcCccC--CCccccCCCCCCEEEccCC-cccccC----CcCCCCCCCCceeeccccc-CcccCchh
Q 036593 86 LGKLGRLKFISFSFNKLSGS--IPTWIGVLSKLQIMSLRNN-NITGPI----PNSLFNLSKLEMLQASFNV-IDGNIPSG 157 (574)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~-~~~~~~~~ 157 (574)
...++.|+.+.+.++.-... .......+++|+.|+++++ ...... ......+++|+.++++.+. ++...-..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 34467777777777643222 2234556778888887763 111111 1123456777888887776 44333333
Q ss_pred cc-CCCCCCEEEccCCc-CCcCCC-ccccCCCCCCEEEccCCccc-c-cCchhhcccCCCcEEEcc
Q 036593 158 IG-NLSNLFDLDLRHNN-LQDQIP-TEIGNLQNLESLALGTNNLS-G-LIPPAIFNISTIRVLNLH 218 (574)
Q Consensus 158 l~-~l~~L~~L~l~~~~-~~~~~~-~~l~~l~~L~~L~l~~~~~~-~-~~~~~l~~~~~L~~L~l~ 218 (574)
++ .+++|++|.+..+. +++... .....++.|++|+++.+... + ........+++++.+.+.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 33 37788888877665 443322 23355677888888776542 1 122223345666655443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=3.1e-05 Score=68.88 Aligned_cols=100 Identities=24% Similarity=0.225 Sum_probs=73.4
Q ss_pred CCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccC-cccccCCCCCCEe
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNI-PSTIGALVDLETL 507 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L 507 (574)
+.+.+.|++.+|.+. +......++.|+.|.|+-|.|+...+ +..|++|+.|.|..|.|.+.. ...+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~--DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD--DISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCcc--HHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 457788899999885 33556678999999999999876544 788999999999999886432 2467889999999
Q ss_pred eCCCCcccccCC-----ccccCCcCCCeee
Q 036593 508 SLASNQFQGPIP-----ESVGSLISLESLD 532 (574)
Q Consensus 508 ~l~~n~~~~~~~-----~~l~~~~~L~~L~ 532 (574)
.|..|.--+..+ ..+.-+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999986544322 2345556666664
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=2.2e-05 Score=78.74 Aligned_cols=117 Identities=28% Similarity=0.294 Sum_probs=53.2
Q ss_pred ccCcCCCCCCeEECCCCeeccc----CCcccc----CCCCCCeEeCCCCcceec----CCccccCCCC-CCEEeCCCCcc
Q 036593 424 PCLASLTSLRELRLGSNKLTSS----IPSSLW----SLEYILEINLSSNSLNDS----LPSNVQKLKV-LRVLDLSRNQL 490 (574)
Q Consensus 424 ~~~~~~~~L~~L~l~~n~~~~~----~~~~~~----~~~~L~~L~L~~~~l~~~----~~~~~~~l~~-L~~L~l~~n~~ 490 (574)
..+.....++.++++.|.+... .+.++. ...++++|++++|.++.. ....+...+. +..+++.+|.+
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 3344466777777777766311 112222 244555666665555422 1112223333 44455555554
Q ss_pred cccCc----ccccCC-CCCCEeeCCCCcccccC----CccccCCcCCCeeeCCCCcccc
Q 036593 491 SGNIP----STIGAL-VDLETLSLASNQFQGPI----PESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 491 ~~~~~----~~~~~~-~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
.+... ..+..+ +.+++++++.|.++... ...+.+++.++.+.++.|++..
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 42211 122333 44555555555555422 2233444455555555555543
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.0061 Score=31.96 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=13.0
Q ss_pred CCCeEeccCCccccccCCC
Q 036593 551 HLKQFNVSQNMLEGEIPVK 569 (574)
Q Consensus 551 ~L~~l~l~~n~~~~~~p~~ 569 (574)
+|+.||+++|+++ .||++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp TESEEEETSSEES-EEGTT
T ss_pred CccEEECCCCcCE-eCChh
Confidence 4677777777777 77766
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.00012 Score=73.62 Aligned_cols=88 Identities=39% Similarity=0.461 Sum_probs=44.8
Q ss_pred CCCCCeEECCCCeeccc----CCccccCCCC-CCeEeCCCCcceec----CCccccCC-CCCCEEeCCCCcccccCc---
Q 036593 429 LTSLRELRLGSNKLTSS----IPSSLWSLEY-ILEINLSSNSLNDS----LPSNVQKL-KVLRVLDLSRNQLSGNIP--- 495 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~----~~~~~~~~~~-L~~L~L~~~~l~~~----~~~~~~~l-~~L~~L~l~~n~~~~~~~--- 495 (574)
..+++.|.+.+|.++.. ...++...++ +.+|++.+|.+.+. ....+..+ ..+++++++.|.+.+...
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 45566666666655422 1122333344 55566666665433 12233333 455666666666653322
Q ss_pred -ccccCCCCCCEeeCCCCcccc
Q 036593 496 -STIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 496 -~~~~~~~~L~~L~l~~n~~~~ 516 (574)
..+..++.++++.+++|.++.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 334445666666666666554
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.0045 Score=52.93 Aligned_cols=84 Identities=17% Similarity=0.168 Sum_probs=47.6
Q ss_pred CCCeEeCCCCcceecCCccccCCCCCCEEeCCCCccc-ccCccccc-CCCCCCEeeCCCC-cccccCCccccCCcCCCee
Q 036593 455 YILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS-GNIPSTIG-ALVDLETLSLASN-QFQGPIPESVGSLISLESL 531 (574)
Q Consensus 455 ~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~-~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L 531 (574)
.++.++-+++.|.....+.+..++.++.|.+.+|.-- +-..+.++ -.++|+.|+|++| +|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3455566666665555555666666666666666421 11111111 2467777777777 4555555556666777777
Q ss_pred eCCCCcc
Q 036593 532 DLSGNNF 538 (574)
Q Consensus 532 ~l~~n~~ 538 (574)
.+.+=+.
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 7665443
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.008 Score=51.49 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=55.7
Q ss_pred CcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCccccc-Cchhhc-CCCCCCEEEccCC-cCccCCCccccCCCCCCE
Q 036593 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGH-LPNELG-KLGRLKFISFSFN-KLSGSIPTWIGVLSKLQI 118 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~ 118 (574)
-.++.++.+++.|..+-...+.+++.++.|.+.+|.-.+. -...++ -.++|+.|++++| +|++.--..+.++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 4577888888877767777778888888888887764431 111122 3577888888877 466666666777777777
Q ss_pred EEccCC
Q 036593 119 MSLRNN 124 (574)
Q Consensus 119 L~l~~~ 124 (574)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 777553
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.032 Score=29.20 Aligned_cols=11 Identities=45% Similarity=0.525 Sum_probs=4.8
Q ss_pred CcEEEccCCcc
Q 036593 68 LMSLDVTLNNF 78 (574)
Q Consensus 68 L~~L~L~~~~~ 78 (574)
|++|++++|.+
T Consensus 2 L~~Ldls~n~l 12 (22)
T PF00560_consen 2 LEYLDLSGNNL 12 (22)
T ss_dssp ESEEEETSSEE
T ss_pred ccEEECCCCcC
Confidence 34444444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.092 Score=25.40 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=5.6
Q ss_pred CCCeEeccCCcc
Q 036593 551 HLKQFNVSQNML 562 (574)
Q Consensus 551 ~L~~l~l~~n~~ 562 (574)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 556666666663
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=88.46 E-value=0.097 Score=28.00 Aligned_cols=13 Identities=54% Similarity=0.723 Sum_probs=4.6
Q ss_pred CCCEEeCCCCccc
Q 036593 479 VLRVLDLSRNQLS 491 (574)
Q Consensus 479 ~L~~L~l~~n~~~ 491 (574)
+|++|+|++|++.
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444433
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.36 E-value=0.01 Score=51.88 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=52.0
Q ss_pred hcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCC
Q 036593 86 LGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLF 165 (574)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 165 (574)
+..+...++||++.+++. .+-..|+.++.|..|+++.+.+. ..|..+.....++++++..|..+ ..|.++++.++++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 444555556666655544 33444555566666666666665 56666666666666666666554 5666666666777
Q ss_pred EEEccCCcCC
Q 036593 166 DLDLRHNNLQ 175 (574)
Q Consensus 166 ~L~l~~~~~~ 175 (574)
+++...+.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 6666665443
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.62 E-value=0.019 Score=50.27 Aligned_cols=86 Identities=28% Similarity=0.312 Sum_probs=51.4
Q ss_pred cCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCe
Q 036593 475 QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQ 554 (574)
Q Consensus 475 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 554 (574)
......+.||++.|++. ..-.-|+-++.|..|+++.|++. ..|..+.....+..++...|..+ ..|-.+...|.++.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 34455566666666554 22233445566666666666666 56666666666666666666655 45666666666666
Q ss_pred EeccCCccc
Q 036593 555 FNVSQNMLE 563 (574)
Q Consensus 555 l~l~~n~~~ 563 (574)
++..+|++.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 666666643
|
|
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=87.34 E-value=3.9 Score=40.36 Aligned_cols=252 Identities=17% Similarity=0.131 Sum_probs=121.6
Q ss_pred CCcEEEccCCCCCCCCChhhhhhcc--ccceEEeccccccc---cCCccccCCCCCcEEECcCCCCc--------ccCCc
Q 036593 316 KLSYLVLDSNPLGGILPPLIGNFSA--SLQSFYAYECKLGG---SIPKEIGNLRGLILLTLDFNDLN--------GTIPT 382 (574)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~--------~~~~~ 382 (574)
.+.+++++.+...+-.+........ -++.++.+...+.. .-+...+.-++++..+++.|... +....
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 4566666666655544433322221 22233333222221 12223455567777777766433 12223
Q ss_pred CccccCCCCeEeccCCcccccCCCCCc------------eEEccCCeeeec--CCccCcCCCCCCeEECCCCeecccCCc
Q 036593 383 SVGTLQQLQGLSLEDNNLEGSIPYDLC------------HLELNGNKLSGH--IPPCLASLTSLRELRLGSNKLTSSIPS 448 (574)
Q Consensus 383 ~~~~~~~L~~L~l~~~~~~~~~~~~l~------------~l~l~~~~l~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~ 448 (574)
.|+.-+++ +|++..+....+-+.++- ++++..|...+. ...+. +=.++++|...+|...+....
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci-~g~R~q~l~~rdnnldgeg~~ 372 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACI-FGQRVQVLLQRDNNLDGEGGA 372 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccc-cceeeeEeecccccccccccc
Confidence 34444666 777777665433222111 444444443321 11111 123578888888776655332
Q ss_pred --cccCCCCCCeEeCCCCcc---eecC----Ccc--ccCCCCCCEEeCCCCcccccC---cccccCCCCCCEeeCCCCcc
Q 036593 449 --SLWSLEYILEINLSSNSL---NDSL----PSN--VQKLKVLRVLDLSRNQLSGNI---PSTIGALVDLETLSLASNQF 514 (574)
Q Consensus 449 --~~~~~~~L~~L~L~~~~l---~~~~----~~~--~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l~~n~~ 514 (574)
.....++.+.+++.+-.- .... +.. -....-+..+.++.|...... ...+.+-+.+..|++++|..
T Consensus 373 vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 373 VGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGM 452 (553)
T ss_pred ccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCc
Confidence 344456677777644322 1110 000 011223556667766655221 12234456788888888876
Q ss_pred cc----cCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCCCCC
Q 036593 515 QG----PIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSF 572 (574)
Q Consensus 515 ~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~~~~ 572 (574)
.. .+|.+++....++.+..+.|..+. .++.....=..+++.+...+...|.--.|
T Consensus 453 gd~gap~lpkalq~n~rlr~ipds~n~p~~---~gl~p~~~~~p~n~~rs~~~~p~Pv~daf 511 (553)
T KOG4242|consen 453 GDGGAPPLPKALQSNCRLRPIPDSLNLPED---PGLGPRNEERPLNLQRSPVLKPRPVLDAF 511 (553)
T ss_pred ccCCCCcCccccCCCCccCCCCCCCCCccc---cccchhhhhcccccccCCcccCCCccccC
Confidence 64 345566666677777777666553 22222111222333366666666654444
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=86.30 E-value=0.63 Score=25.33 Aligned_cols=13 Identities=77% Similarity=0.833 Sum_probs=5.7
Q ss_pred CCCEEeCCCCccc
Q 036593 479 VLRVLDLSRNQLS 491 (574)
Q Consensus 479 ~L~~L~l~~n~~~ 491 (574)
+|+.|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=86.30 E-value=0.63 Score=25.33 Aligned_cols=13 Identities=77% Similarity=0.833 Sum_probs=5.7
Q ss_pred CCCEEeCCCCccc
Q 036593 479 VLRVLDLSRNQLS 491 (574)
Q Consensus 479 ~L~~L~l~~n~~~ 491 (574)
+|+.|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 574 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 8e-46 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-33 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-45 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 3e-33 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 4e-17 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 7e-17 | ||
| 3cig_A | 697 | Crystal Structure Of Mouse Tlr3 Ectodomain Length = | 9e-10 | ||
| 3j0a_A | 844 | Homology Model Of Human Toll-Like Receptor 5 Fitted | 8e-08 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 6e-06 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 3e-05 | ||
| 3kj4_A | 286 | Structure Of Rat Nogo Receptor Bound To 1d9 Antagon | 2e-05 | ||
| 3zyj_A | 440 | Netring1 In Complex With Ngl1 Length = 440 | 2e-05 | ||
| 4arn_A | 279 | Crystal Structure Of The N-terminal Domain Of Droso | 6e-05 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 1e-04 | ||
| 3v47_A | 455 | Crystal Structure Of The N-Tetminal Fragment Of Zeb | 1e-04 | ||
| 3v47_A | 455 | Crystal Structure Of The N-Tetminal Fragment Of Zeb | 2e-04 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 2e-04 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 2e-04 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 2e-04 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 3e-04 | ||
| 2z63_A | 570 | Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A | 4e-04 | ||
| 2o6s_A | 208 | Structural Diversity Of The Hagfish Variable Lympho | 4e-04 | ||
| 2omy_A | 461 | Crystal Structure Of Inla S192n/hec1 Complex Length | 5e-04 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 6e-04 | ||
| 2o6r_A | 177 | Structural Diversity Of The Hagfish Variable Lympho | 6e-04 | ||
| 4fmz_A | 347 | Crystal Structure Of An Internalin (Inlf) From List | 7e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697 | Back alignment and structure |
|
| >pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286 | Back alignment and structure |
|
| >pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440 | Back alignment and structure |
|
| >pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455 | Back alignment and structure |
|
| >pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570 | Back alignment and structure |
|
| >pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208 | Back alignment and structure |
|
| >pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177 | Back alignment and structure |
|
| >pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 429 bits (1105), Expect = e-142
Identities = 166/536 (30%), Positives = 243/536 (45%), Gaps = 20/536 (3%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106
L++S IP LG+ S L LD++ N G + LK ++ S N+ G I
Sbjct: 205 LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 107 PTWIGVLSKLQIMSLRNNNITGPIPNSLF-NLSKLEMLQASFNVIDGNIPSGIGNLSNLF 165
P L LQ +SL N TG IP+ L L L S N G +P G+ S L
Sbjct: 264 PPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 166 DLDLRHNNLQDQIPTE-IGNLQNLESLALGTNNLSGLIPPAIFNIST-IRVLNLHSNQFS 223
L L NN ++P + + ++ L+ L L N SG +P ++ N+S + L+L SN FS
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 224 GRLPSTIGHS-LPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL 282
G + + + ++ L L N G IP +L+N S+L+ L L N SG IP++ G+L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 283 RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASL 342
L L + N L L + L L+LD N L G +P + N + +L
Sbjct: 442 SKLRDLKLWLNMLE--------GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT-NL 492
Query: 343 QSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG 402
+L G IPK IG L L +L L N +G IP +G + L L L N G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 403 SIPYDLCHL--ELNGNKLSGHIPPCLASLTSLRELRLGSN--KLTSSIPSSLWSLEYILE 458
+IP + ++ N ++G + + +E N + L L
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 459 INLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI 518
N++S + LD+S N LSG IP IG++ L L+L N G I
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 519 PESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
P+ VG L L LDLS N G+IP+++ AL+ L + ++S N L G IP G F+
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 367 bits (944), Expect = e-118
Identities = 167/573 (29%), Positives = 246/573 (42%), Gaps = 72/573 (12%)
Query: 31 SWVGISCDSRHQRVKALNLSGMGL---GGTIP-----------------------PHLGN 64
++ G++C V +++LS L +
Sbjct: 41 TFDGVTCRDDK--VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKC 98
Query: 65 LSFLMSLDVTLNNFYGHLP--NELGKLGRLKFISFSFNKLSGSIPT-WIGVLSKLQIMSL 121
+ L SLD++ N+ G + LG LKF++ S N L L+ L+++ L
Sbjct: 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158
Query: 122 RNNNITGPIPNSLF---NLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQI 178
N+I+G +L+ L S N I G++ + NL LD+ NN I
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 216
Query: 179 PTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIE 238
P +G+ L+ L + N LSG AI + +++LN+ SNQF G +P L +++
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQ 272
Query: 239 YLTLAINNLIGTIPDSLT-NASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTT 297
YL+LA N G IPD L+ L GLDL N F G +P FG+ L L++ +NN +
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 298 ESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIP 357
E +L R L L L N G LP + N SASL + G I
Sbjct: 333 ELPM-------DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 358 KEIGN--LRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNG 415
+ L L L N G IP ++ +L L L N L
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL--------------- 430
Query: 416 NKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQ 475
SG IP L SL+ LR+L+L N L IP L ++ + + L N L +PS +
Sbjct: 431 ---SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 535
L + LS N+L+G IP IG L +L L L++N F G IP +G SL LDL+
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 536 NNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568
N F+G IP ++ S ++ N + G+ V
Sbjct: 548 NLFNGTIPAAMFKQS----GKIAANFIAGKRYV 576
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 1e-52
Identities = 71/254 (27%), Positives = 105/254 (41%), Gaps = 7/254 (2%)
Query: 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSG 104
+ L L L G IP L N + L + ++ N G +P +G+L L + S N SG
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNL 164
+IP +G L + L N G IP ++F S N I G I N
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA----NFIAGKRYVYIKNDGMK 584
Query: 165 FDLDLRHN--NLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222
+ N Q ++ L + + G P N ++ L++ N
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 223 SGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL 282
SG +P IG S+P + L L N++ G+IPD + + L LDL SN G IP L
Sbjct: 645 SGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 283 RHLNVLSIRTNNLT 296
L + + NNL+
Sbjct: 704 TMLTEIDLSNNNLS 717
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-25
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 12/174 (6%)
Query: 410 HLELNGNKLS---GHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSL 466
++L+ L+ + L SLT L L L ++ + S+ + ++LS NSL
Sbjct: 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSL 112
Query: 467 NDSLPSNVQ--KLKVLRVLDLSRNQLSGNIPSTIGA-LVDLETLSLASNQFQGPIPESV- 522
+ + + L+ L++S N L + G L LE L L++N G
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172
Query: 523 --GSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
L+ L +SGN SG + + +L+ +VS N IP G
Sbjct: 173 LSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSA 224
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 37/145 (25%), Positives = 63/145 (43%)
Query: 13 SHLAIMLLYLLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLD 72
+ + + + +R N++ GG P N +M LD
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 73 VTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPN 132
++ N G++P E+G + L ++ N +SGSIP +G L L I+ L +N + G IP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 133 SLFNLSKLEMLQASFNVIDGNIPSG 157
++ L+ L + S N + G IP
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 499 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVS 558
+ ++ S N + S+ SL LESL LS ++ +G + + + L ++S
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108
Query: 559 QNMLEGEIPVKGSFKN 574
+N L G + S +
Sbjct: 109 RNSLSGPVTTLTSLGS 124
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 267 bits (685), Expect = 9e-82
Identities = 91/556 (16%), Positives = 178/556 (32%), Gaps = 51/556 (9%)
Query: 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSG 104
ALN G N +F LD + L GR+ +S SG
Sbjct: 40 DALNGKNWSQQGFGTQPGANWNFNKELD----MWGAQPGVSLNSNGRVTGLSLEGFGASG 95
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGP----IPNSLFNLSKLEMLQASFNVIDGNIPSGIG- 159
+P IG L++L++++L ++ P + E Q
Sbjct: 96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155
Query: 160 -NLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLH 218
+ S+L + + Q I + +NN++ + A+ ++ +R +
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG 214
Query: 219 SNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNT 278
++ F E T N L +++ + +P
Sbjct: 215 NSPFVAENICEAW------ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268
Query: 279 FGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL-GGILPPLIGN 337
L + ++++ N + D W L+ K+ + + N L + +
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328
Query: 338 FSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLED 397
L +L G +P G+ L L L +N + G +Q++ LS
Sbjct: 329 MK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386
Query: 398 NNLEGSIPYDLC--------HLELNGNKLSG-------HIPPCLASLTSLRELRLGSNKL 442
N L+ IP ++ + N++ + P ++ + L +N++
Sbjct: 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445
Query: 443 TSSIPSSLWSLEYILEINLSSNSLND-------SLPSNVQKLKVLRVLDLSRNQLSGNIP 495
+ + + INL N L + N + +L +DL N+L+
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505
Query: 496 S-TIGALVDLETLSLASNQFQGPIPESVGSLISLESL------DLSGNNFSGKIPKSLEA 548
L L + L+ N F P + +L+ D GN + P+ +
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564
Query: 549 LSHLKQFNVSQNMLEG 564
L Q + N +
Sbjct: 565 CPSLTQLQIGSNDIRK 580
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 7e-81
Identities = 85/568 (14%), Positives = 182/568 (32%), Gaps = 65/568 (11%)
Query: 31 SWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYG----HLPNEL 86
+ G+S +S RV L+L G G G +P +G L+ L L + + P +
Sbjct: 71 AQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129
Query: 87 GKLGRLKFISFSFNKLSGSIPTWIG--VLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQ 144
+ + + S L + ++ I S K +
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189
Query: 145 ASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPP 204
N I + + L+ L + ++ + E +N E
Sbjct: 190 QLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE-----YAQQYKTEDL 243
Query: 205 AIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLI--------GTIPDSLT 256
N+ + + +++ +LP+ + +LP ++ + +A N I
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAP 302
Query: 257 NASKLIGLDLGSNSF-SGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCR 315
K+ + +G N+ + + + ++ L +L N L L + +
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE---------GKLPAFGSEI 353
Query: 316 KLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGG-SIPKEIGNLRGLILLTLDFN 374
KL+ L L N + I G +++ KL + ++ + + +N
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTE-QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412
Query: 375 DLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRE 434
++ + L + ++ + L+ N++S ++ + L
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGI-----------NVSSINLSNNQISKFPKELFSTGSPLSS 461
Query: 435 LRLGSNKLTS-------SIPSSLWSLEYILEINLSSNSLNDSLPSNVQ--KLKVLRVLDL 485
+ L N LT + + + I+L N L L + + L L +DL
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDL 520
Query: 486 SRNQLSGNIPSTIGALVDLETLSL------ASNQFQGPIPESVGSLISLESLDLSGNNFS 539
S N S P+ L+ + N+ PE + SL L + N+
Sbjct: 521 SYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579
Query: 540 GKIPKSLEALSHLKQFNVSQNMLEGEIP 567
+ + + ++ ++ N
Sbjct: 580 K-VNEKI--TPNISVLDIKDNPNISIDL 604
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 8e-69
Identities = 68/523 (13%), Positives = 144/523 (27%), Gaps = 70/523 (13%)
Query: 47 LNLSGMGLGGTIPPHLGNLSF--LMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSG 104
M T + F L+ + + + + I N ++
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT- 196
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNL 164
+ + L+KL+ + N+ + E Q NL +L
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY-----KTEDLKWDNLKDL 251
Query: 165 FDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL--------IPPAIFNISTIRVLN 216
D+++ + ++PT + L ++ + + N I+++
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311
Query: 217 LHSNQF-SGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHI 275
+ N + + +++ + + L N L G +P + + KL L+L N +
Sbjct: 312 IGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIP 369
Query: 276 PNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLI 335
N G + LS N L + + +S + N +G +
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNI-------FDAKSVSVMSAIDFSYNEIGSVDGKNF 422
Query: 336 GNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSL 395
+ + + L N ++ T L ++L
Sbjct: 423 DP------------------LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464
Query: 396 EDNNLEG-------SIPYDLCHLE------LNGNKLSGHIPPCLA--SLTSLRELRLGSN 440
N L + + L NKL+ + +L L + L N
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN 523
Query: 441 KLTSSIPSSLWSLEYILEI------NLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNI 494
+ P+ + + + N P + L L + N + +
Sbjct: 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-V 581
Query: 495 PSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNN 537
I ++ L + N V I L +
Sbjct: 582 NEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 2e-57
Identities = 62/485 (12%), Positives = 141/485 (29%), Gaps = 87/485 (17%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106
+ Y + L L + +
Sbjct: 211 FYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265
Query: 107 PTWIGVLSKLQIMSLRNNNIT--------GPIPNSLFNLSKLEMLQASFNVI-DGNIPSG 157
PT++ L ++Q++++ N K++++ +N + + +
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325
Query: 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNL 217
+ + L L+ +N L+ ++P G+ L SL L N ++ + + L+
Sbjct: 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384
Query: 218 HSNQFSGRLPSTIGHSLPNIEYLTLAINNL-------IGTIPDSLTNASKLIGLDLGSNS 270
N+ S+ + + + N + + + + ++L +N
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
S F L+ +++ N LT ++ + + N L+ + L N L +
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK-DENENFKNTYLLTSIDLRFNKLTKL 503
Query: 331 LPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390
L L+ + L +N + PT L
Sbjct: 504 SDDF------------------------RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538
Query: 391 QGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSL 450
+G + + + GN+ P + SL +L++GSN + + +
Sbjct: 539 KGFGIRNQ------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI 585
Query: 451 WSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLA 510
+ VLD+ N S + ++ L
Sbjct: 586 --------------------------TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619
Query: 511 SNQFQ 515
++ Q
Sbjct: 620 YDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 4e-27
Identities = 46/275 (16%), Positives = 89/275 (32%), Gaps = 31/275 (11%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPN--ELGKLGRLKFISFSFNKLSG 104
LNL+ + G + +L N +PN + + + I FS+N++
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGS 416
Query: 105 -------SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDG----- 152
+ + ++L NN I+ S L + N++
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476
Query: 153 --NIPSGIGNLSNLFDLDLRHNNLQDQIPTEI--GNLQNLESLALGTNNLSGLIPPAIFN 208
+ N L +DLR N L ++ + L L + L N+ S P N
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534
Query: 209 ISTIRVLNLH------SNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLI 262
ST++ + N+ P I P++ L + +N I + + +T +
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITL-CPSLTQLQIG-SNDIRKVNEKIT--PNIS 590
Query: 263 GLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTT 297
LD+ N + + + +
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-26
Identities = 34/237 (14%), Positives = 74/237 (31%), Gaps = 18/237 (7%)
Query: 350 CKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP---- 405
G + + + L+L+ +G +P ++G L +L+ L+L + + +
Sbjct: 67 DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126
Query: 406 ------YDLCHLELNGNKLSGHIPPCLA--SLTSLRELRLGSNKLTSSIPSSLWSLEYIL 457
+ + L + + S+ SI S
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186
Query: 458 EINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGP 517
+I SN++ + V +L LR + + + E
Sbjct: 187 QIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ-----YKT 240
Query: 518 IPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
+L L +++ K+P L+AL ++ NV+ N +K ++
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 264 bits (677), Expect = 3e-80
Identities = 111/567 (19%), Positives = 186/567 (32%), Gaps = 46/567 (8%)
Query: 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSG 104
K LNL L + L L + N+ N K L + S N LS
Sbjct: 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPN--SLFNLSKLEMLQASFNVIDGNIPSGIGNLS 162
+ L LQ + L NN I +F S L+ L+ S N I P +
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195
Query: 163 NLFDLDLRHNNLQDQIPTEIG---NLQNLESLALGTNNLSGLIPPAIFN--ISTIRVLNL 217
LF L L + L + ++ ++ +L+L + LS + + +L+L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 218 HSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSN-------- 269
N + + LP +EY L NN+ SL + L+L +
Sbjct: 256 SYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314
Query: 270 -SFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLG 328
S +F L+ L L++ N++ S+ T L YL L ++
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM--------FTGLINLKYLSLSNSFTS 366
Query: 329 GILPP---LIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSV- 384
+ + L + K+ L L +L L N++ +
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 385 GTLQQLQGLSLEDNNLEGSIPYDLC------HLELNGNKLSG--HIPPCLASLTSLRELR 436
L+ + + L N L L L P L +L L
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486
Query: 437 LGSNKLTSSIPSSLWSLEYILEINLSSNSLND--------SLPSNVQKLKVLRVLDLSRN 488
L +N + + L LE + ++L N+L ++ L L +L+L N
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546
Query: 489 QLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLE- 547
L +L+ + L N + +SL+SL+L N + K
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606
Query: 548 ALSHLKQFNVSQNMLEGEIPVKGSFKN 574
A +L + ++ N + F N
Sbjct: 607 AFRNLTELDMRFNPFDCTCESIAWFVN 633
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 258 bits (660), Expect = 9e-78
Identities = 126/557 (22%), Positives = 201/557 (36%), Gaps = 48/557 (8%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106
+ S + L +P L + + L++T N + +L + FN +S
Sbjct: 9 ADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65
Query: 107 PTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFD 166
P L L++++L++N ++ + + L L N I + NL
Sbjct: 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAI--FNISTIRVLNLHSNQFSG 224
LDL HN L L+NL+ L L N + L + F S+++ L L SNQ
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185
Query: 225 RLPSTIGHSLPNIEYLTLAINNLIGTIPDSLT---NASKLIGLDLGSNSFSGHIPNTFGN 281
P H++ + L L L ++ + L + + L L ++ S TF
Sbjct: 186 FSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244
Query: 282 LR--HLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGN-- 337
L+ +L +L + NNL + S +L Y L+ N + + +
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGN--------DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296
Query: 338 ------FSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQ 391
S L L+ L L ++ ND+ G L L+
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356
Query: 392 GLSLEDNNLEGSIPY----------DLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNK 441
LSL ++ L L L NK+S + L L L LG N+
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
Query: 442 LTSSIPSSLWS-LEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSG--NIPSTI 498
+ + W LE I EI LS N ++ + L+ L L R L + PS
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476
Query: 499 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS--------GKIPKSLEALS 550
L +L L L++N + + L LE LDL NN + G L+ LS
Sbjct: 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536
Query: 551 HLKQFNVSQNMLEGEIP 567
HL N+ N +
Sbjct: 537 HLHILNLESNGFDEIPV 553
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 5e-73
Identities = 105/554 (18%), Positives = 194/554 (35%), Gaps = 40/554 (7%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106
L+L + L++LD++ N +L L+ + S NK+
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161
Query: 107 PTWIGVL--SKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIG---NL 161
+ + S L+ + L +N I P + +L L + + ++ +
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221
Query: 162 SNLFDLDLRHNNLQDQIPTEIGNLQ--NLESLALGTNNLSGLIPPAIFNISTIRVLNLHS 219
+++ +L L ++ L T L+ NL L L NNL+ + + + + L
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 220 NQFSGRLPSTIGHSLPNIEYLTLA---------INNLIGTIPDSLTNASKLIGLDLGSNS 270
N ++ H L N+ YL L + +L S L L++ N
Sbjct: 282 NNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
G N F L +L LS+ + + + + + + L+ L L L N + I
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH----SPLHILNLTKNKISKI 396
Query: 331 LPPLIGNFSASLQSFYAYECKLGGSIP-KEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQ 389
L+ ++G + +E L + + L +N S +
Sbjct: 397 ESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455
Query: 390 LQGLSLEDNNLEGSIPY--------DLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNK 441
LQ L L L+ +L L+L+ N ++ L L L L L N
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515
Query: 442 LTS--------SIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGN 493
L L L ++ +NL SN ++ + L L+++DL N L+
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575
Query: 494 IPSTIGALVDLETLSLASNQFQGPIPESVG-SLISLESLDLSGNNFSGKIPKSLEALSHL 552
S V L++L+L N + G + +L LD+ N F ++ +
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635
Query: 553 KQFNVSQNMLEGEI 566
+ + + L
Sbjct: 636 NETHTNIPELSSHY 649
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 5e-25
Identities = 40/191 (20%), Positives = 65/191 (34%), Gaps = 7/191 (3%)
Query: 389 QLQGLSLEDNNLE---GSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS 445
+ L +P ++ L L N+L + L L +G N ++
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64
Query: 446 IPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLE 505
P L + +NL N L+ L L L N + + +L
Sbjct: 65 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124
Query: 506 TLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEAL--SHLKQFNVSQNMLE 563
TL L+ N + L +L+ L LS N + L+ S LK+ +S N ++
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184
Query: 564 GEIPVKGSFKN 574
P G F
Sbjct: 185 EFSP--GCFHA 193
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 9e-06
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 1/114 (0%)
Query: 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK 101
+ LNL G +L L +D+ LNN + LK ++ N
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595
Query: 102 LSGSIPTWIG-VLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNI 154
++ G L + +R N + + ++ + + + +
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 8e-79
Identities = 110/548 (20%), Positives = 185/548 (33%), Gaps = 41/548 (7%)
Query: 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS 103
K L+LS L + L LD++ L L + + N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 104 GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLS 162
LS LQ + N+ + +L L+ L + N+I +P NL+
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 163 NLFDLDLRHNNLQDQIPTEIGNLQNLE----SLALGTNNLSGLIPPAIFNISTIRVLNLH 218
NL LDL N +Q T++ L + SL L N ++ I P F + L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLR 208
Query: 219 SNQFSGRLPSTIGHSLPNIEYLTLAIN------NLIGTIPDSLTNASKLIGLDLGSNS-- 270
+N S + T L +E L + NL +L L +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 271 -FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGG 329
+ I + F L +++ S+ + + + + +L L + G
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIER----------VKDFSYNFGWQHLELVNCKFGQ 318
Query: 330 ILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLN--GTIPTSVGTL 387
+ + G +L L L L N L+ G S
Sbjct: 319 FPTLKLKSLK------RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372
Query: 388 QQLQGLSLEDNNLEGSIP-----YDLCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNK 441
L+ L L N + L HL+ + L SL +L L +
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 442 LTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGA 500
+ L + + ++ NS ++ ++ +L+ L LDLS+ QL P+ +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 501 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEAL-SHLKQFNVSQ 559
L L+ L+++ N F L SL+ LD S N+ + L+ S L N++Q
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Query: 560 NMLEGEIP 567
N
Sbjct: 553 NDFACTCE 560
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 4e-62
Identities = 104/478 (21%), Positives = 167/478 (34%), Gaps = 26/478 (5%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNL 164
IP + + + L N + S F+ +L++L S I +LS+L
Sbjct: 21 KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 165 FDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224
L L N +Q L +L+ L NL+ L I ++ T++ LN+ N
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 225 RLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKL----IGLDLGSNSFSGHIPNTFG 280
+L N+E+L L+ N + L ++ + LDL N + P F
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 281 NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSA 340
+R L+ L++R N + + + L LVL G L +
Sbjct: 199 EIR-LHKLTLRNNFDSLNVMK----TCIQGLAGLEVHR-LVLGEFRNEGNLEKFDKSALE 252
Query: 341 SLQSFYAYECKL------GGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLS 394
L + E +L I L + +L + S Q L
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLE 310
Query: 395 LEDNNLEGSIPYDLCHL-ELNGNKLSGHIPPCLASLTSLRELRLGSNKLT--SSIPSSLW 451
L + L L L G L SL L L N L+ S +
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 452 SLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIP-STIGALVDLETLSLA 510
+ ++LS N + ++ SN L+ L LD + L S +L +L L ++
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 511 SNQFQGPIPESVGSLISLESLDLSGNNFSGKI-PKSLEALSHLKQFNVSQNMLEGEIP 567
+ L SLE L ++GN+F P L +L ++SQ LE P
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 3e-54
Identities = 97/525 (18%), Positives = 171/525 (32%), Gaps = 42/525 (8%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKL-SGS 105
L L+G + LS L L N +G L LK ++ + N + S
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 106 IPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNI---PSGIGNLS 162
+P + L+ L+ + L +N I L L ++ +L S ++ + G
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200
Query: 163 NLFDLDLRHNNLQDQIPTE-IGNLQNLESLALGTNNLSGLIPPAIFNISTIR-------- 213
L L LR+N + I L LE L F+ S +
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSG 273
L + + + L N+ +L + + L+L + F
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ 318
Query: 274 HIPNTFGNLRHLNVLSIRTNNLTTESS---------SADQWSFL----SSLTNCRKLSYL 320
+L+ L S + N +E S + SF S L YL
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 321 VLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEI-GNLRGLILLTLDFNDLNGT 379
L N + + +G L+ L + +LR LI L +
Sbjct: 379 DLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 380 IPTSVGTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGHIPPCLASLTSL 432
L L+ L + N+ + + D L L+L+ +L P SL+SL
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 433 RELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKL-KVLRVLDLSRNQLS 491
+ L + N S L + ++ S N + S +Q L L+L++N +
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Query: 492 GNIPST--IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLS 534
+ + D L + + + P + + SL+++
Sbjct: 557 CTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-35
Identities = 64/328 (19%), Positives = 112/328 (34%), Gaps = 18/328 (5%)
Query: 3 LISFTSNLFQSHLAIMLLYLLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHL 62
L F + + + + I + V + +L + +
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--F 300
Query: 63 GNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122
L++ F +L L RL +F G L L+ + L
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRL-----TFTSNKGGNAFSEVDLPSLEFLDLS 355
Query: 123 NNNIT--GPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPT 180
N ++ G S F + L+ L SFN + + S L L LD +H+NL+
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 414
Query: 181 EI-GNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEY 239
+ +L+NL L + + +S++ VL + N F I L N+ +
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 240 LTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTES 299
L L+ L P + + S L L++ N+F + L L VL N++ T
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Query: 300 SSADQWSFLSSLTNCRKLSYLVLDSNPL 327
++ L++L L N
Sbjct: 535 KQE----LQHFPSS---LAFLNLTQNDF 555
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 2e-69
Identities = 99/592 (16%), Positives = 194/592 (32%), Gaps = 73/592 (12%)
Query: 5 SFTSNLFQSHLAIMLLYLLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGN 64
+ S + + + K +M G+ D+ + RV L+L+G G G +P +G
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQ 345
Query: 65 LSFLMSLDVTLNN-------FYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQ 117
L+ L L ++ F R I + K+ + + LQ
Sbjct: 346 LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405
Query: 118 IMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ 177
RN + +S +L + + N I I I L+ L + ++
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRITF-ISKAIQRLTKLQIIYFANSPF--- 460
Query: 178 IPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNI 237
T + E + N+ + + L++ +LP + LP +
Sbjct: 461 --TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPEL 517
Query: 238 EYLTLAINNLIG---------TIPDSLTNASKLIGLDLGSNSFSG-HIPNTFGNLRHLNV 287
+ L +A N I + D K+ +G N+ + + L +
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577
Query: 288 LSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYA 347
L N + L + KL+ L LD N + I P F+ ++
Sbjct: 578 LDCVHNKVRH----------LEAFGTNVKLTDLKLDYNQIEEI-PEDFCAFTDQVEGLGF 626
Query: 348 YECKLGGSIPK--EIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP 405
KL IP ++ + + +N + ++ +G++
Sbjct: 627 SHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS--------- 676
Query: 406 YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS-------SIPSSLWSLEYILE 458
+ L+ N++ A+ + + + L +N +TS + + +
Sbjct: 677 ----TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732
Query: 459 INLSSNSLNDSLPSN--VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSL------A 510
I+L N L SL + L L +D+S N S P+ L+ +
Sbjct: 733 IDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790
Query: 511 SNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNML 562
N+ P + + SL L + N+ K+ + L L +++ N
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPN 839
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 219 bits (560), Expect = 2e-62
Identities = 86/532 (16%), Positives = 175/532 (32%), Gaps = 51/532 (9%)
Query: 70 SLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGP 129
+ + L+ + +L GR+ +S + G +P IG L++L+++S ++ T
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362
Query: 130 IPNSLFNLSKLEMLQASFNVIDGNIPSG-IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNL 188
+M + + I + + L DL + + E+ ++
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKD 420
Query: 189 ESLALGTNNLSGL------IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTL 242
++L + L I AI ++ ++++ ++ F+ +
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED------ANS 474
Query: 243 AINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSA 302
S +N L ++L + +P+ +L L L+I N + +
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534
Query: 303 DQWSFL-SSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIG 361
W+ L K+ + N L L K+ + G
Sbjct: 535 ADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFG 592
Query: 362 NLRGLILLTLDFNDLNGTIPTSVGT-LQQLQGLSLEDNNLEGSIP--------YDLCHLE 412
L L LD+N + IP Q++GL N L+ IP Y + ++
Sbjct: 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650
Query: 413 LNGNKLSGHIPPCLASL-----TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467
+ NK+ S+ + + L N++ + I I LS+N +
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710
Query: 468 D-------SLPSNVQKLKVLRVLDLSRNQLSGNIPSTI--GALVDLETLSLASNQFQGPI 518
N + +L +DL N+L+ + L L + ++ N F
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-F 768
Query: 519 PESVGSLISLESLDL------SGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564
P + L++ + GN + P + L Q + N +
Sbjct: 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 6e-56
Identities = 67/519 (12%), Positives = 140/519 (26%), Gaps = 67/519 (12%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106
+ + + L L + L + I N+++ I
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRIT-FI 440
Query: 107 PTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFD 166
I L+KLQI+ N+ T + + + N NL +L D
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS-----DYAKQYENEELSWSNLKDLTD 495
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL---------IPPAIFNISTIRVLNL 217
++L + Q+P + +L L+SL + N + I++ +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555
Query: 218 HSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPN 277
N S + + L N + ++ KL L L N +
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPED 613
Query: 278 TFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGN 337
+ L N L + + + + + N +G + +
Sbjct: 614 FCAFTDQVEGLGFSHNKLKYIPNIF-------NAKSVYVMGSVDFSYNKIGSEGRNISCS 666
Query: 338 FSA----SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDL-------NGTIPTSVGT 386
+ + ++ + + + L N + +
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726
Query: 387 LQQLQGLSLEDNNLEGSIPYDLC--------HLELNGNKLSGHIPPCLASLTSLRELRLG 438
L + L N L S+ D +++++ N S P + + L+ +
Sbjct: 727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIR 784
Query: 439 SNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTI 498
+ + N + P+ + L L + N + + +
Sbjct: 785 HQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL 825
Query: 499 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNN 537
L L +A N SV I L +
Sbjct: 826 --TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 201 bits (512), Expect = 7e-56
Identities = 66/502 (13%), Positives = 143/502 (28%), Gaps = 54/502 (10%)
Query: 98 SFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSG 157
+ + I + + + + + +N N+ + + ++
Sbjct: 260 QLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNK-ELDMWGDQPGVD 318
Query: 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNL 217
+ N + L L + ++P IG L L+ L+ GT++ + T +
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378
Query: 218 HSNQFSGRLPSTIGHSLPNIEYLTLAIN-----NLIGTIPDSLTNASKLIGLDLGSNSFS 272
++ + L + + I + K + +N +
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438
Query: 273 GHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILP 332
I L L ++ + T D
Sbjct: 439 F-ISKAIQRLTKLQIIYFANSPFT-------------YDNIAVDWEDANSDYAKQYENEE 484
Query: 333 PLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNG---------TIPTS 383
N L Y C +P + +L L L + N +
Sbjct: 485 LSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543
Query: 384 VGTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGHIPPCLASLTSLRELR 436
T ++Q + NNLE L L+ NK+ + L +L+
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLK 601
Query: 437 LGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQ--KLKVLRVLDLSRNQLSGNI 494
L N++ + + + S N L +P+ + V+ +D S N++
Sbjct: 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEG 660
Query: 495 PST-----IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS-------GKI 542
+ ++ T++L+ N+ Q E + + ++ LS N +
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720
Query: 543 PKSLEALSHLKQFNVSQNMLEG 564
+ + L ++ N L
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTS 742
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 175 bits (444), Expect = 9e-47
Identities = 69/458 (15%), Positives = 141/458 (30%), Gaps = 78/458 (17%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSG-- 104
N NL L +++ LP+ L L L+ ++ + N+
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531
Query: 105 -------SIPTWIGVLSKLQIMSLRNNNITG-PIPNSLFNLSKLEMLQASFNVIDGNIPS 156
+ K+QI + NN+ P SL + KL +L N +
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLE 589
Query: 157 GIGNLSNLFDLDLRHNNLQDQIPTEIG-NLQNLESLALGTNNLSGLIPPA-IFNISTIRV 214
G L DL L +N ++ +IP + +E L N L + ++ +
Sbjct: 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648
Query: 215 LNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGH 274
++ N+ I S+ + + L N
Sbjct: 649 VDFSYNKIGS-EGRNISCSMDDY-------------------KGINASTVTLSYNEIQKF 688
Query: 275 IPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPL 334
F ++ + + N +T+ ++ + + N L+ + L N L +
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLK-PKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747
Query: 335 IGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLS 394
L L + + +N + + PT QL+
Sbjct: 748 ------------------------RATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFG 782
Query: 395 LEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLE 454
+ + GN++ P + + SL +L++GSN + + L
Sbjct: 783 IRHQ------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TP 827
Query: 455 YILEINLSSNSLND-SLPSNVQKLKV-LRVLDLSRNQL 490
+ ++++ N + S ++ + VL + Q
Sbjct: 828 QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 2e-66
Identities = 81/283 (28%), Positives = 123/283 (43%), Gaps = 17/283 (6%)
Query: 306 SFLSSLTNCRKLSYLVLDSNP----LGGILPPLIGNFSASLQSFYAYECKLGGS--IPKE 359
L N LS + ++ G+L + + + L IP
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSS 71
Query: 360 IGNLRGLILLTL-DFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLC------HLE 412
+ NL L L + N+L G IP ++ L QL L + N+ G+IP L L+
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 413 LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILE-INLSSNSLNDSLP 471
+ N LSG +PP ++SL +L + N+++ +IP S S + + +S N L +P
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Query: 472 SNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESL 531
L L +DLSRN L G+ G+ + + + LA N + VG +L L
Sbjct: 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGL 249
Query: 532 DLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
DL N G +P+ L L L NVS N L GEIP G+ +
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR 292
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 5e-62
Identities = 75/293 (25%), Positives = 124/293 (42%), Gaps = 18/293 (6%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYG--HLPNELGKLGRLKFISFS-FNKLS 103
+ G + + +LD++ N +P+ L L L F+ N L
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 104 GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSN 163
G IP I L++L + + + N++G IP+ L + L L S+N + G +P I +L N
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 164 LFDLDLRHNNLQDQIPTEIGNLQNL-ESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222
L + N + IP G+ L S+ + N L+G IPP N++ + ++L N
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209
Query: 223 SGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL 282
G G S N + + LA N+L + + + L GLDL +N G +P L
Sbjct: 210 EGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 283 RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL--GGILPP 333
+ L+ L++ NNL E + N ++ +N G LP
Sbjct: 268 KFLHSLNVSFNNLCGE---------IPQGGNLQRFDVSAYANNKCLCGSPLPA 311
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 201 bits (515), Expect = 2e-60
Identities = 76/318 (23%), Positives = 128/318 (40%), Gaps = 39/318 (12%)
Query: 95 ISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITG--PIPNSLFNLSKLEMLQ-ASFNVID 151
G + ++ + L N+ PIP+SL NL L L N +
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 152 GNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIST 211
G IP I L+ L L + H N+ IP + ++ L +L N LSG +PP+I ++
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 212 IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSF 271
+ + N+ SG +P + G +T++ N L G IP + N + L +DL N
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209
Query: 272 SGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGIL 331
G FG+ ++ + + N+L + L + + L+ L L +N
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFD---------LGKVGLSKNLNGLDLRNN------ 254
Query: 332 PPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQ 391
++ G++P+ + L+ L L + FN+L G IP G LQ+
Sbjct: 255 -------------------RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD 294
Query: 392 GLSLEDNNLEGSIPYDLC 409
+ +N P C
Sbjct: 295 VSAYANNKCLCGSPLPAC 312
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 4e-58
Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 22/299 (7%)
Query: 251 IPDSLTNASKL----IGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWS 306
I L N + L D + ++ G + +T +N L + NL +
Sbjct: 14 IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK------PYP 67
Query: 307 FLSSLTNCRKLSYLVL-DSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRG 365
SSL N L++L + N L G +PP I + L Y + G+IP + ++
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 366 LILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLC-------HLELNGNKL 418
L+ L +N L+GT+P S+ +L L G++ + N + G+IP + ++ N+L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 419 SGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLK 478
+G IPP A+L +L + L N L S + +I+L+ NSL L V K
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244
Query: 479 VLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNN 537
L LDL N++ G +P + L L +L+++ N G IP+ G+L + + N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 3e-66
Identities = 110/534 (20%), Positives = 177/534 (33%), Gaps = 28/534 (5%)
Query: 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS 103
+ L S L L L LD+T Y + RL + + N L
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94
Query: 104 GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSN 163
T + L+ + I+ L N LE L N I
Sbjct: 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154
Query: 164 LFDLDLRHNNLQDQIPTEIGNLQNLESLALG-TNNLSGLIPPAIFNISTIRVLNLHSNQF 222
L LD ++N + ++ +LQ +L+L N I P F+ + + LN Q
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214
Query: 223 SGRLPSTIGHS-LPNIEYLTLAINNLIGTIPDSLTN--ASKLIGLDLGSNSFSGHIPNTF 279
+ + +S + ++ T + P + ++L + F NTF
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274
Query: 280 GNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFS 339
L L + +L+ S L L LVL +N + NF
Sbjct: 275 HCFSGLQELDLTATHLS---------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325
Query: 340 ASLQSFYAYECKLGGSIPKE-IGNLRGLILLTLDFNDLN--GTIPTSVGTLQQLQGLSLE 396
SL + + NL L L L +D+ + L LQ L+L
Sbjct: 326 -SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384
Query: 397 DNNLEGSIPYDLC------HLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSS 449
N L+L +L +L L+ L L + L S
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444
Query: 450 LWSLEYILEINLSSNSL---NDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLET 506
L + +NL N N +++Q L L +L LS LS +L +
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504
Query: 507 LSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQN 560
+ L+ N+ E++ L + L+L+ N+ S +P L LS + N+ QN
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQN 557
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 2e-63
Identities = 99/492 (20%), Positives = 172/492 (34%), Gaps = 25/492 (5%)
Query: 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVID 151
+ + FSFN L T L L + L I ++ + +L+ L + N +
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94
Query: 152 GNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIST 211
+ + L L + + N + LESL LG+N++S + P F
Sbjct: 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154
Query: 212 IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAIN-NLIGTIPDSLTNASKLIGLDLGSNS 270
++VL+ +N + L L+L +N N I I +++ L+ G
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSS-LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213
Query: 271 FSGHIPN--TFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLG 328
I ++ L + + + S + + S+ + L +
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE------SINLQKHYFF 267
Query: 329 GILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQ 388
I FS LQ L +P + L L L L N S
Sbjct: 268 NISSNTFHCFS-GLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325
Query: 389 QLQGLSLEDNNLEGSIPYD-------LCHLELNGNKL--SGHIPPCLASLTSLRELRLGS 439
L LS++ N + L L+L+ + + S L +L+ L+ L L
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385
Query: 440 NKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTI 498
N+ S + + ++L+ L + Q L +L+VL+LS + L +
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445
Query: 499 GALVDLETLSLASNQFQGPIPESVGS---LISLESLDLSGNNFSGKIPKSLEALSHLKQF 555
L L+ L+L N F + S L LE L LS + S + +L +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505
Query: 556 NVSQNMLEGEIP 567
++S N L
Sbjct: 506 DLSHNRLTSSSI 517
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 8e-51
Identities = 99/465 (21%), Positives = 166/465 (35%), Gaps = 26/465 (5%)
Query: 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSG 104
K L G+ L N L SL + N+ + +LK + F N +
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167
Query: 105 SIPTWIGVLSKLQIMSLR-NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGN--L 161
+ L + +SL N N I F+ + + L I G+ N +
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227
Query: 162 SNLFDLDLRHNNLQDQIPTEIGNLQ--NLESLALGTNNLSGLIPPAIFNISTIRVLNLHS 219
+L+ + +D P L ++ES+ L + + S ++ L+L +
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287
Query: 220 NQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHI-PNT 278
S LPS + L ++ L L+ N S +N L L + N+ +
Sbjct: 288 THLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345
Query: 279 FGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF 338
NL +L L + +++ T L N L L L N +
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNL------QLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399
Query: 339 SASLQSFYAYECKLGGSIPKEI-GNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLED 397
L+ +L + NL L +L L + L+ + L LQ L+L+
Sbjct: 400 P-QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
Query: 398 NNLEGSIPYD---------LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPS 448
N+ L L L+ LS SL + + L N+LTSS
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518
Query: 449 SLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGN 493
+L L+ + +NL+SN ++ LPS + L R ++L +N L
Sbjct: 519 ALSHLK-GIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 3e-33
Identities = 89/406 (21%), Positives = 147/406 (36%), Gaps = 24/406 (5%)
Query: 2 MLISFTSNLFQSHLAIMLLYLLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPH 61
+L+ F + ++ L + +S + V+++NL
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDIS-PAVFEGLCEMSVESINLQKHYFFNISSNT 273
Query: 62 LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121
S L LD+T + LP+ L L LK + S NK L +S+
Sbjct: 274 FHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 122 RNNNITGPIPNSLF-NLSKLEMLQASFNVID--GNIPSGIGNLSNLFDLDLRHNNLQDQI 178
+ N + NL L L S + I+ + NLS+L L+L +N
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 179 PTEIGNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQFSGRLPSTIGHSLPNI 237
LE L L L + F N+ ++VLNL + + LP +
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPAL 451
Query: 238 EYLTLAINNLIGTI---PDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNN 294
++L L N+ +SL +L L L S + F +L+ +N + + N
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511
Query: 295 LTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGG 354
LT+ S A L++ + + YL L SN + ILP L+ S ++ + L
Sbjct: 512 LTSSSIEA--------LSHLKGI-YLNLASNHISIILPSLLPILS-QQRTINLRQNPLDC 561
Query: 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNL 400
+ N+ L + L T T L+G+ L D L
Sbjct: 562 T----CSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-21
Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 393 LSLEDNNLE---GSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSS 449
+ E+ L G++P LE + N L + L +L L L ++ +
Sbjct: 17 YNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT 76
Query: 450 LWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSL 509
S + + L++N L + + K L+ L + +S + LE+L L
Sbjct: 77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136
Query: 510 ASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQ--FNVSQNMLEG 564
SN L+ LD N + + +L N++ N + G
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 481 RVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540
+ + L+ IP T+ E L + N + LI+L LDL+
Sbjct: 15 KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71
Query: 541 KIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
+ ++ L ++ N L +
Sbjct: 72 IHEDTFQSQHRLDTLVLTANPLIFMAE--TALSG 103
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 5e-62
Identities = 106/542 (19%), Positives = 172/542 (31%), Gaps = 41/542 (7%)
Query: 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS 103
K ++LS L N S L LD++ L L + + N +
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 104 GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLS 162
P L+ L+ + + + L L+ L + N I +P+ NL+
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153
Query: 163 NLFDLDLRHNNLQDQIPTEIGNLQNL----ESLALGTNNLSGLIPPAIFNISTIRVLNLH 218
NL +DL +N +Q ++ L+ SL + N + I F + L L
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLR 212
Query: 219 SNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGL--------DLGSNS 270
N S + T +L + L + + S + GL L +
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
F L +++ +S+ ++ L + K L + L
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKY----------LEDVPKHFKWQSLSIIRCQLKQF 322
Query: 331 LPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQ-- 388
L+S K SI + L L L L N L+ + S L
Sbjct: 323 ----PTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376
Query: 389 QLQGLSLEDNNLEGSIPYDLC------HLELNGNKLSGHIPP-CLASLTSLRELRLGSNK 441
L+ L L N + + HL+ + L SL L L +
Sbjct: 377 SLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435
Query: 442 LTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGA 500
L + + ++ NS D+ SNV L LDLS+ QL
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495
Query: 501 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQN 560
L L+ L+++ N L SL +LD S N L FN++ N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
Query: 561 ML 562
+
Sbjct: 556 SV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 191 bits (486), Expect = 1e-53
Identities = 102/482 (21%), Positives = 174/482 (36%), Gaps = 22/482 (4%)
Query: 98 SFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSG 157
KLS +P I S + + L N + S N S+L+ L S I+
Sbjct: 19 MDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 75
Query: 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNL 217
L +L +L L N +Q P L +LE+L L+ L I + T++ LN+
Sbjct: 76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135
Query: 218 HSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKL----IGLDLGSNSFSG 273
N +L N+ ++ L+ N + + L + + LD+ N
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195
Query: 274 HIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPP 333
F + L+ L++R N ++ L+ L R + D L P
Sbjct: 196 IQDQAFQGI-KLHELTLRGNFNSSNIMK-TCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253
Query: 334 LIGNFSA-SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQG 392
++ ++ F + L + ++L + V + Q
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQS 311
Query: 393 LSLEDNNLEGSIPYDLCHLE---LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSS 449
LS+ L+ DL L+ L NK S I +L SL L L N L+ S S
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCS 369
Query: 450 LWSLEY--ILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIP-STIGALVDLET 506
L + ++LS N + +N L+ L+ LD + L S +L L
Sbjct: 370 YSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428
Query: 507 LSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKS-LEALSHLKQFNVSQNMLEGE 565
L ++ + L SL +L ++GN+F + ++L ++S+ LE
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488
Query: 566 IP 567
Sbjct: 489 SW 490
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 8e-34
Identities = 77/463 (16%), Positives = 158/463 (34%), Gaps = 39/463 (8%)
Query: 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLN---NFYGHLPNELGKLGRLKFISFSFNK 101
++LS + L L ++++L+ N + ++ + +L ++ N
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215
Query: 102 LSGSIP-TWIGVLSKLQIMSLR------NNNITGPIPNSLFNLSKL--EMLQASFNVIDG 152
S +I T + L+ L + L N+ P+ + L + + + ++
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275
Query: 153 NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTI 212
+ L+N+ + L +++ ++ +SL++ L ++ +
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPT---LDLPFL 330
Query: 213 RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTN--ASKLIGLDLGSNS 270
+ L L N+ S +LP++ YL L+ N L + S ++ + L LDL N
Sbjct: 331 KSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
+ F L L L + + L + S+ + KL YL +
Sbjct: 388 AI-IMSANFMGLEELQHLDFQHSTLKRVTE-------FSAFLSLEKLLYLDISYTNTKID 439
Query: 331 LPPLIGNFSASLQSFYAYECKLGGSIPKEI-GNLRGLILLTLDFNDLNGTIPTSVGTLQQ 389
+ + SL + + + N L L L L TL +
Sbjct: 440 FDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498
Query: 390 LQGLSLEDNNLEGSIPYDLCHLE------LNGNKLSGHIPPCLASLTSLRELRLGSNKLT 443
LQ L++ NNL L + N++ SL L +N +
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
Query: 444 SSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLS 486
I L+++ E ++ + ++ VLD +
Sbjct: 559 -CICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFN 600
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 1e-28
Identities = 56/327 (17%), Positives = 106/327 (32%), Gaps = 19/327 (5%)
Query: 4 ISFTSNLFQSHLAIMLLYLLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLG 63
+ L + + + T I V A++L+G+ + +
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVP 304
Query: 64 NLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRN 123
SL + L LK ++ + NK S I L L + L
Sbjct: 305 KHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSR 359
Query: 124 NNITGPIPNSLFNL--SKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTE 181
N ++ S +L + L L SFN + + L L LD +H+ L+
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFS 418
Query: 182 -IGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYL 240
+L+ L L + N ++++ L + N F S + + N+ +L
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478
Query: 241 TLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESS 300
L+ L +L L++ N+ + + L L+ L N + T
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538
Query: 301 SADQWSFLSSLTNCRKLSYLVLDSNPL 327
+ L++ L +N +
Sbjct: 539 IL--------QHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 4e-27
Identities = 48/283 (16%), Positives = 95/283 (33%), Gaps = 11/283 (3%)
Query: 35 ISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKF 94
+ +H + ++L++ L L L L TL G + + L L +
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL-----TLTMNKGSISFKKVALPSLSY 354
Query: 95 ISFSFNKLSGSIPT--WIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDG 152
+ S N LS S + L+ + L N + + L +L+ L + +
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR 413
Query: 153 NIP-SGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF-NIS 210
S +L L LD+ + N + L +L +L + N+ +F N +
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473
Query: 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270
+ L+L Q + + +L ++ L ++ NNL+ L LD N
Sbjct: 474 NLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTN 313
+ L ++ N++ ++
Sbjct: 533 IETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQ 575
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 1e-47
Identities = 107/484 (22%), Positives = 171/484 (35%), Gaps = 20/484 (4%)
Query: 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVID 151
K + SFN L +LQ++ L I + +LS L L + N I
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 152 GNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF-NIS 210
LS+L L NL IG+L+ L+ L + N + P F N++
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAIN---NLIGTIPDSLTNASKLIGLDLG 267
+ L+L SN+ + T L + L L+++ N + I +L L L
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208
Query: 268 SNSFSGHIP-NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNP 326
+N S ++ L L V + + + S+L L+
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEF--RNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 327 LGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGT 386
L L +I F+ + K+ G L L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK--- 323
Query: 387 LQQLQGLSLEDNNLEGSIP----YDLCHLELNGNKLS--GHIPPCLASLTSLRELRLGSN 440
L+ L+ L+ N + L L+L+ N LS G TSL+ L L N
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Query: 441 KLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIG 499
+ + + S+ LE + ++ ++L +V L+ L LD+S
Sbjct: 384 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 500 ALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVS 558
L LE L +A N FQ + L +L LDLS P + +LS L+ N++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Query: 559 QNML 562
N L
Sbjct: 503 SNQL 506
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 3e-47
Identities = 106/520 (20%), Positives = 182/520 (35%), Gaps = 42/520 (8%)
Query: 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS 103
K L+LS L + L LD++ L L + + N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 104 GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVI-DGNIPSGIGNLS 162
LS LQ + N+ + +L L+ L + N+I +P NL+
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 163 NLFDLDLRHNNLQDQIPTEIGNLQNLE----SLALGTNNLSGLIPPAIFNISTIRVLNLH 218
NL LDL N +Q T++ L + SL L N ++ I P F + L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLR 208
Query: 219 SNQFSGRLPSTIGHSLPNIEYLTLAI------NNLIGTIPDSLTNASKLIGLDLGSNS-- 270
+N S + T L +E L + NL +L L +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 271 -FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGG 329
+ I + F L +++ S+ + + + + +L L + G
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIER----------VKDFSYNFGWQHLELVNCKFGQ 318
Query: 330 ILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLN--GTIPTSVGTL 387
SL+ K G + + +L L L L N L+ G S
Sbjct: 319 ----FPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGT 372
Query: 388 QQLQGLSLEDNNLEGSIPYDLC------HLELNGNKLSGHIPPC-LASLTSLRELRLGSN 440
L+ L L N + ++ + HL+ + L SL +L L +
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 441 KLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIG 499
+ L + + ++ NS ++ ++ +L+ L LDLS+ QL P+
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 500 ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539
+L L+ L++ASNQ + L SL+ + L N +
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 1e-43
Identities = 101/481 (20%), Positives = 169/481 (35%), Gaps = 27/481 (5%)
Query: 98 SFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSG 157
IP + + + L N + S F+ +L++L S I
Sbjct: 15 MELNFY-KIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71
Query: 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNL 217
+LS+L L L N +Q L +L+ L NL+ L I ++ T++ LN+
Sbjct: 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 218 HSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKL----IGLDLGSNSFSG 273
N +L N+E+L L+ N + L ++ + LDL N +
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 274 HIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPP 333
P F +R L+ L++R N + + + L ++ LVL G L
Sbjct: 192 IQPGAFKEIR-LHKLTLRNNFDSLNVMK----TCIQGLAG-LEVHRLVLGEFRNEGNLEK 245
Query: 334 LIGNFSASLQSFYAYECKL------GGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGT- 386
+ L + E +L I L + +L + S
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305
Query: 387 LQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLT--S 444
Q L+ ++ + L L NK L SL L L N L+
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKG 363
Query: 445 SIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIP-STIGALVD 503
S + + ++LS N + ++ SN L+ L LD + L S +L +
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 504 LETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPK-SLEALSHLKQFNVSQNML 562
L L ++ + L SLE L ++GN+F L +L ++SQ L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 563 E 563
E
Sbjct: 483 E 483
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 3e-26
Identities = 77/452 (17%), Positives = 137/452 (30%), Gaps = 50/452 (11%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNF-YGHLPNELGKLGRLKFISFSFNKLSGS 105
L L +G+L L L+V N LP L L+ + S NK+
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Query: 106 IPTWIGVLSKLQIM----SLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSG-IGN 160
T + VL ++ ++ L N + I F +L L N N+ I
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223
Query: 161 LSNLFDLDLRHNNLQDQ---IPTEIGNLQNLESLALGTNNLSGL------IPPAIFNIST 211
L+ L L +++ + L+ L +L + L+ L I ++
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283
Query: 212 IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSF 271
+ +L S + ++E + SL L SN
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR------LTFTSNKG 337
Query: 272 SGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLT-----------------NC 314
+ +L L L + N L+ + + +SL
Sbjct: 338 GNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395
Query: 315 RKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFN 374
+L +L + L + + +L + L L +L + N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 375 DLNGTIPTSV-GTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGHIPPCL 426
+ L+ L L L LE + L L + N+L
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514
Query: 427 ASLTSLRELRLGSNKLTSSIPSSLWSLEYILE 458
LTSL+++ L +N S P + ++ +
Sbjct: 515 DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 546
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 62/296 (20%), Positives = 110/296 (37%), Gaps = 11/296 (3%)
Query: 3 LISFTSNLFQSHLAIMLLYLLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHL 62
L F + + + + I + V + +L + +
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDF 300
Query: 63 GNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122
L++ +N +G P KL LK ++F+ NK + + + L L+ + L
Sbjct: 301 SYNFGWQHLEL-VNCKFGQFPT--LKLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLS 355
Query: 123 NNNIT--GPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPT 180
N ++ G S F + L+ L SFN + + S L L LD +H+NL+
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEF 414
Query: 181 EI-GNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEY 239
+ +L+NL L + + +S++ VL + N F I L N+ +
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 240 LTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNL 295
L L+ L P + + S L L++ SN F L L + + TN
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 3e-42
Identities = 108/584 (18%), Positives = 195/584 (33%), Gaps = 68/584 (11%)
Query: 36 SCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFI 95
SC + L +P L L ++ N + L +L+ +
Sbjct: 1 SCSFDGRIA---FYRFCNLT-QVPQVLNTTE---RLLLSFNYIRTVTASSFPFLEQLQLL 53
Query: 96 SFSFNKLSGSI-PTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNI 154
+I L L+I+ L ++ I P++ L L L+ F + +
Sbjct: 54 ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113
Query: 155 --PSGIGNLSNLFDLDLRHNNLQD-QIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIS- 210
NL L LDL N ++ + G L +L+S+ +N + + + +
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173
Query: 211 -TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTL-----------------AINNLIGTIP 252
T+ +L +N R+ G + + L N + +
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233
Query: 253 DSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLT 312
SL A ++G G ++ NTF L +V + ++ S ++ + L L
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293
Query: 313 ------------------NCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGG 354
L L L N LG + + + +
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP-KVAYIDLQKNHIAI 352
Query: 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLC--HLE 412
+ L L L L N L T++ + + + L N L +L +
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407
Query: 413 LNGNKLSG-HIPPCLASLTSLRELRLGSNKLTS-SIPSSLWSLEYILEINLSSNSLNDSL 470
L+ N+L I L + L+ L L N+ +S S + + ++ L N L +
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467
Query: 471 PSNV-----QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL 525
+ + + L L+VL L+ N L+ P L L LSL SN+ + +
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHND-LP 525
Query: 526 ISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVK 569
+LE LD+S N P + L +++ N E +
Sbjct: 526 ANLEILDISRNQLLAPNP---DVFVSLSVLDITHNKFICECELS 566
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 5e-22
Identities = 76/408 (18%), Positives = 134/408 (32%), Gaps = 26/408 (6%)
Query: 3 LISFTSNLFQSHLAIMLLYLLKT-TNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPH 61
S +N S +++ + NM L + +S V + +
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS--GNGWTVDITGNFSNAISKSQAFS 235
Query: 62 LGNLSFLMSLDVTLNNFYGHLPNELGKLGR--LKFISFSFNKLSGSIPTWIGVLSKLQIM 119
L +M +N N L R ++ + S + L L+++
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295
Query: 120 SLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIP 179
+L N I + + L L++L S+N++ S L + +DL+ N++
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355
Query: 180 TEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEY 239
L+ L++L L N L+ I I +I + L N+ T+
Sbjct: 356 QTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL-----VTLPKINLTANL 405
Query: 240 LTLAINNLIG-TIPDSLTNASKLIGLDLGSNSFSGHIPN-TFGNLRHLNVLSIRTNNLTT 297
+ L+ N L I L L L L N FS + T L L + N L
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465
Query: 298 ESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIP 357
+ W L++ L L L+ N L + P + + + +L+ +L +
Sbjct: 466 AWETELCWDVFEGLSH---LQVLYLNHNYLNSLPPGVFSHLT-ALRGLSLNSNRL-TVLS 520
Query: 358 KEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP 405
L +L + N L P L L + N
Sbjct: 521 HND-LPANLEILDISRNQLLAPNP---DVFVSLSVLDITHNKFICECE 564
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 9e-09
Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 5/116 (4%)
Query: 460 NLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIP 519
+L +P L L LS N + S+ L L+ L L S I
Sbjct: 10 FYRFCNL-TQVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65
Query: 520 ESV-GSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
+ +L +L LDL + P + + L HL + + L + G F+N
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-41
Identities = 97/447 (21%), Positives = 173/447 (38%), Gaps = 61/447 (13%)
Query: 110 IGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDL 169
L++ L N+T + +L ++ LQA I G+ L+NL ++
Sbjct: 20 DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINF 75
Query: 170 RHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPST 229
+N L D P + NL L + + N ++ + P + N++ + L L +NQ +
Sbjct: 76 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--IDP 129
Query: 230 IGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLS 289
+ + L N+ L L+ N + + +L+ + L L N + P NL L L
Sbjct: 130 LKN-LTNLNRLELSSNTI--SDISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLD 183
Query: 290 IRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYE 349
I +N ++ +S L L L+ +N + I P +G + +L
Sbjct: 184 ISSNKVSD----------ISVLAKLTNLESLIATNNQISDITP--LGILT-NLDELSLNG 230
Query: 350 CKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLC 409
+L + +L L L L N ++ P + L +L L L N + P
Sbjct: 231 NQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP---- 282
Query: 410 HLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDS 469
LA LT+L L L N+L P + +L+ + + L N+++D
Sbjct: 283 ----------------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324
Query: 470 LPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLE 529
S V L L+ L N++S S++ L ++ LS NQ P + +L +
Sbjct: 325 --SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378
Query: 530 SLDLSGNNFSGKIPKSLEALSHLKQFN 556
L L+ ++ +S
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVK 405
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 9e-38
Identities = 113/505 (22%), Positives = 191/505 (37%), Gaps = 86/505 (17%)
Query: 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS 103
V L +G+ + L+ L ++ + N P L L +L I + N+++
Sbjct: 48 VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103
Query: 104 GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSN 163
P + L+ L ++L NN IT P L NL+ L L+ S N I S + L++
Sbjct: 104 DITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTS 157
Query: 164 LFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFS 223
L L N + D P + NL LE L + +N +S + + ++ + L +NQ S
Sbjct: 158 LQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 212
Query: 224 GRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLR 283
P L N++ L+L N L +L + + L LDL +N S P L
Sbjct: 213 DITPL---GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLT 265
Query: 284 HLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQ 343
L L + N ++ +S L L+ L L+ N L I
Sbjct: 266 KLTELKLGANQISN----------ISPLAGLTALTNLELNENQLEDI------------- 302
Query: 344 SFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGS 403
I NL+ L LTL FN+++ P V +L +LQ L +N +
Sbjct: 303 --------------SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD- 345
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463
LA+LT++ L G N+++ P L +L I ++ L+
Sbjct: 346 -------------------VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384
Query: 464 NSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVG 523
+ ++ + + + + L P+TI + N E
Sbjct: 385 QAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSY-TNEVSY 441
Query: 524 SLISLESLDLSGNNFSGKIPKSLEA 548
+ ++ FSG + + L+A
Sbjct: 442 TFSQPVTIGKGTTTFSGTVTQPLKA 466
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 4e-21
Identities = 57/267 (21%), Positives = 110/267 (41%), Gaps = 24/267 (8%)
Query: 308 LSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLI 367
+ + T + VL + + + + + A + + L L
Sbjct: 17 IFTDTALAEKMKTVLGKTNVTDTVS--QTDLD-QVTTLQADRLGI--KSIDGVEYLNNLT 71
Query: 368 LLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP----YDLCHLELNGNKLSGHIP 423
+ N L P + L +L + + +N + P +L L L N+++ P
Sbjct: 72 QINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 129
Query: 424 PCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVL 483
L +LT+L L L SN ++ S+L L + +++ + + + L L L
Sbjct: 130 --LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERL 182
Query: 484 DLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIP 543
D+S N++S S + L +LE+L +NQ P +G L +L+ L L+GN
Sbjct: 183 DISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--I 236
Query: 544 KSLEALSHLKQFNVSQNMLEGEIPVKG 570
+L +L++L +++ N + P+ G
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAPLSG 263
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 2e-41
Identities = 92/492 (18%), Positives = 187/492 (38%), Gaps = 35/492 (7%)
Query: 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVID 151
+K + SFNK++ + + LQ++ L+++ I ++ ++L LE L S N +
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 152 GNIPSGIGNLSNLFDLDLRHNNLQD-QIPTEIGNLQNLESLALGTNNLSGLIPPAIF-NI 209
S G LS+L L+L N Q + + NL NL++L +G I F +
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Query: 210 STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSN 269
+++ L + + S S+ +I +LTL ++ + S + L+L
Sbjct: 148 TSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206
Query: 270 SFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGG 329
+ + + + + + + + L L +LS + D L G
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE-LLKLLRYILELSEVEFDDCTLNG 265
Query: 330 ILPPLIGNFSA----------SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGT 379
+ +++ + + L + L + +T++ + +
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325
Query: 380 IPTSVGTLQQLQGLSLEDNNLEGSIPYD---------LCHLELNGNKLS--GHIPPCLAS 428
+ L+ L+ L L +N + + L L L+ N L L +
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385
Query: 429 LTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRN 488
L +L L + N +P S E + +NLSS + + + + + L VLD+S N
Sbjct: 386 LKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNN 441
Query: 489 QLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEA 548
L + L L+ L ++ N+ + +P++ L + +S N +
Sbjct: 442 NLD-SFSLF---LPRLQELYISRNKLKT-LPDAS-LFPVLLVMKISRNQLKSVPDGIFDR 495
Query: 549 LSHLKQFNVSQN 560
L+ L++ + N
Sbjct: 496 LTSLQKIWLHTN 507
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 2e-35
Identities = 94/522 (18%), Positives = 172/522 (32%), Gaps = 54/522 (10%)
Query: 35 ISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKF 94
+SCD+ + +IP L + + SLD++ N +L L+
Sbjct: 2 LSCDASG----VCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQV 54
Query: 95 ISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDG-N 153
+ ++++ L L+ + L +N+++ + LS L+ L N
Sbjct: 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTE-IGNLQNLESLALGTNNLSGLIPPAIFNISTI 212
+ S NL+NL L + + +I L +L L + +L ++ +I I
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174
Query: 213 RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFS 272
L LH ++ + L L ++ YL L NL L + + S
Sbjct: 175 HHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233
Query: 273 GHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTN----------CRKLSYLVL 322
+F L L + + + + + + + + + L +
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293
Query: 323 DSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTI-- 380
L L + ++ K+ +L+ L L L N +
Sbjct: 294 PQFYLFYDLSTVYSLLE-KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352
Query: 381 -PTSVGTLQQLQGLSLEDNNLEGSIPYD---------LCHLELNGNKLSGHIPPCLASLT 430
G LQ L L N+L S+ L L+++ N +P
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410
Query: 431 SLRELRLGSNKLTSSIPSSLWSLEYIL-----------------EINLSSNSLNDSLPSN 473
+R L L S + +LE + E+ +S N L +LP
Sbjct: 411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDA 469
Query: 474 VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQ 515
VL V+ +SRNQL L L+ + L +N +
Sbjct: 470 SL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-35
Identities = 90/457 (19%), Positives = 171/457 (37%), Gaps = 45/457 (9%)
Query: 114 SKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNN 173
+ R+ + T IP+ L + ++ L SFN I + +NL L L+ +
Sbjct: 5 DASGVCDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61
Query: 174 LQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHS 233
+ +L +LE L L N+LS L +S+++ LNL N + +++ +
Sbjct: 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121
Query: 234 LPNIEYLTLAINNLIGTIP-DSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRT 292
L N++ L + I + L L++ + S + + ++R ++ L++
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 293 NNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKL 352
+ + YL L L ++
Sbjct: 182 SESAFLLEIF--------ADILSSVRYLELRDTNLARF--------------QFSPLPVD 219
Query: 353 GGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLE 412
S P + RG +L FN+L + + +L + +D L G L
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNEL----LKLLRYILELSEVEFDDCTLNG-----LGDFN 270
Query: 413 LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPS 472
+ + + + ++R L + L + + LE + I + ++ + +P
Sbjct: 271 PSESDVVSELG--KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPC 327
Query: 473 NV-QKLKVLRVLDLSRNQLSGNIPST---IGALVDLETLSLASNQFQ--GPIPESVGSLI 526
+ Q LK L LDLS N + GA L+TL L+ N + E + +L
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387
Query: 527 SLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
+L SLD+S N F +P S + ++ N+S +
Sbjct: 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 5e-30
Identities = 74/494 (14%), Positives = 157/494 (31%), Gaps = 65/494 (13%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYG-HLPNELGKLGRLKFISFSFNKLSGS 105
L+LS L G LS L L++ N + + + L L+ + +
Sbjct: 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138
Query: 106 IPTW-IGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNL 164
I L+ L + ++ ++ SL ++ + L + + LS++
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198
Query: 165 FDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224
L+LR NL + + + + S L + + + L ++
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV-- 256
Query: 225 RLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRH 284
+L + + ++++ + + L + + + L
Sbjct: 257 ---EFDDCTLNGLGDFNPSESDVVSEL--GKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311
Query: 285 LNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQS 344
+ +++ + + S + + L +L L N +
Sbjct: 312 VKRITVENSKVFLVPCSF--------SQHLKSLEFLDLSENLMVEEYLKN---------- 353
Query: 345 FYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSI 404
G L L L N L ++ + L L+ L+
Sbjct: 354 ------------SACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLT---------- 390
Query: 405 PYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSN 464
L+++ N +P +R L L S + +LE +++S+N
Sbjct: 391 -----SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV---LDVSNN 441
Query: 465 SLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGS 524
+L+ S L L+ L +SRN+L +P L + ++ NQ +
Sbjct: 442 NLD-SFSLF---LPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDR 495
Query: 525 LISLESLDLSGNNF 538
L SL+ + L N +
Sbjct: 496 LTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 3e-27
Identities = 69/412 (16%), Positives = 138/412 (33%), Gaps = 40/412 (9%)
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRL 226
D R + IP+ + ++SL L N ++ + + + ++VL L S++ + +
Sbjct: 10 CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TI 65
Query: 227 PSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSG-HIPNTFGNLRHL 285
+SL ++E+L L+ N+L S L L+L N + + + F NL +L
Sbjct: 66 EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125
Query: 286 NVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSF 345
L I +E L+ L + + L
Sbjct: 126 QTLRIGNVETFSEIRR-------IDFAGLTSLNELEIKALSLRNY--------------- 163
Query: 346 YAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP 405
+ + ++R + LTL ++ + L ++ L L D NL
Sbjct: 164 ----------QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213
Query: 406 YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNS 465
L E++ + + S EL + + + +
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273
Query: 466 LNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL 525
+ + +R L + + L ++ + L ++ +++ +++ L
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333
Query: 526 ISLESLDLSGNNFSGKIPKS---LEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
SLE LDLS N + K+ A L+ +SQN L
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 7e-24
Identities = 72/434 (16%), Positives = 138/434 (31%), Gaps = 43/434 (9%)
Query: 45 KALNLSGMGLGG-TIPPHLGNLSFLMSLDVTLNNFYGHLPNE-LGKLGRLKFISFSFNKL 102
K LNL G + NL+ L +L + + + L L + L
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160
Query: 103 SGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFN---VIDGNIPSGIG 159
+ + + ++L + + LS + L+ +
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220
Query: 160 NLSNLFDLDLRHNNLQD-------QIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIS-- 210
S + L R + L D ++ I L +E N L P +S
Sbjct: 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280
Query: 211 ------TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGL 264
TIR L++ L + L ++ +T+ + + + L L
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLSTVYSL-LEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339
Query: 265 DLGSNSFSGHIPNT---FGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLV 321
DL N G L L + N+L + + + L + L+ L
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE------ILLTLKNLTSLD 393
Query: 322 LDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIP 381
+ N + ++ + + I + L +L + N+L+ +
Sbjct: 394 ISRNTFHPMPDSCQW--PEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFS 447
Query: 382 TSVGTLQQLQGLSLEDNNL----EGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRL 437
L +LQ L + N L + S+ L ++++ N+L LTSL+++ L
Sbjct: 448 LF---LPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504
Query: 438 GSNKLTSSIPSSLW 451
+N S P +
Sbjct: 505 HTNPWDCSCPRIDY 518
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 1e-38
Identities = 83/424 (19%), Positives = 155/424 (36%), Gaps = 79/424 (18%)
Query: 116 LQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQ 175
++ I P +L++ + L ++ L + +
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57
Query: 176 DQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLP 235
I L NLE L L N ++ + P + N+ + L + +N+ + S + + L
Sbjct: 58 S--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQN-LT 110
Query: 236 NIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNL 295
N+ L L +N+ + L N +K+ L+LG+N + N+ LN L++ + +
Sbjct: 111 NLRELYLNEDNI--SDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV 167
Query: 296 TTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGS 355
++ + N L L L+ N + I
Sbjct: 168 KD----------VTPIANLTDLYSLSLNYNQIEDI------------------------- 192
Query: 356 IPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNG 415
+ +L L T N + P V + +L L + +N + P
Sbjct: 193 --SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP---------- 238
Query: 416 NKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQ 475
LA+L+ L L +G+N+++ +++ L + +N+ SN ++D S +
Sbjct: 239 ----------LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLN 284
Query: 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 535
L L L L+ NQL IG L +L TL L+ N P + SL ++S D +
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342
Query: 536 NNFS 539
Sbjct: 343 QVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 4e-38
Identities = 92/402 (22%), Positives = 163/402 (40%), Gaps = 65/402 (16%)
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRL 226
L + P +L L +++ ++ + +I L + + +
Sbjct: 5 LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA--- 57
Query: 227 PSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLN 286
S+ IEYLT L L+L N + P NL L
Sbjct: 58 ------SIQGIEYLT------------------NLEYLNLNGNQITDISP--LSNLVKLT 91
Query: 287 VLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFY 346
L I TN +T +S+L N L L L+ + + I P + N + + S
Sbjct: 92 NLYIGTNKITD----------ISALQNLTNLRELYLNEDNISDISP--LANLT-KMYSLN 138
Query: 347 AYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY 406
S + N+ GL LT+ + + P + L L LSL N +E P
Sbjct: 139 LGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPL 195
Query: 407 D----LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIP-SSLWSLEYILEINL 461
L + N+++ P +A++T L L++G+NK+T P ++L L + +
Sbjct: 196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLT---WLEI 250
Query: 462 SSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPES 521
+N ++D + V+ L L++L++ NQ+S S + L L +L L +NQ E
Sbjct: 251 GTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEV 306
Query: 522 VGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
+G L +L +L LS N+ + P L +LS + + + +++
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 56/271 (20%), Positives = 111/271 (40%), Gaps = 26/271 (9%)
Query: 57 TIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKL 116
T L NL+ L L + +N + L L ++ ++ N + + ++ L
Sbjct: 101 TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGL 157
Query: 117 QIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQD 176
+++ + + P + NL+ L L ++N I+ P + +L++L N + D
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213
Query: 177 QIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPN 236
P + N+ L SL +G N ++ L P + N+S + L + +NQ S + + L
Sbjct: 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKD-LTK 266
Query: 237 IEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLT 296
++ L + N + + L N S+L L L +N G L +L L + N++T
Sbjct: 267 LKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324
Query: 297 TESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327
+ L + K+ + +
Sbjct: 325 D----------IRPLASLSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 60/252 (23%), Positives = 110/252 (43%), Gaps = 18/252 (7%)
Query: 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSG 104
+ L L+ + + L NL+ + SL++ N+ + L + L +++ + +K+
Sbjct: 113 RELYLNEDNI--SDISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKD 169
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNL 164
P I L+ L +SL N I P L +L+ L A N I P + N++ L
Sbjct: 170 VTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRL 223
Query: 165 FDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224
L + +N + D P + NL L L +GTN +S + A+ +++ +++LN+ SNQ S
Sbjct: 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279
Query: 225 RLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRH 284
S + + L + L L N L + + + L L L N + P +L
Sbjct: 280 --ISVLNN-LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334
Query: 285 LNVLSIRTNNLT 296
++ +
Sbjct: 335 MDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 33/185 (17%), Positives = 69/185 (37%), Gaps = 15/185 (8%)
Query: 390 LQGLSLEDNNLEGSIP----YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS 445
L+ + P + L ++ + L S+ +L + K+ S
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS- 58
Query: 446 IPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLE 505
+ L + +NL+ N + D S + L L L + N+++ S + L +L
Sbjct: 59 -IQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLR 113
Query: 506 TLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGE 565
L L + P + +L + SL+L N+ L ++ L V+++ ++
Sbjct: 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDV 170
Query: 566 IPVKG 570
P+
Sbjct: 171 TPIAN 175
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-37
Identities = 67/332 (20%), Positives = 112/332 (33%), Gaps = 26/332 (7%)
Query: 232 HSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIR 291
H E L + + D L+ + D + N + + +
Sbjct: 9 HHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRT 64
Query: 292 TNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECK 351
L + + + L L S PL P S LQ
Sbjct: 65 GRALKATADLLEDATQP-------GRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAG 115
Query: 352 LGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHL 411
L +P + GL LTL N L +P S+ +L +L+ LS+ +P L
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173
Query: 412 ELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLP 471
+ L +L+ LRL + S +P+S+ +L+ + + + ++ L+ +L
Sbjct: 174 DA---------SGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALG 222
Query: 472 SNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESL 531
+ L L LDL N P G L+ L L +P + L LE L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Query: 532 DLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
DL G ++P + L V ++
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 7e-33
Identities = 57/358 (15%), Positives = 114/358 (31%), Gaps = 37/358 (10%)
Query: 56 GTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSK 115
G+ H + S +L + + L + R + + +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNN 57
Query: 116 LQIMSLRNNNITGPIPNSLFNLS--KLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNN 173
QI + + + L + + L+ + P LS+L + +
Sbjct: 58 PQIETRTGRALKA-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115
Query: 174 LQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHS 233
L ++P + LE+L L N L L P +I +++ +R L++ + LP + +
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLAST 173
Query: 234 LPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTN 293
L L L +P + NL++L L IR +
Sbjct: 174 ----------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216
Query: 294 NLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLG 353
L+ + ++ + KL L L PP+ G + L+ +C
Sbjct: 217 PLS---------ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNL 266
Query: 354 GSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHL 411
++P +I L L L L +P+ + L + + + +
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 3e-32
Identities = 54/356 (15%), Positives = 113/356 (31%), Gaps = 48/356 (13%)
Query: 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNL 217
+ S +L + + + Q + + + N + ++
Sbjct: 8 HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETR 63
Query: 218 HSNQFSGRLPSTIGH-SLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIP 276
+ + P L L + + PD S L + + + +P
Sbjct: 64 TGRALK-ATADLLEDATQPGRVALELR-SVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELP 120
Query: 277 NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIG 336
+T L L++ N L + +S+ + +L L + + P LP +
Sbjct: 121 DTMQQFAGLETLTLARNPLR---------ALPASIASLNRLRELSIRACPELTELPEPLA 171
Query: 337 NFSA--------SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQ 388
+ A +LQS + S+P I NL+ L L + + L+ + ++ L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229
Query: 389 QLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPS 448
+L+ L L + P L+ L L ++P
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGR------------------APLKRLILKDCSNLLTLPL 271
Query: 449 SLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRN---QLSGNIPSTIGAL 501
+ L + +++L LPS + +L ++ + + QL + P A
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 48/218 (22%), Positives = 81/218 (37%), Gaps = 15/218 (6%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106
+ + GL +P + + L +L + N LP + L RL+ +S +
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTEL 166
Query: 107 PTWIG---------VLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSG 157
P + L LQ + L I +P S+ NL L+ L+ + + +
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-LGPA 224
Query: 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNL 217
I +L L +LDLR P G L+ L L + +P I ++ + L+L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 218 HSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSL 255
RLPS I LP + + +L +
Sbjct: 285 RGCVNLSRLPSLIAQ-LPANCIILVP-PHLQAQLDQHR 320
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 6e-07
Identities = 16/91 (17%), Positives = 32/91 (35%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106
L+L G PP G + L L + + LP ++ +L +L+ + +
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Query: 107 PTWIGVLSKLQIMSLRNNNITGPIPNSLFNL 137
P+ I L I+ + + +
Sbjct: 294 PSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 6e-36
Identities = 93/515 (18%), Positives = 183/515 (35%), Gaps = 97/515 (18%)
Query: 58 IPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQ 117
I P + +FL +N +P E + ++++ + P G ++
Sbjct: 3 INPRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 118 IMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ 177
+ LR+ + L+ + + ++P +L + L N+L +
Sbjct: 62 VSRLRDCLDR-----------QAHELELNNLGLS-SLPELPPHLES---LVASCNSLTE- 105
Query: 178 IPTEIGNLQNLESLALGTNNLSGLIP---------------PAIFNISTIRVLNLHSNQF 222
+P +L++L LS L P P + N S ++++++ +N
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 165
Query: 223 SGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL 282
+LP P++E++ N L L N L + +NS +P+ +L
Sbjct: 166 K-KLPD----LPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLPLSL 217
Query: 283 RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASL 342
+ + N L L L N L+ + D+N L LP L + L
Sbjct: 218 ESIVAGN---NILEE----------LPELQNLPFLTTIYADNNLL-KTLPDLPPS----L 259
Query: 343 QSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG 402
++ + L +P+ +L L + F+ L+ P L L+ N +
Sbjct: 260 EALNVRDNYL-TDLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR- 310
Query: 403 SIPYDLCHLE---LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEI 459
S+ LE ++ NKL +P L L N L +P +L+ ++
Sbjct: 311 SLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPELPQNLK---QL 362
Query: 460 NLSSNSLND--SLPSNVQKLKV-------------LRVLDLSRNQLSGNIPSTIGALVDL 504
++ N L + +P +V+ L++ L+ L + N L P + +
Sbjct: 363 HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPES---V 418
Query: 505 ETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539
E L + S + P + + LE ++
Sbjct: 419 EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 4e-33
Identities = 105/470 (22%), Positives = 182/470 (38%), Gaps = 86/470 (18%)
Query: 113 LSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLS---------- 162
+ LQ ++N+T +P N+ +++ + N P G G
Sbjct: 10 NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68
Query: 163 ---NLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHS 219
+L+L + L +P +LESL N+L+ L P ++ ++ V N +
Sbjct: 69 LDRQAHELELNNLGLSS-LPELPP---HLESLVASCNSLTEL-PELPQSLKSLLVDNNNL 123
Query: 220 NQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTF 279
S P +EYL ++ NN + +P+ L N+S L +D+ +NS +P+
Sbjct: 124 KALSD--------LPPLLEYLGVS-NNQLEKLPE-LQNSSFLKIIDVDNNSLK-KLPDLP 172
Query: 280 GNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFS 339
+L + + N L L L N L+ + D+N L LP L +
Sbjct: 173 PSLEFIAAGN---NQLEE----------LPELQNLPFLTAIYADNNSLKK-LPDLPLS-- 216
Query: 340 ASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNN 399
L+S A L E+ NL L + D N L T+P +L+ L +
Sbjct: 217 --LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD 271
Query: 400 LEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEI 459
L L L+++ N S + +L L SN++ S+ SLE E+
Sbjct: 272 LPELPQ-SLTFLDVSENIFS-GLS---ELPPNLYYLNASSNEIR-SLCDLPPSLE---EL 322
Query: 460 NLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIP 519
N+S+N L LP+ +L+ L S N L+ +P +L+ L + N + P
Sbjct: 323 NVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQ---NLKQLHVEYNPLRE-FP 373
Query: 520 ESVGSLI----------------SLESLDLSGNNFSGKIPKSLEALSHLK 553
+ S+ +L+ L + N + P E++ L+
Sbjct: 374 DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDLR 422
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 3e-31
Identities = 92/455 (20%), Positives = 164/455 (36%), Gaps = 69/455 (15%)
Query: 38 DSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISF 97
D ++ L L+ +GL ++P +L SL + N+ LP L L +
Sbjct: 67 DCLDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSL-TELPELPQSLKSLLVDNN 121
Query: 98 SFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSG 157
+ LS P L+ + + NN + +P L N S L+++ N + +P
Sbjct: 122 NLKALSDLPP-------LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL 171
Query: 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNL 217
+L + +N L++ E+ NL L ++ N+L L ++ +
Sbjct: 172 PPSLEFI---AAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVA 222
Query: 218 HSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPN 277
+N + + LP + + NNL+ T+PD + L L++ N + +P
Sbjct: 223 GNNILE--ELPELQN-LPFLTTIYAD-NNLLKTLPDLPPS---LEALNVRDNYLT-DLPE 274
Query: 278 TFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGN 337
+L L+V + L+ + L YL SN + L L +
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPN---------------LYYLNASSNEIRS-LCDLPPS 318
Query: 338 FSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLED 397
L+ KL +P L L FN L +P L+QL +E
Sbjct: 319 ----LEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQNLKQL---HVEY 366
Query: 398 NNLEGSIPYDLCHLE-LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYI 456
N L P +E L N +P +L++L + +N L P S+E
Sbjct: 367 NPLR-EFPDIPESVEDLRMNSHLAEVP---ELPQNLKQLHVETNPLRE-FPDIPESVE-- 419
Query: 457 LEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS 491
++ ++S + D + L +
Sbjct: 420 -DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 6e-30
Identities = 73/421 (17%), Positives = 140/421 (33%), Gaps = 78/421 (18%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIR 213
+P N+ + + + + P G + + L
Sbjct: 26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQA-----------H 74
Query: 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSG 273
L L++ S++ P++E L + N + +P+ + L+ + + S
Sbjct: 75 ELELNNLGL-----SSLPELPPHLESLVAS-CNSLTELPELPQSLKSLLVDNNNLKALSD 128
Query: 274 HIPN---------------TFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLS 318
P N L ++ + N+L + L
Sbjct: 129 LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK---------KLPDLPPS---LE 176
Query: 319 YLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNG 378
++ +N L + P + N L + YA L +P +L + N L
Sbjct: 177 FIAAGNNQLEEL--PELQNLP-FLTAIYADNNSL-KKLPDLPLSLE---SIVAGNNIL-- 227
Query: 379 TIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLE---LNGNKLSGHIPPCLASLTSLREL 435
+ L L + ++N L+ ++P LE + N L+ +P SLT L
Sbjct: 228 EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVS 285
Query: 436 RLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIP 495
+ L+ P+ + +N SSN + SL L L++S N+L +P
Sbjct: 286 ENIFSGLSELPPN-------LYYLNASSNEIR-SLCDL---PPSLEELNVSNNKLI-ELP 333
Query: 496 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQF 555
+ LE L + N +PE +L+ L + N + P E++ L+
Sbjct: 334 ALPP---RLERLIASFNHLAE-VPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRMN 385
Query: 556 N 556
+
Sbjct: 386 S 386
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 8e-23
Identities = 76/394 (19%), Positives = 126/394 (31%), Gaps = 76/394 (19%)
Query: 201 LIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTN--- 257
I P + + ++ HS+ + +P + + + A + P
Sbjct: 2 FINPRNVSNTFLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQRE 59
Query: 258 ----------ASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSF 307
+ L+L + S +P +L L N+LT
Sbjct: 60 MAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESLVASC---NSLT---------EL 106
Query: 308 LSSLTNCRKLSYLVLDSNPLGGILP---------------PLIGNFSASLQSFYAYECKL 352
+ + L + L + P P + N S L+ L
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSS-FLKIIDVDNNSL 165
Query: 353 GGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLE 412
+P +L + N L + L L + ++N+L+ +P LE
Sbjct: 166 -KKLPDLPPSLE---FIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLPLSLE 218
Query: 413 ---LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDS 469
N L P L +L L + +N L ++P SLE +N+ N L
Sbjct: 219 SIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNVRDNYLT-D 271
Query: 470 LPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLE 529
LP Q L L V + + LS P+ L L+ +SN+ I SLE
Sbjct: 272 LPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNE----IRSLCDLPPSLE 320
Query: 530 SLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
L++S N ++P L L S N L
Sbjct: 321 ELNVSNNKLI-ELPALPPRLERL---IASFNHLA 350
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 2e-33
Identities = 70/443 (15%), Positives = 134/443 (30%), Gaps = 33/443 (7%)
Query: 130 IPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLE 189
I N ++ ++ + + + + + S + N+ +LDL N L ++ LE
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 190 SLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIG 249
L L +N L + ++ST+R L+L++N L P+IE L A NN+
Sbjct: 62 LLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISR 113
Query: 250 TIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLS 309
+ L +N + G + L ++ N + T + +
Sbjct: 114 VSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE------- 163
Query: 310 SLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILL 369
+ L +L L N + + + A L++ KL + E + G+ +
Sbjct: 164 LAASSDTLEHLNLQYNFIYDV-KGQV--VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWI 219
Query: 370 TLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCH-----LELNGNKLSGHIPP 424
+L N L I ++ Q L+ L N D + +
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278
Query: 425 CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSL----NDSLPSNVQKLKVL 480
T G+ L + + S + L +
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQ 338
Query: 481 RVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540
R +D + Q I TL + + L+
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QI 397
Query: 541 KIPKSLEALSHLKQFNVSQNMLE 563
++ + E S L+ E
Sbjct: 398 ELQHATEEQSPLQLLRAIVKRYE 420
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-32
Identities = 68/476 (14%), Positives = 153/476 (32%), Gaps = 40/476 (8%)
Query: 63 GNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122
N + VT ++ L + +K + S N LS + +KL++++L
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEI 182
+N + + L +LS L L + N + + ++ L +NN+ +
Sbjct: 67 SNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR-VSCSR 118
Query: 183 GNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTL 242
Q +++ L N ++ L S ++ L+L N+ + + S +E+L L
Sbjct: 119 --GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 243 AINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSA 302
N I + + +KL LDL SN + + F + + +S+R N L
Sbjct: 177 Q-YNFIYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV------ 227
Query: 303 DQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGN 362
+L + L + L N FS + + + + +
Sbjct: 228 ---LIEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEE 282
Query: 363 LRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHI 422
L +L L +++ L L G++ +
Sbjct: 283 CTVPTLGHYGAYCCE---DLPAPFADRLIALKRKEHAL----------LSGQGSETER-L 328
Query: 423 PPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRV 482
+ RE+ + + I + + + +L++ + + + L
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388
Query: 483 LDLSRNQLSGNIPSTIGALVDLETLSLASNQF-QGPIPESVGSLISLESLDLSGNN 537
+ L+ L ++ + + + ++ D+ +
Sbjct: 389 TLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 1e-19
Identities = 54/347 (15%), Positives = 114/347 (32%), Gaps = 24/347 (6%)
Query: 57 TIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKL 116
L +LS L +LD+ N EL ++ + + N +S +
Sbjct: 71 YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVS--CSRGQGK 122
Query: 117 QIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQ 175
+ + L NN IT S+++ L N ID N + L L+L++N +
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 176 DQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLP 235
D + ++ L++L L +N L+ + P + + + ++L +N+ + +
Sbjct: 183 D-VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRF-SQ 237
Query: 236 NIEYLTLAINNL-IGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNN 294
N+E+ L N GT+ D + ++ + + +
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295
Query: 295 LT-TESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLG 353
+ AD+ L + + L + + A + A + +
Sbjct: 296 CEDLPAPFADRLIALKRKEH----ALLSGQGSETERLECERENQ--ARQREIDALKEQYR 349
Query: 354 GSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNL 400
I + + I L L+ + +L G +
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 4e-16
Identities = 40/316 (12%), Positives = 94/316 (29%), Gaps = 36/316 (11%)
Query: 39 SRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFS 98
++ L+ + + + ++ + N + G R++++
Sbjct: 96 LVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152
Query: 99 FNKLSG-SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSG 157
N++ + L+ ++L+ N I + + +KL+ L S N + +
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLA-FMGPE 209
Query: 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNL 217
+ + + + LR+N L I + QNLE L N F+ + RV +
Sbjct: 210 FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ-RVQTV 267
Query: 218 HSNQFSG-----------------------RLPSTIGHSLPNIEYLTLAI----NNLIGT 250
LP+ L ++ A+ +
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER 327
Query: 251 IPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSS 310
+ N ++ +D + I + L + L + S+ +
Sbjct: 328 LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387
Query: 311 LTNCRKLSYLVLDSNP 326
T + + + L
Sbjct: 388 GTLQQAVGQIELQHAT 403
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 7e-08
Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 469 SLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISL 528
++ Q ++ ++ + L + S + +++ L L+ N + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 529 ESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
E L+LS N LE+LS L+ +++ N ++
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 15/77 (19%), Positives = 30/77 (38%)
Query: 494 IPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLK 553
I + + + + + S +++ LDLSGN S L + L+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 554 QFNVSQNMLEGEIPVKG 570
N+S N+L + ++
Sbjct: 62 LLNLSSNVLYETLDLES 78
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 5e-32
Identities = 85/387 (21%), Positives = 161/387 (41%), Gaps = 19/387 (4%)
Query: 162 SNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSN 220
+++ +DL N++ + T LQ+L+ L + +I F +S++ +L L N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 221 QFSGRLPSTIGHSLPNIEYLTLAINNLIGTI--PDSLTNASKLIGLDLGSNSFSGHIPNT 278
QF +L + + L N+E LTL NL G + + + L L L N+ P +
Sbjct: 90 QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 279 -FGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCR-KLSYLVLDSNPLGGILPPLIG 336
F N+R +VL + N + S + +LS + L + G
Sbjct: 149 FFLNMRRFHVLDLTFNKVK--SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206
Query: 337 NFS--ASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLS 394
N S+ + S+ K + + + + +S
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS---FGHTNFKD 263
Query: 395 LEDNNLEGSIPYDLCHLELNGNKLSGHIPPCL-ASLTSLRELRLGSNKLTSSIPSSLWSL 453
++ +G + +L+ +K+ + + + T L +L L N++ ++ W L
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322
Query: 454 EYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASN 512
++L++NLS N L S+ S + + L L VLDLS N + + L +L+ L+L +N
Sbjct: 323 THLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 513 QFQGPIPESV-GSLISLESLDLSGNNF 538
Q + +P+ + L SL+ + L N +
Sbjct: 382 QLKS-VPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-26
Identities = 79/398 (19%), Positives = 136/398 (34%), Gaps = 51/398 (12%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSN 163
+P + + L N+I S L L+ L+ I + LS+
Sbjct: 27 ELPAHVNYVD------LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80
Query: 164 LFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNL-SGLIPPAIF-NISTIRVLNLHSN 220
L L L +N Q+ T L NLE L L NL ++ F ++++ +L L N
Sbjct: 81 LIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 221 QFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTN--ASKLIGLDLGSN--------S 270
P++ ++ L L N + + L N L L S
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
+ L + N + K+ L+L ++ G
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-----FFDAIAGTKIQSLILSNSYNMGS 254
Query: 331 LPP-----------LIGNFSASLQSFYAYECKLGGSIPKEI-GNLRGLILLTLDFNDLNG 378
G ++ +++ + K+ ++ K + + L LTL N++N
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN- 312
Query: 379 TIPTSV-GTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGHIPPCL-ASL 429
I + L L L+L N L GSI L L+L+ N + + L
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGL 370
Query: 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467
+L+EL L +N+L S L + +I L +N +
Sbjct: 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 4e-24
Identities = 83/470 (17%), Positives = 136/470 (28%), Gaps = 99/470 (21%)
Query: 57 TIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGV---L 113
+P H+ +D++LN+ +L L+F+ I L
Sbjct: 27 ELPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN--NTFRGL 78
Query: 114 SKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNN 173
S L I+ L N + FN L+NL L L N
Sbjct: 79 SSLIILKLDYNQFLQ-LETGAFN-----------------------GLANLEVLTLTQCN 114
Query: 174 LQD-QIPTEI-GNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQFSGRLPSTI 230
L + L +LE L L NN+ + P + F N+ VL+L N+ +
Sbjct: 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEED 173
Query: 231 GHSLP--NIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVL 288
+ + L L+ L D+ + L
Sbjct: 174 LLNFQGKHFTLLRLSSITL----------------QDMNEYWLGWEKCGNPFKNTSITTL 217
Query: 289 SIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAY 348
+ N + K+ L+L ++ G +F
Sbjct: 218 DLSGNGFKESMAKR-----FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272
Query: 349 ECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSV-GTLQQLQGLSLEDNNLEGSIPYD 407
E G+ L + + + SV L+ L+L N +
Sbjct: 273 EA-------------SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN------ 312
Query: 408 LCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSL 466
I LT L +L L N L S +L+ + ++LS N +
Sbjct: 313 -------------KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
Query: 467 NDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQ 515
+L L L+ L L NQL L L+ + L +N +
Sbjct: 360 R-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 8e-13
Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 6/142 (4%)
Query: 403 SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPS-SLWSLEYILEINL 461
+P + +++L+ N ++ + L L+ L++ I + + L ++ + L
Sbjct: 27 ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 462 SSNSLNDSLPSNV-QKLKVLRVLDLSRNQL-SGNIPSTI-GALVDLETLSLASNQFQGPI 518
N L + L L VL L++ L + L LE L L N +
Sbjct: 87 DYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145
Query: 519 PESV-GSLISLESLDLSGNNFS 539
P S ++ LDL+ N
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVK 167
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 9e-32
Identities = 75/416 (18%), Positives = 143/416 (34%), Gaps = 81/416 (19%)
Query: 113 LSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHN 172
+ ++++ + +T +P+ L + L N + ++P+ L L ++ N
Sbjct: 39 NNGNAVLNVGESGLTT-LPDCLPA--HITTLVIPDNNLT-SLPALPPELRTL---EVSGN 91
Query: 173 NLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGH 232
L +P L L + +L L S + L + NQ + LP
Sbjct: 92 QLTS-LPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPV---- 138
Query: 233 SLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRT 292
P ++ L+++ +N + ++P + L L +N + +P L+ L+V
Sbjct: 139 LPPGLQELSVS-DNQLASLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQELSVSD--- 190
Query: 293 NNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKL 352
N L + LP L L +AY +L
Sbjct: 191 NQLAS---------------------------------LPTLPSE----LYKLWAYNNRL 213
Query: 353 GGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY---DLC 409
S+P L+ L + N L ++P +L+ L + N L S+P L
Sbjct: 214 -TSLPALPSGLK---ELIVSGNRLT-SLPVLPS---ELKELMVSGNRLT-SLPMLPSGLL 264
Query: 410 HLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS---SIPSSLWSLEYILEINLSSNSL 466
L + N+L+ +P L L+S + L N L+ + S + +
Sbjct: 265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMA 323
Query: 467 NDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV 522
S P + L + L + P+ + E + A + F + E+
Sbjct: 324 GASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETE 379
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 8e-31
Identities = 75/410 (18%), Positives = 138/410 (33%), Gaps = 79/410 (19%)
Query: 161 LSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSN 220
+ L++ + L +P + ++ +L + NNL+ L P + R L + N
Sbjct: 39 NNGNAVLNVGESGLTT-LPDCLPA--HITTLVIPDNNLTSL-PALPPEL---RTLEVSGN 91
Query: 221 QFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFG 280
Q + LP L + + + +L +P L L + N + +P
Sbjct: 92 QLT-SLPVLPPG-LLELSIFSNPLTHLP-ALPSGLCK------LWIFGNQLT-SLPVLPP 141
Query: 281 NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSA 340
L+ L+V N L + LP L
Sbjct: 142 GLQELSVSD---NQLAS---------------------------------LPALPSE--- 162
Query: 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNL 400
L +AY +L S+P L+ L++ N L ++PT L +L + +L
Sbjct: 163 -LCKLWAYNNQLT-SLPMLPSGLQ---ELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSL 216
Query: 401 EGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIN 460
L L ++GN+L+ +P + L+EL + N+LTS +P L ++
Sbjct: 217 PALPS-GLKELIVSGNRLT-SLPV---LPSELKELMVSGNRLTS-LPMLPSGLL---SLS 267
Query: 461 LSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLS---LASNQFQGP 517
+ N L LP ++ L ++L N LS + + S + +
Sbjct: 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326
Query: 518 IPESVGSLISLESLDLSGNNFSG----KIPKSLEALSHLKQFNVSQNMLE 563
P +L + L + F++ + L
Sbjct: 327 APRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLS 376
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 4e-23
Identities = 83/488 (17%), Positives = 147/488 (30%), Gaps = 103/488 (21%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106
LN+ GL T+P L + +L + +N LP +L L S N+L+ S+
Sbjct: 45 LNVGESGLT-TLPDCLPAH--ITTLVIP-DNNLTSLPALPPELRTL---EVSGNQLT-SL 96
Query: 107 PTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFD 166
P L +L I S ++ S L
Sbjct: 97 PVLPPGLLELSIFSNPLTHLP-------------------------------ALPSGLCK 125
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRL 226
L + N L +P LQ L++ NQ + L
Sbjct: 126 LWIFGNQLTS-LPVLPPGLQE---------------------------LSVSDNQLA-SL 156
Query: 227 PSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLN 286
P+ + L NN + ++P + L L + N + +P L L
Sbjct: 157 PALPS----ELCKLWAY-NNQLTSLPMLPSG---LQELSVSDNQLA-SLPTLPSELYKLW 207
Query: 287 VLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFY 346
+ N LT S + + L L++ N L LP L L+
Sbjct: 208 AYN---NRLT---------SLPALPSG---LKELIVSGNRLTS-LPVLPSE----LKELM 247
Query: 347 AYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY 406
+L S+P L L++ N L +P S+ L ++LE N L
Sbjct: 248 VSGNRL-TSLPMLPSGLL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302
Query: 407 DLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSL 466
L + I +A ++ RE R + + +
Sbjct: 303 ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362
Query: 467 NDSLPSNVQKLKVLRVLDLSRN-QLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL 525
+++ ++ ++ + ++ I S + L + E L + S
Sbjct: 363 DNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRANTFAMATEATSSCEDR 422
Query: 526 ISLESLDL 533
++ +
Sbjct: 423 VTFFLHQM 430
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 8/88 (9%)
Query: 480 LRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539
VL++ + L+ +P + A + TL + N +P L +L++SGN +
Sbjct: 42 NAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTS-LPALPPEL---RTLEVSGNQLT 94
Query: 540 GKIPKSLEALSHLKQFNVSQNMLEGEIP 567
+P L L F+ L
Sbjct: 95 -SLPVLPPGLLELSIFSNPLTHLPALPS 121
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 8e-31
Identities = 84/348 (24%), Positives = 133/348 (38%), Gaps = 50/348 (14%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIR 213
+P GI + LDL N ++ E + +LE L L N +S + P A N+ +R
Sbjct: 26 VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83
Query: 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPD-SLTNASKLIGLDLGSNSFS 272
L L SN+ +P + L N+ L ++ N I + D + L L++G N
Sbjct: 84 TLGLRSNRLK-LIPLGVFTGLSNLTKLDIS-ENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
Query: 273 GHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILP 332
F L L L++ NLT+ + A L++ L L L + I
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEA--------LSHLHGLIVLRLRHLNINAIRD 193
Query: 333 PLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQG 392
+F L L +L + T+ + L
Sbjct: 194 ---YSFK----------------------RLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228
Query: 393 LSLEDNNLEGSIPYD-------LCHLELNGNKLSGHIPPC-LASLTSLRELRLGSNKLTS 444
LS+ NL ++PY L L L+ N +S I L L L+E++L +L
Sbjct: 229 LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAV 286
Query: 445 SIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLS 491
P + L Y+ +N+S N L +L +V + L L L N L+
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-29
Identities = 74/350 (21%), Positives = 133/350 (38%), Gaps = 54/350 (15%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSN 163
++P G+ ++ +++ L N I + + LE L+ + N++ + G NL N
Sbjct: 25 AVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFN 81
Query: 164 LFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQ 221
L L LR N L+ IP + L NL L + N + ++ +F ++ ++ L + N
Sbjct: 82 LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDND 139
Query: 222 FSGRLPSTIGHSLPNIEYLTLAINNLIGTIPD-SLTNASKLIGLDLGSNSFSGHIPNTFG 280
+ L ++E LTL + +IP +L++ LI L L + + +F
Sbjct: 140 LV-YISHRAFSGLNSLEQLTLE-KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197
Query: 281 NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSA 340
L L VL I + L+ L + L + P L
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPN--------CLYGLNLTSLSITHCNLTAV-PYLA----- 243
Query: 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNL 400
+ +L L L L +N ++ + + L +LQ + L L
Sbjct: 244 -------------------VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 401 EGSIPYD-------LCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKL 442
+ L L ++GN+L+ + S+ +L L L SN L
Sbjct: 285 A-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 8e-29
Identities = 80/348 (22%), Positives = 126/348 (36%), Gaps = 50/348 (14%)
Query: 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTI-PDSLTNASK 260
+P I + R+L+L N+ L S P++E L L N++ + P + N
Sbjct: 26 VPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELN-ENIVSAVEPGAFNNLFN 81
Query: 261 LIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYL 320
L L L SN F L +L L I N + + L L
Sbjct: 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM--------FQDLYNLKSL 133
Query: 321 VLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTI 380
+ N L I FS L L LTL+ +L +I
Sbjct: 134 EVGDNDLVYISH---RAFS----------------------GLNSLEQLTLEKCNLT-SI 167
Query: 381 PTSV-GTLQQLQGLSLEDNNLEGSIP-------YDLCHLELNGNKLSGHIPPCLASLTSL 432
PT L L L L N+ +I Y L LE++ + P +L
Sbjct: 168 PTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226
Query: 433 RELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLS 491
L + LT+ ++ L Y+ +NLS N + ++ ++ +L L+ + L QL+
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGGQLA 285
Query: 492 GNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539
P L L L+++ NQ S+ +LE+L L N +
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-24
Identities = 68/313 (21%), Positives = 111/313 (35%), Gaps = 41/313 (13%)
Query: 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKL 102
+ L+L + + L L++ N P L L+ + N+L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 103 SGSIPTWI-GVLSKLQIMSLRNNNITGPIPNSLF-NLSKLEMLQASFNVIDGNIPSGI-G 159
IP + LS L + + N I + + +F +L L+ L+ N + I
Sbjct: 93 K-LIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDL-VYISHRAFS 149
Query: 160 NLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL------------------ 201
L++L L L NL + +L L L L N++ +
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Query: 202 ------IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP-DS 254
+ P + L++ + +P L + +L L+ N I TI
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLS-YNPISTIEGSM 267
Query: 255 LTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNC 314
L +L + L + P F L +L VL++ N LTT S S+ N
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV-----FHSVGN- 321
Query: 315 RKLSYLVLDSNPL 327
L L+LDSNPL
Sbjct: 322 --LETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 2e-21
Identities = 65/331 (19%), Positives = 110/331 (33%), Gaps = 57/331 (17%)
Query: 245 NNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQ 304
+P+ + ++ LDLG N + F + HL L + N ++ A
Sbjct: 20 RKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-- 75
Query: 305 WSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEI-GNL 363
N L L L SN L IP + L
Sbjct: 76 ------FNNLFNLRTLGLRSNRLK--------------------------LIPLGVFTGL 103
Query: 364 RGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIP 423
L L + N + + L L+ L + DN+L I
Sbjct: 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YIS-----------------H 145
Query: 424 PCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVL 483
+ L SL +L L LTS +L L ++ + L ++N + ++L L+VL
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205
Query: 484 DLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIP 543
++S + ++L +LS+ +V L+ L L+LS N S
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265
Query: 544 KSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
L L L++ + L + +F+
Sbjct: 266 SMLHELLRLQEIQLVGGQLA-VVE-PYAFRG 294
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 3e-17
Identities = 44/219 (20%), Positives = 83/219 (37%), Gaps = 6/219 (2%)
Query: 57 TIPPHL-GNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSK 115
+ ++ +L L SL+V N+ L L+ ++ L+ + L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177
Query: 116 LQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQ 175
L ++ LR+ NI S L +L++L+ S + NL L + H NL
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237
Query: 176 DQIPTE-IGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSL 234
+P + +L L L L N +S + + + ++ + L Q + + L
Sbjct: 238 -AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGL 295
Query: 235 PNIEYLTLAINNLIGTIP-DSLTNASKLIGLDLGSNSFS 272
+ L ++ N + T+ + L L L SN +
Sbjct: 296 NYLRVLNVS-GNQLTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 6e-11
Identities = 36/199 (18%), Positives = 75/199 (37%), Gaps = 7/199 (3%)
Query: 3 LISFTSNLFQSHLAIMLLYLLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHL 62
L+ + F ++ L L L+ + S + L L + +
Sbjct: 140 LVYISHRAFSGLNSLEQLTL---EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196
Query: 63 GNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTW-IGVLSKLQIMSL 121
L L L+++ + + L +S + L+ ++P + L L+ ++L
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNL 255
Query: 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSNLFDLDLRHNNLQDQIPT 180
N I+ + L L +L+ +Q + + L+ L L++ N L +
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEES 314
Query: 181 EIGNLQNLESLALGTNNLS 199
++ NLE+L L +N L+
Sbjct: 315 VFHSVGNLETLILDSNPLA 333
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 3e-30
Identities = 93/480 (19%), Positives = 167/480 (34%), Gaps = 26/480 (5%)
Query: 98 SFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSG 157
S N L +P + K I+++ N I+ + + +LSKL +L S N I S
Sbjct: 8 SKNGLI-HVPK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV 64
Query: 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLN 216
L LDL HN L I NL+ L L N L F N+S ++ L
Sbjct: 65 FKFNQELEYLDLSHNKLVK-IS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG 121
Query: 217 LHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTN--ASKLIGLDLGSNSFSGH 274
L + I H + L L P+ L + L + + F
Sbjct: 122 LSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI 181
Query: 275 IPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPL 334
+ + + +L + +I+ + S L + L
Sbjct: 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241
Query: 335 IGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGT-----LQQ 389
+ ++ F KL G + + G L L + + + +
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301
Query: 390 LQGLSLEDNNLEG------SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLT 443
+ + + S HL+ + N L+ + LT L L L N+L
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361
Query: 444 S--SIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGA 500
I ++ + ++++S NS++ K L L++S N L+ I +
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-- 419
Query: 501 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQN 560
++ L L SN+ + IP+ V L +L+ L+++ N + L+ L++ + N
Sbjct: 420 PPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-29
Identities = 90/461 (19%), Positives = 167/461 (36%), Gaps = 29/461 (6%)
Query: 98 SFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSG 157
S N +S + I LSKL+I+ + +N I + +LE L S N + I
Sbjct: 29 SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-VKISCH 87
Query: 158 IGNLSNLFDLDLRHNNLQD-QIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLN 216
NL LDL N I E GN+ L+ L L T +L I +++ +VL
Sbjct: 88 --PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145
Query: 217 LHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIP 276
+ + + L + +L I + + S +L ++ +
Sbjct: 146 VLGETYGEKED---PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202
Query: 277 NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRK------LSYLVLDSNPLGGI 330
+ + + ++TN + + + + +S + + Y + + L G
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262
Query: 331 L----PPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGT 386
L G +L G + + +
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322
Query: 387 LQQLQGLSLEDNNLEGSIPY------DLCHLELNGNKLS--GHIPPCLASLTSLRELRLG 438
+ L +N L ++ +L L L N+L I + SL++L +
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382
Query: 439 SNKLTSSIPSSLWS-LEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPST 497
N ++ S + +L +N+SSN L D++ + ++VLDL N++ +IP
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQ 439
Query: 498 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNF 538
+ L L+ L++ASNQ + L SL+ + L N +
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 76/419 (18%), Positives = 141/419 (33%), Gaps = 32/419 (7%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIR 213
+P + L++ N + + ++I +L L L + N + L +
Sbjct: 15 VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72
Query: 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDS--LTNASKLIGLDLGSNSF 271
L+L N+ + H N+++L L+ N +P N S+L L L +
Sbjct: 73 YLDLSHNKLVK-ISC---HPTVNLKHLDLS-FNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 272 SGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLS-YLVLDSNPLGGI 330
+L VL + + L + S ++V +N
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKED-------PEGLQDFNTESLHIVFPTNKEFHF 180
Query: 331 LPPLIGNFSASLQ----SFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGT 386
+ + A+L+ + K + L L N++ T + +
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240
Query: 387 LQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSI 446
LQ + ++ ++ +++L G SL +L ++ S+
Sbjct: 241 LQLVWHTTVWYFSIS--------NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292
Query: 447 PSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLET 506
+ N + + K+ LD S N L+ + G L +LET
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352
Query: 507 LSLASNQFQ--GPIPESVGSLISLESLDLSGNNFSGKIPKSL-EALSHLKQFNVSQNML 562
L L NQ + I E + SL+ LD+S N+ S K L N+S N+L
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 7e-19
Identities = 65/418 (15%), Positives = 132/418 (31%), Gaps = 52/418 (12%)
Query: 163 NLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222
+ F +D N L +P ++ L + N +S L I ++S +R+L + N+
Sbjct: 1 SEFLVDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRI 57
Query: 223 SGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSF-SGHIPNTFGN 281
L ++ +EYL L+ N L+ N L LDL N+F + I FGN
Sbjct: 58 Q-YLDISVFKFNQELEYLDLSHNKLVKISCHPTVN---LKHLDLSFNAFDALPICKEFGN 113
Query: 282 LRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSAS 341
+ L L + T +L S + + + L++
Sbjct: 114 MSQLKFLGLSTTHLEKSS--------VLPIAHLNISKVLLVLGETY-------------- 151
Query: 342 LQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLE 401
++ L+ +L + + +LE +N++
Sbjct: 152 -------------GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198
Query: 402 GSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINL 461
+ + C L+ L+ S +L + N I +W + ++
Sbjct: 199 CVLEDNKCSYFLS--ILAKLQTNPKLSNLTLNNIETTWNSFIR-ILQLVWHTT-VWYFSI 254
Query: 462 SSNSLNDSLPSNV-----QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG 516
S+ L L LK L + + + ++ + + +
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314
Query: 517 PIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
+ LD S N + + ++ L+ L+ + N L+ +
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 2e-18
Identities = 62/408 (15%), Positives = 135/408 (33%), Gaps = 40/408 (9%)
Query: 87 GKLGRLKFISFSFNKL-SGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQA 145
LK + SFN + I G +S+L+ + L ++ + +L+ ++L
Sbjct: 87 HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146
Query: 146 SFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPA 205
L + L ++ I ++ L +N+ ++
Sbjct: 147 LGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204
Query: 206 IFNISTIRVLNLHSNQFSGRLPSTIGHSLPN-------------IEYLTLAINNLIGTIP 252
+ + L +N L + N + Y +++ L G +
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264
Query: 253 DSLTNAS-----KLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSF 307
+ S L + S+ F + ++N+ + +
Sbjct: 265 FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM--------VH 316
Query: 308 LSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIG---NLR 364
+ + +L +N L + G+ + L++ +L + K ++
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLK-ELSKIAEMTTQMK 374
Query: 365 GLILLTLDFNDLNGTIPTSV-GTLQQLQGLSLEDNNLE----GSIPYDLCHLELNGNKLS 419
L L + N ++ + L L++ N L +P + L+L+ NK+
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK 434
Query: 420 GHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467
IP + L +L+EL + SN+L S L + +I L +N +
Sbjct: 435 -SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 8e-11
Identities = 41/304 (13%), Positives = 91/304 (29%), Gaps = 28/304 (9%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106
L++S + ++ + L+ N L I ++N +
Sbjct: 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241
Query: 107 PTWIGVLSKLQIMSLRNNNITGPIPNSLFNLS-----KLEMLQASFNVIDGNIPSGIGNL 161
+ + S+ N + G + F+ S L + Q +V
Sbjct: 242 QLVW--HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299
Query: 162 SNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQ 221
SN+ + + + + L N L+ + +++ + L L NQ
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359
Query: 222 FSGRLPSTIG--HSLPNIEYLTLAINNLIGTIPDSL-TNASKLIGLDLGSNSFSGHIPNT 278
L + +++ L ++ N++ + L+ L++ SN + I
Sbjct: 360 LK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418
Query: 279 FGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLT---------------NCRKLSYLVLD 323
+ VL + +N + + + L L L + L
Sbjct: 419 L--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476
Query: 324 SNPL 327
+NP
Sbjct: 477 TNPW 480
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 4e-30
Identities = 75/410 (18%), Positives = 135/410 (32%), Gaps = 70/410 (17%)
Query: 130 IPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLE 189
I ++L + D L+N + +++ ++ + + + +E
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 190 SLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIG 249
L L + + A TI+ L + N LP + ++P + L L N+L
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS 131
Query: 250 TIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLS 309
N KL L + +N+ +TF L L + +N LT S +
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL-----IP 186
Query: 310 SLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILL 369
SL + + N L + + L
Sbjct: 187 SLFH------ANVSYNLL------------------------------STLAIPIAVEEL 210
Query: 370 TLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASL 429
N +N + +L L L+ NNL L +
Sbjct: 211 DASHNSIN-VVRG--PVNVELTILKLQHNNLTD--------------------TAWLLNY 247
Query: 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQ 489
L E+ L N+L + ++ + + +S+N L +L Q + L+VLDLS N
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 306
Query: 490 LSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539
L ++ LE L L N + + +L++L LS N++
Sbjct: 307 LL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 4e-26
Identities = 65/382 (17%), Positives = 128/382 (33%), Gaps = 72/382 (18%)
Query: 113 LSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSNLFDLDLRH 171
L+ +I++ +N+ + L + ++E+L + I+ I + + L +
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGF 102
Query: 172 NNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIG 231
N ++ P N+ L L L N+LS L N + L++ +N R+
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTF 161
Query: 232 HSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIR 291
+ +++ L L+ +N + + SL L ++ N S T + L
Sbjct: 162 QATTSLQNLQLS-SNRLTHVDLSLI--PSLFHANVSYNLLS-----TLAIPIAVEELDAS 213
Query: 292 TNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECK 351
N++ +L+ L L N L
Sbjct: 214 HNSINVVRGPV-----------NVELTILKLQHNNL------------TDTAWL------ 244
Query: 352 LGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHL 411
N GL+ + L +N+L + +Q+L+ L + +N L
Sbjct: 245 ---------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV---------- 285
Query: 412 ELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLP 471
+ + +L+ L L N L + + + + + L NS+ +L
Sbjct: 286 ---------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK 334
Query: 472 SNVQKLKVLRVLDLSRNQLSGN 493
+ L+ L LS N N
Sbjct: 335 LST--HHTLKNLTLSHNDWDCN 354
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 7e-25
Identities = 65/354 (18%), Positives = 119/354 (33%), Gaps = 51/354 (14%)
Query: 215 LNLHSNQFSGRLPSTIGH-SLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSG 273
++H + + + +L N + +T + + L + ++ L+L
Sbjct: 24 YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 83
Query: 274 HIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPP 333
F + L + N + N L+ LVL+ N L
Sbjct: 84 IDTYAFAYAHTIQKLYMGFNAIRYLPPHV--------FQNVPLLTVLVLERNDLS----- 130
Query: 334 LIGNFSASLQSFYAYECKLGGSIPKEI-GNLRGLILLTLDFNDLNGTIPTSVGTLQQLQG 392
S+P+ I N L L++ N+L + LQ
Sbjct: 131 ---------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169
Query: 393 LSLEDNNLEG---SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSS 449
L L N L S+ L H ++ N LS LA ++ EL N +
Sbjct: 170 LQLSSNRLTHVDLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV 224
Query: 450 LWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSL 509
L + L N+L D + + L +DLS N+L + + LE L +
Sbjct: 225 NVELT---ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279
Query: 510 ASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
++N+ + + +L+ LDLS N+ + ++ L+ + N +
Sbjct: 280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 1e-18
Identities = 60/323 (18%), Positives = 107/323 (33%), Gaps = 58/323 (17%)
Query: 250 TIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLS 309
I +L + + + + L + +++ + + + ++
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL------- 64
Query: 310 SLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEI-GNLRGLIL 368
L + R++ L L+ + I +
Sbjct: 65 -LDSFRQVELLNLNDLQIE--------------------------EIDTYAFAYAHTIQK 97
Query: 369 LTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGH 421
L + FN + P + L L LE N+L S+P L L ++ N L
Sbjct: 98 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-R 155
Query: 422 IPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVL 480
I + TSL+ L+L SN+LT S + SL N+S N L S + +
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF---HANVSYNLL-----STLAIPIAV 207
Query: 481 RVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540
LD S N ++ + V+L L L N + + L +DLS N
Sbjct: 208 EELDASHNSIN-VVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262
Query: 541 KIPKSLEALSHLKQFNVSQNMLE 563
+ + L++ +S N L
Sbjct: 263 IMYHPFVKMQRLERLYISNNRLV 285
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 5e-18
Identities = 55/272 (20%), Positives = 94/272 (34%), Gaps = 28/272 (10%)
Query: 57 TIPPH-LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSK 115
+PPH N+ L L + N+ +L +S S N L +
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166
Query: 116 LQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQ 175
LQ + L +N +T + SL L S+N++ S + + +LD HN++
Sbjct: 167 LQNLQLSSNRLTH-VDLSLI--PSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN 218
Query: 176 DQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLP 235
+ + L L L NNL+ + N + ++L N+ ++ +
Sbjct: 219 -VVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQ 272
Query: 236 NIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNL 295
+E L ++ NN + + L LDL N H+ L L + N++
Sbjct: 273 RLERLYIS-NNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330
Query: 296 TTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327
T S L L L N
Sbjct: 331 VTLKLST-----------HHTLKNLTLSHNDW 351
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 7e-13
Identities = 47/229 (20%), Positives = 90/229 (39%), Gaps = 21/229 (9%)
Query: 45 KALNLSGMGLGGTIPPH-LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS 103
L++S L I + L +L ++ N H+ L + L + S+N L
Sbjct: 144 TTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLL- 198
Query: 104 GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSN 163
+ + + ++ + +N+I + + +L +L+ N + + + N
Sbjct: 199 ----STLAIPIAVEELDASHNSINV-VRGPVN--VELTILKLQHNNLTD--TAWLLNYPG 249
Query: 164 LFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFS 223
L ++DL +N L+ + +Q LE L + N L + I T++VL+L N
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 308
Query: 224 GRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFS 272
+ +E L L +N I T+ L+ L L L N +
Sbjct: 309 -HVERNQP-QFDRLENLYLD-HNSIVTLK--LSTHHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 14/125 (11%), Positives = 41/125 (32%)
Query: 439 SNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTI 498
I S+L ++++ + + L +++ + + + +
Sbjct: 6 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65
Query: 499 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVS 558
+ +E L+L Q + + +++ L + N P + + L +
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125
Query: 559 QNMLE 563
+N L
Sbjct: 126 RNDLS 130
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-29
Identities = 77/404 (19%), Positives = 137/404 (33%), Gaps = 57/404 (14%)
Query: 144 QASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPT-----EIGNLQNLESLALGTNNL 198
Q +NV + + +D ++ Q E L N + + + +
Sbjct: 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63
Query: 199 SGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNA 258
L + + + +LNL+ Q + + I+ L + N + P N
Sbjct: 64 RKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122
Query: 259 SKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLS 318
L L L N S F N L LS+ NNL L
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--------FQATTSLQ 174
Query: 319 YLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNG 378
L L SN L + ++ + L + +N L
Sbjct: 175 NLQLSSNRLTHV----------------------------DLSLIPSLFHANVSYNLL-- 204
Query: 379 TIPTSVGTLQQLQGLSLEDNNL---EGSIPYDLCHLELNGNKLSGHIPPCLASLTSLREL 435
+++ ++ L N++ G + +L L+L N L+ L + L E+
Sbjct: 205 ---STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEV 259
Query: 436 RLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIP 495
L N+L + ++ + + +S+N L +L Q + L+VLDLS N L ++
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVE 317
Query: 496 STIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539
LE L L N + + +L++L LS N++
Sbjct: 318 RNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-25
Identities = 82/504 (16%), Positives = 166/504 (32%), Gaps = 43/504 (8%)
Query: 57 TIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKL 116
I +L + + + + E L K ++F + + + ++
Sbjct: 18 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77
Query: 117 QIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSNLFDLDLRHNNLQ 175
++++L + I + ++ L FN I +P + N+ L L L N+L
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136
Query: 176 DQIPTEI-GNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSL 234
+P I N L +L++ NNL + ++++ L L SN+ + + +
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLI 191
Query: 235 PNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNN 294
P++ + ++ N L +L + LD NS + L L ++ NN
Sbjct: 192 PSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNN 243
Query: 295 LTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGG 354
LT + L N L + L N L I+ L+ Y +L
Sbjct: 244 LTD----------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRL-V 291
Query: 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD----LCH 410
++ + L +L L N L + + +L+ L L+ N++ ++ L +
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKN 349
Query: 411 LELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSL 470
L L+ N A ++ + I Y LE L +
Sbjct: 350 LTLSHNDWDC--NSLRALFRNVARPAVDDADQHCKID-------YQLEHGLCCKESDKPY 400
Query: 471 PSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLES 530
+ + L + + G +T + Q P+ + +
Sbjct: 401 LDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNE 460
Query: 531 LDLSGNNFSGKIPKSLEALSHLKQ 554
L + + + + L L
Sbjct: 461 LRAEVQQLTNEQIQQEQLLQGLHA 484
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 2e-15
Identities = 39/223 (17%), Positives = 80/223 (35%), Gaps = 18/223 (8%)
Query: 349 ECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD- 407
I + + +D + TL + ++ +++ + +P
Sbjct: 12 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAAL 70
Query: 408 ------LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINL 461
+ L LN ++ A ++++L +G N + P ++ + + L
Sbjct: 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130
Query: 462 SSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPE 520
N L+ SLP + L L +S N L T A L+ L L+SN+ +
Sbjct: 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDL 188
Query: 521 SVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
+ SL ++S N S +L +++ + S N +
Sbjct: 189 --SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN 224
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 4e-28
Identities = 62/362 (17%), Positives = 123/362 (33%), Gaps = 47/362 (12%)
Query: 130 IPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLE 189
I N ++ ++ + + + + + S + N+ +LDL N L ++ LE
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 190 SLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIG 249
L L +N L + ++ST+R L+L++N L P+IE L A NN I
Sbjct: 62 LLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAA-NNNIS 112
Query: 250 TIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLS 309
+ S + L +N + G + L ++ N + T + + +
Sbjct: 113 RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAA 166
Query: 310 SLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILL 369
S L +L L N + + + A L++ KL + E + G+ +
Sbjct: 167 SSDT---LEHLNLQYNFIYDV-KGQV--VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWI 219
Query: 370 TLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASL 429
+L N L I ++ Q L+ L N D +
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-----------------FSKN 261
Query: 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQ 489
++ + + K + ++ + + LP R++ L +
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYG---AYCCEDLP----APFADRLIALGHHH 314
Query: 490 LS 491
Sbjct: 315 HH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 53/301 (17%), Positives = 107/301 (35%), Gaps = 50/301 (16%)
Query: 251 IPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSS 310
I + N ++ + +S + + + ++ L + N L+ S++
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-------- 53
Query: 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLT 370
L KL L L SN L L + +L L L
Sbjct: 54 LAPFTKLELLNLSSNVLYETLD---------------------------LESLSTLRTLD 86
Query: 371 LDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD----LCHLELNGNKLSGHIPPCL 426
L+ N + + ++ L +NN+ + ++ L NK++
Sbjct: 87 LNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDE 140
Query: 427 ASLTSLRELRLGSNKLTS-SIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDL 485
+ ++ L L N++ + + S + + +NL N + + V L+ LDL
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDL 198
Query: 486 SRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKS 545
S N+L+ + + + +SL +N+ I +++ +LE DL GN F +
Sbjct: 199 SSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256
Query: 546 L 546
Sbjct: 257 F 257
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 5e-26
Identities = 53/283 (18%), Positives = 105/283 (37%), Gaps = 22/283 (7%)
Query: 64 NLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRN 123
N + VT ++ L + +K + S N LS + +KL++++L +
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 124 NNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIG 183
N + + L +LS L L + N + + ++ L +NN+ +
Sbjct: 68 NVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR-VSCSR- 118
Query: 184 NLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLA 243
Q +++ L N ++ L S ++ L+L N+ + + S +E+L L
Sbjct: 119 -GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 244 INNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSAD 303
N I + +KL LDL SN + + F + + +S+R N L
Sbjct: 178 -YNFIYDVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV------- 227
Query: 304 QWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFY 346
+L + L + L N + + +Q+
Sbjct: 228 --LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 44/257 (17%), Positives = 93/257 (36%), Gaps = 16/257 (6%)
Query: 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK 101
R K ++ L + + + LD++ N +L +L+ ++ S N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 102 LSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNL 161
L ++ + LS L+ + L NN + L +E L A+ N I +
Sbjct: 70 LYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCSR--G 119
Query: 162 SNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSN 220
++ L +N + + G ++ L L N + + + + T+ LNL N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 221 QFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFG 280
+ + ++ L L+ +N + + +A+ + + L +N I
Sbjct: 180 FIY-DVKGQV--VFAKLKTLDLS-SNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234
Query: 281 NLRHLNVLSIRTNNLTT 297
++L +R N
Sbjct: 235 FSQNLEHFDLRGNGFHC 251
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 5e-20
Identities = 42/216 (19%), Positives = 83/216 (38%), Gaps = 19/216 (8%)
Query: 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLC----- 409
+I + N + + + L + + + ++ L L N L DL
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 410 -HLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLND 468
L L+ N L L SL++LR L L +N + L I ++ ++N+++
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS- 112
Query: 469 SLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG-PIPESVGSLIS 527
+ + + + + L+ N+++ G ++ L L N+ E S +
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 528 LESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
LE L+L N + + + LK ++S N L
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA 204
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 4e-27
Identities = 92/475 (19%), Positives = 176/475 (37%), Gaps = 31/475 (6%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSN 163
+P + + + +SL N+I+ + LS+L +L+ S N I ++ + +
Sbjct: 45 HVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD 101
Query: 164 LFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQF 222
L LD+ HN LQ+ I + +L L L N+ L F N++ + L L + +F
Sbjct: 102 LEYLDVSHNRLQN-ISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Query: 223 SGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL 282
+ H + L L ++ G +SL L L + S ++
Sbjct: 159 RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHLVFHPNSLFSVQVNMSV 217
Query: 283 RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF--SA 340
L L + L E+ +FLS LT L + L + F
Sbjct: 218 NALGHLQLSNIKLNDENCQ-RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276
Query: 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGT-----LQQLQGLSL 395
++ Y + I +E L +L + + ++ L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336
Query: 396 EDNNLEG------SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS--SIP 447
++ P L N + + ++L L+ L L N L + +
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396
Query: 448 SSLWSLEYILEINLSSNSLNDSLPSN-VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLET 506
++ + +++S NSLN + + VL+LS N L+G++ + ++
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKV 454
Query: 507 LSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPK-SLEALSHLKQFNVSQN 560
L L +N+ IP+ V L +L+ L+++ N +P + L+ L+ + N
Sbjct: 455 LDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 2e-15
Identities = 62/402 (15%), Positives = 120/402 (29%), Gaps = 36/402 (8%)
Query: 87 GKLGRLKFISFSFNKLSGSIPTW--IGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQ 144
+ L+ + SFN +P G L+KL + L + +L +L
Sbjct: 118 CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL 176
Query: 145 ASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL--- 201
+ + + N L L + ++ L L L L+
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236
Query: 202 ----IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSL--PNIEYLTLAINNLIGTIPD-- 253
+ T+ + L + + + + +EYL + + I
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296
Query: 254 ---SLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSS 310
S T L+ + + F + +N+ + ++
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS----- 351
Query: 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLT 370
++L N + LQ+ L + K + + L
Sbjct: 352 ---PSSFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLK-NFFKVALMTKNMSSLE 406
Query: 371 LDFNDLN----GTIPTSVGTLQQLQGLSLEDNNLEG----SIPYDLCHLELNGNKLSGHI 422
LN + + + L+L N L G +P + L+L+ N++ I
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SI 465
Query: 423 PPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSN 464
P + L +L+EL + SN+L S L + I L N
Sbjct: 466 PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 1e-14
Identities = 62/406 (15%), Positives = 122/406 (30%), Gaps = 50/406 (12%)
Query: 162 SNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQ 221
+D + NL +P ++ ++L+L N++S L P I +S +RVL L N+
Sbjct: 31 ELESMVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR 87
Query: 222 FSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSF-SGHIPNTFG 280
L + ++EYL ++ N L + + L LDL N F + FG
Sbjct: 88 IR-SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMAS---LRHLDLSFNDFDVLPVCKEFG 143
Query: 281 NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSA 340
NL L L + + L L + +
Sbjct: 144 NLTKLTFLGLSAAKFR--QLDLLPVAHLHLSCILLDLVSYHIKGGETESL---------- 191
Query: 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNL 400
+ +L L F+ + ++ L L L + L
Sbjct: 192 ---------------------QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230
Query: 401 EGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPS-SLWSLEY--IL 457
L + + +L+ + +EY I
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLN------VTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284
Query: 458 EINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGP 517
+ ++ + + LK L + + + + ++ L+ +
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344
Query: 518 IPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
S S L+ + N F+ + + L L+ + +N L+
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 7e-09
Identities = 38/296 (12%), Positives = 84/296 (28%), Gaps = 49/296 (16%)
Query: 68 LMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVL-----SKLQIMSLR 122
L ++ + N + ++ + + + + + ++ +++
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284
Query: 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGN----IPSGIGN-LSNLFDLDLRHNNLQDQ 177
N IT I F S+ + + + + + + L ++
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344
Query: 178 IPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHS---- 233
+ + L N + + + ++ L L N +
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMS 403
Query: 234 -----------------------LPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270
+I L L+ N L G++ L K+ LDL +N
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR 461
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNP 326
IP +L+ L L++ +N L + L Y+ L NP
Sbjct: 462 IM-SIPKDVTHLQALQELNVASNQLKSVPDGV--------FDRLTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 38/215 (17%), Positives = 81/215 (37%), Gaps = 10/215 (4%)
Query: 13 SHLAIMLLYLLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLD 72
S A+ L + N + + S + LS + S L+
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359
Query: 73 VTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNIT----G 128
T N F + L RL+ + N L + + + + + ++
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSH 418
Query: 129 PIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNL 188
+ + +L S N++ G++ + + LDL +N + IP ++ +LQ L
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQAL 475
Query: 189 ESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQF 222
+ L + +N L +P +F +++++ + LH N +
Sbjct: 476 QELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPW 509
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-25
Identities = 53/246 (21%), Positives = 91/246 (36%), Gaps = 16/246 (6%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVID-GNIPSGI-GNLS 162
S+PT G+ S + L +N + L++L L S N + S +
Sbjct: 21 SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 163 NLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQ 221
+L LDL N + + + L+ LE L +NL + ++F ++ + L++
Sbjct: 79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 222 FSGRLPSTIGHSLPNIEYLTLAINNLIGTI-PDSLTNASKLIGLDLGSNSFSGHIPNTFG 280
+ I + L ++E L +A N+ PD T L LDL P F
Sbjct: 138 TR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 281 NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSA 340
+L L VL++ NN + + L L N + + +F +
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFP--------YKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248
Query: 341 SLQSFY 346
SL
Sbjct: 249 SLAFLN 254
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-24
Identities = 53/240 (22%), Positives = 93/240 (38%), Gaps = 13/240 (5%)
Query: 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNIT--GPIPNSLFNLSKLEMLQASFNV 149
+ NKL L++L +SL +N ++ G S F + L+ L SFN
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 150 IDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIFN 208
+ + S L L LD +H+NL+ + +L+NL L + +
Sbjct: 90 V-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 209 ISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP-DSLTNASKLIGLDLG 267
+S++ VL + N F I L N+ +L L+ + + + + S L L++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS-QCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 268 SNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327
N+F + L L VL N++ T ++ L++L L N
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE----LQHFPSS---LAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 6e-20
Identities = 56/295 (18%), Positives = 93/295 (31%), Gaps = 65/295 (22%)
Query: 251 IPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSS 310
IP S T L+L SN F L L LS+ +N L+ + + +S
Sbjct: 26 IPSSATR------LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79
Query: 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLT 370
L YL L N + ++ L L L
Sbjct: 80 LK------YLDLSFNGVI--------------------------TMSSNFLGLEQLEHLD 107
Query: 371 LDFNDLNGTIPTSV-GTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPP-CLAS 428
++L SV +L+ L L + +
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-------------------VAFNGIFNG 148
Query: 429 LTSLRELRLGSNKLTSSIPSSLWS-LEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLS 486
L+SL L++ N + +++ L + ++LS L + L L L+VL++S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMS 207
Query: 487 RNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV--GSLISLESLDLSGNNFS 539
N L L+ L + N + SL L+L+ N+F+
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 5e-19
Identities = 53/220 (24%), Positives = 83/220 (37%), Gaps = 15/220 (6%)
Query: 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLE-GSIPYD------ 407
S+P I L L+ N L L QL LSL N L
Sbjct: 21 SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 408 -LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSL-WSLEYILEINLSSNS 465
L +L+L+ N + + L L L + L S+ SL ++ +++S
Sbjct: 79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 466 LNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTI-GALVDLETLSLASNQFQGPIPESVG 523
+ + L L VL ++ N N I L +L L L+ Q + P +
Sbjct: 138 TR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 524 SLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
SL SL+ L++S NNF + L+ L+ + S N +
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 58/305 (19%), Positives = 95/305 (31%), Gaps = 59/305 (19%)
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGR- 225
+ L +PT I + L L +N L L ++ + L+L SN S +
Sbjct: 12 IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 226 LPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIP-NTFGNLRH 284
S +++YL L+ N + T+ + +L LD ++ + F +LR+
Sbjct: 69 CCSQSDFGTTSLKYLDLS-FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127
Query: 285 LNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQS 344
L L I + + L L + N P F+
Sbjct: 128 LIYLDISHTHTRVAFNGI--------FNGLSSLEVLKMAGNSFQENFLP--DIFT----- 172
Query: 345 FYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSV-GTLQQLQGLSLEDNNLEGS 403
LR L L L L + + +L LQ L++ NN S
Sbjct: 173 -----------------ELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-S 213
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILE-INLS 462
+ L SL+ L N + +S L L +NL+
Sbjct: 214 LDTFP-----------------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256
Query: 463 SNSLN 467
N
Sbjct: 257 QNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 7e-15
Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 5/192 (2%)
Query: 59 PPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPT-WIGVLSKLQ 117
+ L LD++ N + + L +L+ + F + L L L
Sbjct: 71 SQSDFGTTSLKYLDLS-FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129
Query: 118 IMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSNLFDLDLRHNNLQD 176
+ + + + LS LE+L+ + N N I L NL LDL L+
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE- 188
Query: 177 QIPTEI-GNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLP 235
Q+ +L +L+ L + NN L +++++VL+ N + H
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248
Query: 236 NIEYLTLAINNL 247
++ +L L N+
Sbjct: 249 SLAFLNLTQNDF 260
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 67/338 (19%), Positives = 117/338 (34%), Gaps = 56/338 (16%)
Query: 213 RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFS 272
RV+ ++P + P+ L L N + N L L L +N S
Sbjct: 34 RVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 273 GHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILP 332
P F L L L + N L +L L + N + +
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLKELPEKM-----PKTLQ------ELRVHENEITKVRK 138
Query: 333 PLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDL-NGTIPTSV-GTLQQL 390
F+ L +I++ L N L + I +++L
Sbjct: 139 ---SVFN----------------------GLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 391 QGLSLEDNNLEG---SIPYDLCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSI 446
+ + D N+ +P L L L+GNK++ + L L +L +L L N +++
Sbjct: 174 SYIRIADTNITTIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVD 232
Query: 447 PSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSG------NIPSTIGA 500
SL + ++ E++L++N L +P + K ++V+ L N +S P
Sbjct: 233 NGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291
Query: 501 LVDLETLSLASNQFQ-GPIPESV-GSLISLESLDLSGN 536
+SL SN Q I S + ++ L
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 6e-23
Identities = 61/342 (17%), Positives = 119/342 (34%), Gaps = 61/342 (17%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSN 163
+P + ++ L+NN IT NL L L N I I G L
Sbjct: 45 KVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVK 101
Query: 164 LFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQF 222
L L L N L+ ++P ++ + L+ L + N ++ + ++F ++ + V+ L +N
Sbjct: 102 LERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPL 157
Query: 223 -SGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281
S + + + + Y+ +A + I TIP L L L L N + +
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIA-DTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKG 214
Query: 282 LRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSAS 341
L +L L + N+++ + + L N L L L++N L
Sbjct: 215 LNNLAKLGLSFNSISAVDNGS--------LANTPHLRELHLNNNKL-------------- 252
Query: 342 LQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLE 401
+P + + + + ++ L N+++ +
Sbjct: 253 ------------VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA------- 293
Query: 402 GSIPYDLCHLELNGNKLSGH-IPPCL-ASLTSLRELRLGSNK 441
+ L N + I P + ++LG+ K
Sbjct: 294 -----SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-21
Identities = 53/292 (18%), Positives = 110/292 (37%), Gaps = 26/292 (8%)
Query: 44 VKALNLSGMGLGGTIPPH-LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKL 102
L+L + I NL L +L + N P L +L+ + S N+L
Sbjct: 54 TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 103 SGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLF-NLSKLEMLQASFNVI-DGNIPSGI-G 159
+P + LQ + + N IT + S+F L+++ +++ N + I +G
Sbjct: 113 K-ELPE--KMPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 160 NLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHS 219
+ L + + N+ IP G +L L L N ++ + ++ ++ + L L
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 220 NQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSG------ 273
N S + + + P++ L L NN + +P L + + + L +N+ S
Sbjct: 226 NSIS-AVDNGSLANTPHLRELHLN-NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Query: 274 HIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSN 325
P + +S+ +N + + + + + L +
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV------YVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 3e-21
Identities = 66/346 (19%), Positives = 119/346 (34%), Gaps = 73/346 (21%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIR 213
+P + + LDL++N + + + NL+NL +L L N +S + P A + +
Sbjct: 46 VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP-DSLTNASKLIGLDLGSNSF- 271
L L NQ LP ++ L + N I + +++I ++LG+N
Sbjct: 104 RLYLSKNQLK-ELPE---KMPKTLQELRVH-ENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 272 SGHIP-NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
S I F ++ L+ + I N+TT SLT L LD N + +
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL-----PPSLT------ELHLDGNKITKV 207
Query: 331 LPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390
+ L L L L FN ++ S+ L
Sbjct: 208 DA---ASLK----------------------GLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Query: 391 QGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS------ 444
+ L L +N L +P LA ++ + L +N +++
Sbjct: 243 RELHLNNNKLV-------------------KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Query: 445 SIPSSLWSLEYILEINLSSNSLN-DSLPSNV-QKLKVLRVLDLSRN 488
P ++L SN + + + + + V + L
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 2e-19
Identities = 52/259 (20%), Positives = 99/259 (38%), Gaps = 30/259 (11%)
Query: 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFN--- 148
+ NK++ L L + L NN I+ P + L KLE L S N
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 149 VIDGNIPSGI------------------GNLSNLFDLDLRHNNLQD-QIPTEI-GNLQNL 188
+ +P + L+ + ++L N L+ I ++ L
Sbjct: 114 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 189 ESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLI 248
+ + N++ IP + ++ L+L N+ + ++ + L N+ L L+ N++
Sbjct: 174 SYIRIADTNITT-IPQGLP--PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS 229
Query: 249 GTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFL 308
SL N L L L +N +P + +++ V+ + NN++ S+ +
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND--FCPP 286
Query: 309 SSLTNCRKLSYLVLDSNPL 327
T S + L SNP+
Sbjct: 287 GYNTKKASYSGVSLFSNPV 305
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 4e-18
Identities = 43/218 (19%), Positives = 77/218 (35%), Gaps = 25/218 (11%)
Query: 362 NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD-------LCHLELN 414
L L L L N L +P + LQ L + +N + + + +EL
Sbjct: 98 PLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELG 153
Query: 415 GNKL-SGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPS 472
N L S I + L +R+ +T+ SL E++L N + + +
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKIT-KVDA 209
Query: 473 NV-QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESL 531
+ L L L LS N +S ++ L L L +N+ +P + ++ +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVV 268
Query: 532 DLSGNNFSG------KIPKSLEALSHLKQFNVSQNMLE 563
L NN S P + ++ N ++
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 480 LRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539
LRV+ S L +P + D L L +N+ +L +L +L L N S
Sbjct: 33 LRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 540 GKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
P + L L++ +S+N L+ E+P + K
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLK-ELP-EKMPKT 122
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 61/332 (18%), Positives = 109/332 (32%), Gaps = 67/332 (20%)
Query: 240 LTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTES 299
+ L INN +S N D + + + N +
Sbjct: 3 IMLPINNNFSLSQNSFYNTISGTYADY---------FSAWDKWEKQALPGENRNEAVSLL 53
Query: 300 SSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKE 359
+ S L L+ L LP + + + L S+P+
Sbjct: 54 KEC----------LINQFSELQLNRLNLS-SLPDNLPP---QITVLEITQNALI-SLPEL 98
Query: 360 IGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLS 419
+L L N L+ T+P +L+ HL+++ N+L+
Sbjct: 99 PASLEYLDAC---DNRLS-TLPELPASLK---------------------HLDVDNNQLT 133
Query: 420 GHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKV 479
+P L + +N+LT +P SLE +++ +N L LP + L
Sbjct: 134 -MLPE---LPALLEYINADNNQLTM-LPELPTSLE---VLSVRNNQLT-FLPELPESL-- 182
Query: 480 LRVLDLSRNQLSGNIPSTIGALVDLET----LSLASNQFQGPIPESVGSLISLESLDLSG 535
LD+S N L ++P+ E N+ IPE++ SL ++ L
Sbjct: 183 -EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILED 239
Query: 536 NNFSGKIPKSLEALSHLKQFNVSQNMLEGEIP 567
N S +I +SL + ++ +
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 90.8 bits (225), Expect = 2e-19
Identities = 61/438 (13%), Positives = 137/438 (31%), Gaps = 71/438 (16%)
Query: 100 NKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIG 159
+ + K + N + L +++ LQ + + ++P +
Sbjct: 23 SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLP 79
Query: 160 NLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHS 219
+ L++ N L +P +L+ L+ N LS L P ++ + L++ +
Sbjct: 80 --PQITVLEITQNALI-SLPELPASLEYLD---ACDNRLSTL-PELPASL---KHLDVDN 129
Query: 220 NQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTF 279
NQ + LP +EY+ NN + +P+ T+ L L + +N + +P
Sbjct: 130 NQLT-MLPELPA----LLEYINAD-NNQLTMLPELPTS---LEVLSVRNNQLT-FLPELP 179
Query: 280 GNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFS 339
+L L+V TN L + + + + N +
Sbjct: 180 ESLEALDV---STNLLESLPAVPVRNHHSEET-----EIFFRCRENRIT----------- 220
Query: 340 ASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNN 399
IP+ I +L + L+ N L+ I S+
Sbjct: 221 ---------------HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265
Query: 400 LEGSIPYDLCHLELNGNK----LSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEY 455
S + + ++ + E +N ++ + ++
Sbjct: 266 FSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSA 325
Query: 456 ILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIG-----ALVDLETLSLA 510
+++ + + + ++KL L ++ + + +L L
Sbjct: 326 -----RNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLV 380
Query: 511 SNQFQGPIPESVGSLISL 528
+G G+L+SL
Sbjct: 381 HQASEGLFDNDTGALLSL 398
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 9e-17
Identities = 51/297 (17%), Positives = 95/297 (31%), Gaps = 49/297 (16%)
Query: 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK 101
++ L ++ L ++P +L LD N LP L L N+
Sbjct: 80 PQITVLEITQNALI-SLPELPASLE---YLDACDNRL-STLPELPASLKHLD---VDNNQ 131
Query: 102 LSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNL-----------------SKLEMLQ 144
L+ +P +L + + NN +T +P +L LE L
Sbjct: 132 LT-MLPELPALLEYI---NADNNQLTM-LPELPTSLEVLSVRNNQLTFLPELPESLEALD 186
Query: 145 ASFNVIDGNIPSGIGNLSNL----FDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSG 200
S N+++ ++P+ + R N + IP I +L ++ L N LS
Sbjct: 187 VSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244
Query: 201 LIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASK 260
I ++ + + FS P + +T ++
Sbjct: 245 RIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT---AWFPENKQSDVSQIWH 301
Query: 261 LIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKL 317
+ +N+FS L+ LS + T ++L L+ +L
Sbjct: 302 AFEHEEHANTFS----------AFLDRLSDTVSARNTSGFREQVAAWLEKLSASAEL 348
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 4e-23
Identities = 56/226 (24%), Positives = 85/226 (37%), Gaps = 16/226 (7%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSN 163
++P G+ + Q + L N I+ S L +L NV+ I + L+
Sbjct: 25 AVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLAL 81
Query: 164 LFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQ 221
L LDL N + L L +L L L + P +F ++ ++ L L N
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140
Query: 222 FSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281
LP L N+ +L L N + + L L L N + P+ F +
Sbjct: 141 LQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 282 LRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327
L L L + NNL+ + A L R L YL L+ NP
Sbjct: 200 LGRLMTLYLFANNLSALPTEA--------LAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 5e-20
Identities = 51/215 (23%), Positives = 77/215 (35%), Gaps = 13/215 (6%)
Query: 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD------- 407
++P I + L N ++ S + L L L N L I
Sbjct: 25 AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81
Query: 408 LCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSL 466
L L+L+ N + P L L L L L P L + + L N+L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 467 NDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL 525
+LP + + L L L L N++S L L+ L L N+ P + L
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 526 ISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQN 560
L +L L NN S ++L L L+ ++ N
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 48/238 (20%), Positives = 85/238 (35%), Gaps = 9/238 (3%)
Query: 37 CDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFIS 96
C ++ + GL +P + + + + N L +
Sbjct: 6 CVCYNEPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILW 62
Query: 97 FSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLF-NLSKLEMLQASFNVIDGNIP 155
N L+ L+ L+ + L +N + + F L +L L + +
Sbjct: 63 LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELG 121
Query: 156 SGI-GNLSNLFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIFNISTIR 213
G+ L+ L L L+ N LQ +P + +L NL L L N +S + A + ++
Sbjct: 122 PGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180
Query: 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSF 271
L LH N+ + + L + L L NNL ++L L L L N +
Sbjct: 181 RLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 3e-18
Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 11/211 (5%)
Query: 337 NFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLE 396
A+ Q + + ++ R L +L L N L + L L+ L L
Sbjct: 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88
Query: 397 DNNLEGSIPYD-------LCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPS 448
DN S+ L L L+ L + P L +L+ L L N L +
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 449 SLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETL 507
+ L + + L N + S+P + L L L L +N+++ P L L TL
Sbjct: 148 TFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206
Query: 508 SLASNQFQGPIPESVGSLISLESLDLSGNNF 538
L +N E++ L +L+ L L+ N +
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 3e-17
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 5/162 (3%)
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463
IP + L+GN++S + +L L L SN L ++ L + +++LS
Sbjct: 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89
Query: 464 NSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTI-GALVDLETLSLASNQFQGPIPES 521
N+ S+ L L L L R L + + L L+ L L N Q +P+
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDD 147
Query: 522 V-GSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNML 562
L +L L L GN S ++ L L + + QN +
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 1e-16
Identities = 43/185 (23%), Positives = 66/185 (35%), Gaps = 15/185 (8%)
Query: 390 LQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNK 441
Q + L N + +P L L L+ N L+ I L L +L L N
Sbjct: 34 SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91
Query: 442 LTSSIPSSLWS-LEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTI- 498
S+ + + L + ++L L L + + L L+ L L N L +P
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149
Query: 499 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVS 558
L +L L L N+ + L SL+ L L N + P + L L +
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 559 QNMLE 563
N L
Sbjct: 210 ANNLS 214
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-16
Identities = 52/250 (20%), Positives = 87/250 (34%), Gaps = 41/250 (16%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIR 213
+P GI + + L N + +NL L L +N L+ + A ++ +
Sbjct: 26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Query: 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP-DSLTNASKLIGLDLGSNSFS 272
L+L N + H L + L L + + + L L L N+
Sbjct: 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 273 GHIP-NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGIL 331
+P +TF +L +L L + N +++ A L L+L N + +
Sbjct: 143 -ALPDDTFRDLGNLTHLFLHGNRISSVPERA--------FRGLHSLDRLLLHQNRVAHVH 193
Query: 332 PPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSV-GTLQQL 390
P F +L L+ L L N+L+ +PT L+ L
Sbjct: 194 P---HAFR----------------------DLGRLMTLYLFANNLS-ALPTEALAPLRAL 227
Query: 391 QGLSLEDNNL 400
Q L L DN
Sbjct: 228 QYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 2e-15
Identities = 49/214 (22%), Positives = 78/214 (36%), Gaps = 22/214 (10%)
Query: 264 LDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLD 323
+ L N S +F R+L +L + +N L ++A T L L L
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA--------FTGLALLEQLDLS 88
Query: 324 SNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEI-GNLRGLILLTLDFNDLNGTIPT 382
N + P + L + + C L + + L L L L N L +P
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPD 146
Query: 383 SV-GTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGHIPP-CLASLTSLR 433
L L L L N + S+P L L L+ N+++ H+ P L L
Sbjct: 147 DTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLM 204
Query: 434 ELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467
L L +N L++ +L L + + L+ N
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-22
Identities = 69/338 (20%), Positives = 112/338 (33%), Gaps = 57/338 (16%)
Query: 213 RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFS 272
RV+ +P I P+ L L N++ D L L L +N S
Sbjct: 36 RVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 273 GHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILP 332
F LR L L I N+L + SSL L + N + +
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNL-----PSSLV------ELRIHDNRIRKVPK 140
Query: 333 PLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDL-NGTIPTSVGTLQQLQ 391
G FS LR + + + N L N +L
Sbjct: 141 ---GVFS----------------------GLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175
Query: 392 GLSLEDNNLEG---SIPYDLCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIP 447
L + + L G +P L L L+ NK+ I L + L L LG N++
Sbjct: 176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 448 SSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTI-------GA 500
SL L + E++L +N L +P+ + LK+L+V+ L N ++ +
Sbjct: 235 GSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVK 292
Query: 501 LVDLETLSLASNQFQ-GPIPESV-GSLISLESLDLSGN 536
+SL +N + + + ++
Sbjct: 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 1e-19
Identities = 52/340 (15%), Positives = 101/340 (29%), Gaps = 58/340 (17%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSN 163
++P + ++ L+NN+I+ + L L L N I I L
Sbjct: 47 AVPK--EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRK 103
Query: 164 LFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFS 223
L L + N+L +IP + +L L + N + + + + + + N
Sbjct: 104 LQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160
Query: 224 GRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLR 283
+ YL ++ + IP L L L L N
Sbjct: 161 NSGFEPGAFDGLKLNYLRIS-EAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYS 217
Query: 284 HLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQ 343
L L + N + + + L+ L L LD+N L
Sbjct: 218 KLYRLGLGHNQIRMIENGS--------LSFLPTLRELHLDNNKL---------------- 253
Query: 344 SFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGS 403
+P + +L+ L ++ L N++ + + +
Sbjct: 254 ----------SRVPAGLPDLKLLQVVYLHTNNIT-KVGVND-----FCPVGFGVKRA--- 294
Query: 404 IPYDLCHLELNGNKLS-GHIPPCL-ASLTSLRELRLGSNK 441
+ L N + + P +T ++ G+ K
Sbjct: 295 ---YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 3e-18
Identities = 69/370 (18%), Positives = 123/370 (33%), Gaps = 96/370 (25%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIR 213
+P I + LDL++N++ + + LQ+L +L L N +S + A + ++
Sbjct: 48 VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSG 273
L + N +P + ++ L + +N I +P
Sbjct: 106 KLYISKNHLV-EIPP---NLPSSLVELRIH-DNRIRKVP--------------------- 139
Query: 274 HIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPP 333
F LR++N + + N L + L KL+YL + L GI
Sbjct: 140 --KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-------KLNYLRISEAKLTGIPK- 189
Query: 334 LIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGL 393
L L LD N + I L + L
Sbjct: 190 ---------------------------DLPETLNELHLDHNKIQ-AIEL--EDLLRYSKL 219
Query: 394 SLEDNNLEGSIPYDLCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWS 452
L L N++ I L+ L +LREL L +NKL+ +P+ L
Sbjct: 220 Y---------------RLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262
Query: 453 LEYILEINLSSNSLNDSLPSNV-------QKLKVLRVLDLSRNQLSGNI--PSTIGALVD 503
L+ + + L +N++ + N K + L N + P+T + D
Sbjct: 263 LKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321
Query: 504 LETLSLASNQ 513
+ + +
Sbjct: 322 RLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 47/229 (20%), Positives = 81/229 (35%), Gaps = 26/229 (11%)
Query: 362 NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD-------LCHLELN 414
LR L L + N L IP L L + DN + +P + +E+
Sbjct: 100 PLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMG 155
Query: 415 GNKL-SGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSN 473
GN L + P L LR+ KLT +L E++L N + ++
Sbjct: 156 GNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN---ELHLDHNKIQ-AIELE 211
Query: 474 V-QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLD 532
+ L L L NQ+ ++ L L L L +N+ +P + L L+ +
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVY 270
Query: 533 LSGNNFSGKIP-------KSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
L NN + K+ ++ ++ N + +F+
Sbjct: 271 LHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 14/148 (9%)
Query: 431 SLRELRLGSNKLTS---SIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLS 486
LR ++ L + I L +L +N ++ L + + L+ L L L
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPDTTLL------DLQNNDIS-ELRKDDFKGLQHLYALVLV 86
Query: 487 RNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSL 546
N++S L L+ L ++ N IP SL L + N
Sbjct: 87 NNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPP--NLPSSLVELRIHDNRIRKVPKGVF 143
Query: 547 EALSHLKQFNVSQNMLEGEIPVKGSFKN 574
L ++ + N LE G+F
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDG 171
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 2e-21
Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 16/240 (6%)
Query: 91 RLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVI 150
+ ++ N++ L L+I+ L N+I + L+ L L+ N +
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 151 DGNIPSGI-GNLSNLFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIF- 207
IP+G LS L +L LR+N ++ IP+ + +L L LG I F
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Query: 208 NISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLG 267
+S +R LNL +P+ L ++ L L+ N+L P S L L +
Sbjct: 183 GLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 268 SNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327
+ N F NL+ L +++ NNLT + L + L + L NP
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL-----FTPLHH---LERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 2e-20
Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 15/218 (6%)
Query: 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD------- 407
+P I LL L N + S L+ L+ L L N++ +I
Sbjct: 57 EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLAN 113
Query: 408 LCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSL 466
L LEL N+L+ IP L+ L+EL L +N + S + + + ++L
Sbjct: 114 LNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172
Query: 467 NDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL 525
+ + L LR L+L+ L IP + L+ L+ L L+ N P S L
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Query: 526 ISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
+ L+ L + + + + L L + N++ N L
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 3e-19
Identities = 60/261 (22%), Positives = 92/261 (35%), Gaps = 46/261 (17%)
Query: 264 LDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLD 323
L+L N N+F +LRHL +L + N++ T A L+ L L
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA--------FNGLANLNTLELF 120
Query: 324 SNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTS 383
N L I G F L L L L N + +IP+
Sbjct: 121 DNRLTTIPN---GAFV----------------------YLSKLKELWLRNNPIE-SIPSY 154
Query: 384 V-GTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGHIPPCLASLTSLREL 435
+ L+ L L + I L +L L L IP L L L EL
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDEL 212
Query: 436 RLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNI 494
L N L++ P S L ++ ++ + + + + N L+ L ++L+ N L+
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLP 271
Query: 495 PSTIGALVDLETLSLASNQFQ 515
L LE + L N +
Sbjct: 272 HDLFTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 3e-19
Identities = 66/290 (22%), Positives = 95/290 (32%), Gaps = 50/290 (17%)
Query: 187 NLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINN 246
+ NL +P I + R+LNLH NQ + L ++E L L+ N
Sbjct: 44 QFSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLS-RN 98
Query: 247 LIGTIPD-SLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQW 305
I TI + + L L+L N + F L L L +R N + + S A
Sbjct: 99 HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA--- 155
Query: 306 SFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRG 365
L L L + G F L
Sbjct: 156 -----FNRIPSLRRLDLGELKRLSYISE--GAFE----------------------GLSN 186
Query: 366 LILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKL 418
L L L +L IP L +L L L N+L +I L L + +++
Sbjct: 187 LRYLNLAMCNLR-EIPNLTP-LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQI 243
Query: 419 SGHIPPC-LASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467
I +L SL E+ L N LT L ++ I+L N N
Sbjct: 244 Q-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 9e-18
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 13/210 (6%)
Query: 362 NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD-------LCHLELN 414
+LR L +L L N + + L L L L DN L +IP L L L
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLR 144
Query: 415 GNKLSGHIPP-CLASLTSLRELRLGS-NKLTSSIPSSLWSLEYILEINLSSNSLNDSLPS 472
N + IP + SLR L LG +L+ + L + +NL+ +L +P+
Sbjct: 145 NNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN 202
Query: 473 NVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLD 532
+ L L LDLS N LS P + L+ L+ L + +Q Q + +L SL ++
Sbjct: 203 -LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261
Query: 533 LSGNNFSGKIPKSLEALSHLKQFNVSQNML 562
L+ NN + L HL++ ++ N
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-15
Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 10/191 (5%)
Query: 389 QLQGLSLEDNNLE---GSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS 445
Q + NL I + L L+ N++ L L L+L N + +
Sbjct: 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103
Query: 446 IPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGALVDL 504
+ L + + L N L ++P+ L L+ L L N + + L
Sbjct: 104 EIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162
Query: 505 ETLSLAS-NQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
L L + + L +L L+L+ N +IP +L L L + ++S N L
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220
Query: 564 GEIPVKGSFKN 574
I GSF+
Sbjct: 221 -AIR-PGSFQG 229
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 6e-21
Identities = 63/266 (23%), Positives = 107/266 (40%), Gaps = 20/266 (7%)
Query: 36 SCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFI 95
SC ++ +V + GL +P + S L++ NN + L L+ +
Sbjct: 51 SCSNQFSKV---VCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVL 104
Query: 96 SFSFNKLSGSIPTWIGV---LSKLQIMSLRNNNITGPIPNSLF-NLSKLEMLQASFNVID 151
N + I G L+ L + L +N +T IP+ F LSKL L N I
Sbjct: 105 QLGRNSIR-QIEV--GAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPI- 159
Query: 152 GNIPSGI-GNLSNLFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIFNI 209
+IPS + +L LDL + I L NL+ L LG N+ + P + +
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPL 217
Query: 210 STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSN 269
+ L + N F + H L +++ L + + + ++ + L+ L+L N
Sbjct: 218 VGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276
Query: 270 SFSGHIPNTFGNLRHLNVLSIRTNNL 295
+ S + F LR+L L + N
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 4e-20
Identities = 52/218 (23%), Positives = 90/218 (41%), Gaps = 15/218 (6%)
Query: 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD------- 407
+P+ I L L N++ + L L+ L L N++ I
Sbjct: 68 EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124
Query: 408 LCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSL 466
L LEL N L+ IP L+ LREL L +N + S + + ++ ++L
Sbjct: 125 LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183
Query: 467 NDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL 525
+ + + L L+ L+L + ++P + LV LE L ++ N F P S L
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL 241
Query: 526 ISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
SL+ L + + S + + L+ L + N++ N L
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 3e-19
Identities = 71/289 (24%), Positives = 106/289 (36%), Gaps = 59/289 (20%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIR 213
+P GI SN L+L NN+Q +L +LE L LG N++ + A ++++
Sbjct: 69 VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN 126
Query: 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP-DSLTNASKLIGLDLGSNSFS 272
L L N + +PS L + L L NN I +IP + L+ LDLG
Sbjct: 127 TLELFDNWLT-VIPSGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRLDLGELKKL 184
Query: 273 GHIP-NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGIL 331
+I F L +L L++ N+ + +LT L L + N I
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIKD----------MPNLTPLVGLEELEMSGNHFPEIR 234
Query: 332 PPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQ 391
P G+F L L L + + ++ + L L
Sbjct: 235 P---GSFH----------------------GLSSLKKLWVMNSQVSLIERNAFDGLASLV 269
Query: 392 GLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSN 440
L+L NNL S+P+DL L L EL L N
Sbjct: 270 ELNLAHNNLS-SLPHDL-----------------FTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 3e-19
Identities = 57/261 (21%), Positives = 85/261 (32%), Gaps = 46/261 (17%)
Query: 264 LDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLD 323
L+L N+ +TF +L HL VL + N++ A L+ L L
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--------FNGLASLNTLELF 131
Query: 324 SNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTS 383
N L I G F L L L L N + +IP+
Sbjct: 132 DNWLTVIPS---GAFE----------------------YLSKLRELWLRNNPIE-SIPSY 165
Query: 384 V-GTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGHIPPCLASLTSLREL 435
+ L L L + I L +L L + +P L L L EL
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEEL 223
Query: 436 RLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNI 494
+ N P S L + ++ + ++ + + N L L L+L+ N LS
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSLP 282
Query: 495 PSTIGALVDLETLSLASNQFQ 515
L L L L N +
Sbjct: 283 HDLFTPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 5e-19
Identities = 62/290 (21%), Positives = 92/290 (31%), Gaps = 50/290 (17%)
Query: 187 NLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINN 246
+ LS +P I S R LNL N + + L ++E L L N
Sbjct: 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLG-RN 109
Query: 247 LIGTIPD-SLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQW 305
I I + + L L+L N + F L L L +R N + + S A
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA--- 166
Query: 306 SFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRG 365
L L L + +F L
Sbjct: 167 -----FNRVPSLMRLDLGELKKLEYISE---------GAF---------------EGLFN 197
Query: 366 LILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKL 418
L L L ++ +P L L+ L + N+ I L L + +++
Sbjct: 198 LKYLNLGMCNIK-DMPNLTP-LVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQV 254
Query: 419 SGHIPPC-LASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467
S I L SL EL L N L+S L Y++E++L N N
Sbjct: 255 S-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 3e-18
Identities = 53/211 (25%), Positives = 80/211 (37%), Gaps = 15/211 (7%)
Query: 362 NLRGLILLTLDFNDLNGTIPTSV-GTLQQLQGLSLEDNNLEGSIPYD-------LCHLEL 413
+L L +L L N + I L L L L DN L IP L L L
Sbjct: 97 HLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWL 154
Query: 414 NGNKLSGHIPP-CLASLTSLRELRLGS-NKLTSSIPSSLWSLEYILEINLSSNSLNDSLP 471
N + IP + SL L LG KL + L + +NL ++ +P
Sbjct: 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP 212
Query: 472 SNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESL 531
+ + L L L++S N P + L L+ L + ++Q + L SL L
Sbjct: 213 N-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271
Query: 532 DLSGNNFSGKIPKSLEALSHLKQFNVSQNML 562
+L+ NN S L +L + ++ N
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 7e-16
Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 12/192 (6%)
Query: 389 QLQGLSLEDNNLE---GSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS 445
Q + L IP + +L L N + L L L+LG N +
Sbjct: 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114
Query: 446 IPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTI-GALVD 503
+ L + + L N L +PS + L LR L L N + +IPS +
Sbjct: 115 EVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPS 172
Query: 504 LETLSLAS-NQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNML 562
L L L + + + L +L+ L+L N +P +L L L++ +S N
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHF 230
Query: 563 EGEIPVKGSFKN 574
EI GSF
Sbjct: 231 P-EIR-PGSFHG 240
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 5/133 (3%)
Query: 45 KALNLSGMGLGGTIPPH-LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS 103
L+L + I L L L++ + N +P L L L+ + S N
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP 231
Query: 104 GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLS 162
P LS L+ + + N+ ++ N+ L+ L L + N + ++P + L
Sbjct: 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLR 290
Query: 163 NLFDLDLRHNNLQ 175
L +L L HN
Sbjct: 291 YLVELHLHHNPWN 303
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 4e-19
Identities = 82/434 (18%), Positives = 141/434 (32%), Gaps = 56/434 (12%)
Query: 114 SKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNN 173
+ S L+ L L + I +GI L+ L L NN
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNN 75
Query: 174 LQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHS 233
+ ++ NL LA +N L+ L + ++ + LN +N+ +
Sbjct: 76 ITT---LDLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLT----KLDVSQ 125
Query: 234 LPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTN 293
P + YL A N + I +++ ++L LD N + L L N
Sbjct: 126 NPLLTYLNCA-RNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN 180
Query: 294 NLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLG 353
+T ++ + L+ L D+N + + L N L KL
Sbjct: 181 KITE-----------LDVSQNKLLNRLNCDTNNITKL--DLNQN--IQLTFLDCSSNKL- 224
Query: 354 GSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG---SIPYDLCH 410
I + L L N L + S TL +L L +L + L +
Sbjct: 225 TEID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLEIDLTHNTQLIY 279
Query: 411 LELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSL 470
+ G + + + T L L + +T S L Y + L++ L L
Sbjct: 280 FQAEGCRKIKELD--VTHNTQLYLLDCQAAGITELDLSQNPKLVY---LYLNNTELT-EL 333
Query: 471 PSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL----- 525
V L+ L + S++G + L A Q E++ +
Sbjct: 334 D--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIA 389
Query: 526 ISLESLDLSGNNFS 539
+S + LD GN +
Sbjct: 390 VSPDLLDQFGNPMN 403
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 63/381 (16%), Positives = 121/381 (31%), Gaps = 49/381 (12%)
Query: 186 QNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAIN 245
N S + + ++T+ L+ H++ + + I L + L +
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEK-LTGLTKLICT-S 73
Query: 246 NLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQW 305
N I T+ L+ + L L SN + ++ L L L+ TN LT
Sbjct: 74 NNITTLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTK-------- 120
Query: 306 SFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRG 365
++ L+YL N L + + + L + K ++
Sbjct: 121 ---LDVSQNPLLTYLNCARNTL----TEIDVSHNTQLTELDCHLNKK--ITKLDVTPQTQ 171
Query: 366 LILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG---SIPYDLCHLELNGNKLSGHI 422
L L FN + V + L L+ + NN+ + L L+ + NKL+ I
Sbjct: 172 LTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT-EI 227
Query: 423 PPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRV 482
+ LT L N LT S+L L ++ L + ++ L
Sbjct: 228 D--VTPLTQLTYFDCSVNPLTELDVSTLSKLT---TLHCIQTDLLE---IDLTHNTQLIY 279
Query: 483 LDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKI 542
+ + + L L + + L L L+ + ++
Sbjct: 280 FQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-EL 333
Query: 543 PKSLEALSHLKQFNVSQNMLE 563
+ + LK + ++
Sbjct: 334 D--VSHNTKLKSLSCVNAHIQ 352
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 68/453 (15%), Positives = 150/453 (33%), Gaps = 71/453 (15%)
Query: 39 SRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFS 98
+ + +L+ + T + L+ L L T NN L L + L +++
Sbjct: 39 EQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNI-TTLD--LSQNTNLTYLACD 93
Query: 99 FNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI 158
NKL+ ++ + L+KL ++ N +T + L+ L + + ID +
Sbjct: 94 SNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID------V 144
Query: 159 GNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLH 218
+ + L +LD N ++ + L +L N ++ L + + LN
Sbjct: 145 SHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCD 199
Query: 219 SNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNT 278
+N + + + +L + +N + I +T ++L D N + +T
Sbjct: 200 TNN----ITKLDLNQNIQLTFLDCS-SNKLTEID--VTPLTQLTYFDCSVNPLTELDVST 252
Query: 279 FGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF 338
L L+ + +L + + CRK+ L + N
Sbjct: 253 LSKLTTLHCIQ---TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT------------ 297
Query: 339 SASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDN 398
L + + + L+ L L+ +L + V +L+ LS +
Sbjct: 298 --QLYLLDCQAAGI-TELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNA 349
Query: 399 NLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILE 458
+++ + + +L + + +L + L
Sbjct: 350 HIQDF--------------------SSVGKIPALNNNFEAEGQTITMPKETLTNNS--LT 387
Query: 459 INLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS 491
I +S + L+ + V D + N ++
Sbjct: 388 IAVSPDLLDQFGNPMNIEPGDGGVYDQATNTIT 420
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 2e-18
Identities = 55/300 (18%), Positives = 107/300 (35%), Gaps = 35/300 (11%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNL 164
SIP+ G+ ++ + L NN IT + L L+ L + N I+ I
Sbjct: 45 SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEED------S 95
Query: 165 FDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQFS 223
F +L +LE L L N LS + + F +S++ LNL N +
Sbjct: 96 FS-----------------SLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 224 GRLPSTIGHSLPNIEYLTLAINNLIGTIPD-SLTNASKLIGLDLGSNSFSGHIPNTFGNL 282
+++ L ++ L + + I + L L++ ++ + P + ++
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197
Query: 283 RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFS--A 340
++++ L + SS+ C +L LD+ + +
Sbjct: 198 QNVSHLILHMKQHILLLEIF--VDVTSSVE-CLELRDTDLDTFHFSELSTGETNSLIKKF 254
Query: 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNL 400
+ ++ + L + K + + GL+ L N L L LQ + L N
Sbjct: 255 TFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 4e-15
Identities = 52/322 (16%), Positives = 94/322 (29%), Gaps = 68/322 (21%)
Query: 251 IPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSS 310
+ +++ + LDL +N + + +L L + +N + T + SS
Sbjct: 50 LTEAVKS------LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-----FSS 98
Query: 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLT 370
L + L +L L N L + F L L L
Sbjct: 99 LGS---LEHLDLSYNYLSNLSS---SWFK----------------------PLSSLTFLN 130
Query: 371 LDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPP-CLASL 429
L N ++G L+ L L + I A L
Sbjct: 131 LLGNPY-----KTLGETSLFSHLTK------------LQILRVGNMDTFTKIQRKDFAGL 173
Query: 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRN 488
T L EL + ++ L S P SL S++ + + L L + L+L
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT 232
Query: 489 QLSGNIPSTIGA--------LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540
L S + + + + + + + L L+ S N
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291
Query: 541 KIPKSLEALSHLKQFNVSQNML 562
+ L+ L++ + N
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 8e-13
Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 12/185 (6%)
Query: 390 LQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNK 441
++ L L +N + I L L L N ++ I +SL SL L L N
Sbjct: 54 VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111
Query: 442 LTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPS-TIG 499
L++ S L + +NL N +++ L L++L + I
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 500 ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQ 559
L LE L + ++ Q P+S+ S+ ++ L L + ++ S ++ +
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231
Query: 560 NMLEG 564
L+
Sbjct: 232 TDLDT 236
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 26/177 (14%), Positives = 62/177 (35%), Gaps = 22/177 (12%)
Query: 47 LNLSGMGLGGTIPPH-LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGS 105
L + M I L+FL L++ ++ + P L + + + +
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-L 212
Query: 106 IPTWI-GVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNL 164
+ V S ++ + LR+ ++ + L + +
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE----------------TNSLIKKFTF 256
Query: 165 FDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSN 220
++ + +L Q+ + + L L N L +P IF +++++ + LH+N
Sbjct: 257 RNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 1e-17
Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 21/229 (9%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSN 163
IP + + + L N + S F+ +L++L S I I G +LS+
Sbjct: 21 KIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77
Query: 164 LFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222
L L L N +Q + L +L+ L NL+ L I ++ T++ LN+ N
Sbjct: 78 LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 223 SGRLPSTIGHSLPNIEYLTLAINNLIGTIP----DSLTNASKLIG-LDLGSNSFSGHIPN 277
+L N+E+L L+ +N I +I L L LDL N + P
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLS-SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 278 TFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNP 326
F + L L++ TN L + L + L +NP
Sbjct: 196 AFKEI-RLKELALDTNQLKSVPDGI--------FDRLTSLQKIWLHTNP 235
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 5e-15
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 24/192 (12%)
Query: 362 NLRGLILLTLDFNDLNGTIPTSV-GTLQQLQGLSLEDNNLEGSIPYD-------LCHLEL 413
+ L +L L ++ TI +L L L L N ++ S+ L L
Sbjct: 50 SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107
Query: 414 NGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIP----SSLWSLEYILEINLSSNSLNDS 469
L+ + L +L+EL + N + S S+L +LE+ ++LSSN + S
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH---LDLSSNKIQ-S 163
Query: 470 LPSNV----QKLKVLRV-LDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGS 524
+ ++ +L + LDLS N ++ I + L+ L+L +NQ +
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222
Query: 525 LISLESLDLSGN 536
L SL+ + L N
Sbjct: 223 LTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 7e-15
Identities = 47/212 (22%), Positives = 75/212 (35%), Gaps = 30/212 (14%)
Query: 369 LTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGH 421
L L FN L S + +LQ L L ++ +I L L L GN +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-S 90
Query: 422 IPP-CLASLTSLRELRLGSNKLTS------SIPSSLWSLEYILEINLSSNSLNDSLPSNV 474
+ + L+SL++L L S +L L N++ N + S
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL------NVAHNLIQ-SFKLPE 143
Query: 475 --QKLKVLRVLDLSRNQLSGNIPSTIGALVDLE----TLSLASNQFQGPIPESVGSLISL 528
L L LDLS N++ + + L + +L L+ N I I L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRL 202
Query: 529 ESLDLSGNNFSGKIPKSLEALSHLKQFNVSQN 560
+ L L N + L+ L++ + N
Sbjct: 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 2e-14
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 404 IPYDLCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLS 462
+P+ +L+L+ N L H+ S L+ L L ++ + + SL ++ + L+
Sbjct: 26 LPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 463 SNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPS-TIGALVDLETLSLASNQFQG-PIP 519
N + SL L L+ L L+ ++ + IG L L+ L++A N Q +P
Sbjct: 85 GNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 520 ESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVS 558
E +L +LE LDLS N L L + N+S
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 5e-12
Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 20/227 (8%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF-NISTI 212
IP + + +LDL N L+ + L+ L L + I + ++S +
Sbjct: 22 IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHL 78
Query: 213 RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSL-TNASKLIGLDLGSNSF 271
L L N L L +++ L + ++ + + L L++ N
Sbjct: 79 STLILTGNPIQ-SLALGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 272 -SGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSY-LVLDSNPLGG 329
S +P F NL +L L + +N + + + L L L+ L L NP+
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-----LRVLHQMPLLNLSLDLSLNPMNF 191
Query: 330 ILPPLIGNFSA-SLQSFYAYECKLGGSIPKEI-GNLRGLILLTLDFN 374
I P G F L+ +L S+P I L L + L N
Sbjct: 192 IQP---GAFKEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 8e-11
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 7/137 (5%)
Query: 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRN 488
S + L L N L S +S + ++LS + ++ Q L L L L+ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86
Query: 489 QLSGNIPSTI-GALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNF-SGKIPKS 545
+ ++ L L+ L + G L +L+ L+++ N S K+P+
Sbjct: 87 PIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 546 LEALSHLKQFNVSQNML 562
L++L+ ++S N +
Sbjct: 145 FSNLTNLEHLDLSSNKI 161
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 5e-08
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 88 KLGRLKFISFSFNKLSGSIPTWI-GVLSKLQIMSLRNNNITGPIPNSLF-NLSKLEMLQA 145
L L+ + L+ S+ + G L L+ +++ +N I F NL+ LE L
Sbjct: 98 GLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 146 SFNVIDGNIPSGI-GNLSNL----FDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSG 200
S N I +I L + LDL N + I L+ LAL TN L
Sbjct: 157 SSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS 214
Query: 201 LIPPAIF-NISTIRVLNLHSN 220
+P IF +++++ + LH+N
Sbjct: 215 -VPDGIFDRLTSLQKIWLHTN 234
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 3e-17
Identities = 59/331 (17%), Positives = 107/331 (32%), Gaps = 16/331 (4%)
Query: 232 HSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHI-PNTFGNLRHLNVLSI 290
H + +++ L LT S++ L L + + T + + +
Sbjct: 242 HDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWL 301
Query: 291 RTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYEC 350
+ + Q +F T VL + + E
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVL-LKDRPECWCRDSATDEQLFRCELSVEK 360
Query: 351 KLGGSIPKEIGNLRGLILLTLDFNDLNGTI---PTSVGTLQQLQGLSLEDNNLEGSIPYD 407
+ E+ + + L L + TI ++ L + + L+ P
Sbjct: 361 ST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418
Query: 408 LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467
+L+ +K +R L L LT L L + ++LS N L
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR 476
Query: 468 DSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG-PIPESVGSLI 526
+LP + L+ L VL S N L N+ + L L+ L L +N+ Q + + S
Sbjct: 477 -ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCP 533
Query: 527 SLESLDLSGNNFSGK---IPKSLEALSHLKQ 554
L L+L GN+ + + E L +
Sbjct: 534 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 1e-11
Identities = 38/210 (18%), Positives = 76/210 (36%), Gaps = 15/210 (7%)
Query: 36 SCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLG--RLK 93
S + ++ L TI + L L+ TL F + L + R
Sbjct: 366 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-----STLKAVDPMRAA 420
Query: 94 FISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGN 153
++ +K + ++++ L + ++T + + L L + L S N +
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A 477
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL-IPPAIFNISTI 212
+P + L L L N L++ + + NL L+ L L N L + + +
Sbjct: 478 LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535
Query: 213 RVLNLHSNQFSG--RLPSTIGHSLPNIEYL 240
+LNL N + + LP++ +
Sbjct: 536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 62.1 bits (150), Expect = 2e-10
Identities = 54/331 (16%), Positives = 102/331 (30%), Gaps = 22/331 (6%)
Query: 169 LRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPS 228
H L + S ++ P + + +L + S +
Sbjct: 230 FYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT 289
Query: 229 TIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVL 288
G + P+ + + +L + + GS+S +
Sbjct: 290 PDGRNRPSHVW----LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDS 345
Query: 289 SIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNP--LGGILPPLIGNFSASLQSFY 346
+ E S S L +C++L L ++ L IL + +
Sbjct: 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 405
Query: 347 AYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY 406
Y L P L L + ++ L L +L + +
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLR------SKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH 458
Query: 407 -----DLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINL 461
+ HL+L+ N+L +PP LA+L L L+ N L + + +L + E+ L
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--VDGVANLPRLQELLL 515
Query: 462 SSNSLND-SLPSNVQKLKVLRVLDLSRNQLS 491
+N L + + L +L+L N L
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 3e-09
Identities = 43/312 (13%), Positives = 87/312 (27%), Gaps = 11/312 (3%)
Query: 258 ASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKL 317
D S + G +VL + S L+ + L
Sbjct: 215 VQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTL 274
Query: 318 SYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLT----LDF 373
+V ++ P N + + L +P+ + + +
Sbjct: 275 LLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLL 334
Query: 374 NDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPP--CLASLTS 431
D T +QL L EL + + + +
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA 394
Query: 432 LRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS 491
L L L ++ + + +RVL L+ L+
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454
Query: 492 GNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSH 551
+ + L+ + L L+ N+ + +P ++ +L LE L S N + + L
Sbjct: 455 -VLCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD-GVANLPR 509
Query: 552 LKQFNVSQNMLE 563
L++ + N L+
Sbjct: 510 LQELLLCNNRLQ 521
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 7e-17
Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 8/173 (4%)
Query: 369 LTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD----LCHLELNGNKLSGHIPP 424
L L N L ++ +L L+L+ L L L+L+ N+L +P
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPL 94
Query: 425 CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVL 483
+L +L L + N+LTS +L L + E+ L N L +LP + L L
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKL 153
Query: 484 DLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 536
L+ N L+ + L +L+TL L N IP+ L L GN
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 8e-16
Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS-SIPSSLWSLEYILEINLS 462
+P D L L+ N L L T L +L L +LT + +L L ++LS
Sbjct: 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG---TLDLS 85
Query: 463 SNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTI-GALVDLETLSLASNQFQGPIPES 521
N L SLP Q L L VLD+S N+L+ ++P L +L+ L L N+ + +P
Sbjct: 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPG 142
Query: 522 V-GSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
+ LE L L+ NN + L L +L + +N L
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 3e-15
Identities = 50/223 (22%), Positives = 78/223 (34%), Gaps = 41/223 (18%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNL 164
++P + I+ L N + +L ++L L + + G L L
Sbjct: 24 ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVL 79
Query: 165 FDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQFS 223
LDL HN LQ +P L L L + N L+ L P + ++ L L N+
Sbjct: 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELK 137
Query: 224 GRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLR 283
LP + P +E L+LA NN + +P L
Sbjct: 138 -TLPPGLLTPTPKLEKLSLA-NNNLTELP-----------------------AGLLNGLE 172
Query: 284 HLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNP 326
+L+ L ++ N+L T F S L + L NP
Sbjct: 173 NLDTLLLQENSLYTIPKGF----FGSH-----LLPFAFLHGNP 206
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 36/178 (20%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106
LNL L T G L L +LD++ N LP L L + SFN+L+ S+
Sbjct: 60 LNLDRAEL--TKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 107 PTWIGV---LSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSN 163
P G L +LQ + L+ N + +P L
Sbjct: 116 PL--GALRGLGELQELYLKGNELKT-LPPGLLT-----------------------PTPK 149
Query: 164 LFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSN 220
L L L +NNL ++P + L+NL++L L N+L IP F + LH N
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 5e-16
Identities = 56/165 (33%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS---SIPSSLWSLEYILEIN 460
IP D L+L NKLS LT LR L L NKL + I L +LE +
Sbjct: 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET---LW 91
Query: 461 LSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTI-GALVDLETLSLASNQFQGPI 518
++ N L +LP V +L L L L RNQL ++P + +L L LSL N+ Q +
Sbjct: 92 VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS-L 148
Query: 519 PESV-GSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNML 562
P+ V L SL+ L L N + + L+ LK + N L
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 6e-15
Identities = 58/180 (32%), Positives = 81/180 (45%), Gaps = 18/180 (10%)
Query: 369 LTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCH-------LELNGNKLSGH 421
L L N L+ + L +L+ L L DN L+ ++P + L + NKL
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-A 99
Query: 422 IPPCL-ASLTSLRELRLGSNKLTS---SIPSSLWSLEYILEINLSSNSLNDSLPSNV-QK 476
+P + L +L ELRL N+L S + SL L Y+ +L N L SLP V K
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL---SLGYNEL-QSLPKGVFDK 155
Query: 477 LKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 536
L L+ L L NQL L +L+TL L +NQ + + SL L+ L L N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 9/192 (4%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSN 163
+IP+ + + + + L++N ++ + L+KL +L + N + +P+GI L N
Sbjct: 30 AIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 164 LFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQ 221
L L + N LQ +P + L NL L L N L L PP +F +++ + L+L N+
Sbjct: 87 LETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNE 144
Query: 222 FSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281
LP + L +++ L L N L + ++L L L +N F +
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203
Query: 282 LRHLNVLSIRTN 293
L L +L ++ N
Sbjct: 204 LEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 11/181 (6%)
Query: 70 SLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWI-GVLSKLQIMSLRNNNITG 128
LD+ N +L +L+ + + NKL ++P I L L+ + + +N +
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 129 PIPNSLF-NLSKLEMLQASFNVIDGNIPSGI-GNLSNLFDLDLRHNNLQDQIPTEI-GNL 185
+P +F L L L+ N + ++P + +L+ L L L +N LQ +P + L
Sbjct: 100 -LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKL 156
Query: 186 QNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAI 244
+L+ L L N L +P F ++ ++ L L +NQ R+P SL ++ L L
Sbjct: 157 TSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQE 214
Query: 245 N 245
N
Sbjct: 215 N 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 58/224 (25%), Positives = 80/224 (35%), Gaps = 53/224 (23%)
Query: 251 IPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSS 310
IP LDL SN S F L L +L + N L T +
Sbjct: 35 IPADTKK------LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-----FKE 83
Query: 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEI-GNLRGLILL 369
L N L L + N L ++P + L L L
Sbjct: 84 LKN---LETLWVTDNKLQ--------------------------ALPIGVFDQLVNLAEL 114
Query: 370 TLDFNDLNGTIPTSV-GTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGH 421
LD N L ++P V +L +L LSL N L+ S+P L L L N+L
Sbjct: 115 RLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-R 171
Query: 422 IPPCL-ASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSN 464
+P LT L+ L+L +N+L + SLE + + L N
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 5e-08
Identities = 60/247 (24%), Positives = 84/247 (34%), Gaps = 70/247 (28%)
Query: 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKL 261
IP I + + L+L SN+ S LPS H L + L
Sbjct: 31 IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLL--------------------- 66
Query: 262 IGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLV 321
L N F L++L L + N L L N L+ L
Sbjct: 67 ---YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV-----FDQLVN---LAELR 115
Query: 322 LDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIP 381
LD N L LPP F +L L L+L +N+L ++P
Sbjct: 116 LDRNQLKS-LPP--RVFD----------------------SLTKLTYLSLGYNELQ-SLP 149
Query: 382 TSV-GTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGHIPPCLASLTSLR 433
V L L+ L L +N L+ +P L L+L+ N+L SL L+
Sbjct: 150 KGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Query: 434 ELRLGSN 440
L+L N
Sbjct: 209 MLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 57/226 (25%), Positives = 86/226 (38%), Gaps = 50/226 (22%)
Query: 178 IPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNI 237
IP + + L L +N LS L A ++ +R+L L+ N+ LP+ I L N+
Sbjct: 35 IPA------DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNL 87
Query: 238 EYLTLAINNLIGTIP----DSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTN 293
E L + +N + +P D L N L L L N P F +L L LS+ N
Sbjct: 88 ETLWVT-DNKLQALPIGVFDQLVN---LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 294 NLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLG 353
L + LT+ L L L +N L
Sbjct: 144 ELQSLPKGV-----FDKLTS---LKELRLYNNQL-------------------------- 169
Query: 354 GSIPKEI-GNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDN 398
+P+ L L L LD N L + +L++L+ L L++N
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 80.2 bits (197), Expect = 6e-16
Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 29/217 (13%)
Query: 113 LSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHN 172
++ +L+ ++T + + L+ ++ + A+ + I ++ GI L N+ L L N
Sbjct: 20 FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGN 75
Query: 173 NLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGH 232
L D P + NL+NL L L N + L + ++ ++ L+L N S I
Sbjct: 76 KLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGI-----SDING 126
Query: 233 --SLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSI 290
LP +E L L NN I I L+ +KL L L N S I L L L +
Sbjct: 127 LVHLPQLESLYLG-NNKITDI-TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYL 182
Query: 291 RTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327
N+++ L +L + L L L S
Sbjct: 183 SKNHISD----------LRALAGLKNLDVLELFSQEC 209
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 3e-15
Identities = 56/303 (18%), Positives = 103/303 (33%), Gaps = 19/303 (6%)
Query: 62 LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121
+ + ++ + +L + I + + + S+ I L + + L
Sbjct: 17 DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFL 72
Query: 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTE 181
N +T I L NL L L N I ++ S + +L L L L HN + D
Sbjct: 73 NGNKLTD-IKP-LTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGISDING-- 126
Query: 182 IGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241
+ +L LESL LG N ++ + + ++ + L+L NQ S L ++ L
Sbjct: 127 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLY 181
Query: 242 LAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTES-- 299
L+ N I + +L L L+L S N NL N + +L T
Sbjct: 182 LS-KNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 239
Query: 300 SSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKE 359
S + + + + + V + F + + +
Sbjct: 240 SDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGT 299
Query: 360 IGN 362
+
Sbjct: 300 VIK 302
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 76.7 bits (188), Expect = 7e-15
Identities = 61/323 (18%), Positives = 107/323 (33%), Gaps = 56/323 (17%)
Query: 241 TLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESS 300
T+ ++ I I ++ I +L S + T L ++ + +++ +
Sbjct: 4 TITVSTPIKQIFP-DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--- 57
Query: 301 SADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEI 360
+ + ++ L L+ N L I P +
Sbjct: 58 -------VQGIQYLPNVTKLFLNGNKLTDIKP---------------------------L 83
Query: 361 GNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY-----DLCHLELNG 415
NL+ L L LD N + + L++L+ LSLE N + I L L L
Sbjct: 84 TNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGN 140
Query: 416 NKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQ 475
NK++ I L+ LT L L L N+++ L L + + LS N ++D +
Sbjct: 141 NKIT-DITV-LSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISD--LRALA 194
Query: 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 535
LK L VL+L + + LV T+ P S E ++
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS--DDGDYEKPNVKW 252
Query: 536 NNFSGKIPKSLEALSHLKQFNVS 558
+ S +
Sbjct: 253 HLPEFTNEVSFIFYQPVTIGKAK 275
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 74.8 bits (183), Expect = 3e-14
Identities = 48/255 (18%), Positives = 87/255 (34%), Gaps = 35/255 (13%)
Query: 308 LSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLI 367
+ + L + + + S+ A + S+ + I L +
Sbjct: 14 IFPDDAFAETIKDNLKKKSVTDAVT--QNELN-SIDQIIANNSDIK-SV-QGIQYLPNVT 68
Query: 368 LLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLA 427
L L+ N L ++ L L +L L L+ NK+ + L
Sbjct: 69 KLFLNGNKLT--------DIKPLTNLK------------NLGWLFLDENKIK-DLSS-LK 106
Query: 428 SLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSR 487
L L+ L L N ++ + L L + + L +N + D + + +L L L L
Sbjct: 107 DLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLED 162
Query: 488 NQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLE 547
NQ+S +I + L L+ L L+ N ++ L +L+ L+L K
Sbjct: 163 NQIS-DIVP-LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQS 218
Query: 548 ALSHLKQFNVSQNML 562
L + L
Sbjct: 219 NLVVPNTVKNTDGSL 233
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 2e-13
Identities = 54/291 (18%), Positives = 99/291 (34%), Gaps = 27/291 (9%)
Query: 156 SGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVL 215
+ +L+ ++ D + L +++ + +++ + I + + L
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKL 70
Query: 216 NLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHI 275
L+ N+ + P T +L N+ +L L N I + SL + KL L L N S I
Sbjct: 71 FLNGNKLTDIKPLT---NLKNLGWLFLD-ENKIKDL-SSLKDLKKLKSLSLEHNGIS-DI 124
Query: 276 PNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLI 335
+L L L + N +T ++ L+ KL L L+ N + I PL
Sbjct: 125 NG-LVHLPQLESLYLGNNKITD----------ITVLSRLTKLDTLSLEDNQISDI-VPLA 172
Query: 336 GNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSL 395
G LQ+ Y + + S + + L+ L +L L + L +
Sbjct: 173 GL--TKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228
Query: 396 EDNNLEGSIPYDLCHLELNGNKLSGHIPPCLA-SLTSLRELRLGSNKLTSS 445
D +L N S + + +G K
Sbjct: 229 TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 279
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 4e-12
Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 12/156 (7%)
Query: 408 LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467
L ++ L S+ ++ ++ + S + L + ++ L+ N L
Sbjct: 23 TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT 78
Query: 468 DSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLIS 527
D + LK L L L N++ ++ S++ L L++LSL N + L
Sbjct: 79 DI--KPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS--DINGLVHLPQ 132
Query: 528 LESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
LESL L N + L L+ L ++ N +
Sbjct: 133 LESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 166
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 1e-15
Identities = 46/296 (15%), Positives = 85/296 (28%), Gaps = 34/296 (11%)
Query: 279 FGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF 338
+G R L L R + D + L L + + + +
Sbjct: 39 YGGGRSLEYLLKRVDTEADLGQFTD-------IIKSLSLKRLTVRAARIPSRILFGALRV 91
Query: 339 SA--SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLE 396
LQ ++ G+ P + G L L+ +++
Sbjct: 92 LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS------------WATRDAW 139
Query: 397 DNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSI-------PSS 449
L+ + L L + + +L L L N P
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199
Query: 450 LWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVD-LETLS 508
+L+ + N + + + L+ LDLS N L + L +L+
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259
Query: 509 LASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564
L+ + +P+ + + L LDLS N P E L + ++ N
Sbjct: 260 LSFTGLKQ-VPKGLPA--KLSVLDLSYNRLDR-NPSPDE-LPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 2e-12
Identities = 54/280 (19%), Positives = 96/280 (34%), Gaps = 22/280 (7%)
Query: 136 NLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPT---EIGNLQNLESLA 192
S +L+ D + I +L L +R + +I + + L+ L
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 193 LGTNNLSGLIPPAIF-----NISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL 247
L ++G PP + +++ + + N+ L P ++ L++A +
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161
Query: 248 IGTIPDSLTNASKLIGLDLGSNSFSGHIPNT----FGNLRHLNVLSIRTNNLTTESSSAD 303
+ + + L LDL N G L VL++R + T S
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS---- 217
Query: 304 QWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNL 363
+ +L L L N L ++ + L S L +PK +
Sbjct: 218 -GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGL--P 273
Query: 364 RGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGS 403
L +L L +N L+ S L Q+ LSL+ N S
Sbjct: 274 AKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 2e-11
Identities = 39/246 (15%), Positives = 78/246 (31%), Gaps = 18/246 (7%)
Query: 64 NLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRN 123
+L L + + + + L+ ++ +++G+ P + + + L
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 124 NNITGPIPNSLFN------LSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ 177
N++ ++ L++L + + L LDL N +
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188
Query: 178 I-------PTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTI 230
P + LQ L G SG+ ++ L+L N +
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248
Query: 231 GHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSI 290
+ L L+ + +P L +KL LDL N P+ L + LS+
Sbjct: 249 CDWPSQLNSLNLS-FTGLKQVPKGL--PAKLSVLDLSYNRLD-RNPS-PDELPQVGNLSL 303
Query: 291 RTNNLT 296
+ N
Sbjct: 304 KGNPFL 309
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 3e-11
Identities = 47/251 (18%), Positives = 75/251 (29%), Gaps = 22/251 (8%)
Query: 233 SLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRT 292
SL + I + I + S L L L + +G P ++ +
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 293 NNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQ-------SF 345
N++ + A L L L + + F +L
Sbjct: 129 RNVSWATRDAWLAELQQWLK--PGLKVLSIAQAHSLNFSCEQVRVFP-ALSTLDLSDNPE 185
Query: 346 YAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP 405
+ P + L+ L L +G QLQGL L N+L +
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 406 YDLC-------HLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILE 458
C L L+ L +P L + L L L N+L + S L +
Sbjct: 246 APSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLDRN--PSPDELPQVGN 300
Query: 459 INLSSNSLNDS 469
++L N DS
Sbjct: 301 LSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 14/206 (6%)
Query: 4 ISFTSNLFQSHLAIMLLYLLK-TTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHL 62
+ L + + +L L + R +W+ +K L+++ +
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169
Query: 63 GNLSFLMSLDVTLNNFYGHL-------PNELGKLGRLKFISFSFNKLSGSIPTWIGVLSK 115
L +LD++ N G P + L L + SG +
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229
Query: 116 LQIMSLRNNNITGPIPNSLF-NLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNL 174
LQ + L +N++ S+L L SF + +P G+ + L LDL +N L
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLSYNRL 286
Query: 175 QDQIPTEIGNLQNLESLALGTNNLSG 200
P L + +L+L N
Sbjct: 287 DR-NP-SPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 17/147 (11%), Positives = 47/147 (31%), Gaps = 9/147 (6%)
Query: 435 LRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKV---LRVLDLSRNQLS 491
L+ + + + + + + + + + ++ L+ L L +++
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 492 GNIPSTIGALV--DLETLSLASNQFQGPIPE----SVGSLISLESLDLSGNNFSGKIPKS 545
G P + DL L+L + + L+ L ++ + +
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 546 LEALSHLKQFNVSQNMLEGEIPVKGSF 572
+ L ++S N GE + +
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISAL 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 1e-15
Identities = 31/183 (16%), Positives = 73/183 (39%), Gaps = 12/183 (6%)
Query: 362 NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD----LCHLELNGNK 417
+ + L + T + + L ++L + N+ + + L +N
Sbjct: 21 TFKAYLNGLLG---QSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH 77
Query: 418 LSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKL 477
+ + P ++ L++L LR+ +TS +L L + +++S ++ +DS+ + + L
Sbjct: 78 AT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135
Query: 478 KVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNN 537
+ +DLS N +I + L +L++L++ + + L L
Sbjct: 136 PKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192
Query: 538 FSG 540
G
Sbjct: 193 IGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 3e-13
Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 9/165 (5%)
Query: 87 GKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQAS 146
++ L +I+ + ++ I ++ +++ N + T P + LS LE L+
Sbjct: 41 AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96
Query: 147 FNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAI 206
+ + + L++L LD+ H+ D I T+I L + S+ L N I P +
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-L 155
Query: 207 FNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTI 251
+ ++ LN+ + P + L + IG
Sbjct: 156 KTLPELKSLNIQFDGVHDYRGIE---DFPKLNQLYAF-SQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 4e-13
Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 5/134 (3%)
Query: 427 ASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLS 486
A + SL + L + +T + + I ++ +++ + + + L L L +
Sbjct: 41 AQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIM 96
Query: 487 RNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSL 546
++ + + L L L ++ + I + +L + S+DLS N I L
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPL 155
Query: 547 EALSHLKQFNVSQN 560
+ L LK N+ +
Sbjct: 156 KTLPELKSLNIQFD 169
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-12
Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 9/159 (5%)
Query: 359 EIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD----LCHLELN 414
+ L +TL ++ T + ++ L++ + + P L L +
Sbjct: 39 TEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIM 96
Query: 415 GNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV 474
G ++ P L+ LTSL L + + SI + + +L + I+LS N + +
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPL 155
Query: 475 QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQ 513
+ L L+ L++ + + I L L S
Sbjct: 156 KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 4e-12
Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 3/116 (2%)
Query: 86 LGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQA 145
+ L L+ + ++ + L+ L ++ + ++ I + L K+ +
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143
Query: 146 SFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL 201
S+N +I + L L L+++ + + D I + L L + + G
Sbjct: 144 SYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 5e-11
Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 7/136 (5%)
Query: 427 ASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLS 486
++ + LG + + + + SL I L++ ++ D + ++ ++ L ++
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLT---YITLANINVTDL--TGIEYAHNIKDLTIN 74
Query: 487 RNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSL 546
+ + I L +LE L + ++ L SL LD+S + I +
Sbjct: 75 NIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132
Query: 547 EALSHLKQFNVSQNML 562
L + ++S N
Sbjct: 133 NTLPKVNSIDLSYNGA 148
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 5e-11
Identities = 35/212 (16%), Positives = 70/212 (33%), Gaps = 25/212 (11%)
Query: 238 EYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTT 297
E L + IPDS + LG +S + T + L +++ N+T
Sbjct: 4 EQTGLKASQDNVNIPDS--TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD 58
Query: 298 ESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIP 357
L+ + + L +++ P I S +L+ +
Sbjct: 59 ----------LTGIEYAHNIKDLTINNIHATNYNP--ISGLS-NLERLRIMGKDVTSDKI 105
Query: 358 KEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY-----DLCHLE 412
+ L L LL + + + +I T + TL ++ + L N I +L L
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLN 165
Query: 413 LNGNKLSGHIPPCLASLTSLRELRLGSNKLTS 444
+ + + + + L +L S +
Sbjct: 166 IQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 32/195 (16%), Positives = 69/195 (35%), Gaps = 20/195 (10%)
Query: 160 NLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHS 219
+ L ++ + + +L + L N++ L I I+ L +++
Sbjct: 21 TFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75
Query: 220 NQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTF 279
+ + I L N+E L + ++ +L+ + L LD+ ++ I
Sbjct: 76 IHATN--YNPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132
Query: 280 GNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFS 339
L +N + + N T+ + L +L L + + + I +F
Sbjct: 133 NTLPKVNSIDLSYNGAITD---------IMPLKTLPELKSLNIQFDGVHDYRG--IEDFP 181
Query: 340 ASLQSFYAYECKLGG 354
L YA+ +GG
Sbjct: 182 -KLNQLYAFSQTIGG 195
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 1e-15
Identities = 42/237 (17%), Positives = 75/237 (31%), Gaps = 19/237 (8%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSN 163
IP+ + + + + LE ++ S N + I + + NL
Sbjct: 23 EIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80
Query: 164 LFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222
L ++ + N I E NL NL+ L + + L + +L++ N
Sbjct: 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140
Query: 223 SGRLPSTIGHSLP-NIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIP-NTFG 280
+ L L L N I I +S N ++L L+L N+ +P + F
Sbjct: 141 IHTIERNSFVGLSFESVILWLN-KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199
Query: 281 NLRHLNVLSIRTNNLTT------------ESSSADQWSFLSSLTNCRKLSYLVLDSN 325
+L I + + + S L +L L L
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 8e-12
Identities = 34/217 (15%), Positives = 67/217 (30%), Gaps = 14/217 (6%)
Query: 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD------- 407
IP ++ R I L L + L+ + + N++ I D
Sbjct: 23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80
Query: 408 LCHLEL-NGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNS 465
L + + N L +I P +L +L+ L + + + + +++ N
Sbjct: 81 LHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139
Query: 466 LNDSLPSNV-QKLKV-LRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVG 523
++ N L +L L++N + S E +N + +
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199
Query: 524 SLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQN 560
LD+S LE L L+ +
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 45/326 (13%), Positives = 103/326 (31%), Gaps = 63/326 (19%)
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRL 226
+ + + +IP+++ +N L L + A + + + N +
Sbjct: 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70
Query: 227 PSTIGHSLPNIEYLTLAINNLIGTIP-DSLTNASKLIGLDLGSNSFSGHIPN-TFGNLRH 284
+ + +LP + + + N + I ++ N L L + + H+P+ +
Sbjct: 71 EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQ 129
Query: 285 LNVLSIRTNN-LTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQ 343
+L I+ N + T ++ L+ + L L+ N + I
Sbjct: 130 KVLLDIQDNINIHTIERNS-----FVGLSF--ESVILWLNKNGIQEIHN----------- 171
Query: 344 SFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGS 403
G L L+ +D N G
Sbjct: 172 -----------------SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV--------- 205
Query: 404 IPYDLCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLS 462
L+++ ++ +P L +L LR + K +P +L L ++E +L+
Sbjct: 206 ------ILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLT 254
Query: 463 SNSLNDSLPSNVQKLKVLRVLDLSRN 488
S + + +++ L +
Sbjct: 255 YPSHCCAFANWRRQISELHPICNKSI 280
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 14/186 (7%)
Query: 390 LQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGHIPP-CLASLTSLRELRL-GSN 440
L L I L +E++ N + I ++L L E+R+ +N
Sbjct: 32 AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 441 KLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTI-- 498
L P + +L + + +S+ + + +LD+ N I
Sbjct: 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150
Query: 499 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPK-SLEALSHLKQFNV 557
G + L L N Q I S + L+ L+LS NN ++P S ++
Sbjct: 151 GLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209
Query: 558 SQNMLE 563
S+ +
Sbjct: 210 SRTRIH 215
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 2e-15
Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 10/162 (6%)
Query: 404 IPYDLCHLELNGNKLSGHIPP--CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINL 461
+P L+L+ N LS + LT+L L L N L + + + ++L
Sbjct: 37 LPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95
Query: 462 SSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPE 520
SSN L+ +L + L+ L VL L N + + + L+ L L+ NQ P
Sbjct: 96 SSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPV 153
Query: 521 SV----GSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVS 558
+ L L LDLS N L+ L + +
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 3e-13
Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 20/165 (12%)
Query: 390 LQGLSLEDNNLEGSIPYD--------LCHLELNGNKLSGHIPPC-LASLTSLRELRLGSN 440
L L NNL + + L L L+ N L+ I + +LR L L SN
Sbjct: 41 TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98
Query: 441 KLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIP---- 495
L + L+ + + L +N + + N + + L+ L LS+NQ+S P
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELI 156
Query: 496 STIGALVDLETLSLASNQFQGPIPESVGSLISL--ESLDLSGNNF 538
L L L L+SN+ + + L + L L N
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 6e-11
Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 15/173 (8%)
Query: 130 IPNSLFNLSKLEMLQASFNVIDGNIPSGI--GNLSNLFDLDLRHNNLQDQIPTEI-GNLQ 186
+P SL S +L S N + + + L+NL L L HN+L I +E +
Sbjct: 33 VPQSLP--SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88
Query: 187 NLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAIN 245
NL L L +N+L L +F ++ + VL L++N + + ++ L L+
Sbjct: 89 NLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLS-Q 145
Query: 246 NLIGTIP----DSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNN 294
N I P KL+ LDL SN L + +N
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 6e-10
Identities = 46/190 (24%), Positives = 66/190 (34%), Gaps = 37/190 (19%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEI--GNLQNLESLALGTNNLSGLIPPAIF-NIS 210
+P + S LDL HNNL ++ E L NL SL L N+L+ I F +
Sbjct: 33 VPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88
Query: 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270
+R L+L SN L + L +E L L NN I +
Sbjct: 89 NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY-NNHIVVVD------------------ 128
Query: 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330
N F ++ L L + N ++ + KL L L SN L +
Sbjct: 129 -----RNAFEDMAQLQKLYLSQNQISRFPVEL-----IKDGNKLPKLMLLDLSSNKLKKL 178
Query: 331 LPPLIGNFSA 340
+ A
Sbjct: 179 PLTDLQKLPA 188
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-14
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 404 IPYDLCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLS 462
+P + + L N + IPP + LR + L +N+++ P + L + + L
Sbjct: 30 LPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 463 SNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPES 521
N + LP ++ + L L++L L+ N+++ L +L LSL N+ Q +
Sbjct: 89 GNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147
Query: 522 VGSLISLESLDLSGNNF 538
L +++++ L+ N F
Sbjct: 148 FSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 9e-11
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 9/144 (6%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSN 163
IPT + + + L N I P + KL + S N I + L +
Sbjct: 25 EIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81
Query: 164 LFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQ 221
L L L N + + +P + L +L+ L L N ++ + F ++ + +L+L+ N+
Sbjct: 82 LNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNK 139
Query: 222 FSGRLPSTIGHSLPNIEYLTLAIN 245
+ L I+ + LA N
Sbjct: 140 LQ-TIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 6/131 (4%)
Query: 95 ISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN-LSKLEMLQASFNVIDGN 153
I N + P KL+ + L NN I+ + F L L L N I
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT-E 94
Query: 154 IPSGI-GNLSNLFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIFNIST 211
+P + L +L L L N + + + +L NL L+L N L + +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 212 IRVLNLHSNQF 222
I+ ++L N F
Sbjct: 154 IQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 36/192 (18%), Positives = 63/192 (32%), Gaps = 61/192 (31%)
Query: 251 IPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSS 310
+P+++T + L N+ P F + L + + N ++ + A
Sbjct: 30 LPETITE------IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-----FQG 78
Query: 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEI-GNLRGLILL 369
L + L+ LVL N + +PK + L L LL
Sbjct: 79 LRS---LNSLVLYGNKI--------------------------TELPKSLFEGLFSLQLL 109
Query: 370 TLDFNDLNGTIPTSV-GTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLAS 428
L+ N +N + L L LSL DN L+ +I +
Sbjct: 110 LLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGT-----------------FSP 150
Query: 429 LTSLRELRLGSN 440
L +++ + L N
Sbjct: 151 LRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 36/143 (25%), Positives = 55/143 (38%), Gaps = 15/143 (10%)
Query: 235 PNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNN 294
I + L N + P + + KL +DL +N S P+ F LR LN L + N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 295 LTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFS--ASLQSFYAYECKL 352
+T S L L L+L++N + + F +L Y+ KL
Sbjct: 92 ITELPKSL-----FEGLF---SLQLLLLNANKINCLRV---DAFQDLHNLNLLSLYDNKL 140
Query: 353 GGSIPKEI-GNLRGLILLTLDFN 374
+I K LR + + L N
Sbjct: 141 -QTIAKGTFSPLRAIQTMHLAQN 162
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 4e-14
Identities = 89/484 (18%), Positives = 171/484 (35%), Gaps = 84/484 (17%)
Query: 114 SKLQIMSLRNNNITGP-IPNSLFNLSKLEMLQASFNVID----GNIPSGIGNLSNLFDLD 168
+Q + ++ ++ L L + ++++ + +I S + L +L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 169 LRHNNLQDQIPTEIGNL-----QNLESLALGTNNLS----GLIPPAIFNISTIRVLNLHS 219
LR N L D + ++ L+L L+ G++ + + T++ L+L
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 220 NQFSGR----LPSTIGHSLPNIEYLTLAINNL----IGTIPDSLTNASKLIGLDLGSNSF 271
N L + +E L L +L + L L + +N
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 272 SG----HIPNTFG-NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNP 326
+ + + L L + + +T+++ + + L L L SN
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD----LCGIVASKASLRELALGSNK 238
Query: 327 LGGI----LPPLIGNFSASLQSFYAYECKLG----GSIPKEIGNLRGLILLTLDFNDLNG 378
LG + L P + + S+ L++ + +EC + G + + + L L+L N+L
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-- 296
Query: 379 TIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG----HIPPCLASLTSLRE 434
G + L LE L + + H LA L E
Sbjct: 297 ---GDEGARLLCETLLEPGCQLE--------SLWVKSCSFTAACCSHFSSVLAQNRFLLE 345
Query: 435 LRLGSNKLTSS----IPSSLWSLEYILE-INLSSNSLND----SLPSNVQKLKVLRVLDL 485
L++ +N+L + + L +L + L+ ++D SL + + LR LDL
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405
Query: 486 SRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKS 545
S N L + I LV+ S+ LE L L +S ++
Sbjct: 406 SNNCLG---DAGILQLVE----SVRQPGC------------LLEQLVLYDIYWSEEMEDR 446
Query: 546 LEAL 549
L+AL
Sbjct: 447 LQAL 450
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 9e-14
Identities = 77/405 (19%), Positives = 131/405 (32%), Gaps = 71/405 (17%)
Query: 210 STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL----IGTIPDSLTNASKLIGLD 265
I+ L++ + S + + L + + L L I +L L L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 266 LGSNSFSG----------HIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCR 315
L SN P+ + LS++ LT S+L
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSC-----KIQKLSLQNCCLTGAGCGV----LSSTLRTLP 113
Query: 316 KLSYLVLDSNPLGG----ILPPLIGNFSASLQSFYAYECKLG----GSIPKEIGNLRGLI 367
L L L N LG +L + + L+ C L + +
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173
Query: 368 LLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLS----GHIP 423
LT+ ND+N V L Q L+D+ + L L+L ++ +
Sbjct: 174 ELTVSNNDIN---EAGVRVLCQ----GLKDSPCQ------LEALKLESCGVTSDNCRDLC 220
Query: 424 PCLASLTSLRELRLGSNKLTSS-----IPSSLWSLEYILEINLSSNSLND----SLPSNV 474
+AS SLREL LGSNKL P L + + + + L +
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280
Query: 475 QKLKVLRVLDLSRNQLSGNIPSTIGALVD-----LETLSLASNQFQGPIPESVGSLI--- 526
+ + L+ L L+ N+L + + LE+L + S F S++
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340
Query: 527 -SLESLDLSGNNFSGKIPKSL-EALSH----LKQFNVSQNMLEGE 565
L L +S N + L + L L+ ++ +
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 7e-14
Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 7/193 (3%)
Query: 111 GVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSNLFDLDL 169
+ Q + L ++ ++ NL + + S +V + S NLS + +++
Sbjct: 28 SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87
Query: 170 RHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIP-PAIFNISTIRVLNLHSNQFSGRLP 227
R+ I + L L+ L + L +++ +L + N + +P
Sbjct: 88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147
Query: 228 STIGHSLPN-IEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIP-NTFGNLRH- 284
L N L L NN ++ N +KL + L N + I + FG +
Sbjct: 148 VNAFQGLCNETLTLKLY-NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206
Query: 285 LNVLSIRTNNLTT 297
++L + ++T
Sbjct: 207 PSLLDVSQTSVTA 219
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-12
Identities = 41/209 (19%), Positives = 74/209 (35%), Gaps = 18/209 (8%)
Query: 363 LRGLILLTLDFNDLNGTIPTSV-GTLQQLQGLSLEDNNLEGSIPYD-------LCHLELN 414
L L L TIP+ L + + + + + + H+E+
Sbjct: 30 PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88
Query: 415 GNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIP--SSLWSLEYILEINLSSNSLNDSLP 471
+ +I P L L L+ L + + L P + ++S + + ++ N S+P
Sbjct: 89 NTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIP 147
Query: 472 SNV-QKL-KVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV--GSLIS 527
N Q L L L N + ++ L+ + L N++ I + G
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206
Query: 528 LESLDLSGNNFSGKIPKSLEALSHLKQFN 556
LD+S + + K LE L L N
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELIARN 235
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-10
Identities = 34/206 (16%), Positives = 70/206 (33%), Gaps = 11/206 (5%)
Query: 92 LKFISFSFNKLSGSIPTWI-GVLSKLQIMSLRNNNITGPIPNSLF-NLSKLEMLQASFNV 149
+ + L +IP+ L + + + + + + F NLSK+ ++
Sbjct: 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 150 IDGNIPSGI-GNLSNLFDLDLRHNNLQD-QIPTEIGNLQNLESLALGTNNLSGLIPPAIF 207
I L L L + + L+ T++ + L + N IP F
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151
Query: 208 N--ISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP-DSLTNA-SKLIG 263
+ L L++N F+ + + ++ + L N + I D+ S
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209
Query: 264 LDLGSNSFSGHIPNTFGNLRHLNVLS 289
LD+ S + +L+ L +
Sbjct: 210 LDVSQTSVTALPSKGLEHLKELIARN 235
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-09
Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 19/214 (8%)
Query: 120 SLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLSNLFDLDLRHNNLQDQI 178
+ +I IP+ + L++ + IPS NL N+ + + + Q+
Sbjct: 17 RVTCKDIQR-IPSLPPSTQTLKL---IETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQL 71
Query: 179 PTEI-GNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQFSGRLPSTIGHSLPN 236
+ NL + + + I P + ++ L + + T +S
Sbjct: 72 ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDI 131
Query: 237 IEYLTLAINNLIGTIPDSLTN--ASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNN 294
L + N + +IP + ++ + L L +N F+ + N L+ + + N
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK 190
Query: 295 -LTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327
LT A + + S L + +
Sbjct: 191 YLTVIDKDA-----FGGVYS--GPSLLDVSQTSV 217
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 8e-09
Identities = 26/164 (15%), Positives = 61/164 (37%), Gaps = 8/164 (4%)
Query: 403 SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPS-SLWSLEYILEINL 461
S+P L+L L ++L ++ + + + + S S ++L + I +
Sbjct: 28 SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87
Query: 462 SSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIP--STIGALVDLETLSLASNQFQGPI 518
+ + + ++L +L+ L + L P + + + L + N + I
Sbjct: 88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI 146
Query: 519 PESV--GSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQN 560
P + G +L L N F+ + + L +++N
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 9e-09
Identities = 45/303 (14%), Positives = 85/303 (28%), Gaps = 97/303 (32%)
Query: 210 STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSN 269
+ + L L +PS +LPNI + ++I+ + +
Sbjct: 31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLE----------------- 72
Query: 270 SFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGG 329
++F NL + + IR T +L L +L + + L
Sbjct: 73 ------SHSFYNLSKVTHIEIRNTRNLTYIDP-------DALKELPLLKFLGIFNTGL-- 117
Query: 330 ILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQ 389
+ + +L + N +IP +
Sbjct: 118 ----------KMFPDLTK------------VYSTDIFFILEITDNPYMTSIPVNA----- 150
Query: 390 LQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSS 449
QGL E L+L N + + + T L + L NK + I
Sbjct: 151 FQGLCNE-----------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198
Query: 450 LWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSL 509
+ + S +LD+S+ ++ +PS L L+ L
Sbjct: 199 AFG-------GVYSG---------------PSLLDVSQTSVT-ALPS--KGLEHLKELIA 233
Query: 510 ASN 512
+
Sbjct: 234 RNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 5e-08
Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 10/185 (5%)
Query: 43 RVKALNLSGMGLGGTIPPHL-GNLSFLMSLDVTLNNFYGHLPNE-LGKLGRLKFISFSFN 100
+ + +S + H NLS + +++ ++ + L +L LKF+
Sbjct: 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115
Query: 101 KLSGSIP--TWIGVLSKLQIMSLRNNNITGPIPNSLFN--LSKLEMLQASFNVIDGNIPS 156
L P T + I+ + +N IP + F ++ L+ N ++
Sbjct: 116 GLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQG 173
Query: 157 GIGNLSNLFDLDLRHNNLQDQIPTEI--GNLQNLESLALGTNNLSGLIPPAIFNISTIRV 214
N + L + L N I + G L + +++ L + ++ +
Sbjct: 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233
Query: 215 LNLHS 219
N +
Sbjct: 234 RNTWT 238
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 41/287 (14%), Positives = 80/287 (27%), Gaps = 69/287 (24%)
Query: 162 SNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQ 221
D + ++Q +IP + ++L L +L + A N+ I + + +
Sbjct: 11 HQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66
Query: 222 FSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281
+L S ++L + ++ + + I P+
Sbjct: 67 TLQQLESHSFYNLSKVTHIEIRNTRNLTYID-----------------------PDALKE 103
Query: 282 LRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSAS 341
L L L I L + + S L + NP +P F
Sbjct: 104 LPLLKFLGIFNTGLK----MFPDLTKVYSTDI---FFILEITDNPYMTSIPV--NAFQ-- 152
Query: 342 LQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLE 401
G + L L N ++ +L + L N
Sbjct: 153 -------------------GLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYL 192
Query: 402 GSIPYD--------LCHLELNGNKLSGHIPPCLASLTSLRELRLGSN 440
I D L+++ ++ +P L L+EL +
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS--KGLEHLKELIARNT 236
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 8e-14
Identities = 51/165 (30%), Positives = 67/165 (40%), Gaps = 21/165 (12%)
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS---SIPSSLWSLEYILEIN 460
IP D L+L L+ LT L L L N+L + + L L +
Sbjct: 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT---LG 89
Query: 461 LSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGA---LVDLETLSLASNQFQG 516
L++N L SLP V L L L L NQL +PS G L L+ L L +NQ Q
Sbjct: 90 LANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPS--GVFDRLTKLKELRLNTNQLQS 145
Query: 517 PIPESV-GSLISLESLDLSGNNFSGKIPK----SLEALSHLKQFN 556
IP L +L++L LS N +P L L + F
Sbjct: 146 -IPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFG 188
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 2e-12
Identities = 47/178 (26%), Positives = 69/178 (38%), Gaps = 21/178 (11%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-ISTI 212
+PSGI ++ LDL+ L L L L L N L L +F+ ++ +
Sbjct: 29 VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTEL 85
Query: 213 RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP----DSLTNASKLIGLDLGS 268
L L +NQ + LP + L ++ L L N + ++P D LT L L L +
Sbjct: 86 GTLGLANNQLA-SLPLGVFDHLTQLDKLYLG-GNQLKSLPSGVFDRLTK---LKELRLNT 140
Query: 269 NSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNP 326
N F L +L LS+ TN L + A KL + L N
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA--------FDRLGKLQTITLFGNQ 190
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 32/177 (18%)
Query: 369 LTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLAS 428
L L L + L +L L+L+ N L+ ++ +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFD-----------------D 81
Query: 429 LTSLRELRLGSNKLTS---SIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLD 484
LT L L L +N+L S + L L+ + L N L SLPS V +L L+ L
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKL---YLGGNQL-KSLPSGVFDRLTKLKELR 137
Query: 485 LSRNQLSGNIPSTIGA---LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNF 538
L+ NQL +IP+ GA L +L+TLSL++NQ Q + L L+++ L GN F
Sbjct: 138 LNTNQLQ-SIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-08
Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 13/159 (8%)
Query: 141 EMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLS 199
E L + + L+ L L+L +N LQ + + +L L +L L N L+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96
Query: 200 GLIPPAIFNIST-IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP----DS 254
L P +F+ T + L L NQ LPS + L ++ L L N + +IP D
Sbjct: 97 SL-PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDK 153
Query: 255 LTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTN 293
LTN L L L +N F L L +++ N
Sbjct: 154 LTN---LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 9e-08
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 12/159 (7%)
Query: 70 SLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGV---LSKLQIMSLRNNNI 126
LD+ L +L +++ +N+L ++ GV L++L + L NN +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSA--GVFDDLTELGTLGLANNQL 95
Query: 127 TGPIPNSLF-NLSKLEMLQASFNVIDGNIPSGI-GNLSNLFDLDLRHNNLQDQIPTEI-G 183
+P +F +L++L+ L N + +PSG+ L+ L +L L N LQ IP
Sbjct: 96 AS-LPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFD 152
Query: 184 NLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222
L NL++L+L TN L + A + ++ + L NQF
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 9e-14
Identities = 58/289 (20%), Positives = 104/289 (35%), Gaps = 30/289 (10%)
Query: 113 LSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHN 172
L+ ++ +N+T + +L + L A + G+ L+NL L+L+ N
Sbjct: 18 LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDN 73
Query: 173 NLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGH 232
+ D + NL + L L N L + I + +I+ L+L S Q + + +
Sbjct: 74 QITD--LAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD--VTPLAG 127
Query: 233 SLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRT 292
L N++ L L N I I L + L L +G+ S P NL L L
Sbjct: 128 -LSNLQVLYLD-LNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182
Query: 293 NNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKL 352
N ++ +S L + L + L +N + + P + N S +L +
Sbjct: 183 NKISD----------ISPLASLPNLIEVHLKNNQISDVSP--LANTS-NLFIVTLTNQTI 229
Query: 353 GGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLE 401
NL ++ + P ++ +L N
Sbjct: 230 TNQPVFYNNNL--VVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 55/273 (20%), Positives = 107/273 (39%), Gaps = 30/273 (10%)
Query: 62 LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121
L+ + + +N L + +S ++ +I + L+ L + L
Sbjct: 15 DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLEL 70
Query: 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTE 181
++N IT P L NL+K+ L+ S N + S I L ++ LDL + D P
Sbjct: 71 KDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP-- 124
Query: 182 IGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241
+ L NL+ L L N ++ + + ++ ++ L++ + Q S + + + L + L
Sbjct: 125 LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD--LTPLAN-LSKLTTLK 179
Query: 242 LAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSS 301
+N I I L + LI + L +N S P N +L ++++ +T +
Sbjct: 180 AD-DNKISDIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVF 235
Query: 302 ADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPL 334
+ L + P G + P
Sbjct: 236 YNN-----------NLVVPNVVKGPSGAPIAPA 257
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 5e-12
Identities = 45/261 (17%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 281 NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSA 340
L + ++ +N+T + + ++ L + I + +
Sbjct: 17 ALANAIKIAAGKSNVTD----------TVTQADLDGITTLSAFGTGVTTIEG--VQYLN- 63
Query: 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNL 400
+L + ++ + + NL + L L N L +++ LQ ++ L L +
Sbjct: 64 NLIGLELKDNQI--TDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQI 119
Query: 401 EGSIP----YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYI 456
P +L L L+ N+++ +I P LA LT+L+ L +G+ +++ + L +L +
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDL--TPLANLSKL 175
Query: 457 LEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG 516
+ N ++D S + L L + L NQ+S P + +L ++L +
Sbjct: 176 TTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231
Query: 517 PIPESVGSLISLESLDLSGNN 537
+L+ +
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGA 252
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 6e-12
Identities = 57/300 (19%), Positives = 112/300 (37%), Gaps = 29/300 (9%)
Query: 156 SGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVL 215
L+N + +N+ D + +L + +L+ ++ + + ++ + L
Sbjct: 13 FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGL 68
Query: 216 NLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHI 275
L NQ + P +L I L L+ N L ++ + LDL S +
Sbjct: 69 ELKDNQITDLAPLK---NLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD-- 121
Query: 276 PNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLI 335
L +L VL + N +T +S L L YL + + + + P +
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITN----------ISPLAGLTNLQYLSIGNAQVSDLTP--L 169
Query: 336 GNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSL 395
N S L + A + K+ S + +L LI + L N ++ P + L ++L
Sbjct: 170 ANLS-KLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
Query: 396 EDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEY 455
+ + + +L + N + G +A T S LT ++ S + ++ Y
Sbjct: 225 TNQTITNQPVFYNNNLVVP-NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSY 283
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-13
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 5/138 (3%)
Query: 404 IPYDLCHLELNGNKLSGHIPP--CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINL 461
IP L LN N+ + + L LR++ +NK+T + + EI L
Sbjct: 30 IPQYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88
Query: 462 SSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPE 520
+SN L +++ + + L+ L+ L L N+++ + L + LSL NQ P
Sbjct: 89 TSNRL-ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147
Query: 521 SVGSLISLESLDLSGNNF 538
+ +L SL +L+L N F
Sbjct: 148 AFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 20/155 (12%)
Query: 178 IPTEIGNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQFSGRLPSTIGHSLPN 236
IP I Q L L N + L IF + +R +N +N+ + +
Sbjct: 26 IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG 82
Query: 237 IEYLTLAINNLIGTIP----DSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRT 292
+ + L +N + + L + L L L SN + ++F L + +LS+
Sbjct: 83 VNEILLT-SNRLENVQHKMFKGLES---LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138
Query: 293 NNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327
N +TT + A +L LS L L +NP
Sbjct: 139 NQITTVAPGA-----FDTLH---SLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-09
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 95 ISFSFNKLSGSIPTWI-GVLSKLQIMSLRNNNITGPIPNSLFN-LSKLEMLQASFNVIDG 152
+ + N+ + T I L +L+ ++ NN IT I F S + + + N ++
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLE- 94
Query: 153 NIPSGI-GNLSNLFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIF-NI 209
N+ + L +L L LR N + + + L ++ L+L N ++ + P F +
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTL 152
Query: 210 STIRVLNLHSNQF 222
++ LNL +N F
Sbjct: 153 HSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 4e-08
Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 4/133 (3%)
Query: 141 EMLQASFNVIDGNIPSGI-GNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLS 199
L+ + N +GI L L ++ +N + D + + L +N L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 200 GLIPPAIF-NISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNA 258
+ +F + +++ L L SN+ + + + L ++ L+L N + P +
Sbjct: 95 NV-QHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 259 SKLIGLDLGSNSF 271
L L+L +N F
Sbjct: 153 HSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 362 NLRGLILLTLDFNDLNGTIPTSV-GTLQQLQGLSLEDNNLEGSIPYD-------LCHLEL 413
L L + N + I + + L N LE ++ + L L L
Sbjct: 55 KLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLML 112
Query: 414 NGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467
N+++ + L+S+R L L N++T+ P + +L + +NL +N N
Sbjct: 113 RSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 4e-12
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS---SIPSSLWSLEYILEIN 460
IP + L L+ N+++ P SL +L+EL LGSN+L + + SL L ++
Sbjct: 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT---VLD 94
Query: 461 LSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIP 519
L +N L LPS V +L L+ L + N+L+ +P I L L L+L NQ +
Sbjct: 95 LGTNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152
Query: 520 ESVGSLISLESLDLSGN 536
+ L SL L GN
Sbjct: 153 GAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 6/141 (4%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-ISTI 212
+P+GI +N L L N + P +L NL+ L LG+N L L P +F+ ++ +
Sbjct: 34 VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQL 90
Query: 213 RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFS 272
VL+L +NQ + LPS + L +++ L + N L +P + + L L L N
Sbjct: 91 TVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK 148
Query: 273 GHIPNTFGNLRHLNVLSIRTN 293
F L L + N
Sbjct: 149 SIPHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 8e-06
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 97 FSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN-LSKLEMLQASFNVIDGNIP 155
N+++ P L L+ + L +N + +P +F+ L++L +L N + +P
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLT-VLP 104
Query: 156 SGI-GNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRV 214
S + L +L +L + N L ++P I L +L LAL N L + A +S++
Sbjct: 105 SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
Query: 215 LNLHSNQ 221
L N
Sbjct: 164 AYLFGNP 170
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 70 SLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGV---LSKLQIMSLRNNNI 126
L + N P L LK + N+L ++P GV L++L ++ L N +
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPV--GVFDSLTQLTVLDLGTNQL 100
Query: 127 TGPIPNSLFN-LSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNL 185
T +P+++F+ L L+ L N + +P GI L++L L L N L+ L
Sbjct: 101 TV-LPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
Query: 186 QNLESLALGTN 196
+L L N
Sbjct: 159 SSLTHAYLFGN 169
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 17/242 (7%)
Query: 62 LGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121
+ + ++ + +L + I + + + S+ I L + + L
Sbjct: 20 DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFL 75
Query: 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTE 181
N +T I L NL L L N + ++ S + +L L L L HN + D
Sbjct: 76 NGNKLTD-IKP-LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGISDING-- 129
Query: 182 IGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241
+ +L LESL LG N ++ + + ++ + L+L NQ S +P L ++ L
Sbjct: 130 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLA---GLTKLQNLY 184
Query: 242 LAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSS 301
L+ N I + +L L L+L S N NL N + +L T
Sbjct: 185 LS-KNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242
Query: 302 AD 303
+D
Sbjct: 243 SD 244
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 53/217 (24%), Positives = 89/217 (41%), Gaps = 29/217 (13%)
Query: 113 LSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHN 172
++ +L+ ++T + + L+ ++ + A+ + I ++ GI L N+ L L N
Sbjct: 23 FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGN 78
Query: 173 NLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGH 232
L D P + NL+NL L L N + L + ++ ++ L+L N S I
Sbjct: 79 KLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGI-----SDING 129
Query: 233 --SLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSI 290
LP +E L L N + T L+ +KL L L N S I L L L +
Sbjct: 130 LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYL 185
Query: 291 RTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327
N+++ L +L + L L L S
Sbjct: 186 SKNHISD----------LRALAGLKNLDVLELFSQEC 212
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 4e-10
Identities = 66/334 (19%), Positives = 118/334 (35%), Gaps = 65/334 (19%)
Query: 241 TLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESS 300
T+ + I I S ++ I +L S + T L ++ + +++ +
Sbjct: 7 TITVPTPIKQI-FSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--- 60
Query: 301 SADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEI 360
+ + ++ L L+ N L I P +
Sbjct: 61 -------VQGIQYLPNVTKLFLNGNKLTDIKP---------------------------L 86
Query: 361 GNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY-----DLCHLELNG 415
NL+ L L LD N + +S+ L++L+ LSLE N + I L L L
Sbjct: 87 ANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGN 143
Query: 416 NKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQ 475
NK++ I L+ LT L L L N+++ L L + + LS N ++D +
Sbjct: 144 NKIT-DITV-LSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALA 197
Query: 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 535
LK L VL+L + + LV T+ L++ E + G
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS-----------LVTPEIISDDG 246
Query: 536 NNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVK 569
+ + L ++ F Q + G+ +
Sbjct: 247 DYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 280
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 8e-09
Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 26/245 (10%)
Query: 156 SGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVL 215
+ +L+ ++ D + L +++ + +++ + I + + L
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKL 73
Query: 216 NLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHI 275
L+ N+ + P +L N+ +L L N + + SL + KL L L N S I
Sbjct: 74 FLNGNKLTDIKPLA---NLKNLGWLFLD-ENKVKDL-SSLKDLKKLKSLSLEHNGIS-DI 127
Query: 276 PNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLI 335
+L L L + N +T ++ L+ KL L L+ N + I+P +
Sbjct: 128 NG-LVHLPQLESLYLGNNKITD----------ITVLSRLTKLDTLSLEDNQISDIVP--L 174
Query: 336 GNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSL 395
+ LQ+ Y + + S + + L+ L +L L + L +
Sbjct: 175 AGLT-KLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231
Query: 396 EDNNL 400
D +L
Sbjct: 232 TDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 8/135 (5%)
Query: 86 LGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQA 145
L L +L+ + NK++ + L+KL +SL +N I+ +P L L+KL+ L
Sbjct: 130 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185
Query: 146 SFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPA 205
S N I ++ + L NL L+L ++ NL ++ +L + P
Sbjct: 186 SKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEI 241
Query: 206 IFNISTIRVLNLHSN 220
I + N+ +
Sbjct: 242 ISDDGDYEKPNVKWH 256
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 16/201 (7%)
Query: 358 KEIGNLRGLI-LLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG----SIPYDLCHLE 412
++ GL + + + T S L +Q + +++N++ +L L
Sbjct: 10 NQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELH 69
Query: 413 LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPS 472
L+ N++S + P L LT L EL + N+L + L + L +N L D
Sbjct: 70 LSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLS---RLFLDNNELRD--TD 122
Query: 473 NVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLD 532
++ LK L +L + N+L +I +G L LE L L N+ + L + +D
Sbjct: 123 SLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWID 178
Query: 533 LSGNNFSGKIPKSLEALSHLK 553
L+G + K L
Sbjct: 179 LTGQKCVNEPVKYQPELYITN 199
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 16/212 (7%)
Query: 86 LGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQA 145
L + ++ + LS +Q + N+NI + + L+ L
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHL 70
Query: 146 SFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPA 205
S N I ++ S + +L+ L +L + N L++ L L L N L
Sbjct: 71 SHNQIS-DL-SPLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRDTDS-- 123
Query: 206 IFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLD 265
+ ++ + +L++ +N+ + L +E L L N I LT K+ +D
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVML---GFLSKLEVLDLH-GNEITNT-GGLTRLKKVNWID 178
Query: 266 LGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTT 297
L L N + +
Sbjct: 179 LTGQKCVNEPVKYQPELYITNTVKDPDGRWIS 210
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 13/151 (8%)
Query: 413 LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPS 472
++ P L + + LG +T S L + N ++++ +
Sbjct: 4 QRPTPINQVFP--DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LA 57
Query: 473 NVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLD 532
+Q L+ L LS NQ+S ++ S + L LE LS+ N+ + + L L
Sbjct: 58 GMQFFTNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLF 112
Query: 533 LSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
L N SL L +L+ ++ N L+
Sbjct: 113 LDNNELRD--TDSLIHLKNLEILSIRNNKLK 141
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 35/253 (13%), Positives = 80/253 (31%), Gaps = 29/253 (11%)
Query: 245 NNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQ 304
I + + + +LG S + + + L + + +N+ +
Sbjct: 6 PTPINQV-FPDPGLANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQS------- 55
Query: 305 WSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLR 364
L+ + L L L N + + P + + + L+ +L K + +
Sbjct: 56 ---LAGMQFFTNLKELHLSHNQISDLSP--LKDLT-KLEELSVNRNRL-----KNLNGIP 104
Query: 365 GLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD----LCHLELNGNKLSG 420
L L ++ S+ L+ L+ LS+ +N L+ + L L+L+GN+++
Sbjct: 105 SACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT- 163
Query: 421 HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVL 480
+ L L + + L K + E + + P +
Sbjct: 164 NTGG-LTRLKKVNWIDLTGQKCVNEPVKYQ--PELYITNTVKDPDGRWISPYYISNGGSY 220
Query: 481 RVLDLSRNQLSGN 493
+
Sbjct: 221 VDGCVLWELPVYT 233
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 26/174 (14%)
Query: 156 SGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVL 215
L+N +L ++ D + L +++ +N+ L + + ++ L
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKEL 68
Query: 216 NLHSNQFSGRLPSTIG--HSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSG 273
+L NQ S + L +E L++ N + + + ++ L L L +N
Sbjct: 69 HLSHNQI-----SDLSPLKDLTKLEELSVN-RNRLKNL--NGIPSACLSRLFLDNNELRD 120
Query: 274 HIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327
++ +L++L +LSIR N L + + L KL L L N +
Sbjct: 121 --TDSLIHLKNLEILSIRNNKLKS----------IVMLGFLSKLEVLDLHGNEI 162
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 6e-11
Identities = 49/157 (31%), Positives = 71/157 (45%), Gaps = 12/157 (7%)
Query: 387 LQQLQGLSLEDNNLEGSIPYD----LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKL 442
L + + +++++ + +L L GNKL L LT+L L L N+L
Sbjct: 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQL 97
Query: 443 TSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTI-GA 500
S L + E+ L N L SLP V KL L L+L+ NQL ++P +
Sbjct: 98 QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDK 155
Query: 501 LVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGN 536
L +L L L+ NQ Q +PE V L L+ L L N
Sbjct: 156 LTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQN 191
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 5e-08
Identities = 56/179 (31%), Positives = 76/179 (42%), Gaps = 29/179 (16%)
Query: 157 GIGNLSNLFDLDLRHNNLQDQIPTEIG---NLQNLESLALGTNNLSGLIPPAIFN-ISTI 212
GI L N+ L L N L +I L NL L L N L L P +F+ ++ +
Sbjct: 58 GIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNL 111
Query: 213 RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP----DSLTNASKLIGLDLGS 268
+ L L NQ LP + L N+ YL LA +N + ++P D LTN L LDL
Sbjct: 112 KELVLVENQLQ-SLPDGVFDKLTNLTYLNLA-HNQLQSLPKGVFDKLTN---LTELDLSY 166
Query: 269 NSFSGHIPN-TFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNP 326
N +P F L L L + N L + + L+SL Y+ L NP
Sbjct: 167 NQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGV--FDRLTSLQ------YIWLHDNP 216
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 24/142 (16%)
Query: 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQ 489
+ L +T ++ + L I +I +++ + S+ +Q L +R L L N+
Sbjct: 19 AETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNK 74
Query: 490 LSGNIPSTIGA---LVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNFSGKIPKS 545
L I A L +L L L NQ Q +P V L +L+ L L N +S
Sbjct: 75 LH-----DISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQL-----QS 123
Query: 546 LEA-----LSHLKQFNVSQNML 562
L L++L N++ N L
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQL 145
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 43/156 (27%), Positives = 58/156 (37%), Gaps = 40/156 (25%)
Query: 369 LTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY-------DLCHLELNGNKLSGH 421
L L N L L L+ L L +N L+ S+P +L +L L N+L
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSL 148
Query: 422 IPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVL 480
LT+L EL L N+L SLP V KL L
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQ-------------------------SLPEGVFDKLTQL 183
Query: 481 RVLDLSRNQLSGNIPSTIGA---LVDLETLSLASNQ 513
+ L L +NQL ++P G L L+ + L N
Sbjct: 184 KDLRLYQNQLK-SVPD--GVFDRLTSLQYIWLHDNP 216
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 50/138 (36%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463
IP +L+L N L LTSL +L LG NKL S L + +NLS+
Sbjct: 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85
Query: 464 NSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGA---LVDLETLSLASNQFQGPIP 519
N L SLP+ V KL L+ L L+ NQL ++P G L L+ L L NQ + +P
Sbjct: 86 NQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPD--GVFDKLTQLKDLRLYQNQLKS-VP 140
Query: 520 ESV-GSLISLESLDLSGN 536
+ V L SL+ + L N
Sbjct: 141 DGVFDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-07
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-ISTI 212
+P+GI + LDL N+L+ L +L L LG N L L P +FN ++++
Sbjct: 22 VPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSL 78
Query: 213 RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP----DSLTNASKLIGLDLGS 268
LNL +NQ LP+ + L ++ L L N L ++P D LT L L L
Sbjct: 79 TYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQ---LKDLRLYQ 133
Query: 269 NSFSGHIPN-TFGNLRHLNVLSIRTN 293
N +P+ F L L + + N
Sbjct: 134 NQLKS-VPDGVFDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 8e-06
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 178 IPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNI 237
+PT I L L TN+L L ++++ L L N+ LP+ + + L ++
Sbjct: 22 VPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78
Query: 238 EYLTLAINNLIGTIP----DSLTNASKLIGLDLGSNSFSGHIPN-TFGNLRHLNVLSIRT 292
YL L+ N L ++P D LT +L L L +N +P+ F L L L +
Sbjct: 79 TYLNLSTNQL-QSLPNGVFDKLT---QLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQ 133
Query: 293 NNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNP 326
N L + + L+SL Y+ L NP
Sbjct: 134 NQLKSVPDGV--FDRLTSLQ------YIWLHDNP 159
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 141 EMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSG 200
L N + L++L L L N LQ L +L L L TN L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 201 LIPPAIFNIST-IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP----DSL 255
L P +F+ T ++ L L++NQ LP + L ++ L L N L ++P D L
Sbjct: 91 L-PNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRL 147
Query: 256 TN 257
T+
Sbjct: 148 TS 149
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 2e-10
Identities = 80/491 (16%), Positives = 150/491 (30%), Gaps = 130/491 (26%)
Query: 114 SKLQIMSLRNNNITGPIPNSLF--NLSK-------LEMLQASFNVIDGNIPSGIGNLSNL 164
+ + + + + + +F NL LEMLQ ID N S + SN
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN- 222
Query: 165 FDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224
+ LR +++Q + L+ L N L L+ + N NL
Sbjct: 223 --IKLRIHSIQAE-------LRRLLKSKPYENCL--LVLLNVQNAKAWNAFNLSC----- 266
Query: 225 RLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRH 284
++ L+ T +T+ + ++ H T
Sbjct: 267 KI--------------------LLTTRFKQVTDF---LSAATTTHISLDHHSMTL----- 298
Query: 285 LNVLSIRTNNLTTESSSADQWSFLSSLTNCR--KLSYLVLDSNPLGGILPPLIGNFSASL 342
T S L +CR L VL +NP + + S+
Sbjct: 299 ------------TPDEVK---SLLLKYLDCRPQDLPREVLTTNPR------RLSIIAESI 337
Query: 343 QSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTL------QQLQGLSL- 395
+ N + ++ + L I +S+ L + LS+
Sbjct: 338 RDG-----------LATWDNWK-----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 396 -EDNNLEGSIPYDLCHLE-LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSL 453
+ IP L L + + + + + L + + T SIPS L
Sbjct: 382 PPSAH----IPTIL--LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--L 433
Query: 454 EYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIG----ALVDLETLSL 509
E +++ + +L+ S+ + K DL L S IG + E ++L
Sbjct: 434 ELKVKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 510 ASNQFQ------------GPIPESVGSLIS-LESLDLSGNNFSGKIPKSLEALSHLKQF- 555
F + GS+++ L+ L PK ++ + F
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 556 -NVSQNMLEGE 565
+ +N++ +
Sbjct: 553 PKIEENLICSK 563
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 8e-09
Identities = 64/389 (16%), Positives = 123/389 (31%), Gaps = 75/389 (19%)
Query: 209 ISTIRVLNLHSNQFSGRLPSTIGHSL---PNIEYLTLAINNLIGTIPDSLTNASKLIGLD 265
+I +L + + ++ L +++ + L+ N IGT A++ + +
Sbjct: 3 RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLS-GNTIGT------EAARWLSEN 55
Query: 266 LGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSN 325
+ S +L I T + E A + L +L C KL + L N
Sbjct: 56 IASKK----------DLEIAEFSDIFTGRVKDEIPEALR-LLLQALLKCPKLHTVRLSDN 104
Query: 326 PLGGILPPLIGNF---SASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPT 382
G + +F L+ Y + LG +I R L L ++ N
Sbjct: 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--RALQELAVNKKAKNAP--- 159
Query: 383 SVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKL 442
L+ + N L N S L +++ N +
Sbjct: 160 ------PLRSIICGRNRL--------------ENGSMKEWAKTFQSHRLLHTVKMVQNGI 199
Query: 443 TSS-----IPSSLWSLEYILEINLSSNSLND----SLPSNVQKLKVLRVLDLSRNQLSGN 493
+ L + + ++L N+ +L ++ LR L L+ LS
Sbjct: 200 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259
Query: 494 IPSTIG-ALVD-----LETLSLASNQFQGP----IPESVGS-LISLESLDLSGNNFS--- 539
+ + A L+TL L N+ + + + + L L+L+GN FS
Sbjct: 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319
Query: 540 ---GKIPKSLEALSHLKQFNVSQNMLEGE 565
+I + + + +
Sbjct: 320 DVVDEIREVFSTRGRGELDELDDMEELTD 348
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 53/366 (14%), Positives = 110/366 (30%), Gaps = 82/366 (22%)
Query: 158 IGNLSNLFDLDLRHNNLQDQ----IPTEIGNLQNLESLALGTNNLSG----LIPPAIFNI 209
+ S + L+ + + + + + +++ + L N + + I +
Sbjct: 1 MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 210 STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSN 269
+ + F+GR+ I +L + +L KL + L N
Sbjct: 60 KDLEIAEFSDI-FTGRVKDEIPEAL--------------RLLLQALLKCPKLHTVRLSDN 104
Query: 270 SFSG----HIPNTFGNLRHLNVLSIRTNNLTTESSSA-----DQWSFLSSLTNCRKLSYL 320
+F + + L L + N L ++ + + + N L +
Sbjct: 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164
Query: 321 VLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTI 380
+ N + N S K + R L + + N +
Sbjct: 165 ICGRN--------RLENGSMK-------------EWAKTFQSHRLLHTVKMVQNGI---- 199
Query: 381 PTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG----HIPPCLASLTSLRELR 436
G L L+ L+L N + + L S +LREL
Sbjct: 200 -RPEGIEHLLLEGLAYCQELK--------VLDLQDNTFTHLGSSALAIALKSWPNLRELG 250
Query: 437 LGSNKLTS----SIPSSLWSLE--YILEINLSSNSLNDS-----LPSNVQKLKVLRVLDL 485
L L++ ++ + LE + + L N + +K+ L L+L
Sbjct: 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310
Query: 486 SRNQLS 491
+ N+ S
Sbjct: 311 NGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 34/264 (12%), Positives = 74/264 (28%), Gaps = 49/264 (18%)
Query: 110 IGVLSKLQIMSLRNNNITGP----IPNSLFNLSKLEMLQASFNVID----------GNIP 155
+ ++ + L N I + ++ + LE+ + S +
Sbjct: 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87
Query: 156 SGIGNLSNLFDLDLRHNNLQDQIPTEIGNL----QNLESLALGTNNLS------------ 199
+ L + L N + + LE L L N L
Sbjct: 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147
Query: 200 -GLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSL---PNIEYLTLAINNL-----IGT 250
+ N +R + N+ + + + + N +
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207
Query: 251 IPDSLTNASKLIGLDLGSNSFSG----HIPNTFGNLRHLNVLSIRTNNLTTESSSADQWS 306
+ + L +L LDL N+F+ + + +L L + L+ ++A
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA---- 263
Query: 307 FLSSLTNC--RKLSYLVLDSNPLG 328
+ + + L L L N +
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNEIE 287
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 7e-08
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 34/138 (24%)
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463
IP LEL NKL LT L +L L N++
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-------------------- 65
Query: 464 NSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGA---LVDLETLSLASNQFQGPIP 519
SLP V KL L +L L N+L ++P+ G L L+ L+L +NQ + +P
Sbjct: 66 -----SLPDGVFDKLTKLTILYLHENKLQ-SLPN--GVFDKLTQLKELALDTNQLKS-VP 116
Query: 520 ESV-GSLISLESLDLSGN 536
+ + L SL+ + L N
Sbjct: 117 DGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN-ISTI 212
+P+GI S+ L+L N LQ L L L+L N + L P +F+ ++ +
Sbjct: 22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKL 78
Query: 213 RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPD-SLTNASKLIGLDLGSN 269
+L LH N+ LP+ + L ++ L L N L ++PD + L + L +N
Sbjct: 79 TILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 134
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 426 LASLTSLRELRLGSNKLTS--SIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVL 483
+ REL L K+ ++ ++L + I+ S N + L+ L+ L
Sbjct: 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFD---AIDFSDNEIRKL--DGFPLLRRLKTL 69
Query: 484 DLSRNQLSGNIPSTIGALVDLETLSLASNQFQGP-IPESVGSLISLESLDLSGN 536
++ N++ AL DL L L +N + + SL SL L + N
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 11/120 (9%)
Query: 208 NISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLG 267
N R L+L + + +G +L + + + +N I + D +L L +
Sbjct: 17 NAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFS-DNEIRKL-DGFPLLRRLKTLLVN 72
Query: 268 SNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327
+N L L L + N+L + L L + + L+YL + NP+
Sbjct: 73 NNRICRIGEGLDQALPDLTELILTNNSL-------VELGDLDPLASLKSLTYLCILRNPV 125
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 14/123 (11%)
Query: 435 LRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS--G 492
++L + + + + + E++L + + + L +D S N++
Sbjct: 2 VKLTAELIEQA--AQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLD 58
Query: 493 NIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHL 552
P L L+TL + +N+ +L L L L+ N+ L L L
Sbjct: 59 GFPL----LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-----ELGDLDPL 109
Query: 553 KQF 555
Sbjct: 110 ASL 112
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 8/132 (6%)
Query: 113 LSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHN 172
+ + + LR I I N L + + + S N I G L L L + +N
Sbjct: 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNN 74
Query: 173 NLQDQIPTEIGNLQNLESLALGTNNLSGL-IPPAIFNISTIRVLNLHSNQFSGRLP---S 228
+ L +L L L N+L L + ++ ++ L + N +
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRL 133
Query: 229 TIGHSLPNIEYL 240
+ + +P + L
Sbjct: 134 YVIYKVPQVRVL 145
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 9e-05
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 460 NLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIP 519
L++ + + + R LDL ++ I + L + + + N+ + +
Sbjct: 3 KLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL- 57
Query: 520 ESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563
+ L L++L ++ N +AL L + ++ N L
Sbjct: 58 DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 1e-07
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
Query: 439 SNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPST 497
+ L E + E+ + + L + L LR L + ++ L P
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 498 IGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNF 538
L L+L+ N + + +SL+ L LSGN
Sbjct: 76 FHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 2e-07
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 463 SNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPS-TIGALVDLETLSLASNQFQGPIPES 521
+ ++ + L L + Q ++ + L +L L++ + + P++
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 522 VGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNML 562
L L+LS N K+++ LS L++ +S N L
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 5e-07
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 416 NKLSGHIPPCLASLTSLRELRLGSNKLTSSIPS-SLWSLEYILEINLSSNSLNDSLPSNV 474
+ L +L EL + + + + L L + + + + L + +
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDA 75
Query: 475 -QKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQ 515
L L+LS N L T+ L L+ L L+ N
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 6e-07
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 233 SLPNIEYLTLAINNLIGTIPD-SLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIR 291
N+ L + + + L +L L + + P+ F L+ L++
Sbjct: 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88
Query: 292 TNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327
N L + W + L+ L LVL NPL
Sbjct: 89 FNALESL-----SWKTVQGLS----LQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 2e-06
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 3/95 (3%)
Query: 178 IPTEIGNLQNLESLALGTNNLSGLIPPAIF-NISTIRVLNLHSNQFSGRLPSTIGHSLPN 236
+ +NL L + + + +R L + + + H P
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81
Query: 237 IEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSF 271
+ L L+ N + ++ L L L N
Sbjct: 82 LSRLNLS-FNALESLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 3e-06
Identities = 15/124 (12%), Positives = 29/124 (23%), Gaps = 26/124 (20%)
Query: 100 NKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIG 159
+ + L + + N +
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDL-----------------------R 53
Query: 160 NLSNLFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLH 218
L L +L + + L+ + + L L L N L L +++ L L
Sbjct: 54 GLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLSLQELVLS 111
Query: 219 SNQF 222
N
Sbjct: 112 GNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 5e-06
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 407 DLCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNS 465
+L L + + H+ L L LR L + + L P + + +NLS N+
Sbjct: 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91
Query: 466 LNDSLPSNVQKLKVLRVLDLSRNQL 490
L SL + L+ L LS N L
Sbjct: 92 LE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 10/102 (9%)
Query: 374 NDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD-------LCHLELNGNKLSGHIPP-C 425
D + + L L +E+ + L +L + + L + P
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA 75
Query: 426 LASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467
L L L N L S+ + E+ LS N L+
Sbjct: 76 FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 9/97 (9%)
Query: 244 INNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPN-TFGNLRHLNVLSIRTNNLTTESSSA 302
+ L A L L + + H+ L L L+I + L + A
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 303 DQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFS 339
+LS L L N L + + S
Sbjct: 76 --------FHFTPRLSRLNLSFNALESLSWKTVQGLS 104
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 428 SLTSLRELRLGSNKLTS-SIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLS 486
+ + ++EL L +++ + E + ++ + L +N+ KL L+ L+LS
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72
Query: 487 RNQLSGNIPSTIGALVDLETLSLASNQFQGP-IPESVGSLISLESLDLSGN 536
N++SG + +L L+L+ N+ + E + L +L+SLDL
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 5e-06
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 452 SLEYILEINLSSNSLND-SLPSNVQKLKVLRVLDLSRNQLS--GNIPSTIGALVDLETLS 508
+ + E+ L ++ N+ L + + L L L+ N+P L L+ L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK----LNKLKKLE 70
Query: 509 LASNQFQGPIPESVGSLISLESLDLSGNNFSG-KIPKSLEALSHLKQFNVSQN 560
L+ N+ G + +L L+LSGN + L+ L +LK ++
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 7e-05
Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 8/133 (6%)
Query: 113 LSKLQIMSLRNNNIT-GPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRH 171
S ++ + L N+ G + +LE L + +I + + L+ L L+L
Sbjct: 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSD 73
Query: 172 NNLQDQIPTEIGNLQNLESLALGTNNLSGL-IPPAIFNISTIRVLNLHSNQFSGRLP--- 227
N + + NL L L N + L + + ++ L+L + + + L
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYR 132
Query: 228 STIGHSLPNIEYL 240
+ LP + YL
Sbjct: 133 ENVFKLLPQLTYL 145
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 369 LTLDFNDLN-GTIPTSVGTLQQLQGLSLEDNNLE--GSIPY--DLCHLELNGNKLSGHIP 423
L LD + N G + ++L+ LS + L ++P L LEL+ N++SG +
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLE 81
Query: 424 PCLASLTSLRELRLGSNKLTS-SIPSSLWSLEYILEINLSSN---SLNDSLPSNVQKLKV 479
+L L L NK+ S L LE + ++L + +LND + + L
Sbjct: 82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141
Query: 480 LRVLD 484
L LD
Sbjct: 142 LTYLD 146
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 3e-07
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
Query: 395 LEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLE 454
E+ + + L + + L++L + + L L +N + I SSL +E
Sbjct: 14 FEERKSVVATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-I-SSLSGME 70
Query: 455 YILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQF 514
+ ++L N + + + L L +S NQ++ ++ S I LV+L L +++N+
Sbjct: 71 NLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKI 127
Query: 515 QGPIP-ESVGSLISLESLDLSGN 536
+ + +L LE L L+GN
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 5e-07
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 7/142 (4%)
Query: 434 ELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGN 493
EL + + ++L +L+ + LS+N++ S++ ++ LR+L L RN +
Sbjct: 29 ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-K 84
Query: 494 IPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG-KIPKSLEALSHL 552
I + LE L ++ NQ + L++L L +S N + L AL L
Sbjct: 85 IENLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142
Query: 553 KQFNVSQNMLEGEIPVKGSFKN 574
+ ++ N L + +
Sbjct: 143 EDLLLAGNPLYNDYKENNATSE 164
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 81 HLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKL 140
+ L L K ++ S N + I + + + L+I+SL N I I N L
Sbjct: 39 KMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIKK-IENLDAVADTL 95
Query: 141 EMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESL 191
E L S+N I ++ SGI L NL L + +N + + EI L L+ L
Sbjct: 96 EELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKL 142
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 38/162 (23%)
Query: 166 DLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGR 225
+L ++ + + L+ + LAL TNN I I L+
Sbjct: 29 ELHGMIPPIEK-MDATLSTLKACKHLALSTNN-----------IEKISSLS--------- 67
Query: 226 LPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHL 285
+ N+ L+L NLI I + A L L + N + + L +L
Sbjct: 68 -------GMENLRILSLG-RNLIKKIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNL 117
Query: 286 NVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327
VL + N +T W + L KL L+L NPL
Sbjct: 118 RVLYMSNNKITN-------WGEIDKLAALDKLEDLLLAGNPL 152
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-07
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Query: 439 SNKLTS---SIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIP 495
+ L IP + L L N +P + K L ++DLS N++S
Sbjct: 19 NKGLKVLPKGIPRDVTELY------LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSN 71
Query: 496 STIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNFSGKIPK----SLEALS 550
+ + L TL L+ N+ + IP L SL L L GN+ S +P+ L ALS
Sbjct: 72 QSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALS 129
Query: 551 HL 552
HL
Sbjct: 130 HL 131
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIF-NISTI 212
+P GI ++ +L L N +P E+ N ++L + L N +S L F N++ +
Sbjct: 25 LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQL 80
Query: 213 RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPD-SLTNASKLIGLDLGSN 269
L L N+ +P L ++ L+L N++ +P+ + + S L L +G+N
Sbjct: 81 LTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 99 FNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLF-NLSKLEMLQASFNVIDGNIPSG 157
N+ + +P + L ++ L NN I+ + N F N+++L L S+N + IP
Sbjct: 40 GNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL-RCIPPR 96
Query: 158 I-GNLSNLFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTN 196
L +L L L N++ +P +L L LA+G N
Sbjct: 97 TFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 33/145 (22%), Positives = 51/145 (35%), Gaps = 45/145 (31%)
Query: 380 IPTSVGTLQQLQGLSLEDNNLEGSIP------YDLCHLELNGNKLSGHIPPCLASLTSLR 433
IP V L L+ N +P L ++L+ N++S +++T L
Sbjct: 29 IPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 434 ELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSG 492
L L N+L +P LK LR+L L N +S
Sbjct: 82 TLILSYNRLR-------------------------CIPPRTFDGLKSLRLLSLHGNDIS- 115
Query: 493 NIPSTIGA---LVDLETLSLASNQF 514
+P GA L L L++ +N
Sbjct: 116 VVPE--GAFNDLSALSHLAIGANPL 138
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-07
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 428 SLTSLRELRLGSNKLT-SSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLS 486
+ ++REL L + K I + ++L + L SN+ KL L+ L+LS
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79
Query: 487 RNQLSGNIPSTIGALVDLETLSLASNQFQGP-IPESVGSLISLESLDLSGN 536
N++ G + L +L L+L+ N+ + E + L L+SLDL
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 452 SLEYILEINLSSNSLND-SLPSNVQKLKVLRVLDLSRNQLS--GNIPSTIGALVDLETLS 508
+ + E+ L + ND + + L L L L N+P L L+ L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK----LPKLKKLE 77
Query: 509 LASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQ 554
L+ N+ G + L +L L+LSGN +LE L L+
Sbjct: 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLEC 121
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 37/130 (28%), Positives = 51/130 (39%), Gaps = 9/130 (6%)
Query: 369 LTLDFNDLN-GTIPTSVGTLQQLQGLSLEDNNLEG----SIPYDLCHLELNGNKLSGHIP 423
L LD N G I L+ LSL + L L LEL+ N++ G +
Sbjct: 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLD 88
Query: 424 PCLASLTSLRELRLGSNKLTS-SIPSSLWSLEYILEINLSSN---SLNDSLPSNVQKLKV 479
L +L L L NKL S L LE + ++L + +LND S + L
Sbjct: 89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148
Query: 480 LRVLDLSRNQ 489
L LD +
Sbjct: 149 LTYLDGYDRE 158
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 8/133 (6%)
Query: 113 LSKLQIMSLRNNNIT-GPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRH 171
+ ++ + L N G I LE L + S + L L L+L
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSE 80
Query: 172 NNLQDQIPTEIGNLQNLESLALGTNNLSGL-IPPAIFNISTIRVLNLHSNQFSGRLP--- 227
N + + L NL L L N L + + + ++ L+L + + + L
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYR 139
Query: 228 STIGHSLPNIEYL 240
++ LP + YL
Sbjct: 140 ESVFKLLPQLTYL 152
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 49.6 bits (117), Expect = 2e-06
Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 15/161 (9%)
Query: 420 GHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEY--ILEINLSSNSLNDSLPSNVQKL 477
+ P L ++ L L++ S +L+ I+ L + + D L S++ L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221
Query: 478 KVLRVLDLSRNQLSGNIPSTIGALVD------LETLSLASNQFQGPIPESVGS---LISL 528
+ L + + + L L+ L + + Q + E L L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281
Query: 529 ESLDLSGNNFSGK----IPKSLEALSHLKQFNVSQNMLEGE 565
E++D+S + + + ++ + HLK N+ N L E
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 1e-05
Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 18/142 (12%)
Query: 113 LSKLQIMSLRNNNITGPIPNSLF-----NLSKLEMLQASFNVIDGNIPSGI------GNL 161
L+ + + + + + + NL KL + + +
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251
Query: 162 SNLFDLDLRHNNLQDQIPTEIGN---LQNLESLALGTNNLSG----LIPPAIFNISTIRV 214
NL L + Q+ + L LE++ + L+ L+ + I ++
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311
Query: 215 LNLHSNQFSGRLPSTIGHSLPN 236
+N+ N S + + SLP
Sbjct: 312 INMKYNYLSDEMKKELQKSLPM 333
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 2e-05
Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 20/142 (14%)
Query: 426 LASLTSLRELRLGSNKLTSSIP-----SSLWSLEYILEINL-SSNSLNDSLPSNV----- 474
+L+ L + S L S+ S L +LE L + + + D +
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEK-LVLYVGVEDYGFDGDMNVFRPLFS 247
Query: 475 -QKLKVLRVLDLSRNQLSGNIPSTIGA---LVDLETLSLASNQFQG----PIPESVGSLI 526
+ L+ L + + + L LET+ +++ + + V +
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK 307
Query: 527 SLESLDLSGNNFSGKIPKSLEA 548
L+ +++ N S ++ K L+
Sbjct: 308 HLKFINMKYNYLSDEMKKELQK 329
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 44.2 bits (103), Expect = 7e-05
Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 24/171 (14%)
Query: 331 LPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390
L P++ L + K NL+ L +++ D + L L
Sbjct: 164 LSPVLDAMP-LLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPD-SVVEDILGSDLPNL 221
Query: 391 QGLSL---EDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIP 447
+ L L ++ L +L+ L + + + +
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKD------------RFPNLKWLGIVDAEEQNVVV 269
Query: 448 SSLWS---LEYILEINLSSNSLNDS----LPSNVQKLKVLRVLDLSRNQLS 491
L + +++S+ L D L +V K+K L+ +++ N LS
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 20/131 (15%)
Query: 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP----DSLTN 257
IP I L L+ N+ + LP++ L L N + I + ++
Sbjct: 23 IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASH 79
Query: 258 ASKLIGLDLGSNSFSGHIPN-TFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRK 316
+ L LG N I N F L L L++ N ++ + +
Sbjct: 80 ---IQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGS--------FEHLNS 127
Query: 317 LSYLVLDSNPL 327
L+ L L SNP
Sbjct: 128 LTSLNLASNPF 138
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 439 SNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPST 497
+ + IP + + E+ L+ N L + +L L L+L RNQL+G P+
Sbjct: 16 TGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73
Query: 498 IGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGNNFSGKIPK----SLEALSHL 552
++ L L N+ + I + L L++L+L N S + L +L+ L
Sbjct: 74 FEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSL 131
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 49/148 (33%)
Query: 380 IPTSVGTLQQLQGLSLEDNNLEGSIPYD--------LCHLELNGNKLSGHIPPCL-ASLT 430
IP L L DN L I D L LEL N+L+G I P +
Sbjct: 27 IPLHT------TELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGAS 78
Query: 431 SLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQ 489
++EL+LG NK+ + + + L L+ L+L NQ
Sbjct: 79 HIQELQLGENKIK-------------------------EISNKMFLGLHQLKTLNLYDNQ 113
Query: 490 LSGNIPSTIGA---LVDLETLSLASNQF 514
+S + G+ L L +L+LASN F
Sbjct: 114 IS-CVMP--GSFEHLNSLTSLNLASNPF 138
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 14/124 (11%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSGLIPPAIF-NIST 211
IP I + +L L N L + G L +L L L N L+G+ P F S
Sbjct: 23 IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASH 79
Query: 212 IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP----DSLTNASKLIGLDLG 267
I+ L L N+ + + + L ++ L L N + + + L L L+L
Sbjct: 80 IQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLN---SLTSLNLA 134
Query: 268 SNSF 271
SN F
Sbjct: 135 SNPF 138
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 25/194 (12%)
Query: 388 QQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLT---- 443
++L L + + + H E + S L+SLR+L L ++T
Sbjct: 36 KKLGKLGRQVLPPSELLDHLFFHYEFQNQRFS------AEVLSSLRQLNLAGVRMTPVKC 89
Query: 444 SSIPSSLWSLEYIL-EINLSSNSLND-SLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGAL 501
+ + + L S + L E+NL+S L+ L + + R L L N L + L
Sbjct: 90 TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149
Query: 502 -----VDLETLSLASNQFQGP----IPESVGSLISLESLDLSGNNFSGK----IPKSLEA 548
+ TL L++N + E + S+ L L + + L+
Sbjct: 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209
Query: 549 LSHLKQFNVSQNML 562
L++ NV+ N
Sbjct: 210 NRQLQELNVAYNGA 223
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 72/457 (15%), Positives = 147/457 (32%), Gaps = 57/457 (12%)
Query: 113 LSKLQIMSLRNNNITGP-------IPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLF 165
L+ + LR +++ P++ +L L + + V + + NL
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214
Query: 166 DLDLRHNNLQDQIPTEIGNLQNLESLALG------TNNLSGLIPPAIFNISTIRVLNLHS 219
L L +++ T + LE L G ++ + A+ +R L+
Sbjct: 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274
Query: 220 NQFSGRLPSTIGHSLPNIEYLTLAINNLIGT-IPDSLTNASKLIGLDL----GSNSFSGH 274
+ LP+ + + L L+ + + L KL L +
Sbjct: 275 DAVPAYLPA-VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE-V 332
Query: 275 IPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPL 334
+ +T +LR L V + + +Q +S C KL ++ +
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVSMGCPKLESVLYFCRQMT------ 385
Query: 335 IGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGT---IPTSVGTLQQLQ 391
+A+L + + L + D+ L V + L+
Sbjct: 386 ----NAALITIARNRPNM------TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435
Query: 392 GLSLE----DNNLE--GSIPYDLCHLELNGNKLSGHIPPCLA-SLTSLRELRL-GSNKLT 443
LSL D E G+ + L + S + SLR+L +
Sbjct: 436 RLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495
Query: 444 SSIPSSLWSLEYILEINLSSNSLND-SLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALV 502
++ ++ LE + + +SS S++ + QK+ L V + + P +
Sbjct: 496 KALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVER 555
Query: 503 DLETLSLASNQFQGP---IPESVGSLISLESLDLSGN 536
++A GP +P V ++ ++ S
Sbjct: 556 VFIYRTVA-----GPRFDMPGFVWNMDQDSTMRFSRQ 587
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 80/470 (17%), Positives = 148/470 (31%), Gaps = 53/470 (11%)
Query: 120 SLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIP 179
+LR+ + G ++FNL + + NL L + R + D
Sbjct: 74 NLRSLKLKGKPRAAMFNLIPEN----WGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDL 129
Query: 180 TEI--GNLQNLESLALGTNNLSGLIPPAIFNIST----IRVLNLHSNQF---SGRLPSTI 230
+ +LE+L L + SG + +I T I+ L + + F G+ +
Sbjct: 130 DRLAKARADDLETLKL--DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187
Query: 231 GHSLPNIEYLTLAINNLIGTIPDSLT----NASKLIGLDLGSNSFSGH--IPNTFGNLRH 284
++E L + P L N L+ + +G NL
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEE 247
Query: 285 LNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQS 344
S+ + E +L RKL L L + P++ F+A ++
Sbjct: 248 FCGGSLNEDIGMPEK--------YMNLVFPRKLCRLGLSYMGPNEM--PILFPFAAQIRK 297
Query: 345 FYAYECKL-GGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGS 403
L I L +L + + +QL+ L +E E
Sbjct: 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQG 357
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLT----SSIPSSLWSLEYILEI 459
+ + + G L + + + +T SI + L +L +
Sbjct: 358 MEDEEGLVSQRGLIALAQ------GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411
Query: 460 NLSSNS------LNDSLPSNVQKLKVLRVLDLSRN--QLSGNIPSTIGAL-VDLETLSLA 510
L L++ + S + K LR L+ S IG ++ + L
Sbjct: 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471
Query: 511 SNQFQGP-IPESVGSLISLESLDLSGNNFSGK-IPKSLEALSHLKQFNVS 558
+ E +L+ L++ G FS + I ++ L L+ V
Sbjct: 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 8e-04
Identities = 62/452 (13%), Positives = 132/452 (29%), Gaps = 61/452 (13%)
Query: 91 RLKFISFSFNKLSGSIPTWIGVLSK----LQIMSLRNNNIT--GPIPNSLFNLSKLEMLQ 144
R + G + W+ +S L+ + R ++ + LE L+
Sbjct: 85 RAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144
Query: 145 ASF--NVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIG----NLQNLESLALGTNNL 198
+ S + + + L + ++ ++ + + +LE L
Sbjct: 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF 204
Query: 199 SGLIPPAIFNIST----IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDS 254
+ + P + I+ + + + + + N+E N +P+
Sbjct: 205 AKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEK 262
Query: 255 LTNASKLIGLDLGSNSFSG--HIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLT 312
N L S+ G +P F + L + L TE + +
Sbjct: 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED-------HCTLIQ 315
Query: 313 NCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNL--RGLI--- 367
C L L N +G ++ + L+ + E G + RGLI
Sbjct: 316 KCPNLEVLET-RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374
Query: 368 -----LLTLDFNDLNGT------IPTSVGTLQQLQGLSLEDNNLEGSIPYD--------- 407
L + + T I T + L + + L+ +P D
Sbjct: 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG 434
Query: 408 ---LCHLELNGN--KLSGHIPPCLASL-TSLRELRLGSNKLT-SSIPSSLWSLEYILEIN 460
L L+ + ++R + LG + + + ++
Sbjct: 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494
Query: 461 LSSNSL-NDSLPSNVQKLKVLRVLDLSRNQLS 491
+ ++ + V KL LR L + + S
Sbjct: 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 32/113 (28%)
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463
IP D L LN N+++ P L +L++L SNKLT
Sbjct: 31 IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-------------------- 70
Query: 464 NSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGA---LVDLETLSLASN 512
++P+ V KL L LDL+ N L +IP GA L L + L +N
Sbjct: 71 -----AIPTGVFDKLTQLTQLDLNDNHLK-SIPR--GAFDNLKSLTHIYLYNN 115
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 32/113 (28%)
Query: 404 IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463
IP L L N+++ P LT L L L +N+LT
Sbjct: 28 IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-------------------- 67
Query: 464 NSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPSTIGA---LVDLETLSLASN 512
LP+ V KL L L L+ NQL +IP GA L L + L +N
Sbjct: 68 -----VLPAGVFDKLTQLTQLSLNDNQLK-SIPR--GAFDNLKSLTHIWLLNN 112
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 574 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.98 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.98 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.96 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.96 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.94 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.93 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.93 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.92 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.91 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.91 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.91 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.9 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.89 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.85 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.85 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.85 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.85 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.84 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.84 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.83 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.82 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.81 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.79 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.78 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.78 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.78 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.77 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.77 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.76 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.76 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.76 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.74 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.74 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.74 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.74 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.74 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.73 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.72 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.72 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.72 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.71 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.71 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.7 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.7 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.7 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.68 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.66 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.65 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.64 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.63 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.62 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.6 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.6 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.6 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.59 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.58 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.58 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.57 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.57 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.57 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.56 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.54 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.52 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.43 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.43 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.4 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.38 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.37 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.35 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.34 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.32 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.31 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.28 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.06 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.04 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.91 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.82 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.68 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.67 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.56 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.46 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.19 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.16 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.81 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.72 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.53 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.25 | |
| 2lz0_A | 100 | Uncharacterized protein; hypothetical leucine rich | 86.82 | |
| 2lz0_A | 100 | Uncharacterized protein; hypothetical leucine rich | 80.95 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-63 Score=537.53 Aligned_cols=549 Identities=31% Similarity=0.493 Sum_probs=448.9
Q ss_pred hcccccCCCCccceeeeeecCCCCcEEEEEcCCCCCccc---cC-----------------------CCccCCCCCcEEE
Q 036593 19 LLYLLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGT---IP-----------------------PHLGNLSFLMSLD 72 (574)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~-----------------------~~~~~~~~L~~L~ 72 (574)
.+++|..+.++|.|.|+.|+ .++|++|+++++++.+. ++ ..+..+++|++|+
T Consensus 29 ~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~ 106 (768)
T 3rgz_A 29 LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLD 106 (768)
T ss_dssp SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEE
T ss_pred cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEE
Confidence 57889988899999999998 48999999999888765 32 5788889999999
Q ss_pred ccCCcccccCch--hhcCCCCCCEEEccCCcCccCCCccc-cCCCCCCEEEccCCcccccCCc-----------------
Q 036593 73 VTLNNFYGHLPN--ELGKLGRLKFISFSFNKLSGSIPTWI-GVLSKLQIMSLRNNNITGPIPN----------------- 132 (574)
Q Consensus 73 L~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~----------------- 132 (574)
|++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+.
T Consensus 107 Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls 186 (768)
T 3rgz_A 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186 (768)
T ss_dssp CCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECC
T ss_pred CCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECC
Confidence 999999887877 89999999999999998876666654 5666666666666665433221
Q ss_pred --------CCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCch
Q 036593 133 --------SLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPP 204 (574)
Q Consensus 133 --------~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 204 (574)
.+..+++|++|++++|.+.+..|. ++++++|++|++++|.+....+..+..+++|++|++++|.+.+..+.
T Consensus 187 ~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 265 (768)
T 3rgz_A 187 GNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265 (768)
T ss_dssp SSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC
T ss_pred CCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc
Confidence 125678888888888888866666 88999999999999998877788889999999999999988766555
Q ss_pred hhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCC-ccCCC
Q 036593 205 AIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNT-FGNLR 283 (574)
Q Consensus 205 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~ 283 (574)
. .+++|++|++++|.+.+.+|..++..+++|++|++++|.+....+..+..+++|++|++++|.+.+..|.. +..++
T Consensus 266 ~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 266 L--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp C--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred c--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence 3 77888888888888887888777755688888888888888777778888888888888888887555544 77788
Q ss_pred cCceEEccCCcccccCCCC-ccc----------------cccccccC--CCCCcEEEccCCCCCCCCChhhhhhccccce
Q 036593 284 HLNVLSIRTNNLTTESSSA-DQW----------------SFLSSLTN--CRKLSYLVLDSNPLGGILPPLIGNFSASLQS 344 (574)
Q Consensus 284 ~L~~L~l~~~~~~~~~~~~-~~~----------------~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 344 (574)
+|++|++++|.+....... ... ..+..+.. +++|++|++++|.+++..+..+..+. +++.
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~ 422 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVS 422 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCE
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCE
Confidence 8888888887765321111 000 01112222 56778888888877777777776655 8888
Q ss_pred EEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCC------CCCceEEccCCee
Q 036593 345 FYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP------YDLCHLELNGNKL 418 (574)
Q Consensus 345 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------~~l~~l~l~~~~l 418 (574)
|++++|.+....|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++.+| ..+++|++++|.+
T Consensus 423 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc
Confidence 8888888888888888888888888888888888888888888999999999998887666 3577899999999
Q ss_pred eecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCc--------------------------
Q 036593 419 SGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPS-------------------------- 472 (574)
Q Consensus 419 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-------------------------- 472 (574)
++.+|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+.+|.
T Consensus 503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 888888888899999999999999888888898999999999999988755443
Q ss_pred --------------------------------------------cccCCCCCCEEeCCCCcccccCcccccCCCCCCEee
Q 036593 473 --------------------------------------------NVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLS 508 (574)
Q Consensus 473 --------------------------------------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 508 (574)
.+..+++|+.|++++|++++.+|..++++++|+.|+
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 662 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence 234467899999999999999999999999999999
Q ss_pred CCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCCCCCC
Q 036593 509 LASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFK 573 (574)
Q Consensus 509 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~~~~~ 573 (574)
|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|+++|.||+++.|.
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 727 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999875
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-55 Score=476.10 Aligned_cols=511 Identities=33% Similarity=0.485 Sum_probs=381.4
Q ss_pred CCcEEEEEcCCCCCccccCCCc-cCCCCCcEEEccCCcccccCchh---hcCCCCCCEEEccCCcCccCCCccccCCCCC
Q 036593 41 HQRVKALNLSGMGLGGTIPPHL-GNLSFLMSLDVTLNNFYGHLPNE---LGKLGRLKFISFSFNKLSGSIPTWIGVLSKL 116 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 116 (574)
..++++|+++++.+.+.+|..+ .++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+ +..+++|
T Consensus 125 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L 202 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNL 202 (768)
T ss_dssp CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTC
T ss_pred CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcC
Confidence 4677888888887776666554 67777788887777776665554 5666666666666666554333 2555666
Q ss_pred CEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCC---------------------
Q 036593 117 QIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQ--------------------- 175 (574)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--------------------- 175 (574)
++|++++|.+.+..|. +.++++|++|++++|.+.+..|..+.++++|++|++++|.+.
T Consensus 203 ~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 281 (768)
T ss_dssp CEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEE
T ss_pred CEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCcc
Confidence 6666666655543443 555666666666666555555555555555555555555444
Q ss_pred -cCCCccccCC-CCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCc
Q 036593 176 -DQIPTEIGNL-QNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPD 253 (574)
Q Consensus 176 -~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 253 (574)
...+..+... ++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|......+++|++|++++|.+....+.
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence 3344444333 56666666666665555666666666666666666665555555333566666666666666555555
Q ss_pred CccCCC-CccEEeCCCCceeecCCCCccC--CCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCC
Q 036593 254 SLTNAS-KLIGLDLGSNSFSGHIPNTFGN--LRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGI 330 (574)
Q Consensus 254 ~~~~~~-~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 330 (574)
.+..++ +|++|++++|.+.+..+..+.. +++|++|++++|.+... .+..+..+++|++|++++|.+++.
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--------~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK--------IPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE--------CCGGGGGCTTCCEEECCSSEEESC
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc--------cCHHHhcCCCCCEEECcCCcccCc
Confidence 555554 6666666666666555555544 56666677766666543 344588899999999999999988
Q ss_pred CChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCC----
Q 036593 331 LPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY---- 406 (574)
Q Consensus 331 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---- 406 (574)
.+..+..+. +++.|++.+|.+....|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.+|.
T Consensus 434 ~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 434 IPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 888887776 899999999999988999999999999999999999988899999999999999999999987773
Q ss_pred --CCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCcc-----------------------------------
Q 036593 407 --DLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSS----------------------------------- 449 (574)
Q Consensus 407 --~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----------------------------------- 449 (574)
.+++|++++|.+++.+|..+..+++|+.|++++|++.+..|..
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 5789999999999999999999999999999999987665543
Q ss_pred -----------------------------------ccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccC
Q 036593 450 -----------------------------------LWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNI 494 (574)
Q Consensus 450 -----------------------------------~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 494 (574)
+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 333577999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCc-ccc
Q 036593 495 PSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNM-LEG 564 (574)
Q Consensus 495 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~-~~~ 564 (574)
|..++++++|+.|+|++|++++.+|..+..+++|+.|++++|++.+.+|+. ..+.++....+.+|+ +.|
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 999999999999999999999999999999999999999999999888865 345566667778887 444
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-53 Score=453.65 Aligned_cols=523 Identities=22% Similarity=0.215 Sum_probs=332.4
Q ss_pred CCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEE
Q 036593 41 HQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMS 120 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 120 (574)
.+++++|+++++.+.+..+..|.++++|++|++++|.+.+..+.+|+++++|++|++++|++.+..+.+|+++++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 36899999999999987777899999999999999999888889999999999999999999976667899999999999
Q ss_pred ccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCcccc--CCCCCCEEEccCCcc
Q 036593 121 LRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIG--NLQNLESLALGTNNL 198 (574)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~ 198 (574)
+++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+. .+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999999877778899999999999999999877788889999999999999988866665543 568899999999988
Q ss_pred cccCchhhccc---------------------------CCCcEEEcccCcccccCCchhhcCCC--CcCeeeccccccee
Q 036593 199 SGLIPPAIFNI---------------------------STIRVLNLHSNQFSGRLPSTIGHSLP--NIEYLTLAINNLIG 249 (574)
Q Consensus 199 ~~~~~~~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~ 249 (574)
....+..+..+ ++|+.|++++|.+.+..+..+. .++ +|+.|++++|.+..
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCc
Confidence 87777666544 4566666666666655454443 343 48888888888777
Q ss_pred cCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCcccc-ccccccCCCCCcEEEccCCCCC
Q 036593 250 TIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWS-FLSSLTNCRKLSYLVLDSNPLG 328 (574)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~ 328 (574)
..+..+..+++|++|++++|.+.+..+..+.++++|+.|+++++............. -...+..+++|++|++++|.++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 777777888888888888888877777777777777777777653221000000000 0013566777777777777776
Q ss_pred CCCChhhhhhccccceEEecccccc--ccCCccccC--CCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccC
Q 036593 329 GILPPLIGNFSASLQSFYAYECKLG--GSIPKEIGN--LRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSI 404 (574)
Q Consensus 329 ~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 404 (574)
+..+..+..+. +++.+++++|.+. ......+.. .++|+.+++++|.+.+..+.++..+++|++|++++|++++.+
T Consensus 343 ~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 343 GIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCTTTTTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCChhHhcccc-CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 66555554443 5555555555422 111111111 134555555555555444445555555555555555544332
Q ss_pred C-------CCCceEEccCCeeeecCCcc--------------------------CcCCCCCCeEECCCCeecccCCcccc
Q 036593 405 P-------YDLCHLELNGNKLSGHIPPC--------------------------LASLTSLRELRLGSNKLTSSIPSSLW 451 (574)
Q Consensus 405 ~-------~~l~~l~l~~~~l~~~~~~~--------------------------~~~~~~L~~L~l~~n~~~~~~~~~~~ 451 (574)
| ..++++++++|.+++..+.. +..+++|++|++++|++++..+.++.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 2 23445555555554444444 44445555555555554444444444
Q ss_pred CCCCCCeEeCCCCcceecCC--------ccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCcccc
Q 036593 452 SLEYILEINLSSNSLNDSLP--------SNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVG 523 (574)
Q Consensus 452 ~~~~L~~L~L~~~~l~~~~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 523 (574)
.+++|++|++++|.+..... ..+..+++|++|++++|++..+.+..|.++++|++|++++|+++...+..|.
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 581 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence 45555555555554433211 1134445555555555555433333445555555555555555543334444
Q ss_pred CCcCCCeeeCCCCcccccCCcCcc-cCCCCCeEeccCCccccc
Q 036593 524 SLISLESLDLSGNNFSGKIPKSLE-ALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 524 ~~~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~l~l~~n~~~~~ 565 (574)
.+++|+.|++++|+++...+..+. .+++|+.+++++|++...
T Consensus 582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 555555555555555543333343 445555555555554443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-53 Score=447.80 Aligned_cols=506 Identities=21% Similarity=0.195 Sum_probs=357.0
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCc
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNN 125 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 125 (574)
.+++++.+++ .+|..+. +++++|++++|.+.+..+.+|+++++|++|++++|++.+..|.+|+++++|++|++++|.
T Consensus 16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 3445555444 2343333 245555555555555445555555555555555555555555555555555555555555
Q ss_pred ccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchh
Q 036593 126 ITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPA 205 (574)
Q Consensus 126 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 205 (574)
+....|..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.......+..+++|++|++++|.+....+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 55444555555555555555555555433444555555555555555555433333333555555555555555555555
Q ss_pred hcccCCCc--EEEcccCcccccCCchhhcCCCCcCeeecccccc--------------------------eecCCcCccC
Q 036593 206 IFNISTIR--VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL--------------------------IGTIPDSLTN 257 (574)
Q Consensus 206 l~~~~~L~--~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--------------------------~~~~~~~~~~ 257 (574)
+..+++|+ .|++++|.+.+..+..+ ....|+.++++++.. .......+..
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 55555555 55555555553333322 233455555444320 0111122222
Q ss_pred CC--CccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhh
Q 036593 258 AS--KLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLI 335 (574)
Q Consensus 258 ~~--~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 335 (574)
+. +|+.+++++|.+....+..|..+++|++|++++|.+... +..+..+++|++|++++|.+....+..+
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l---------p~~l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL---------PSGLVGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCC---------CSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCC---------ChhhcccccCCEEECccCCcCcCchhhh
Confidence 22 688889998888877777788888999999988887753 3346778889999999888887766666
Q ss_pred hhhccccceEEeccccccccCC-ccccCCCCCcEEECcCCCCcccC--CcCccccCCCCeEeccCCcccccCC------C
Q 036593 336 GNFSASLQSFYAYECKLGGSIP-KEIGNLRGLILLTLDFNDLNGTI--PTSVGTLQQLQGLSLEDNNLEGSIP------Y 406 (574)
Q Consensus 336 ~~~~~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~------~ 406 (574)
..++ +++.+++++|.+....+ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|++++..| .
T Consensus 322 ~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 400 (606)
T 3t6q_A 322 SNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400 (606)
T ss_dssp GGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT
T ss_pred hccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc
Confidence 6655 88899998888775444 34788899999999999887665 6678888999999999998776544 4
Q ss_pred CCceEEccCCeeeecCCc-cCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceec---CCccccCCCCCCE
Q 036593 407 DLCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDS---LPSNVQKLKVLRV 482 (574)
Q Consensus 407 ~l~~l~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~l~~L~~ 482 (574)
.++++++++|.+++..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 577899999988866554 488999999999999999988888999999999999999998763 3356889999999
Q ss_pred EeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcc
Q 036593 483 LDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNML 562 (574)
Q Consensus 483 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~ 562 (574)
|++++|.+.+..+..+.++++|++|++++|++++..+..+..+++| .|++++|+++...|..+..+++|+.+++++|++
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 9999999998888899999999999999999999999999999999 999999999988888899999999999999999
Q ss_pred ccccC
Q 036593 563 EGEIP 567 (574)
Q Consensus 563 ~~~~p 567 (574)
....|
T Consensus 560 ~c~c~ 564 (606)
T 3t6q_A 560 DCTCS 564 (606)
T ss_dssp ECSGG
T ss_pred cccCC
Confidence 87654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-52 Score=444.80 Aligned_cols=492 Identities=21% Similarity=0.226 Sum_probs=374.5
Q ss_pred CCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEE
Q 036593 41 HQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMS 120 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 120 (574)
..++++|+++++.+.+..|.+|.++++|++|++++|.+.+..+.+|+++++|++|++++|++.+..+..|+++++|++|+
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 47899999999999988888899999999999999998765556799999999999999999888888999999999999
Q ss_pred ccCCcccccCCcCCCCCCCCceeecccccCcccCchhcc--CCCCCCEEEccCCcCCcCCCccccCC-------------
Q 036593 121 LRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIG--NLSNLFDLDLRHNNLQDQIPTEIGNL------------- 185 (574)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l------------- 185 (574)
+++|.+.+..+..+.++++|++|++++|.+.+..+..+. .+++|++|++++|.+....+..+..+
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence 999999877788888999999999999988766555543 56889999999988876666555433
Q ss_pred --------------CCCCEEEccCCcccccCchhhcccCC--CcEEEcccCcccccCCchhhcCCCCcCeeeccccccee
Q 036593 186 --------------QNLESLALGTNNLSGLIPPAIFNIST--IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIG 249 (574)
Q Consensus 186 --------------~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 249 (574)
++|++|++++|.+.+..+..+..++. |++|++++|.+.+..+..+. .+++|++|++++|.+..
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSE
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCc
Confidence 45666777777776666666766644 88888888877744444443 67778888888777776
Q ss_pred cCCcCccCCCCccEEeCCCCcee---------ecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCC-----
Q 036593 250 TIPDSLTNASKLIGLDLGSNSFS---------GHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCR----- 315 (574)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~----- 315 (574)
..+..+..+++|++|+++++... ......|..+++|++|++++|.+....... +.+++
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L 358 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM--------FTGLINLKYL 358 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT--------TTTCTTCCEE
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH--------hccccCCcEE
Confidence 66666666666666666654322 111124555666666666666555433221 33334
Q ss_pred -----------------------CCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCC-ccccCCCCCcEEEC
Q 036593 316 -----------------------KLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIP-KEIGNLRGLILLTL 371 (574)
Q Consensus 316 -----------------------~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~L~l 371 (574)
+|+.|++++|.++...+..+.... +++.+++++|.+...++ ..+..+++|+++++
T Consensus 359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC-CCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 455555555555555555544443 67777777777665443 45667777777777
Q ss_pred cCCCCcccCCcCccccCCCCeEeccCCccc--ccCC------CCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeec
Q 036593 372 DFNDLNGTIPTSVGTLQQLQGLSLEDNNLE--GSIP------YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLT 443 (574)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~------~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 443 (574)
++|.+.+..+..|..+++|++|++++|.+. +..| ..++.+++++|++++..+..+..+++|++|++++|+++
T Consensus 438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred CCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 777776666667777777888887777765 2333 46889999999999877788999999999999999997
Q ss_pred ccCC--------ccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccc
Q 036593 444 SSIP--------SSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQ 515 (574)
Q Consensus 444 ~~~~--------~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 515 (574)
+... ..+..+++|++|++++|.+....+..|..+++|++|++++|+++...+..|.++++|++|++++|+++
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 5422 23788999999999999998766678999999999999999999777788899999999999999999
Q ss_pred ccCCcccc-CCcCCCeeeCCCCcccccC
Q 036593 516 GPIPESVG-SLISLESLDLSGNNFSGKI 542 (574)
Q Consensus 516 ~~~~~~l~-~~~~L~~L~l~~n~~~~~~ 542 (574)
+..+..+. .+++|+.|++++|++.+..
T Consensus 598 ~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 598 SVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp BCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred ccChhHhcccccccCEEEccCCCcccCC
Confidence 87777777 7899999999999998643
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-51 Score=430.77 Aligned_cols=488 Identities=22% Similarity=0.188 Sum_probs=425.7
Q ss_pred CCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEE
Q 036593 41 HQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMS 120 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 120 (574)
...+++|+++++.+++..+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|++.+..|.+|+++++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 36799999999999988899999999999999999999888899999999999999999999988899999999999999
Q ss_pred ccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCC--EEEccCCcc
Q 036593 121 LRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLE--SLALGTNNL 198 (574)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~ 198 (574)
+++|.+....+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+....+..+..+++|+ +|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999876678899999999999999999864434566699999999999999988788899999999 899999999
Q ss_pred cccCchhhcccCCCcEEEcccCccc-------------------------ccCCchhhcCCC--CcCeeecccccceecC
Q 036593 199 SGLIPPAIFNISTIRVLNLHSNQFS-------------------------GRLPSTIGHSLP--NIEYLTLAINNLIGTI 251 (574)
Q Consensus 199 ~~~~~~~l~~~~~L~~L~l~~~~~~-------------------------~~~~~~~~~~l~--~L~~L~l~~~~~~~~~ 251 (574)
....+..+. ...|+.|+++++... ..++...+..+. .|+.++++++.+....
T Consensus 192 ~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 192 AGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred CccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 887776654 467888988876411 011111121222 7899999999998888
Q ss_pred CcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCC
Q 036593 252 PDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGIL 331 (574)
Q Consensus 252 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 331 (574)
+..|..+++|++|++++|.++ ..|..+..+++|++|++++|.+.... ...+..+++|++|++++|.+....
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC--------QISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG--------GGCGGGCTTCSEEECCSCSSCCBC
T ss_pred HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc--------hhhhhccCcCCEEECCCCCccccc
Confidence 888999999999999999998 56778999999999999999988653 234788999999999999887544
Q ss_pred Ch-hhhhhccccceEEeccccccccC--CccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCC---
Q 036593 332 PP-LIGNFSASLQSFYAYECKLGGSI--PKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP--- 405 (574)
Q Consensus 332 ~~-~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--- 405 (574)
+. .+..+ ++++.+++++|.+.... +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..|
T Consensus 342 ~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 342 GTGCLENL-ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp CSSTTTTC-TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred chhhhhcc-CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence 43 34444 49999999999998655 7788999999999999999998888999999999999999999886543
Q ss_pred ----CCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeeccc---CCccccCCCCCCeEeCCCCcceecCCccccCCC
Q 036593 406 ----YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS---IPSSLWSLEYILEINLSSNSLNDSLPSNVQKLK 478 (574)
Q Consensus 406 ----~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~ 478 (574)
..++.|++++|.+++..+..+..+++|++|++++|++.+. .+..+..+++|++|++++|.+.+..+..+..++
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence 4688999999999988888999999999999999999763 336788999999999999999998899999999
Q ss_pred CCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 479 VLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 479 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
+|++|++++|++.+..+..+.++++| +|++++|.+++..|..+..+++|+.|++++|++.+
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 99999999999998889999999999 99999999998888889999999999999999985
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-51 Score=432.34 Aligned_cols=507 Identities=21% Similarity=0.181 Sum_probs=388.8
Q ss_pred CcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEc
Q 036593 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 121 (574)
+++++|+++++.+++..+..|.++++|++|++++|.+.+..+.+|.++++|++|++++|++.+..|.+|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 56777777777777666667777777777777777777666777777777777777777777666777777777777777
Q ss_pred cCCcccccCCcCCCCCCCCceeecccccCcc-cCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCC----EEEccCC
Q 036593 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLE----SLALGTN 196 (574)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~ 196 (574)
++|.+....+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+....+..+..+++|+ ++++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 7777765555667777777777777777764 4567777777777777777777766666665554443 6777777
Q ss_pred cccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceec------CCcCccCCC--CccEEeC-C
Q 036593 197 NLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGT------IPDSLTNAS--KLIGLDL-G 267 (574)
Q Consensus 197 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------~~~~~~~~~--~L~~L~l-~ 267 (574)
.+....+..+... +|+.|++++|.+.+.........++.++.+.+....+... ....+..+. .++.+++ .
T Consensus 192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 7765555544433 6777777777665332222333666777666543322110 011111111 3556666 5
Q ss_pred CCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEe
Q 036593 268 SNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYA 347 (574)
Q Consensus 268 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 347 (574)
.+.+.+..+. +..+++|+.++++++.+...+ .+..+++|++|++++|.+..+ +.. ..++++.+++
T Consensus 271 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~----------~l~~~~~L~~L~l~~n~l~~l-p~~---~l~~L~~L~l 335 (606)
T 3vq2_A 271 TNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE----------DVPKHFKWQSLSIIRCQLKQF-PTL---DLPFLKSLTL 335 (606)
T ss_dssp CTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC----------CCCTTCCCSEEEEESCCCSSC-CCC---CCSSCCEEEE
T ss_pred cccccccccc-cccCCCCCEEEecCccchhhh----------hccccccCCEEEcccccCccc-ccC---CCCccceeec
Confidence 5566655665 888999999999999886543 377889999999999998544 433 4458999999
Q ss_pred ccccccccCCccccCCCCCcEEECcCCCCccc--CCcCccccCCCCeEeccCCcccccC-----CCCCceEEccCCeeee
Q 036593 348 YECKLGGSIPKEIGNLRGLILLTLDFNDLNGT--IPTSVGTLQQLQGLSLEDNNLEGSI-----PYDLCHLELNGNKLSG 420 (574)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~l~~l~l~~~~l~~ 420 (574)
++|...... .+..+++|++|++++|.+++. .+..+..+++|++|++++|++++.. ...++.+++++|.+++
T Consensus 336 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 336 TMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp ESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES
T ss_pred cCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC
Confidence 999665444 467899999999999998865 3677889999999999999877532 2468899999999997
Q ss_pred cCC-ccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCccee-cCCccccCCCCCCEEeCCCCcccccCcccc
Q 036593 421 HIP-PCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLND-SLPSNVQKLKVLRVLDLSRNQLSGNIPSTI 498 (574)
Q Consensus 421 ~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 498 (574)
..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|++.+..+..+
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 776 678899999999999999998888999999999999999999987 478889999999999999999998888889
Q ss_pred cCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCC-CCCeEeccCCccccccC
Q 036593 499 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALS-HLKQFNVSQNMLEGEIP 567 (574)
Q Consensus 499 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~l~l~~n~~~~~~p 567 (574)
.++++|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.+++++|++....|
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999999888999999999999999999999 5677799997 69999999999987554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=418.91 Aligned_cols=482 Identities=20% Similarity=0.175 Sum_probs=386.2
Q ss_pred CCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEE
Q 036593 40 RHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIM 119 (574)
Q Consensus 40 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 119 (574)
...++++|+++++.+++..+.+|.++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..+..++++++|++|
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 45889999999999998889999999999999999999988889999999999999999999998887889999999999
Q ss_pred EccCCcccc-cCCcCCCCCCCCceeecccccCcccCchhccCCCCC----CEEEccCCcCCcCCCccccCCCCCCEEEcc
Q 036593 120 SLRNNNITG-PIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNL----FDLDLRHNNLQDQIPTEIGNLQNLESLALG 194 (574)
Q Consensus 120 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 194 (574)
++++|.+.. ..|..+.++++|++|++++|.+.+..+..++.+++| ++|++++|.+....+..+... +|++|+++
T Consensus 134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~ 212 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLR 212 (606)
T ss_dssp ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEE
T ss_pred eCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeecc
Confidence 999999875 468889999999999999999987777777766655 489999999987666666555 89999999
Q ss_pred CCccc-ccCchhhcccCCCcEEEcccCcccc-----cCCchhhcCCC--CcCeeec-ccccceecCCcCccCCCCccEEe
Q 036593 195 TNNLS-GLIPPAIFNISTIRVLNLHSNQFSG-----RLPSTIGHSLP--NIEYLTL-AINNLIGTIPDSLTNASKLIGLD 265 (574)
Q Consensus 195 ~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~l~--~L~~L~l-~~~~~~~~~~~~~~~~~~L~~L~ 265 (574)
+|.+. ...+..+..+++|+.+.+....+.+ .........+. .++.+++ ..+.+....+. +..+++|+.++
T Consensus 213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~ 291 (606)
T 3vq2_A 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMS 291 (606)
T ss_dssp SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEE
T ss_pred CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEE
Confidence 99876 4566778889999988875443221 11111111111 3444555 33444444443 77778888888
Q ss_pred CCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceE
Q 036593 266 LGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSF 345 (574)
Q Consensus 266 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 345 (574)
++++.+.. .+ .+..+++|++|++++|.+...+ .+ .+++|++|++++|...... .+. ..++++.+
T Consensus 292 l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~~lp----------~~-~l~~L~~L~l~~n~~~~~~--~~~-~l~~L~~L 355 (606)
T 3vq2_A 292 LAGVSIKY-LE-DVPKHFKWQSLSIIRCQLKQFP----------TL-DLPFLKSLTLTMNKGSISF--KKV-ALPSLSYL 355 (606)
T ss_dssp EESCCCCC-CC-CCCTTCCCSEEEEESCCCSSCC----------CC-CCSSCCEEEEESCSSCEEC--CCC-CCTTCCEE
T ss_pred ecCccchh-hh-hccccccCCEEEcccccCcccc----------cC-CCCccceeeccCCcCccch--hhc-cCCCCCEE
Confidence 88887753 33 6777888888888888774332 24 6778888888877433322 222 23478888
Q ss_pred Eecccccccc--CCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCC-------CCCceEEccCC
Q 036593 346 YAYECKLGGS--IPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP-------YDLCHLELNGN 416 (574)
Q Consensus 346 ~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~l~~l~l~~~ 416 (574)
++++|.+... .+..+..+++|++|++++|.+.+. +..+..+++|++|++++|++.+..| ..++.|++++|
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 8888877654 366777888888888888887753 3677888888888888888776544 35778888888
Q ss_pred eeeecCCccCcCCCCCCeEECCCCeecc-cCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCc
Q 036593 417 KLSGHIPPCLASLTSLRELRLGSNKLTS-SIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIP 495 (574)
Q Consensus 417 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 495 (574)
.+++..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 8888888889999999999999999987 378889999999999999999999888899999999999999999998888
Q ss_pred ccccCCCCCCEeeCCCCcccccCCccccCCc-CCCeeeCCCCccccc
Q 036593 496 STIGALVDLETLSLASNQFQGPIPESVGSLI-SLESLDLSGNNFSGK 541 (574)
Q Consensus 496 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~ 541 (574)
..+.++++|++|++++|+++ .+|..+..++ +|+.|++++|++.+.
T Consensus 515 ~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp GGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred HHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 99999999999999999999 6677788887 599999999999853
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-49 Score=432.43 Aligned_cols=519 Identities=19% Similarity=0.177 Sum_probs=423.7
Q ss_pred CccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccC-chhhcCCCCCCEEEccCCcCccCC
Q 036593 28 MRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHL-PNELGKLGRLKFISFSFNKLSGSI 106 (574)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~ 106 (574)
..+.|..+++ -.+++++|++++|.+++..+..|.++++|++|+|++|...+.+ +.+|+++++|++|++++|++.+..
T Consensus 12 s~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 12 RFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp SCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred cCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 4456666776 3578999999999999888999999999999999999655444 778999999999999999999888
Q ss_pred CccccCCCCCCEEEccCCcccccCCcC--CCCCCCCceeecccccCcccCc-hhccCCCCCCEEEccCCcCCcCCCcccc
Q 036593 107 PTWIGVLSKLQIMSLRNNNITGPIPNS--LFNLSKLEMLQASFNVIDGNIP-SGIGNLSNLFDLDLRHNNLQDQIPTEIG 183 (574)
Q Consensus 107 ~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 183 (574)
|.+|.++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+....+..+.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 999999999999999999988655554 8899999999999999875544 5789999999999999999888888887
Q ss_pred CC--CCCCEEEccCCcccccCchhhcccCC------CcEEEcccCcccccCCchhhcCC--CCcCeeeccccc-------
Q 036593 184 NL--QNLESLALGTNNLSGLIPPAIFNIST------IRVLNLHSNQFSGRLPSTIGHSL--PNIEYLTLAINN------- 246 (574)
Q Consensus 184 ~l--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~------- 246 (574)
.+ ++|+.|+++.|.+....+..+..+++ |+.|++++|.+.+..+..+...+ ..++.+.+..+.
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 77 89999999999988777766666555 99999999988777776665433 466777765322
Q ss_pred --ceecCCcCccC--CCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEc
Q 036593 247 --LIGTIPDSLTN--ASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVL 322 (574)
Q Consensus 247 --~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 322 (574)
+.......|.. .++|+.|++++|.+....+..|..+++|+.|++++|.+...... .+.++++|++|++
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--------~~~~l~~L~~L~L 321 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE--------AFYGLDNLQVLNL 321 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT--------TTTTCSSCCEEEE
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH--------HhcCCCCCCEEEC
Confidence 22222233443 36899999999999888888899999999999999998875433 3788999999999
Q ss_pred cCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccc
Q 036593 323 DSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG 402 (574)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 402 (574)
++|.++...+..+..++ +++.|++++|.+....+..+..+++|++|++++|.+++. ..+++|++|++++|+++.
T Consensus 322 s~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT 395 (844)
T ss_dssp ESCCCSCCCSCSCSSCT-TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC
T ss_pred CCCCCCccCHHHhcCCC-CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc
Confidence 99999888777777665 899999999999877777889999999999999988743 338899999999999874
Q ss_pred c--CCCCCceEEccCCeeeecCC-ccCcCCCCCCeEECCCCeecccCCc-cccCCCCCCeEeCCCCcce-----ecCCcc
Q 036593 403 S--IPYDLCHLELNGNKLSGHIP-PCLASLTSLRELRLGSNKLTSSIPS-SLWSLEYILEINLSSNSLN-----DSLPSN 473 (574)
Q Consensus 403 ~--~~~~l~~l~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~l~-----~~~~~~ 473 (574)
. ....+..+++++|++++... ..+..+++|+.|++++|++++..+. .+..+++|++|++++|.+. +..+..
T Consensus 396 l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp CCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred ccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh
Confidence 2 23467899999999885322 2345789999999999999755332 4566899999999999986 334466
Q ss_pred ccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCC
Q 036593 474 VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLK 553 (574)
Q Consensus 474 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 553 (574)
+..+++|++|++++|.+++..+..|.++++|+.|+|++|++++..+..+. ++|+.|++++|++....|..| ++|+
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~ 550 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLS 550 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCC
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcC
Confidence 88899999999999999988888899999999999999999976666666 799999999999998777665 4799
Q ss_pred eEeccCCccccccC
Q 036593 554 QFNVSQNMLEGEIP 567 (574)
Q Consensus 554 ~l~l~~n~~~~~~p 567 (574)
.+++++|++....|
T Consensus 551 ~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 551 VLDITHNKFICECE 564 (844)
T ss_dssp EEEEEEECCCCSSS
T ss_pred EEEecCCCcccccc
Confidence 99999999876543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-48 Score=407.69 Aligned_cols=492 Identities=21% Similarity=0.193 Sum_probs=339.0
Q ss_pred CcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEc
Q 036593 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 121 (574)
.++++|+++++.+++..+.+|..+++|++|++++|.+.+..+.+|+++++|++|++++|++.+..+.+|+.+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45677777777776666666777777777777777766655666777777777777777776666666777777777777
Q ss_pred cCCcccccCCcCCCCCCCCceeecccccCcc-cCchhccCCCCCCEEEccCCcCCcCCCccccCCCCC----CEEEccCC
Q 036593 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNL----ESLALGTN 196 (574)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~ 196 (574)
++|.+....+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+....+..++.+++| +++++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 7776664444456677777777777776654 346667777777777777776665555566666666 66777777
Q ss_pred cccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccc------eecCCcCccCCC--CccEEeCCC
Q 036593 197 NLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL------IGTIPDSLTNAS--KLIGLDLGS 268 (574)
Q Consensus 197 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~~~--~L~~L~l~~ 268 (574)
.+....+..+... +|+.|++++|.............++.++...+....+ .......+..++ .++.+++.+
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 7666655555444 5777777665322111111112444444433322111 111222233222 245556655
Q ss_pred C-ceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEe
Q 036593 269 N-SFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYA 347 (574)
Q Consensus 269 ~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 347 (574)
+ .+.+..+..+..+++|+.|++++|.+...+ ..+..+ +|++|++++|.+..... ...++++.+.+
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~---------~~~~~~-~L~~L~l~~n~~~~l~~----~~l~~L~~L~l 332 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK---------DFSYNF-GWQHLELVNCKFGQFPT----LKLKSLKRLTF 332 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEECSCC---------BCCSCC-CCSEEEEESCBCSSCCB----CBCSSCCEEEE
T ss_pred chhhhhhchhhhcCcCcccEEEecCccchhhh---------hhhccC-CccEEeeccCcccccCc----ccccccCEEeC
Confidence 5 555556667777778888888777766432 224455 77777777777664332 12336666666
Q ss_pred ccccccccCCccccCCCCCcEEECcCCCCcccC--CcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCcc
Q 036593 348 YECKLGGSIPKEIGNLRGLILLTLDFNDLNGTI--PTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPC 425 (574)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~ 425 (574)
.++......+. ..+++|++|++++|.+++.. +..+..+++|++|++++|+++ +. +..
T Consensus 333 ~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~------------------~~-~~~ 391 (570)
T 2z63_A 333 TSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI------------------TM-SSN 391 (570)
T ss_dssp ESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE------------------EE-EEE
T ss_pred cCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc------------------cc-ccc
Confidence 66665544433 56666677777666665432 344556666666666666655 22 333
Q ss_pred CcCCCCCCeEECCCCeecccCC-ccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCccc-ccCcccccCCCC
Q 036593 426 LASLTSLRELRLGSNKLTSSIP-SSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS-GNIPSTIGALVD 503 (574)
Q Consensus 426 ~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~ 503 (574)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +..+..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 7789999999999999986655 57889999999999999999888888999999999999999987 457788999999
Q ss_pred CCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCC
Q 036593 504 LETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVK 569 (574)
Q Consensus 504 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~ 569 (574)
|++|++++|++++..|..+..+++|+.|++++|++....+..|..+++|+.|++++|++++..|..
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999999888999999999999999999999887788999999999999999999998853
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=419.38 Aligned_cols=505 Identities=20% Similarity=0.205 Sum_probs=423.6
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCc-cCCCccccCCCCCCEEEccC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS-GSIPTWIGVLSKLQIMSLRN 123 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~ 123 (574)
+.+++++++++. +|. -.+++++|+|++|.+.+..+..|.++++|++|++++|... .+.|.+|.++++|++|++++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 678889999985 565 3479999999999999888899999999999999999544 34588999999999999999
Q ss_pred CcccccCCcCCCCCCCCceeecccccCcccCchh--ccCCCCCCEEEccCCcCCcCCC-ccccCCCCCCEEEccCCcccc
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSG--IGNLSNLFDLDLRHNNLQDQIP-TEIGNLQNLESLALGTNNLSG 200 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~ 200 (574)
|.+....|.+|.++++|++|++++|.+.+..+.. +.++++|++|++++|.+....+ ..|+++++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999888999999999999999999998655655 8999999999999999986654 579999999999999999988
Q ss_pred cCchhhccc--CCCcEEEcccCcccccCCchhhcCCC------CcCeeecccccceecCCcCccC---CCCccEEeCCCC
Q 036593 201 LIPPAIFNI--STIRVLNLHSNQFSGRLPSTIGHSLP------NIEYLTLAINNLIGTIPDSLTN---ASKLIGLDLGSN 269 (574)
Q Consensus 201 ~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~------~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~ 269 (574)
..+..+..+ ++|+.|++++|.+.+..+..+. .++ .|+.|++++|.+....+..+.. ...++.+.+..+
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 888888877 8999999999998877666554 333 4999999999876555554443 356888887743
Q ss_pred ce---------eecCCCCccCC--CcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhh
Q 036593 270 SF---------SGHIPNTFGNL--RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF 338 (574)
Q Consensus 270 ~~---------~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 338 (574)
.. .......|.++ ++|+.|++++|.+..... ..+..+++|+.|++++|.+....+..+..+
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 313 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS--------RVFETLKDLKVLNLAYNKINKIADEAFYGL 313 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS--------CCSSSCCCCCEEEEESCCCCEECTTTTTTC
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccCh--------hhhhcCCCCCEEECCCCcCCCCChHHhcCC
Confidence 22 22233345443 789999999999876533 338889999999999999998888777766
Q ss_pred ccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccC-CCCCceEEccCCe
Q 036593 339 SASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSI-PYDLCHLELNGNK 417 (574)
Q Consensus 339 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~l~~~~ 417 (574)
. +|+.|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+++.. .+.++.+++++|.
T Consensus 314 ~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 314 D-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK 392 (844)
T ss_dssp S-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCC
T ss_pred C-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCC
Confidence 5 9999999999999888899999999999999999999888888999999999999999988532 4579999999999
Q ss_pred eeecCCccCcCCCCCCeEECCCCeecccCC-ccccCCCCCCeEeCCCCcceecCCc-cccCCCCCCEEeCCCCcccc---
Q 036593 418 LSGHIPPCLASLTSLRELRLGSNKLTSSIP-SSLWSLEYILEINLSSNSLNDSLPS-NVQKLKVLRVLDLSRNQLSG--- 492 (574)
Q Consensus 418 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~-~~~~l~~L~~L~l~~n~~~~--- 492 (574)
++ .+|.. ..+++.|++++|++.+... ..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+..
T Consensus 393 l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 393 LV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp CC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred cc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence 98 44443 5689999999999975432 2355899999999999999765432 45668999999999999863
Q ss_pred --cCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCC
Q 036593 493 --NIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVK 569 (574)
Q Consensus 493 --~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~ 569 (574)
..+..|.++++|+.|+|++|.+++..+..|..+++|+.|++++|+++...+..+. ++|+.|++++|++++..|..
T Consensus 469 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 3345688899999999999999988888899999999999999999976666666 89999999999999998854
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-47 Score=396.38 Aligned_cols=495 Identities=19% Similarity=0.212 Sum_probs=354.3
Q ss_pred ccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCc
Q 036593 29 RLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPT 108 (574)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 108 (574)
.|.|.++ | ++++++++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|++.+..+.
T Consensus 3 ~C~~~~~-c----------~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-C----------DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-E----------ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-E----------ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 3666665 5 44556666 3555443 6788888888887776677788888888888888888777777
Q ss_pred cccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcc-cCchhccCCCCCCEEEccCCc-CCcCCCccccCCC
Q 036593 109 WIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNN-LQDQIPTEIGNLQ 186 (574)
Q Consensus 109 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~ 186 (574)
+|.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+ ..|..++++++|++|++++|. +....+..+.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 78888888888888888775555567788888888888887764 245567788888888888876 4444445677888
Q ss_pred CCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecC---CcCccCCCCccE
Q 036593 187 NLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTI---PDSLTNASKLIG 263 (574)
Q Consensus 187 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~ 263 (574)
+|++|++++|.+....+..+..+++|++|+++++... .++..+...+++|+.|++++|.+.... ......+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 8888888888887777777888888888888887765 555555556788888888887766431 122335677888
Q ss_pred EeCCCCceeecCC----CCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCC----hhh
Q 036593 264 LDLGSNSFSGHIP----NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILP----PLI 335 (574)
Q Consensus 264 L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~ 335 (574)
|+++++.+.+..+ ..+..+++|+.+++++|.+........ .....+..+++++.+++.++.+..... ...
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~ 305 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP--SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC--CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccc--cchhhhhhhcccccccccccccchhhhcccchhh
Confidence 8888887764322 334567788888888887665432110 112335667888888888776654210 111
Q ss_pred hhhccccceEEeccccccccCCccc-cCCCCCcEEECcCCCCcccC---CcCccccCCCCeEeccCCcccccCCCCCceE
Q 036593 336 GNFSASLQSFYAYECKLGGSIPKEI-GNLRGLILLTLDFNDLNGTI---PTSVGTLQQLQGLSLEDNNLEGSIPYDLCHL 411 (574)
Q Consensus 336 ~~~~~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 411 (574)
.....+++.+.++++.+. .+|..+ ..+++|++|++++|.+.+.. ...+..+++|++|++++|++++..+
T Consensus 306 ~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 378 (549)
T 2z81_A 306 YSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK------ 378 (549)
T ss_dssp HHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH------
T ss_pred hhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc------
Confidence 223347788888887776 445444 56788888888888877643 2335677888888888887763100
Q ss_pred EccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCccc
Q 036593 412 ELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS 491 (574)
Q Consensus 412 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~ 491 (574)
.+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+... +..+ .++|++|++++|+++
T Consensus 379 ----------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~ 444 (549)
T 2z81_A 379 ----------TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLD 444 (549)
T ss_dssp ----------HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCS
T ss_pred ----------chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChh
Confidence 1134677889999999999887 6677788888999999999988643 3222 268999999999887
Q ss_pred ccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccC
Q 036593 492 GNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIP 567 (574)
Q Consensus 492 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 567 (574)
+. ..++++|++|++++|+++ .+|. ...+++|+.|++++|++....++.|..+++|+.|++++|++.+..|
T Consensus 445 ~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 445 SF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 53 357889999999999988 5555 4667899999999999998777788999999999999999888776
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-47 Score=401.24 Aligned_cols=484 Identities=20% Similarity=0.279 Sum_probs=344.3
Q ss_pred cccccCCCCccce---eeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcc------cc------cCch
Q 036593 20 LYLLKTTNMRLSW---VGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNF------YG------HLPN 84 (574)
Q Consensus 20 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~------~~------~~~~ 84 (574)
.+.|..+.++|.| .|+.|+.. ++|+.|+++++++.|.+|+.+.++++|++|+|++|.+ .+ .+|.
T Consensus 57 ~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~ 135 (636)
T 4eco_A 57 GANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135 (636)
T ss_dssp -CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH
T ss_pred CCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchH
Confidence 3468888999999 99999864 8999999999999999999999999999999999975 22 2232
Q ss_pred hhcCCCCCCEEEccCCcCccCCCccccC-------------------CCCCCEEEcc--CCcccccCCcCCCCCCCCcee
Q 036593 85 ELGKLGRLKFISFSFNKLSGSIPTWIGV-------------------LSKLQIMSLR--NNNITGPIPNSLFNLSKLEML 143 (574)
Q Consensus 85 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------------l~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~L 143 (574)
.. +..|+ +++..+.+.+..+..+.. ...++.+.+. .|.+.+ +|..+.++++|++|
T Consensus 136 ~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L 211 (636)
T 4eco_A 136 EQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQF 211 (636)
T ss_dssp HH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEE
T ss_pred HH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEE
Confidence 22 34445 555555555444443331 1122222222 345554 66667777777777
Q ss_pred ecccccCccc-----------------Cchhcc--CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCc-ccc-cC
Q 036593 144 QASFNVIDGN-----------------IPSGIG--NLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNN-LSG-LI 202 (574)
Q Consensus 144 ~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~ 202 (574)
++++|.+.+. +|..++ ++++|++|++++|.+....|..+.++++|++|++++|. +.+ ..
T Consensus 212 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~l 291 (636)
T 4eco_A 212 YMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291 (636)
T ss_dssp EEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHH
T ss_pred ECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccc
Confidence 7777777653 677777 77888888888777777777777778888888888777 665 56
Q ss_pred chhhccc------CCCcEEEcccCcccccCCc--hhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeec
Q 036593 203 PPAIFNI------STIRVLNLHSNQFSGRLPS--TIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGH 274 (574)
Q Consensus 203 ~~~l~~~------~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 274 (574)
|..+..+ ++|++|++++|.+. .+|. .+. .+++|+.|++++|.+....+ .+..+++|++|++++|.+. .
T Consensus 292 p~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~ 367 (636)
T 4eco_A 292 KDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-E 367 (636)
T ss_dssp HHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-E
T ss_pred hHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-c
Confidence 6666665 77888888887777 6666 444 67777777777777775555 6777777777777777777 5
Q ss_pred CCCCccCCCc-CceEEccCCcccccCCCCccccccccccC--CCCCcEEEccCCCCCCCCChhhhhhccccceEEecccc
Q 036593 275 IPNTFGNLRH-LNVLSIRTNNLTTESSSADQWSFLSSLTN--CRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECK 351 (574)
Q Consensus 275 ~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 351 (574)
.|..+..+++ |+.|++++|.+...+ ..+.. +++|++|++++|.+.+.
T Consensus 368 lp~~l~~l~~~L~~L~Ls~N~l~~lp---------~~~~~~~l~~L~~L~Ls~N~l~~~--------------------- 417 (636)
T 4eco_A 368 IPANFCGFTEQVENLSFAHNKLKYIP---------NIFDAKSVSVMSAIDFSYNEIGSV--------------------- 417 (636)
T ss_dssp CCTTSEEECTTCCEEECCSSCCSSCC---------SCCCTTCSSCEEEEECCSSCTTTT---------------------
T ss_pred ccHhhhhhcccCcEEEccCCcCcccc---------hhhhhcccCccCEEECcCCcCCCc---------------------
Confidence 5666777777 777777777766432 11333 23666666666665543
Q ss_pred ccccCCcccc-------CCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCc
Q 036593 352 LGGSIPKEIG-------NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPP 424 (574)
Q Consensus 352 ~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~ 424 (574)
.|..+. .+++|++|++++|.++......+..+++|++|++++|+++ .+|..... ....
T Consensus 418 ----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~----------~~~~ 482 (636)
T 4eco_A 418 ----DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLK----------DENE 482 (636)
T ss_dssp ----TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSE----------ETTE
T ss_pred ----chhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhc----------cccc
Confidence 333343 6678999999999998655555677899999999999988 44431110 1111
Q ss_pred cCcCCCCCCeEECCCCeecccCCcccc--CCCCCCeEeCCCCcceecCCccccCCCCCCEEeC------CCCcccccCcc
Q 036593 425 CLASLTSLRELRLGSNKLTSSIPSSLW--SLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDL------SRNQLSGNIPS 496 (574)
Q Consensus 425 ~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l------~~n~~~~~~~~ 496 (574)
.+..+++|++|++++|+++ .++..+. .+++|++|++++|.+.+ +|..+..+++|++|++ ++|.+.+..+.
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 2334559999999999998 6777776 89999999999999987 7778889999999999 45667777888
Q ss_pred cccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcc--------cCCCCCeEeccCCcc
Q 036593 497 TIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLE--------ALSHLKQFNVSQNML 562 (574)
Q Consensus 497 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~--------~l~~L~~l~l~~n~~ 562 (574)
.+.++++|++|++++|.++ .+|..+. ++|+.|++++|++.......+. .+...+..++.+|+.
T Consensus 561 ~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~ 631 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631 (636)
T ss_dssp TGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGG
T ss_pred HHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcc
Confidence 8999999999999999995 6777655 7999999999988764433321 222345557777764
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-45 Score=390.81 Aligned_cols=485 Identities=20% Similarity=0.264 Sum_probs=329.7
Q ss_pred cccCCC-----Cc--cce------------eeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEc-cCCccccc
Q 036593 22 LLKTTN-----MR--LSW------------VGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDV-TLNNFYGH 81 (574)
Q Consensus 22 ~~~~~~-----~~--~~~------------~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~ 81 (574)
.|..+. .+ |.| .|+.|+. .++|+.|+++++++.|.+|+.+.++++|++|+| ++|.+.+.
T Consensus 285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~ 363 (876)
T 4ecn_A 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363 (876)
T ss_dssp GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHT
T ss_pred CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchHHhccccceEeeeccccccccc
Confidence 687554 45 999 9999986 589999999999999999999999999999999 77776554
Q ss_pred CchhhcCC-CCCCE--------------EEc-cCCcCcc-----------CCCccccCCCCCCEEEccC--CcccccCCc
Q 036593 82 LPNELGKL-GRLKF--------------ISF-SFNKLSG-----------SIPTWIGVLSKLQIMSLRN--NNITGPIPN 132 (574)
Q Consensus 82 ~~~~~~~~-~~L~~--------------L~l-~~~~~~~-----------~~~~~~~~l~~L~~L~l~~--~~~~~~~~~ 132 (574)
.+...... +.+.. ++. ....+.+ ..+........++.+.+.. |.+.+ +|.
T Consensus 364 ~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~ 442 (876)
T 4ecn_A 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK 442 (876)
T ss_dssp TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG
T ss_pred ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhH
Confidence 22110000 00000 000 0000000 0000011222333333332 44543 555
Q ss_pred CCCCCCCCceeecccccCcc-----------------cCchhcc--CCCCCCEEEccCCcCCcCCCccccCCCCCCEEEc
Q 036593 133 SLFNLSKLEMLQASFNVIDG-----------------NIPSGIG--NLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLAL 193 (574)
Q Consensus 133 ~~~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 193 (574)
.+.++++|++|++++|.+.+ .+|..++ ++++|++|++++|.+....|..+.++++|+.|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 56666666666666666654 3677766 8888888888888777777788888888888888
Q ss_pred cCCc-ccc-cCchhhcccC-------CCcEEEcccCcccccCCc--hhhcCCCCcCeeecccccceecCCcCccCCCCcc
Q 036593 194 GTNN-LSG-LIPPAIFNIS-------TIRVLNLHSNQFSGRLPS--TIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLI 262 (574)
Q Consensus 194 ~~~~-~~~-~~~~~l~~~~-------~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 262 (574)
++|. +.+ ..|..+..++ +|++|++++|.+. .+|. .+. .+++|+.|++++|.+. ..+ .+..+++|+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLT 598 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-BCC-CCCTTSEES
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-cch-hhcCCCcce
Confidence 8887 665 5666665554 8888888888888 7777 554 7888888888888887 455 788888899
Q ss_pred EEeCCCCceeecCCCCccCCCc-CceEEccCCcccccCCCCccccccccccCC--CCCcEEEccCCCCCCCCChhhhhhc
Q 036593 263 GLDLGSNSFSGHIPNTFGNLRH-LNVLSIRTNNLTTESSSADQWSFLSSLTNC--RKLSYLVLDSNPLGGILPPLIGNFS 339 (574)
Q Consensus 263 ~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~ 339 (574)
.|++++|.+. ..|..+..+++ |+.|++++|.+...+ ..+... ++|+.|++++|.+.+..+..
T Consensus 599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp---------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l----- 663 (876)
T 4ecn_A 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIP---------NIFNAKSVYVMGSVDFSYNKIGSEGRNI----- 663 (876)
T ss_dssp EEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCC---------SCCCTTCSSCEEEEECCSSCTTTTSSSC-----
T ss_pred EEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCc---------hhhhccccCCCCEEECcCCcCCCccccc-----
Confidence 9999998887 67777888888 999999998877432 224444 34899999998887543211
Q ss_pred cccceEEeccccccccCCcccc--CCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCe
Q 036593 340 ASLQSFYAYECKLGGSIPKEIG--NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNK 417 (574)
Q Consensus 340 ~~L~~l~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~ 417 (574)
+..+. .+++|+.|++++|.+.......+..+++|++|++++|+++ .+|..+..
T Consensus 664 -----------------~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~------- 718 (876)
T 4ecn_A 664 -----------------SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLK------- 718 (876)
T ss_dssp -----------------SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSS-------
T ss_pred -----------------hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhc-------
Confidence 11111 3457888888888887444344457788888888888877 33321100
Q ss_pred eeecCCccCcCCCCCCeEECCCCeecccCCcccc--CCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCC------Cc
Q 036593 418 LSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLW--SLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSR------NQ 489 (574)
Q Consensus 418 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~------n~ 489 (574)
.....+.++++|++|+|++|+++ .++..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|++++ |.
T Consensus 719 ---~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 719 ---PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp ---CTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred ---cccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccc
Confidence 01111334558888888888887 5666665 78888888888888876 566677888888888866 66
Q ss_pred ccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCC
Q 036593 490 LSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQN 560 (574)
Q Consensus 490 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n 560 (574)
+.+..|..+.++++|+.|+|++|.+. .+|..+. ++|+.|+|++|++....+..+.....+..+.+.+|
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n 861 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECC
T ss_pred ccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCC
Confidence 77777888888999999999999884 6777655 58999999999888766666554444444444444
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=376.45 Aligned_cols=486 Identities=22% Similarity=0.219 Sum_probs=370.5
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 124 (574)
+.+++++.+++ .+|..+. +++++|++++|.+.+..+.+|.++++|++|++++|++.+..+.+|+++++|++|++++|
T Consensus 10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 35788887777 4666554 58999999999998887889999999999999999999888899999999999999999
Q ss_pred cccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcC-CCccccCCCCCCEEEccCCcccccCc
Q 036593 125 NITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ-IPTEIGNLQNLESLALGTNNLSGLIP 203 (574)
Q Consensus 125 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 203 (574)
.+....+.+|.++++|++|++++|.+.+..+..++++++|++|++++|.+... .|..+.++++|++|++++|.+....+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 99877778899999999999999999855555699999999999999998863 58889999999999999999998888
Q ss_pred hhhcccCCC----cEEEcccCcccccCCchhhcCCCCcCeeeccccccee-cCCcCccCCCCccEEeCCCCc------ee
Q 036593 204 PAIFNISTI----RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIG-TIPDSLTNASKLIGLDLGSNS------FS 272 (574)
Q Consensus 204 ~~l~~~~~L----~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~------~~ 272 (574)
..+..+++| +.+++++|.+.+..+..+. ..+|+.++++++.... ..+..+..+++++...+.... +.
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 888888888 8999999998855454442 3379999988764321 122334455555554443211 12
Q ss_pred ecCCCCccCCCc--CceEEccCC-cccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEecc
Q 036593 273 GHIPNTFGNLRH--LNVLSIRTN-NLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYE 349 (574)
Q Consensus 273 ~~~~~~l~~l~~--L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~ 349 (574)
......+..+++ ++.+++..+ .+... ....+..+++|+.|+++++.+... +..+... +++.+++.+
T Consensus 245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~--------~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~~--~L~~L~l~~ 313 (570)
T 2z63_A 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDD--------IIDLFNCLTNVSSFSLVSVTIERV-KDFSYNF--GWQHLELVN 313 (570)
T ss_dssp ECCTTTTGGGGGSEEEEEEEEETTEEESC--------STTTTGGGTTCSEEEEESCEECSC-CBCCSCC--CCSEEEEES
T ss_pred hcchhhhccccccchhhhhhhcchhhhhh--------chhhhcCcCcccEEEecCccchhh-hhhhccC--CccEEeecc
Confidence 222333444433 334444444 22222 233366677777777777766642 3333333 566666666
Q ss_pred ccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCC
Q 036593 350 CKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASL 429 (574)
Q Consensus 350 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~ 429 (574)
|.+. .+|. ..+++|+.+++++|.+....+. ..+++|++|++++|++++.. ..+..+..+
T Consensus 314 n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~----------------~~~~~~~~~ 372 (570)
T 2z63_A 314 CKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG----------------CCSQSDFGT 372 (570)
T ss_dssp CBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEE----------------EEEHHHHTC
T ss_pred Cccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccc----------------ccccccccc
Confidence 6665 3333 3556666666666665543332 45666666666666655210 124567789
Q ss_pred CCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCC-ccccCCCCCCEEeCCCCcccccCcccccCCCCCCEee
Q 036593 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLP-SNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLS 508 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 508 (574)
++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+.++++|++|+
T Consensus 373 ~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451 (570)
T ss_dssp SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence 9999999999999855444 8899999999999999987655 5788999999999999999988888999999999999
Q ss_pred CCCCccc-ccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCC
Q 036593 509 LASNQFQ-GPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 509 l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
+++|.+. +..|..+..+++|+.|++++|++....|..|..+++|+.|++++|++++..|.
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 9999997 46888999999999999999999988899999999999999999999987654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=376.16 Aligned_cols=471 Identities=18% Similarity=0.205 Sum_probs=382.0
Q ss_pred CCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEE
Q 036593 41 HQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMS 120 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 120 (574)
.+.+++|+++++.+++..+..|.++++|++|++++|.+.+..+.+|..+++|++|++++|++.+..+..|+++++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 36899999999999988889999999999999999999888888999999999999999999988888899999999999
Q ss_pred ccCCccccc-CCcCCCCCCCCceeecccccCcccC-chhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcc
Q 036593 121 LRNNNITGP-IPNSLFNLSKLEMLQASFNVIDGNI-PSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNL 198 (574)
Q Consensus 121 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 198 (574)
+++|.+... .+..+.++++|++|++++|...+.+ +..+.++++|++|++++|.+....+..+..+++|++|+++.|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 999998853 4677999999999999999843344 46799999999999999999988899999999999999999987
Q ss_pred cccCchhhcccCCCcEEEcccCcccccC--CchhhcCCCCcCeeecccccceecC----CcCccCCCCccEEeCCCCcee
Q 036593 199 SGLIPPAIFNISTIRVLNLHSNQFSGRL--PSTIGHSLPNIEYLTLAINNLIGTI----PDSLTNASKLIGLDLGSNSFS 272 (574)
Q Consensus 199 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~ 272 (574)
.......+..+++|+.|++++|.+.+.. +..+...+++|+.|+++++.+.... ...+..+++|+.+++++|.+.
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 6443344456899999999999987432 3334446789999999998876532 233456789999999999886
Q ss_pred ecC------CCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEE
Q 036593 273 GHI------PNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFY 346 (574)
Q Consensus 273 ~~~------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 346 (574)
+.. ...+..+++++.+++.++.+....... .+.......++|+.|++++|.+..+ +..+....++++.|+
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~---~l~~~~~~~~~L~~L~l~~n~l~~i-p~~~~~~l~~L~~L~ 340 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY---DLSTVYSLLEKVKRITVENSKVFLV-PCSFSQHLKSLEFLD 340 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSC---CCCHHHHHSTTCCEEEEESSCCCCC-CHHHHHHCTTCCEEE
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcc---cchhhhhhcccceEEEeccCccccC-CHHHHhcCccccEEE
Confidence 431 233567889999999888765432110 1111133467899999999998754 444433345999999
Q ss_pred eccccccccCC---ccccCCCCCcEEECcCCCCcccCC--cCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeec
Q 036593 347 AYECKLGGSIP---KEIGNLRGLILLTLDFNDLNGTIP--TSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGH 421 (574)
Q Consensus 347 l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~ 421 (574)
+++|.+.+..+ ..+..+++|++|++++|.+++... ..+..+++|++|++++|+++ .
T Consensus 341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------~ 401 (549)
T 2z81_A 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-------------------P 401 (549)
T ss_dssp CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-------------------C
T ss_pred ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-------------------c
Confidence 99999987553 346789999999999999976532 45788999999999999887 4
Q ss_pred CCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCC
Q 036593 422 IPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGAL 501 (574)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 501 (574)
+|..+..+++|++|++++|++.. .+..+ .++|++|++++|.+.+. +..+++|++|++++|+++ .++. ...+
T Consensus 402 lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l 472 (549)
T 2z81_A 402 MPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLF 472 (549)
T ss_dssp CCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGC
T ss_pred CChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccC
Confidence 55667788999999999999873 33333 36899999999998764 257899999999999998 4444 4678
Q ss_pred CCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCC
Q 036593 502 VDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIP 543 (574)
Q Consensus 502 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 543 (574)
++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 473 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999999999998888889999999999999999876444
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-44 Score=370.72 Aligned_cols=459 Identities=21% Similarity=0.242 Sum_probs=299.1
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 124 (574)
+++++++++++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|++.+..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 58999999999 4676665 89999999999998877889999999999999999999888999999999999999999
Q ss_pred cccccCCcCCCCCCCCceeecccccCcc-cCchhccCCCCCCEEEccCCcCCcCCCccccCCCCC--CEEEccCCcc--c
Q 036593 125 NITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNL--ESLALGTNNL--S 199 (574)
Q Consensus 125 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~ 199 (574)
.+. .+|.. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+.. ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 55555 89999999999999986 467889999999999999998875 457777888 9999999988 6
Q ss_pred ccCchhhcccC-CCcEEEcccCcccccCCchhhcCCCCcCeeeccccc-------ceecCCcCccCCCCccEEeCCCCce
Q 036593 200 GLIPPAIFNIS-TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINN-------LIGTIPDSLTNASKLIGLDLGSNSF 271 (574)
Q Consensus 200 ~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~ 271 (574)
...+..+..+. ....+++++|.+.+.++......+++|+.+++++|. +....+ .+..+++|+.++++++.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 67777776654 234567778887777777666678999999998875 333333 577888899999988877
Q ss_pred eecCCCCcc---CCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhc--cccceEE
Q 036593 272 SGHIPNTFG---NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFS--ASLQSFY 346 (574)
Q Consensus 272 ~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~l~ 346 (574)
.+..+..+. ..++|++|++++|.+....... .+......++.|+.++++++.+ ......+.... .+++.++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~---~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR---DFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC---CCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccc---hhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence 643222111 2458889999888876321111 0000116778888888888877 33324443332 1366666
Q ss_pred eccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccC
Q 036593 347 AYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCL 426 (574)
Q Consensus 347 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~ 426 (574)
++++.+..... +..+++|++|++++|.+++..+..+..+++|++|++++|++++. + .+|..+
T Consensus 309 l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~---------------~~~~~~ 370 (520)
T 2z7x_B 309 VSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-S---------------KIAEMT 370 (520)
T ss_dssp EESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH-H---------------HHHHHH
T ss_pred cCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc-c---------------cchHHH
Confidence 66665542211 13555555555555555554455555555555555555554420 0 122334
Q ss_pred cCCCCCCeEECCCCeecccCC-ccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCC
Q 036593 427 ASLTSLRELRLGSNKLTSSIP-SSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLE 505 (574)
Q Consensus 427 ~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 505 (574)
..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+. ++|++|++++|++. .++..+.++++|+
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ 447 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCC
Confidence 445555555555555544222 2344445555555555555433333222 44555555555554 3333333455555
Q ss_pred EeeCCCCcccccCCc-cccCCcCCCeeeCCCCccc
Q 036593 506 TLSLASNQFQGPIPE-SVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 506 ~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~~~ 539 (574)
+|++++|+++. +|. .+..+++|+.|++++|++.
T Consensus 448 ~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 448 ELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp EEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCcCCc-cCHHHhccCCcccEEECcCCCCc
Confidence 55555555542 222 2444455555555555544
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=361.92 Aligned_cols=499 Identities=22% Similarity=0.202 Sum_probs=313.4
Q ss_pred EEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcc
Q 036593 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNI 126 (574)
Q Consensus 47 l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 126 (574)
+++++.+++ .+|..+. +++++|+|++|.+.+..+.+|.++++|++|+|++|++.++.+.+|.++++|++|+|++|++
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 445555554 2443332 3555566666555544445555566666666665555555555555566666666666555
Q ss_pred cccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcC-CCccccCCCCCCEEEccCCcccccCchh
Q 036593 127 TGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ-IPTEIGNLQNLESLALGTNNLSGLIPPA 205 (574)
Q Consensus 127 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 205 (574)
....+.+|.++++|++|++++|.+.+..+..|+++++|++|++++|.+... .+..+..+++|++|++++|.+....+..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 544444455555666666655555544334455555666666655555432 3444555555666666655555554444
Q ss_pred hcccCCC----cEEEcccCcccc-----------------------cCCchhhcCCCCcCeeeccccc------ceecCC
Q 036593 206 IFNISTI----RVLNLHSNQFSG-----------------------RLPSTIGHSLPNIEYLTLAINN------LIGTIP 252 (574)
Q Consensus 206 l~~~~~L----~~L~l~~~~~~~-----------------------~~~~~~~~~l~~L~~L~l~~~~------~~~~~~ 252 (574)
+..+.++ ..++++.+.+.. .........+..++...+.... +.....
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 4433322 234444444431 1111112223333333222111 011111
Q ss_pred cCccCCCCccEEeCCCCce---eecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCC
Q 036593 253 DSLTNASKLIGLDLGSNSF---SGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGG 329 (574)
Q Consensus 253 ~~~~~~~~L~~L~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 329 (574)
..+.....+....+..+.. .......+....+++.+.+..+.+.... .+.....++.|++.++.+..
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~----------~~~~~~~L~~L~l~~~~~~~ 342 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK----------DFSYNFGWQHLELVNCKFGQ 342 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG----------GGGSCCCCSEEEEESCEESS
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc----------ccccchhhhhhhcccccccC
Confidence 2222233333333222111 1123334555666777777666554331 24556678888888776665
Q ss_pred CCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcc--cCCcCccccCCCCeEeccCCcccccC---
Q 036593 330 ILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNG--TIPTSVGTLQQLQGLSLEDNNLEGSI--- 404 (574)
Q Consensus 330 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~--- 404 (574)
..... ...++.+.+..+...... ....+++|+.++++.|.+.. ..+..+..+.+|+.+++..+......
T Consensus 343 ~~~~~----l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~ 416 (635)
T 4g8a_A 343 FPTLK----LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNF 416 (635)
T ss_dssp CCCCB----CTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCC
T ss_pred cCccc----chhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccc
Confidence 44332 236777777776655332 24467888888888887753 23445566788888888887655422
Q ss_pred --CCCCceEEccCCeeeecCC-ccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcce-ecCCccccCCCCC
Q 036593 405 --PYDLCHLELNGNKLSGHIP-PCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN-DSLPSNVQKLKVL 480 (574)
Q Consensus 405 --~~~l~~l~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~~~~l~~L 480 (574)
...++.+++..++.....+ ..+..+++++.++++.|.+....+..+..+++|++|++++|... ...+..+..+++|
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence 2457788888877665443 45778899999999999998888888899999999999999754 3567788999999
Q ss_pred CEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccC-CCCCeEeccC
Q 036593 481 RVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEAL-SHLKQFNVSQ 559 (574)
Q Consensus 481 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~l~l~~ 559 (574)
++|++++|++.+..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++....|+.|..+ ++|+.|++++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 999999999998888899999999999999999998888889999999999999999998888889888 5899999999
Q ss_pred Ccccc
Q 036593 560 NMLEG 564 (574)
Q Consensus 560 n~~~~ 564 (574)
|++.-
T Consensus 577 Np~~C 581 (635)
T 4g8a_A 577 NDFAC 581 (635)
T ss_dssp CCBCC
T ss_pred CCCcc
Confidence 98763
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-40 Score=348.43 Aligned_cols=486 Identities=22% Similarity=0.231 Sum_probs=366.6
Q ss_pred EEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeeccccc
Q 036593 70 SLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNV 149 (574)
Q Consensus 70 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 149 (574)
+.+.++-.++ .+|..+. +++++|+|++|++++..+.+|.++++|++|++++|.+..+.+.+|.++++|++|++++|.
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 3455544443 4565443 479999999999998888999999999999999999997778889999999999999999
Q ss_pred CcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCccccc-CchhhcccCCCcEEEcccCcccccCCc
Q 036593 150 IDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL-IPPAIFNISTIRVLNLHSNQFSGRLPS 228 (574)
Q Consensus 150 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~ 228 (574)
+.+..+..|.++++|++|++++|.+....+..|+++++|++|++++|.+... .+..+..+++|++|++++|.+.+..+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 9866667899999999999999999987778899999999999999998753 567788999999999999998855555
Q ss_pred hhhcCCC----CcCeeecccccceecCCcCccCCCCccEEeCCCCceee-cCCCCccCCCcCceEEccCCccccc-----
Q 036593 229 TIGHSLP----NIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSG-HIPNTFGNLRHLNVLSIRTNNLTTE----- 298 (574)
Q Consensus 229 ~~~~~l~----~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~----- 298 (574)
.+. .+. ....++++.+.+....+..+. ...+..+++.++.... ..+..+..++.++...+..+.....
T Consensus 192 ~l~-~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 192 DLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGH-HHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred ccc-chhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 443 332 344677887777655444333 3345666666553321 1112233333333333221110000
Q ss_pred -CCC-------------------CccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCc
Q 036593 299 -SSS-------------------ADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPK 358 (574)
Q Consensus 299 -~~~-------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 358 (574)
... .........+..+.+++.+.+.++.+..... + .....++.+.+.++.+....+
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~-~~~~~L~~L~l~~~~~~~~~~- 345 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--F-SYNFGWQHLELVNCKFGQFPT- 345 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--G-GSCCCCSEEEEESCEESSCCC-
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--c-ccchhhhhhhcccccccCcCc-
Confidence 000 0000112234455677777777665543322 1 122378888888888765433
Q ss_pred cccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccC--------CCCCceEEccCCeeeecCCccCcCCC
Q 036593 359 EIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSI--------PYDLCHLELNGNKLSGHIPPCLASLT 430 (574)
Q Consensus 359 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------~~~l~~l~l~~~~l~~~~~~~~~~~~ 430 (574)
..++.|+.+++..+...... ....+++|+.++++.|.+.... ...++.+++..+.... .+..+..++
T Consensus 346 --~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~ 420 (635)
T 4g8a_A 346 --LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLE 420 (635)
T ss_dssp --CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCT
T ss_pred --ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccc
Confidence 35677888888888765432 3457899999999999876421 2468899999998874 455678899
Q ss_pred CCCeEECCCCeecccC-CccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCccc-ccCcccccCCCCCCEee
Q 036593 431 SLRELRLGSNKLTSSI-PSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS-GNIPSTIGALVDLETLS 508 (574)
Q Consensus 431 ~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~ 508 (574)
+|+.+++..+...... ...+..+++++.++++.|.+....+..+..+++|+.|++++|.+. ...+..|..+++|++|+
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~ 500 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEE
Confidence 9999999999876553 456788999999999999999888889999999999999999854 45677899999999999
Q ss_pred CCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCC
Q 036593 509 LASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVK 569 (574)
Q Consensus 509 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~ 569 (574)
|++|++.+..|..|.++++|+.|+|++|++....+..|..+++|+.|++++|++++..|..
T Consensus 501 Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred CCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 9999999888999999999999999999999888888999999999999999999988764
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-41 Score=359.08 Aligned_cols=437 Identities=21% Similarity=0.245 Sum_probs=337.1
Q ss_pred CCCcEEEccCCcccccCchhhcCCCCCCEEEc-cCCcCccCCCccccCC-CCCCEEE---c------------cCCccc-
Q 036593 66 SFLMSLDVTLNNFYGHLPNELGKLGRLKFISF-SFNKLSGSIPTWIGVL-SKLQIMS---L------------RNNNIT- 127 (574)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~l-~~L~~L~---l------------~~~~~~- 127 (574)
.+++.|+|+++.+.+.+|..++++++|++|+| ++|.+.+..+...... ..+.... + ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 7777665533211111 0000000 0 000000
Q ss_pred ----------ccCCcCCCCCCCCceeeccc--ccCcccCchhccCCCCCCEEEccCCcCCc-----------------CC
Q 036593 128 ----------GPIPNSLFNLSKLEMLQASF--NVIDGNIPSGIGNLSNLFDLDLRHNNLQD-----------------QI 178 (574)
Q Consensus 128 ----------~~~~~~~~~l~~L~~L~l~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----------------~~ 178 (574)
...+........++.+.+.. |.+.+ +|..++++++|++|++++|.++. ..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00011112233444444443 66765 88899999999999999999987 27
Q ss_pred Ccccc--CCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCc-ccc-cCCchhh------cCCCCcCeeecccccce
Q 036593 179 PTEIG--NLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQ-FSG-RLPSTIG------HSLPNIEYLTLAINNLI 248 (574)
Q Consensus 179 ~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~------~~l~~L~~L~l~~~~~~ 248 (574)
|..+. ++++|+.|++++|.+.+..|..+..+++|+.|++++|. +.+ .+|..+. ..+++|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88877 99999999999999998999999999999999999998 876 6776554 24569999999999998
Q ss_pred ecCCc--CccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCC-CcEEEccCC
Q 036593 249 GTIPD--SLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRK-LSYLVLDSN 325 (574)
Q Consensus 249 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~ 325 (574)
..+. .+..+++|++|++++|.+. ..| .+..+++|+.|++++|.+... +..+..+++ |+.|++++|
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~l---------p~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEI---------PEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCC---------CTTSCEECTTCCEEECCSS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccc---------hHHHhhccccCCEEECcCC
Confidence 6676 7999999999999999998 666 899999999999999998843 344778888 999999999
Q ss_pred CCCCCCChhhhhhccccceEEeccccccccCCccccCC--CCCcEEECcCCCCcccCCcC---cc--ccCCCCeEeccCC
Q 036593 326 PLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNL--RGLILLTLDFNDLNGTIPTS---VG--TLQQLQGLSLEDN 398 (574)
Q Consensus 326 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~ 398 (574)
.++.+ |..+..+ ++|+.|++++|.+.+..+.. +. .+++|++|++++|
T Consensus 630 ~L~~l--------------------------p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 630 KLKYI--------------------------PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp CCCSC--------------------------CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred CCCcC--------------------------chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 88732 2233333 45889999999887654322 22 3457888888888
Q ss_pred cccccCCCCCceEEccCCeeeecCCcc-CcCCCCCCeEECCCCeecccCCccccC-------CCCCCeEeCCCCcceecC
Q 036593 399 NLEGSIPYDLCHLELNGNKLSGHIPPC-LASLTSLRELRLGSNKLTSSIPSSLWS-------LEYILEINLSSNSLNDSL 470 (574)
Q Consensus 399 ~~~~~~~~~l~~l~l~~~~l~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~-------~~~L~~L~L~~~~l~~~~ 470 (574)
+++ .+|.. +..+++|+.|++++|++.......+.. +++|++|+|++|.+. .+
T Consensus 684 ~L~-------------------~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 684 EIQ-------------------KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp CCC-------------------SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred cCC-------------------ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence 877 33333 457899999999999998333333332 239999999999998 56
Q ss_pred Ccccc--CCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCC------CcccccCCccccCCcCCCeeeCCCCcccccC
Q 036593 471 PSNVQ--KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLAS------NQFQGPIPESVGSLISLESLDLSGNNFSGKI 542 (574)
Q Consensus 471 ~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~------n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 542 (574)
|..+. .+++|+.|++++|.+.+ ++..+.++++|+.|+|++ |.+.+..|..+..+++|+.|++++|++. .+
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~I 821 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KV 821 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-cc
Confidence 66676 89999999999999996 677888999999999976 7788889999999999999999999995 77
Q ss_pred CcCcccCCCCCeEeccCCccccc
Q 036593 543 PKSLEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 543 ~~~l~~l~~L~~l~l~~n~~~~~ 565 (574)
|..+. ++|+.|++++|++...
T Consensus 822 p~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 822 DEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CSCCC--SSSCEEECCSCTTCEE
T ss_pred CHhhc--CCCCEEECCCCCCCcc
Confidence 87765 6999999999998654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=362.63 Aligned_cols=435 Identities=19% Similarity=0.260 Sum_probs=344.3
Q ss_pred CCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCc------c------CCCccccCCCCCCEEEccCCcccccCCcC
Q 036593 66 SFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLS------G------SIPTWIGVLSKLQIMSLRNNNITGPIPNS 133 (574)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 133 (574)
.+++.|+|+++.+.+.+|.+++++++|++|++++|.+. + .+|... +.+|+ ++++++.+....+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 58899999999999999999999999999999999752 1 122222 33455 566555554443333
Q ss_pred CC-------------------CCCCCceeecc--cccCcccCchhccCCCCCCEEEccCCcCCcC---------------
Q 036593 134 LF-------------------NLSKLEMLQAS--FNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ--------------- 177 (574)
Q Consensus 134 ~~-------------------~l~~L~~L~l~--~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--------------- 177 (574)
+. ....++.+.+. .|.+++ +|..++++++|++|++++|.++..
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 33 11222333332 456776 888899999999999999998864
Q ss_pred --CCcccc--CCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCc-ccc-cCCchhhc-----CCCCcCeeeccccc
Q 036593 178 --IPTEIG--NLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQ-FSG-RLPSTIGH-----SLPNIEYLTLAINN 246 (574)
Q Consensus 178 --~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~-----~l~~L~~L~l~~~~ 246 (574)
.|..+. ++++|++|++++|.+.+..|..+.++++|++|++++|. +.+ .+|..+.. .+++|+.|++++|.
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 788888 99999999999999988999999999999999999998 886 67877762 23899999999998
Q ss_pred ceecCCc--CccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCC-CcEEEcc
Q 036593 247 LIGTIPD--SLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRK-LSYLVLD 323 (574)
Q Consensus 247 ~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~ 323 (574)
+. ..+. .+..+++|++|++++|.+.+..| .+..+++|+.|++++|.+... +..+..+++ |++|+++
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~l---------p~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI---------PANFCGFTEQVENLSFA 385 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEEC---------CTTSEEECTTCCEEECC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccc---------cHhhhhhcccCcEEEcc
Confidence 88 5666 78889999999999999886677 788899999999999988743 334677777 8888888
Q ss_pred CCCCCCCCChhhhhhccccceEEeccccccccCCccccC--CCCCcEEECcCCCCcccCCcCcc-------ccCCCCeEe
Q 036593 324 SNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGN--LRGLILLTLDFNDLNGTIPTSVG-------TLQQLQGLS 394 (574)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~ 394 (574)
+|.++. +|..+.. +++|++|++++|.+.+..+..+. .+++|++|+
T Consensus 386 ~N~l~~--------------------------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 386 HNKLKY--------------------------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp SSCCSS--------------------------CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCcCcc--------------------------cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 887662 3333433 34899999999999988777777 677888888
Q ss_pred ccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCC-------CCCeEeCCCCcce
Q 036593 395 LEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLE-------YILEINLSSNSLN 467 (574)
Q Consensus 395 l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-------~L~~L~L~~~~l~ 467 (574)
+++|+++. ..+..+..+++|++|++++|+++......+.... +|++|++++|.+.
T Consensus 440 Ls~N~l~~------------------lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 440 LSNNQISK------------------FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp CCSSCCCS------------------CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred CcCCccCc------------------CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 88888772 2223456789999999999999844444444333 9999999999998
Q ss_pred ecCCcccc--CCCCCCEEeCCCCcccccCcccccCCCCCCEeeC------CCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 468 DSLPSNVQ--KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSL------ASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 468 ~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l------~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
.+|..+. .+++|+.|++++|++.+ +|..+.++++|++|++ ++|.+.+..|..+..+++|+.|++++|+++
T Consensus 502 -~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 502 -KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp -BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred -ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence 5666665 89999999999999996 7788899999999999 567788899999999999999999999995
Q ss_pred ccCCcCcccCCCCCeEeccCCcccc
Q 036593 540 GKIPKSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 540 ~~~~~~l~~l~~L~~l~l~~n~~~~ 564 (574)
.+|..+. ++|+.|++++|++..
T Consensus 580 -~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 580 -KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp -BCCSCCC--TTCCEEECCSCTTCE
T ss_pred -ccCHhHh--CcCCEEECcCCCCcc
Confidence 6777765 899999999998764
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=350.97 Aligned_cols=460 Identities=20% Similarity=0.231 Sum_probs=283.8
Q ss_pred EEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccC
Q 036593 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRN 123 (574)
Q Consensus 44 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 123 (574)
.++++++++++++ +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|++.+..|.+|.++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 4899999999995 666554 8999999999999887788999999999999999999988899999999999999999
Q ss_pred CcccccCCcCCCCCCCCceeecccccCcc-cCchhccCCCCCCEEEccCCcCCcCCCccccCCCCC--CEEEccCCcc--
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNL--ESLALGTNNL-- 198 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~-- 198 (574)
|.+. .+|.. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+... .+..+++| ++|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 9998 55655 89999999999999985 3457899999999999999988753 45555555 9999999988
Q ss_pred cccCchhhcccC-CCcEEEcccCcccccCCchhhcCCCCcCeeecccccce----ecCCcCccCCCCccEEeCCCCceee
Q 036593 199 SGLIPPAIFNIS-TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLI----GTIPDSLTNASKLIGLDLGSNSFSG 273 (574)
Q Consensus 199 ~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~ 273 (574)
....+..+..+. ..-.+++++|.+.+..+......+++|+.+++++|... ......+..++.|+.+++.++.+.+
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 667777776654 12245777777776666666667788888888876411 1112345667777777777666543
Q ss_pred cCCCC---ccCCCcCceEEccCCccccc-CCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhc--cccceEEe
Q 036593 274 HIPNT---FGNLRHLNVLSIRTNNLTTE-SSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFS--ASLQSFYA 347 (574)
Q Consensus 274 ~~~~~---l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~l~l 347 (574)
..... ....++|++|++++|.+... +... +......++.|+.+++..+.+ ......+.... .+++.+++
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~----~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREE----FTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC----CCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEE
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchh----hhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEc
Confidence 21100 11234788888888877632 2111 000014455555555555554 22222222221 23555555
Q ss_pred ccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCc
Q 036593 348 YECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLA 427 (574)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~ 427 (574)
+++.+..... ...+++|++|++++|.+++..+..+..+++|++|++++|++++.. ..+..+.
T Consensus 339 ~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------~~~~~~~ 400 (562)
T 3a79_B 339 SDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF----------------KVALMTK 400 (562)
T ss_dssp ESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT----------------HHHHTTT
T ss_pred cCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc----------------cchhhhc
Confidence 5555432111 134555555555555555544555555555555555555544210 1123344
Q ss_pred CCCCCCeEECCCCeeccc-CCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCE
Q 036593 428 SLTSLRELRLGSNKLTSS-IPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLET 506 (574)
Q Consensus 428 ~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 506 (574)
.+++|++|++++|++.+. ....+..+++|++|++++|.+.+..+..+. ++|++|++++|+++ .++..+.++++|++
T Consensus 401 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQE 477 (562)
T ss_dssp TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSE
T ss_pred CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCE
Confidence 555555555555555542 222344455555555555555433332222 35555555555554 23333334555555
Q ss_pred eeCCCCcccccCCcc-ccCCcCCCeeeCCCCccc
Q 036593 507 LSLASNQFQGPIPES-VGSLISLESLDLSGNNFS 539 (574)
Q Consensus 507 L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~~~ 539 (574)
|++++|+++ .+|.. +..+++|+.|++++|++.
T Consensus 478 L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 478 LNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp EECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred EECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 555555555 22322 445555555555555544
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=343.50 Aligned_cols=459 Identities=21% Similarity=0.260 Sum_probs=328.1
Q ss_pred cEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccc
Q 036593 69 MSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFN 148 (574)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 148 (574)
++|++++|.+. .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 67999999987 5676555 89999999999999888888999999999999999998777888999999999999999
Q ss_pred cCcccCchhccCCCCCCEEEccCCcCCc-CCCccccCCCCCCEEEccCCcccccCchhhcccCCC--cEEEcccCcc--c
Q 036593 149 VIDGNIPSGIGNLSNLFDLDLRHNNLQD-QIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTI--RVLNLHSNQF--S 223 (574)
Q Consensus 149 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~ 223 (574)
.+. .+|.. .+++|++|++++|.+.. ..|..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 987 55654 78999999999998876 356788999999999999988765 456677777 8888888887 5
Q ss_pred ccCCchhhcCCC-CcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCC
Q 036593 224 GRLPSTIGHSLP-NIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSA 302 (574)
Q Consensus 224 ~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 302 (574)
+..|..+. .+. ....++++++.+.... ....+..+++|+.+++++|...... .
T Consensus 154 ~~~~~~l~-~l~~~~l~l~l~~n~~~~~~-----------------------~~~~~~~l~~L~~L~l~~n~~~~~~--~ 207 (520)
T 2z7x_B 154 KEDPEGLQ-DFNTESLHIVFPTNKEFHFI-----------------------LDVSVKTVANLELSNIKCVLEDNKC--S 207 (520)
T ss_dssp SCCTTTTT-TCCEEEEEEECCSSSCCCCC-----------------------CCCCCTTCSEEEECCEEECCSTTTT--H
T ss_pred cccccccc-ccccceEEEEeccCcchhhh-----------------------hhhhhhcccceeecccccccccccc--c
Confidence 45554433 222 1223334444332211 1122334444444444444300000 0
Q ss_pred ccccccccccCCCCCcEEEccCCCCCCCCChhhhh--hccccceEEeccccccccCCccc-----cCCCCCcEEECcCCC
Q 036593 303 DQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGN--FSASLQSFYAYECKLGGSIPKEI-----GNLRGLILLTLDFND 375 (574)
Q Consensus 303 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~ 375 (574)
........+..+++|+.|+++++.+++........ ..++++.+++++|.+.+.+|..+ ..+++|+.++++.|.
T Consensus 208 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~ 287 (520)
T 2z7x_B 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287 (520)
T ss_dssp HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred eeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence 00001123445555555555554443221111110 11256666666666665566655 677777777777777
Q ss_pred CcccCCcCcccc---CCCCeEeccCCcccccC----CCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecc--cC
Q 036593 376 LNGTIPTSVGTL---QQLQGLSLEDNNLEGSI----PYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS--SI 446 (574)
Q Consensus 376 ~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~----~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~ 446 (574)
+ ......+..+ .+|++|++++|++.... ...+++|++++|.+++..+..+..+++|++|++++|++.+ ..
T Consensus 288 ~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 366 (520)
T 2z7x_B 288 F-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366 (520)
T ss_dssp C-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred e-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc
Confidence 6 2222333333 56777777777766432 2467778888888877788889999999999999999986 34
Q ss_pred CccccCCCCCCeEeCCCCcceecCC-ccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCC
Q 036593 447 PSSLWSLEYILEINLSSNSLNDSLP-SNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL 525 (574)
Q Consensus 447 ~~~~~~~~~L~~L~L~~~~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~ 525 (574)
+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+. ++|++|++++|+++ .+|..+..+
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l 443 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKL 443 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGC
T ss_pred hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcC
Confidence 5678899999999999999987444 4578899999999999999866665543 79999999999999 788877799
Q ss_pred cCCCeeeCCCCcccccCCc-CcccCCCCCeEeccCCccccccC
Q 036593 526 ISLESLDLSGNNFSGKIPK-SLEALSHLKQFNVSQNMLEGEIP 567 (574)
Q Consensus 526 ~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~l~l~~n~~~~~~p 567 (574)
++|+.|++++|++.. +|. .|..+++|++|++++|+++...|
T Consensus 444 ~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 444 EALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 999999999999995 555 48999999999999999987654
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-38 Score=318.91 Aligned_cols=393 Identities=18% Similarity=0.178 Sum_probs=214.8
Q ss_pred CEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcc-cCchhccCCCCCCEEEccC
Q 036593 93 KFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDG-NIPSGIGNLSNLFDLDLRH 171 (574)
Q Consensus 93 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~ 171 (574)
+.++.+++.+. .+|. + .++|++|++++|.+.+..+..+.++++|++|++++|.+.+ ..+..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45666666666 4444 2 2678888888888876667778888888888888877653 3355677778888888888
Q ss_pred CcCCcCCCccccCCCCCCEEEccCCcccccCchh--hcccCCCcEEEcccCcccccCCchhhcCCCCcCeeeccccccee
Q 036593 172 NNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPA--IFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIG 249 (574)
Q Consensus 172 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 249 (574)
|.+....+..+.++++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..|..++..+++|++|++++|.+.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~- 167 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK- 167 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS-
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc-
Confidence 7777666777777777777777777776533333 6666777777777776664444443334555555555554444
Q ss_pred cCCcCccCCCCccEEeCCCCceeecCCCCccCC--CcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCC
Q 036593 250 TIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL--RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327 (574)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 327 (574)
...+..+..+ ++|+.+++++|.+.........+.....+..+++|++|++++|.+
T Consensus 168 -----------------------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 168 -----------------------SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp -----------------------CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred -----------------------ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence 3333334333 455555555555544332221112222234456666666666666
Q ss_pred CCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCC
Q 036593 328 GGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYD 407 (574)
Q Consensus 328 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 407 (574)
++..+..+... ...++|+.+++++|...+... ..+.+.+
T Consensus 225 ~~~~~~~~~~~----------------------~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~----- 263 (455)
T 3v47_A 225 KESMAKRFFDA----------------------IAGTKIQSLILSNSYNMGSSF--------------GHTNFKD----- 263 (455)
T ss_dssp CHHHHHHHHHH----------------------TTTCCEEEEECTTCTTTSCCT--------------TCCSSCC-----
T ss_pred cccchhhhhcc----------------------ccccceeeEeecccccccccc--------------chhhhcc-----
Confidence 54333333221 112445555555544322100 0000000
Q ss_pred CceEEccCCeeeecCCccCc--CCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeC
Q 036593 408 LCHLELNGNKLSGHIPPCLA--SLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDL 485 (574)
Q Consensus 408 l~~l~l~~~~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l 485 (574)
..+..+. ..++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 264 -------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 330 (455)
T 3v47_A 264 -------------PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330 (455)
T ss_dssp -------------CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred -------------CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence 0001111 1244555555555555444555555555555555555555544555555555555555
Q ss_pred CCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccc
Q 036593 486 SRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 486 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~ 565 (574)
++|.+.+..+..+.++++|++|++++|++++..+..|..+++|+.|++++|++....+..|..+++|+.|++++|++++.
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 55555544445555555555555555555555455555555555555555555544444455555555555555555555
Q ss_pred cC
Q 036593 566 IP 567 (574)
Q Consensus 566 ~p 567 (574)
.|
T Consensus 411 ~~ 412 (455)
T 3v47_A 411 CP 412 (455)
T ss_dssp TT
T ss_pred CC
Confidence 55
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=314.19 Aligned_cols=386 Identities=20% Similarity=0.221 Sum_probs=247.2
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCcc-CCCccccCCCCCCEEEccCC
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSG-SIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~ 124 (574)
.+++++.+++ .+|. +. ++|++|+|++|.+.+..+..|.++++|++|++++|.+.+ ..+..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 5677777776 4555 33 789999999999988778889999999999999998863 44678999999999999999
Q ss_pred cccccCCcCCCCCCCCceeecccccCcccCchh--ccCCCCCCEEEccCCcCCcCCCcc-ccCCCCCCEEEccCCccccc
Q 036593 125 NITGPIPNSLFNLSKLEMLQASFNVIDGNIPSG--IGNLSNLFDLDLRHNNLQDQIPTE-IGNLQNLESLALGTNNLSGL 201 (574)
Q Consensus 125 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~ 201 (574)
.+.+..|..+.++++|++|++++|.+.+..+.. +.++++|++|++++|.+....+.. +..+++|++|++++|.+...
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 988777888999999999999999887544444 788889999999998888766655 78888888888888888777
Q ss_pred Cchhhccc--CCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCc
Q 036593 202 IPPAIFNI--STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTF 279 (574)
Q Consensus 202 ~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 279 (574)
.+..+..+ .+|+.|+++++.+.+..+..+. . .....+..+++|++|++++|.+.+..+..+
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~------------~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG------------W-----EKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT------------H-----HHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred ChhhhhccccccccccccccCcccccchhhcc------------c-----cccccccccceeeeEecCCCcccccchhhh
Confidence 66666655 5677777777765522111110 0 000112344566666666666654444433
Q ss_pred cCC---CcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccC
Q 036593 280 GNL---RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSI 356 (574)
Q Consensus 280 ~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 356 (574)
... ++|+.|++++|........ .+.+... .
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~~----------------------~~~~~~~-------------------------~ 265 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSFG----------------------HTNFKDP-------------------------D 265 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCTT----------------------CCSSCCC-------------------------C
T ss_pred hccccccceeeEeeccccccccccc----------------------hhhhccC-------------------------c
Confidence 322 4555555555543321100 0001100 0
Q ss_pred Ccccc--CCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCe
Q 036593 357 PKEIG--NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRE 434 (574)
Q Consensus 357 ~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~ 434 (574)
+..+. ..++|+.+++++|.+.+..+..+..+++|++|++++|++++ ..+..+..+++|++
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK------------------IDDNAFWGLTHLLK 327 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE------------------ECTTTTTTCTTCCE
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc------------------cChhHhcCcccCCE
Confidence 00011 22456666666666665555556666666666666665553 23344555666666
Q ss_pred EECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcc
Q 036593 435 LRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQF 514 (574)
Q Consensus 435 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 514 (574)
|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++....+..+..+++|++|++++|++
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 66666666555555566666666666666666555555566666666666666666554444555666666666666666
Q ss_pred ccc
Q 036593 515 QGP 517 (574)
Q Consensus 515 ~~~ 517 (574)
.+.
T Consensus 408 ~~~ 410 (455)
T 3v47_A 408 DCS 410 (455)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-38 Score=326.70 Aligned_cols=460 Identities=21% Similarity=0.270 Sum_probs=315.2
Q ss_pred CCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCcee
Q 036593 64 NLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEML 143 (574)
Q Consensus 64 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 143 (574)
.+...++++++++.+.+ +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+.+..|.+|.++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 34455899999999874 676554 899999999999998888899999999999999999997778889999999999
Q ss_pred ecccccCcccCchhccCCCCCCEEEccCCcCCcC-CCccccCCCCCCEEEccCCcccccCchhhcccCCC--cEEEcccC
Q 036593 144 QASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ-IPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTI--RVLNLHSN 220 (574)
Q Consensus 144 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~ 220 (574)
++++|.+. .+|.. .+++|++|++++|.+... .+..+.++++|++|++++|.+... .+..+++| +.|++++|
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 99999998 56655 899999999999998864 357899999999999999988753 45555666 99999988
Q ss_pred cc--cccCCchhhcCCC-CcCeeecccccceecCC-cCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCccc
Q 036593 221 QF--SGRLPSTIGHSLP-NIEYLTLAINNLIGTIP-DSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLT 296 (574)
Q Consensus 221 ~~--~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 296 (574)
.+ .+..+..+. .+. ..-.++++.|.+....+ ..+..+++|+.+++++|. ..
T Consensus 180 ~l~~~~~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~------------------------~~ 234 (562)
T 3a79_B 180 SYHIKGGETESLQ-IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND------------------------EN 234 (562)
T ss_dssp SCCCCSSSCCEEE-ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS------------------------TT
T ss_pred cccccccCccccc-ccCcceEEEEecCccchhhhhhhcccccceEEEecccccc------------------------cc
Confidence 87 545554443 222 11123444443332111 122334445555555442 10
Q ss_pred ccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhh--hccccceEEeccccccccCCccc-----cCCCCCcEE
Q 036593 297 TESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGN--FSASLQSFYAYECKLGGSIPKEI-----GNLRGLILL 369 (574)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~-----~~l~~L~~L 369 (574)
... .......+..++.|+.+++.++.+.+........ ...+++++++++|.+.+.+|..+ ..++.|+.+
T Consensus 235 ~~~----l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~ 310 (562)
T 3a79_B 235 CQR----LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310 (562)
T ss_dssp HHH----HHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEE
T ss_pred cch----HHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehh
Confidence 000 0001122334444444444443332111100000 01155555555555554444444 444555555
Q ss_pred ECcCCCCcccCC-cCcc---ccCCCCeEeccCCccccc----CCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCe
Q 036593 370 TLDFNDLNGTIP-TSVG---TLQQLQGLSLEDNNLEGS----IPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNK 441 (574)
Q Consensus 370 ~l~~~~~~~~~~-~~~~---~~~~L~~L~l~~~~~~~~----~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 441 (574)
++..+.+ ..+ ..+. ...+|++|++++|++... ....++++++++|.+++..+..+..+++|++|++++|+
T Consensus 311 ~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 311 HVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp EEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred hccccee--ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 5544444 111 1111 124566666666665432 22456677777777776777888999999999999999
Q ss_pred eccc--CCccccCCCCCCeEeCCCCccee-cCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccC
Q 036593 442 LTSS--IPSSLWSLEYILEINLSSNSLND-SLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI 518 (574)
Q Consensus 442 ~~~~--~~~~~~~~~~L~~L~L~~~~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 518 (574)
+++. .+..+..+++|++|++++|.+.+ .....+..+++|++|++++|.+.+..+..+. ++|++|++++|+++ .+
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~i 465 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SI 465 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CC
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-cc
Confidence 9853 34568899999999999999987 4445688899999999999999865554443 79999999999999 67
Q ss_pred CccccCCcCCCeeeCCCCcccccCCcC-cccCCCCCeEeccCCccccccC
Q 036593 519 PESVGSLISLESLDLSGNNFSGKIPKS-LEALSHLKQFNVSQNMLEGEIP 567 (574)
Q Consensus 519 ~~~l~~~~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~l~l~~n~~~~~~p 567 (574)
|..+..+++|+.|++++|+++. +|.. |..+++|+.+++++|++.+..|
T Consensus 466 p~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 466 PKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred ChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 7776799999999999999994 5554 9999999999999999987654
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=297.21 Aligned_cols=418 Identities=22% Similarity=0.295 Sum_probs=174.4
Q ss_pred CcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEc
Q 036593 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 121 (574)
.++++++++++.+ +.+|+.+.++++|++|++++|.+.+.+|..++++.+|+++++.+|.. .++++|++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 4566677777666 46666677777777777777766666666666666543222222211 22355555
Q ss_pred cCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCccccc
Q 036593 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL 201 (574)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 201 (574)
++|.+. ..|.. .++|++|++++|.+.+ +|.. +++|++|++++|.+... +. + .++|++|++++|.+..
T Consensus 79 ~~~~l~-~lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~-~--~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 79 NNLGLS-SLPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp TTSCCS-CCCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEECCSSCCSS-
T ss_pred cCCccc-cCCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cC-C--CCCCCEEECcCCCCCC-
Confidence 555544 22221 2455555555555542 3321 24555555555554421 11 0 1455555555555553
Q ss_pred CchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccC
Q 036593 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281 (574)
Q Consensus 202 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 281 (574)
+| .+..+++|++|++++|.+. .+|. ..++|++|++++|.+.. .+ .+..+++|++|++++|.+.+ .+..
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~-~lp~----~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--- 213 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--- 213 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---
T ss_pred Cc-ccCCCCCCCEEECCCCcCc-ccCC----CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---
Confidence 33 3555555666666555554 2332 12355555555555543 22 35555666666666665542 2221
Q ss_pred CCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCcccc
Q 036593 282 LRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIG 361 (574)
Q Consensus 282 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 361 (574)
.++|+.|++++|.+...+ .+..+++|++|++++|.++... .
T Consensus 214 ~~~L~~L~l~~n~l~~lp----------~~~~l~~L~~L~l~~N~l~~l~--------------------------~--- 254 (454)
T 1jl5_A 214 PLSLESIVAGNNILEELP----------ELQNLPFLTTIYADNNLLKTLP--------------------------D--- 254 (454)
T ss_dssp CTTCCEEECCSSCCSSCC----------CCTTCTTCCEEECCSSCCSSCC--------------------------S---
T ss_pred cCcccEEECcCCcCCccc----------ccCCCCCCCEEECCCCcCCccc--------------------------c---
Confidence 135666666666555321 1445566666666666554321 1
Q ss_pred CCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccc--cCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCC
Q 036593 362 NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG--SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGS 439 (574)
Q Consensus 362 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 439 (574)
.+++|++|++++|.+.+. +. ..++|++|++++|++++ ..|..++.+++++|.+++. +. ..++|++|++++
T Consensus 255 ~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~ 326 (454)
T 1jl5_A 255 LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSN 326 (454)
T ss_dssp CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCS
T ss_pred cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCC
Confidence 113445555555544431 11 12445555555555544 3344455555555544431 11 124677777777
Q ss_pred CeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccc--cCcccccCCCCCCEeeCCCCccccc
Q 036593 440 NKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSG--NIPSTIGALVDLETLSLASNQFQGP 517 (574)
Q Consensus 440 n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~ 517 (574)
|++.+ .+.. +++|++|++++|.+.. +|. .+++|++|++++|++.+ ..|..+ ..|. .|...+.
T Consensus 327 N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l------~~L~--~n~~~~~ 390 (454)
T 1jl5_A 327 NKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESV------EDLR--MNSHLAE 390 (454)
T ss_dssp SCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTC------CEEE--CCC----
T ss_pred Ccccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHH------Hhhh--hcccccc
Confidence 77764 3332 4677777777777653 333 35677777777777764 233322 2222 2333333
Q ss_pred CCccccCCcCCCeeeCCCCcccc--cCCcCcccCCCCCeEeccCCccccccCC
Q 036593 518 IPESVGSLISLESLDLSGNNFSG--KIPKSLEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 518 ~~~~l~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
.|. .+++|+.|++++|++.+ .+| ++++.|++.+|.+.+.+|.
T Consensus 391 i~~---~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 391 VPE---LPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp -----------------------------------------------------
T ss_pred ccc---ccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCcccc
Confidence 333 23678888888888874 222 3577778888888777663
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=299.11 Aligned_cols=390 Identities=25% Similarity=0.312 Sum_probs=172.6
Q ss_pred CCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceee
Q 036593 65 LSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQ 144 (574)
Q Consensus 65 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 144 (574)
.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..++++.+|+.+++++|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 35666666666666 56666666666666666666666666666666666666655555431 3456677
Q ss_pred cccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccc
Q 036593 145 ASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224 (574)
Q Consensus 145 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 224 (574)
++++.+.+ +|. -.++|++|++++|.+.. .+.. .++|++|++++|.+... +. + .++|++|++++|.+.
T Consensus 78 l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~-~--~~~L~~L~L~~n~l~- 144 (454)
T 1jl5_A 78 LNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGVSNNQLE- 144 (454)
T ss_dssp CTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEECCSSCCS-
T ss_pred ecCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cC-C--CCCCCEEECcCCCCC-
Confidence 77766652 333 12566777776666654 2321 35666666666655432 11 0 145666666665555
Q ss_pred cCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCcc
Q 036593 225 RLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQ 304 (574)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 304 (574)
.+| .+ ..+++|++|++++|.+.. .+.. .++|++|++++|.+.. .+ .+.
T Consensus 145 ~lp-~~-~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~------------------------ 192 (454)
T 1jl5_A 145 KLP-EL-QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQ------------------------ 192 (454)
T ss_dssp SCC-CC-TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCT------------------------
T ss_pred CCc-cc-CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-ccc------------------------
Confidence 244 22 245555555555554432 1111 1244444444444442 22 244
Q ss_pred ccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCc
Q 036593 305 WSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSV 384 (574)
Q Consensus 305 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 384 (574)
.+++|++|++++|.+++... .+.+++.+++++|.+. .+| .+..+++|++|++++|.+++.. .
T Consensus 193 --------~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~-~-- 254 (454)
T 1jl5_A 193 --------NLPFLTAIYADNNSLKKLPD-----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLP-D-- 254 (454)
T ss_dssp --------TCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC-S--
T ss_pred --------CCCCCCEEECCCCcCCcCCC-----CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccc-c--
Confidence 44455555555544443211 1124455555555444 344 3677888888888888877532 2
Q ss_pred cccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCC
Q 036593 385 GTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSN 464 (574)
Q Consensus 385 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~ 464 (574)
..++|++|++++|++++ + |.. +++|++|++++|.+++. +. ..++|++|++++|
T Consensus 255 -~~~~L~~L~l~~N~l~~-l------------------~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N 307 (454)
T 1jl5_A 255 -LPPSLEALNVRDNYLTD-L------------------PEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSN 307 (454)
T ss_dssp -CCTTCCEEECCSSCCSC-C------------------CCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSS
T ss_pred -cccccCEEECCCCcccc-c------------------Ccc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCC
Confidence 23678888888887764 1 111 23455555555544421 10 0134555555555
Q ss_pred cceecCCccccCC-CCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccc--c
Q 036593 465 SLNDSLPSNVQKL-KVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG--K 541 (574)
Q Consensus 465 ~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~--~ 541 (574)
.+.+.. .+ ++|++|++++|++.+ .+.. +++|++|++++|.++ .+|. .+++|+.|++++|++.. .
T Consensus 308 ~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ 374 (454)
T 1jl5_A 308 EIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPD 374 (454)
T ss_dssp CCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCC
T ss_pred cCCccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCC
Confidence 443311 11 345555555555442 2211 345555555555554 2333 23455555555555544 3
Q ss_pred CCcCcccC-------------CCCCeEeccCCcccc--ccCCC
Q 036593 542 IPKSLEAL-------------SHLKQFNVSQNMLEG--EIPVK 569 (574)
Q Consensus 542 ~~~~l~~l-------------~~L~~l~l~~n~~~~--~~p~~ 569 (574)
+|..+..+ ++|+.|++++|++++ .+|..
T Consensus 375 ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp CCTTCCEEECCC-------------------------------
T ss_pred ChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence 44444444 899999999999998 89865
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=290.79 Aligned_cols=366 Identities=21% Similarity=0.214 Sum_probs=227.6
Q ss_pred CcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCc
Q 036593 76 NNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIP 155 (574)
Q Consensus 76 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 155 (574)
.......+..++++++|++|++++|.+.+. | .+..+++|++|++++|.+.+. + +..+++|++|++++|.+.+. +
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C
T ss_pred cCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e
Confidence 333344455688889999999999888854 4 688889999999999888743 3 77888888888888888743 3
Q ss_pred hhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCC
Q 036593 156 SGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLP 235 (574)
Q Consensus 156 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 235 (574)
++++++|++|++++|.+... + +..+++|++|++++|.+... .+..+++|++|++++|...+.++ + ..++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~-~~l~ 170 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--V-TPQT 170 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--C-TTCT
T ss_pred --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--c-ccCC
Confidence 77888888888888877753 2 77778888888888877653 25667777777777764332321 1 1344
Q ss_pred CcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCC
Q 036593 236 NIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCR 315 (574)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (574)
+|+.|++++| .++.. + +..+++|+.|++++|.++..+ +..++
T Consensus 171 ~L~~L~ls~n------------------------~l~~l-~--l~~l~~L~~L~l~~N~l~~~~-----------l~~l~ 212 (457)
T 3bz5_A 171 QLTTLDCSFN------------------------KITEL-D--VSQNKLLNRLNCDTNNITKLD-----------LNQNI 212 (457)
T ss_dssp TCCEEECCSS------------------------CCCCC-C--CTTCTTCCEEECCSSCCSCCC-----------CTTCT
T ss_pred cCCEEECCCC------------------------cccee-c--cccCCCCCEEECcCCcCCeec-----------cccCC
Confidence 4555555444 44321 1 444455555555555544321 34445
Q ss_pred CCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEec
Q 036593 316 KLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSL 395 (574)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 395 (574)
+|++|++++|.++++ | +..+++|+.|++++|.+++.. ...+++|+.|++
T Consensus 213 ~L~~L~Ls~N~l~~i--------------------------p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l 261 (457)
T 3bz5_A 213 QLTFLDCSSNKLTEI--------------------------D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHC 261 (457)
T ss_dssp TCSEEECCSSCCSCC--------------------------C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEEC
T ss_pred CCCEEECcCCccccc--------------------------C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEec
Confidence 555555555544421 1 334455555555555554432 234455555555
Q ss_pred cCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCcccc
Q 036593 396 EDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQ 475 (574)
Q Consensus 396 ~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 475 (574)
+.+++ +.+++++|.+.+.+| +..+++|+.|++++|...+..+. ..++|+.|++++|
T Consensus 262 ~~n~L--------~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~----------- 317 (457)
T 3bz5_A 262 IQTDL--------LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN----------- 317 (457)
T ss_dssp TTCCC--------SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-----------
T ss_pred cCCCC--------CEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-----------
Confidence 54432 244445554443443 45678888888888876544442 2345555544443
Q ss_pred CCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeE
Q 036593 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQF 555 (574)
Q Consensus 476 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l 555 (574)
++|++|++++|++++. .++++++|+.|++++|++.+ ++.|..|++++|.+.+. ..+..|+.+
T Consensus 318 --~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l 379 (457)
T 3bz5_A 318 --PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKE 379 (457)
T ss_dssp --TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCB
T ss_pred --ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCcc
Confidence 5777888888877753 26777888888888887774 24566667777776643 345567777
Q ss_pred eccCCccccccCCC
Q 036593 556 NVSQNMLEGEIPVK 569 (574)
Q Consensus 556 ~l~~n~~~~~~p~~ 569 (574)
++++|+++|.||..
T Consensus 380 ~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 380 TLTNNSLTIAVSPD 393 (457)
T ss_dssp CCBTTBEEEECCTT
T ss_pred ccccCcEEEEcChh
Confidence 78888888887764
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-34 Score=289.48 Aligned_cols=347 Identities=27% Similarity=0.393 Sum_probs=263.6
Q ss_pred cCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCE
Q 036593 111 GVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLES 190 (574)
Q Consensus 111 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 190 (574)
..+++++.|+++++.+. ..+ .+..+++|++|++++|.+.+. +. +.++++|++|++++|.+....+ +..+++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34678999999999887 444 478899999999999998744 44 8899999999999998875543 889999999
Q ss_pred EEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCc
Q 036593 191 LALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270 (574)
Q Consensus 191 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 270 (574)
|++++|.+.... .+..+++|++|++++|.+. .++. + ..+++|+.|++++ .+.. ...+..+++|++|++++|.
T Consensus 117 L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~-~~~~-~-~~l~~L~~L~l~~-~~~~--~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITDID--PLKNLTNLNRLELSSNTIS-DISA-L-SGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCCCG--GGTTCTTCSEEEEEEEEEC-CCGG-G-TTCTTCSEEEEEE-SCCC--CGGGTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCCh--HHcCCCCCCEEECCCCccC-CChh-h-ccCCcccEeecCC-cccC--chhhccCCCCCEEECcCCc
Confidence 999999887553 2788899999999999877 3432 3 3788888888853 3322 2236677778888887777
Q ss_pred eeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccc
Q 036593 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYEC 350 (574)
Q Consensus 271 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 350 (574)
+... ..+..+++|+.|++++|.+..... ++.+++|++|++++|.+++.
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----------~~~l~~L~~L~l~~n~l~~~-------------------- 236 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP----------LGILTNLDELSLNGNQLKDI-------------------- 236 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG----------GGGCTTCCEEECCSSCCCCC--------------------
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc----------ccccCCCCEEECCCCCcccc--------------------
Confidence 6533 236677777777777776654321 44566777777776655532
Q ss_pred cccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCC
Q 036593 351 KLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLT 430 (574)
Q Consensus 351 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~ 430 (574)
..+..+++|+.|++++|.+.+..+ +..+++|++|++++|++++ .+. +..++
T Consensus 237 -------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-------------------~~~-~~~l~ 287 (466)
T 1o6v_A 237 -------GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-------------------ISP-LAGLT 287 (466)
T ss_dssp -------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-------------------CGG-GTTCT
T ss_pred -------hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-------------------ccc-ccCCC
Confidence 235677888899999888876543 7778888888888887763 222 66788
Q ss_pred CCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCC
Q 036593 431 SLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLA 510 (574)
Q Consensus 431 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 510 (574)
+|++|++++|++.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 288 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAG 361 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence 99999999998875433 7788999999999998876654 67889999999999988854 467888999999999
Q ss_pred CCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 511 SNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 511 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
+|++.+..| +..+++|+.|++++|+++.
T Consensus 362 ~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 362 HNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCccCccch--hhcCCCCCEEeccCCcccC
Confidence 999886655 7888999999999998885
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=286.51 Aligned_cols=347 Identities=27% Similarity=0.399 Sum_probs=222.7
Q ss_pred cCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCce
Q 036593 63 GNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEM 142 (574)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 142 (574)
..++++++|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 345688888888887753 44 37788888888888888875544 8888888888888888774333 778888888
Q ss_pred eecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcc
Q 036593 143 LQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222 (574)
Q Consensus 143 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 222 (574)
|++++|.+.+. +. +.++++|++|++++|.+... ..+..+++|++|++++ .+... ..+..+++|++|++++|.+
T Consensus 117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcC
Confidence 88888877643 33 77788888888888777643 3477777777777753 33222 2256666677777766665
Q ss_pred cccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCC
Q 036593 223 SGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSA 302 (574)
Q Consensus 223 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 302 (574)
. .++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+...
T Consensus 190 ~-~~~--------------------------~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---- 236 (466)
T 1o6v_A 190 S-DIS--------------------------VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI---- 236 (466)
T ss_dssp C-CCG--------------------------GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC----
T ss_pred C-CCh--------------------------hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc----
Confidence 4 221 23444555555555555543322 45556666666666655442
Q ss_pred ccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCc
Q 036593 303 DQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPT 382 (574)
Q Consensus 303 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 382 (574)
..+..+++|++|++++|.+.+.. .+..+++|++|++++|.+.+..+
T Consensus 237 ------~~l~~l~~L~~L~l~~n~l~~~~---------------------------~~~~l~~L~~L~l~~n~l~~~~~- 282 (466)
T 1o6v_A 237 ------GTLASLTNLTDLDLANNQISNLA---------------------------PLSGLTKLTELKLGANQISNISP- 282 (466)
T ss_dssp ------GGGGGCTTCSEEECCSSCCCCCG---------------------------GGTTCTTCSEEECCSSCCCCCGG-
T ss_pred ------hhhhcCCCCCEEECCCCccccch---------------------------hhhcCCCCCEEECCCCccCcccc-
Confidence 12455666666666666554321 13455666666666666654332
Q ss_pred CccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCC
Q 036593 383 SVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLS 462 (574)
Q Consensus 383 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 462 (574)
+..+++|++|++++|++++. +. +..+++|++|++++|++.+..+ +..+++|++|+++
T Consensus 283 -~~~l~~L~~L~L~~n~l~~~-------------------~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 283 -LAGLTALTNLELNENQLEDI-------------------SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp -GTTCTTCSEEECCSSCCSCC-------------------GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred -ccCCCccCeEEcCCCcccCc-------------------hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 55666677777766666521 11 4566677777777777664433 5566777777777
Q ss_pred CCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccc
Q 036593 463 SNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 463 ~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
+|.+.+. ..+..+++|+.|++++|++.+..+ +..+++|+.|++++|.+++
T Consensus 340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 7776554 346677777777777777765544 6677777777777777764
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=285.80 Aligned_cols=357 Identities=17% Similarity=0.170 Sum_probs=209.2
Q ss_pred CccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCC
Q 036593 61 HLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKL 140 (574)
Q Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 140 (574)
.+.++++|++|++++|.+.+. | .+..+++|++|++++|.+.+. + ++.+++|++|++++|.+.+. + +..+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 345556666666666665532 3 466666666666666666543 2 55666666666666666532 2 5566666
Q ss_pred ceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccC
Q 036593 141 EMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSN 220 (574)
Q Consensus 141 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 220 (574)
++|++++|.+.+ ++ ++++++|++|++++|.+... .+..+++|++|++++|...+.. .+..+++|+.|++++|
T Consensus 109 ~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 666666666653 22 56666666666666666543 2566666666666666433222 3556667777777777
Q ss_pred cccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCC
Q 036593 221 QFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESS 300 (574)
Q Consensus 221 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 300 (574)
.+.+ ++ + ..+++|+.|++++|.+... .+..+++|++|++++|.+++ .| +..+++|+.|++++|.+...+
T Consensus 181 ~l~~-l~--l-~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 181 KITE-LD--V-SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp CCCC-CC--C-TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred ccce-ec--c-ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence 6663 33 2 2566777777777766543 36667778888888887775 33 677788888888888776542
Q ss_pred CCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccC
Q 036593 301 SADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTI 380 (574)
Q Consensus 301 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 380 (574)
...+++|+.|+++++ +++.+++++|.....+| +..+++|+.|++++|...+..
T Consensus 250 ----------~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 250 ----------VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp ----------CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred ----------HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence 445677777777665 34445555555443333 345555666666655543332
Q ss_pred CcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEe
Q 036593 381 PTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEIN 460 (574)
Q Consensus 381 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 460 (574)
+. ..++|+.|+ +..+++|++|++++|++++. .+..+++|++|+
T Consensus 303 ~~---~~~~L~~L~-------------------------------l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~ 345 (457)
T 3bz5_A 303 DC---QAAGITELD-------------------------------LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLS 345 (457)
T ss_dssp EC---TTCCCSCCC-------------------------------CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEE
T ss_pred cc---CCCcceEec-------------------------------hhhcccCCEEECCCCccccc---ccccCCcCcEEE
Confidence 21 122333332 33445666666666666542 255666666666
Q ss_pred CCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCcc
Q 036593 461 LSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPES 521 (574)
Q Consensus 461 L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 521 (574)
+++|.+.+ ++.|..|++++|.+.+. ..+..|+.+++++|++++.+|..
T Consensus 346 l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 346 CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 66666643 23455555666655532 23455666667777766666544
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=287.13 Aligned_cols=320 Identities=23% Similarity=0.250 Sum_probs=201.1
Q ss_pred CEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCC
Q 036593 189 ESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGS 268 (574)
Q Consensus 189 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 268 (574)
+.++.+++.+. .+|..+ .++++.|++++|.+.+..+..+. .+++|++|++++|.+....+..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45666665554 233333 24677777777777643343333 677777777777777766666777777777777777
Q ss_pred CceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEec
Q 036593 269 NSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAY 348 (574)
Q Consensus 269 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 348 (574)
|.+....+..|.++++|++|++++|.+...... .+..+++|++|++++|.+....+..+..+. +|+.|+++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~ 160 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDY--------MFQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLE 160 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT--------TTTTCTTCCEEEECCTTCCEECTTSSTTCT-TCCEEEEE
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChh--------HccccccCCEEECCCCccceeChhhccCCC-CCCEEECC
Confidence 777655555666777777777777766654322 256667777777777766655554444433 56666666
Q ss_pred cccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcC
Q 036593 349 ECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLAS 428 (574)
Q Consensus 349 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~ 428 (574)
+|.+....+..+..+++|+.|++++|.+.+.....+..+++|++|++++|+..+. ++.....
T Consensus 161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~------------------~~~~~~~ 222 (477)
T 2id5_A 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT------------------MTPNCLY 222 (477)
T ss_dssp SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE------------------ECTTTTT
T ss_pred CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc------------------cCccccc
Confidence 6655544444455566666666666665555555555566666666655554432 2222223
Q ss_pred CCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEee
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLS 508 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 508 (574)
..+|++|++++|.+++.....+..+++|++|++++|.+.+..+..+..+++|++|++++|++....+..|.++++|++|+
T Consensus 223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence 34677777777777644445566677777777777777666666666777777777777777666666677777777777
Q ss_pred CCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 509 LASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 509 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+++|.++...+..|..+++|+.|++++|++.
T Consensus 303 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 7777777555556667777777777777765
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=271.95 Aligned_cols=274 Identities=29% Similarity=0.467 Sum_probs=249.0
Q ss_pred hcccccCCCCccc--eeeeeecCCC--CcEEEEEcCCCCCcc--ccCCCccCCCCCcEEEccC-CcccccCchhhcCCCC
Q 036593 19 LLYLLKTTNMRLS--WVGISCDSRH--QRVKALNLSGMGLGG--TIPPHLGNLSFLMSLDVTL-NNFYGHLPNELGKLGR 91 (574)
Q Consensus 19 ~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~l~l~~~~~~~--~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~ 91 (574)
.++.|..+.++|. |.|+.|+... .++++|+++++.+.+ .+|..+.++++|++|++++ |.+.+.+|..|.++++
T Consensus 23 ~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~ 102 (313)
T 1ogq_A 23 TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102 (313)
T ss_dssp GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTT
T ss_pred cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCC
Confidence 4678988888998 9999998644 799999999999998 8999999999999999995 8888899999999999
Q ss_pred CCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCC-CCCEEEcc
Q 036593 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLS-NLFDLDLR 170 (574)
Q Consensus 92 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~ 170 (574)
|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.+++ +|++|+++
T Consensus 103 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp CSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred CCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc
Confidence 99999999999989999999999999999999999988899999999999999999999888999999998 99999999
Q ss_pred CCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceec
Q 036593 171 HNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGT 250 (574)
Q Consensus 171 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 250 (574)
+|.+....+..+..++ |++|++++|.+....+..+..+++|+.|++++|.+.+..+. + ..+++|++|++++|.+...
T Consensus 183 ~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~l~~L~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-GLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp SSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C-CCCTTCCEEECCSSCCEEC
T ss_pred CCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c-cccCCCCEEECcCCcccCc
Confidence 9999888888898887 99999999999988899999999999999999998855554 3 3688999999999999888
Q ss_pred CCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCccc
Q 036593 251 IPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLT 296 (574)
Q Consensus 251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 296 (574)
.+..+..+++|++|++++|.+++..|.. ..+++|+.+++++|+..
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 8888999999999999999998777765 78899999999988743
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-33 Score=282.95 Aligned_cols=320 Identities=21% Similarity=0.235 Sum_probs=164.0
Q ss_pred CEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCC
Q 036593 117 QIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTN 196 (574)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 196 (574)
+.++.++..+. .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45666666555 4444332 46666677666666555556666666666666666666555666666666666666666
Q ss_pred cccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCC
Q 036593 197 NLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIP 276 (574)
Q Consensus 197 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 276 (574)
.+....+..|..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..|..+++|++|++++|.++...+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHcc-ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 66554444555566666666666655533333222 44555555555554444444444444444444444444443333
Q ss_pred CCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccC
Q 036593 277 NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSI 356 (574)
Q Consensus 277 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 356 (574)
..+.++++|+.|++++|.+...... .+..+++|++|+++++... ..+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~--------~~~~l~~L~~L~l~~~~~~-------------------------~~~ 216 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDY--------SFKRLYRLKVLEISHWPYL-------------------------DTM 216 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTT--------CSCSCTTCCEEEEECCTTC-------------------------CEE
T ss_pred hHhcccCCCcEEeCCCCcCcEeChh--------hcccCcccceeeCCCCccc-------------------------ccc
Confidence 3344444444444444444332211 1333344444444333221 112
Q ss_pred CccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEE
Q 036593 357 PKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELR 436 (574)
Q Consensus 357 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~ 436 (574)
+.......+|++|++++|.++......+..+++|++|++++|++++ ..+..+..+++|++|+
T Consensus 217 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------~~~~~~~~l~~L~~L~ 278 (477)
T 2id5_A 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST------------------IEGSMLHELLRLQEIQ 278 (477)
T ss_dssp CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE------------------ECTTSCTTCTTCCEEE
T ss_pred CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc------------------cChhhccccccCCEEE
Confidence 2222222355555555555554333344455555555555554442 2223445555555555
Q ss_pred CCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCccc
Q 036593 437 LGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS 491 (574)
Q Consensus 437 l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~ 491 (574)
+++|++.+..+.++..+++|++|++++|.+....+..|..+++|++|++++|++.
T Consensus 279 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 5555555555555555555555555555555544445555555555555555554
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=267.33 Aligned_cols=350 Identities=17% Similarity=0.126 Sum_probs=216.1
Q ss_pred cccccCCCCccc-eeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcc
Q 036593 20 LYLLKTTNMRLS-WVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFS 98 (574)
Q Consensus 20 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 98 (574)
++.|..+.+|+. |.+..|.... .++........ ....-..++++++|+++++.+...-+..|..+++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~---~~i~~~~~~~~--~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYD---VHIDMQTQDVY--FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEES---CEECSSCCCCE--ESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceee---eeeeccccccc--ccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 567887777665 3333332111 11222222221 11112346899999999999876555668999999999999
Q ss_pred CCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCC
Q 036593 99 FNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQI 178 (574)
Q Consensus 99 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 178 (574)
+|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+.++++|++|++++|.+....
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99998888889999999999999999998777777889999999999999888444444688899999999999888777
Q ss_pred CccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCC
Q 036593 179 PTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNA 258 (574)
Q Consensus 179 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 258 (574)
+..+..+++|++|++++|.+... .+..+++|+.|++++|.+.+ ++ ..+.|+.|++++|.+.....
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-~~-----~~~~L~~L~l~~n~l~~~~~------ 222 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHNSINVVRG------ 222 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-EE-----CCSSCSEEECCSSCCCEEEC------
T ss_pred hhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-cC-----CCCcceEEECCCCeeeeccc------
Confidence 77788888899999988887654 24566777888877776542 11 23345555555554443211
Q ss_pred CCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhh
Q 036593 259 SKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF 338 (574)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 338 (574)
...++|+.|++++|.+... ..+..+++|++|++++|.+.+.
T Consensus 223 ---------------------~~~~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~Ls~n~l~~~-------- 263 (390)
T 3o6n_A 223 ---------------------PVNVELTILKLQHNNLTDT----------AWLLNYPGLVEVDLSYNELEKI-------- 263 (390)
T ss_dssp ---------------------CCCSSCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSCCCEE--------
T ss_pred ---------------------cccccccEEECCCCCCccc----------HHHcCCCCccEEECCCCcCCCc--------
Confidence 1124455555555544432 1244455555555555544422
Q ss_pred ccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCee
Q 036593 339 SASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKL 418 (574)
Q Consensus 339 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l 418 (574)
.+..+..+++|++|++++|.+++. +..+..+++|++|++++|+++
T Consensus 264 -----------------~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~----------------- 308 (390)
T 3o6n_A 264 -----------------MYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL----------------- 308 (390)
T ss_dssp -----------------ESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-----------------
T ss_pred -----------------ChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-----------------
Confidence 222344455555555555555432 223345556666666666555
Q ss_pred eecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCccee
Q 036593 419 SGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLND 468 (574)
Q Consensus 419 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~ 468 (574)
.++..+..+++|++|++++|+++... +..+++|++|++++|++..
T Consensus 309 --~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 309 --HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp --CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred --ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 23333445566666666666665331 4455666666666666543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-32 Score=267.76 Aligned_cols=307 Identities=22% Similarity=0.270 Sum_probs=161.8
Q ss_pred CCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEc
Q 036593 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSI 290 (574)
Q Consensus 211 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 290 (574)
+++.++++++.+. .+|..++..+++|+.|+++++.+....+..|..+++|++|++++|.+....+..+.++++|++|++
T Consensus 46 ~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 3444444444333 333333223444444444444443333334444444444444444444444444444445555555
Q ss_pred cCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEE
Q 036593 291 RTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLT 370 (574)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 370 (574)
++|.+...+... +..+++|++|++++|.+.... +..+..+++|++|+
T Consensus 125 ~~n~l~~l~~~~--------~~~l~~L~~L~L~~n~l~~~~-------------------------~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 125 ERNDLSSLPRGI--------FHNTPKLTTLSMSNNNLERIE-------------------------DDTFQATTSLQNLQ 171 (390)
T ss_dssp CSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCBCC-------------------------TTTTSSCTTCCEEE
T ss_pred CCCccCcCCHHH--------hcCCCCCcEEECCCCccCccC-------------------------hhhccCCCCCCEEE
Confidence 444444332111 334444444444444433221 12233344444444
Q ss_pred CcCCCCcccCCcCccccCCCCeEeccCCcccc-cCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCcc
Q 036593 371 LDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG-SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSS 449 (574)
Q Consensus 371 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 449 (574)
+++|.+++. .+..+++|++|++++|.+++ ..|..++++++++|.++.. +. ..+++|+.|++++|.+++. ..
T Consensus 172 l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~ 243 (390)
T 3o6n_A 172 LSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AW 243 (390)
T ss_dssp CCSSCCSBC---CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GG
T ss_pred CCCCcCCcc---ccccccccceeecccccccccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HH
Confidence 444444322 13334444444444444433 2334444555555544432 21 1235777777777777532 45
Q ss_pred ccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCC
Q 036593 450 LWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLE 529 (574)
Q Consensus 450 ~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 529 (574)
+..+++|++|++++|.+.+..+..+..+++|++|++++|++.. .+..+..+++|++|++++|++. .+|..+..+++|+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence 6667777777777777776666677777777777777777764 3344556777777777777776 4555566677777
Q ss_pred eeeCCCCcccccCCcCcccCCCCCeEeccCCcccc
Q 036593 530 SLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 530 ~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~ 564 (574)
.|++++|++... + +..+++|+.|++++|++..
T Consensus 322 ~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 322 NLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 777777777643 2 5566777777777777654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=260.29 Aligned_cols=307 Identities=27% Similarity=0.444 Sum_probs=192.9
Q ss_pred ccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCc
Q 036593 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNI 237 (574)
Q Consensus 158 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 237 (574)
+..+++|++|+++++.+... ..+..+++|++|++++|.+....+ +..+++|++|++++|.+. .++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~---------- 104 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS---------- 104 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG----------
T ss_pred chhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch----------
Confidence 34556677777776666533 235666666666666666553322 555566666666665544 221
Q ss_pred CeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCC
Q 036593 238 EYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKL 317 (574)
Q Consensus 238 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L 317 (574)
.+..+++|++|++++|.+....+ +..+++|+.|++++|..... ...+..+++|
T Consensus 105 ----------------~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~---------~~~~~~l~~L 157 (347)
T 4fmz_A 105 ----------------ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD---------LSPLSNMTGL 157 (347)
T ss_dssp ----------------GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC---------CGGGTTCTTC
T ss_pred ----------------HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc---------ccchhhCCCC
Confidence 24444555555555555543222 55556666666665533221 1124555666
Q ss_pred cEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccC
Q 036593 318 SYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLED 397 (574)
Q Consensus 318 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 397 (574)
++|+++++.+.... .+..+++|++|++++|.+.+... +..+++|+++++++
T Consensus 158 ~~L~l~~~~~~~~~---------------------------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 158 NYLTVTESKVKDVT---------------------------PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208 (347)
T ss_dssp CEEECCSSCCCCCG---------------------------GGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred cEEEecCCCcCCch---------------------------hhccCCCCCEEEccCCccccccc--ccCCCccceeeccc
Confidence 66666665544221 14456667777777766654322 56667777777777
Q ss_pred CcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCC
Q 036593 398 NNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKL 477 (574)
Q Consensus 398 ~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l 477 (574)
|++++ .+. +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+
T Consensus 209 n~l~~-------------------~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 209 NQITD-------------------ITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp SCCCC-------------------CGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred CCCCC-------------------Cch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 66652 111 5567777788888777764333 66777888888888877653 456778
Q ss_pred CCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEec
Q 036593 478 KVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNV 557 (574)
Q Consensus 478 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l 557 (574)
++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++...| +..+++|++|++
T Consensus 265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 8888888888888753 457778888888888888887777778888888888888888886544 778888888888
Q ss_pred cCCccc
Q 036593 558 SQNMLE 563 (574)
Q Consensus 558 ~~n~~~ 563 (574)
++|+|+
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 888875
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-31 Score=277.20 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=118.0
Q ss_pred CCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCcee
Q 036593 64 NLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEML 143 (574)
Q Consensus 64 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 143 (574)
.+++++.++++++.+....+..|..+++|++|++++|.+.+..+..|+.+++|++|++++|.+.+..+..|.++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788999999988876666678889999999999999888888888899999999999998887667777888888888
Q ss_pred ecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcc
Q 036593 144 QASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222 (574)
Q Consensus 144 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 222 (574)
++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 8888888744444467788888888888877766666777777777777777766543 133445555555555443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.2e-31 Score=257.04 Aligned_cols=307 Identities=27% Similarity=0.417 Sum_probs=212.2
Q ss_pred CCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCc
Q 036593 134 LFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIR 213 (574)
Q Consensus 134 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 213 (574)
+..+++|++|+++++.+. .++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 457899999999999987 444 48899999999999999886433 99999999999999998754 4688999999
Q ss_pred EEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCC
Q 036593 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTN 293 (574)
Q Consensus 214 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 293 (574)
+|++++|.+. .++. ...+++|+.|++++|..... .. .+..+++|++|++++|
T Consensus 114 ~L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~-~~------------------------~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 114 ELYLNEDNIS-DISP--LANLTKMYSLNLGANHNLSD-LS------------------------PLSNMTGLNYLTVTES 165 (347)
T ss_dssp EEECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCC-CG------------------------GGTTCTTCCEEECCSS
T ss_pred EEECcCCccc-Cchh--hccCCceeEEECCCCCCccc-cc------------------------chhhCCCCcEEEecCC
Confidence 9999999877 3333 22566666666665543321 11 2444555555555555
Q ss_pred cccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcC
Q 036593 294 NLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDF 373 (574)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 373 (574)
.+..... +..+++|++|++++|.+.+.. . +..+++|+.+++++
T Consensus 166 ~~~~~~~----------~~~l~~L~~L~l~~n~l~~~~--------------------------~-~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 166 KVKDVTP----------IANLTDLYSLSLNYNQIEDIS--------------------------P-LASLTSLHYFTAYV 208 (347)
T ss_dssp CCCCCGG----------GGGCTTCSEEECTTSCCCCCG--------------------------G-GGGCTTCCEEECCS
T ss_pred CcCCchh----------hccCCCCCEEEccCCcccccc--------------------------c-ccCCCccceeeccc
Confidence 4433211 344555555555555444221 1 34556666666666
Q ss_pred CCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCC
Q 036593 374 NDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSL 453 (574)
Q Consensus 374 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 453 (574)
|.+.+..+ +..+++|++|++++|++++ .+. +..+++|++|++++|.+++. ..+..+
T Consensus 209 n~l~~~~~--~~~~~~L~~L~l~~n~l~~-------------------~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 209 NQITDITP--VANMTRLNSLKIGNNKITD-------------------LSP-LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCC-------------------CGG-GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred CCCCCCch--hhcCCcCCEEEccCCccCC-------------------Ccc-hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 66654332 5666777777777776652 222 56677788888888877642 456777
Q ss_pred CCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeC
Q 036593 454 EYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDL 533 (574)
Q Consensus 454 ~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 533 (574)
++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+..++++++|++|++++|++++..+ +..+++|+.|++
T Consensus 265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 8888888888877654 346778888888888888887777778888888888888888885544 778888888888
Q ss_pred CCCccc
Q 036593 534 SGNNFS 539 (574)
Q Consensus 534 ~~n~~~ 539 (574)
++|+++
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 888875
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=274.17 Aligned_cols=309 Identities=22% Similarity=0.253 Sum_probs=161.1
Q ss_pred CCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEe
Q 036593 186 QNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLD 265 (574)
Q Consensus 186 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 265 (574)
.+++.++++++.+....+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+....+..|..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 4455555555555444444444555555555555554422222222 444444444444444444344444444444444
Q ss_pred CCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceE
Q 036593 266 LGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSF 345 (574)
Q Consensus 266 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 345 (574)
+++|.+....+..|.++++|+.|++++|.+...... .+..+++|++|++++|.++..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~--------------- 186 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--------TFQATTSLQNLQLSSNRLTHV--------------- 186 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT--------TTTTCTTCCEEECTTSCCSBC---------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh--------hhhcCCcCcEEECcCCCCCCc---------------
Confidence 444444433333334444444444444444332211 133344444444444433311
Q ss_pred EeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCcc
Q 036593 346 YAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPC 425 (574)
Q Consensus 346 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~ 425 (574)
.+..+++|+.+++++|.+.+ +...++|++|++++|.+ +...+.
T Consensus 187 -------------~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l------------------~~~~~~- 229 (597)
T 3oja_B 187 -------------DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSI------------------NVVRGP- 229 (597)
T ss_dssp -------------CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCC------------------CEEECS-
T ss_pred -------------ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcc------------------cccccc-
Confidence 12334455555555554442 12234455555555544 322211
Q ss_pred CcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCC
Q 036593 426 LASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLE 505 (574)
Q Consensus 426 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 505 (574)
..++|+.|++++|.+++ +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ++..+..+++|+
T Consensus 230 --~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~ 304 (597)
T 3oja_B 230 --VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLK 304 (597)
T ss_dssp --CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCC
T ss_pred --cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCc
Confidence 12467777777776653 3556666777777777777766666666677777777777777664 344445567777
Q ss_pred EeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcccc
Q 036593 506 TLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 506 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~ 564 (574)
.|+|++|.+. .+|..+..+++|+.|++++|.+... .+..+++|+.|++++|++.+
T Consensus 305 ~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 305 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp EEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCCCC
Confidence 7777777766 4555566667777777777776633 24556677777777777654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=243.60 Aligned_cols=288 Identities=22% Similarity=0.273 Sum_probs=215.8
Q ss_pred CCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEc
Q 036593 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSI 290 (574)
Q Consensus 211 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 290 (574)
+++.++++++.+. .+|..+ .++++.|++++|.+....+..+..+++|++|++++|.++...+..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5778888877766 666544 256777777777776666666777777777777777776666666777777777777
Q ss_pred cCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEE
Q 036593 291 RTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLT 370 (574)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 370 (574)
++|.+...+... .++|++|++++|.+. ...+..+..+++|++|+
T Consensus 110 ~~n~l~~l~~~~-----------~~~L~~L~l~~n~i~-------------------------~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 110 SKNHLVEIPPNL-----------PSSLVELRIHDNRIR-------------------------KVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp CSSCCCSCCSSC-----------CTTCCEEECCSSCCC-------------------------CCCSGGGSSCSSCCEEE
T ss_pred CCCcCCccCccc-----------cccCCEEECCCCccC-------------------------ccCHhHhCCCccCCEEE
Confidence 777666433211 145566666555544 33344567888999999
Q ss_pred CcCCCCcc--cCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCc
Q 036593 371 LDFNDLNG--TIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPS 448 (574)
Q Consensus 371 l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 448 (574)
+++|.++. ..+..+..+ +|++|++++|++++ +|..+. ++|++|++++|.+.+..+.
T Consensus 154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-------------------l~~~~~--~~L~~L~l~~n~i~~~~~~ 211 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-------------------IPKDLP--ETLNELHLDHNKIQAIELE 211 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-------------------CCSSSC--SSCSCCBCCSSCCCCCCTT
T ss_pred CCCCccccCCCCcccccCC-ccCEEECcCCCCCc-------------------cCcccc--CCCCEEECCCCcCCccCHH
Confidence 99988863 556667666 88888888888773 333332 6899999999999877778
Q ss_pred cccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccC----
Q 036593 449 SLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGS---- 524 (574)
Q Consensus 449 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~---- 524 (574)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++..+..+++|++|++++|++++..+..|..
T Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290 (332)
T ss_dssp SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccc
Confidence 8999999999999999998877778889999999999999998 56677889999999999999999776666654
Q ss_pred --CcCCCeeeCCCCccc--ccCCcCcccCCCCCeEeccCCc
Q 036593 525 --LISLESLDLSGNNFS--GKIPKSLEALSHLKQFNVSQNM 561 (574)
Q Consensus 525 --~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~l~l~~n~ 561 (574)
.++|+.|++++|++. ...+..|..+++|+.+++++|+
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 367999999999987 5677789999999999999885
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-34 Score=293.18 Aligned_cols=388 Identities=19% Similarity=0.156 Sum_probs=205.7
Q ss_pred CCCceeecccccCcccCchh-ccCCCCCCEEEccCCcCCcC----CCccccCCCCCCEEEccCCcccccCchhhc-ccC-
Q 036593 138 SKLEMLQASFNVIDGNIPSG-IGNLSNLFDLDLRHNNLQDQ----IPTEIGNLQNLESLALGTNNLSGLIPPAIF-NIS- 210 (574)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~~~- 210 (574)
++|++|+++.+.+....... +..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46777888777765332222 56677788888877776632 244556667777777777776554333332 233
Q ss_pred ---CCcEEEcccCccccc----CCchhhcCCCCcCeeecccccceecCCcCc-----cCCCCccEEeCCCCceeecC---
Q 036593 211 ---TIRVLNLHSNQFSGR----LPSTIGHSLPNIEYLTLAINNLIGTIPDSL-----TNASKLIGLDLGSNSFSGHI--- 275 (574)
Q Consensus 211 ---~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~--- 275 (574)
+|++|++++|.+.+. ++..+. .+++|++|++++|.+.......+ ...++|++|++++|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTT-SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHc-cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 567777776665521 122222 45555555555555432211111 11234555555555444321
Q ss_pred -CCCccCCCcCceEEccCCcccccCCCCcccccccccc-CCCCCcEEEccCCCCCCCCChhhhhhccccceEEecccccc
Q 036593 276 -PNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLT-NCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLG 353 (574)
Q Consensus 276 -~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 353 (574)
+..+..+++|++|++++|.+...+... +...+. ..++|++|++++|.++.....
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~----l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------- 217 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRV----LCQGLKDSPCQLEALKLESCGVTSDNCR-------------------- 217 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHH----HHHHHHHSCCCCCEEECTTSCCBTTHHH--------------------
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHH----HHHHHhcCCCCceEEEccCCCCcHHHHH--------------------
Confidence 222333444444554444433221100 000010 123444444444443322110
Q ss_pred ccCCccccCCCCCcEEECcCCCCcccCC-----cCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcC
Q 036593 354 GSIPKEIGNLRGLILLTLDFNDLNGTIP-----TSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLAS 428 (574)
Q Consensus 354 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~ 428 (574)
.++..+..+++|++|++++|.+++... ..+..+++|++|++++|++++.... .++..+..
T Consensus 218 -~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------~l~~~l~~ 282 (461)
T 1z7x_W 218 -DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--------------DLCRVLRA 282 (461)
T ss_dssp -HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--------------HHHHHHHH
T ss_pred -HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--------------HHHHHHhh
Confidence 123334455666666666666554321 1112356666666666665531000 13344556
Q ss_pred CCCCCeEECCCCeecccCCcccc-----CCCCCCeEeCCCCcceec----CCccccCCCCCCEEeCCCCcccccCccccc
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLW-----SLEYILEINLSSNSLNDS----LPSNVQKLKVLRVLDLSRNQLSGNIPSTIG 499 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 499 (574)
+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 77777777777776543322222 235777778877777654 344455667788888888777654433333
Q ss_pred C-----CCCCCEeeCCCCcccc----cCCccccCCcCCCeeeCCCCcccccCCcCcc-----cCCCCCeEeccCCccccc
Q 036593 500 A-----LVDLETLSLASNQFQG----PIPESVGSLISLESLDLSGNNFSGKIPKSLE-----ALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 500 ~-----~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~l~l~~n~~~~~ 565 (574)
. .++|++|++++|.+++ .++..+..+++|+.|++++|+++......+. ...+|+.|++.++.+...
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 2 5678888888887775 5566667777888888888877653222221 133577777776665543
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-29 Score=240.74 Aligned_cols=290 Identities=21% Similarity=0.270 Sum_probs=221.5
Q ss_pred CCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEE
Q 036593 210 STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLS 289 (574)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 289 (574)
.+++.++++++.+. .+|..+ .+.++.|++++|.+....+..+..+++|++|++++|.+....+..+.++++|++|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 36788888887776 566543 25777888888877766666777777888888888777766677777777778887
Q ss_pred ccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEE
Q 036593 290 IRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILL 369 (574)
Q Consensus 290 l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L 369 (574)
+++|.+...+... .++|++|++++|.++. ..+..+..+++|++|
T Consensus 107 Ls~n~l~~l~~~~-----------~~~L~~L~l~~n~l~~-------------------------~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 107 LSKNQLKELPEKM-----------PKTLQELRVHENEITK-------------------------VRKSVFNGLNQMIVV 150 (330)
T ss_dssp CCSSCCSBCCSSC-----------CTTCCEEECCSSCCCB-------------------------BCHHHHTTCTTCCEE
T ss_pred CCCCcCCccChhh-----------cccccEEECCCCcccc-------------------------cCHhHhcCCccccEE
Confidence 7777766543211 1466666666665543 334456778899999
Q ss_pred ECcCCCCcc--cCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCC
Q 036593 370 TLDFNDLNG--TIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIP 447 (574)
Q Consensus 370 ~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 447 (574)
++++|.+.. ..+..+..+++|++|++++|+++. +|..+. ++|++|++++|++.+..+
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------l~~~~~--~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-------------------IPQGLP--PSLTELHLDGNKITKVDA 209 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-------------------CCSSCC--TTCSEEECTTSCCCEECT
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-------------------CCcccc--ccCCEEECCCCcCCccCH
Confidence 999998864 566778889999999999998872 333332 789999999999987778
Q ss_pred ccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccC---
Q 036593 448 SSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGS--- 524 (574)
Q Consensus 448 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~--- 524 (574)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++..+..+++|++|++++|++++..+..|..
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 88999999999999999998887778889999999999999998 56677888999999999999999766666643
Q ss_pred ---CcCCCeeeCCCCcccc--cCCcCcccCCCCCeEeccCCc
Q 036593 525 ---LISLESLDLSGNNFSG--KIPKSLEALSHLKQFNVSQNM 561 (574)
Q Consensus 525 ---~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~l~l~~n~ 561 (574)
.++|+.|++++|++.. ..|..|..+++++.+++++|+
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3789999999999864 556788999999999999985
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-33 Score=289.29 Aligned_cols=392 Identities=20% Similarity=0.179 Sum_probs=216.7
Q ss_pred CCCCEEEccCCcCccCCCcc-ccCCCCCCEEEccCCccccc----CCcCCCCCCCCceeecccccCcccCchhc-cCCC-
Q 036593 90 GRLKFISFSFNKLSGSIPTW-IGVLSKLQIMSLRNNNITGP----IPNSLFNLSKLEMLQASFNVIDGNIPSGI-GNLS- 162 (574)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~- 162 (574)
++|++|+++++++.+..... +..+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677788777766443332 66677777777777776532 23445566777777777766653323222 2233
Q ss_pred ---CCCEEEccCCcCCcC----CCccccCCCCCCEEEccCCcccccCchhhcc-----cCCCcEEEcccCcccccCCchh
Q 036593 163 ---NLFDLDLRHNNLQDQ----IPTEIGNLQNLESLALGTNNLSGLIPPAIFN-----ISTIRVLNLHSNQFSGRLPSTI 230 (574)
Q Consensus 163 ---~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~ 230 (574)
+|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+.+.....+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 566666666666532 2455566666666666666654433322221 2345555555555443221111
Q ss_pred hcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCcc-----CCCcCceEEccCCcccccCCCCccc
Q 036593 231 GHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFG-----NLRHLNVLSIRTNNLTTESSSADQW 305 (574)
Q Consensus 231 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~ 305 (574)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+...+..
T Consensus 163 ---------------------~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~---- 217 (461)
T 1z7x_W 163 ---------------------ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR---- 217 (461)
T ss_dssp ---------------------HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH----
T ss_pred ---------------------HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH----
Confidence 22233445566666666655433222222 244677777777766543211
Q ss_pred cccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCccc----CC
Q 036593 306 SFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGT----IP 381 (574)
Q Consensus 306 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~ 381 (574)
.+...+..+++|++|++++|.+++.....+.. ..+..+++|++|++++|.+++. ++
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~--------------------~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLGDVGMAELCP--------------------GLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH--------------------HHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred HHHHHHHhCCCccEEeccCCcCChHHHHHHHH--------------------HHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 12334556677777777776654321111111 1122456677777777766643 33
Q ss_pred cCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCcc-CcCCCCCCeEECCCCeeccc----CCccccCCCCC
Q 036593 382 TSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPC-LASLTSLRELRLGSNKLTSS----IPSSLWSLEYI 456 (574)
Q Consensus 382 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~-~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L 456 (574)
..+..+++|++|++++|.+++..+. .+... ....++|++|++++|.+++. .+..+..+++|
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~~~~~~--------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELGDEGAR--------------LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCHHHHHH--------------HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred HHHhhCCCcceEECCCCCCchHHHH--------------HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence 4455577777777777776532111 01111 12235777777777776644 23445566777
Q ss_pred CeEeCCCCcceecCCccccC-----CCCCCEEeCCCCcccc----cCcccccCCCCCCEeeCCCCcccccCCcc----cc
Q 036593 457 LEINLSSNSLNDSLPSNVQK-----LKVLRVLDLSRNQLSG----NIPSTIGALVDLETLSLASNQFQGPIPES----VG 523 (574)
Q Consensus 457 ~~L~L~~~~l~~~~~~~~~~-----l~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----l~ 523 (574)
++|++++|.+.+..+..+.. .++|++|++++|.+++ ..+..+..+++|++|++++|++++..... +.
T Consensus 344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 423 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHT
T ss_pred cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhc
Confidence 77777777776543332221 5678888888887774 44556667788888888888777532222 11
Q ss_pred -CCcCCCeeeCCCCcccc
Q 036593 524 -SLISLESLDLSGNNFSG 540 (574)
Q Consensus 524 -~~~~L~~L~l~~n~~~~ 540 (574)
...+|+.|++.++.+..
T Consensus 424 ~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 424 QPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp STTCCCCEEECTTCCCCH
T ss_pred cCCcchhheeecccccCH
Confidence 22357777777666654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=235.40 Aligned_cols=296 Identities=20% Similarity=0.249 Sum_probs=211.8
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEcc
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (574)
+++.++++++++. .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4567888888887 4565443 689999999999887777789999999999999999988888899999999999999
Q ss_pred CCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCc--CCCccccCCCCCCEEEccCCcccc
Q 036593 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQD--QIPTEIGNLQNLESLALGTNNLSG 200 (574)
Q Consensus 123 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~ 200 (574)
+|.+. ..|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99887 4555443 789999999988886666778888999999998887753 456677888888888888888764
Q ss_pred cCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCcc
Q 036593 201 LIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFG 280 (574)
Q Consensus 201 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 280 (574)
. +..+. ++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+. ..|..+.
T Consensus 186 l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 186 I-PQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp C-CSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred C-Ccccc--ccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 3 33332 6788888888877744444444 6777777777777777666666777777777777777776 4566677
Q ss_pred CCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccc
Q 036593 281 NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEI 360 (574)
Q Consensus 281 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 360 (574)
.+++|++|++++|.++..+...... .......+.++.+++++|++... ...|..+
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~--~~~~~~~~~l~~l~l~~N~~~~~-----------------------~i~~~~f 315 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCP--PGYNTKKASYSGVSLFSNPVQYW-----------------------EIQPSTF 315 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSC--SSCCTTSCCCSEEECCSSSSCGG-----------------------GSCGGGG
T ss_pred cCCCcCEEECCCCcCCccChhhcCC--cccccccccccceEeecCccccc-----------------------ccCcccc
Confidence 7777777777777776654333110 00011235566666666655421 1344556
Q ss_pred cCCCCCcEEECcCC
Q 036593 361 GNLRGLILLTLDFN 374 (574)
Q Consensus 361 ~~l~~L~~L~l~~~ 374 (574)
..+++++.+++++|
T Consensus 316 ~~~~~l~~l~L~~N 329 (330)
T 1xku_A 316 RCVYVRAAVQLGNY 329 (330)
T ss_dssp TTCCCGGGEEC---
T ss_pred ccccceeEEEeccc
Confidence 77777888887766
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=238.72 Aligned_cols=293 Identities=20% Similarity=0.217 Sum_probs=163.1
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEcc
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (574)
++++++++++++. .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|++.+..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3456677766665 3454442 567777777777665555667777777777777777766666667777777777777
Q ss_pred CCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCc--CCCccccCCCCCCEEEccCCcccc
Q 036593 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQD--QIPTEIGNLQNLESLALGTNNLSG 200 (574)
Q Consensus 123 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~ 200 (574)
+|.+. .+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+.. ..+..+..+ +|+.|++++|.+..
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 77665 3343333 566666666666554444445556666666666655532 333344444 45555555554432
Q ss_pred cCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCcc
Q 036593 201 LIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFG 280 (574)
Q Consensus 201 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 280 (574)
+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+....+..+.
T Consensus 187 -------------------------l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 187 -------------------------IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp -------------------------CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred -------------------------cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 333221 4555555555555544445555666666666666666555555566
Q ss_pred CCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccc
Q 036593 281 NLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEI 360 (574)
Q Consensus 281 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 360 (574)
.+++|+.|++++|.+... +..+..+++|++|++++|.++...+..+.... ..
T Consensus 239 ~l~~L~~L~L~~N~l~~l---------p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-------------------~~ 290 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSRV---------PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG-------------------FG 290 (332)
T ss_dssp GCTTCCEEECCSSCCCBC---------CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS-------------------CC
T ss_pred CCCCCCEEECCCCcCeec---------ChhhhcCccCCEEECCCCCCCccChhHccccc-------------------cc
Confidence 666666666666665532 22255566666666666666654433322210 00
Q ss_pred cCCCCCcEEECcCCCCc--ccCCcCccccCCCCeEeccCC
Q 036593 361 GNLRGLILLTLDFNDLN--GTIPTSVGTLQQLQGLSLEDN 398 (574)
Q Consensus 361 ~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~ 398 (574)
...+.|+.+++++|.+. +..+.+|..+++|+.+++++|
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 11345566666666554 344455666666666666655
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=235.30 Aligned_cols=254 Identities=28% Similarity=0.487 Sum_probs=210.7
Q ss_pred CcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccC-CCCCCCCChhhhhhccccceEEeccccccccCCcccc
Q 036593 283 RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDS-NPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIG 361 (574)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 361 (574)
.+++.|++++|.+.... ..+..+..+++|++|++++ +.+.+..+..+..+. +|++|++++|.+....|..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~------~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY------PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCE------ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccCCc------ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHh
Confidence 57888888888876410 1334577888888888884 777777777776654 788888888888777777778
Q ss_pred CCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCC-CCCeEECCCC
Q 036593 362 NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLT-SLRELRLGSN 440 (574)
Q Consensus 362 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~-~L~~L~l~~n 440 (574)
.+++|++|++++|.+.+..+..+..+++|++|++++|++++ .+|..+..++ +|++|++++|
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~------------------~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG------------------AIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE------------------ECCGGGGCCCTTCCEEECCSS
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC------------------cCCHHHhhhhhcCcEEECcCC
Confidence 88888888888888777777777788888888877777764 4556677777 9999999999
Q ss_pred eecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCc
Q 036593 441 KLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPE 520 (574)
Q Consensus 441 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 520 (574)
++.+..+..+..+. |++|++++|.+.+..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|++++..|.
T Consensus 185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh
Confidence 99988898888887 99999999999988888899999999999999999865554 78889999999999999988999
Q ss_pred cccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCc-ccc
Q 036593 521 SVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNM-LEG 564 (574)
Q Consensus 521 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~-~~~ 564 (574)
.+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+ +.|
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 9999999999999999999888876 888999999999999 555
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-31 Score=276.95 Aligned_cols=455 Identities=15% Similarity=0.098 Sum_probs=251.4
Q ss_pred CCccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCccc---ccCch------------hhcCCCC
Q 036593 27 NMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFY---GHLPN------------ELGKLGR 91 (574)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~---~~~~~------------~~~~~~~ 91 (574)
..+.+|.++.+..+ +.+.+..+ ....++..+..+++|++|++++|... +.+|. ....+++
T Consensus 39 ~vck~W~~~~~~~~----~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 113 (592)
T 3ogk_B 39 LVCRRWFKIDSETR----EHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113 (592)
T ss_dssp TSCHHHHHHHHHHC----CEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred HHhHHHHHhhhccc----cEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC
Confidence 45567876643221 23333332 12233445567788888888876432 11111 1124556
Q ss_pred CCEEEccCCcCccCCCccccC-CCC-CCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEc
Q 036593 92 LKFISFSFNKLSGSIPTWIGV-LSK-LQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDL 169 (574)
Q Consensus 92 L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 169 (574)
|++|++++|.+.+..+..+.. +++ |++|++++|... ... .++....++++|++|++
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~--------------------~l~~~~~~~~~L~~L~L 171 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTD--------------------GLLSIVTHCRKIKTLLM 171 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHH--------------------HHHHHHHHCTTCSEEEC
T ss_pred CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHH--------------------HHHHHHhhCCCCCEEEC
Confidence 666666665554444444433 222 555555554311 000 11111223444444444
Q ss_pred cCCcCCcCCC----ccccCCCCCCEEEccCCccc----ccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeee
Q 036593 170 RHNNLQDQIP----TEIGNLQNLESLALGTNNLS----GLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLT 241 (574)
Q Consensus 170 ~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 241 (574)
++|.+.+... ..+..+++|++|+++.|.+. ...+..+..+++|+.|++++|.+. .++..+. .+++|+.++
T Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~-~~~~L~~L~ 249 (592)
T 3ogk_B 172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFK-AAANLEEFC 249 (592)
T ss_dssp TTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHH-HCTTCCEEE
T ss_pred ccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHh-hhhHHHhhc
Confidence 4444332211 12233445555555544443 122222334555555555555544 2332222 455555555
Q ss_pred cccccce---ecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCc
Q 036593 242 LAINNLI---GTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLS 318 (574)
Q Consensus 242 l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 318 (574)
++..... ......+..+++|+.+.+.++... ..+..+..+++|++|++++|.+.... +...+..+++|+
T Consensus 250 l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~-------~~~~~~~~~~L~ 321 (592)
T 3ogk_B 250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETED-------HCTLIQKCPNLE 321 (592)
T ss_dssp ECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHH-------HHHHHTTCTTCC
T ss_pred ccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHH-------HHHHHHhCcCCC
Confidence 5432111 012233455666777776664322 34455566777777777777644321 122245667777
Q ss_pred EEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcC-----------CCCcccCCcC-ccc
Q 036593 319 YLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDF-----------NDLNGTIPTS-VGT 386 (574)
Q Consensus 319 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~-----------~~~~~~~~~~-~~~ 386 (574)
+|++++ .+. ...++.....+++|++|++++ +.+++..... ...
T Consensus 322 ~L~L~~-~~~------------------------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 322 VLETRN-VIG------------------------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEEEG-GGH------------------------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEeccC-ccC------------------------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 776652 111 112222345678899999984 4454332222 355
Q ss_pred cCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCc-CCCCCCeEECC----CCeeccc-----CCccccCCCCC
Q 036593 387 LQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLA-SLTSLRELRLG----SNKLTSS-----IPSSLWSLEYI 456 (574)
Q Consensus 387 ~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~-~~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L 456 (574)
+++|++|+++.+++++. ....+. .+++|++|+++ .+.+++. .+..+..+++|
T Consensus 377 ~~~L~~L~l~~~~l~~~------------------~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNE------------------SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp CTTCSEEEEEESCCCHH------------------HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred CccCeEEEeecCCccHH------------------HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 88999998877777643 222333 48899999996 5566532 22236678999
Q ss_pred CeEeCCCCc--ceecCCccc-cCCCCCCEEeCCCCccccc-CcccccCCCCCCEeeCCCCccccc-CCccccCCcCCCee
Q 036593 457 LEINLSSNS--LNDSLPSNV-QKLKVLRVLDLSRNQLSGN-IPSTIGALVDLETLSLASNQFQGP-IPESVGSLISLESL 531 (574)
Q Consensus 457 ~~L~L~~~~--l~~~~~~~~-~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L 531 (574)
++|++++|. +.+.....+ ..+++|++|++++|++++. .+..+.++++|++|+|++|.+++. .+.....+++|+.|
T Consensus 439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence 999997654 444433333 4589999999999998753 334557899999999999998754 33445678999999
Q ss_pred eCCCCcccccCCcCcc-cCCCCCeEeccCCc
Q 036593 532 DLSGNNFSGKIPKSLE-ALSHLKQFNVSQNM 561 (574)
Q Consensus 532 ~l~~n~~~~~~~~~l~-~l~~L~~l~l~~n~ 561 (574)
++++|+++......+. .+|.+....+..++
T Consensus 519 ~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~ 549 (592)
T 3ogk_B 519 WVQGYRASMTGQDLMQMARPYWNIELIPSRR 549 (592)
T ss_dssp EEESCBCCTTCTTGGGGCCTTEEEEEECCC-
T ss_pred ECcCCcCCHHHHHHHHHhCCCcEEEEecCcc
Confidence 9999998865554443 66777777666653
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=229.11 Aligned_cols=245 Identities=22% Similarity=0.293 Sum_probs=168.8
Q ss_pred cccc----cCCCCccceeeeeecC--------CCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhc
Q 036593 20 LYLL----KTTNMRLSWVGISCDS--------RHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELG 87 (574)
Q Consensus 20 ~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 87 (574)
.+.| .....+|.|.|+.|.. ...++++|+++++.+. .+|..+.++++|++|+|++|.+. .+|..+.
T Consensus 47 ~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~ 124 (328)
T 4fcg_A 47 HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124 (328)
T ss_dssp HHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG
T ss_pred hhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh
Confidence 3557 3467889999998852 3578999999999998 67777888999999999999987 7888899
Q ss_pred CCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCC---------CCCCceeecccccCcccCchhc
Q 036593 88 KLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN---------LSKLEMLQASFNVIDGNIPSGI 158 (574)
Q Consensus 88 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~l 158 (574)
.+++|++|++++|.+. .+|..+.++++|++|++++|...+..|..+.. +++|++|++++|.+. .+|..+
T Consensus 125 ~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l 202 (328)
T 4fcg_A 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI 202 (328)
T ss_dssp GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG
T ss_pred ccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh
Confidence 9999999999999988 77888999999999999998777677766543 666666666666665 555556
Q ss_pred cCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcC
Q 036593 159 GNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIE 238 (574)
Q Consensus 159 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 238 (574)
.++++|++|++++|.+.. .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|
T Consensus 203 ~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----------- 270 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP----------- 270 (328)
T ss_dssp GGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-----------
T ss_pred cCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-----------
Confidence 666666666666665553 33345555566666665555555555555555555555555555444444
Q ss_pred eeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCc
Q 036593 239 YLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNN 294 (574)
Q Consensus 239 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (574)
..+..+++|++|++++|.+.+..|..+.++++++.+.+..+.
T Consensus 271 --------------~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 271 --------------LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp --------------TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred --------------hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 444455555555555555555555556666666666555443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=235.17 Aligned_cols=287 Identities=18% Similarity=0.170 Sum_probs=209.5
Q ss_pred cccCCCCccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCc
Q 036593 22 LLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK 101 (574)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 101 (574)
.|..+...|.|.++ .++++++++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|+
T Consensus 22 ~~~~~~~~C~~~~~-----------c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 22 SSNQASLSCDRNGI-----------CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -----CCEECTTSE-----------EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCccCCCCCCCeE-----------eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 34445555666543 456677776 4555444 488888888888876666678888888888888888
Q ss_pred CccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCc-hhccCCCCCCEEEccCC-cCCcCCC
Q 036593 102 LSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIP-SGIGNLSNLFDLDLRHN-NLQDQIP 179 (574)
Q Consensus 102 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~-~~~~~~~ 179 (574)
+.+..+..|.++++|++|++++|.+....+..+.++++|++|++++|.+....+ ..+.++++|++|++++| .+....+
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 887777888888888888888888875444447788888888888888874333 36788888888888887 4666666
Q ss_pred ccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCcc---
Q 036593 180 TEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLT--- 256 (574)
Q Consensus 180 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--- 256 (574)
..+.++++|++|++++|.+....+..+..+++|++|++++|.+. .++..+...+++|+.|++++|.+.......+.
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 77888888888888888888777888888888888888888875 56666555678888888888877654333322
Q ss_pred CCCCccEEeCCCCceee----cCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCC
Q 036593 257 NASKLIGLDLGSNSFSG----HIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGIL 331 (574)
Q Consensus 257 ~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 331 (574)
..+.++.+++.++.+.+ ..+..+..+++|+.|++++|.++..+... +..+++|++|++++|++....
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~--------~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI--------FDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCBCCCH
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHH--------HhcCCCCCEEEeeCCCccCcC
Confidence 34567777777776653 24556778889999999998887654332 577888999999988877643
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-30 Score=270.36 Aligned_cols=425 Identities=15% Similarity=0.108 Sum_probs=227.2
Q ss_pred CCCcEEEEEcCCCCCc---cccCCCc------------cCCCCCcEEEccCCcccccCchhhcC-CCC-CCEEEccCCc-
Q 036593 40 RHQRVKALNLSGMGLG---GTIPPHL------------GNLSFLMSLDVTLNNFYGHLPNELGK-LGR-LKFISFSFNK- 101 (574)
Q Consensus 40 ~~~~~~~l~l~~~~~~---~~~~~~~------------~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~- 101 (574)
+.+++++|+++++... +.+|..+ ..+++|++|+|++|.+.+..+..+.. ++. |++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 3567999999875321 1222222 27899999999999887665666655 455 9999999986
Q ss_pred Ccc-CCCccccCCCCCCEEEccCCcccccCC----cCCCCCCCCceeecccccCc----ccCchhccCCCCCCEEEccCC
Q 036593 102 LSG-SIPTWIGVLSKLQIMSLRNNNITGPIP----NSLFNLSKLEMLQASFNVID----GNIPSGIGNLSNLFDLDLRHN 172 (574)
Q Consensus 102 ~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~ 172 (574)
+.. ..+....++++|++|++++|.+.+... ..+..+++|++|+++.+.+. ..++..+.++++|++|+++++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 221 122334578999999999998764422 22345677777777776664 223333456666777776666
Q ss_pred cCCcCCCccccCCCCCCEEEccCCccc---ccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeeccccccee
Q 036593 173 NLQDQIPTEIGNLQNLESLALGTNNLS---GLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIG 249 (574)
Q Consensus 173 ~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 249 (574)
.+.. .+..+..+++|++|+++..... ......+..+++|+.+++.++... .
T Consensus 231 ~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~------------------------ 284 (592)
T 3ogk_B 231 EILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-E------------------------ 284 (592)
T ss_dssp BGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-T------------------------
T ss_pred cHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-H------------------------
Confidence 5543 3445555666666666532211 111223334445555544443211 2
Q ss_pred cCCcCccCCCCccEEeCCCCceeecCC-CCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccC----
Q 036593 250 TIPDSLTNASKLIGLDLGSNSFSGHIP-NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDS---- 324 (574)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~---- 324 (574)
.+..+..+++|++|++++|.+..... ..+..+++|+.|+++ +.+... .+......+++|++|++++
T Consensus 285 -l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~-------~l~~~~~~~~~L~~L~L~~g~~~ 355 (592)
T 3ogk_B 285 -MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR-------GLEVLAQYCKQLKRLRIERGADE 355 (592)
T ss_dssp -GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH-------HHHHHHHHCTTCCEEEEECCCCS
T ss_pred -HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH-------HHHHHHHhCCCCCEEEeecCccc
Confidence 22233445556666666655432221 224556677777666 222221 1122234566677777762
Q ss_pred -------CCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccc-cCCCCeEecc
Q 036593 325 -------NPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGT-LQQLQGLSLE 396 (574)
Q Consensus 325 -------~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~ 396 (574)
+.+++.... .....+++|++|+++.+.+++.....+.. +++|++|+++
T Consensus 356 ~~~~~~~~~~~~~~~~------------------------~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 356 QGMEDEEGLVSQRGLI------------------------ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp STTSSTTCCCCHHHHH------------------------HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred cccccccCccCHHHHH------------------------HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 222211000 11223556666666555555443333333 6666666664
Q ss_pred ----CCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCe--ecccCCccc-cCCCCCCeEeCCCCcceec
Q 036593 397 ----DNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNK--LTSSIPSSL-WSLEYILEINLSSNSLNDS 469 (574)
Q Consensus 397 ----~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~-~~~~~L~~L~L~~~~l~~~ 469 (574)
.+.+++. |. ...++..+..+++|+.|+++.|. +++.....+ ..+++|++|++++|.+++.
T Consensus 412 ~~~~~n~l~~~-p~------------~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 412 LLDREERITDL-PL------------DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp ECSCCSCCSSC-CC------------HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred ecCCCccccCc-hH------------HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence 3333321 00 00111224456677777776543 332222222 2366777777777776543
Q ss_pred -CCccccCCCCCCEEeCCCCcccccC-cccccCCCCCCEeeCCCCcccccCCccc-cCCcCCCeeeCCCC
Q 036593 470 -LPSNVQKLKVLRVLDLSRNQLSGNI-PSTIGALVDLETLSLASNQFQGPIPESV-GSLISLESLDLSGN 536 (574)
Q Consensus 470 -~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~n 536 (574)
.+..+..+++|++|++++|.+++.. +..+..+++|++|++++|+++......+ ..+|.+....+..+
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 2333456677777777777765332 2233457777777777777665433332 34455555444443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-26 Score=218.34 Aligned_cols=260 Identities=22% Similarity=0.273 Sum_probs=166.6
Q ss_pred CCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhh
Q 036593 259 SKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF 338 (574)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 338 (574)
+++++|++++|.+....+..|.++++|+.|++++|.+...+. ....+..+++|++|++++|.+.
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~~~~~~L~~L~Ls~n~i~---------- 91 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC------CSQSDFGTTSLKYLDLSFNGVI---------- 91 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE------EEHHHHSCSCCCEEECCSCSEE----------
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC------cccccccccccCEEECCCCccc----------
Confidence 456666666666664444445666666666666666543210 0112334555566665555433
Q ss_pred ccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCC-cCccccCCCCeEeccCCcccccCCCCCceEEccCCe
Q 036593 339 SASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIP-TSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNK 417 (574)
Q Consensus 339 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~ 417 (574)
.++..+..+++|++|++++|.+.+... ..+..+++|++|++++|++++
T Consensus 92 ----------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------- 140 (306)
T 2z66_A 92 ----------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--------------- 140 (306)
T ss_dssp ----------------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE---------------
T ss_pred ----------------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc---------------
Confidence 223345667777777777777765544 456677777777777776653
Q ss_pred eeecCCccCcCCCCCCeEECCCCeecc-cCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcc
Q 036593 418 LSGHIPPCLASLTSLRELRLGSNKLTS-SIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPS 496 (574)
Q Consensus 418 l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 496 (574)
..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+.
T Consensus 141 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 141 ---AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp ---CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred ---cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 344556677788888888887765 4667777778888888888887777677777778888888888887766666
Q ss_pred cccCCCCCCEeeCCCCcccccCCccccCCc-CCCeeeCCCCcccccCC-cC-cccCCCCCeEeccCCccccccCC
Q 036593 497 TIGALVDLETLSLASNQFQGPIPESVGSLI-SLESLDLSGNNFSGKIP-KS-LEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 497 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~-~~-l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
.+..+++|++|++++|.+.+..+..+..++ +|+.|++++|++..... .. ..-+...+.+.+..+++....|.
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 677778888888888887777777777774 78888888887764211 11 11223344445555555555554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-25 Score=225.23 Aligned_cols=250 Identities=21% Similarity=0.243 Sum_probs=191.1
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEcc
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (574)
....+++++.+++. +|..+. +++++|+|++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34578888888874 665554 689999999999988888889999999999999999988888889999999999999
Q ss_pred CCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccC-CcCCcCCCccccCCCCCCEEEccCCccccc
Q 036593 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRH-NNLQDQIPTEIGNLQNLESLALGTNNLSGL 201 (574)
Q Consensus 123 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 201 (574)
+|.+....+..+..+++|++|++++|.+....+..+.++++|++|++++ +.+....+..|.++++|++|++++|.+...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9998866666788899999999999988866666788899999999988 445555556678888888888888887744
Q ss_pred CchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccC
Q 036593 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281 (574)
Q Consensus 202 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 281 (574)
+ .+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+....+..|..+++|++|++++|.++...+..+..
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred -c-cccccccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 2 466777788888887777744444443 6677777777777776666666666777777777777766555555666
Q ss_pred CCcCceEEccCCccccc
Q 036593 282 LRHLNVLSIRTNNLTTE 298 (574)
Q Consensus 282 l~~L~~L~l~~~~~~~~ 298 (574)
+++|+.|++++|++...
T Consensus 289 l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CTTCCEEECCSSCEECS
T ss_pred ccCCCEEEccCCCcCCC
Confidence 66777777776666553
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=223.74 Aligned_cols=250 Identities=20% Similarity=0.227 Sum_probs=195.3
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEcc
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (574)
....+++++.+++ .+|..+. +++++|+|++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3457888888887 4666554 689999999999988778899999999999999999998888899999999999999
Q ss_pred CCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCC-cCCcCCCccccCCCCCCEEEccCCccccc
Q 036593 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHN-NLQDQIPTEIGNLQNLESLALGTNNLSGL 201 (574)
Q Consensus 123 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 201 (574)
+|.+....+..+..+++|++|++++|.+....+..+.++++|++|+++++ .+....+..|.++++|++|++++|.+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 99998666667899999999999999988666677889999999999884 45555556788888888898888888743
Q ss_pred CchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccC
Q 036593 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281 (574)
Q Consensus 202 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 281 (574)
+ .+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..|..+++|++|++++|.++...+..|..
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred -c-ccCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 3 366777788888888777744444443 6777777777777777666666777777777777777776655566666
Q ss_pred CCcCceEEccCCccccc
Q 036593 282 LRHLNVLSIRTNNLTTE 298 (574)
Q Consensus 282 l~~L~~L~l~~~~~~~~ 298 (574)
+++|+.|++++|++...
T Consensus 278 l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTCCEEECCSSCEECS
T ss_pred ccCCCEEEcCCCCccCC
Confidence 77777777777766553
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=215.38 Aligned_cols=247 Identities=20% Similarity=0.259 Sum_probs=158.4
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccC--CCccccCCCCCCEEEccC
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGS--IPTWIGVLSKLQIMSLRN 123 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~ 123 (574)
.+++++++++ .+|..+. ++|++|++++|.+.+..+..|+++++|++|++++|.+... .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4555666666 3454443 5788888888887644444578888888888888877633 255666778888888888
Q ss_pred CcccccCCcCCCCCCCCceeecccccCcccCc-hhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccc-c
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNVIDGNIP-SGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSG-L 201 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~ 201 (574)
|.+. ..+..+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+....+..+..+++|++|++++|.+.. .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 8776 455557777777777777777764333 456777777777777777766666667777777777777777654 4
Q ss_pred CchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccC
Q 036593 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281 (574)
Q Consensus 202 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 281 (574)
.+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 555566666677777766666533343333 4555666666655555444444555555666666666555555555555
Q ss_pred CC-cCceEEccCCcccc
Q 036593 282 LR-HLNVLSIRTNNLTT 297 (574)
Q Consensus 282 l~-~L~~L~l~~~~~~~ 297 (574)
++ +|+.|++++|++..
T Consensus 246 ~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCTTCCEEECTTCCEEC
T ss_pred hhccCCEEEccCCCeec
Confidence 53 55555555555543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-29 Score=267.64 Aligned_cols=246 Identities=14% Similarity=0.163 Sum_probs=147.6
Q ss_pred cEEEccCCcccccCchhhcCCCCCCEEEccCCcCcc---CCC------------ccccCCCCCCEEEccCCcccccCCcC
Q 036593 69 MSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSG---SIP------------TWIGVLSKLQIMSLRNNNITGPIPNS 133 (574)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~------------~~~~~l~~L~~L~l~~~~~~~~~~~~ 133 (574)
+.++++++... .....+..+++|++|+++++.... ..| .....+++|++|+++++.+.+..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 35666655432 223457889999999999975221 111 11346889999999998877554444
Q ss_pred CC-CCCCCceeecccc-cCccc-CchhccCCCCCCEEEccCCcCCcCCCccc----cCCCCCCEEEccCCc--ccc-cCc
Q 036593 134 LF-NLSKLEMLQASFN-VIDGN-IPSGIGNLSNLFDLDLRHNNLQDQIPTEI----GNLQNLESLALGTNN--LSG-LIP 203 (574)
Q Consensus 134 ~~-~l~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~--~~~-~~~ 203 (574)
+. .+++|++|++++| .+... ++..+.++++|++|++++|.+.+..+..+ ..+++|++|+++.+. +.. ...
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 54 5889999999988 44322 33444578999999999988765544444 366789999998886 221 111
Q ss_pred hhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccc-------eecCCcCccCCCCccEE-eCCCCceeecC
Q 036593 204 PAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL-------IGTIPDSLTNASKLIGL-DLGSNSFSGHI 275 (574)
Q Consensus 204 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------~~~~~~~~~~~~~L~~L-~l~~~~~~~~~ 275 (574)
.....+++|++|++++|.....++..+. .+++|+.|+++.+.. .. .+..+..+++|+.+ .+.+... ...
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l 281 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQ-RAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYL 281 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHH-HCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHh-cCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhH
Confidence 2234568899999988832223444333 678888888665431 11 11234566666666 3333221 122
Q ss_pred CCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCC
Q 036593 276 PNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSN 325 (574)
Q Consensus 276 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 325 (574)
+..+..+++|++|++++|.+.... +...+..+++|++|+++++
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~-------l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYD-------LVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHH-------HHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHhhCCCCEEEccCCCCCHHH-------HHHHHhcCCCcCEEeCcCc
Confidence 333335666777777666643221 1222445666666666655
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=209.95 Aligned_cols=206 Identities=21% Similarity=0.221 Sum_probs=102.3
Q ss_pred CCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCC-CcccCCcCccccCCCCeE
Q 036593 315 RKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFND-LNGTIPTSVGTLQQLQGL 393 (574)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L 393 (574)
+++++|+++++.++...+..+..+. +++.|+++++.+....+..+..+++|++|++++|. +....+..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4566666666665544433333222 44444444444443333344444444444444443 333333334444444444
Q ss_pred eccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCcc
Q 036593 394 SLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSN 473 (574)
Q Consensus 394 ~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 473 (574)
++++|++++ ..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..
T Consensus 111 ~l~~n~l~~------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 111 HLDRCGLQE------------------LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp ECTTSCCCC------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ECCCCcCCE------------------ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 444443331 22344455555555555555555444444555555555555555555444444
Q ss_pred ccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 474 VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 474 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 555555555555555555444555555555555555555555443344555555555555555554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=220.14 Aligned_cols=246 Identities=22% Similarity=0.227 Sum_probs=144.8
Q ss_pred ccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhcc
Q 036593 261 LIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSA 340 (574)
Q Consensus 261 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 340 (574)
...++..+..++ ..|..+. ++++.|++++|.+...... .+..+++|++|++++|.++..
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~--------~~~~l~~L~~L~Ls~n~i~~~---------- 114 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQAD--------TFRHLHHLEVLQLGRNSIRQI---------- 114 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTT--------TTTTCTTCCEEECCSSCCCEE----------
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHH--------HcCCCCCCCEEECCCCccCCc----------
Confidence 445666665555 2343332 4677777777766654322 256666777777766665543
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG 420 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~ 420 (574)
.+..|..+++|++|++++|.++...+..|..+++|++|++++|+++.
T Consensus 115 ---------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------ 161 (452)
T 3zyi_A 115 ---------------EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES------------------ 161 (452)
T ss_dssp ---------------CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------
T ss_pred ---------------ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce------------------
Confidence 33445555666666666666665555555566666666666665542
Q ss_pred cCCccCcCCCCCCeEECCCC-eecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCccccc
Q 036593 421 HIPPCLASLTSLRELRLGSN-KLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIG 499 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 499 (574)
..+..|..+++|++|++++| .+.......+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..|.
T Consensus 162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 239 (452)
T 3zyi_A 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFH 239 (452)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCccccc
Confidence 22334556666666666663 33323334555666666666666666543 2355566666666666666655566666
Q ss_pred CCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcc
Q 036593 500 ALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNML 562 (574)
Q Consensus 500 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~ 562 (574)
++++|+.|++++|.+.+..+..|..+++|+.|++++|++....+..|..+++|+.|++++|++
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 666666666666666665566666666666666666666655555566666666666666654
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=218.98 Aligned_cols=248 Identities=21% Similarity=0.227 Sum_probs=132.6
Q ss_pred ccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhcc
Q 036593 261 LIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSA 340 (574)
Q Consensus 261 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 340 (574)
...++..+..++ ..|..+. ++++.|++++|.+...... .+..+++|++|++++|.+....+..+..+.
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~--------~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~- 112 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVN--------SFKHLRHLEILQLSRNHIRTIEIGAFNGLA- 112 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTT--------TTSSCSSCCEEECCSSCCCEECGGGGTTCS-
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHH--------HhhCCCCCCEEECCCCcCCccChhhccCCc-
Confidence 556777776666 3444443 5788888888887765433 377788888888888877755444443332
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG 420 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~ 420 (574)
+|+.|++++|.+....+..+..+++|++|++++|.+.......|..+++|++|++++|+....
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~----------------- 175 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY----------------- 175 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-----------------
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce-----------------
Confidence 455555555544443333444455555555555544444444444445555555444322111
Q ss_pred cCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccC
Q 036593 421 HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA 500 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 500 (574)
..+..|..+++|++|++++|.++ ..+ .+..+++|++|++++|.+.+..+..|..+++|+.|++++|++....+..|.+
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred eCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 12233445555555555555554 222 2444555555555555555544555555555555555555555444455555
Q ss_pred CCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 501 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 501 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+++|++|+|++|+++...+..|..+++|+.|++++|++.
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 555555555555555444444555555555555555544
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-29 Score=261.88 Aligned_cols=457 Identities=12% Similarity=0.085 Sum_probs=274.9
Q ss_pred CCCccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccC---------------chhhcCCC
Q 036593 26 TNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHL---------------PNELGKLG 90 (574)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~---------------~~~~~~~~ 90 (574)
+..+.+|..+.. ...++++++..... .....+..+++|++|+++++.....+ ......++
T Consensus 31 s~vck~W~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~ 105 (594)
T 2p1m_B 31 SLVCKSWYEIER----WCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105 (594)
T ss_dssp HTSCHHHHHHHH----HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhh----hhceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence 355667766522 12345666554332 22345678899999999998633211 12345789
Q ss_pred CCCEEEccCCcCccCCCcccc-CCCCCCEEEccCC-ccccc-CCcCCCCCCCCceeecccccCcccCchhc----cCCCC
Q 036593 91 RLKFISFSFNKLSGSIPTWIG-VLSKLQIMSLRNN-NITGP-IPNSLFNLSKLEMLQASFNVIDGNIPSGI----GNLSN 163 (574)
Q Consensus 91 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~ 163 (574)
+|++|++++|.+.+..+..+. .+++|++|++++| .+... .+..+..+++|++|++++|.+.+..+..+ ..+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 999999999998877666675 6999999999998 44422 33334579999999999998764433333 47789
Q ss_pred CCEEEccCCc--CCcC-CCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCc-------ccccCCchhhcC
Q 036593 164 LFDLDLRHNN--LQDQ-IPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQ-------FSGRLPSTIGHS 233 (574)
Q Consensus 164 L~~L~l~~~~--~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~ 233 (574)
|++|+++++. +... ....+..+++|++|++++|......+..+..+++|++|++..+. +. .++..+ ..
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l-~~ 263 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL-SG 263 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH-HT
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH-hc
Confidence 9999999986 2211 11223457999999999984333466778889999999976553 22 233344 37
Q ss_pred CCCcCee-ecccccceecCCcCccCCCCccEEeCCCCceeecCC-CCccCCCcCceEEccCCcccccCCCCccccccccc
Q 036593 234 LPNIEYL-TLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIP-NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSL 311 (574)
Q Consensus 234 l~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 311 (574)
+++|+.+ .+..... ...+..+..+++|++|++++|.+..... ..+..+++|++|++++| +...+ +....
T Consensus 264 ~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~-------l~~l~ 334 (594)
T 2p1m_B 264 CKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAG-------LEVLA 334 (594)
T ss_dssp CTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHH-------HHHHH
T ss_pred CCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHH-------HHHHH
Confidence 8899988 3332221 1223334467899999999998664322 23567899999999987 33221 22223
Q ss_pred cCCCCCcEEEccCC---------CCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCc
Q 036593 312 TNCRKLSYLVLDSN---------PLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPT 382 (574)
Q Consensus 312 ~~~~~L~~L~l~~~---------~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 382 (574)
..+++|++|++.++ .+++.....+ ...+++|+.|.+..+.+++....
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l------------------------~~~~~~L~~L~~~~~~l~~~~~~ 390 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSV------------------------SMGCPKLESVLYFCRQMTNAALI 390 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH------------------------HHHCTTCCEEEEEESCCCHHHHH
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHH------------------------HHhchhHHHHHHhcCCcCHHHHH
Confidence 45889999998543 2221111111 12356666776666666544333
Q ss_pred Ccc-ccCCCCeEecc--C----CcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccC-CC
Q 036593 383 SVG-TLQQLQGLSLE--D----NNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWS-LE 454 (574)
Q Consensus 383 ~~~-~~~~L~~L~l~--~----~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~ 454 (574)
.+. .+++|++|+++ + +.+++. | ....++..+..+++|+.|++++ .++......+.. ++
T Consensus 391 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~-~------------~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 391 TIARNRPNMTRFRLCIIEPKAPDYLTLE-P------------LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK 456 (594)
T ss_dssp HHHHHCTTCCEEEEEESSTTCCCTTTCC-C------------THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred HHHhhCCCcceeEeecccCCCcccccCC-c------------hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence 333 46677777776 2 233310 0 0001112244566777777765 444333333333 66
Q ss_pred CCCeEeCCCCcceecCCccc-cCCCCCCEEeCCCCcccccCcc-cccCCCCCCEeeCCCCcccccCCccc-cCCcCCCee
Q 036593 455 YILEINLSSNSLNDSLPSNV-QKLKVLRVLDLSRNQLSGNIPS-TIGALVDLETLSLASNQFQGPIPESV-GSLISLESL 531 (574)
Q Consensus 455 ~L~~L~L~~~~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L 531 (574)
+|++|++++|.+++.....+ ..+++|++|++++|.+++.... ....+++|++|++++|+++......+ ..++.|+..
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~ 536 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE 536 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEE
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEE
Confidence 67777777776654433333 4567777777777776533322 33446677777777776654333333 344555554
Q ss_pred eCCCC
Q 036593 532 DLSGN 536 (574)
Q Consensus 532 ~l~~n 536 (574)
.+..+
T Consensus 537 ~~~~~ 541 (594)
T 2p1m_B 537 VIDER 541 (594)
T ss_dssp EECSS
T ss_pred EecCC
Confidence 44444
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=220.10 Aligned_cols=258 Identities=21% Similarity=0.243 Sum_probs=217.0
Q ss_pred CCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEE
Q 036593 41 HQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMS 120 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 120 (574)
.+++++|+++++.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|++.+..+..++++++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 36899999999999987777899999999999999999888788899999999999999999976666799999999999
Q ss_pred ccCCcccccCC-cCCCCCCCCceeeccccc-CcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcc
Q 036593 121 LRNNNITGPIP-NSLFNLSKLEMLQASFNV-IDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNL 198 (574)
Q Consensus 121 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 198 (574)
+++|.+....+ ..+..+++|++|++++|. +....+..+.++++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999984433 478899999999999984 6656677899999999999999999988889999999999999999998
Q ss_pred cccCchhhcccCCCcEEEcccCcccccCCchhh--cCCCCcCeeecccccceec----CCcCccCCCCccEEeCCCCcee
Q 036593 199 SGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIG--HSLPNIEYLTLAINNLIGT----IPDSLTNASKLIGLDLGSNSFS 272 (574)
Q Consensus 199 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 272 (574)
.......+..+++|+.|++++|.+.+..+..+. ...+.++.++++.+.+... .+..+..+++|++|++++|.++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 755445556789999999999998854433322 2356788888887766542 3456778999999999999998
Q ss_pred ecCCCCccCCCcCceEEccCCccccc
Q 036593 273 GHIPNTFGNLRHLNVLSIRTNNLTTE 298 (574)
Q Consensus 273 ~~~~~~l~~l~~L~~L~l~~~~~~~~ 298 (574)
......|..+++|++|++++|++...
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 55445568999999999999998764
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-25 Score=212.61 Aligned_cols=237 Identities=19% Similarity=0.257 Sum_probs=176.9
Q ss_pred CCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceee
Q 036593 65 LSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQ 144 (574)
Q Consensus 65 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 144 (574)
.+++++|++++|.+. .+|..+..+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467888888888876 66777777888888888888887 77778888888888888888887 6677778888888888
Q ss_pred cccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccc
Q 036593 145 ASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224 (574)
Q Consensus 145 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 224 (574)
+++|...+.+|..+.. . .....+.++++|++|++++|.+. .+|..+..+++|++|++++|.+.
T Consensus 157 L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp EEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred CCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence 8887766666654433 0 01122444666666666666665 44555666667777777776666
Q ss_pred cCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCcc
Q 036593 225 RLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQ 304 (574)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 304 (574)
.+|..+. .+++|++|++++|.+....+..+..+++|++|++++|.+.+..|..+.++++|+.|++++|++...
T Consensus 220 ~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~------ 292 (328)
T 4fcg_A 220 ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR------ 292 (328)
T ss_dssp CCCGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC------
T ss_pred cCchhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh------
Confidence 4555443 667777777777777666777788889999999999988888898999999999999999987764
Q ss_pred ccccccccCCCCCcEEEccCCCCCCC
Q 036593 305 WSFLSSLTNCRKLSYLVLDSNPLGGI 330 (574)
Q Consensus 305 ~~~~~~l~~~~~L~~L~l~~~~~~~~ 330 (574)
++..+..+++++.+++..+.+...
T Consensus 293 --iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 293 --LPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp --CCGGGGGSCTTCEEECCGGGSCC-
T ss_pred --ccHHHhhccCceEEeCCHHHHHHH
Confidence 456689999999999987765544
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=204.45 Aligned_cols=225 Identities=20% Similarity=0.208 Sum_probs=165.2
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 124 (574)
+++++++.+++. +|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 678888888874 55544 468999999999988777778899999999999999988888888999999999999998
Q ss_pred c-ccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCc
Q 036593 125 N-ITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIP 203 (574)
Q Consensus 125 ~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 203 (574)
. +....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 765557778888888888888888876667777888888888888888776666667777788888887777766555
Q ss_pred hhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCC
Q 036593 204 PAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLR 283 (574)
Q Consensus 204 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 283 (574)
..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..++
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHP-------------------------HAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECT-------------------------TTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HHhcCccccCEEECCCCcccccCH-------------------------hHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 556666666666666666553333 3444455555555555555544444455566
Q ss_pred cCceEEccCCcccc
Q 036593 284 HLNVLSIRTNNLTT 297 (574)
Q Consensus 284 ~L~~L~l~~~~~~~ 297 (574)
+|+.|++++|++..
T Consensus 226 ~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 226 ALQYLRLNDNPWVC 239 (285)
T ss_dssp TCCEEECCSSCEEC
T ss_pred ccCEEeccCCCccC
Confidence 66666666666554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-26 Score=220.80 Aligned_cols=247 Identities=19% Similarity=0.201 Sum_probs=114.4
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCccc-ccCchhhc-------CCCCCCEEEccCCcCccCCCccc--cC
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFY-GHLPNELG-------KLGRLKFISFSFNKLSGSIPTWI--GV 112 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--~~ 112 (574)
+++.++++++.+ .+|..+... |++|++++|.+. ..++..+. ++++|++|++++|++.+..|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 344444555554 334333322 555555555552 23333333 45555555555555555555443 55
Q ss_pred CCCCCEEEccCCcccccCCcCCCCC-----CCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcC--CCccc--c
Q 036593 113 LSKLQIMSLRNNNITGPIPNSLFNL-----SKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ--IPTEI--G 183 (574)
Q Consensus 113 l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l--~ 183 (574)
+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..++++++|++|++++|.+... .+..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 55555555555555533 4434333 4555555555555444444455555555555555543321 11111 4
Q ss_pred CCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCC-cCccCCCCcc
Q 036593 184 NLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP-DSLTNASKLI 262 (574)
Q Consensus 184 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~ 262 (574)
.+++|++|++++|.+... ...+..++..+++|+.|++++|.+....+ ..+..+++|+
T Consensus 199 ~l~~L~~L~L~~N~l~~~----------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETP----------------------SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp SCTTCCEEECTTSCCCCH----------------------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred cCCCCCEEECCCCcCcch----------------------HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 445555555555544411 01122222234444444444444443321 2233445555
Q ss_pred EEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCC
Q 036593 263 GLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGG 329 (574)
Q Consensus 263 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 329 (574)
+|++++|.++ ..|..+. ++|++|++++|.++..+ .+..+++|++|++++|++++
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p----------~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNP----------SPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCC----------CTTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCCh----------hHhhCCCCCEEeccCCCCCC
Confidence 5555555554 3333333 55555555555554431 14445555556665555543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-23 Score=213.31 Aligned_cols=260 Identities=27% Similarity=0.340 Sum_probs=166.1
Q ss_pred CcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCC
Q 036593 236 NIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCR 315 (574)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (574)
+++.++++++.+.. .+..+. ++|++|++++|.++. .+. .+++|++|++++|.++..+. .++
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~------------~l~ 101 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV------------LPP 101 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC------------CCT
T ss_pred CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC------------CCC
Confidence 46777777776663 333333 567777777776663 332 45677777777776654321 356
Q ss_pred CCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEec
Q 036593 316 KLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSL 395 (574)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 395 (574)
+|++|++++|.++.... .+++|+.|++++|.++.... .+++|++|++
T Consensus 102 ~L~~L~Ls~N~l~~l~~-----------------------------~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~L 148 (622)
T 3g06_A 102 GLLELSIFSNPLTHLPA-----------------------------LPSGLCKLWIFGNQLTSLPV----LPPGLQELSV 148 (622)
T ss_dssp TCCEEEECSCCCCCCCC-----------------------------CCTTCCEEECCSSCCSCCCC----CCTTCCEEEC
T ss_pred CCCEEECcCCcCCCCCC-----------------------------CCCCcCEEECCCCCCCcCCC----CCCCCCEEEC
Confidence 66677776666654322 33455555555555543221 1255555555
Q ss_pred cCCcccc--cCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCcc
Q 036593 396 EDNNLEG--SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSN 473 (574)
Q Consensus 396 ~~~~~~~--~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 473 (574)
++|++++ ..+..++.|++++|.+++ +| ..+++|+.|++++|.+++ ++. .+++|+.|++++|.+... +.
T Consensus 149 s~N~l~~l~~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~~- 218 (622)
T 3g06_A 149 SDNQLASLPALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL-PA- 218 (622)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-CC-
T ss_pred cCCcCCCcCCccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc-CC-
Confidence 5555543 233455566666665553 44 346788888888888864 332 246788888888887643 32
Q ss_pred ccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCC
Q 036593 474 VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLK 553 (574)
Q Consensus 474 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 553 (574)
.+++|++|++++|.++. ++ ..+++|+.|++++|.++ .+|. .+++|+.|++++|++. .+|..|..+++|+
T Consensus 219 --~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~ 287 (622)
T 3g06_A 219 --LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSET 287 (622)
T ss_dssp --CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred --CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccC
Confidence 24778888888888874 33 44678888888888887 4444 5578888888888888 5677788888888
Q ss_pred eEeccCCccccccCC
Q 036593 554 QFNVSQNMLEGEIPV 568 (574)
Q Consensus 554 ~l~l~~n~~~~~~p~ 568 (574)
.|++++|++++.+|.
T Consensus 288 ~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 288 TVNLEGNPLSERTLQ 302 (622)
T ss_dssp EEECCSCCCCHHHHH
T ss_pred EEEecCCCCCCcCHH
Confidence 888888888877654
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=197.07 Aligned_cols=215 Identities=22% Similarity=0.255 Sum_probs=169.8
Q ss_pred CCccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCC
Q 036593 27 NMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSI 106 (574)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 106 (574)
.+.|.|.|..|.- ....+.+++++++++. +|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+....
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 4789999888753 3456789999999984 666554 68999999999998766778999999999999999998777
Q ss_pred CccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCC
Q 036593 107 PTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQ 186 (574)
Q Consensus 107 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 186 (574)
+..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 77789999999999999999866666778899999999999988876667788888999999998888876666788888
Q ss_pred CCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeeccccc
Q 036593 187 NLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINN 246 (574)
Q Consensus 187 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 246 (574)
+|++|++++|.+....+..|..+++|++|++++|.+. .++...+..+++|+.|++++|.
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCC
Confidence 8888888888887766666777778888888777766 4443333345555555555443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-25 Score=215.68 Aligned_cols=239 Identities=21% Similarity=0.175 Sum_probs=135.1
Q ss_pred CCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCcccccccccc
Q 036593 233 SLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLT 312 (574)
Q Consensus 233 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 312 (574)
.+++|++|++++|.+....+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... .
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-------------~ 96 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-------------L 96 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-------------E
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-------------c
Confidence 33444555555444444333445555555566665555543332 55566666666666655432 2
Q ss_pred CCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCe
Q 036593 313 NCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQG 392 (574)
Q Consensus 313 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 392 (574)
..++|++|++++|.++... ...+++|++|++++|.+++..+..+..+++|++
T Consensus 97 ~~~~L~~L~l~~n~l~~~~----------------------------~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 97 VGPSIETLHAANNNISRVS----------------------------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp ECTTCCEEECCSSCCSEEE----------------------------ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred CCCCcCEEECCCCccCCcC----------------------------ccccCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence 2355666666655544221 112455666777766666655556666666666
Q ss_pred EeccCCcccccCCCCCceEEccCCeeeecCCccC-cCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCC
Q 036593 393 LSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCL-ASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLP 471 (574)
Q Consensus 393 L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 471 (574)
|++++|++++.. +..+ ..+++|++|++++|.+++... ...+++|++|++++|.+.+..+
T Consensus 149 L~Ls~N~l~~~~------------------~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 149 LDLKLNEIDTVN------------------FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp EECTTSCCCEEE------------------GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG
T ss_pred EECCCCCCCccc------------------HHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchh
Confidence 666666665321 1222 345667777777776654321 2235666677776666654433
Q ss_pred ccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccc-ccCCccccCCcCCCeeeCCCC
Q 036593 472 SNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQ-GPIPESVGSLISLESLDLSGN 536 (574)
Q Consensus 472 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n 536 (574)
. +..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+. +..+..+..+++|+.+++++|
T Consensus 209 ~-~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 209 E-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp G-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred h-hcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 3 5666667777777776663 4455666667777777777666 445555666666666666644
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-25 Score=213.27 Aligned_cols=199 Identities=20% Similarity=0.231 Sum_probs=149.7
Q ss_pred CCCCCcEEECcCCCCcccCCcCc--cccCCCCeEeccCCcccccC----------CCCCceEEccCCeeeecCCccCcCC
Q 036593 362 NLRGLILLTLDFNDLNGTIPTSV--GTLQQLQGLSLEDNNLEGSI----------PYDLCHLELNGNKLSGHIPPCLASL 429 (574)
Q Consensus 362 ~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~----------~~~l~~l~l~~~~l~~~~~~~~~~~ 429 (574)
.+++|++|++++|.+++..+..+ ..+++|++|++++|++++.. +..+++|++++|++++..+..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 45556666666666555444443 55566666666666555430 1456666666666665666889999
Q ss_pred CCCCeEECCCCeeccc--CCcc--ccCCCCCCeEeCCCCcceec---CCccccCCCCCCEEeCCCCcccccCc-ccccCC
Q 036593 430 TSLRELRLGSNKLTSS--IPSS--LWSLEYILEINLSSNSLNDS---LPSNVQKLKVLRVLDLSRNQLSGNIP-STIGAL 501 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~--~~~~--~~~~~~L~~L~L~~~~l~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~ 501 (574)
++|++|++++|++.+. .+.. +..+++|++|++++|.+.+. ....+..+++|++|++++|.+.+..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 9999999999997643 2223 37899999999999999732 22445678999999999999987653 456678
Q ss_pred CCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccc
Q 036593 502 VDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 502 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~ 565 (574)
++|++|++++|+++ .+|..+. ++|+.|++++|++... |. +..+++|++|++++|++++.
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 99999999999999 6777766 8999999999999965 65 89999999999999999863
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=208.91 Aligned_cols=239 Identities=21% Similarity=0.185 Sum_probs=136.3
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEcc
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (574)
++...+++.+.+.......+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 44555666666655555555566677777777777766666677777777777777777664433 6677777777777
Q ss_pred CCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccC
Q 036593 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLI 202 (574)
Q Consensus 123 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 202 (574)
+|.+.+. + ..++|++|++++|.+.+..+. .+++|++|++++|.+....+..+..+++|++|++++|.+....
T Consensus 89 ~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 7766522 1 225666666666665533222 2455566666655555444444555555555555555554443
Q ss_pred chhhc-ccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccC
Q 036593 203 PPAIF-NISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281 (574)
Q Consensus 203 ~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 281 (574)
+..+. .+++|++|++++|.+ .... ....+++|++|++++|.++.. +..+..
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l-------------------------~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~ 212 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFI-------------------------YDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQS 212 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCC-------------------------CEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGG
T ss_pred HHHHhhccCcCCEEECCCCcC-------------------------cccc--cccccccCCEEECCCCcCCcc-hhhhcc
Confidence 33332 344555555555444 3331 122355566666666666543 223556
Q ss_pred CCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCC
Q 036593 282 LRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLG 328 (574)
Q Consensus 282 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 328 (574)
+++|+.|++++|.+... ...+..+++|+.|++++|++.
T Consensus 213 l~~L~~L~L~~N~l~~l---------~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 213 AAGVTWISLRNNKLVLI---------EKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GTTCSEEECTTSCCCEE---------CTTCCCCTTCCEEECTTCCCB
T ss_pred cCcccEEECcCCcccch---------hhHhhcCCCCCEEEccCCCcc
Confidence 66666666666666542 223555666666666666665
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=210.58 Aligned_cols=267 Identities=25% Similarity=0.305 Sum_probs=141.1
Q ss_pred CCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeec
Q 036593 163 NLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTL 242 (574)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 242 (574)
++++|+++++.++ ..|..+. ++|++|++++|.+.. +|. .+++|++|++++|.+. .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence 5777777777776 3344333 667777777776653 232 3566777777766655 3443 3455555555
Q ss_pred ccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEc
Q 036593 243 AINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVL 322 (574)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 322 (574)
++|.+..... .+++|+.|++++|.++. .|. .+++|++|++++|.+...+ ..+++|+.|++
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~------------~~~~~L~~L~L 168 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLP------------ALPSELCKLWA 168 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC------------CCCTTCCEEEC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCcC------------CccCCCCEEEC
Confidence 5555443211 33445555555544432 121 1244444444444433221 01123333333
Q ss_pred cCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccc
Q 036593 323 DSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG 402 (574)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 402 (574)
++|.++ . +| ..+++|+.|++++|.+++... ..++|+.|++++|.++
T Consensus 169 ~~N~l~-------------------------~-l~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~- 214 (622)
T 3g06_A 169 YNNQLT-------------------------S-LP---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT- 214 (622)
T ss_dssp CSSCCS-------------------------C-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-
T ss_pred CCCCCC-------------------------C-Cc---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-
Confidence 333322 1 11 233555555665555543211 1244555555555444
Q ss_pred cCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCE
Q 036593 403 SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRV 482 (574)
Q Consensus 403 ~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~ 482 (574)
.++. .+++|+.|++++|.+++ ++ ..+++|++|++++|.+.. +|. .+++|++
T Consensus 215 ------------------~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~ 265 (622)
T 3g06_A 215 ------------------SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLS 265 (622)
T ss_dssp ------------------SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred ------------------ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcE
Confidence 2222 23667777777777763 33 345677777777777653 232 4567777
Q ss_pred EeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCC
Q 036593 483 LDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL 525 (574)
Q Consensus 483 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~ 525 (574)
|++++|.+. .+|..+.++++|+.|+|++|.+.+..+..+..+
T Consensus 266 L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp EECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred EeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 777777777 445667777777777777777766555544433
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-23 Score=193.35 Aligned_cols=209 Identities=21% Similarity=0.213 Sum_probs=155.5
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG 420 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~ 420 (574)
+++.|+++++.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------ 90 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS------------------ 90 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE------------------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc------------------
Confidence 44444444444444444566777888888888888877766677778888888888777763
Q ss_pred cCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceec-CCccccCCCCCCEEeCCCCcccccCccccc
Q 036593 421 HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDS-LPSNVQKLKVLRVLDLSRNQLSGNIPSTIG 499 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 499 (574)
..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|++.+..+..+.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence 3345677788888888888888766666788888888888888888764 477788888888888888888866666676
Q ss_pred CCCCCC----EeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCC
Q 036593 500 ALVDLE----TLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 500 ~~~~L~----~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
.+++|+ +|++++|.+.+..+..+.. .+|+.|++++|.+....+..|..+++|+.|++++|++....|.
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred hhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 666666 7888888888655555444 4788888888888866556678888888888888888877663
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=189.47 Aligned_cols=203 Identities=28% Similarity=0.267 Sum_probs=134.7
Q ss_pred CCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEec
Q 036593 316 KLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSL 395 (574)
Q Consensus 316 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 395 (574)
..+.++++++.++.+... .+++++.|+++++.+....+..+..+++|++|++++|.++......|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~----~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN----IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSC----CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCC----CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 467888888877754321 2236677777777666555556666777777777777666555555666666776666
Q ss_pred cCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCcccc
Q 036593 396 EDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQ 475 (574)
Q Consensus 396 ~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 475 (574)
++|+++. ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+..+.
T Consensus 93 ~~n~l~~------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 93 TDNKLQA------------------LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp CSSCCCC------------------CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCcCCc------------------CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 6666552 2224456667777777777777666666666777777777777777665555566
Q ss_pred CCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 476 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
.+++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|+.|++++|++..
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 77777777777777765555566667777777777777775555556667777777777777653
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=190.97 Aligned_cols=223 Identities=22% Similarity=0.225 Sum_probs=160.6
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCc
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNN 125 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 125 (574)
.+++++..+. .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4566666665 3565554 589999999999887767788899999999999999887777788999999999999998
Q ss_pred ccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcC-CCccccCCCCCCEEEccCCcccccCch
Q 036593 126 ITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ-IPTEIGNLQNLESLALGTNNLSGLIPP 204 (574)
Q Consensus 126 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~ 204 (574)
+....+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+... .+..+..+++|++|++++|.+....+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 8877777788889999999988888765555688888888888888888754 477788888888888888888776666
Q ss_pred hhcccCCCc----EEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCcc
Q 036593 205 AIFNISTIR----VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFG 280 (574)
Q Consensus 205 ~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 280 (574)
.+..+++|+ .|++++|.+. .++...+ ... +|++|++++|.++...+..+.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~-~~~------------------------~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEI------------------------RLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCC-EECTTSS-CSC------------------------CEEEEECCSSCCSCCCTTTTT
T ss_pred HhhhhhhccccceeeecCCCccc-ccCcccc-CCC------------------------cccEEECCCCceeecCHhHhc
Confidence 666666665 6667666665 2222222 122 455555555555444444445
Q ss_pred CCCcCceEEccCCcccc
Q 036593 281 NLRHLNVLSIRTNNLTT 297 (574)
Q Consensus 281 ~l~~L~~L~l~~~~~~~ 297 (574)
.+++|+.|++++|++..
T Consensus 222 ~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TCCSCCEEECCSSCBCC
T ss_pred ccccccEEEccCCcccc
Confidence 55556666665555543
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-23 Score=210.77 Aligned_cols=219 Identities=19% Similarity=0.182 Sum_probs=116.1
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCC
Q 036593 312 TNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQ 391 (574)
Q Consensus 312 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 391 (574)
..+++|++|++++|.++...+..+..+. +|+.|++++|.+....+ +..+++|++|++++|.+++.. ..++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence 3455788888888877766555554443 55555555555554333 555555555555555554321 225555
Q ss_pred eEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCC
Q 036593 392 GLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLP 471 (574)
Q Consensus 392 ~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 471 (574)
+|++++|.+++ ..+. .+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 103 ~L~L~~N~l~~------------------~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 103 TLHAANNNISR------------------VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp EEECCSSCCCC------------------EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred EEECcCCcCCC------------------CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 55555555543 2221 23455555555555554444455555555555555555555444
Q ss_pred cccc-CCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCC
Q 036593 472 SNVQ-KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALS 550 (574)
Q Consensus 472 ~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 550 (574)
..+. .+++|++|++++|.+.+.. ....+++|+.|++++|.+++. |..+..+++|+.|++++|.+.. +|..+..++
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~ 237 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQ 237 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCT
T ss_pred HHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCC
Confidence 4443 4555555555555555331 122355555555555555532 2235555555555555555552 444455555
Q ss_pred CCCeEeccCCccc
Q 036593 551 HLKQFNVSQNMLE 563 (574)
Q Consensus 551 ~L~~l~l~~n~~~ 563 (574)
+|+.|++++|++.
T Consensus 238 ~L~~L~l~~N~l~ 250 (487)
T 3oja_A 238 NLEHFDLRGNGFH 250 (487)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEcCCCCCc
Confidence 5555555555554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=213.85 Aligned_cols=239 Identities=20% Similarity=0.177 Sum_probs=188.7
Q ss_pred ccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCc
Q 036593 279 FGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPK 358 (574)
Q Consensus 279 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 358 (574)
...+++|+.|++++|.+..... ..+..+++|++|++++|.+++..+ +..+ ++|+.|++++|.+...
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l--- 95 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISA--------ADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQEL--- 95 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCG--------GGGTTCTTCCEEECTTSCCEEEEE--CTTC-TTCCEEECCSSEEEEE---
T ss_pred cccCCCccEEEeeCCcCCCCCH--------HHHhCCCCCCEEEeeCCCCCCCcc--cccC-CCCCEEEecCCcCCCC---
Confidence 3455699999999999887532 348899999999999999986554 4443 4999999999998853
Q ss_pred cccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECC
Q 036593 359 EIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLG 438 (574)
Q Consensus 359 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~ 438 (574)
...++|++|++++|.+++..+. .+++|++|++++|++++ ..+..+..+++|+.|+++
T Consensus 96 --~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~------------------~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 96 --LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM------------------LRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp --EECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS------------------GGGBCGGGGSSEEEEECT
T ss_pred --CCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC------------------CCchhhcCCCCCCEEECC
Confidence 2348999999999999876543 45788888888888775 334566778889999999
Q ss_pred CCeecccCCcccc-CCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccccc
Q 036593 439 SNKLTSSIPSSLW-SLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGP 517 (574)
Q Consensus 439 ~n~~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 517 (574)
+|.+++..+..+. .+++|++|+|++|.+.+..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.++ .
T Consensus 153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~ 228 (487)
T 3oja_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-L 228 (487)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-E
T ss_pred CCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-c
Confidence 9988877776665 68899999999998876633 3458899999999999886544 4788899999999999988 4
Q ss_pred CCccccCCcCCCeeeCCCCccc-ccCCcCcccCCCCCeEecc
Q 036593 518 IPESVGSLISLESLDLSGNNFS-GKIPKSLEALSHLKQFNVS 558 (574)
Q Consensus 518 ~~~~l~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~l~l~ 558 (574)
+|..+..+++|+.|++++|++. ...|..+..++.|+.++++
T Consensus 229 lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 6777888889999999999887 4555667777777777775
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=191.45 Aligned_cols=183 Identities=27% Similarity=0.257 Sum_probs=128.0
Q ss_pred ccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCC
Q 036593 360 IGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGS 439 (574)
Q Consensus 360 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 439 (574)
+..+++|++|++++|.+.+. ..+..+++|++|++++|++++ ..+..+..+++|++|++++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~------------------~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS------------------LPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC------------------CCTTTTTTCTTCCEEECTT
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc------------------cChhHhcCCcCCCEEECCC
Confidence 45667777777777776643 356667777777777776663 2334456677777777777
Q ss_pred CeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCC
Q 036593 440 NKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIP 519 (574)
Q Consensus 440 n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 519 (574)
|++.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 77776666667777777777777777776666666777777777777777776666666777777777777777776666
Q ss_pred ccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCC
Q 036593 520 ESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVK 569 (574)
Q Consensus 520 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~ 569 (574)
..+..+++|+.|++++|++.+ .+++|+.++++.|+++|.+|..
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred HHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence 667777777777777777652 3456777777777777777754
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-22 Score=188.11 Aligned_cols=203 Identities=25% Similarity=0.233 Sum_probs=128.7
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCC
Q 036593 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390 (574)
Q Consensus 311 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 390 (574)
+..++++++++++++.++.+.... ++.++.|+++++.+....+..+..+++|++|++++|.+++.... ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCC----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 566778888888888877553321 23556666666665555555555666666666666655543222 455555
Q ss_pred CeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecC
Q 036593 391 QGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSL 470 (574)
Q Consensus 391 ~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~ 470 (574)
++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+....
T Consensus 80 ~~L~Ls~N~l~-------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 80 GTLDLSHNQLQ-------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp CEEECCSSCCS-------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred CEEECCCCcCC-------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence 55555555554 34455566677777777777776555566666777777777777776665
Q ss_pred CccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 471 PSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 471 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+..|..+++|+.|++++|++....+..|.++++|+.|++++|+++ .+|..+...++|+.|++++|++.
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 566666677777777777776555555666677777777777776 55555555666777777777665
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=181.85 Aligned_cols=187 Identities=25% Similarity=0.271 Sum_probs=166.9
Q ss_pred ccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCC
Q 036593 360 IGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGS 439 (574)
Q Consensus 360 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 439 (574)
...+++|+.++++++.+... ..+..+++|++|++++|++++ + ..+..+++|++|++++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-------------------~-~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-------------------I-SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-------------------C-GGGTTCTTCCEEECTT
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-------------------c-hhhcCCCCCCEEECCC
Confidence 45778899999999988743 357889999999999998873 2 3577899999999999
Q ss_pred CeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCC
Q 036593 440 NKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIP 519 (574)
Q Consensus 440 n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 519 (574)
|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 99997777888999999999999999998888888999999999999999997777778999999999999999997777
Q ss_pred ccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCC
Q 036593 520 ESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 520 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
..+..+++|+.|++++|++....+..+..+++|+.|++++|++.+..|.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 7789999999999999999987777899999999999999999998884
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-24 Score=213.38 Aligned_cols=136 Identities=19% Similarity=0.322 Sum_probs=59.8
Q ss_pred CCCCeEECCCCeeccc-CC---ccccCCCCCCeEeCCCCcceec-----CCccccCCCCCCEEeCCCCccc----ccCcc
Q 036593 430 TSLRELRLGSNKLTSS-IP---SSLWSLEYILEINLSSNSLNDS-----LPSNVQKLKVLRVLDLSRNQLS----GNIPS 496 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~-~~---~~~~~~~~L~~L~L~~~~l~~~-----~~~~~~~l~~L~~L~l~~n~~~----~~~~~ 496 (574)
++|++|++++|+++.. .+ ..+..+++|++|++++|.+... .+..+..+++|++|++++|.+. ..++.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 4444555555444311 11 2333444555555555544321 1223444455555555555542 22333
Q ss_pred cccCCCCCCEeeCCCCccccc----CCccccC--CcCCCeeeCCCCcccc----cCCcCc-ccCCCCCeEeccCCccccc
Q 036593 497 TIGALVDLETLSLASNQFQGP----IPESVGS--LISLESLDLSGNNFSG----KIPKSL-EALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 497 ~~~~~~~L~~L~l~~n~~~~~----~~~~l~~--~~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~l~l~~n~~~~~ 565 (574)
.+..+++|++|+|++|.+++. ++..+.. +++|+.|++++|.++. .+|..+ .++++|+.|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 444455555555555554432 2233322 4455555555555543 233333 3345555555555555443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-21 Score=177.48 Aligned_cols=191 Identities=21% Similarity=0.302 Sum_probs=167.4
Q ss_pred CccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCC
Q 036593 28 MRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIP 107 (574)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 107 (574)
.|..|.|..|. ...++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCN---EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEE---GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcC---CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 46778888884 34568999999998 4666555 699999999999988888889999999999999999998888
Q ss_pred ccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCC
Q 036593 108 TWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQN 187 (574)
Q Consensus 108 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 187 (574)
..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88999999999999999999777777899999999999999998666666789999999999999998777778999999
Q ss_pred CCEEEccCCcccccCchhhcccCCCcEEEcccCcccc
Q 036593 188 LESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224 (574)
Q Consensus 188 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 224 (574)
|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 9999999999987777788889999999999998764
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.6e-21 Score=176.49 Aligned_cols=181 Identities=22% Similarity=0.255 Sum_probs=148.7
Q ss_pred CCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeec
Q 036593 364 RGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLT 443 (574)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 443 (574)
...++++++++.++.. +..+. +.+++|++++|+++ +..+..+..+++|++|++++|.+.
T Consensus 14 ~~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~------------------~~~~~~~~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLA------------------TLSDATFRGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp GGGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCC------------------CCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcC------------------ccCHhHhcCcccCCEEECCCCcCC
Confidence 3456777777776633 22222 45666666666655 355567888999999999999998
Q ss_pred ccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCcccc
Q 036593 444 SSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVG 523 (574)
Q Consensus 444 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 523 (574)
+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..|.++++|++|++++|++.+..+..|.
T Consensus 73 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 152 (251)
T 3m19_A 73 TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152 (251)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC
Confidence 87888888999999999999999887778888999999999999999877777788899999999999999976666889
Q ss_pred CCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccc
Q 036593 524 SLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 524 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~ 565 (574)
.+++|+.|++++|++....+..|..+++|+.|++++|++...
T Consensus 153 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999999999999999977777889999999999999998776
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=177.69 Aligned_cols=197 Identities=23% Similarity=0.260 Sum_probs=131.7
Q ss_pred CCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEE
Q 036593 41 HQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMS 120 (574)
Q Consensus 41 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 120 (574)
...++++++++++++. +|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+.+..+ .+.+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred cCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence 3567777888877773 454443 577888888887776666777788888888888877764433 26777777888
Q ss_pred ccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccc
Q 036593 121 LRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSG 200 (574)
Q Consensus 121 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 200 (574)
+++|.+. .+|..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|+.|++++|++..
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 8777776 566666777777777777777765555667777777777777777766655666667777777777777665
Q ss_pred cCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccc
Q 036593 201 LIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAIN 245 (574)
Q Consensus 201 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 245 (574)
..+..+..+++|++|++++|.+. .+|..++ ..+.|+.+++.+|
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~N 205 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGN 205 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCC
Confidence 55555566666666666666665 4554444 3334444444444
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-21 Score=185.48 Aligned_cols=201 Identities=17% Similarity=0.176 Sum_probs=149.2
Q ss_pred ccceEEeccccccccCCccc--cCCCCCcEEECcCCCCcccCC----cCccccCCCCeEeccCCcccccCCCCCceEEcc
Q 036593 341 SLQSFYAYECKLGGSIPKEI--GNLRGLILLTLDFNDLNGTIP----TSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELN 414 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~ 414 (574)
++++|++++|.+....|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------------ 159 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA------------ 159 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC------------
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch------------
Confidence 45666666666655555555 677777777777777765332 223456777777777777653
Q ss_pred CCeeeecCCccCcCCCCCCeEECCCCeeccc----CCccccCCCCCCeEeCCCCcceecCCc---cccCCCCCCEEeCCC
Q 036593 415 GNKLSGHIPPCLASLTSLRELRLGSNKLTSS----IPSSLWSLEYILEINLSSNSLNDSLPS---NVQKLKVLRVLDLSR 487 (574)
Q Consensus 415 ~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~~~l~~~~~~---~~~~l~~L~~L~l~~ 487 (574)
..+..+..+++|++|++++|++.+. ....+..+++|++|++++|.++..... .+..+++|++|++++
T Consensus 160 ------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 160 ------FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp ------CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred ------hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence 4456778899999999999987532 233446788999999999998643211 346789999999999
Q ss_pred CcccccCcccccCC---CCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcccc
Q 036593 488 NQLSGNIPSTIGAL---VDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 488 n~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~ 564 (574)
|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++... |. +..+++|+.|++++|+++.
T Consensus 234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 99987766666666 69999999999999 6676664 7999999999999853 33 6788999999999999875
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.1e-23 Score=200.42 Aligned_cols=261 Identities=19% Similarity=0.211 Sum_probs=128.6
Q ss_pred ecccccceecCCcCccCCCCccEEeCCCCceeecCC----CCccCCC-cCceEEccCCcccccCCCCccccccccccCC-
Q 036593 241 TLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIP----NTFGNLR-HLNVLSIRTNNLTTESSSADQWSFLSSLTNC- 314 (574)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~- 314 (574)
+++.+.+....+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+...+... +...+...
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----l~~~l~~~~ 79 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE----LVQILAAIP 79 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH----HHHHHHTSC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH----HHHHHhccC
Confidence 445555544444444444446666666666654443 4455555 5666666666655432211 11112222
Q ss_pred CCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCC-CCCcEEECcCCCCcccCCcCcc----c-cC
Q 036593 315 RKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNL-RGLILLTLDFNDLNGTIPTSVG----T-LQ 388 (574)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~----~-~~ 388 (574)
++|++|++++|.+++..+..+... +..+ ++|++|++++|.+++.....+. . .+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~---------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 138 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKT---------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHH---------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCT
T ss_pred CCccEEECcCCcCChHHHHHHHHH---------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCC
Confidence 556666666665554443333221 2233 5666666666666544333322 2 24
Q ss_pred CCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCC-CCCeEECCCCeecccCCc----cccCC-CCCCeEeCC
Q 036593 389 QLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLT-SLRELRLGSNKLTSSIPS----SLWSL-EYILEINLS 462 (574)
Q Consensus 389 ~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~----~~~~~-~~L~~L~L~ 462 (574)
+|++|++++|++++..+. .++..+..++ +|++|++++|++++..+. .+..+ ++|++|+++
T Consensus 139 ~L~~L~Ls~N~l~~~~~~--------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSD--------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp TCCEEECTTSCGGGSCHH--------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred ceeEEEccCCcCCHHHHH--------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 666666666665532110 1122223333 566666666666544332 22233 366666666
Q ss_pred CCcceec----CCccccC-CCCCCEEeCCCCcccccCc----ccccCCCCCCEeeCCCCccccc-------CCccccCCc
Q 036593 463 SNSLNDS----LPSNVQK-LKVLRVLDLSRNQLSGNIP----STIGALVDLETLSLASNQFQGP-------IPESVGSLI 526 (574)
Q Consensus 463 ~~~l~~~----~~~~~~~-l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~-------~~~~l~~~~ 526 (574)
+|.+.+. ++..+.. .++|++|++++|.+.+..+ ..+..+++|++|++++|.+... ++..+..++
T Consensus 205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~ 284 (362)
T 3goz_A 205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284 (362)
T ss_dssp TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred CCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence 6665542 2222322 3466666666666654332 2334456666666666653321 223445556
Q ss_pred CCCeeeCCCCcccc
Q 036593 527 SLESLDLSGNNFSG 540 (574)
Q Consensus 527 ~L~~L~l~~n~~~~ 540 (574)
+|+.|++++|++..
T Consensus 285 ~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 285 KIILVDKNGKEIHP 298 (362)
T ss_dssp EEEEECTTSCBCCG
T ss_pred ceEEEecCCCcCCC
Confidence 66666666666654
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-22 Score=197.93 Aligned_cols=238 Identities=18% Similarity=0.199 Sum_probs=152.6
Q ss_pred CCCCccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCC--CCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcC
Q 036593 25 TTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNL--SFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKL 102 (574)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 102 (574)
.+..+.+|..+.+++ ..+++++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+
T Consensus 32 ~~~vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 32 VSGVCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp TTSSCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE
T ss_pred HHHHHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc
Confidence 346777888877654 45778888887765 2344555 7888888888887665544 45678888888888877
Q ss_pred ccC-CCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccc-cCcc-cCchhccCCCCCCEEEccCC-cCCcC-
Q 036593 103 SGS-IPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFN-VIDG-NIPSGIGNLSNLFDLDLRHN-NLQDQ- 177 (574)
Q Consensus 103 ~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~- 177 (574)
.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++ .++..+.++++|++|++++| .++..
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 654 6667778888888888888776556666677778888888777 4543 24555667777777777777 66543
Q ss_pred CCccccCCC-CCCEEEccCCc--cc-ccCchhhcccCCCcEEEcccCc-ccccCCchhhcCCCCcCeeeccccc-ceecC
Q 036593 178 IPTEIGNLQ-NLESLALGTNN--LS-GLIPPAIFNISTIRVLNLHSNQ-FSGRLPSTIGHSLPNIEYLTLAINN-LIGTI 251 (574)
Q Consensus 178 ~~~~l~~l~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~ 251 (574)
.+..+..++ +|++|++++|. +. ...+..+..+++|++|++++|. +++..+..+. .+++|+.|++++|. +....
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGG
T ss_pred HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHH
Confidence 344456667 77777777773 33 2334455566777777777766 4444444443 45666666666553 21111
Q ss_pred CcCccCCCCccEEeCCCC
Q 036593 252 PDSLTNASKLIGLDLGSN 269 (574)
Q Consensus 252 ~~~~~~~~~L~~L~l~~~ 269 (574)
...+..+++|++|++++|
T Consensus 265 ~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTS
T ss_pred HHHHhcCCCCCEEeccCc
Confidence 123444555555555555
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=173.30 Aligned_cols=203 Identities=17% Similarity=0.154 Sum_probs=148.3
Q ss_pred ccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCc-CccCCCccccCCCCCCEEEccC-CcccccCCcCC
Q 036593 57 TIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK-LSGSIPTWIGVLSKLQIMSLRN-NNITGPIPNSL 134 (574)
Q Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~ 134 (574)
.+|. +. ++|++|++++|.+.+..+..|.++++|++|++++|+ +....+.+|..+++|++|++++ |.+....+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 3555 33 378888888888876666678888888888888886 7766666788888888888887 77775556677
Q ss_pred CCCCCCceeecccccCcccCchhccCCCCCC---EEEccCC-cCCcCCCccccCCCCCC-EEEccCCcccccCchhhccc
Q 036593 135 FNLSKLEMLQASFNVIDGNIPSGIGNLSNLF---DLDLRHN-NLQDQIPTEIGNLQNLE-SLALGTNNLSGLIPPAIFNI 209 (574)
Q Consensus 135 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~l~~~ 209 (574)
.++++|++|++++|.+.+ +|. +..+++|+ +|++++| .+....+..|.++++|+ +|++++|.+....+..+..
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~- 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG- 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-
Confidence 788888888888888763 555 77777777 8888888 77766666788888888 8888888877544444444
Q ss_pred CCCcEEEcccCc-ccccCCchhhcCC-CCcCeeecccccceecCCcCccCCCCccEEeCCCC
Q 036593 210 STIRVLNLHSNQ-FSGRLPSTIGHSL-PNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSN 269 (574)
Q Consensus 210 ~~L~~L~l~~~~-~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 269 (574)
++|++|++++|. +. .++...+..+ ++|+.|++++|.+...... .+++|+.|++.++
T Consensus 179 ~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 778888888884 66 5554444467 7888888888877644332 5667888887765
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-22 Score=195.35 Aligned_cols=267 Identities=17% Similarity=0.200 Sum_probs=163.0
Q ss_pred EEcCCCCCccccCCCccCCCCCcEEEccCCcccccCc----hhhcCCC-CCCEEEccCCcCccCCCccccCC-----CCC
Q 036593 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLP----NELGKLG-RLKFISFSFNKLSGSIPTWIGVL-----SKL 116 (574)
Q Consensus 47 l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L 116 (574)
++++.+.+++.+|..+...++|++|+|++|.+.+..+ ..+..++ +|++|++++|++.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677788887777766666678888888888876655 6778888 88888888888887766666654 888
Q ss_pred CEEEccCCcccccCCcC----CCCC-CCCceeecccccCcccCchhc----cC-CCCCCEEEccCCcCCcCCCcc----c
Q 036593 117 QIMSLRNNNITGPIPNS----LFNL-SKLEMLQASFNVIDGNIPSGI----GN-LSNLFDLDLRHNNLQDQIPTE----I 182 (574)
Q Consensus 117 ~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~~~~~~~~~----l 182 (574)
++|++++|.+.+..+.. +..+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.+....... +
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888888877544443 3333 678888888877765444333 33 357777777777776443332 3
Q ss_pred cCCC-CCCEEEccCCcccccCchhhc----cc-CCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCcc
Q 036593 183 GNLQ-NLESLALGTNNLSGLIPPAIF----NI-STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLT 256 (574)
Q Consensus 183 ~~l~-~L~~L~l~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 256 (574)
..++ +|++|++++|.+....+..+. .+ ++|++|++++|.+.+.....+. ..+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~---------------------~~l~ 221 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA---------------------YIFS 221 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH---------------------HHHH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH---------------------HHHh
Confidence 4444 777777777777655554333 23 4677777777666532211111 1121
Q ss_pred C-CCCccEEeCCCCceeecCC----CCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCC
Q 036593 257 N-ASKLIGLDLGSNSFSGHIP----NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGIL 331 (574)
Q Consensus 257 ~-~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 331 (574)
. .++|++|++++|.+....+ ..+..+++|+.|++++|.+....... ...+...+..+++|+.|++++|++.+..
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~-~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ-CKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH-HHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHH-HHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 2 2345555555555543222 23455666777777776644332110 1113334666777778888888776654
Q ss_pred Chhh
Q 036593 332 PPLI 335 (574)
Q Consensus 332 ~~~~ 335 (574)
+..+
T Consensus 301 ~~~~ 304 (362)
T 3goz_A 301 SIPI 304 (362)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 4433
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=180.79 Aligned_cols=194 Identities=21% Similarity=0.287 Sum_probs=97.1
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCC
Q 036593 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390 (574)
Q Consensus 311 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 390 (574)
...+++|++|+++++.+.... .+..+ ++++.|++++|.+....+ +..+++|++|++++|.+.+. ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~--~~~~l-~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE--GVQYL-NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCccCch--hhhcc-CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence 334566777777776665432 12221 244444444444442222 44445555555555544432 234444445
Q ss_pred CeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecC
Q 036593 391 QGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSL 470 (574)
Q Consensus 391 ~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~ 470 (574)
++|++++|++++ ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..
T Consensus 110 ~~L~l~~n~l~~-------------------~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 110 KTLDLTSTQITD-------------------VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp CEEECTTSCCCC-------------------CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred CEEECCCCCCCC-------------------ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh
Confidence 555444444431 11 14455566666666665543222 455555666666666554432
Q ss_pred CccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 471 PSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 471 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++.+.. .+..+++|+.|++++|++.
T Consensus 168 ~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 168 P--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred h--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 2 5555566666666665553322 455556666666666555332 2455555666666666554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=174.36 Aligned_cols=197 Identities=19% Similarity=0.208 Sum_probs=154.8
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCC-CcccCCcCccccCCCCeEeccC-CcccccCCCCCceEEccCCee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFND-LNGTIPTSVGTLQQLQGLSLED-NNLEGSIPYDLCHLELNGNKL 418 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~l~~~~l 418 (574)
+++.++++++.+....+..+..+++|++|++++|. ++...+..|.++++|++|++++ |+++.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~---------------- 95 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY---------------- 95 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE----------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE----------------
Confidence 55666666666665556677888889999998886 7777777888888888888887 77763
Q ss_pred eecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCC---eEeCCCC-cceecCCccccCCCCCC-EEeCCCCccccc
Q 036593 419 SGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYIL---EINLSSN-SLNDSLPSNVQKLKVLR-VLDLSRNQLSGN 493 (574)
Q Consensus 419 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~---~L~L~~~-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~ 493 (574)
..+..|..+++|++|++++|++++ .+. +..+++|+ +|++++| .+....+..|..+++|+ +|++++|++...
T Consensus 96 --i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 96 --IDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp --ECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred --cCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 334567788999999999998875 444 77888888 9999999 88877777788899999 999999998855
Q ss_pred CcccccCCCCCCEeeCCCCc-ccccCCccccCC-cCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCc
Q 036593 494 IPSTIGALVDLETLSLASNQ-FQGPIPESVGSL-ISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNM 561 (574)
Q Consensus 494 ~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~ 561 (574)
....+.. ++|++|++++|+ ++...+..|..+ ++|+.|++++|++.. +|.. .+++|+.|+++++.
T Consensus 172 ~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 172 QGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 5555655 889999999995 886667788888 899999999999884 3433 57789999988774
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=177.88 Aligned_cols=195 Identities=24% Similarity=0.345 Sum_probs=160.3
Q ss_pred ccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChh
Q 036593 255 LTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPL 334 (574)
Q Consensus 255 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 334 (574)
...+++|++|+++++.+... + .+..+++|+.|++++|.+.... . +..+++|++|++++|.+++.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~---------~-~~~l~~L~~L~L~~n~l~~~---- 100 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLA---------P-LKNLTKITELELSGNPLKNV---- 100 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG---------G-GTTCCSCCEEECCSCCCSCC----
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCCh---------h-HccCCCCCEEEccCCcCCCc----
Confidence 44677899999999988743 3 5788899999999998877642 1 67788888888888876632
Q ss_pred hhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEcc
Q 036593 335 IGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELN 414 (574)
Q Consensus 335 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~ 414 (574)
..+..+++|++|++++|.+++.. .+..+++|++|++++|++++
T Consensus 101 -----------------------~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~------------ 143 (308)
T 1h6u_A 101 -----------------------SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITN------------ 143 (308)
T ss_dssp -----------------------GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCC------------
T ss_pred -----------------------hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCc------------
Confidence 13678899999999999998643 48899999999999998873
Q ss_pred CCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccC
Q 036593 415 GNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNI 494 (574)
Q Consensus 415 ~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 494 (574)
++. +..+++|++|++++|++.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|++.+..
T Consensus 144 -------~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 144 -------ISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp -------CGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred -------Ccc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence 222 6788999999999999975433 8899999999999999976544 789999999999999998654
Q ss_pred cccccCCCCCCEeeCCCCcccc
Q 036593 495 PSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 495 ~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
.+..+++|+.|++++|+++.
T Consensus 212 --~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 212 --PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GGTTCTTCCEEEEEEEEEEC
T ss_pred --cccCCCCCCEEEccCCeeec
Confidence 38899999999999999984
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-21 Score=188.40 Aligned_cols=224 Identities=22% Similarity=0.229 Sum_probs=118.9
Q ss_pred CCcEEEccCCcccccCchhhcCC--CCCCEEEccCCcCccCCCccccCCCCCCEEEccCCccccc-CCcCCCCCCCCcee
Q 036593 67 FLMSLDVTLNNFYGHLPNELGKL--GRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGP-IPNSLFNLSKLEML 143 (574)
Q Consensus 67 ~L~~L~L~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L 143 (574)
.++.++++++.+. +..+..+ +++++|+++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3566666666553 3444544 6666666666666544443 34566666666666655432 44445555666666
Q ss_pred ecccccCcccCchhccCCCCCCEEEccCC-cCCcC-CCccccCCCCCCEEEccCC-ccccc-CchhhcccC-CCcEEEcc
Q 036593 144 QASFNVIDGNIPSGIGNLSNLFDLDLRHN-NLQDQ-IPTEIGNLQNLESLALGTN-NLSGL-IPPAIFNIS-TIRVLNLH 218 (574)
Q Consensus 144 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~ 218 (574)
++++|.+.+..+..++++++|++|++++| .++.. .+..+..+++|++|++++| .+.+. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 66666555444555555566666666555 33321 2333444555555555555 44432 233344444 55555555
Q ss_pred cCcccccCCchhhcCCCCcCeeecccccce-ecCCcCccCCCCccEEeCCCCc-eeecCCCCccCCCcCceEEccCCc-c
Q 036593 219 SNQFSGRLPSTIGHSLPNIEYLTLAINNLI-GTIPDSLTNASKLIGLDLGSNS-FSGHIPNTFGNLRHLNVLSIRTNN-L 295 (574)
Q Consensus 219 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~ 295 (574)
+|.. .+. ...+..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +
T Consensus 204 ~~~~-----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 204 GYRK-----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp SCGG-----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred CCcc-----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 5421 121 1122233455666666666665 444445556666777777777764 2
Q ss_pred cccCCCCccccccccccCCCCCcEEEccCC
Q 036593 296 TTESSSADQWSFLSSLTNCRKLSYLVLDSN 325 (574)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 325 (574)
... ....+..+++|++|++++|
T Consensus 261 ~~~--------~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 261 IPE--------TLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGG--------GGGGGGGCTTCCEEECTTS
T ss_pred CHH--------HHHHHhcCCCCCEEeccCc
Confidence 211 1223566777777777776
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-20 Score=178.17 Aligned_cols=183 Identities=16% Similarity=0.116 Sum_probs=106.3
Q ss_pred CCCcEEEccCCcccccC-ch--hhcCCCCCCEEEccCCcCccCCCccc--cCCCCCCEEEccCCcccccCC----cCCCC
Q 036593 66 SFLMSLDVTLNNFYGHL-PN--ELGKLGRLKFISFSFNKLSGSIPTWI--GVLSKLQIMSLRNNNITGPIP----NSLFN 136 (574)
Q Consensus 66 ~~L~~L~L~~~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~ 136 (574)
..++.+.+.++.+.... .. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45677777776654321 11 12234568888888887777777776 777888888888877764333 22345
Q ss_pred CCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcC----CCccccCCCCCCEEEccCCcccccCc--h-hhccc
Q 036593 137 LSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQ----IPTEIGNLQNLESLALGTNNLSGLIP--P-AIFNI 209 (574)
Q Consensus 137 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~--~-~l~~~ 209 (574)
+++|++|++++|.+.+..+..++++++|++|++++|.+... ....+..+++|++|++++|.+..... . .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 67777777777777655556667777777777777765321 12223556667777777766642211 1 23455
Q ss_pred CCCcEEEcccCcccccCCchhhcC--CCCcCeeecccccce
Q 036593 210 STIRVLNLHSNQFSGRLPSTIGHS--LPNIEYLTLAINNLI 248 (574)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~ 248 (574)
++|++|++++|.+.+..|..+... +++|++|++++|.+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 666666666666654434433311 134444444444444
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.9e-22 Score=195.41 Aligned_cols=249 Identities=16% Similarity=0.183 Sum_probs=124.9
Q ss_pred cCCCccCCCCCcEEEccCCcccccC----chhhcCCCCCCEEEccCCcC---ccCCCccc-------cCCCCCCEEEccC
Q 036593 58 IPPHLGNLSFLMSLDVTLNNFYGHL----PNELGKLGRLKFISFSFNKL---SGSIPTWI-------GVLSKLQIMSLRN 123 (574)
Q Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~---~~~~~~~~-------~~l~~L~~L~l~~ 123 (574)
++..+..+++|++|+|++|.+.... +..+..+++|++|++++|.+ .+..|..+ .++++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 4555666777777777777765442 23356677777777776533 33334333 5667777777777
Q ss_pred Ccccc----cCCcCCCCCCCCceeecccccCcccCchh----ccCC---------CCCCEEEccCCcCCcC-CC---ccc
Q 036593 124 NNITG----PIPNSLFNLSKLEMLQASFNVIDGNIPSG----IGNL---------SNLFDLDLRHNNLQDQ-IP---TEI 182 (574)
Q Consensus 124 ~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l---------~~L~~L~l~~~~~~~~-~~---~~l 182 (574)
|.+.. .++..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.+... .+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 66653 23444555666666666666654222222 2222 5666666666655422 11 234
Q ss_pred cCCCCCCEEEccCCccccc-----CchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccC
Q 036593 183 GNLQNLESLALGTNNLSGL-----IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTN 257 (574)
Q Consensus 183 ~~l~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 257 (574)
..+++|++|++++|.+... .+..+..+++|+.|++++|.++.... ...+..+..
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~---------------------~~l~~~l~~ 242 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS---------------------SALAIALKS 242 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH---------------------HHHHHHGGG
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH---------------------HHHHHHHcc
Confidence 4555666666666555421 12244455555555555555431000 112223334
Q ss_pred CCCccEEeCCCCceeec----CCCCcc--CCCcCceEEccCCcccccCCCCccccccccc-cCCCCCcEEEccCCCCCCC
Q 036593 258 ASKLIGLDLGSNSFSGH----IPNTFG--NLRHLNVLSIRTNNLTTESSSADQWSFLSSL-TNCRKLSYLVLDSNPLGGI 330 (574)
Q Consensus 258 ~~~L~~L~l~~~~~~~~----~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~ 330 (574)
+++|++|++++|.+... .+..+. .+++|+.|++++|.+...+.. .++..+ ..+++|++|++++|++++.
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~----~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR----TLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH----HHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH----HHHHHHHhcCCCceEEEccCCcCCcc
Confidence 44455555555544332 222232 255555555555555431100 012223 3356666666666666554
Q ss_pred C
Q 036593 331 L 331 (574)
Q Consensus 331 ~ 331 (574)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=162.06 Aligned_cols=175 Identities=26% Similarity=0.228 Sum_probs=139.4
Q ss_pred cEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccC
Q 036593 367 ILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSI 446 (574)
Q Consensus 367 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 446 (574)
+.++++++.++... .. -.++|++|++++|+++ +..+..+..+++|++|++++|++.+..
T Consensus 10 ~~v~c~~~~l~~~p-~~--~~~~l~~L~l~~n~l~------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 10 TTVECYSQGRTSVP-TG--IPAQTTYLDLETNSLK------------------SLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp TEEECCSSCCSSCC-SC--CCTTCSEEECCSSCCC------------------CCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CEEEecCCCccCCC-CC--CCCCCcEEEcCCCccC------------------cCChhhhcccccCcEEECCCCccCccC
Confidence 46666666655332 11 1346666666666655 244456788899999999999998666
Q ss_pred CccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCc
Q 036593 447 PSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLI 526 (574)
Q Consensus 447 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 526 (574)
+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..++
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 67788899999999999999877777788899999999999999877777788899999999999999876666788899
Q ss_pred CCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCCC
Q 036593 527 SLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVK 569 (574)
Q Consensus 527 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~ 569 (574)
+|+.|++++|++.. .+++|+.|+++.|+++|.+|..
T Consensus 149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeecc
Confidence 99999999998763 4678999999999999999864
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=157.09 Aligned_cols=175 Identities=24% Similarity=0.226 Sum_probs=142.9
Q ss_pred CCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCee
Q 036593 363 LRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKL 442 (574)
Q Consensus 363 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 442 (574)
.+++++|++++|.+++.....+..+++|++|++++|++++ ..+..+..+++|++|++++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS------------------LPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC------------------CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc------------------cChhhcCCCCCcCEEECCCCcC
Confidence 4588999999999887777778889999999999888773 2334567889999999999999
Q ss_pred cccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccc
Q 036593 443 TSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV 522 (574)
Q Consensus 443 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 522 (574)
.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------ 162 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------ 162 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------
Confidence 86666778889999999999999987777778889999999999999987766678889999999999998763
Q ss_pred cCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcccccc
Q 036593 523 GSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEI 566 (574)
Q Consensus 523 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~ 566 (574)
.+++|+.|+++.|++++.+|..++.++. ++..|...+..
T Consensus 163 -~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~ 201 (208)
T 2o6s_A 163 -TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKP 201 (208)
T ss_dssp -CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCB
T ss_pred -CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCc
Confidence 4568899999999999888888887765 55556554443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=155.55 Aligned_cols=133 Identities=23% Similarity=0.321 Sum_probs=77.3
Q ss_pred CCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeC
Q 036593 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSL 509 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 509 (574)
++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..|.++++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45556666666555444445555556666666666655555555555666666666666655444444555566666666
Q ss_pred CCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcc
Q 036593 510 ASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNML 562 (574)
Q Consensus 510 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~ 562 (574)
++|++.+..+..|..+++|+.|++++|.+....+..|..+++|+.|++++|++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 66666555555555566666666666666554444555566666666666655
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=167.45 Aligned_cols=238 Identities=20% Similarity=0.137 Sum_probs=155.0
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccC-CCccccCCCCCCE-EEccC
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGS-IPTWIGVLSKLQI-MSLRN 123 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~-L~l~~ 123 (574)
++++++++++ .+|..+ .+++++|+|++|.+...-+.+|+++++|++|+|++|++.+. .+.+|.+++++++ +.+.+
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 5677778887 466655 36899999999998765566789999999999999987654 4457888888776 45556
Q ss_pred CcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccC-CcCCcCCCccccCCC-CCCEEEccCCccccc
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRH-NNLQDQIPTEIGNLQ-NLESLALGTNNLSGL 201 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 201 (574)
|.+....+..|..+++|++|++++|.+....+..+....++..+++.+ +.+.......|..+. .++.|++++|.+...
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 778766677888888999999988888755555566667777888755 456555555666653 577788888877754
Q ss_pred CchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccC
Q 036593 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGN 281 (574)
Q Consensus 202 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 281 (574)
.+..+ ...+|+++++.++.....+|...+..+++|+.|++++|.++...... +.+|+.|.+.++.--...| .+..
T Consensus 170 ~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~ 244 (350)
T 4ay9_X 170 HNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEK 244 (350)
T ss_dssp CTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTT
T ss_pred Chhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cchh
Confidence 44333 44567777776543333666555556666666666666655433322 2334444433332222233 2445
Q ss_pred CCcCceEEcc
Q 036593 282 LRHLNVLSIR 291 (574)
Q Consensus 282 l~~L~~L~l~ 291 (574)
+++|+.+++.
T Consensus 245 l~~L~~l~l~ 254 (350)
T 4ay9_X 245 LVALMEASLT 254 (350)
T ss_dssp CCSCCEEECS
T ss_pred CcChhhCcCC
Confidence 5555555554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-18 Score=154.32 Aligned_cols=136 Identities=24% Similarity=0.253 Sum_probs=94.1
Q ss_pred CCCeEECCCCeecccCC-ccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeC
Q 036593 431 SLRELRLGSNKLTSSIP-SSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSL 509 (574)
Q Consensus 431 ~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 509 (574)
.+++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|.++++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 45677777777765533 44666777777777777776666666777777777777777776666666777777777777
Q ss_pred CCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcccccc
Q 036593 510 ASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEI 566 (574)
Q Consensus 510 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~ 566 (574)
++|++.+..+..|..+++|+.|++++|.+....|..|..+++|+.|++++|++....
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 777777666667777777777777777777666667777777777777777766443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-18 Score=165.82 Aligned_cols=238 Identities=18% Similarity=0.134 Sum_probs=177.3
Q ss_pred cEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCC-cCCCCCCCCce-eecc
Q 036593 69 MSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIP-NSLFNLSKLEM-LQAS 146 (574)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~ 146 (574)
++++.+++.++ .+|..+ .+++++|+|++|+++.+.+.+|+++++|++|++++|.+.+.++ .+|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67888888875 567655 3689999999999997777789999999999999999865444 56788888776 5556
Q ss_pred cccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccC-CcccccCchhhcccC-CCcEEEcccCcccc
Q 036593 147 FNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGT-NNLSGLIPPAIFNIS-TIRVLNLHSNQFSG 224 (574)
Q Consensus 147 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~ 224 (574)
.+.+....+..|.++++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 6788867778899999999999999998876666666777788888865 456655556666654 6888999999888
Q ss_pred cCCchhhcCCCCcCeeeccc-ccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCc-ccccCCCC
Q 036593 225 RLPSTIGHSLPNIEYLTLAI-NNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNN-LTTESSSA 302 (574)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~ 302 (574)
.++...+ ...+|+.+.+.+ +.+.......|..+++|++|++++|.++...+..+. +|+.|.+.++. +...
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~l---- 239 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKL---- 239 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCC----
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcC----
Confidence 6666655 456888888875 556655566788889999999999988855444444 45555544432 3222
Q ss_pred ccccccccccCCCCCcEEEccC
Q 036593 303 DQWSFLSSLTNCRKLSYLVLDS 324 (574)
Q Consensus 303 ~~~~~~~~l~~~~~L~~L~l~~ 324 (574)
..+..+++|+.+++++
T Consensus 240 ------P~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 240 ------PTLEKLVALMEASLTY 255 (350)
T ss_dssp ------CCTTTCCSCCEEECSC
T ss_pred ------CCchhCcChhhCcCCC
Confidence 2366778888888764
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-18 Score=162.57 Aligned_cols=168 Identities=25% Similarity=0.380 Sum_probs=98.4
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG 420 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~ 420 (574)
+++.+++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|++++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~------------------ 104 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD------------------ 104 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC------------------
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC------------------
Confidence 556666666655432 2 24555666666666665554332 5555566666665555542
Q ss_pred cCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccC
Q 036593 421 HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA 500 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 500 (574)
+ ..+..+++|++|++++|++.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..
T Consensus 105 -~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~ 176 (291)
T 1h6t_A 105 -L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 176 (291)
T ss_dssp -G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred -C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcC
Confidence 1 1255666667777776666532 3455666666666666666544 445666666666666666664333 566
Q ss_pred CCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 501 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 501 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
+++|++|++++|.+++. + .+..+++|+.|++++|++..
T Consensus 177 l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 66666666666666632 2 35666666666666666653
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-18 Score=153.61 Aligned_cols=136 Identities=28% Similarity=0.310 Sum_probs=95.2
Q ss_pred CCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeC
Q 036593 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSL 509 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 509 (574)
++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 66777777777777666666777777777777777776555556667777777777777777555556667777777777
Q ss_pred CCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcccccc
Q 036593 510 ASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEI 566 (574)
Q Consensus 510 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~ 566 (574)
++|++. .+|..+..+++|+.|++++|++....+..|..+++|+.|++++|++....
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 777777 56666677777777777777777555556677777777777777766543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-18 Score=166.98 Aligned_cols=176 Identities=26% Similarity=0.231 Sum_probs=138.1
Q ss_pred cEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCc-CCCCCCeEECCCCeeccc
Q 036593 367 ILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLA-SLTSLRELRLGSNKLTSS 445 (574)
Q Consensus 367 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~ 445 (574)
+.++++++.++.. +..+ .+.++.|++++|+++ +..+..+. .+++|+.|++++|++.+.
T Consensus 21 ~~l~c~~~~l~~i-P~~~--~~~l~~L~Ls~N~l~------------------~l~~~~~~~~l~~L~~L~L~~N~i~~i 79 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSL--PSYTALLDLSHNNLS------------------RLRAEWTPTRLTNLHSLLLSHNHLNFI 79 (361)
T ss_dssp TEEECCSSCCSSC-CSSC--CTTCSEEECCSSCCC------------------EECTTSSSSCCTTCCEEECCSSCCCEE
T ss_pred CEEEeCCCCcCcc-CccC--CCCCCEEECCCCCCC------------------ccChhhhhhcccccCEEECCCCcCCcc
Confidence 5677777766643 2222 234566666666555 34555666 889999999999999877
Q ss_pred CCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccc---
Q 036593 446 IPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV--- 522 (574)
Q Consensus 446 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l--- 522 (574)
.+.+|..+++|++|+|++|.+....+..|..+++|++|++++|.+....+..|.++++|+.|+|++|+++...+..|
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~ 159 (361)
T 2xot_A 80 SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--
T ss_pred ChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc
Confidence 77889999999999999999988877788999999999999999987778889999999999999999986544455
Q ss_pred cCCcCCCeeeCCCCcccccCCcCcccCCC--CCeEeccCCccc
Q 036593 523 GSLISLESLDLSGNNFSGKIPKSLEALSH--LKQFNVSQNMLE 563 (574)
Q Consensus 523 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~l~l~~n~~~ 563 (574)
..+++|+.|++++|++....+..+..++. ++.|++++|++.
T Consensus 160 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp --CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 56889999999999998665567888887 488999999875
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=150.60 Aligned_cols=163 Identities=20% Similarity=0.200 Sum_probs=135.5
Q ss_pred cccCCCCccceeeeeecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCc
Q 036593 22 LLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK 101 (574)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 101 (574)
.|..+...|.|.++.|. ++++. .+|..+. ++|++|+|++|.+.+..+..|..+++|++|++++|+
T Consensus 11 ~~~~~~~~Cs~~~v~c~------------~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCR------------SKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp CCCCTTCEEETTEEECT------------TSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEeCCEeEcc------------CCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence 35666777887776664 34454 4555443 799999999999988888899999999999999999
Q ss_pred CccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCcc
Q 036593 102 LSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTE 181 (574)
Q Consensus 102 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 181 (574)
+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+....+..
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 98777788899999999999999998666666888999999999999988 67888889999999999999888776677
Q ss_pred ccCCCCCCEEEccCCcccc
Q 036593 182 IGNLQNLESLALGTNNLSG 200 (574)
Q Consensus 182 l~~l~~L~~L~l~~~~~~~ 200 (574)
+..+++|+.|++++|++..
T Consensus 155 ~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTCTTCCEEECTTSCBCT
T ss_pred HhCCCCCCEEEeeCCCccC
Confidence 8888889999988888763
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=152.15 Aligned_cols=155 Identities=17% Similarity=0.280 Sum_probs=130.1
Q ss_pred ccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCC
Q 036593 384 VGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463 (574)
Q Consensus 384 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 463 (574)
...+++|++|++++|+++ .++ .+..+++|++|++++|.+. ....+..+++|++|++++
T Consensus 40 ~~~l~~L~~L~l~~n~i~-------------------~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~ 97 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-------------------DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMG 97 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-------------------CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEEC
T ss_pred hhhcCCccEEeccCCCcc-------------------ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeEC
Confidence 356778888888888776 344 4778899999999999764 345788899999999999
Q ss_pred CcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCc-ccccCCccccCCcCCCeeeCCCCcccccC
Q 036593 464 NSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQ-FQGPIPESVGSLISLESLDLSGNNFSGKI 542 (574)
Q Consensus 464 ~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 542 (574)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. ++ ..+ .+..+++|+.|++++|++...
T Consensus 98 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~- 174 (197)
T 4ezg_A 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY- 174 (197)
T ss_dssp TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-
T ss_pred CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-
Confidence 99988778889999999999999999997778889999999999999998 66 444 689999999999999999853
Q ss_pred CcCcccCCCCCeEeccCCcccc
Q 036593 543 PKSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 543 ~~~l~~l~~L~~l~l~~n~~~~ 564 (574)
+ .+..+++|+.|++++|+|.+
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp T-TGGGCSSCCEEEECBC----
T ss_pred H-HhccCCCCCEEEeeCcccCC
Confidence 3 78899999999999999865
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=168.74 Aligned_cols=107 Identities=26% Similarity=0.345 Sum_probs=52.3
Q ss_pred CCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCC----
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDL---- 504 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L---- 504 (574)
+++|+.|++++|.+++ ++. .+++|++|++++|.+.+ +|. +. ++|+.|++++|.++ .++. +.. +|
T Consensus 139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~ 206 (571)
T 3cvr_A 139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSE 206 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------
T ss_pred CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhccc
Confidence 4555555555555543 222 34555555555555544 232 33 55555555555555 2222 322 44
Q ss_pred ---CEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCccc
Q 036593 505 ---ETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEA 548 (574)
Q Consensus 505 ---~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~ 548 (574)
+.|++++|.++ .+|..+..+++|+.|++++|++....|..|..
T Consensus 207 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred ccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 55555555555 34444444555555555555555544444443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-17 Score=148.09 Aligned_cols=152 Identities=24% Similarity=0.270 Sum_probs=125.9
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 124 (574)
+.+++++++++. +|..+. +++++|++++|.+.+..+..|..+++|++|++++|++.+..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 367888888874 565554 68999999999998777778999999999999999999888889999999999999999
Q ss_pred cccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCccc
Q 036593 125 NITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLS 199 (574)
Q Consensus 125 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 199 (574)
.+....+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 988555556788888888888888888777777888888888888888888776777788888888888887764
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-16 Score=155.60 Aligned_cols=102 Identities=11% Similarity=0.144 Sum_probs=45.5
Q ss_pred cccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCC
Q 036593 449 SLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISL 528 (574)
Q Consensus 449 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 528 (574)
+|..+.+|+.+.+..+ +......+|..|++|+.++|..+ ++.+...+|.+|++|+.+.+..+ ++.....+|.+|++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3444444444444332 22333344445555555555422 33334445555555555555444 333444455555555
Q ss_pred CeeeCCCCcccccCCcCcccCCCCCeE
Q 036593 529 ESLDLSGNNFSGKIPKSLEALSHLKQF 555 (574)
Q Consensus 529 ~~L~l~~n~~~~~~~~~l~~l~~L~~l 555 (574)
+.+++..+ +. ....+|.++++|+.+
T Consensus 369 ~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEECCC-CE-EhhheecCCCCCcEE
Confidence 55555433 11 112344444544443
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-16 Score=156.42 Aligned_cols=335 Identities=10% Similarity=0.026 Sum_probs=202.6
Q ss_pred ccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchh
Q 036593 126 ITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPA 205 (574)
Q Consensus 126 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 205 (574)
++.+...+|.++.+|+.+.+..+ ++.....+|.+|++|+.+++..+ +......+|.++++|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 45566777888888888888643 55455677888888888888764 55566677888888887766543 33344455
Q ss_pred hcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcC
Q 036593 206 IFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHL 285 (574)
Q Consensus 206 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 285 (574)
|..+..++........ .+....+..+++|+.+.+..+ .......+|..+++|+.+.+..+ ++......|.++..|
T Consensus 136 F~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eecccccccccCcccc---ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 5554433222221111 222223335555555555432 22233444555555555555443 222334445555555
Q ss_pred ceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCC
Q 036593 286 NVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRG 365 (574)
Q Consensus 286 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~ 365 (574)
+.+.+..+..... .....+..|+.+.+ ... ........+..+..
T Consensus 211 ~~i~~~~~~~~i~----------~~~~~~~~l~~i~i-------------------------p~~-~~~i~~~~f~~~~~ 254 (394)
T 4fs7_A 211 ENMEFPNSLYYLG----------DFALSKTGVKNIII-------------------------PDS-FTELGKSVFYGCTD 254 (394)
T ss_dssp CBCCCCTTCCEEC----------TTTTTTCCCCEEEE-------------------------CTT-CCEECSSTTTTCSS
T ss_pred ceeecCCCceEee----------hhhcccCCCceEEE-------------------------CCC-ceeccccccccccc
Confidence 5544433221110 00112233333333 221 11123345677788
Q ss_pred CcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeeccc
Q 036593 366 LILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS 445 (574)
Q Consensus 366 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 445 (574)
++.+.+..+.. .....+|..++.++.+......+ ....|..+.+|+.+.+..+ +...
T Consensus 255 l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---------------------~~~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 255 LESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---------------------PEKTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp CCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---------------------CTTTTTTCTTCCEEEECTT-CCEE
T ss_pred ceeEEcCCCcc-eeeccccccccccceeccCceee---------------------ccccccccccccccccccc-ccee
Confidence 88888776533 35566677777777776654332 2246778889999988765 5545
Q ss_pred CCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCC
Q 036593 446 IPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL 525 (574)
Q Consensus 446 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~ 525 (574)
...+|..|.+|+.+++..+ +......+|.+|++|+.+++..+ +..+...+|.+|++|+.+++..+ +. ....+|..+
T Consensus 312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c 387 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDT 387 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTT
T ss_pred chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCC
Confidence 6778888999999999754 55666778889999999999766 66677788999999999998755 22 234678888
Q ss_pred cCCCee
Q 036593 526 ISLESL 531 (574)
Q Consensus 526 ~~L~~L 531 (574)
++|+.+
T Consensus 388 ~~L~~I 393 (394)
T 4fs7_A 388 TKFKWI 393 (394)
T ss_dssp CEEEEE
T ss_pred CCCcEE
Confidence 888765
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=157.47 Aligned_cols=173 Identities=27% Similarity=0.402 Sum_probs=130.4
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCC
Q 036593 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390 (574)
Q Consensus 311 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 390 (574)
+..+++|+.|+++++.+..... +..+ ++++.|++++|.+....+ +..+++|++|++++|.+++. ..+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG--IQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTC
T ss_pred hhhcCcccEEEccCCCcccChh--HhcC-CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCC
Confidence 4567788888888888776532 3333 488888888888875433 77888888888888887753 347778888
Q ss_pred CeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecC
Q 036593 391 QGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSL 470 (574)
Q Consensus 391 ~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~ 470 (574)
++|++++|++++ + ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+.+..
T Consensus 115 ~~L~L~~n~i~~-------------------~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 115 KSLSLEHNGISD-------------------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp CEEECTTSCCCC-------------------C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CEEECCCCcCCC-------------------C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 888888887763 1 2466778888888888888744 56778888888888888887654
Q ss_pred CccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccc
Q 036593 471 PSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 471 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
+ +..+++|+.|++++|.+.+. + .+..+++|+.|++++|++..
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred h--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 4 77888888888888888753 2 47788888888888888875
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=169.11 Aligned_cols=206 Identities=24% Similarity=0.330 Sum_probs=154.4
Q ss_pred HhcccccCCCCcc-----ceeee-eecCCCCcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCC
Q 036593 18 MLLYLLKTTNMRL-----SWVGI-SCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGR 91 (574)
Q Consensus 18 ~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 91 (574)
..+..|.....+| .|.++ .|.. .++++|+++++.+++ +|..+ +++|++|+|++|.+. .+| ..+++
T Consensus 31 ~~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~ 101 (571)
T 3cvr_A 31 SAWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPAS 101 (571)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTT
T ss_pred HHHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCC
Confidence 3455677666666 68887 6753 579999999999986 66655 378999999999987 566 56799
Q ss_pred CCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccC
Q 036593 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRH 171 (574)
Q Consensus 92 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 171 (574)
|++|++++|++++ +|. +.. +|++|++++|.+.+ +|. .+++|++|++++|.+++ +|. .+++|++|++++
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence 9999999999986 666 655 99999999999884 555 67899999999999874 554 578899999999
Q ss_pred CcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCC-------cEEEcccCcccccCCchhhcCCCCcCeeeccc
Q 036593 172 NNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTI-------RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAI 244 (574)
Q Consensus 172 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 244 (574)
|.++. .+. +. ++|+.|++++|.+. .+|. +.. +| +.|++++|.+. .+|..++ .+++|+.|++++
T Consensus 170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~~ 239 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILED 239 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECCS
T ss_pred CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEeeC
Confidence 98876 444 55 88899999988887 4444 443 55 77888887777 6676666 377777777777
Q ss_pred ccceecCCcC
Q 036593 245 NNLIGTIPDS 254 (574)
Q Consensus 245 ~~~~~~~~~~ 254 (574)
|.+....+..
T Consensus 240 N~l~~~~p~~ 249 (571)
T 3cvr_A 240 NPLSSRIRES 249 (571)
T ss_dssp SSCCHHHHHH
T ss_pred CcCCCcCHHH
Confidence 7665544433
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-17 Score=169.35 Aligned_cols=169 Identities=25% Similarity=0.394 Sum_probs=129.1
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG 420 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~ 420 (574)
.|+.|.+.+|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|++|+|++|++++
T Consensus 44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~------------------ 101 (605)
T 1m9s_A 44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD------------------ 101 (605)
T ss_dssp TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC------------------
T ss_pred CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC------------------
Confidence 67777777777663 23 46777788888888777765443 6777777777777777662
Q ss_pred cCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccC
Q 036593 421 HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA 500 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 500 (574)
++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..+ +..
T Consensus 102 -l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~ 173 (605)
T 1m9s_A 102 -LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 173 (605)
T ss_dssp -CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred -Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc
Confidence 22 567788899999999988742 4577888899999999888765 567888899999999988886544 788
Q ss_pred CCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccccc
Q 036593 501 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGK 541 (574)
Q Consensus 501 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 541 (574)
+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++...
T Consensus 174 l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 88999999999988853 4578888899999999888754
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=144.59 Aligned_cols=151 Identities=23% Similarity=0.230 Sum_probs=118.9
Q ss_pred EEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCc-hhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 036593 46 ALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLP-NELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 46 ~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 124 (574)
+++++++.++. +|..+. +.+++|++++|.+.+..+ ..|..+++|++|++++|++.+..+.+|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 78888888874 565553 467899999998876644 45888899999999999888777778888888888888888
Q ss_pred cccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCccc
Q 036593 125 NITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLS 199 (574)
Q Consensus 125 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 199 (574)
.+....+..|..+++|++|++++|.+.+..|..+.++++|++|++++|.+....+..|..+++|++|++++|++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 888666666778888888888888887666777777888888888888777766777777777777777777665
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.2e-17 Score=158.53 Aligned_cols=176 Identities=23% Similarity=0.202 Sum_probs=147.6
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhc-CCCCCCEEEccCCcCccCCCccccCCCCCCEEEccC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELG-KLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRN 123 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 123 (574)
+++++++++++. +|..+. +.+++|+|++|.+.+..+..|. .+++|++|++++|++.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 378999998884 666554 4689999999999877777787 899999999999999988888999999999999999
Q ss_pred CcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccc---cCCCCCCEEEccCCcccc
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEI---GNLQNLESLALGTNNLSG 200 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~ 200 (574)
|.+....+..|..+++|++|++++|.+....+..|.++++|++|++++|.+.......+ ..+++|+.|++++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99987777778999999999999999987778889999999999999999886655555 568899999999998887
Q ss_pred cCchhhcccCC--CcEEEcccCccc
Q 036593 201 LIPPAIFNIST--IRVLNLHSNQFS 223 (574)
Q Consensus 201 ~~~~~l~~~~~--L~~L~l~~~~~~ 223 (574)
..+..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 66667777766 477888888765
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=155.35 Aligned_cols=168 Identities=23% Similarity=0.328 Sum_probs=119.3
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSG 420 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~ 420 (574)
++..+.+.++.+.... .+..+++|+.|++++|.++... .+..+++|++|++++|++++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~------------------ 77 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISD------------------ 77 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC------------------
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCC------------------
Confidence 4555566666665332 3567778888888888776432 56777778888877777762
Q ss_pred cCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccC
Q 036593 421 HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA 500 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 500 (574)
++. +..+++|++|++++|++.+. +.. .. ++|++|++++|.+.+. ..+..+++|+.|++++|++.+. ..+..
T Consensus 78 -~~~-l~~l~~L~~L~L~~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~ 148 (263)
T 1xeu_A 78 -LSP-LKDLTKLEELSVNRNRLKNL-NGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGF 148 (263)
T ss_dssp -CGG-GTTCSSCCEEECCSSCCSCC-TTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGG
T ss_pred -Chh-hccCCCCCEEECCCCccCCc-Ccc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHcc
Confidence 223 67788888888888888643 222 22 7888888888888654 3477788888888888888754 25777
Q ss_pred CCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccccc
Q 036593 501 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGK 541 (574)
Q Consensus 501 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 541 (574)
+++|++|++++|++.+. ..+..+++|+.|++++|++...
T Consensus 149 l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 149 LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 88888888888888755 5677788888888888887743
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-17 Score=145.70 Aligned_cols=154 Identities=18% Similarity=0.304 Sum_probs=122.9
Q ss_pred cCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCC
Q 036593 361 GNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSN 440 (574)
Q Consensus 361 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 440 (574)
..+++|++|++++|.+... + .+..+++|++|++++|.++ .. ..+..+++|++|++++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~-------------------~~-~~l~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHAT-------------------NY-NPISGLSNLERLRIMGK 98 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCS-------------------CC-GGGTTCTTCCEEEEECT
T ss_pred hhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCC-------------------cc-hhhhcCCCCCEEEeECC
Confidence 5677888899988888743 3 5788888999988888665 22 35677889999999999
Q ss_pred eecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCc-ccccCcccccCCCCCCEeeCCCCcccccCC
Q 036593 441 KLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQ-LSGNIPSTIGALVDLETLSLASNQFQGPIP 519 (574)
Q Consensus 441 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 519 (574)
++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +.. .+ .+.++++|++|++++|.+.+ .+
T Consensus 99 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~ 175 (197)
T 4ezg_A 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR 175 (197)
T ss_dssp TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT
T ss_pred ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH
Confidence 9887677888889999999999999887777778889999999999998 653 33 68889999999999999885 33
Q ss_pred ccccCCcCCCeeeCCCCcccc
Q 036593 520 ESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 520 ~~l~~~~~L~~L~l~~n~~~~ 540 (574)
.+..+++|+.|++++|++..
T Consensus 176 -~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -TGGGCSSCCEEEECBC----
T ss_pred -HhccCCCCCEEEeeCcccCC
Confidence 77888999999999998763
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=165.44 Aligned_cols=186 Identities=26% Similarity=0.368 Sum_probs=149.0
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCC
Q 036593 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQL 390 (574)
Q Consensus 311 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 390 (574)
+..++.|+.|+++++.+.... .+..+ ++|+.|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGC-TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccC-CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCC
Confidence 556788999999999887764 24443 499999999999886444 88999999999999998753 368889999
Q ss_pred CeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecC
Q 036593 391 QGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSL 470 (574)
Q Consensus 391 ~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~ 470 (574)
++|++++|++.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..
T Consensus 112 ~~L~Ls~N~l~~-------------------l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 112 KSLSLEHNGISD-------------------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp CEEECTTSCCCC-------------------C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CEEEecCCCCCC-------------------C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 999999998873 2 2467889999999999999754 67888999999999999998765
Q ss_pred CccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCC
Q 036593 471 PSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLE 529 (574)
Q Consensus 471 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 529 (574)
+ +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.......+..+..+.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~ 224 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEEC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEecc
Confidence 5 88899999999999999854 4588899999999999999864333344433333
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-17 Score=158.21 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=63.2
Q ss_pred CCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCC-EeeCCCCcccccCCccccCCcCCCee
Q 036593 453 LEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLE-TLSLASNQFQGPIPESVGSLISLESL 531 (574)
Q Consensus 453 ~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~l~~~~~L~~L 531 (574)
+++|+++++++|.+......+|..|++|+++++.+| +..+...+|.+|++|+ .+++.+ .++...+.+|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 456666666666555555556666666666666655 5445555666666666 666666 5554555666666666666
Q ss_pred eCCCCcccccCCcCcccCCCCCeEe
Q 036593 532 DLSGNNFSGKIPKSLEALSHLKQFN 556 (574)
Q Consensus 532 ~l~~n~~~~~~~~~l~~l~~L~~l~ 556 (574)
++++|.+..+.+..|..+++|++|+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 6666666655556666666666665
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-15 Score=148.72 Aligned_cols=263 Identities=11% Similarity=0.134 Sum_probs=128.9
Q ss_pred CCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCC
Q 036593 235 PNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNC 314 (574)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 314 (574)
..++.+.+.. .+......+|..+ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+..++... |.+|
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a--------F~~c 179 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDI--------FYYC 179 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSST--------TTTC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHH--------hhCc
Confidence 3444444432 2333344445543 4666665544 444455555553 466666654 333333222 5666
Q ss_pred CCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEe
Q 036593 315 RKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLS 394 (574)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 394 (574)
++|+.+++.++.++.+.... |. +.+|+.+.+..+ +......+|.+|++|+.+.
T Consensus 180 ~~L~~l~l~~n~l~~I~~~a-------------------------F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPAST-------------------------FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp TTCCEEECTTSCCSEECTTT-------------------------TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred ccCCeeecCCCcceEechhh-------------------------Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 66666666655554332222 22 244444544422 3334444555555555555
Q ss_pred ccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcce-----ec
Q 036593 395 LEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN-----DS 469 (574)
Q Consensus 395 l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~~ 469 (574)
+..+ ++ .....+|.+ .+|+.+.+. +.++.....+|..|++|+.+.+.++.+. ..
T Consensus 233 l~~~-l~------------------~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 233 IPEN-VS------------------TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp CCTT-CC------------------EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred cCCC-cc------------------Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence 4432 11 022233333 345555552 2233334445555555555555444332 33
Q ss_pred CCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccC
Q 036593 470 LPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEAL 549 (574)
Q Consensus 470 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l 549 (574)
...+|.+|++|+.+++.. .+..+...+|.+|++|+.+.|..+ ++.....+|.++ +|+.+++.+|.........|..+
T Consensus 292 ~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred CHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 445556666666666652 344445556666666666666443 444455566666 66666666665554444555555
Q ss_pred C-CCCeEeccCCc
Q 036593 550 S-HLKQFNVSQNM 561 (574)
Q Consensus 550 ~-~L~~l~l~~n~ 561 (574)
+ +++.|++..+.
T Consensus 369 ~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 369 PDDITVIRVPAES 381 (401)
T ss_dssp CTTCCEEEECGGG
T ss_pred CCCccEEEeCHHH
Confidence 3 55666655443
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-17 Score=159.12 Aligned_cols=286 Identities=14% Similarity=0.083 Sum_probs=184.7
Q ss_pred CCCCCcEEEccCCcccccCchhhcC-CCCCCEEEccCCcCc--cCCCccccCCCCCCEEEccCCcccccCCcCCCC----
Q 036593 64 NLSFLMSLDVTLNNFYGHLPNELGK-LGRLKFISFSFNKLS--GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFN---- 136 (574)
Q Consensus 64 ~~~~L~~L~L~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---- 136 (574)
.++++++|.++++-. ......+.. +++|++|||++|++. ...... ++.++.+.+..+. +.+.+|.+
T Consensus 23 ~~~~l~~L~l~g~i~-~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I~~~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTGKLN-AEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---VPAYAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEEEEC-HHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---ECTTTTEEEETT
T ss_pred hhCceeEEEEecccc-HHHHHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccc---cCHHHhcccccc
Confidence 356788888886422 122223444 788999999988876 222222 2234555555553 34556777
Q ss_pred ----CCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCc----ccccCchhhcc
Q 036593 137 ----LSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNN----LSGLIPPAIFN 208 (574)
Q Consensus 137 ----l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~----~~~~~~~~l~~ 208 (574)
+++|+.|++.. .+......+|.+|++|++|++..+.+....+.+|.++.++..+...... .......+|..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 88888888888 6766666778888889999988888877778888887777777665532 12233445666
Q ss_pred cCCCc-EEEcccCcccccCCchhhc---CCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCc
Q 036593 209 ISTIR-VLNLHSNQFSGRLPSTIGH---SLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRH 284 (574)
Q Consensus 209 ~~~L~-~L~l~~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 284 (574)
+..|+ .+.+.... .++..++. ...+++.+.+.+.-...........+++|+++++.+|.++......|.++++
T Consensus 175 ~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 175 GEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp SCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred ccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 66666 44443322 22222221 1334455544432111110011113678888888888887777778888888
Q ss_pred CceEEccCCcccccCCCCccccccccccCCCCCc-EEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCC
Q 036593 285 LNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLS-YLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNL 363 (574)
Q Consensus 285 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l 363 (574)
|+.+++..+ +..++... |.+|++|+ .+++.+ .++ ...+.+|.+|
T Consensus 252 L~~l~l~~n-i~~I~~~a--------F~~~~~L~~~l~l~~-~l~-------------------------~I~~~aF~~c 296 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRV--------FSNCGRLAGTLELPA-SVT-------------------------AIEFGAFMGC 296 (329)
T ss_dssp CCEEECCTT-CCEECTTT--------TTTCTTCCEEEEECT-TCC-------------------------EECTTTTTTC
T ss_pred CCEEECCcc-cceehHHH--------hhCChhccEEEEEcc-cce-------------------------EEchhhhhCC
Confidence 888888776 66555444 77788887 888765 333 2344668889
Q ss_pred CCCcEEECcCCCCcccCCcCccccCCCCeEec
Q 036593 364 RGLILLTLDFNDLNGTIPTSVGTLQQLQGLSL 395 (574)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 395 (574)
++|+.++++.+.+......+|.++++|++++.
T Consensus 297 ~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 297 DNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999888888888889999999998864
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-15 Score=145.94 Aligned_cols=250 Identities=13% Similarity=0.073 Sum_probs=169.0
Q ss_pred cCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCce
Q 036593 63 GNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEM 142 (574)
Q Consensus 63 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 142 (574)
..+..++.+.+.. .+...-..+|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+..+...+|.+|++|+.
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3446777777764 3444445677775 6888887654 665667777774 688888876 455566677888888888
Q ss_pred eecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcc
Q 036593 143 LQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222 (574)
Q Consensus 143 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 222 (574)
+++..+.+......+|. +.+|+.+.+..+ +..+...+|.++++|+.+.+..+ +......+|.+ .+|+.+.+.. .+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence 88887777644445555 578888888754 66667777888888888888764 55555666666 6788888743 34
Q ss_pred cccCCchhhcCCCCcCeeecccccce-----ecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccc
Q 036593 223 SGRLPSTIGHSLPNIEYLTLAINNLI-----GTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTT 297 (574)
Q Consensus 223 ~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 297 (574)
. .++...+..+++|+.+.+.++... .....+|.++++|+.+.+.+ .+......+|.++++|+.+.+..+ ++.
T Consensus 260 ~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 260 T-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp C-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred c-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 4 455555557788888877766543 45566777888888888874 466566777778888888887544 444
Q ss_pred cCCCCccccccccccCCCCCcEEEccCCCCCCCCChh
Q 036593 298 ESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPL 334 (574)
Q Consensus 298 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 334 (574)
++... |.+| +|+.+++.++.........
T Consensus 337 I~~~a--------F~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 337 INFSA--------FNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp ECTTS--------SSSS-CCCEEEECCSSCCBCCCSS
T ss_pred EcHHh--------CCCC-CCCEEEEcCCCCccccccc
Confidence 43333 7777 7888888777665444333
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=148.29 Aligned_cols=170 Identities=20% Similarity=0.297 Sum_probs=133.0
Q ss_pred CCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeE
Q 036593 314 CRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGL 393 (574)
Q Consensus 314 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 393 (574)
+..+..++++++.+++.. .+..+ ++++.|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 445666777777777654 23333 389999999998874 44 57888999999999999886554 8888999999
Q ss_pred eccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCcc
Q 036593 394 SLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSN 473 (574)
Q Consensus 394 ~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 473 (574)
++++|++++ ++. +.. ++|+.|++++|++++. ..+..+++|++|++++|.+.+. ..
T Consensus 91 ~L~~N~l~~-------------------l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~ 145 (263)
T 1xeu_A 91 SVNRNRLKN-------------------LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VM 145 (263)
T ss_dssp ECCSSCCSC-------------------CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GG
T ss_pred ECCCCccCC-------------------cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hH
Confidence 999998873 222 222 8899999999998753 3578889999999999998765 35
Q ss_pred ccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccccc
Q 036593 474 VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGP 517 (574)
Q Consensus 474 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 517 (574)
+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 146 l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 78899999999999999865 5688899999999999988854
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=135.19 Aligned_cols=129 Identities=26% Similarity=0.335 Sum_probs=83.3
Q ss_pred ceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCc-cccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCC
Q 036593 409 CHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPS-SLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSR 487 (574)
Q Consensus 409 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~ 487 (574)
+.+++++++++ .+|..+. ++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666665 4444332 2677777777766644443 366666777777777776666666666667777777777
Q ss_pred CcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 488 NQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 488 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
|++.+..+..|.++++|++|++++|++++..|..+..+++|+.|++++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 76666555566666677777777776666666666666667777777666653
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-16 Score=136.41 Aligned_cols=131 Identities=24% Similarity=0.257 Sum_probs=69.5
Q ss_pred CCCCeEECCCCeec-ccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEee
Q 036593 430 TSLRELRLGSNKLT-SSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLS 508 (574)
Q Consensus 430 ~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 508 (574)
++|++|++++|.+. +.++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 33444444555555555555555433 3445555555555555555544444444455666666
Q ss_pred CCCCcccccC-CccccCCcCCCeeeCCCCcccccCC---cCcccCCCCCeEeccCCcc
Q 036593 509 LASNQFQGPI-PESVGSLISLESLDLSGNNFSGKIP---KSLEALSHLKQFNVSQNML 562 (574)
Q Consensus 509 l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~l~l~~n~~ 562 (574)
+++|.+++.. +..+..+++|+.|++++|++....+ ..+..+++|+.|++++|++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 6666555321 1445555666666666666553322 2455566666666666654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.6e-14 Score=138.84 Aligned_cols=90 Identities=9% Similarity=0.064 Sum_probs=47.8
Q ss_pred cccCCcCCCCCC-CCceeecccccCcccCchhccCCCCCCEEEccCCc---CCcCCCccccCCCCCCEEEccCCcccccC
Q 036593 127 TGPIPNSLFNLS-KLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNN---LQDQIPTEIGNLQNLESLALGTNNLSGLI 202 (574)
Q Consensus 127 ~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 202 (574)
+.+...+|.++. .|+.+.+..+ ++.....+|.+|++|+.+.+..+. +..+...+|.++.+|+.+.+..+ +....
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 334455566653 4666666543 333455566666666666665432 44444555666666665555432 33344
Q ss_pred chhhcccCCCcEEEcc
Q 036593 203 PPAIFNISTIRVLNLH 218 (574)
Q Consensus 203 ~~~l~~~~~L~~L~l~ 218 (574)
..+|..+.+|+.+.+.
T Consensus 130 ~~aF~~c~~L~~i~lp 145 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIP 145 (394)
T ss_dssp TTTTTTCTTCCEEECC
T ss_pred hhhhhhhccccccccc
Confidence 4445555555555553
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=8.8e-16 Score=129.78 Aligned_cols=129 Identities=22% Similarity=0.269 Sum_probs=102.5
Q ss_pred CCCCCeEECCCCeec-ccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEe
Q 036593 429 LTSLRELRLGSNKLT-SSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETL 507 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 507 (574)
.++|+.|++++|.+. +..+..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888888887 56677777888888888888888765 667788888888888888886567777778889999
Q ss_pred eCCCCccccc-CCccccCCcCCCeeeCCCCcccccCC---cCcccCCCCCeEeccC
Q 036593 508 SLASNQFQGP-IPESVGSLISLESLDLSGNNFSGKIP---KSLEALSHLKQFNVSQ 559 (574)
Q Consensus 508 ~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~l~l~~ 559 (574)
++++|.+++. .+..+..+++|+.|++++|++....+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999888853 33678888889999999998886544 4678888999888764
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6.8e-16 Score=133.44 Aligned_cols=141 Identities=26% Similarity=0.194 Sum_probs=123.0
Q ss_pred CcccccCCCCCceEEccCCeee-ecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccC
Q 036593 398 NNLEGSIPYDLCHLELNGNKLS-GHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQK 476 (574)
Q Consensus 398 ~~~~~~~~~~l~~l~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~ 476 (574)
+.+....|..++.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..
T Consensus 16 ~~~~~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 16 LELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp HHHTTSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred hhhccCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 3445567789999999999998 67788889999999999999999855 78889999999999999998877777778
Q ss_pred CCCCCEEeCCCCcccccC-cccccCCCCCCEeeCCCCcccccCC---ccccCCcCCCeeeCCCCcccc
Q 036593 477 LKVLRVLDLSRNQLSGNI-PSTIGALVDLETLSLASNQFQGPIP---ESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 477 l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~~~~ 540 (574)
+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+..
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999999999998643 2678999999999999999996544 478999999999999999873
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-13 Score=135.74 Aligned_cols=136 Identities=13% Similarity=0.193 Sum_probs=89.1
Q ss_pred cCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccC
Q 036593 421 HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA 500 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 500 (574)
....+|..|..|+.+.+..+-. .....+|..+.+|+.+.+.. .+......+|.+|.+|+.++|..+ ++.+...+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 4456777888888888866543 25566777888888888853 444556677888888888888653 55566678888
Q ss_pred CCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccc
Q 036593 501 LVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563 (574)
Q Consensus 501 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~ 563 (574)
|.+|+.+.|..+ ++.....+|.+|++|+.+++.++.... ..+....+|+.+.+..+.+.
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 888888888654 555566788888888888888876442 35666778888887766543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-18 Score=175.18 Aligned_cols=163 Identities=25% Similarity=0.304 Sum_probs=109.9
Q ss_pred cCCcCccccCCCCeEe-ccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCC
Q 036593 379 TIPTSVGTLQQLQGLS-LEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYIL 457 (574)
Q Consensus 379 ~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 457 (574)
..+..++.+++|+.|+ ++.+.+. .+..+.+++|.++.. + ...|+.|++++|.+++ +|. +..+++|+
T Consensus 400 ~~~~~l~~l~~L~~L~~l~~n~~~-----~L~~l~l~~n~i~~l-~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~ 466 (567)
T 1dce_A 400 YEKETLQYFSTLKAVDPMRAAYLD-----DLRSKFLLENSVLKM-E-----YADVRVLHLAHKDLTV-LCH-LEQLLLVT 466 (567)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHHHHHHHHHHH-H-----HTTCSEEECTTSCCSS-CCC-GGGGTTCC
T ss_pred CCHHHHHHHHhcccCcchhhcccc-----hhhhhhhhccccccc-C-----ccCceEEEecCCCCCC-CcC-ccccccCc
Confidence 3444556666666666 4544432 122333334444321 1 1247888888888874 454 77788888
Q ss_pred eEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccC-CccccCCcCCCeeeCCCC
Q 036593 458 EINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI-PESVGSLISLESLDLSGN 536 (574)
Q Consensus 458 ~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n 536 (574)
+|++++|.+. .+|..+..+++|+.|++++|.+++ ++ .++++++|++|++++|.+++.. |..+..+++|+.|++++|
T Consensus 467 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred EeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 8888888887 566777888888888888888875 44 6778888888888888888665 788888888888888888
Q ss_pred cccccCCcC---cccCCCCCeEec
Q 036593 537 NFSGKIPKS---LEALSHLKQFNV 557 (574)
Q Consensus 537 ~~~~~~~~~---l~~l~~L~~l~l 557 (574)
++....+.. +..+|+|+.|++
T Consensus 544 ~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 544 SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCccHHHHHHHHCcccCccCC
Confidence 887544322 334778887764
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.3e-15 Score=127.73 Aligned_cols=128 Identities=26% Similarity=0.308 Sum_probs=65.0
Q ss_pred ceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCC
Q 036593 409 CHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRN 488 (574)
Q Consensus 409 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n 488 (574)
+.+++++++++ .+|..+ .++|++|++++|++.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 34555555554 223222 245555555555555444444555555555555555555444444455555555555555
Q ss_pred cccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 489 QLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 489 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 555444444455555555555555555433333455555555555555554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.9e-15 Score=129.16 Aligned_cols=155 Identities=26% Similarity=0.315 Sum_probs=115.6
Q ss_pred CeEeccCCcccc---cCCCCCceEEccCCeeeecCCc-cCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcc
Q 036593 391 QGLSLEDNNLEG---SIPYDLCHLELNGNKLSGHIPP-CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSL 466 (574)
Q Consensus 391 ~~L~l~~~~~~~---~~~~~l~~l~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l 466 (574)
+++++++++++. .++..++.|++++|.+++..+. .+..+++|++|++++|++++..+.++..+++|++|++++|.+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 556666666542 3445788999999998865554 478899999999999999877788888999999999999999
Q ss_pred eecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCcc-ccCCcCCCeeeCCCCcccccCCcC
Q 036593 467 NDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPES-VGSLISLESLDLSGNNFSGKIPKS 545 (574)
Q Consensus 467 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~ 545 (574)
.+..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+.. +. ..++...+.++......|..
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~~ 168 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSK 168 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTT
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCChH
Confidence 8888888888999999999999998887888888999999999999888543211 11 12333344455544445544
Q ss_pred cc
Q 036593 546 LE 547 (574)
Q Consensus 546 l~ 547 (574)
+.
T Consensus 169 l~ 170 (192)
T 1w8a_A 169 VR 170 (192)
T ss_dssp TT
T ss_pred Hc
Confidence 43
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-15 Score=126.91 Aligned_cols=126 Identities=22% Similarity=0.204 Sum_probs=103.8
Q ss_pred CceEEccCCeee-ecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCC
Q 036593 408 LCHLELNGNKLS-GHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLS 486 (574)
Q Consensus 408 l~~l~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~ 486 (574)
++.+++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 334444444443 35666778899999999999999855 778899999999999999987777777789999999999
Q ss_pred CCccccc-CcccccCCCCCCEeeCCCCcccccCC---ccccCCcCCCeeeCCC
Q 036593 487 RNQLSGN-IPSTIGALVDLETLSLASNQFQGPIP---ESVGSLISLESLDLSG 535 (574)
Q Consensus 487 ~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~ 535 (574)
+|.+.+. .+..+.++++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999864 33778999999999999999996655 4789999999999864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-17 Score=172.53 Aligned_cols=217 Identities=19% Similarity=0.157 Sum_probs=152.0
Q ss_pred cCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCcc
Q 036593 280 GNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKE 359 (574)
Q Consensus 280 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 359 (574)
..++.|+.|++++|.+.. ++..++.+++|+.|+++++.. ....+..+ ..+......|..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~---------Lp~~i~~l~~L~~L~l~~n~~-------l~~l~~ll-----~~~~~~~~~~~~ 404 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV---------LQSELESCKELQELEPENKWC-------LLTIILLM-----RALDPLLYEKET 404 (567)
T ss_dssp STTTTSSSCCCCHHHHHH---------HHHHHHHHHHHHHHCTTCHHH-------HHHHHHHH-----HHHCTGGGHHHH
T ss_pred ccCccceeccCChhhHHh---------hHHHHHHHHHHHHhccccchh-------hhhHHHHH-----HhcccccCCHHH
Confidence 456777777777777664 344466677777777654321 00000000 011122344455
Q ss_pred ccCCCCCcEEE-CcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECC
Q 036593 360 IGNLRGLILLT-LDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLG 438 (574)
Q Consensus 360 ~~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~ 438 (574)
+..+++|+.|+ ++.+.+ ..|+.+.+++|.++...+..++.|++++|.+++ +|. +..+++|+.|+++
T Consensus 405 l~~l~~L~~L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls 471 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYL-----------DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLS 471 (567)
T ss_dssp HHHHHHHHHHCGGGHHHH-----------HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECC
T ss_pred HHHHHhcccCcchhhccc-----------chhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecC
Confidence 66777777777 444332 234445555555555444556667777777664 565 8899999999999
Q ss_pred CCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccC-cccccCCCCCCEeeCCCCccccc
Q 036593 439 SNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNI-PSTIGALVDLETLSLASNQFQGP 517 (574)
Q Consensus 439 ~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~ 517 (574)
+|.++ .+|..+..+++|++|+|++|.+++ +| .+..+++|++|++++|.+.+.. |..++++++|+.|++++|.+++.
T Consensus 472 ~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 472 HNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred ccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 99998 778899999999999999999986 45 7899999999999999999775 88899999999999999999965
Q ss_pred CCc---cccCCcCCCeeeC
Q 036593 518 IPE---SVGSLISLESLDL 533 (574)
Q Consensus 518 ~~~---~l~~~~~L~~L~l 533 (574)
.+. .+..+++|+.|++
T Consensus 549 ~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 549 EGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCTTHHHHHCTTCSEEEC
T ss_pred ccHHHHHHHHCcccCccCC
Confidence 442 2345788998864
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=126.83 Aligned_cols=127 Identities=24% Similarity=0.293 Sum_probs=86.7
Q ss_pred ceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCC
Q 036593 409 CHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRN 488 (574)
Q Consensus 409 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n 488 (574)
..+++++++++ .+|..+ .++|++|++++|.++ .++..+..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35666777766 444433 256777777777776 45566777777777777777776666666777777777777777
Q ss_pred cccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 489 QLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 489 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
.+....+..|.++++|++|+|++|.++...+..|..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666666777777777777777777555555667777777777777665
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-15 Score=130.88 Aligned_cols=136 Identities=21% Similarity=0.219 Sum_probs=108.6
Q ss_pred cCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCC
Q 036593 425 CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDL 504 (574)
Q Consensus 425 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L 504 (574)
.+..+++|++|++++|++.. .+......++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 35567889999999998874 444333345899999999998775 568889999999999999986655666889999
Q ss_pred CEeeCCCCcccccCCc--cccCCcCCCeeeCCCCcccccCCcC----cccCCCCCeEeccCCccccc
Q 036593 505 ETLSLASNQFQGPIPE--SVGSLISLESLDLSGNNFSGKIPKS----LEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 505 ~~L~l~~n~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~l~l~~n~~~~~ 565 (574)
++|++++|.+. ..+. .+..+++|+.|++++|++. ..|.. +..+++|+.|++++|++...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 99999999987 4554 7888899999999999998 44553 88899999999999886543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.9e-16 Score=164.32 Aligned_cols=187 Identities=23% Similarity=0.311 Sum_probs=109.6
Q ss_pred CCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeec
Q 036593 364 RGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLT 443 (574)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 443 (574)
+.++.+++..+.+... ....++.++|+.+.+.+ ++++.+.+. ..+..+..+++|+.|+|++|.+.
T Consensus 173 ~~~~~l~L~~n~~~~~------~~~~l~~l~Ls~~~i~~--------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~ 237 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA------NQALLQHKKLSQYSIDE--------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF 237 (727)
T ss_dssp ----------------------------------------------------------------CCCCCCEEECTTSCCS
T ss_pred CccceEEeeCCCCCcc------hhhHhhcCccCcccccC--------cccccccee-cChhhhccCCCCcEEECCCCCCC
Confidence 5577777777766542 12234555555555442 233334444 55667788888999999999887
Q ss_pred ccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCcccc
Q 036593 444 SSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVG 523 (574)
Q Consensus 444 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 523 (574)
.++..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..++++++|++|+|++|.++ .+|..|.
T Consensus 238 -~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~ 313 (727)
T 4b8c_D 238 -NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFG 313 (727)
T ss_dssp -CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTT
T ss_pred -CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhh
Confidence 56666668889999999999887 66777888899999999999988 56778888899999999999887 6777788
Q ss_pred CCcCCCeeeCCCCcccccCCcCcccCC-CCCeEeccCCccccccCCC
Q 036593 524 SLISLESLDLSGNNFSGKIPKSLEALS-HLKQFNVSQNMLEGEIPVK 569 (574)
Q Consensus 524 ~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~l~l~~n~~~~~~p~~ 569 (574)
.+++|+.|+|++|++....|..+..+. .+..+++++|.+++.+|..
T Consensus 314 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 889999999999998876666654432 1223567777777777764
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-15 Score=163.12 Aligned_cols=190 Identities=19% Similarity=0.191 Sum_probs=113.6
Q ss_pred cCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCe
Q 036593 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRE 434 (574)
Q Consensus 355 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~ 434 (574)
..+..+..++.|+.|++++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-------------------~lp~~~~~l~~L~~ 274 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-------------------ELPAEIKNLSNLRV 274 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-------------------CCCGGGGGGTTCCE
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-------------------ccChhhhCCCCCCE
Confidence 34556778888888888888887 45555667888888888888877 55666788888999
Q ss_pred EECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCC-CCCEeeCCCCc
Q 036593 435 LRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALV-DLETLSLASNQ 513 (574)
Q Consensus 435 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~ 513 (574)
|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..|..+++|+.|+|++|.+.+..+..+..+. .+..+++++|.
T Consensus 275 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 275 LDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp EECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCc
Confidence 999999887 66888888889999999999886 4566688889999999999988877766665432 22346788888
Q ss_pred ccccCCccccCCcCCCeeeCCCC--------cccccCCcCcccCCCCCeEeccCCccccccCCCCCC
Q 036593 514 FQGPIPESVGSLISLESLDLSGN--------NFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSF 572 (574)
Q Consensus 514 ~~~~~~~~l~~~~~L~~L~l~~n--------~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~~~~~ 572 (574)
+++..|. .|+.|++++| .+....+..+..+..++...+++|-+.+.++....|
T Consensus 353 l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~~~~~~ 413 (727)
T 4b8c_D 353 PEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYATPKMY 413 (727)
T ss_dssp CCCCCCC------C-----------------------------------------CCCGGGCCTTTC
T ss_pred ccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccccccCccccc
Confidence 8765554 3455666666 233333334455566666777888777666555443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-14 Score=124.97 Aligned_cols=125 Identities=26% Similarity=0.366 Sum_probs=95.5
Q ss_pred CeEeccCCcccc---cCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcce
Q 036593 391 QGLSLEDNNLEG---SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467 (574)
Q Consensus 391 ~~L~l~~~~~~~---~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~ 467 (574)
+.+++++++++. .+|..+++|++++|.++ .+|..+..+++|+.|++++|.+++..+.+|..+++|++|++++|.+.
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 345555555442 34557888888888887 56677888888888888888888777777888888888888888888
Q ss_pred ecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccc
Q 036593 468 DSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 468 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
...+..|..+++|++|++++|.+....+..|..+++|+.|++++|.+..
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7777778888888888888888886666677788888888888887764
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-14 Score=121.55 Aligned_cols=133 Identities=26% Similarity=0.299 Sum_probs=75.7
Q ss_pred CCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCC
Q 036593 432 LRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLAS 511 (574)
Q Consensus 432 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 511 (574)
.+.++++++++. ..+..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+.++++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345566666554 223222 24566666666666554444555666666666666666544444555666666666666
Q ss_pred CcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccC
Q 036593 512 NQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIP 567 (574)
Q Consensus 512 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 567 (574)
|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 66665444455566666666666666664444445556666666666666655443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-14 Score=123.96 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=105.0
Q ss_pred ccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCC
Q 036593 384 VGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463 (574)
Q Consensus 384 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 463 (574)
+..+++|++|++++|+++ .++......++|++|++++|.+++. ..+..+++|++|++++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-------------------~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~ 73 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-------------------VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNN 73 (176)
T ss_dssp EECTTSCEEEECTTSCCC-------------------SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCS
T ss_pred cCCcCCceEEEeeCCCCc-------------------hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCC
Confidence 445667777777777666 2333333345899999999998754 6788889999999999
Q ss_pred CcceecCCccccCCCCCCEEeCCCCcccccCc-ccccCCCCCCEeeCCCCcccccCCc----cccCCcCCCeeeCCCCcc
Q 036593 464 NSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIP-STIGALVDLETLSLASNQFQGPIPE----SVGSLISLESLDLSGNNF 538 (574)
Q Consensus 464 ~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~----~l~~~~~L~~L~l~~n~~ 538 (574)
|.+....+..+..+++|++|++++|.+..... ..+..+++|+.|++++|.+. ..+. .+..+++|+.|++++|..
T Consensus 74 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 74 NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp SCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99987666666889999999999999974332 37888999999999999998 4555 388899999999999987
Q ss_pred cc
Q 036593 539 SG 540 (574)
Q Consensus 539 ~~ 540 (574)
..
T Consensus 153 ~~ 154 (176)
T 1a9n_A 153 KE 154 (176)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-11 Score=118.26 Aligned_cols=81 Identities=2% Similarity=0.097 Sum_probs=47.5
Q ss_pred ccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCc
Q 036593 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNI 237 (574)
Q Consensus 158 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 237 (574)
+....+|+.+.+... ++.+...+|.++.+|+++.+..+ +..+...+|.++ +|+.+.+..+ +. .+....+.. .+|
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TDL 115 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CCC
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CCc
Confidence 445567888887764 55566777888888888888643 555666666665 5666655432 22 233333322 245
Q ss_pred Ceeeccc
Q 036593 238 EYLTLAI 244 (574)
Q Consensus 238 ~~L~l~~ 244 (574)
+.+.+..
T Consensus 116 ~~i~lp~ 122 (379)
T 4h09_A 116 DDFEFPG 122 (379)
T ss_dssp SEEECCT
T ss_pred ccccCCC
Confidence 5555543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.5e-11 Score=116.27 Aligned_cols=317 Identities=9% Similarity=0.029 Sum_probs=163.5
Q ss_pred cCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCC
Q 036593 132 NSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIST 211 (574)
Q Consensus 132 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 211 (574)
.++....+|+.+.+... ++.+...+|.+|.+|+.+.+..+ +..+...+|.++ +|+++.+..+ +......+|..+ +
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D 114 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence 34566778888888653 44466678999999999999765 666777888887 6888877643 554555666554 7
Q ss_pred CcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEcc
Q 036593 212 IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIR 291 (574)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 291 (574)
|+.+.+..+- . .+....+..+ .++.+.+..+ +......+|..+..++.+.+.............. ...
T Consensus 115 L~~i~lp~~~-~-~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~------- 182 (379)
T 4h09_A 115 LDDFEFPGAT-T-EIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNK------- 182 (379)
T ss_dssp CSEEECCTTC-C-EECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EET-------
T ss_pred cccccCCCcc-c-cccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-ccc-------
Confidence 8888886542 2 2222222222 3444433321 2222333344444444444333221100000000 000
Q ss_pred CCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEEC
Q 036593 292 TNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTL 371 (574)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l 371 (574)
.. .....+..+..+..+.+.... .......+..+.+++.+.+
T Consensus 183 -~~-----------~~~~~~~~~~~~~~~~~~~~~--------------------------~~i~~~~f~~~~~l~~i~~ 224 (379)
T 4h09_A 183 -NK-----------TILESYPAAKTGTEFTIPSTV--------------------------KTVTAYGFSYGKNLKKITI 224 (379)
T ss_dssp -TS-----------SEEEECCTTCCCSEEECCTTC--------------------------CEECTTTTTTCSSCSEEEC
T ss_pred -cc-----------ceeccccccccccccccccce--------------------------eEEeecccccccccceeee
Confidence 00 001112222333333322110 0122233455566666666
Q ss_pred cCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCcccc
Q 036593 372 DFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLW 451 (574)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 451 (574)
..+ +......+|.++..|+.+.+..+ ++ .....+|.++.+|+.+.+..+ +......+|.
T Consensus 225 ~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~------------------~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~ 283 (379)
T 4h09_A 225 TSG-VTTLGDGAFYGMKALDEIAIPKN-VT------------------SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCS 283 (379)
T ss_dssp CTT-CCEECTTTTTTCSSCCEEEECTT-CC------------------EECTTTTTTCTTCCEEEECCC-CSEECTTTTT
T ss_pred ccc-eeEEccccccCCccceEEEcCCC-cc------------------EeCccccceeehhcccccccc-ceeccccccc
Confidence 433 33344455566666666655433 11 133445666666666666543 3334445666
Q ss_pred CCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCc
Q 036593 452 SLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLI 526 (574)
Q Consensus 452 ~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 526 (574)
.|.+|+.+.+.++.+......+|.+|.+|+.++|..+ +..+...+|.+|++|+.+.+..+ ++.....+|.+++
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 6666666666666665555566666666666666533 44445556666666666666543 4434455565553
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-15 Score=135.36 Aligned_cols=162 Identities=23% Similarity=0.313 Sum_probs=124.1
Q ss_pred ccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCC
Q 036593 384 VGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463 (574)
Q Consensus 384 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 463 (574)
+...+.++.++++.+.+.+..|. ++ .+|..+..+++|++|++++|.+.+ ++ .+..+++|++|++++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~-----------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~ 79 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP-----------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGR 79 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT-----------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEE
T ss_pred HHhcccccCcchheeEeccccCc-----------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCC
Confidence 34455666666666666654331 11 333477888999999999999985 55 788899999999999
Q ss_pred CcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCC-ccccCCcCCCeeeCCCCcccccC
Q 036593 464 NSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIP-ESVGSLISLESLDLSGNNFSGKI 542 (574)
Q Consensus 464 ~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~ 542 (574)
|.+. .++..+..+++|++|++++|++.+. + .+..+++|++|++++|.+....+ ..+..+++|+.|++++|++....
T Consensus 80 n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 80 NLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp EEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred CCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 9987 4566667778999999999999853 3 57888999999999999885332 46888999999999999997655
Q ss_pred CcC----------cccCCCCCeEeccCCcccc
Q 036593 543 PKS----------LEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 543 ~~~----------l~~l~~L~~l~l~~n~~~~ 564 (574)
|.. +..+++|+.|+ +++++.
T Consensus 157 ~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 157 KENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 543 78899999987 676654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-15 Score=131.90 Aligned_cols=146 Identities=25% Similarity=0.325 Sum_probs=92.6
Q ss_pred CCCcEEEccCCcccccCc------hhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCC
Q 036593 66 SFLMSLDVTLNNFYGHLP------NELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSK 139 (574)
Q Consensus 66 ~~L~~L~L~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 139 (574)
..++.++++++.+.+..+ ..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 344444444444443333 367777777777777777764 44 6777777777777777776 45555556677
Q ss_pred CceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCC-ccccCCCCCCEEEccCCcccccCch----------hhcc
Q 036593 140 LEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIP-TEIGNLQNLESLALGTNNLSGLIPP----------AIFN 208 (574)
Q Consensus 140 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~----------~l~~ 208 (574)
|++|++++|.+.+ +| .+.++++|++|++++|.+..... ..+..+++|++|++++|++....+. .+..
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 7777777777763 33 46677777777777777664322 3566777777777777776544332 2556
Q ss_pred cCCCcEEE
Q 036593 209 ISTIRVLN 216 (574)
Q Consensus 209 ~~~L~~L~ 216 (574)
+++|+.|+
T Consensus 173 l~~L~~Ld 180 (198)
T 1ds9_A 173 LPNLKKLD 180 (198)
T ss_dssp CSSCSEEC
T ss_pred CCCcEEEC
Confidence 66666664
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=110.48 Aligned_cols=107 Identities=25% Similarity=0.280 Sum_probs=88.2
Q ss_pred CCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCC
Q 036593 431 SLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLA 510 (574)
Q Consensus 431 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 510 (574)
+.+.+++++|.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|++....+..|.++++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578899999887 455444 3788999999999888778888888999999999999887777778888999999999
Q ss_pred CCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 511 SNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 511 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
+|++.+..+..|..+++|+.|++++|++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999886666678888899999999998874
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-14 Score=141.64 Aligned_cols=183 Identities=20% Similarity=0.166 Sum_probs=98.6
Q ss_pred CCCcEEECcCCCCcccCCcCccc-----cCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECC
Q 036593 364 RGLILLTLDFNDLNGTIPTSVGT-----LQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLG 438 (574)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~ 438 (574)
+.|+.|++++|.++......+.. .++|++|++++|.+++.. .......+++|++|+|+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~-----------------~~~l~~~L~~L~~L~Ls 134 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-----------------LRTLLPVFLRARKLGLQ 134 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-----------------HHHTHHHHHTEEEEECC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH-----------------HHHHHHHHHhccHhhcC
Confidence 55677777777766433322222 256777777776665321 11112234466777777
Q ss_pred CCeecccCCccc-----cCCCCCCeEeCCCCcceec----CCccccCCCCCCEEeCCCCcccccC----cccccCCCCCC
Q 036593 439 SNKLTSSIPSSL-----WSLEYILEINLSSNSLNDS----LPSNVQKLKVLRVLDLSRNQLSGNI----PSTIGALVDLE 505 (574)
Q Consensus 439 ~n~~~~~~~~~~-----~~~~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~ 505 (574)
+|.++......+ ...++|++|+|++|.+++. ++..+..+++|++|++++|.+.+.. ...+..+++|+
T Consensus 135 ~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~ 214 (372)
T 3un9_A 135 LNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214 (372)
T ss_dssp SSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCC
T ss_pred CCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcC
Confidence 776653322222 2356677777777766543 2233455677777777777765432 34455566777
Q ss_pred EeeCCCCccccc----CCccccCCcCCCeeeCCCCcccccCCcCcccCC---C--CCeEe--ccCCccc
Q 036593 506 TLSLASNQFQGP----IPESVGSLISLESLDLSGNNFSGKIPKSLEALS---H--LKQFN--VSQNMLE 563 (574)
Q Consensus 506 ~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~---~--L~~l~--l~~n~~~ 563 (574)
+|+|++|.+++. +..++...++|+.|++++|.++......+..+. . |+.+. +..+.++
T Consensus 215 ~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred eEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 777777777643 223344556777777777777654443333321 1 55555 5555544
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=108.90 Aligned_cols=107 Identities=23% Similarity=0.281 Sum_probs=93.3
Q ss_pred CceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCC
Q 036593 408 LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSR 487 (574)
Q Consensus 408 l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~ 487 (574)
.+.+++++++++ .+|..+ .++|++|++++|.+++..+..|..+++|++|+|++|.+....+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 458899999998 466555 37899999999999988888899999999999999999888777889999999999999
Q ss_pred CcccccCcccccCCCCCCEeeCCCCccccc
Q 036593 488 NQLSGNIPSTIGALVDLETLSLASNQFQGP 517 (574)
Q Consensus 488 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 517 (574)
|++....+..|.++++|++|+|++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999977777799999999999999988743
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-12 Score=108.14 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=87.6
Q ss_pred CCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCC
Q 036593 432 LRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLAS 511 (574)
Q Consensus 432 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 511 (574)
-+.++++++++. .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|++....+..|.++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368899999886 5555443 7899999999999888788888899999999999999876666778889999999999
Q ss_pred CcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 512 NQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 512 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
|++....+..|..+++|+.|++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99886655668888999999999998873
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=107.15 Aligned_cols=105 Identities=23% Similarity=0.296 Sum_probs=92.0
Q ss_pred ceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCC
Q 036593 409 CHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRN 488 (574)
Q Consensus 409 ~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n 488 (574)
..+++++++++ .+|..+. ++|++|++++|++.+..+..+..+++|++|+|++|.+....+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 47889999987 5666553 89999999999999888889999999999999999998877777889999999999999
Q ss_pred cccccCcccccCCCCCCEeeCCCCcccc
Q 036593 489 QLSGNIPSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 489 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
++....+..|..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9997666678999999999999999884
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.6e-14 Score=135.49 Aligned_cols=164 Identities=18% Similarity=0.160 Sum_probs=119.1
Q ss_pred cCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCc-CCCCCCeEECCCCeecccCCcc-ccCCCCCCeEeCCCC
Q 036593 387 LQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLA-SLTSLRELRLGSNKLTSSIPSS-LWSLEYILEINLSSN 464 (574)
Q Consensus 387 ~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~L~~~ 464 (574)
.+.|++|++++|.++..... .+...+. ..++|++|+|++|.++...... ...+++|++|+|++|
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~--------------~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCT--------------VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHH--------------HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred HhhCCEEEecCCCCCHHHHH--------------HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 45677777777776532110 1112222 3479999999999986543332 234578999999999
Q ss_pred cceecCCccc-----cCCCCCCEEeCCCCcccccC----cccccCCCCCCEeeCCCCcccccC----CccccCCcCCCee
Q 036593 465 SLNDSLPSNV-----QKLKVLRVLDLSRNQLSGNI----PSTIGALVDLETLSLASNQFQGPI----PESVGSLISLESL 531 (574)
Q Consensus 465 ~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L 531 (574)
.+.+.....+ ...++|++|++++|.+.+.. ...+..+++|++|+|++|.+++.. ...+...++|+.|
T Consensus 137 ~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L 216 (372)
T 3un9_A 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216 (372)
T ss_dssp CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEE
T ss_pred CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeE
Confidence 9976543333 35689999999999987533 344577899999999999998643 4567778899999
Q ss_pred eCCCCcccccCC----cCcccCCCCCeEeccCCcccc
Q 036593 532 DLSGNNFSGKIP----KSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 532 ~l~~n~~~~~~~----~~l~~l~~L~~l~l~~n~~~~ 564 (574)
++++|.+++... ..+...++|++|++++|+|..
T Consensus 217 ~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred ECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 999999986433 345567999999999999864
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.6e-10 Score=109.95 Aligned_cols=102 Identities=22% Similarity=0.222 Sum_probs=83.3
Q ss_pred EccCC-eeeecCCccCcCCCCCCeEECCC-CeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCc
Q 036593 412 ELNGN-KLSGHIPPCLASLTSLRELRLGS-NKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQ 489 (574)
Q Consensus 412 ~l~~~-~l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 489 (574)
+++++ +++ .+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+.+..+..|..+++|+.|+|++|+
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 34443 444 5677 88888999999996 99887777888899999999999999988888888999999999999999
Q ss_pred ccccCcccccCCCCCCEeeCCCCcccc
Q 036593 490 LSGNIPSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 490 ~~~~~~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
+....+..+..++ |+.|+|.+|.+..
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9866666666555 9999999998874
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.04 E-value=6.9e-10 Score=107.92 Aligned_cols=105 Identities=25% Similarity=0.262 Sum_probs=88.1
Q ss_pred CeEECCCC-eecccCCccccCCCCCCeEeCCC-CcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCC
Q 036593 433 RELRLGSN-KLTSSIPSSLWSLEYILEINLSS-NSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLA 510 (574)
Q Consensus 433 ~~L~l~~n-~~~~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 510 (574)
..++++++ .++ .+|. +..+.+|++|+|++ |.+....+..|..+++|+.|+|++|++.+..+..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 787 4666 88888999999996 99988877888999999999999999988888888999999999999
Q ss_pred CCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 511 SNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 511 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
+|+++...+..|..++ |+.|++.+|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999866566666665 9999999998874
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-10 Score=109.79 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=76.0
Q ss_pred CCCCCeEECCCCeecccCCcccc--CCCCCCeEeCCC--Ccc-eec----CCccc--cCCCCCCEEeCCCCcccccCccc
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLW--SLEYILEINLSS--NSL-NDS----LPSNV--QKLKVLRVLDLSRNQLSGNIPST 497 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~L~~--~~l-~~~----~~~~~--~~l~~L~~L~l~~n~~~~~~~~~ 497 (574)
.++|+.|+|..|.+.......+. .+++|++|+|+. +.. .+. +...+ ..+|+|++|++.+|.+.+.....
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 56777777777766533333332 567777777642 111 110 01112 24678888888887775332222
Q ss_pred c---cCCCCCCEeeCCCCcccccC----CccccCCcCCCeeeCCCCcccccCCcCccc-CCCCCeEeccCCc
Q 036593 498 I---GALVDLETLSLASNQFQGPI----PESVGSLISLESLDLSGNNFSGKIPKSLEA-LSHLKQFNVSQNM 561 (574)
Q Consensus 498 ~---~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~l~l~~n~ 561 (574)
+ ..+++|++|+|+.|.+++.. +..++.+++|+.|++++|.+++..-..+.. + ..++++++++
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 2 24678888888888777632 233455678888888888776543333433 2 3567777665
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.5e-09 Score=102.25 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=41.1
Q ss_pred hcCCCCCCEEEccCCcCc---------cCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCch
Q 036593 86 LGKLGRLKFISFSFNKLS---------GSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPS 156 (574)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 156 (574)
...+++|+.|.+...... +.+...+..+|+|+.|.++++.-. ..+. + .+++|++|++..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 344556666665433211 112234455667777777665211 1222 2 256677777766655432222
Q ss_pred hcc--CCCCCCEEEcc
Q 036593 157 GIG--NLSNLFDLDLR 170 (574)
Q Consensus 157 ~l~--~l~~L~~L~l~ 170 (574)
.+. .+++|++|+++
T Consensus 212 ~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHSBCTTCCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 332 56677777664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=3.2e-09 Score=92.47 Aligned_cols=115 Identities=15% Similarity=0.210 Sum_probs=56.1
Q ss_pred cCcCCCCCCeEECCCC-eeccc----CCccccCCCCCCeEeCCCCcceec----CCccccCCCCCCEEeCCCCccccc--
Q 036593 425 CLASLTSLRELRLGSN-KLTSS----IPSSLWSLEYILEINLSSNSLNDS----LPSNVQKLKVLRVLDLSRNQLSGN-- 493 (574)
Q Consensus 425 ~~~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~-- 493 (574)
.+...++|++|+|++| .+... +...+...++|++|+|++|.+.+. +...+...++|++|+|++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445666666776666 55432 223344455666666666665442 122333445555555555555432
Q ss_pred --CcccccCCCCCCEeeC--CCCcccccC----CccccCCcCCCeeeCCCCccc
Q 036593 494 --IPSTIGALVDLETLSL--ASNQFQGPI----PESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 494 --~~~~~~~~~~L~~L~l--~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+...+...++|++|+| ++|.++... ...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1233444455555555 445554321 222333345555555555443
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.6e-09 Score=93.04 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=94.4
Q ss_pred CCccccCCCCCCeEeCCCC-cceec----CCccccCCCCCCEEeCCCCcccccC----cccccCCCCCCEeeCCCCcccc
Q 036593 446 IPSSLWSLEYILEINLSSN-SLNDS----LPSNVQKLKVLRVLDLSRNQLSGNI----PSTIGALVDLETLSLASNQFQG 516 (574)
Q Consensus 446 ~~~~~~~~~~L~~L~L~~~-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~ 516 (574)
+...+...++|++|+|++| .+.+. +...+...++|++|+|++|.+.+.. ...+...++|++|+|++|.+++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4456777899999999999 88654 3445677899999999999997543 3445667899999999999986
Q ss_pred c----CCccccCCcCCCeeeC--CCCcccccC----CcCcccCCCCCeEeccCCcccc
Q 036593 517 P----IPESVGSLISLESLDL--SGNNFSGKI----PKSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 517 ~----~~~~l~~~~~L~~L~l--~~n~~~~~~----~~~l~~l~~L~~l~l~~n~~~~ 564 (574)
. +..++...++|++|++ ++|.++... .+.+...++|++|++++|.+..
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 4 3566777889999999 899998643 3445667999999999998753
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.56 E-value=8.4e-09 Score=87.04 Aligned_cols=85 Identities=12% Similarity=0.077 Sum_probs=57.9
Q ss_pred CCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCc-ccccCcccccCC----CCCCEeeCCCCc-ccccCCccccCCc
Q 036593 453 LEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQ-LSGNIPSTIGAL----VDLETLSLASNQ-FQGPIPESVGSLI 526 (574)
Q Consensus 453 ~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~----~~L~~L~l~~n~-~~~~~~~~l~~~~ 526 (574)
-..|++|++++|.+++.....+..|++|++|+|++|. +++.....+..+ ++|++|+|++|. +++..-..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3467778888777776666666777777788777774 555444455543 467777777774 6665555566677
Q ss_pred CCCeeeCCCCc
Q 036593 527 SLESLDLSGNN 537 (574)
Q Consensus 527 ~L~~L~l~~n~ 537 (574)
+|+.|++++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777775
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-08 Score=85.16 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=51.3
Q ss_pred CCCCeEECCCCeecccCCccccCCCCCCeEeCCCCc-ceecCCccccCC----CCCCEEeCCCCc-ccccCcccccCCCC
Q 036593 430 TSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNS-LNDSLPSNVQKL----KVLRVLDLSRNQ-LSGNIPSTIGALVD 503 (574)
Q Consensus 430 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~~~~ 503 (574)
.+|++|++++|.++......+..+++|++|+|++|. +++.....+..+ ++|++|++++|. +++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356777777776665555556666777777776663 555444444443 357777777664 55554555666677
Q ss_pred CCEeeCCCCc
Q 036593 504 LETLSLASNQ 513 (574)
Q Consensus 504 L~~L~l~~n~ 513 (574)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777664
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.19 E-value=2.7e-07 Score=84.22 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=45.2
Q ss_pred cCCCCCCEEeCCCCccccc--CcccccCCCCCCEeeCCCCcccccCCccccCCc--CCCeeeCCCCcccccCC-------
Q 036593 475 QKLKVLRVLDLSRNQLSGN--IPSTIGALVDLETLSLASNQFQGPIPESVGSLI--SLESLDLSGNNFSGKIP------- 543 (574)
Q Consensus 475 ~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~------- 543 (574)
..+++|++|+|++|.+.+. ++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++....|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 3456666666666666542 223445566666666666666643 2233333 66777777776664333
Q ss_pred cCcccCCCCCeEe
Q 036593 544 KSLEALSHLKQFN 556 (574)
Q Consensus 544 ~~l~~l~~L~~l~ 556 (574)
..+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1245667777665
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.16 E-value=3.4e-07 Score=83.53 Aligned_cols=81 Identities=32% Similarity=0.350 Sum_probs=57.6
Q ss_pred cCCCCCCeEeCCCCcceec--CCccccCCCCCCEEeCCCCccccc-CcccccCCCCCCEeeCCCCcccccCC-------c
Q 036593 451 WSLEYILEINLSSNSLNDS--LPSNVQKLKVLRVLDLSRNQLSGN-IPSTIGALVDLETLSLASNQFQGPIP-------E 520 (574)
Q Consensus 451 ~~~~~L~~L~L~~~~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~-------~ 520 (574)
..+++|++|+|++|.+.+. ++..+..+++|+.|+|++|.+.+. ....+.++ +|++|++++|.+.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 4577888888888888763 345556788888888888888754 12233333 89999999998876444 2
Q ss_pred cccCCcCCCeee
Q 036593 521 SVGSLISLESLD 532 (574)
Q Consensus 521 ~l~~~~~L~~L~ 532 (574)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467778888875
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=6.2e-06 Score=70.97 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=53.7
Q ss_pred cCCCCCCeEECCCC-eeccc----CCccccCCCCCCeEeCCCCcceecC----CccccCCCCCCEEeCCCCcccccCc--
Q 036593 427 ASLTSLRELRLGSN-KLTSS----IPSSLWSLEYILEINLSSNSLNDSL----PSNVQKLKVLRVLDLSRNQLSGNIP-- 495 (574)
Q Consensus 427 ~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~L~~~~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~-- 495 (574)
..-+.|++|+|+++ ++... +..++....+|++|+|++|.+.+.. ...+..-+.|++|+|++|.|.+...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666776664 55322 2334445556666666666665432 2233344556666666665543221
Q ss_pred --ccccCCCCCCEeeCCCC---cccc----cCCccccCCcCCCeeeCCCCc
Q 036593 496 --STIGALVDLETLSLASN---QFQG----PIPESVGSLISLESLDLSGNN 537 (574)
Q Consensus 496 --~~~~~~~~L~~L~l~~n---~~~~----~~~~~l~~~~~L~~L~l~~n~ 537 (574)
..+...+.|++|+|++| .+.. .+..++...++|+.|+++.|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 23334445555555543 2221 122333444555555555443
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=7.6e-06 Score=70.41 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=82.6
Q ss_pred CccccCCCCCCeEeCCCC-cceec----CCccccCCCCCCEEeCCCCcccccCc----ccccCCCCCCEeeCCCCccccc
Q 036593 447 PSSLWSLEYILEINLSSN-SLNDS----LPSNVQKLKVLRVLDLSRNQLSGNIP----STIGALVDLETLSLASNQFQGP 517 (574)
Q Consensus 447 ~~~~~~~~~L~~L~L~~~-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~ 517 (574)
...+..-++|++|+|+++ .+.+. +...+..-+.|+.|+|++|++.+... ..+...+.|++|+|++|.|+..
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 344556788999999885 77543 34556677889999999999875433 3445578899999999988864
Q ss_pred ----CCccccCCcCCCeeeCCCC---ccccc----CCcCcccCCCCCeEeccCCcc
Q 036593 518 ----IPESVGSLISLESLDLSGN---NFSGK----IPKSLEALSHLKQFNVSQNML 562 (574)
Q Consensus 518 ----~~~~l~~~~~L~~L~l~~n---~~~~~----~~~~l~~l~~L~~l~l~~n~~ 562 (574)
+.+++...+.|++|+|++| .++.. +.+.+..-++|+.|+++.|.+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3345666678999999865 44432 234456678899999987764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0048 Score=49.36 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=42.9
Q ss_pred CEEeCCCCccc-ccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccc
Q 036593 481 RVLDLSRNQLS-GNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540 (574)
Q Consensus 481 ~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 540 (574)
..++-++++++ ..+|..+ .++|++|+|++|.++...+..|..+++|+.|+|++|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36777777775 2334333 2478999999999987666778888899999999988763
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.008 Score=48.03 Aligned_cols=37 Identities=30% Similarity=0.343 Sum_probs=18.4
Q ss_pred CCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccc
Q 036593 479 VLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQ 515 (574)
Q Consensus 479 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 515 (574)
+|+.|+|++|.++.+....|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555554444444455555555555555443
|
| >2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus} | Back alignment and structure |
|---|
Probab=86.82 E-value=1.4 Score=32.85 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=24.0
Q ss_pred eecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCC
Q 036593 467 NDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASN 512 (574)
Q Consensus 467 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 512 (574)
+.....+|.+|.+|+++.|-.+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3334455556666666665543 33344555666666666665543
|
| >2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus} | Back alignment and structure |
|---|
Probab=80.95 E-value=3 Score=31.03 Aligned_cols=45 Identities=18% Similarity=0.021 Sum_probs=22.3
Q ss_pred ecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCC
Q 036593 442 LTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSR 487 (574)
Q Consensus 442 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~ 487 (574)
++.....+|.+|.+|+.+.+..+- +.....+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 333344455555555555555432 223344555555555555544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 574 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-20 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-14 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-13 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-19 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-17 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-13 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-15 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 8e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 9e-05 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-14 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-12 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-12 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-12 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-10 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 5e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 6e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 5e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 8e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.002 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 7e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 9e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 7e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.003 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 9e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 1e-05 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.001 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 1e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.004 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-04 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 0.001 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 3e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.002 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 5e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 7e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.002 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.004 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.003 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 90.2 bits (222), Expect = 2e-20
Identities = 74/270 (27%), Positives = 117/270 (43%), Gaps = 8/270 (2%)
Query: 31 SWVGISCD--SRHQRVKALNLSGMGLGG--TIPPHLGNLSFLMSLDVTLN-NFYGHLPNE 85
+W+G+ CD ++ RV L+LSG+ L IP L NL +L L + N G +P
Sbjct: 37 TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96
Query: 86 LGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQA 145
+ KL +L ++ + +SG+IP ++ + L + N ++G +P S+ +L L +
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 146 SFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPA 205
N I G IP G+ S LF N NL + L N L G
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216
Query: 206 IFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLD 265
+ + ++L N + L N+ L L N + GT+P LT L L+
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLS--KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 266 LGSNSFSGHIPNTFGNLRHLNVLSIRTNNL 295
+ N+ G IP GNL+ +V + N
Sbjct: 275 VSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 72.1 bits (175), Expect = 2e-14
Identities = 63/271 (23%), Positives = 104/271 (38%), Gaps = 19/271 (7%)
Query: 156 SGIGNLSNLFDLDLRHNNLQ--DQIPTEIGNLQNLESLAL-GTNNLSGLIPPAIFNISTI 212
+ +LDL NL IP+ + NL L L + G NNL G IPPAI ++ +
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 213 RVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFS 272
L + SG + + L + N L GT+P S+++ L+G+ N S
Sbjct: 104 HYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 273 GHIPNTFGNLRHLNVLSIRTNN--------------LTTESSSADQWSFLSSLTNCRKLS 318
G IP+++G+ L + N L S + +S+ +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 319 YLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNG 378
+ S +L ++ G++P+ + L+ L L + FN+L G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 379 TIPTSVGTLQQLQGLSLEDNNLEGSIPYDLC 409
IP G LQ+ + +N P C
Sbjct: 283 EIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 69.4 bits (168), Expect = 2e-13
Identities = 57/293 (19%), Positives = 97/293 (33%), Gaps = 30/293 (10%)
Query: 253 DSLTNASKLIGLDLGSNSFSG--HIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSS 310
D+ T ++ LDL + IP++ NL +LN L I N +
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-------GPIPPA 96
Query: 311 LTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLT 370
+ +L YL + P + +L + L G++P I +L L+ +T
Sbjct: 97 IAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 371 LDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLT 430
D N ++G IP S G+ +L N
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE----- 210
Query: 431 SLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQL 490
S L+ + + + + V K L LDL N++
Sbjct: 211 --------------GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256
Query: 491 SGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIP 543
G +P + L L +L+++ N G IP+ G+L + + N P
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 59.0 bits (141), Expect = 4e-10
Identities = 59/261 (22%), Positives = 99/261 (37%), Gaps = 12/261 (4%)
Query: 309 SSLTNCRKLSYLVLDSNPLGGI--LPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGL 366
+ T +++ L L L +P + N + L G IP I L L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 367 ILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHL------ELNGNKLSG 420
L + +++G IP + ++ L L N L G++P + L +GN++SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 421 HIPPCLASLTSLRE-LRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKV 479
IP S + L + + N+LT IP + L S ++ + S +
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA--NLNLAFVDLSRNMLEGDASVLFGSDK 221
Query: 480 LRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539
+G +L L L +N+ G +P+ + L L SL++S NN
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 540 GKIPKSLEALSHLKQFNVSQN 560
G+IP L + N
Sbjct: 282 GEIP-QGGNLQRFDVSAYANN 301
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 8/228 (3%)
Query: 354 GSIPKEIGNLRGLILLTLDFND-LNGTIPTSVGTLQQLQGLSLEDNNLEGSI------PY 406
IP + NL L L + + L G IP ++ L QL L + N+ G+I
Sbjct: 66 YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 407 DLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSL 466
L L+ + N LSG +PP ++SL +L + N+++ +IP S + L +++ +
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRN 184
Query: 467 NDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLI 526
+ + + S + + VG
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 527 SLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
+L LDL N G +P+ L L L NVS N L GEIP G+ +
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR 292
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 88.9 bits (219), Expect = 1e-19
Identities = 79/385 (20%), Positives = 141/385 (36%), Gaps = 29/385 (7%)
Query: 184 NLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLA 243
L LG N++ + ++ + L + + L N+ + +
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEY-LNNLTQINFS 74
Query: 244 INNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLN----VLSIRTNNLTTES 299
N L P L N +KL+ + + +N + P + L +
Sbjct: 75 NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132
Query: 300 SSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKE 359
+ +++++ LS L G + + S
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192
Query: 360 IGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEG----SIPYDLCHLELNG 415
+ L L L N ++ P + T L LSL N L+ + +L L+L
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGTLASLTNLTDLDLAN 250
Query: 416 NKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQ 475
N++S P L+ LT L EL+LG+N++++ P L L + + L+ N L D S +
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPIS 304
Query: 476 KLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSG 535
LK L L L N +S P + +L L+ L A+N+ S+ +L ++ L
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGH 360
Query: 536 NNFSGKIPKSLEALSHLKQFNVSQN 560
N S P L L+ + Q ++
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 81.6 bits (200), Expect = 3e-17
Identities = 77/402 (19%), Positives = 139/402 (34%), Gaps = 41/402 (10%)
Query: 113 LSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHN 172
L++ L N+T + + +L ++ LQA I G+ L+NL ++ +N
Sbjct: 21 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNN 76
Query: 173 NLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGH 232
L D P + NL L + + N ++ + P A T L + L +
Sbjct: 77 QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134
Query: 233 SLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRT 292
+ + T++ + + + S NL L L I +
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQL----------SFGNQVTDLKPLANLTTLERLDISS 184
Query: 293 NNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKL 352
N + S +S L L L+ +N + I P +L +L
Sbjct: 185 N----------KVSDISVLAKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQL 231
Query: 353 GGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLE 412
+ +L L L L N ++ P + L +L L L N + P
Sbjct: 232 KD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTAL 287
Query: 413 LNGNKL--SGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSL 470
N +++L +L L L N ++ P + SL + + ++N ++D
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-- 343
Query: 471 PSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASN 512
S++ L + L NQ+S P + L + L L
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 69.3 bits (168), Expect = 3e-13
Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 14/187 (7%)
Query: 34 GISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLK 93
I+ + L+L+G L L +L+ L LD+ N P L L +L
Sbjct: 211 DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 266
Query: 94 FISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGN 153
+ N++S P L+ L + L N + P NL L L FN I
Sbjct: 267 ELKLGANQISNISPLAG--LTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDI 322
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIR 213
P + +L+ L L +N + D + + NL N+ L+ G N +S L P + N++ I
Sbjct: 323 SP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 376
Query: 214 VLNLHSN 220
L L+
Sbjct: 377 QLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 64.3 bits (155), Expect = 1e-11
Identities = 82/370 (22%), Positives = 144/370 (38%), Gaps = 43/370 (11%)
Query: 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNK 101
+V L +G+ + L+ L ++ + N P L L +L I + N+
Sbjct: 44 DQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 99
Query: 102 LSGSIPTWIGVLSKLQIMSLRNNNITGPIP------------NSLFNLSKLEMLQASFNV 149
++ P + P+ N++ ++S L L + +
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159
Query: 150 IDGNIPSGIGNLSNLFDLDLRHNN-LQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFN 208
GN + + L+NL L+ + + + + L NLESL N +S + P
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL--GI 217
Query: 209 ISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGS 268
++ + L+L+ NQ T+ SL N+ L LA N + P L+ +KL L LG+
Sbjct: 218 LTNLDELSLNGNQLKD--IGTLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 272
Query: 269 NSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLG 328
N S P L L L + N Q +S ++N + L+YL L N +
Sbjct: 273 NQISNISP--LAGLTALTNLELNEN----------QLEDISPISNLKNLTYLTLYFNNIS 320
Query: 329 GILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQ 388
I P + + + LQ + K+ S + NL + L+ N ++ P + L
Sbjct: 321 DISP--VSSLT-KLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLT 373
Query: 389 QLQGLSLEDN 398
++ L L D
Sbjct: 374 RITQLGLNDQ 383
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.3 bits (181), Expect = 3e-15
Identities = 43/297 (14%), Positives = 91/297 (30%), Gaps = 21/297 (7%)
Query: 31 SWVGISCDSRH---------QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGH 81
+ C L+L + NL L +L + N
Sbjct: 11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70
Query: 82 LPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLE 141
P L +L+ + S N+L L +L++ + + N L + +E
Sbjct: 71 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130
Query: 142 MLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL 201
+ G + L + + N+ G +L L L N ++ +
Sbjct: 131 LGTNPLK-SSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKV 186
Query: 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKL 261
++ ++ + L L N S ++ ++ E NN + +P L + +
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN--NNKLVKVPGGLADHKYI 244
Query: 262 IGLDLGSNSFSGHIPNTF------GNLRHLNVLSIRTNNLTTESSSADQWSFLSSLT 312
+ L +N+ S N F + +S+ +N + + +
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.0 bits (175), Expect = 2e-14
Identities = 52/268 (19%), Positives = 90/268 (33%), Gaps = 16/268 (5%)
Query: 317 LSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDL 376
+ L L +N + I N +L + K+ P L L L L N L
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 377 NGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLC-----HLELNGNKLSGHIPPCLASLTS 431
TLQ+L+ E + S+ L L N K SG +
Sbjct: 92 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151
Query: 432 LRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLS 491
L +R+ +T+ SL E++L N + ++++ L L L LS N +S
Sbjct: 152 LSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208
Query: 492 GNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG------KIPKS 545
++ L L +N +P + ++ + L NN S P
Sbjct: 209 AVDNGSLANTPHLRELH-LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267
Query: 546 LEALSHLKQFNVSQNMLEGEIPVKGSFK 573
+ ++ N ++ +F+
Sbjct: 268 NTKKASYSGVSLFSNPVQYWEIQPSTFR 295
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.4 bits (158), Expect = 3e-12
Identities = 41/243 (16%), Positives = 76/243 (31%), Gaps = 26/243 (10%)
Query: 105 SIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNL 164
+P + ++ L+NN IT NL L L N I P L L
Sbjct: 24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 165 FDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHS--NQF 222
L L N L++ LQ L N ++ + ++ + V+ L + +
Sbjct: 82 ERLYLSKNQLKELPEKMPKTLQELRVH---ENEITKVRKSVFNGLNQMIVVELGTNPLKS 138
Query: 223 SGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL 282
SG + + Y+ +A N+ + L L L N + + L
Sbjct: 139 SGIENGAFQG-MKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGL 194
Query: 283 RHLNVLSIR---------------TNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPL 327
+L L + + ++ L + + + + L +N +
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254
Query: 328 GGI 330
I
Sbjct: 255 SAI 257
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.1 bits (157), Expect = 4e-12
Identities = 44/233 (18%), Positives = 88/233 (37%), Gaps = 9/233 (3%)
Query: 337 NFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLE 396
+ K+ + NL+ L L L N ++ P + L +L+ L L
Sbjct: 28 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87
Query: 397 DNNLEG---SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS--IPSSLW 451
N L+ +P L L ++ N+++ L + + LG+N L SS +
Sbjct: 88 KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147
Query: 452 SLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLAS 511
++ + I ++ ++ L L L N+++ +++ L +L L L+
Sbjct: 148 GMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204
Query: 512 NQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564
N S+ + L L L+ N K+P L +++ + N +
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.5 bits (140), Expect = 5e-10
Identities = 32/165 (19%), Positives = 69/165 (41%), Gaps = 4/165 (2%)
Query: 403 SIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLS 462
+P D L+L NK++ +L +L L L +NK++ P + L + + LS
Sbjct: 28 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87
Query: 463 SNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESV 522
N L + + L+ LRV + ++ ++ + + ++ +E L + G +
Sbjct: 88 KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAF 146
Query: 523 GSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIP 567
+ L + ++ N + IP+ L L + ++ N +
Sbjct: 147 QGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDA 188
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.1 bits (139), Expect = 8e-10
Identities = 48/272 (17%), Positives = 97/272 (35%), Gaps = 14/272 (5%)
Query: 27 NMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNEL 86
N +++ + + + L L + P L L L ++ N
Sbjct: 40 NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP 99
Query: 87 GKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQAS 146
L L+ K+ S+ + + +++ + +G + + KL ++ +
Sbjct: 100 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAFQGMKKLSYIRIA 158
Query: 147 FNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAI 206
I IP G+ +L +L L N + + L NL L L N++S + ++
Sbjct: 159 DTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 215
Query: 207 FNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIG------TIPDSLTNASK 260
N +R L+L++N+ I+ + L NN+ P T +
Sbjct: 216 ANTPHLRELHLNNNKLVKVPGGL--ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 273
Query: 261 LIGLDLGSN--SFSGHIPNTFGNLRHLNVLSI 290
G+ L SN + P+TF + + +
Sbjct: 274 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.4 bits (137), Expect = 1e-09
Identities = 49/226 (21%), Positives = 82/226 (36%), Gaps = 12/226 (5%)
Query: 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPY------DL 408
+PK++ LL L N + L+ L L L +N + P L
Sbjct: 24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 409 CHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLND 468
L L+ N+L +L LR K+ S+ + L ++E+ + +
Sbjct: 82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSG 140
Query: 469 SLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISL 528
Q +K L + ++ ++ IP G L L L N+ S+ L +L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197
Query: 529 ESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
L LS N+ S SL HL++ +++ N L K
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Query: 458 EINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGP 517
+ S L + +P ++ +LDL N+++ L +L TL L +N+
Sbjct: 14 VVQCSDLGL-EKVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70
Query: 518 IPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEI 566
P + L+ LE L LS N K + L L+ + +
Sbjct: 71 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV 119
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.3 bits (98), Expect = 9e-05
Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 3/144 (2%)
Query: 431 SLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQL 490
LR ++ L +P L ++L +N + + + + LK L L L N++
Sbjct: 11 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67
Query: 491 SGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALS 550
S P LV LE L L+ NQ + + +L L + + L +
Sbjct: 68 SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127
Query: 551 HLKQFNVSQNMLEGEIPVKGSFKN 574
++ E K
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKK 151
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.0 bits (172), Expect = 3e-14
Identities = 61/297 (20%), Positives = 104/297 (35%), Gaps = 44/297 (14%)
Query: 250 TIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLS 309
+P + AS+ + L N S +F R+L +L + +N L ++A L
Sbjct: 25 AVPVGIPAASQR--IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 310 SLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILL 369
+ +L P L L L
Sbjct: 83 EQLDLS--------------------------------DNAQLRSVDPATFHGLGRLHTL 110
Query: 370 TLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP------YDLCHLELNGNKLSGHIP 423
LD L P L LQ L L+DN L+ +L HL L+GN++S
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170
Query: 424 PCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVL 483
L SL L L N++ P + L ++ + L +N+L+ + L+ L+ L
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230
Query: 484 DLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540
L+ N + + L+ +S++ +P+ L + L+ N+ G
Sbjct: 231 RLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 1e-12
Identities = 37/198 (18%), Positives = 63/198 (31%), Gaps = 4/198 (2%)
Query: 27 NMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNEL 86
N +L V + R+ L+L GL P L+ L L + N +
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
Query: 87 GKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQAS 146
LG L + N++S L L + L N + P++ +L +L L
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 147 FNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAI 206
N + + L L L L N L+ ++ + +P +
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRL 268
Query: 207 FNISTIRVLNLHSNQFSG 224
+ L +N G
Sbjct: 269 AGRD---LKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.6 bits (158), Expect = 2e-12
Identities = 62/277 (22%), Positives = 86/277 (31%), Gaps = 26/277 (9%)
Query: 119 MSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQI 178
S + +P + + + N I + NL L L N L
Sbjct: 16 TSCPQQGLQA-VPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 179 PTEIGNLQNLESLALGTNNLSGLIPPAIFNI-STIRVLNLHSNQFSGRLPSTIGHSLPNI 237
L LE L L N + PA F+ + L+L L + L +
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAAL 131
Query: 238 EYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTT 297
+YL L N L D+ + L L L N S F L L+ L + N +
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
Query: 298 ESSSA----------------DQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSAS 341
A +L R L YL L+ NP A
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAW 249
Query: 342 LQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNG 378
LQ F ++ S+P+ L G L L NDL G
Sbjct: 250 LQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.4 bits (155), Expect = 5e-12
Identities = 46/255 (18%), Positives = 77/255 (30%), Gaps = 30/255 (11%)
Query: 44 VKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHL--------------------- 82
+ + L G + L L + N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 83 ----PNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLS 138
P LGRL + L P L+ LQ + L++N + ++ +L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 139 KLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNL 198
L L N I L +L L L N + P +L L +L L NNL
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 199 SGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNA 258
S L A+ + ++ L L+ N + ++ + + + ++P L
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271
Query: 259 SKLIGLDLGSNSFSG 273
L +N G
Sbjct: 272 DL---KRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.6 bits (145), Expect = 1e-10
Identities = 51/238 (21%), Positives = 88/238 (36%), Gaps = 8/238 (3%)
Query: 337 NFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLE 396
A+ Q + + ++ R L +L L N L + L L+ L L
Sbjct: 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88
Query: 397 DNNLEGSIP-------YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSS 449
DN S+ L L L+ L P L +L+ L L N L + +
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 450 LWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSL 509
L + + L N ++ + L L L L +N+++ P L L TL L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 510 ASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIP 567
+N E++ L +L+ L L+ N + + + L++F S + + +P
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLP 265
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (136), Expect = 1e-09
Identities = 40/266 (15%), Positives = 88/266 (33%), Gaps = 6/266 (2%)
Query: 167 LDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRL 226
LDL NL + + + Q + + + + + F+ ++ ++L ++
Sbjct: 5 LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 62
Query: 227 PSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLN 286
I ++ L+L L I ++L S L+ L+L S
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122
Query: 287 VLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFY 346
+ + + + Q + +L+ N L L+ +
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182
Query: 347 AYECKLGGSIPKEIGNLRGLILLTLDF-NDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP 405
+ L +E L L L+L D+ +G + L+ L + +G++
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242
Query: 406 Y---DLCHLELNGNKLSGHIPPCLAS 428
L HL++N + + P + +
Sbjct: 243 LLKEALPHLQINCSHFTTIARPTIGN 268
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 95 ISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGN- 153
+ + L + + + + + + P+ F+ +++ + S +VI+ +
Sbjct: 5 LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVST 62
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESL 191
+ + S L +L L L D I + NL L
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 5e-05
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 481 RVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSG 540
+ LDL+ L ++ + + + + P+ E S ++ +DLS +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEV 60
Query: 541 K-IPKSLEALSHLKQFNVSQNMLEGEIP 567
+ L S L+ ++ L I
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIV 88
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 6e-05
Identities = 45/279 (16%), Positives = 93/279 (33%), Gaps = 15/279 (5%)
Query: 47 LNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSG-S 105
L+L+G L + L + + + +F E R++ + S + + +
Sbjct: 5 LDLTGKNLHPDVTGRLLSQGVI-AFRCP-RSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62
Query: 106 IPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEML--QASFNVIDGNIPSGIGNLSN 163
+ + SKLQ +SL ++ PI N+L S L L + + + + + S
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122
Query: 164 LFDLDLRHNN------LQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNL 217
L +L+L +Q + + L N + + + L+L
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182
Query: 218 HSNQFSGRLPSTIGHSLPNIEYLTLA-INNLIGTIPDSLTNASKLIGLDLGSNSFSGHIP 276
+ L +++L+L+ ++I L L L + G +
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242
Query: 277 NTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCR 315
L HL I ++ TT + + +
Sbjct: 243 LLKEALPHLQ---INCSHFTTIARPTIGNKKNQEIWGIK 278
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 4e-04
Identities = 40/291 (13%), Positives = 85/291 (29%), Gaps = 44/291 (15%)
Query: 264 LDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLD 323
LDL + P+ G L V++ R + A+ +S ++ ++ L
Sbjct: 5 LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF-------RVQHMDLS 54
Query: 324 SNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTS 383
++ + I + + LQ+ +L I + L+ L L
Sbjct: 55 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 114
Query: 384 VGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLT 443
L + + + + + N
Sbjct: 115 TLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS---------GYRKNLQK 164
Query: 444 SSIPSSLWSLEYILEINLSSNSL-NDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALV 502
S + + + ++ ++LS + + + +L L+ L LSR
Sbjct: 165 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC-------------- 210
Query: 503 DLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLK 553
+G + +L++L + G G + EAL HL+
Sbjct: 211 ---------YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 5e-08
Identities = 43/211 (20%), Positives = 62/211 (29%), Gaps = 8/211 (3%)
Query: 85 ELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQ 144
E+ K+ ++ L+ ++P + I+ L N + +L ++L L
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 145 ASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPP 204
+ G L L LDL HN LQ S +P
Sbjct: 62 LDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPL 117
Query: 205 AIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGL 264
LP + P +E L+LA NNL L L L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 265 DLGSNSFSGHIPNTFGNLRHLNVLSIRTNNL 295
L NS IP F L + N
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 6e-08
Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 6/187 (3%)
Query: 355 SIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIP-YDLCHLEL 413
++P ++ + +L L N L ++ +L L+L+ L L L
Sbjct: 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81
Query: 414 NGNKLSGHIP--PCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLP 471
+ +L +L L + N+LTS +L L + E+ L N L P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 472 SNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESL 531
+ L L L+ N L+ + L +L+TL L N IP+ L
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200
Query: 532 DLSGNNF 538
L GN +
Sbjct: 201 FLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 6e-06
Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 31/194 (15%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALG---------TNNLSGLIPP 204
+P + + L L N L + L L L L L
Sbjct: 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82
Query: 205 AIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTL-----------AINNLIGTIPD 253
+ + + L + + + L ++ L N L P
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 254 SLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTN 313
LT KL L L +N+ + L +L+ L ++ N+L ++
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL---------YTIPKGFFG 193
Query: 314 CRKLSYLVLDSNPL 327
L + L NP
Sbjct: 194 SHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 6e-06
Identities = 45/211 (21%), Positives = 71/211 (33%), Gaps = 32/211 (15%)
Query: 35 ISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKF 94
+S + H V N L +PP L L ++ N Y L RL
Sbjct: 6 VSKVASHLEV---NCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQ 59
Query: 95 ISFSFNKLSGSIPTWIGVLSKLQIMSLRNN-----------------------NITGPIP 131
++ + + G L L + L +N +T
Sbjct: 60 LNLDRAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 132 NSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESL 191
+L L +L+ L N + P + L L L +NNL + + L+NL++L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 192 ALGTNNLSGLIPPAIFNISTIRVLNLHSNQF 222
L N+L IP F + LH N +
Sbjct: 178 LLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 8e-05
Identities = 39/184 (21%), Positives = 63/184 (34%), Gaps = 8/184 (4%)
Query: 337 NFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLE 396
+ + E L + L L+ + T GTL L L L
Sbjct: 28 DLPKDTTILHLSENLLYTFSLATLMPYTRL--TQLNLDRAELTKLQVDGTLPVLGTLDLS 85
Query: 397 DNNLEGSIPYDLCHLE-----LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLW 451
N L+ ++ N+L+ L L L+EL L N+L + P L
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145
Query: 452 SLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLAS 511
+ +++L++N+L + + L+ L L L N L IP L L
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204
Query: 512 NQFQ 515
N +
Sbjct: 205 NPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 452 SLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLAS 511
+ LE+N +L +LP ++ K +L LS N L +T+ L L+L
Sbjct: 8 KVASHLEVNCDKRNL-TALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 512 NQFQ 515
+
Sbjct: 65 AELT 68
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 0.002
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 474 VQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDL 533
V K+ ++ + L+ +P + D L L+ N ++ L L+L
Sbjct: 6 VSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 534 SGNNF 538
Sbjct: 63 DRAEL 67
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 52.1 bits (123), Expect = 7e-08
Identities = 53/326 (16%), Positives = 98/326 (30%), Gaps = 22/326 (6%)
Query: 236 NIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLR-------HLNVL 288
L L L ++P+ + L L NS + +P +L+ +L L
Sbjct: 39 QAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93
Query: 289 SIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAY 348
S L S +Q L L N L + +D+N L + + +
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 349 ECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDN-NLEGSIPYD 407
E ++P L + G + L++ L +
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213
Query: 408 LCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLN 467
L S + + S + L + N+ +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273
Query: 468 DSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLIS 527
+ + S L L++S N+L +P+ LE L + N +PE +
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAE-VPELPQ---N 325
Query: 528 LESLDLSGNNFSGKIPKSLEALSHLK 553
L+ L + N + P E++ L+
Sbjct: 326 LKQLHVEYNPLR-EFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 48.7 bits (114), Expect = 9e-07
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 97 FSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPS 156
+ N S I + + L+ +++ NN + +P L +L SFN + +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIA---SFNHL-AEVPE 321
Query: 157 GIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNL 188
NL L + +N L+ + P ++++L
Sbjct: 322 LPQNLKQ---LHVEYNPLR-EFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 47.1 bits (110), Expect = 3e-06
Identities = 47/311 (15%), Positives = 92/311 (29%), Gaps = 15/311 (4%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIR 213
+P +L +L N+L ++P +L++L LS L P + +
Sbjct: 53 LPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN 108
Query: 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSG 273
L + I +++ L +L + +L +
Sbjct: 109 QLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIY 168
Query: 274 HIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLD-SNPLGGILP 332
N+ L L + + L LT + L+ + +
Sbjct: 169 ADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEA 228
Query: 333 PLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQG 392
+ + + L L N + I + L+
Sbjct: 229 LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEE 288
Query: 393 LSLEDNNLEGSIPYDLCHLE---LNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSS 449
L++ +N L +P LE + N L+ +P +L++L + N L P
Sbjct: 289 LNVSNNKLI-ELPALPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDI 342
Query: 450 LWSLEYILEIN 460
S+E L +N
Sbjct: 343 PESVED-LRMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.8 bits (91), Expect = 7e-04
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 485 LSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPK 544
N S I S LE L++++N+ +P L E L S N+ + ++P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVP- 320
Query: 545 SLEALSHLKQFNVSQNMLEGEIPVKGSFKN 574
E +LKQ +V N L + S ++
Sbjct: 321 --ELPQNLKQLHVEYNPLREFPDIPESVED 348
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.9 bits (86), Expect = 0.003
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 48 NLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIP 107
I L L+V+ N LP +L RL SFN L+ +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPRLERL---IASFNHLA-EVP 320
Query: 108 TWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEM 142
L+ + + N + P+ ++ L M
Sbjct: 321 EL---PQNLKQLHVEYNPLRE-FPDIPESVEDLRM 351
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (117), Expect = 5e-07
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 5/72 (6%)
Query: 480 LRVLDLSRNQLSGN-IPSTIGALVDLETLSLASNQFQG----PIPESVGSLISLESLDLS 534
++ LD+ +LS + L + + L I ++ +L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 535 GNNFSGKIPKSL 546
N +
Sbjct: 64 SNELGDVGVHCV 75
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (115), Expect = 9e-07
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 480 LRVLDLSRNQLSGN----IPSTIGALVDLETLSLASNQFQGPIPESVGSLI-----SLES 530
LRVL L+ +S + + +T+ A L L L++N + + LE
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 531 LDLSGNNFSGKIPKSLEAL 549
L L +S ++ L+AL
Sbjct: 431 LVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (113), Expect = 1e-06
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 456 ILEINLSSNSLNDS-LPSNVQKLKVLRVLDLSRNQLSG----NIPSTIGALVDLETLSLA 510
I +++ L+D+ + L+ +V+ L L+ +I S + L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 511 SNQFQGPIPESVGSLI-----SLESLDLSGNNF 538
SN+ V + ++ L L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (112), Expect = 2e-06
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 163 NLFDLDLRHNNLQDQIPTEI-GNLQNLESLALGTNNLSG----LIPPAIFNISTIRVLNL 217
++ LD++ L D E+ LQ + + L L+ I A+ + LNL
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 218 HSNQFSGRLPSTIGHSLPN 236
SN+ + L
Sbjct: 63 RSNELGDVGVHCVLQGLQT 81
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (106), Expect = 1e-05
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 212 IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNL----IGTIPDSLTNASKLIGLDLG 267
I+ L++ + S + + L + + L L I +L L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 268 SNSFSGHIPNTFGNLRHLNVLSIRTNNL 295
SN + I+ +L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSL 91
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (104), Expect = 2e-05
Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 431 SLRELRLGSNKLTSSIPSSLWS-LEYILEINLSSNSLND----SLPSNVQKLKVLRVLDL 485
++ L + +L+ + + L L+ + L L + + S ++ L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 486 SRNQLSGNIPSTIGALVDLETLSL 509
N+L + + + +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKI 86
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 7e-05
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 116 LQIMSLRNNNITGPIPNSLF-NLSKLEMLQASFNVIDG----NIPSGIGNLSNLFDLDLR 170
+Q + ++ ++ L L + ++++ + +I S + L +L+LR
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 171 HNNLQDQIPTEIGNLQNLESLALGTNNLSG 200
N L D + S + +L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (95), Expect = 2e-04
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 504 LETLSLASNQFQG----PIPESVGSLISLESLDLSGNNFSGKIPKSL-EAL----SHLKQ 554
L L LA + ++ + SL LDLS N L E++ L+Q
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430
Query: 555 FNVSQNMLEGEIP 567
+ E+
Sbjct: 431 LVLYDIYWSEEME 443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 4e-04
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 12/94 (12%)
Query: 160 NLSNLFDLDLRHNNLQDQ----IPTEIGNLQNLESLALGTNNLSGLIPPAIF-----NIS 210
S L L L ++ D + + +L L L N L +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 211 TIRVLNLHSNQFSGRLPSTIGH---SLPNIEYLT 241
+ L L+ +S + + P++ ++
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (91), Expect = 7e-04
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 10/93 (10%)
Query: 140 LEMLQASFNVI-DGNIPSGIGNLSNLFDLDLRHNNLQDQ----IPTEIGNLQNLESLALG 194
++ L + D + L + L L + I + + L L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 195 TNNLSGLIPPAIF-----NISTIRVLNLHSNQF 222
+N L + + I+ L+L +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (91), Expect = 7e-04
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 390 LQGLSLEDNNLEGSIPYDLC-------HLELNGNKLSG----HIPPCLASLTSLRELRLG 438
+Q L ++ L + +L + L+ L+ I L +L EL L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 439 SNKLTSSIPSSLWSLEYILEINLSSNSLND 468
SN+L + + SL +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (91), Expect = 7e-04
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 264 LDLGSNSFS-GHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVL 322
LD+ S L+ V+ + LT S+L L+ L L
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD----ISSALRVNPALAELNL 62
Query: 323 DSNPLGGILPPLIGN 337
SN LG + +
Sbjct: 63 RSNELGDVGVHCVLQ 77
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 0.001
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 12/94 (12%)
Query: 208 NISTIRVLNLHSNQFSGRLPSTIGHSL---PNIEYLTLAINNLIGTIPDSLTNA-----S 259
S +RVL L S S++ +L ++ L L+ N L L +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 260 KLIGLDLGSNSFSGHIPNTFGNLR----HLNVLS 289
L L L +S + + L L V+S
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 0.001
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 136 NLSKLEMLQASFNVIDGN----IPSGIGNLSNLFDLDLRHNNLQDQIPTEIG-----NLQ 186
S L +L + + + + + + +L +LDL +N L D ++
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 187 NLESLALGTNNLSGLIPPAI 206
LE L L S + +
Sbjct: 427 LLEQLVLYDIYWSEEMEDRL 446
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 0.001
Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 23/98 (23%)
Query: 408 LCHLELNGNKLSG----HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463
L L L +S + L + SLREL L +N L + L
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV------------ 418
Query: 464 NSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGAL 501
+S+ L+ L L S + + AL
Sbjct: 419 ----ESVRQPGCLLE---QLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (88), Expect = 0.002
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 184 NLQNLESLALGTNNLSGL----IPPAIFNISTIRVLNLHSNQFSGR----LPSTIGHSLP 235
L L L ++S + + ++R L+L +N L ++
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 236 NIEYLTLAINNLIGTIPDSLTNASK 260
+E L L + D L K
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEK 451
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 1e-05
Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 6/131 (4%)
Query: 113 LSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHN 172
+ + + LR I I N L + + + S N I G L L L + +N
Sbjct: 17 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNN 73
Query: 173 NLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLP---ST 229
+ L +L L L N+L L
Sbjct: 74 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133
Query: 230 IGHSLPNIEYL 240
+ + +P + L
Sbjct: 134 VIYKVPQVRVL 144
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 0.001
Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 2/130 (1%)
Query: 160 NLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHS 219
N +LDLR + I L +++ N + L + ++N +
Sbjct: 16 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR 74
Query: 220 NQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDS-LTNASKLIGLDLGSNSFSGHIPNT 278
G L + ++ L P + L + + L L + +
Sbjct: 75 ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 134
Query: 279 FGNLRHLNVL 288
+ + VL
Sbjct: 135 IYKVPQVRVL 144
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 1e-04
Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 6/143 (4%)
Query: 412 ELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLP 471
EL ++ + ++ + L L S L + + +N S+ + +L
Sbjct: 3 ELKPEQVE-QLKLIMSKRYDGSQQALDLKGLRS--DPDLVAQNIDVVLNRRSS-MAATLR 58
Query: 472 SNVQKLKVLRVLDLSRNQLSG--NIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLE 529
+ + L L+LS N+L ++ S + +L+ L+L+ N+ + + LE
Sbjct: 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 530 SLDLSGNNFSGKIPKSLEALSHL 552
L L GN+ S +S +
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAI 141
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (82), Expect = 0.004
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 406 YDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS--SIPSSLWSLEYILEINLSS 463
YD L+ L P L + L S+ + I ++ L L ++ +
Sbjct: 20 YDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLS-LNLSNNR 76
Query: 464 NSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPE 520
D + S VQK L++L+LS N+L + LE L L N +
Sbjct: 77 LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD 133
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 40.2 bits (92), Expect = 2e-04
Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 15/184 (8%)
Query: 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKL 261
IP I L L+ N+ + LP++ L L N L G P++ AS +
Sbjct: 23 IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80
Query: 262 IGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLV 321
L LG N F L L L++ N ++ + + L+ L
Sbjct: 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS--------FEHLNSLTSLN 132
Query: 322 LDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIP 381
L SNP + F+ L+ P + +R + + L ++ +
Sbjct: 133 LASNPFNCNCH--LAWFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSE 187
Query: 382 TSVG 385
S G
Sbjct: 188 NSEG 191
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 38.2 bits (87), Expect = 0.001
Identities = 36/164 (21%), Positives = 63/164 (38%), Gaps = 6/164 (3%)
Query: 92 LKFISFSFNKLSGSIPTWI-GVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVI 150
+ + N+L + G L L + L+ N +TG PN+ S ++ LQ N I
Sbjct: 31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
Query: 151 DGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNIS 210
L L L+L N + +P +L +L SL L +N + A F
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AE 149
Query: 211 TIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDS 254
+R +L+ PS + +++ L + + +S
Sbjct: 150 WLRKKSLNGGAARCGAPS----KVRDVQIKDLPHSEFKCSSENS 189
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 3e-04
Identities = 26/229 (11%), Positives = 60/229 (26%), Gaps = 6/229 (2%)
Query: 245 NNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQ 304
+ + IP L I L F L + I N++ +
Sbjct: 17 ESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 74
Query: 305 WSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLR 364
+ + + +L NP P + S +++
Sbjct: 75 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 134
Query: 365 GLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPP 424
+ + + + L +++ + L L L+ N +P
Sbjct: 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN 194
Query: 425 -CLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPS 472
+ L + ++ S L +L+ + + + LP+
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.002
Identities = 31/209 (14%), Positives = 60/209 (28%), Gaps = 5/209 (2%)
Query: 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVID 151
+ F KL L+ + + N++ I +F+ +
Sbjct: 31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 90
Query: 152 GNIPSGIGNLSNLFDLDLRHNN--LQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNI 209
+ + L +N ++ + L + N I F
Sbjct: 91 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 150
Query: 210 STIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIP-DSLTNASKLIGLDLGS 268
+ + L N+ + + ++ L L+ NN + +P D AS + LD+
Sbjct: 151 LSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 210
Query: 269 NSFSGHIPNTFGNLRHLNVLSIRTNNLTT 297
NL+ L S NL
Sbjct: 211 TRIHSLPSYGLENLKKLRARST--YNLKK 237
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.003
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 140 LEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLS 199
E+ + N ++ S LD+ + + NL+ L + + NL
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236
Query: 200 GL 201
L
Sbjct: 237 KL 238
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.9 bits (90), Expect = 3e-04
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 9/126 (7%)
Query: 433 RELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSG 492
R L L LT L L + ++LS N L P+ + L+ L VL S N
Sbjct: 1 RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA--L 55
Query: 493 NIPSTIGALVDLETLSLASNQFQG-PIPESVGSLISLESLDLSGNNFSGK---IPKSLEA 548
+ L L+ L L +N+ Q + + S L L+L GN+ + + E
Sbjct: 56 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
Query: 549 LSHLKQ 554
L +
Sbjct: 116 LPSVSS 121
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.0 bits (85), Expect = 0.001
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 154 IPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIR 213
+ + L + LDL HN L+ P + L+ LE L N L + + N+ ++
Sbjct: 12 VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV--DGVANLPRLQ 68
Query: 214 VLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIG 249
L L +N+ S P + L L N+L
Sbjct: 69 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 5e-04
Identities = 32/221 (14%), Positives = 70/221 (31%), Gaps = 31/221 (14%)
Query: 121 LRNNNITGPIP-NSLF---NLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQD 176
L + IT P P +F ++ + + L+++ + +++++
Sbjct: 3 LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS 60
Query: 177 QIPTEIGNLQNLESLALGTNNLSG------LIPPAIFNISTIRVLNLHSNQFSGRLPSTI 230
I L N+ L L N L+ L + +V +L S + +L S
Sbjct: 61 VQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS 118
Query: 231 GHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNT-------FGNLR 283
+ L + ++ + + L + + + + L
Sbjct: 119 LEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT 178
Query: 284 HLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDS 324
L L + N+++ L +L + L L L S
Sbjct: 179 KLQNLYLSKNHISD----------LRALAGLKNLDVLELFS 209
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 7e-04
Identities = 38/223 (17%), Positives = 72/223 (32%), Gaps = 29/223 (13%)
Query: 113 LSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHN 172
L+ ++ +N+T + + +L + L A + G+ L+NL L+L+ N
Sbjct: 18 LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73
Query: 173 NLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGH 232
+ D P + L+ I + ++ S +
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 233 SLPNIEYLTLA-------------INNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTF 279
++ +T I N + L N SKL L N S P
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191
Query: 280 GNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVL 322
+L +L + ++ N ++ +S L N L + L
Sbjct: 192 ASLPNLIEVHLKNNQISD----------VSPLANTSNLFIVTL 224
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.002
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 158 IGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNL 217
+ NLS L L N + D P + +L NL + L N +S + P + N S + ++ L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
Query: 218 HSNQ 221
+NQ
Sbjct: 225 -TNQ 227
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.002
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 4/97 (4%)
Query: 75 LNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSL 134
L + N G S S T + LSKL + +N I+ P L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191
Query: 135 FNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRH 171
+L L + N I P + N SNLF + L +
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 38.7 bits (88), Expect = 0.002
Identities = 38/337 (11%), Positives = 93/337 (27%), Gaps = 32/337 (9%)
Query: 163 NLFDLDLRHNNLQDQ----IPTEIGNLQNLESLALGTNNLSG----LIPPAIFNISTIRV 214
++ L+ + + + + + +++ + L N + + I + + +
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 215 LNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGH 274
R+ I +L + L L
Sbjct: 64 AEFSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ-----EPLIDFL 117
Query: 275 IPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPL 334
+T +L+ + + + + + N L ++ N L
Sbjct: 118 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 177
Query: 335 IGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLS 394
S + + + G P+ I +L L + + L
Sbjct: 178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----- 232
Query: 395 LEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLA------SLTSLRELRLGSNKLTSSIPS 448
+ +L L LN LS + L+ LRL N++
Sbjct: 233 -SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 291
Query: 449 SLWS-----LEYILEINLSSNSLNDSLPSNVQKLKVL 480
+L + + +L + L+ N ++ V +++ +
Sbjct: 292 TLKTVIDEKMPDLLFLELNGNRFSE-EDDVVDEIREV 327
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 37.6 bits (85), Expect = 0.004
Identities = 51/341 (14%), Positives = 95/341 (27%), Gaps = 34/341 (9%)
Query: 116 LQIMSLRNNNITG----PIPNSLFNLSKLEMLQASFNVIDGN----IPSGIGNLSNLFDL 167
++ SL+ + IT + L ++ + S N I + I + +L
Sbjct: 5 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64
Query: 168 DLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLP 227
+ L+ L L L + T + + L
Sbjct: 65 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124
Query: 228 STI--GHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFS----GHIPNTFGN 281
+ L +A + NA L + G N TF +
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184
Query: 282 LRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSAS 341
R L+ + + N + E L+ + L LG + +
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244
Query: 342 LQSFYAYECKLGGSIPKEIGN------LRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSL 395
L+ +C L + + GL L L +N++ ++ T+ + L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304
Query: 396 EDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELR 436
LELNGN+ S + + + R
Sbjct: 305 L-------------FLELNGNRFSE-EDDVVDEIREVFSTR 331
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.0 bits (84), Expect = 0.003
Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 18/187 (9%)
Query: 19 LLYLLKTTNMRLSWVGISCDSRHQRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNF 78
L +KT + + + +V L +G+ + L+ L ++ + N
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQL 74
Query: 79 YGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLS 138
P + ++ + + + + + +L L
Sbjct: 75 TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134
Query: 139 KLEMLQASFNVIDGNI--------------PSGIGNLSNLFDLDLRHNNLQDQIPTEIGN 184
+ + + G + NL+ L LD+ N + D + +
Sbjct: 135 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAK 192
Query: 185 LQNLESL 191
L NLESL
Sbjct: 193 LTNLESL 199
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 574 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.91 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.91 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.88 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.88 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.87 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.85 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.77 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.76 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.76 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.75 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.68 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.68 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.65 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.64 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.64 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.57 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.56 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.56 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.56 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.53 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.52 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.46 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.43 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.28 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.26 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.21 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.21 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.42 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.36 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.09 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.08 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.68 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.63 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=3.2e-29 Score=239.25 Aligned_cols=273 Identities=29% Similarity=0.472 Sum_probs=238.6
Q ss_pred hcccccCCCCccc--eeeeeecCC--CCcEEEEEcCCCCCcc--ccCCCccCCCCCcEEEccC-CcccccCchhhcCCCC
Q 036593 19 LLYLLKTTNMRLS--WVGISCDSR--HQRVKALNLSGMGLGG--TIPPHLGNLSFLMSLDVTL-NNFYGHLPNELGKLGR 91 (574)
Q Consensus 19 ~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~l~l~~~~~~~--~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~ 91 (574)
.+++|..+.++|. |.|+.|+.. ..+|+.|+++++++.+ .+|+.+.++++|++|+|++ |.+.+.+|..|.++++
T Consensus 23 ~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~ 102 (313)
T d1ogqa_ 23 TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102 (313)
T ss_dssp GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTT
T ss_pred cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccc
Confidence 4788998889994 999999863 3589999999999987 4789999999999999997 6788899999999999
Q ss_pred CCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCC-CEEEcc
Q 036593 92 LKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNL-FDLDLR 170 (574)
Q Consensus 92 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-~~L~l~ 170 (574)
|++|++++|++.+..+..+..+++|+++++++|.+....|..+.+++.++++++++|.+.+.+|..+..+..+ +.++++
T Consensus 103 L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~ 182 (313)
T d1ogqa_ 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp CSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred cchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccc
Confidence 9999999999998899999999999999999999988889999999999999999999988889989888776 889999
Q ss_pred CCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceec
Q 036593 171 HNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGT 250 (574)
Q Consensus 171 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 250 (574)
.|++....+..+..+..+ .+++..+......+..+..+++++.+++.++.+.+..+ .+. .+++|+.|++++|.+.+.
T Consensus 183 ~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~-~~~~L~~L~Ls~N~l~g~ 259 (313)
T d1ogqa_ 183 RNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG-LSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp SSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCC-CCTTCCEEECCSSCCEEC
T ss_pred cccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccc-cccccccccCccCeeccc
Confidence 999887778777777544 79999998888888888899999999999998875544 333 678999999999999888
Q ss_pred CCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcc
Q 036593 251 IPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNL 295 (574)
Q Consensus 251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 295 (574)
.|..+..+++|++|++++|.+++..|. +.++++|+.+++++|+.
T Consensus 260 iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred CChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence 888899999999999999999876664 57788888888888874
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=5.1e-25 Score=216.83 Aligned_cols=343 Identities=27% Similarity=0.412 Sum_probs=190.8
Q ss_pred cCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCE
Q 036593 111 GVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLES 190 (574)
Q Consensus 111 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 190 (574)
..+.+|++|+++++.+.. + +.+..+++|++|++++|.+++ ++ .++++++|++|++++|.+... ..++.+++|+.
T Consensus 41 ~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i--~~l~~l~~L~~ 114 (384)
T d2omza2 41 TDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADI--TPLANLTNLTG 114 (384)
T ss_dssp HHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred HHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccccc--ccccccccccc
Confidence 356677888888877763 2 456677777777777777763 33 377777777777777776643 23667777777
Q ss_pred EEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCc
Q 036593 191 LALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNS 270 (574)
Q Consensus 191 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 270 (574)
+++.++.+.+... ......+.......+.+... ..... ....+ .........
T Consensus 115 L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~-~~~~~--~~~~~----------------------~~~~~~~~~- 166 (384)
T d2omza2 115 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-SALSG--LTSLQ----------------------QLSFGNQVT- 166 (384)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-GGGTT--CTTCS----------------------EEEEEESCC-
T ss_pred ccccccccccccc--cccccccccccccccccccc-ccccc--ccccc----------------------ccccccccc-
Confidence 7777666553322 23334455555444433311 11000 00000 000000000
Q ss_pred eeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccc
Q 036593 271 FSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYEC 350 (574)
Q Consensus 271 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 350 (574)
....+...+.........+.... ......+++++.++++++.+++..+
T Consensus 167 ----~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~l~l~~n~i~~~~~------------------ 214 (384)
T d2omza2 167 ----DLKPLANLTTLERLDISSNKVSD----------ISVLAKLTNLESLIATNNQISDITP------------------ 214 (384)
T ss_dssp ----CCGGGTTCTTCCEEECCSSCCCC----------CGGGGGCTTCSEEECCSSCCCCCGG------------------
T ss_pred ----hhhhhcccccccccccccccccc----------ccccccccccceeeccCCccCCCCc------------------
Confidence 01112222222222222222111 1123445555666665555443211
Q ss_pred cccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCC
Q 036593 351 KLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLT 430 (574)
Q Consensus 351 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~ 430 (574)
...+++|+++++++|.+++. ..+..+++|+++++++|++++. ..+..++
T Consensus 215 ---------~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~--------------------~~~~~~~ 263 (384)
T d2omza2 215 ---------LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL--------------------APLSGLT 263 (384)
T ss_dssp ---------GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--------------------GGGTTCT
T ss_pred ---------ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCC--------------------Ccccccc
Confidence 23345566666666655432 2445566666666666655521 1245566
Q ss_pred CCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCC
Q 036593 431 SLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLA 510 (574)
Q Consensus 431 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 510 (574)
+|++|+++++++.+. ..+..++.++.+.+++|.+.+. ..+..+++++.|++++|++.+.. .+..+++|++|+++
T Consensus 264 ~L~~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~ 337 (384)
T d2omza2 264 KLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFA 337 (384)
T ss_dssp TCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECC
T ss_pred cCCEeeccCcccCCC--Cccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECC
Confidence 777777777766532 2355667777777777776542 33566777777777777776432 36677778888888
Q ss_pred CCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCC
Q 036593 511 SNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQN 560 (574)
Q Consensus 511 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n 560 (574)
+|++++ ++ .+..+++|+.|++++|++++..| +.++++|+.|++++|
T Consensus 338 ~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 338 NNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp SSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 777763 32 56777778888888777775433 677778888888776
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=7.1e-25 Score=215.81 Aligned_cols=356 Identities=24% Similarity=0.309 Sum_probs=215.6
Q ss_pred EccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCc
Q 036593 72 DVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVID 151 (574)
Q Consensus 72 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 151 (574)
.++...+.+.+. .+.+.+|++|+++++.+++. +.+..+++|++|++++|.+++. + .+.++++|++|++++|.+.
T Consensus 28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~ 101 (384)
T d2omza2 28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA 101 (384)
T ss_dssp HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccc
Confidence 444445444332 45677899999999999853 4688999999999999999844 3 3889999999999999997
Q ss_pred ccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhh
Q 036593 152 GNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIG 231 (574)
Q Consensus 152 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 231 (574)
+ ++ .++++++|+.|+++++.+... ........+.......+.+........................ ..+.
T Consensus 102 ~-i~-~l~~l~~L~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 172 (384)
T d2omza2 102 D-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-----KPLA 172 (384)
T ss_dssp C-CG-GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-----GGGT
T ss_pred c-cc-ccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccchh-----hhhc
Confidence 4 33 489999999999999887644 3345566777777766665433222211111111111111111 1110
Q ss_pred cCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccc
Q 036593 232 HSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSL 311 (574)
Q Consensus 232 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 311 (574)
........... .+... ....+..+++++.+++++|.+.... ..
T Consensus 173 -~~~~~~~~~~~------------------------~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~----------~~ 215 (384)
T d2omza2 173 -NLTTLERLDIS------------------------SNKVS--DISVLAKLTNLESLIATNNQISDIT----------PL 215 (384)
T ss_dssp -TCTTCCEEECC------------------------SSCCC--CCGGGGGCTTCSEEECCSSCCCCCG----------GG
T ss_pred -ccccccccccc------------------------ccccc--cccccccccccceeeccCCccCCCC----------cc
Confidence 11222222222 12111 1222344455555555555444321 12
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCC
Q 036593 312 TNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQ 391 (574)
Q Consensus 312 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 391 (574)
..+++|++|++++|.+++. ..+..+++|+.+++++|.+++.. .+..+++|+
T Consensus 216 ~~~~~L~~L~l~~n~l~~~---------------------------~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~ 266 (384)
T d2omza2 216 GILTNLDELSLNGNQLKDI---------------------------GTLASLTNLTDLDLANNQISNLA--PLSGLTKLT 266 (384)
T ss_dssp GGCTTCCEEECCSSCCCCC---------------------------GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCS
T ss_pred cccCCCCEEECCCCCCCCc---------------------------chhhcccccchhccccCccCCCC--cccccccCC
Confidence 3345555666655544421 12345566666666666665432 355666777
Q ss_pred eEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCC
Q 036593 392 GLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLP 471 (574)
Q Consensus 392 ~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 471 (574)
+|+++++++++. ..+..++.++.+.++.|.+.+ ...+..++++++|++++|.+.+..
T Consensus 267 ~L~l~~~~l~~~--------------------~~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~- 323 (384)
T d2omza2 267 ELKLGANQISNI--------------------SPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS- 323 (384)
T ss_dssp EEECCSSCCCCC--------------------GGGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG-
T ss_pred EeeccCcccCCC--------------------Ccccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc-
Confidence 777766665521 124556677777777777653 234666777777777777776542
Q ss_pred ccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCC
Q 036593 472 SNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 536 (574)
Q Consensus 472 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 536 (574)
.+..+++|++|++++|+++. + ..++++++|++|++++|++++.. .+.++++|+.|+|++|
T Consensus 324 -~l~~l~~L~~L~L~~n~l~~-l-~~l~~l~~L~~L~l~~N~l~~l~--~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 324 -PVSSLTKLQRLFFANNKVSD-V-SSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQ 383 (384)
T ss_dssp -GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCCE
T ss_pred -ccccCCCCCEEECCCCCCCC-C-hhHcCCCCCCEEECCCCcCCCCh--hhccCCCCCEeeCCCC
Confidence 26677788888888887764 2 24777788888888888777543 2677778888888776
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=6.7e-23 Score=194.32 Aligned_cols=242 Identities=24% Similarity=0.325 Sum_probs=116.9
Q ss_pred CcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEcc
Q 036593 212 IRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIR 291 (574)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 291 (574)
.+.++.++..++ .+|..+. +++++|++++|.++...+.+|..+++|++|++++|.+....+..|.++++|+.|+++
T Consensus 12 ~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 12 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 344555555555 5555432 456666666666655544556666666666666666665555566666666666666
Q ss_pred CCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEEC
Q 036593 292 TNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTL 371 (574)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l 371 (574)
+|+++..+.. ..+.++.|+..++.+..... ..+.....+..++.
T Consensus 88 ~n~l~~l~~~-----------~~~~l~~L~~~~n~l~~l~~-------------------------~~~~~~~~~~~l~~ 131 (305)
T d1xkua_ 88 KNQLKELPEK-----------MPKTLQELRVHENEITKVRK-------------------------SVFNGLNQMIVVEL 131 (305)
T ss_dssp SSCCSBCCSS-----------CCTTCCEEECCSSCCCBBCH-------------------------HHHTTCTTCCEEEC
T ss_pred CCccCcCccc-----------hhhhhhhhhccccchhhhhh-------------------------hhhhcccccccccc
Confidence 6665544211 12344555555444432211 11223334444444
Q ss_pred cCCCCc--ccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCcc
Q 036593 372 DFNDLN--GTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSS 449 (574)
Q Consensus 372 ~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 449 (574)
..+... ......+..+++|+.+.+.+|++. .++.. .+++|+.|++++|......+..
T Consensus 132 ~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-------------------~l~~~--~~~~L~~L~l~~n~~~~~~~~~ 190 (305)
T d1xkua_ 132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-------------------TIPQG--LPPSLTELHLDGNKITKVDAAS 190 (305)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-------------------SCCSS--CCTTCSEEECTTSCCCEECTGG
T ss_pred ccccccccCCCccccccccccCccccccCCcc-------------------ccCcc--cCCccCEEECCCCcCCCCChhH
Confidence 443221 122233444444555544444443 11111 1344555555555444444444
Q ss_pred ccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCccc
Q 036593 450 LWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQ 515 (574)
Q Consensus 450 ~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 515 (574)
+..++.+++|++++|.+.+..+..+.++++|++|++++|.++ .++..+..+++|++|++++|+++
T Consensus 191 ~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 255 (305)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred hhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence 444445555555555444444444444455555555555444 22334444455555555555444
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.91 E-value=3.4e-24 Score=204.09 Aligned_cols=249 Identities=28% Similarity=0.451 Sum_probs=184.3
Q ss_pred CCCcEEEccCCCCCCC--CChhhhhhccccceEEecc-ccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCC
Q 036593 315 RKLSYLVLDSNPLGGI--LPPLIGNFSASLQSFYAYE-CKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQ 391 (574)
Q Consensus 315 ~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 391 (574)
.+++.|+++++.+... .|..++.+. +|++|++++ +.+.+.+|..+.++++|++|++++|.+.+..+..+..+++|+
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~ 128 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCc-cccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence 4688899999888763 456676665 888888886 567767888888888888888888888887777788888888
Q ss_pred eEeccCCcccccCCC------CCceEEccCCeeeecCCccCcCCCCC-CeEECCCCeecccCCccccCCCCCCeEeCCCC
Q 036593 392 GLSLEDNNLEGSIPY------DLCHLELNGNKLSGHIPPCLASLTSL-RELRLGSNKLTSSIPSSLWSLEYILEINLSSN 464 (574)
Q Consensus 392 ~L~l~~~~~~~~~~~------~l~~l~l~~~~l~~~~~~~~~~~~~L-~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~ 464 (574)
+++++.|.+.+.+|. .++.+++++|.+++.+|..+..+..+ +.+++++|++++..+..+..+.. ..++++.+
T Consensus 129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~ 207 (313)
T d1ogqa_ 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSS
T ss_pred ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 888888887766653 45577777777777777776666665 77777777777666666655543 36777777
Q ss_pred cceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCc
Q 036593 465 SLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPK 544 (574)
Q Consensus 465 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 544 (574)
...+..+..+..+++++.+++++|.+.... ..+..+++|+.|++++|++++.+|..+.++++|+.|+|++|++++.+|+
T Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 286 (313)
T d1ogqa_ 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence 777777777777777888888877776443 3466677788888888887777777777777888888888877766664
Q ss_pred CcccCCCCCeEeccCCc-cccc-cC
Q 036593 545 SLEALSHLKQFNVSQNM-LEGE-IP 567 (574)
Q Consensus 545 ~l~~l~~L~~l~l~~n~-~~~~-~p 567 (574)
+.++++|+.+++++|+ +.|. +|
T Consensus 287 -~~~L~~L~~l~l~~N~~l~g~plp 310 (313)
T d1ogqa_ 287 -GGNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp -STTGGGSCGGGTCSSSEEESTTSS
T ss_pred -cccCCCCCHHHhCCCccccCCCCC
Confidence 4667777777787777 3443 44
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=2e-22 Score=190.94 Aligned_cols=271 Identities=21% Similarity=0.271 Sum_probs=217.4
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNN 124 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 124 (574)
+.++.++.+++ .+|..+. +++++|+|++|.+.+..+.+|.++++|++|++++|++....|.+|.++++|++|++++|
T Consensus 13 ~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n 89 (305)
T d1xkua_ 13 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89 (305)
T ss_dssp TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence 45677778887 4666664 68999999999997666668999999999999999999888999999999999999999
Q ss_pred cccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCC--cCCCccccCCCCCCEEEccCCcccccC
Q 036593 125 NITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQ--DQIPTEIGNLQNLESLALGTNNLSGLI 202 (574)
Q Consensus 125 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~ 202 (574)
++. .+|.. ....++.|.+..+.+.+..+..+.....++.++...+... ......+..+++|+.+++++|.+...
T Consensus 90 ~l~-~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l- 165 (305)
T d1xkua_ 90 QLK-ELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI- 165 (305)
T ss_dssp CCS-BCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-
T ss_pred ccC-cCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc-
Confidence 988 45543 3468899999999888666666788888999998876433 33456788889999999999988643
Q ss_pred chhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCccCC
Q 036593 203 PPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNL 282 (574)
Q Consensus 203 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 282 (574)
+.. .+++|++|++++|......+..+. .++.++.|++++|.+....+.++..+++|++|++++|.++. .|.++..+
T Consensus 166 ~~~--~~~~L~~L~l~~n~~~~~~~~~~~-~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l 241 (305)
T d1xkua_ 166 PQG--LPPSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADH 241 (305)
T ss_dssp CSS--CCTTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTC
T ss_pred Ccc--cCCccCEEECCCCcCCCCChhHhh-ccccccccccccccccccccccccccccceeeecccccccc-cccccccc
Confidence 332 357899999999988856555544 78899999999999988888889999999999999999874 56788999
Q ss_pred CcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCC
Q 036593 283 RHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLG 328 (574)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 328 (574)
++|+.|++++|+++..+..... ....+....+|+.|++++|++.
T Consensus 242 ~~L~~L~Ls~N~i~~i~~~~f~--~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 242 KYIQVVYLHNNNISAIGSNDFC--PPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp SSCCEEECCSSCCCCCCTTSSS--CSSCCTTSCCCSEEECCSSSSC
T ss_pred cCCCEEECCCCccCccChhhcc--CcchhcccCCCCEEECCCCcCc
Confidence 9999999999998876543311 1233556778899999988765
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.2e-21 Score=183.26 Aligned_cols=204 Identities=24% Similarity=0.233 Sum_probs=120.7
Q ss_pred ceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCC-cccccCCCCCceEEccCCeeeec
Q 036593 343 QSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDN-NLEGSIPYDLCHLELNGNKLSGH 421 (574)
Q Consensus 343 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~l~l~~~~l~~~ 421 (574)
++|+++++++....+..|..+++|+++++++|.+.......+..++.++++....+ .++. .
T Consensus 35 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~------------------l 96 (284)
T d1ozna_ 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS------------------V 96 (284)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC------------------C
T ss_pred CEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccc------------------c
Confidence 33333333333333344556666666666666666555555555556665554322 2221 2
Q ss_pred CCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCC
Q 036593 422 IPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGAL 501 (574)
Q Consensus 422 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 501 (574)
.+..+.++++|++|++++|.+.......+..+.+|+.+++++|.+....+..|..+++|+.|++++|++....+..|.++
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l 176 (284)
T d1ozna_ 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176 (284)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred cchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccc
Confidence 33455666666666666666654455555556666666666666665555556666666666666666665555666666
Q ss_pred CCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCcccc
Q 036593 502 VDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEG 564 (574)
Q Consensus 502 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~ 564 (574)
++|+++++++|++++..|..|..+++|+.|++++|.+....+..|..+++|+.|++++|++..
T Consensus 177 ~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence 666666666666666666666666666666666666665555556666666666666666554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=5.2e-22 Score=185.78 Aligned_cols=239 Identities=24% Similarity=0.236 Sum_probs=174.5
Q ss_pred CCccEEeCCCCceeecCCCCccCCCcCceEEccCCcccccCCCCccccccccccCCCCCcEEEccCCCCCCCCChhhhhh
Q 036593 259 SKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSIRTNNLTTESSSADQWSFLSSLTNCRKLSYLVLDSNPLGGILPPLIGNF 338 (574)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 338 (574)
+.+++|+|++|.++...+..|.++++|+.++++++.+....... +..+..++.+.+....
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~--------~~~~~~~~~l~~~~~~------------ 91 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA--------FTGLALLEQLDLSDNA------------ 91 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT--------TTTCTTCCEEECCSCT------------
T ss_pred CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccc--------cccccccccccccccc------------
Confidence 45677777777777666666777777777777777666553322 4455555555554321
Q ss_pred ccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCee
Q 036593 339 SASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKL 418 (574)
Q Consensus 339 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l 418 (574)
.+....+..+.++++|++|+++.|.+.......+...++|+.+++++|+++.
T Consensus 92 ------------~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~---------------- 143 (284)
T d1ozna_ 92 ------------QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA---------------- 143 (284)
T ss_dssp ------------TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC----------------
T ss_pred ------------ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccc----------------
Confidence 1222334567788888888888888876667777778888888888888763
Q ss_pred eecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccc
Q 036593 419 SGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTI 498 (574)
Q Consensus 419 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 498 (574)
..+..|..+++|++|++++|++.+..+.+|..+++|+++++++|.+.+..+..|..+++|++|++++|.+....+..|
T Consensus 144 --i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~ 221 (284)
T d1ozna_ 144 --LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221 (284)
T ss_dssp --CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred --cChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccc
Confidence 334567788899999999999987778888899999999999999988888889999999999999999987777888
Q ss_pred cCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCccc
Q 036593 499 GALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEA 548 (574)
Q Consensus 499 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~ 548 (574)
+.+++|++|++++|.+...-+ ...-...++.+....+++....|..+..
T Consensus 222 ~~~~~L~~L~l~~N~l~C~C~-~~~l~~~l~~~~~~~~~~~C~~p~~l~g 270 (284)
T d1ozna_ 222 APLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAG 270 (284)
T ss_dssp TTCTTCCEEECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred ccccccCEEEecCCCCCCCcc-chHHHHHHHhCcCCCCceEeCCchHHcC
Confidence 899999999999998875321 1111124566666777777666665543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.5e-21 Score=177.97 Aligned_cols=201 Identities=25% Similarity=0.218 Sum_probs=101.0
Q ss_pred CCCCCcEEEccCCCCCCCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcCccccCCCCe
Q 036593 313 NCRKLSYLVLDSNPLGGILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQG 392 (574)
Q Consensus 313 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 392 (574)
....+.+++.+++.++.+.+ . .+++++.|+++++.+....+..|.++++|++|++++|.++... .++.+++|++
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~-~---lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~ 81 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPP-D---LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGT 81 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCS-C---CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCE
T ss_pred ccCCCeEEEccCCCCCeeCc-C---cCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccccc
Confidence 34556667777777664321 1 1224445555555444333344444555555555554444221 2233444444
Q ss_pred EeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCc
Q 036593 393 LSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPS 472 (574)
Q Consensus 393 L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 472 (574)
|++++|+++ ..+..+..+++|+.|++++|.+.+.....+..+.++++|++++|.+....+.
T Consensus 82 L~Ls~N~l~-------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~ 142 (266)
T d1p9ag_ 82 LDLSHNQLQ-------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142 (266)
T ss_dssp EECCSSCCS-------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred ccccccccc-------------------ccccccccccccccccccccccceeeccccccccccccccccccccceeccc
Confidence 444444443 2233444555555555555555544444455555555555555555544444
Q ss_pred cccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 473 NVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 473 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
.+..+++|+.+++++|+++...+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.
T Consensus 143 ~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 4455555555555555555444444555555555555555555 44444445555555555555544
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=3.7e-20 Score=170.99 Aligned_cols=197 Identities=23% Similarity=0.263 Sum_probs=159.0
Q ss_pred CcEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEc
Q 036593 42 QRVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSL 121 (574)
Q Consensus 42 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 121 (574)
....++++++++++. +|+.+. +++++|+|++|.+.+..+.+|.++++|++|++++|+++.. + .++.+++|++|++
T Consensus 10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~L 84 (266)
T d1p9ag_ 10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDL 84 (266)
T ss_dssp TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEEC
T ss_pred CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccc
Confidence 344567999999984 676564 5899999999999876667899999999999999998743 3 3678999999999
Q ss_pred cCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCccccc
Q 036593 122 RNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGL 201 (574)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 201 (574)
++|.+. ..+..+..+++|+.|+++++.+....+..+..+.++++|++++|.+....+..+..+++|+.+++++|.+...
T Consensus 85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~ 163 (266)
T d1p9ag_ 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (266)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred cccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence 999987 5677788899999999999888766667778888999999999888877777788888899999988888877
Q ss_pred CchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeeccccc
Q 036593 202 IPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINN 246 (574)
Q Consensus 202 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 246 (574)
.+..|..+++|++|++++|.+. .+|..++ .++.|+.|++++|.
T Consensus 164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~-~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNP 206 (266)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCC
T ss_pred CccccccccccceeecccCCCc-ccChhHC-CCCCCCEEEecCCC
Confidence 7777888888888888888877 6776665 45566666666554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.7e-21 Score=196.28 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCCccc-cCCCccCCCCCcEEEccCCcccc----cCchhhcCCCCCCEEEccCCcCc
Q 036593 43 RVKALNLSGMGLGGT-IPPHLGNLSFLMSLDVTLNNFYG----HLPNELGKLGRLKFISFSFNKLS 103 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~ 103 (574)
++++||++++.+++. +.+.+..++++++|+|++|.++. .+..++..+++|++|++++|+++
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~ 68 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence 456666666666542 23334455666666666665542 22344556666666666666554
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.76 E-value=2.2e-15 Score=145.22 Aligned_cols=96 Identities=22% Similarity=0.289 Sum_probs=58.7
Q ss_pred CCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEc
Q 036593 90 GRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDL 169 (574)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 169 (574)
.++++|+++++.++ .+|+. .++|++|++++|.++ .+|.. ..+|+.|+++++.+. .++. + .+.|++|++
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L 105 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV 105 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence 36788888888877 45643 467888888888777 45543 346777777777665 2222 1 134666776
Q ss_pred cCCcCCcCCCccccCCCCCCEEEccCCccc
Q 036593 170 RHNNLQDQIPTEIGNLQNLESLALGTNNLS 199 (574)
Q Consensus 170 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 199 (574)
++|.+... + .+..+++|+.++++++.+.
T Consensus 106 ~~n~l~~l-p-~~~~l~~L~~L~l~~~~~~ 133 (353)
T d1jl5a_ 106 SNNQLEKL-P-ELQNSSFLKIIDVDNNSLK 133 (353)
T ss_dssp CSSCCSSC-C-CCTTCTTCCEEECCSSCCS
T ss_pred cccccccc-c-chhhhccceeecccccccc
Confidence 66666532 2 2455666666666655543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.7e-21 Score=196.11 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=66.5
Q ss_pred CCCceeecccccCcccC-chhccCCCCCCEEEccCCcCCcC----CCccccCCCCCCEEEccCCcccccCchhhc-----
Q 036593 138 SKLEMLQASFNVIDGNI-PSGIGNLSNLFDLDLRHNNLQDQ----IPTEIGNLQNLESLALGTNNLSGLIPPAIF----- 207 (574)
Q Consensus 138 ~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~----- 207 (574)
.+|+.|+++.+.+++.. ...+..++++++|++.+|.+++. .+..+..+++|++|++++|.+.+.....+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 35788888888876422 23345677888888888877643 234456778888888888877543222221
Q ss_pred ccCCCcEEEcccCcccccCCchh---hcCCCCcCeeecccccce
Q 036593 208 NISTIRVLNLHSNQFSGRLPSTI---GHSLPNIEYLTLAINNLI 248 (574)
Q Consensus 208 ~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~ 248 (574)
...+|++|++++|.+++.....+ ...+++|++|++++|.+.
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence 22467777777777653322211 124556666666665544
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.75 E-value=7e-16 Score=148.75 Aligned_cols=136 Identities=25% Similarity=0.352 Sum_probs=68.2
Q ss_pred cEEEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEcc
Q 036593 43 RVKALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLR 122 (574)
Q Consensus 43 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (574)
++++|++++++++ .+|+. .++|++|++++|.+. .+|.. ..+|+.|++.+|+++. +++. .+.|++|+++
T Consensus 39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~ 106 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVS 106 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECC
T ss_pred CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhhh---cccccccccc
Confidence 4556777777766 34542 356677777766664 34432 3456666666666552 2211 1346666666
Q ss_pred CCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcc
Q 036593 123 NNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNL 198 (574)
Q Consensus 123 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 198 (574)
+|.+. ..|. +..+++|++++++++.+. ..+. ....+..+.+..+... ....+..++.++.+.+..+..
T Consensus 107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~-~~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~ 174 (353)
T d1jl5a_ 107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSL 174 (353)
T ss_dssp SSCCS-SCCC-CTTCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCC
T ss_pred ccccc-cccc-hhhhccceeecccccccc-cccc---ccccccchhhcccccc--ccccccccccceecccccccc
Confidence 66655 3332 345566666666555543 1111 2234445554443322 122344444555555544433
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=1.6e-16 Score=142.65 Aligned_cols=169 Identities=25% Similarity=0.331 Sum_probs=129.7
Q ss_pred cccCCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECC
Q 036593 359 EIGNLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLG 438 (574)
Q Consensus 359 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~ 438 (574)
.+.++++|+++++++|.+.+.. .+..+++++++.+++|.++. + ..+..+++|+.++++
T Consensus 58 ~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-------------------i-~~l~~l~~L~~l~l~ 115 (227)
T d1h6ua2 58 GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-------------------V-SAIAGLQSIKTLDLT 115 (227)
T ss_dssp TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-------------------C-GGGTTCTTCCEEECT
T ss_pred hHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-------------------c-ccccccccccccccc
Confidence 3667888888888888876543 36778888888888877662 2 236678899999999
Q ss_pred CCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccC
Q 036593 439 SNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPI 518 (574)
Q Consensus 439 ~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 518 (574)
++...+ ...+...+.++.+.++++.+... ..+..+++|+.|++++|.+... ..++++++|++|++++|++++.
T Consensus 116 ~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l- 188 (227)
T d1h6ua2 116 STQITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI- 188 (227)
T ss_dssp TSCCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-
T ss_pred cccccc--cchhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccCCC-
Confidence 887753 34456678889999988887543 3367788999999999988743 3478899999999999988743
Q ss_pred CccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccC
Q 036593 519 PESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQ 559 (574)
Q Consensus 519 ~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~ 559 (574)
..+.++++|+.|++++|+++... .+.++++|+.|++++
T Consensus 189 -~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 189 -SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226 (227)
T ss_dssp -GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred -hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence 34788899999999999988543 378899999999863
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=2.4e-16 Score=141.43 Aligned_cols=188 Identities=24% Similarity=0.338 Sum_probs=87.2
Q ss_pred hcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccCCCCCC
Q 036593 86 LGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGNLSNLF 165 (574)
Q Consensus 86 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 165 (574)
++.+.+|+.|++.+|.+++. ..++++++|++|++++|.+.+.. .+..++++++++++++.++ .+ .++.++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i-~~l~~l~~L~ 110 (227)
T d1h6ua2 37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NV-SAIAGLQSIK 110 (227)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CC-GGGTTCTTCC
T ss_pred HHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-cc-cccccccccc
Confidence 34445555555555555432 23555555555555555554221 2455555555555555544 22 2355566666
Q ss_pred EEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccc
Q 036593 166 DLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAIN 245 (574)
Q Consensus 166 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 245 (574)
+++++.+.... ...+...+.++.+.++.+.+... ..+..+++|++|++++|.+.+ .+ .+ ..+++|++|++++|
T Consensus 111 ~l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~-~~-~l-~~l~~L~~L~Ls~n 183 (227)
T d1h6ua2 111 TLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD-LT-PL-ANLSKLTTLKADDN 183 (227)
T ss_dssp EEECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC-CG-GG-TTCTTCCEEECCSS
T ss_pred ccccccccccc--cchhccccchhhhhchhhhhchh--hhhcccccccccccccccccc-ch-hh-cccccceecccCCC
Confidence 66665554432 23344555556666655554322 224455556666665554431 11 11 13444444444444
Q ss_pred cceecCCcCccCCCCccEEeCCCCceeecCCCCccCCCcCceEEc
Q 036593 246 NLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFGNLRHLNVLSI 290 (574)
Q Consensus 246 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 290 (574)
.+.+. ..+..+++|++|++++|++++.. .+.++++|+.|++
T Consensus 184 ~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~l 224 (227)
T d1h6ua2 184 KISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTL 224 (227)
T ss_dssp CCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEE
T ss_pred ccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEe
Confidence 33321 12334444444444444444221 1444444444444
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2e-16 Score=143.69 Aligned_cols=206 Identities=16% Similarity=0.124 Sum_probs=138.8
Q ss_pred ccceEEeccccccccCCccccCCCCCcEEECcCCCCccc-CCcCccccCCCCeEeccC-CcccccCCCCCceEEccCCee
Q 036593 341 SLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGT-IPTSVGTLQQLQGLSLED-NNLEGSIPYDLCHLELNGNKL 418 (574)
Q Consensus 341 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~l~~~~l 418 (574)
++++|+++++.+....+..|.++++|++|++++|.+... ...+|..++.++++.+.. +++.
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~----------------- 92 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL----------------- 92 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-----------------
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-----------------
Confidence 455555555555544445677778888888887776543 345677777777777654 3333
Q ss_pred eecCCccCcCCCCCCeEECCCCeecccCCc-cccCCCCCCeEeCCCCcceecCCccccCCC-CCCEEeCCCCcccccCcc
Q 036593 419 SGHIPPCLASLTSLRELRLGSNKLTSSIPS-SLWSLEYILEINLSSNSLNDSLPSNVQKLK-VLRVLDLSRNQLSGNIPS 496 (574)
Q Consensus 419 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~ 496 (574)
...+..|..+++|+++++++|.+....+. .+..+..+..+...++.+....+..+..++ .++.|++++|++......
T Consensus 93 -~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~ 171 (242)
T d1xwdc1 93 -YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNC 171 (242)
T ss_dssp -EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT
T ss_pred -ccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccc
Confidence 24456678888999999999888643222 233345555556677777766666666654 788899999988865555
Q ss_pred cccCCCCCCEe-eCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCC
Q 036593 497 TIGALVDLETL-SLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 497 ~~~~~~~L~~L-~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
.+ ..++++++ .+++|+++...+..|.++++|+.|++++|++....+..|.+++.|+.+++.+. +.+|+
T Consensus 172 ~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l---~~lp~ 240 (242)
T d1xwdc1 172 AF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT 240 (242)
T ss_dssp TT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS---SCSCC
T ss_pred cc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC---CcCCC
Confidence 44 34555555 56777888555567889999999999999998665666777777777766553 46664
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.8e-16 Score=144.01 Aligned_cols=218 Identities=21% Similarity=0.155 Sum_probs=127.0
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCcc-CCCccccCCCCCCEEEccC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSG-SIPTWIGVLSKLQIMSLRN 123 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~ 123 (574)
+++++++.+++ .+|+.+. +++++|++++|.+...-+.+|.++++|++|++++|.+.. ..+.+|..+++++++.+..
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 36777777777 4665443 578899999988876555678889999999998887764 3455688888888888764
Q ss_pred -CcccccCCcCCCCCCCCceeecccccCcccCch-hccCCCCCCEEEccCCcCCcCCCccccCCC-CCCEEEccCCcccc
Q 036593 124 -NNITGPIPNSLFNLSKLEMLQASFNVIDGNIPS-GIGNLSNLFDLDLRHNNLQDQIPTEIGNLQ-NLESLALGTNNLSG 200 (574)
Q Consensus 124 -~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~ 200 (574)
+.+....+..+.++++|++++++++.+....+. .+..+..++.+...++.+.......+.+++ .++.+++.+|++..
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~ 167 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 167 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence 445545556677777777777777766522111 122333444444445455444444444442 45555665555543
Q ss_pred cCchhhcccCCCcEEEcccCcccccCCchhhcCCCCcCeeecccccceecCCcCccCCCCccEEeCCCCceeecCCCCcc
Q 036593 201 LIPPAIFNISTIRVLNLHSNQFSGRLPSTIGHSLPNIEYLTLAINNLIGTIPDSLTNASKLIGLDLGSNSFSGHIPNTFG 280 (574)
Q Consensus 201 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 280 (574)
..+..+ ..++++++. .+.++.++......|.++++|++|++++|+++...+..|.
T Consensus 168 i~~~~~-~~~~l~~~~------------------------~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~ 222 (242)
T d1xwdc1 168 IHNCAF-NGTQLDELN------------------------LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 222 (242)
T ss_dssp ECTTTT-TTCCEEEEE------------------------CTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred cccccc-cchhhhccc------------------------cccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHc
Confidence 333222 223333332 2233333333333455556666666666666544444555
Q ss_pred CCCcCceEEc
Q 036593 281 NLRHLNVLSI 290 (574)
Q Consensus 281 ~l~~L~~L~l 290 (574)
++++|+.+++
T Consensus 223 ~l~~L~~l~~ 232 (242)
T d1xwdc1 223 NLKKLRARST 232 (242)
T ss_dssp TCCEEESSSE
T ss_pred CCcccccCcC
Confidence 5555555544
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=4.3e-16 Score=137.50 Aligned_cols=166 Identities=27% Similarity=0.368 Sum_probs=128.9
Q ss_pred CCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCe
Q 036593 362 NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNK 441 (574)
Q Consensus 362 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 441 (574)
.+.+|+++++++|.+.+.. .+..+++|++|++++|++++ ++ .+..+++|+.|++++|+
T Consensus 44 ~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-------------------l~-~~~~l~~L~~L~l~~n~ 101 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-------------------IK-PLANLKNLGWLFLDENK 101 (210)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-------------------CG-GGTTCTTCCEEECCSSC
T ss_pred HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-------------------cc-ccccCcccccccccccc
Confidence 4567888888888877542 46778888888888888773 22 24678889999999998
Q ss_pred ecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCcc
Q 036593 442 LTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPES 521 (574)
Q Consensus 442 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 521 (574)
+++ ++ .+..+++|+.|++++|.+... ..+..++.++.+++++|.+.+ ...+..+++|+.+++++|++.+. ..
T Consensus 102 i~~-l~-~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i--~~ 173 (210)
T d1h6ta2 102 VKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI--VP 173 (210)
T ss_dssp CCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GG
T ss_pred ccc-cc-ccccccccccccccccccccc--ccccccccccccccccccccc--ccccccccccccccccccccccc--cc
Confidence 864 33 577888999999999887543 457788999999999998874 33467789999999999988743 24
Q ss_pred ccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccC
Q 036593 522 VGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQ 559 (574)
Q Consensus 522 l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~ 559 (574)
+.++++|++|++++|+++.. ..|..+++|+.|++++
T Consensus 174 l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 174 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS 209 (210)
T ss_dssp GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEE
T ss_pred ccCCCCCCEEECCCCCCCCC--hhhcCCCCCCEEEccC
Confidence 78889999999999998743 3588899999999864
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=7.5e-16 Score=134.74 Aligned_cols=162 Identities=28% Similarity=0.421 Sum_probs=117.1
Q ss_pred CCCCCcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCe
Q 036593 362 NLRGLILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNK 441 (574)
Q Consensus 362 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 441 (574)
.++++++|+++++.+... ..++.+++|++|++++|++++ ++ .+..+++|+.|++++|.
T Consensus 38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~-------------------~~-~l~~l~~L~~L~l~~n~ 95 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-------------------IT-PLKNLTKLVDILMNNNQ 95 (199)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-------------------CG-GGTTCTTCCEEECCSSC
T ss_pred HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccC-------------------cc-cccCCcccccccccccc
Confidence 456777888888777643 346677888888888877762 22 26678888888888887
Q ss_pred ecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCcc
Q 036593 442 LTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPES 521 (574)
Q Consensus 442 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 521 (574)
+... ..+..+++|+.|+++++..... ..+..+++|+.|++++|++.. . ..+.++++|++|++.+|++++. ..
T Consensus 96 ~~~~--~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~ 167 (199)
T d2omxa2 96 IADI--TPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KP 167 (199)
T ss_dssp CCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GG
T ss_pred cccc--cccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--cc
Confidence 7532 2467788888888888877543 346778888888888888763 2 3477788888888888888743 34
Q ss_pred ccCCcCCCeeeCCCCcccccCCcCcccCCCCCeE
Q 036593 522 VGSLISLESLDLSGNNFSGKIPKSLEALSHLKQF 555 (574)
Q Consensus 522 l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l 555 (574)
+.++++|+.|++++|++++. +.+..+++|++|
T Consensus 168 l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L 199 (199)
T d2omxa2 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESL 199 (199)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred ccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence 77888888888888888753 347778888765
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=2.1e-15 Score=131.80 Aligned_cols=148 Identities=29% Similarity=0.414 Sum_probs=78.2
Q ss_pred CCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCcee
Q 036593 64 NLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEML 143 (574)
Q Consensus 64 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 143 (574)
+++++++|+++++.+.. + ..++.+++|++|++++|++++..+ ++++++|++|++++|.+. ..+ .+.+++.|+.|
T Consensus 38 ~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L 111 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGL 111 (199)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEE
T ss_pred HhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccccccccccc
Confidence 34555666666655543 1 235556666666666665553322 555666666666665554 222 24555566666
Q ss_pred ecccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCccc
Q 036593 144 QASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFS 223 (574)
Q Consensus 144 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (574)
+++++.... ...+.++++|+.|++++|.+... ..+..+++|+.|++.+|.+.+. ..+.++++|++|++++|+++
T Consensus 112 ~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 112 TLFNNQITD--IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS 185 (199)
T ss_dssp ECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ccccccccc--ccccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC
Confidence 665555432 12355556666666666555422 3455556666666665555432 22455555555555555554
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.65 E-value=3e-16 Score=136.42 Aligned_cols=174 Identities=22% Similarity=0.243 Sum_probs=131.3
Q ss_pred CcEEECcCCCCcccCCcCccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeeccc
Q 036593 366 LILLTLDFNDLNGTIPTSVGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS 445 (574)
Q Consensus 366 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 445 (574)
.+.+++++++++.+ |..+ .+++++|+|++|+++.. ..+..|..+++|++|++++|.+...
T Consensus 10 ~~~v~Cs~~~L~~i-P~~l--p~~l~~L~Ls~N~i~~~-----------------~~~~~f~~l~~L~~L~L~~N~i~~~ 69 (192)
T d1w8aa_ 10 GTTVDCTGRGLKEI-PRDI--PLHTTELLLNDNELGRI-----------------SSDGLFGRLPHLVKLELKRNQLTGI 69 (192)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSCCCCSB-----------------CCSCSGGGCTTCCEEECCSSCCCCB
T ss_pred CCEEEEeCCCcCcc-CCCC--CCCCCEEEeCCCCCccc-----------------ccccccCCCceEeeeeccccccccc
Confidence 35677777777633 3322 24566666666666532 2345678899999999999999888
Q ss_pred CCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCC
Q 036593 446 IPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSL 525 (574)
Q Consensus 446 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~ 525 (574)
.+..+..+++|++|++++|++....+..|.++++|++|+|++|+++.+.+++|.++++|++|+|++|.+.... ....-.
T Consensus 70 ~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~-~~~~~~ 148 (192)
T d1w8aa_ 70 EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC-HLAWFA 148 (192)
T ss_dssp CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG-GGHHHH
T ss_pred cccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc-chHHHh
Confidence 8889999999999999999999888888999999999999999999888888999999999999999887432 221112
Q ss_pred cCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccc
Q 036593 526 ISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLE 563 (574)
Q Consensus 526 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~ 563 (574)
..++.+.+..+.+....|..+ ..++.++++.|++.
T Consensus 149 ~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~ 183 (192)
T d1w8aa_ 149 EWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFK 183 (192)
T ss_dssp HHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCC
T ss_pred hhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCc
Confidence 346677788888876666544 45666778777764
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.64 E-value=1.4e-15 Score=134.15 Aligned_cols=164 Identities=25% Similarity=0.337 Sum_probs=81.5
Q ss_pred CCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceee
Q 036593 65 LSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQ 144 (574)
Q Consensus 65 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 144 (574)
+.+|+.|++++|.+.+. ..++.+++|++|++++|++++.. .++.+++|++|++++|.+.+ ++ .+..+++|+.|+
T Consensus 45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (210)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence 34555555555555432 12555555666666555555322 24555555666655555542 22 345555555555
Q ss_pred cccccCcccCchhccCCCCCCEEEccCCcCCcCCCccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCcccc
Q 036593 145 ASFNVIDGNIPSGIGNLSNLFDLDLRHNNLQDQIPTEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSG 224 (574)
Q Consensus 145 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 224 (574)
++++.+. .+ ..+.+++.++.++++.+.+.. ...+..+++|+.+++++|.+.+. ..+.++++|++|++++|.+.
T Consensus 119 l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i~- 191 (210)
T d1h6ta2 119 LEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS- 191 (210)
T ss_dssp CTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-
T ss_pred ccccccc-cc-ccccccccccccccccccccc--ccccccccccccccccccccccc--ccccCCCCCCEEECCCCCCC-
Confidence 5555543 22 235555555555555555442 23344555555555555555432 12445555555555555544
Q ss_pred cCCchhhcCCCCcCeeecc
Q 036593 225 RLPSTIGHSLPNIEYLTLA 243 (574)
Q Consensus 225 ~~~~~~~~~l~~L~~L~l~ 243 (574)
.++ .+ ..+++|+.|+++
T Consensus 192 ~l~-~l-~~l~~L~~L~Ls 208 (210)
T d1h6ta2 192 DLR-AL-AGLKNLDVLELF 208 (210)
T ss_dssp BCG-GG-TTCTTCSEEEEE
T ss_pred CCh-hh-cCCCCCCEEEcc
Confidence 232 12 244455555443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.64 E-value=2.4e-16 Score=137.10 Aligned_cols=154 Identities=24% Similarity=0.281 Sum_probs=123.5
Q ss_pred EEccCCeeeecCCccCcCCCCCCeEECCCCeecc-cCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCc
Q 036593 411 LELNGNKLSGHIPPCLASLTSLRELRLGSNKLTS-SIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQ 489 (574)
Q Consensus 411 l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 489 (574)
++.++++++ .+|..+. +++++|+|++|++++ .....|..+++|++|++++|.+....+..+..+++|++|++++|+
T Consensus 13 v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~ 89 (192)
T d1w8aa_ 13 VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence 344444444 5555443 689999999999975 456778899999999999999998888999999999999999999
Q ss_pred ccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcCcccCCCCCeEeccCCccccccCC
Q 036593 490 LSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKSLEALSHLKQFNVSQNMLEGEIPV 568 (574)
Q Consensus 490 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 568 (574)
+....+.+|.++++|++|+|++|+++...+.+|..+++|++|++++|++..... ...-...++...+..+.+....|.
T Consensus 90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~-~~~~~~~l~~~~l~~~~~~c~~p~ 167 (192)
T d1w8aa_ 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG-GHHHHHHHHHHCCSGGGCBBCSST
T ss_pred ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc-hHHHhhhhhhhcccCCCeEeCCCh
Confidence 998888899999999999999999998888899999999999999999874221 111112356667777777766664
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.57 E-value=7.6e-17 Score=154.75 Aligned_cols=135 Identities=18% Similarity=0.262 Sum_probs=61.2
Q ss_pred CCCCCeEECCCCeeccc----CCccccCCCCCCeEeCCCCcceec-----CCccccCCCCCCEEeCCCCccccc----Cc
Q 036593 429 LTSLRELRLGSNKLTSS----IPSSLWSLEYILEINLSSNSLNDS-----LPSNVQKLKVLRVLDLSRNQLSGN----IP 495 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~~~l~~~-----~~~~~~~l~~L~~L~l~~n~~~~~----~~ 495 (574)
.+.|+.+++++|.+... +...+..++.|++|++++|.+... +...+..+++|+.|++++|.+... +.
T Consensus 157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~ 236 (344)
T d2ca6a1 157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 236 (344)
T ss_dssp CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence 34455555555544322 112233345555555555554321 122344455555555555554322 12
Q ss_pred ccccCCCCCCEeeCCCCcccccCCcc----cc--CCcCCCeeeCCCCcccccCC----cCcc-cCCCCCeEeccCCccc
Q 036593 496 STIGALVDLETLSLASNQFQGPIPES----VG--SLISLESLDLSGNNFSGKIP----KSLE-ALSHLKQFNVSQNMLE 563 (574)
Q Consensus 496 ~~~~~~~~L~~L~l~~n~~~~~~~~~----l~--~~~~L~~L~l~~n~~~~~~~----~~l~-~l~~L~~l~l~~n~~~ 563 (574)
..+..+++|++|++++|.+++..... +. ..+.|++|++++|+++.... ..+. +.++|+.|++++|++.
T Consensus 237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 33445555555666555554321111 11 12445566666665543211 1121 3455666666666553
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4.4e-15 Score=124.28 Aligned_cols=128 Identities=21% Similarity=0.209 Sum_probs=105.6
Q ss_pred CcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCC
Q 036593 426 LASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLE 505 (574)
Q Consensus 426 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 505 (574)
+.++.++++|++++|+|+ .++..+..+++|+.|++++|.+... +.+..+++|++|++++|.+....+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 557788999999999997 4466667889999999999999765 3578899999999999999876666677899999
Q ss_pred EeeCCCCcccccCC-ccccCCcCCCeeeCCCCcccccCCc----CcccCCCCCeEec
Q 036593 506 TLSLASNQFQGPIP-ESVGSLISLESLDLSGNNFSGKIPK----SLEALSHLKQFNV 557 (574)
Q Consensus 506 ~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~l~l 557 (574)
+|++++|++..... ..+..+++|+.|++++|++.. .+. .+..+|+|+.||-
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETT
T ss_pred cceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCC
Confidence 99999999885322 467888999999999999974 332 4778999999873
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.1e-15 Score=139.73 Aligned_cols=224 Identities=20% Similarity=0.165 Sum_probs=99.9
Q ss_pred cEEEccCCcccccCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCccccc-CCcCCCCCCCCceeeccc
Q 036593 69 MSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGP-IPNSLFNLSKLEMLQASF 147 (574)
Q Consensus 69 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~ 147 (574)
+.+|++++.+.......+-. ..+..+.+....+.... .......+|++|+++++.+... ....+..+++|++|++++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~ 80 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence 35677766553221111111 13345555444333111 1222344666666666654422 122244556666666666
Q ss_pred ccCcccCchhccCCCCCCEEEccCC-cCCcCCC-ccccCCCCCCEEEccCCcccccCchhhcccCCCcEEEcccCccccc
Q 036593 148 NVIDGNIPSGIGNLSNLFDLDLRHN-NLQDQIP-TEIGNLQNLESLALGTNNLSGLIPPAIFNISTIRVLNLHSNQFSGR 225 (574)
Q Consensus 148 ~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 225 (574)
+.+.+..+..++++++|++|+++++ .+++... ..+..+++|++|++++|.. +++.
T Consensus 81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~-----------------------~~~~ 137 (284)
T d2astb2 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD-----------------------FTEK 137 (284)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT-----------------------CCHH
T ss_pred cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccc-----------------------cccc
Confidence 5554444445555555666665553 2322111 1123345555555554321 1111
Q ss_pred -CCchhhcCCCCcCeeeccccc--ceec-CCcCccCCCCccEEeCCCCc-eeecCCCCccCCCcCceEEccCCc-ccccC
Q 036593 226 -LPSTIGHSLPNIEYLTLAINN--LIGT-IPDSLTNASKLIGLDLGSNS-FSGHIPNTFGNLRHLNVLSIRTNN-LTTES 299 (574)
Q Consensus 226 -~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~ 299 (574)
+...+....+.|+.|+++++. +... .......+++|++|++++|. +++.....+..+++|++|++++|. +++.
T Consensus 138 ~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~- 216 (284)
T d2astb2 138 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE- 216 (284)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG-
T ss_pred cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChH-
Confidence 111112223444444444321 1111 11112345556666665542 444444555666667777776653 3332
Q ss_pred CCCccccccccccCCCCCcEEEccCC
Q 036593 300 SSADQWSFLSSLTNCRKLSYLVLDSN 325 (574)
Q Consensus 300 ~~~~~~~~~~~l~~~~~L~~L~l~~~ 325 (574)
.+..++.+++|++|+++++
T Consensus 217 -------~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 217 -------TLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp -------GGGGGGGCTTCCEEECTTS
T ss_pred -------HHHHHhcCCCCCEEeeeCC
Confidence 1223556677777777665
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.4e-15 Score=140.85 Aligned_cols=198 Identities=18% Similarity=0.162 Sum_probs=123.3
Q ss_pred EEEEcCCCCCccccCCCccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEccCCcCccC-CCccccCCCCCCEEEccC
Q 036593 45 KALNLSGMGLGGTIPPHLGNLSFLMSLDVTLNNFYGHLPNELGKLGRLKFISFSFNKLSGS-IPTWIGVLSKLQIMSLRN 123 (574)
Q Consensus 45 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~ 123 (574)
+++|++++.+.......+.. ..+..+.+++......... .....+|++|++++|.+... ....+.++++|++|++++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~ 80 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence 47899888775332222221 2456777776655432222 33456899999999987644 345578999999999999
Q ss_pred CcccccCCcCCCCCCCCceeeccccc-Cccc-CchhccCCCCCCEEEccCCc-CCcCC-Ccccc-CCCCCCEEEccCCc-
Q 036593 124 NNITGPIPNSLFNLSKLEMLQASFNV-IDGN-IPSGIGNLSNLFDLDLRHNN-LQDQI-PTEIG-NLQNLESLALGTNN- 197 (574)
Q Consensus 124 ~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~l~-~l~~L~~L~l~~~~- 197 (574)
+.+.+..+..+..+++|++|++++|. ++.. +.....++++|++|+++++. +++.. ...+. ..++|+.|+++++.
T Consensus 81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 160 (284)
T d2astb2 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160 (284)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence 98876667778889999999999964 4422 22224678999999999863 43221 12222 24678888887653
Q ss_pred -cccc-CchhhcccCCCcEEEcccCc-ccccCCchhhcCCCCcCeeecccc
Q 036593 198 -LSGL-IPPAIFNISTIRVLNLHSNQ-FSGRLPSTIGHSLPNIEYLTLAIN 245 (574)
Q Consensus 198 -~~~~-~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~ 245 (574)
+.+. .......+++|++|++++|. +++.....+. .+++|++|++++|
T Consensus 161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C 210 (284)
T d2astb2 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRC 210 (284)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTC
T ss_pred ccccccccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCC
Confidence 2221 12223456677777776653 4433333333 3445555555443
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.53 E-value=9.3e-16 Score=147.05 Aligned_cols=251 Identities=18% Similarity=0.211 Sum_probs=147.7
Q ss_pred ccCCCCccEEeCCCCceeec----CCCCccCCCcCceEEccCCcccccCCC--CccccccccccCCCCCcEEEccCCCCC
Q 036593 255 LTNASKLIGLDLGSNSFSGH----IPNTFGNLRHLNVLSIRTNNLTTESSS--ADQWSFLSSLTNCRKLSYLVLDSNPLG 328 (574)
Q Consensus 255 ~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~ 328 (574)
+.....++.|++++|.+... ....+...++|+.++++.+........ .....+...+..+++|++|++++|.++
T Consensus 27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 106 (344)
T d2ca6a1 27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 106 (344)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence 44455666677776665432 223345567777777766543322111 011123445666777888888777766
Q ss_pred CCCChhhhhhccccceEEeccccccccCCccccCCCCCcEEECcCCCCcccCCcC-------------ccccCCCCeEec
Q 036593 329 GILPPLIGNFSASLQSFYAYECKLGGSIPKEIGNLRGLILLTLDFNDLNGTIPTS-------------VGTLQQLQGLSL 395 (574)
Q Consensus 329 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l 395 (574)
......+.. .+..+++|++|++++|.+....... ....+.|+.+.+
T Consensus 107 ~~~~~~l~~---------------------~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l 165 (344)
T d2ca6a1 107 PTAQEPLID---------------------FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 165 (344)
T ss_dssp TTTHHHHHH---------------------HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred cccccchhh---------------------hhcccccchheecccccccccccccccccccccccccccccCcccceeec
Confidence 543322221 2334556666777666554211100 123456666666
Q ss_pred cCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeeccc-----CCccccCCCCCCeEeCCCCcceec-
Q 036593 396 EDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSS-----IPSSLWSLEYILEINLSSNSLNDS- 469 (574)
Q Consensus 396 ~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~L~~~~l~~~- 469 (574)
+++.++.... ..+...+..++.|++|++++|++... ....+..+++|++|++++|.+...
T Consensus 166 ~~n~i~~~~~--------------~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g 231 (344)
T d2ca6a1 166 GRNRLENGSM--------------KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 231 (344)
T ss_dssp CSSCCTGGGH--------------HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH
T ss_pred cccccccccc--------------ccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccc
Confidence 6666542110 02223345667888888888887532 234566778888888888887543
Q ss_pred ---CCccccCCCCCCEEeCCCCcccccCcc----cccC--CCCCCEeeCCCCcccccC----Ccccc-CCcCCCeeeCCC
Q 036593 470 ---LPSNVQKLKVLRVLDLSRNQLSGNIPS----TIGA--LVDLETLSLASNQFQGPI----PESVG-SLISLESLDLSG 535 (574)
Q Consensus 470 ---~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~--~~~L~~L~l~~n~~~~~~----~~~l~-~~~~L~~L~l~~ 535 (574)
+...+..+++|++|++++|.+.+.... .+.. .+.|++|++++|+++... ...+. .+++|+.|++++
T Consensus 232 ~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~ 311 (344)
T d2ca6a1 232 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311 (344)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred cccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCC
Confidence 334566788899999998888754332 2322 467899999999887532 22332 457899999999
Q ss_pred Ccccc
Q 036593 536 NNFSG 540 (574)
Q Consensus 536 n~~~~ 540 (574)
|.+..
T Consensus 312 N~~~~ 316 (344)
T d2ca6a1 312 NRFSE 316 (344)
T ss_dssp SBSCT
T ss_pred CcCCC
Confidence 98863
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.5e-14 Score=120.88 Aligned_cols=128 Identities=16% Similarity=0.120 Sum_probs=102.6
Q ss_pred ccccCCCCeEeccCCcccccCCCCCceEEccCCeeeecCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCC
Q 036593 384 VGTLQQLQGLSLEDNNLEGSIPYDLCHLELNGNKLSGHIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSS 463 (574)
Q Consensus 384 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 463 (574)
+.+..++++|++++|+++ .++..+..+++|+.|++++|++... ..+..+++|++|++++
T Consensus 14 ~~n~~~lr~L~L~~n~I~-------------------~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~ 72 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-------------------VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNN 72 (162)
T ss_dssp EECTTSCEEEECTTSCCC-------------------SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCS
T ss_pred ccCcCcCcEEECCCCCCC-------------------ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhccc
Confidence 455667777777777776 4455567789999999999999744 3578899999999999
Q ss_pred CcceecCCccccCCCCCCEEeCCCCcccccC-cccccCCCCCCEeeCCCCcccccCC----ccccCCcCCCeeeC
Q 036593 464 NSLNDSLPSNVQKLKVLRVLDLSRNQLSGNI-PSTIGALVDLETLSLASNQFQGPIP----ESVGSLISLESLDL 533 (574)
Q Consensus 464 ~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l 533 (574)
|.+....+..+..+++|+.|++++|.+.... ...+..+++|++|++++|+++. .+ ..+..+|+|+.||-
T Consensus 73 N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 73 NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp SCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETT
T ss_pred ccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCC
Confidence 9998877766788999999999999987542 2568889999999999999984 33 25788899998873
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=2.2e-13 Score=107.99 Aligned_cols=118 Identities=29% Similarity=0.365 Sum_probs=75.5
Q ss_pred CeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCC
Q 036593 433 RELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASN 512 (574)
Q Consensus 433 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 512 (574)
|.|++++|+++ ..+ .+..+++|++|++++|.+.+ +|..+..+++|++|++++|.++.. + .++.+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence 46777777775 333 35667777777777777753 445566777777777777777643 2 3667777777777777
Q ss_pred cccccC-CccccCCcCCCeeeCCCCcccccC--Cc-CcccCCCCCeE
Q 036593 513 QFQGPI-PESVGSLISLESLDLSGNNFSGKI--PK-SLEALSHLKQF 555 (574)
Q Consensus 513 ~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~--~~-~l~~l~~L~~l 555 (574)
++.... ...+..+++|+.|++++|++.... ++ .+..+|+|+.|
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 776432 245667777777777777776421 12 23446776665
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=3.4e-13 Score=106.81 Aligned_cols=104 Identities=27% Similarity=0.358 Sum_probs=89.9
Q ss_pred CeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCC
Q 036593 457 LEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGN 536 (574)
Q Consensus 457 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 536 (574)
+.|++++|.++.. + .+.++++|++|++++|.++ .++..++.+++|++|++++|.++. .+ .+..+++|+.|++++|
T Consensus 1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 5799999999754 3 4889999999999999998 456678999999999999999984 43 5899999999999999
Q ss_pred cccccC-CcCcccCCCCCeEeccCCccccc
Q 036593 537 NFSGKI-PKSLEALSHLKQFNVSQNMLEGE 565 (574)
Q Consensus 537 ~~~~~~-~~~l~~l~~L~~l~l~~n~~~~~ 565 (574)
++.... .+.+..+++|+.+++++|++++.
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~ 105 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence 998643 35688999999999999999753
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.28 E-value=3.1e-14 Score=123.53 Aligned_cols=136 Identities=25% Similarity=0.339 Sum_probs=103.2
Q ss_pred cCCccCcCCCCCCeEECCCCeecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCcccccC
Q 036593 421 HIPPCLASLTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGA 500 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 500 (574)
.++..+..+++|++|++++|+++. + ..+..+++|++|++++|.+.. ++.....+++|+.|++++|+++.. ..+.+
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i-~~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~ 113 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEK 113 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEESC-C-CCHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred hhhhHHhcccccceeECcccCCCC-c-ccccCCccccChhhccccccc-cccccccccccccccccccccccc--ccccc
Confidence 344567788899999999999874 3 357788999999999998864 344445567899999999988843 34778
Q ss_pred CCCCCEeeCCCCcccccCC-ccccCCcCCCeeeCCCCcccccCCcC----------cccCCCCCeEeccCCccc
Q 036593 501 LVDLETLSLASNQFQGPIP-ESVGSLISLESLDLSGNNFSGKIPKS----------LEALSHLKQFNVSQNMLE 563 (574)
Q Consensus 501 ~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~----------l~~l~~L~~l~l~~n~~~ 563 (574)
+++|+.|++++|+++.... ..+..+++|+.|++++|++....+.. +..+|+|+.|| +.+|+
T Consensus 114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~ 185 (198)
T d1m9la_ 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence 8999999999999874322 45788899999999999887544332 56789999887 44554
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.5e-11 Score=101.73 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=86.5
Q ss_pred cCCccCcCCCCCCeEECCCC-eecccCCccccCCCCCCeEeCCCCcceecCCccccCCCCCCEEeCCCCcccccCccccc
Q 036593 421 HIPPCLASLTSLRELRLGSN-KLTSSIPSSLWSLEYILEINLSSNSLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIG 499 (574)
Q Consensus 421 ~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 499 (574)
..|..+..+++|++|+++++ .++...+.+|..+++|+.|++++|.+....+..|..+++|++|+|++|++.......|.
T Consensus 22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~ 101 (156)
T d2ifga3 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (156)
T ss_dssp TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc
Confidence 45566777888888888765 47666667788888888888888888877778888888888888888888855555554
Q ss_pred CCCCCCEeeCCCCccccc-CCccccCCcCCCeeeCCCCcccccCCcCcccCC
Q 036593 500 ALVDLETLSLASNQFQGP-IPESVGSLISLESLDLSGNNFSGKIPKSLEALS 550 (574)
Q Consensus 500 ~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 550 (574)
. .+|+.|+|++|.+... ....+..+.......+..+++....|..+..+|
T Consensus 102 ~-~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p 152 (156)
T d2ifga3 102 G-LSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP 152 (156)
T ss_dssp S-CCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCC
T ss_pred c-ccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCC
Confidence 3 4688888888877521 111122222223334445566655665555554
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=5.6e-11 Score=98.11 Aligned_cols=109 Identities=22% Similarity=0.208 Sum_probs=85.7
Q ss_pred CCCCCeEECCCCeecccCCccccCCCCCCeEeCCCC-cceecCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCEe
Q 036593 429 LTSLRELRLGSNKLTSSIPSSLWSLEYILEINLSSN-SLNDSLPSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETL 507 (574)
Q Consensus 429 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 507 (574)
+...+.++.+++.+. ..+..+..+++|++|+++++ .+....+..|..+++|+.|++++|++..+.+.+|.++++|++|
T Consensus 7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 85 (156)
T d2ifga3 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (156)
T ss_dssp CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence 345567888888776 55667778888899998766 4777677778888999999999999887778888888999999
Q ss_pred eCCCCcccccCCccccCCcCCCeeeCCCCccc
Q 036593 508 SLASNQFQGPIPESVGSLISLESLDLSGNNFS 539 (574)
Q Consensus 508 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 539 (574)
+|++|+++...+..|.. .+|+.|+|++|++.
T Consensus 86 ~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 86 NLSFNALESLSWKTVQG-LSLQELVLSGNPLH 116 (156)
T ss_dssp ECCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred eccCCCCcccChhhhcc-ccccccccCCCccc
Confidence 99999988554555554 46888999988885
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.21 E-value=2.6e-13 Score=117.54 Aligned_cols=114 Identities=30% Similarity=0.342 Sum_probs=72.1
Q ss_pred cCchhhcCCCCCCEEEccCCcCccCCCccccCCCCCCEEEccCCcccccCCcCCCCCCCCceeecccccCcccCchhccC
Q 036593 81 HLPNELGKLGRLKFISFSFNKLSGSIPTWIGVLSKLQIMSLRNNNITGPIPNSLFNLSKLEMLQASFNVIDGNIPSGIGN 160 (574)
Q Consensus 81 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 160 (574)
.++..++.+++|++|++++|++... + .+..+++|++|++++|.+. .++.....+++|++|++++|.++. + ..+.+
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~ 113 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK 113 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccc
Confidence 3455667777777777777776643 2 3666777777777777665 334333445567777777777652 2 34666
Q ss_pred CCCCCEEEccCCcCCcCCC-ccccCCCCCCEEEccCCccc
Q 036593 161 LSNLFDLDLRHNNLQDQIP-TEIGNLQNLESLALGTNNLS 199 (574)
Q Consensus 161 l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 199 (574)
+++|++|++++|.+..... ..++.+++|+.|++++|++.
T Consensus 114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred cccccccccccchhccccccccccCCCccceeecCCCccc
Confidence 7777777777776654321 34666777777777777654
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.2e-08 Score=84.55 Aligned_cols=85 Identities=24% Similarity=0.246 Sum_probs=60.6
Q ss_pred ccccCCCCCCEEeCCCCcccccC--cccccCCCCCCEeeCCCCcccccCCccccCCcCCCeeeCCCCcccccCCcC----
Q 036593 472 SNVQKLKVLRVLDLSRNQLSGNI--PSTIGALVDLETLSLASNQFQGPIPESVGSLISLESLDLSGNNFSGKIPKS---- 545 (574)
Q Consensus 472 ~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~---- 545 (574)
..+..+++|++|++++|+++... +..+..+++|+.|++++|.+....+-.+.....|+.|++++|++.......
T Consensus 59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~ 138 (162)
T d1koha1 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138 (162)
T ss_dssp HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence 34456788888999988887542 345667889999999999888543333344567888999999887543322
Q ss_pred ---cccCCCCCeEe
Q 036593 546 ---LEALSHLKQFN 556 (574)
Q Consensus 546 ---l~~l~~L~~l~ 556 (574)
+..+|+|+.||
T Consensus 139 ~~i~~~~P~L~~LD 152 (162)
T d1koha1 139 SAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHTTSTTCCEET
T ss_pred HHHHHHCCCCCEEC
Confidence 45688888886
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.6e-08 Score=83.66 Aligned_cols=84 Identities=29% Similarity=0.233 Sum_probs=57.1
Q ss_pred cccCCCCCCeEeCCCCcceecC--CccccCCCCCCEEeCCCCcccccCcccccCCCCCCEeeCCCCcccccCC-------
Q 036593 449 SLWSLEYILEINLSSNSLNDSL--PSNVQKLKVLRVLDLSRNQLSGNIPSTIGALVDLETLSLASNQFQGPIP------- 519 (574)
Q Consensus 449 ~~~~~~~L~~L~L~~~~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~------- 519 (574)
.+..++.|++|+|++|.++... +..+..+++|+.|++++|.+.....-.+.+...|++|++++|++.....
T Consensus 60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~ 139 (162)
T d1koha1 60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS 139 (162)
T ss_dssp HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence 3445677777778877776542 3445677888888888888875443334445678888888888875432
Q ss_pred ccccCCcCCCeee
Q 036593 520 ESVGSLISLESLD 532 (574)
Q Consensus 520 ~~l~~~~~L~~L~ 532 (574)
..+..+|+|+.||
T Consensus 140 ~i~~~~P~L~~LD 152 (162)
T d1koha1 140 AIRERFPKLLRLD 152 (162)
T ss_dssp HHHTTSTTCCEET
T ss_pred HHHHHCCCCCEEC
Confidence 2356778888775
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.09 E-value=7.1e-07 Score=73.87 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=56.4
Q ss_pred CCCCCCeEECCCC-eeccc----CCccccCCCCCCeEeCCCCcceec----CCccccCCCCCCEEeCCCCcccccC----
Q 036593 428 SLTSLRELRLGSN-KLTSS----IPSSLWSLEYILEINLSSNSLNDS----LPSNVQKLKVLRVLDLSRNQLSGNI---- 494 (574)
Q Consensus 428 ~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~---- 494 (574)
+.++|++|+|+++ .+... +..++...++|++|++++|.+.+. +...+...+.|++|++++|.+....
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 4567777777764 34322 233455556677777776666543 1223344566666666666655322
Q ss_pred cccccCCCCCCEeeCCCCccccc-------CCccccCCcCCCeeeCCCC
Q 036593 495 PSTIGALVDLETLSLASNQFQGP-------IPESVGSLISLESLDLSGN 536 (574)
Q Consensus 495 ~~~~~~~~~L~~L~l~~n~~~~~-------~~~~l~~~~~L~~L~l~~n 536 (574)
...+...++|++|++++|.+... +..++...++|+.|+++.+
T Consensus 93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 22344556666666666543321 2223334455555555444
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.08 E-value=5e-07 Score=74.85 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=76.9
Q ss_pred cCCCCCCeEeCCCC-cceec----CCccccCCCCCCEEeCCCCcccccCc----ccccCCCCCCEeeCCCCccccc----
Q 036593 451 WSLEYILEINLSSN-SLNDS----LPSNVQKLKVLRVLDLSRNQLSGNIP----STIGALVDLETLSLASNQFQGP---- 517 (574)
Q Consensus 451 ~~~~~L~~L~L~~~-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~---- 517 (574)
.+.++|++|+|+++ .+... +...+...++|++|++++|.+..... ..+...+.|++|+|++|.++..
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence 35678899999874 45433 23456677889999999888764322 3455578899999999988763
Q ss_pred CCccccCCcCCCeeeCCCCccccc-------CCcCcccCCCCCeEeccCCcc
Q 036593 518 IPESVGSLISLESLDLSGNNFSGK-------IPKSLEALSHLKQFNVSQNML 562 (574)
Q Consensus 518 ~~~~l~~~~~L~~L~l~~n~~~~~-------~~~~l~~l~~L~~l~l~~n~~ 562 (574)
+..++...++|++|++++|.+... +...+...++|+.++++.+..
T Consensus 92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence 234567778899999988865432 223445568888888877643
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.68 E-value=5.9e-06 Score=68.18 Aligned_cols=83 Identities=18% Similarity=0.264 Sum_probs=40.2
Q ss_pred cCCCCCCeEECCCC-eeccc----CCccccCCCCCCeEeCCCCcceec----CCccccCCCCCCEEeCCCCcccccC---
Q 036593 427 ASLTSLRELRLGSN-KLTSS----IPSSLWSLEYILEINLSSNSLNDS----LPSNVQKLKVLRVLDLSRNQLSGNI--- 494 (574)
Q Consensus 427 ~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~L~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~--- 494 (574)
.+.++|++|+++++ .++.. +..++...++|++|++++|.+... +...+...++++.+++++|.+....
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 44566777777653 34322 223344555666666666655433 1223344455555555555543221
Q ss_pred -cccccCCCCCCEeeC
Q 036593 495 -PSTIGALVDLETLSL 509 (574)
Q Consensus 495 -~~~~~~~~~L~~L~l 509 (574)
...+...++|+.++|
T Consensus 94 l~~~l~~~~~L~~l~L 109 (166)
T d1io0a_ 94 LVEALQSNTSLIELRI 109 (166)
T ss_dssp HHHGGGGCSSCCEEEC
T ss_pred HHHHHHhCccccEEee
Confidence 133444455554433
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.63 E-value=5.7e-06 Score=68.28 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=78.6
Q ss_pred cccCCCCCCeEeCCC-Ccceec----CCccccCCCCCCEEeCCCCcccccCc----ccccCCCCCCEeeCCCCccccc--
Q 036593 449 SLWSLEYILEINLSS-NSLNDS----LPSNVQKLKVLRVLDLSRNQLSGNIP----STIGALVDLETLSLASNQFQGP-- 517 (574)
Q Consensus 449 ~~~~~~~L~~L~L~~-~~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~-- 517 (574)
...+.++|++|++++ +.++.. +..++..+++|++|++++|.+..... ..+...++++.+++++|.++..
T Consensus 12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~ 91 (166)
T d1io0a_ 12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 91 (166)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence 344668899999987 455443 33455678889999999998764322 3456678899999999987653
Q ss_pred --CCccccCCcCCCeeeC--CCCcccc----cCCcCcccCCCCCeEeccCCcc
Q 036593 518 --IPESVGSLISLESLDL--SGNNFSG----KIPKSLEALSHLKQFNVSQNML 562 (574)
Q Consensus 518 --~~~~l~~~~~L~~L~l--~~n~~~~----~~~~~l~~l~~L~~l~l~~n~~ 562 (574)
+...+...++|+.++| ++|++.. .+...+...++|++|++..++.
T Consensus 92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 2355677788887555 5666765 2334456778999999887653
|