Citrus Sinensis ID: 036605
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 340 | ||||||
| 297743397 | 637 | unnamed protein product [Vitis vinifera] | 0.961 | 0.513 | 0.521 | 1e-100 | |
| 255553081 | 634 | conserved hypothetical protein [Ricinus | 0.844 | 0.452 | 0.587 | 1e-93 | |
| 356528954 | 620 | PREDICTED: WD repeat-containing protein | 0.952 | 0.522 | 0.440 | 3e-76 | |
| 356522359 | 622 | PREDICTED: WD repeat-containing protein | 0.829 | 0.453 | 0.496 | 3e-74 | |
| 449436601 | 624 | PREDICTED: WD repeat-containing protein | 0.811 | 0.442 | 0.501 | 2e-64 | |
| 359482669 | 234 | PREDICTED: uncharacterized WD repeat-con | 0.561 | 0.816 | 0.619 | 2e-63 | |
| 147767919 | 282 | hypothetical protein VITISV_028174 [Viti | 0.655 | 0.790 | 0.507 | 2e-62 | |
| 147856060 | 546 | hypothetical protein VITISV_024551 [Viti | 0.511 | 0.318 | 0.482 | 8e-48 | |
| 115438873 | 607 | Os01g0649000 [Oryza sativa Japonica Grou | 0.797 | 0.446 | 0.368 | 6e-45 | |
| 125527065 | 607 | hypothetical protein OsI_03069 [Oryza sa | 0.797 | 0.446 | 0.368 | 6e-45 |
| >gi|297743397|emb|CBI36264.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/374 (52%), Positives = 248/374 (66%), Gaps = 47/374 (12%)
Query: 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGT-LLLALGTSNGDILAVDV 59
IW+T+ SL+AEWK PD + + YSC+ C FVGKKRRKERG LLLAL T++G+IL VD+
Sbjct: 32 IWNTSYQSLVAEWKGPDVDSGIGYSCMTCSFVGKKRRKERGACLLLALVTNDGNILVVDI 91
Query: 60 LTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPIS 119
GEMKW+S+ HPGG+ GL+FA KGR LHVVGTNGM S +KSE GE+I EFKAS+KPIS
Sbjct: 92 FAGEMKWESSRYHPGGIVGLSFANKGRILHVVGTNGMVSTLKSENGELIGEFKASKKPIS 151
Query: 120 SSAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKH 179
S AF +EKI A+A S++R+LSLENG+E+LKF DD+ +Q + S+ A I+T+G+GEKH
Sbjct: 152 SLAFSSDEKILAIAGSKIRVLSLENGKELLKFPDDLESVQSIWISNDANTIVTSGFGEKH 211
Query: 180 LQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239
LQVW CD++ KTV+KGP LSM+H PV +CK+ N +DG VIL+V+ SG AY W+LKT S
Sbjct: 212 LQVWNCDLNRKTVSKGPVLSMKHPPVVFECKHGWNEDDGLVILSVSSSGTAYLWNLKTTS 271
Query: 240 QDEKTNPAKITVKLKKADADQQNSVNVKKSRTSIIAARLNDLEADGQKT----------- 288
E NP KI VK K+A+ DQ++S + KKSRTSII ARLN L++DG T
Sbjct: 272 AQE-YNPTKIMVKTKEAEIDQKHSGSTKKSRTSIITARLNALQSDGWVTALVCYGSINSP 330
Query: 289 ----------------------------------ITGLHDLESEAATASAQNEKKSKKRA 314
+ DLE EA QN+K +KKRA
Sbjct: 331 QFNLLEISNPGEDIVVAATDNIVKTVAEAGRENGVLAGKDLELEAVAEPIQNKKSNKKRA 390
Query: 315 ASDPDLETTRDVVD 328
ASDPDL ++VD
Sbjct: 391 ASDPDLAAAENMVD 404
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553081|ref|XP_002517583.1| conserved hypothetical protein [Ricinus communis] gi|223543215|gb|EEF44747.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/291 (58%), Positives = 220/291 (75%), Gaps = 4/291 (1%)
Query: 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL 60
IWST +GSLLAEWKQ D + V SYSC+AC FVGKKR++E T LLALGT GDILA D
Sbjct: 31 IWSTGNGSLLAEWKQSDDDSV-SYSCMACSFVGKKRKQEHSTFLLALGTHGGDILATDAF 89
Query: 61 TGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS 120
TG+MKWKS+G HPGG+ GLAFA KGRSL VGTNG ASEM S+ GE+ EFKAS++PISS
Sbjct: 90 TGDMKWKSSGHHPGGVIGLAFANKGRSLRSVGTNGKASEMNSKSGELTVEFKASKRPISS 149
Query: 121 SAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHL 180
AF +E++ A SS R+LSL NG+E+ KF DD+G +Q++S S AK I+T G+GEK L
Sbjct: 150 LAFSSDEEVLAAVSSRARLLSLVNGKELFKFPDDLGTVQHISISKSAKNIVTTGFGEKIL 209
Query: 181 QVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPN--GEDGTVILAVAESGVAYSWDLKTV 238
+WRC++SSK+++ GP LSMRH P+ I+CK++ + EDG ++L+V+ESGV Y W+LKT
Sbjct: 210 HLWRCNLSSKSLSAGPVLSMRHPPLVIECKSTGDEKEEDGLIVLSVSESGVVYVWNLKTS 269
Query: 239 SQDEKTNPAKITVKLKKADADQQNSVNVKKSRTSIIAARLNDLEADGQKTI 289
SQDE NP KITVK K++ +Q N KK R SI+AA+L+D++ D Q T+
Sbjct: 270 SQDE-VNPTKITVKGSKSETNQHNGDYSKKHRPSILAAQLHDIKDDKQFTV 319
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528954|ref|XP_003533062.1| PREDICTED: WD repeat-containing protein 43-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 159/361 (44%), Positives = 221/361 (61%), Gaps = 37/361 (10%)
Query: 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL 60
IW+TN G LLAEWK DG+ + YSC+AC F+GKKRRKE+GT LLALGT +G +LAVDV
Sbjct: 32 IWNTNTGHLLAEWKPSDGDHDIRYSCIACSFIGKKRRKEQGTCLLALGTIDGSVLAVDVS 91
Query: 61 TGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS 120
TGE K T HPGG+ GL+FA KGR L +VG NG+A + +E GE+++EFK ++K I+S
Sbjct: 92 TGERKL--TTSHPGGICGLSFANKGRLLRIVGHNGVAYGVNTETGELLKEFKITKKSITS 149
Query: 121 SAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHL 180
AF +EK A+ SS R++S E GEE+LKF +D+G ++++S S AK ++T+ + KHL
Sbjct: 150 LAFSNDEKYLAIVSSRPRVISWEIGEEILKFPNDLGNVEHISISSDAKNLVTSDFEGKHL 209
Query: 181 QVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240
QVW+CD++S + +GP L +RH P+ +DC + N ED V+LAV G AY W+L S+
Sbjct: 210 QVWKCDLNSGNLCRGPTLPIRHPPLVLDCHSGCNKED-VVVLAVTGRGSAYIWNLSASSK 268
Query: 241 DEKTNPAKITVKLKKADADQQNSVNVKKSRTSIIAARLNDLEADGQ-------------- 286
D+ P K+T + K + D++N V+ KK T IIA+RL +E + Q
Sbjct: 269 DQ-IQPTKLTTETKIVETDKENGVSSKKRHTLIIASRLQPVEENKQMKALVTYGSVDHPQ 327
Query: 287 ------------------KTITGLHDLESEAATASAQNEKKSKKR-AASDPDLETTRDVV 327
+ +S + A KK+KKR A SDPDL TT + V
Sbjct: 328 FSILNISNSGENIVLYVGDETDSVQQHDSPSGKAIPMESKKAKKRQATSDPDLPTTTNEV 387
Query: 328 D 328
D
Sbjct: 388 D 388
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522359|ref|XP_003529814.1| PREDICTED: WD repeat-containing protein 43-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 142/286 (49%), Positives = 196/286 (68%), Gaps = 4/286 (1%)
Query: 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL 60
IW+TN G LLAEWK G+ + YSC+AC F+G+K RKE+GT LLAL T +G ++AVDV
Sbjct: 32 IWNTNTGHLLAEWKPSKGDHDIHYSCIACSFIGEKHRKEQGTSLLALSTIDGSVIAVDVS 91
Query: 61 TGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS 120
TGE K T HPGG+ GL+FA KGR L +VG NG+A E+ +E GEV++EFK S+K I+S
Sbjct: 92 TGERKL--TTSHPGGICGLSFANKGRLLRIVGHNGVAYEVNTETGEVLKEFKISKKSITS 149
Query: 121 SAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHL 180
AF +EK A+ SS +RI+S E G+E+LKF +D+G +Q +S S AK ++T+ + KHL
Sbjct: 150 LAFSNDEKYLAIVSSRLRIISWEIGKEILKFPNDLGNVQLISISSDAKNLVTSDFEGKHL 209
Query: 181 QVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240
QVW+CD++S V +GP L +RH P+ +DC + N ED V+LAV G AY W+L S+
Sbjct: 210 QVWKCDLNSGNVGRGPTLPIRHPPLILDCHSGCNKED-VVVLAVTGRGSAYIWNLNASSE 268
Query: 241 DEKTNPAKITVKLKKADADQQNSVNVKKSRTSIIAARLNDLEADGQ 286
D+ P K+ K K + +++N V+ KK SIIA+RL +E D Q
Sbjct: 269 DQ-IQPTKLNTKTKIVETEKENGVSSKKRHASIIASRLQPVEEDKQ 313
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436601|ref|XP_004136081.1| PREDICTED: WD repeat-containing protein 43-like [Cucumis sativus] gi|449491125|ref|XP_004158808.1| PREDICTED: WD repeat-containing protein 43-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/279 (50%), Positives = 197/279 (70%), Gaps = 3/279 (1%)
Query: 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL 60
IWST DGSLLAEWK DG+ YSC+AC F+GKKR+ ++A+GT++GD+LAV+
Sbjct: 32 IWSTRDGSLLAEWKDLDGKNDFGYSCMACCFLGKKRKS--SYCVVAIGTNSGDVLAVNAS 89
Query: 61 TGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS 120
GE KW S G HPGG+ GL+FA KG L VG+NGMASEM +E G +I+EFKAS+K ISS
Sbjct: 90 NGEKKWVSAGCHPGGVIGLSFANKGCRLRTVGSNGMASEMDTETGNIIKEFKASKKSISS 149
Query: 121 SAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHL 180
SAF +E+ +A +++ILS ++G+E++ D +GP++ VS SD AK IIT+ G KHL
Sbjct: 150 SAFSLDERYLVVAGKKLKILSTDDGDELIVHPDKLGPVKLVSVSDDAKTIITSELGAKHL 209
Query: 181 QVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240
QVW C+IS+ ++GP LSM+H P +C+N N ED V+L+V+ SG AY W LK +S+
Sbjct: 210 QVWWCNISAGKFSRGPILSMKHPPFVSECRNVSNQEDSVVVLSVSVSGAAYLWKLKVLSE 269
Query: 241 DEKTNPAKITVKLKKADADQQNSVNVKKSRTSIIAARLN 279
DE T P K++VK + ++N + KK+R S++A+R++
Sbjct: 270 DEVT-PTKVSVKANDNQSAEENHGSAKKNRASVLASRIH 307
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482669|ref|XP_003632804.1| PREDICTED: uncharacterized WD repeat-containing protein all2124-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 119/192 (61%), Positives = 152/192 (79%), Gaps = 1/192 (0%)
Query: 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGT-LLLALGTSNGDILAVDV 59
IW+T+ SL+AEWK PD + + YSC+ C FVGKKRRKERG LLLAL T++G+IL VD+
Sbjct: 32 IWNTSYQSLVAEWKGPDVDSGIGYSCMTCSFVGKKRRKERGACLLLALVTNDGNILVVDI 91
Query: 60 LTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPIS 119
GEMKW+S+ HPGG+ GL+FA KGR LHVVGTNGM S +KSE GE+I EFKAS+KPIS
Sbjct: 92 FAGEMKWESSRYHPGGIVGLSFANKGRILHVVGTNGMVSTLKSENGELIGEFKASKKPIS 151
Query: 120 SSAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKH 179
S AF +EKI A+A S++R+LSLENG+E+LKF DD+ +Q + S+ A I+T+G+GEKH
Sbjct: 152 SLAFSSDEKILAIAGSKIRVLSLENGKELLKFPDDLESVQSIWISNDANTIVTSGFGEKH 211
Query: 180 LQVWRCDISSKT 191
LQVW CD++ KT
Sbjct: 212 LQVWNCDLNRKT 223
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147767919|emb|CAN62455.1| hypothetical protein VITISV_028174 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/254 (50%), Positives = 167/254 (65%), Gaps = 31/254 (12%)
Query: 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGT-LLLALGTSNGDILAVDV 59
IW+T+ SL+AEWK PD + +SYSC+ C FVGKKRRKE G LLLAL T++G IL VD+
Sbjct: 32 IWNTSYQSLVAEWKGPDVDSSISYSCMTCSFVGKKRRKEHGACLLLALVTNDGSILVVDI 91
Query: 60 LTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPIS 119
GEMKW+S+ HPGG+ GL+FA KGR LHVVGTNGM S +KSE GE+IREFKAS+KPIS
Sbjct: 92 FAGEMKWESSRYHPGGIVGLSFANKGRILHVVGTNGMVSTLKSENGELIREFKASKKPIS 151
Query: 120 SSAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKH 179
S AF +EKI A+A S++R+LSLENG+E+LKF +D+ +Q + S+ A I+T
Sbjct: 152 SLAFSSDEKILAIAGSKIRVLSLENGKELLKFPNDLEFVQSIWISNDANTIVT------- 204
Query: 180 LQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239
H P +CK+ N + G VIL+V+ G+AY W+LKT S
Sbjct: 205 ----------------------HPPAVFECKHGWNEDGGLVILSVSSLGIAYLWNLKTTS 242
Query: 240 QDEKTNPAKITVKL 253
+ NP KI + L
Sbjct: 243 A-QGYNPTKIMLLL 255
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147856060|emb|CAN80733.1| hypothetical protein VITISV_024551 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 135/201 (67%), Gaps = 27/201 (13%)
Query: 49 TSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVI 108
T++G IL V++ GEMKW+S+G HPGG+ L+FA KGR LHVVGTNGM
Sbjct: 165 TNDGSILVVNIFAGEMKWESSGYHPGGIVRLSFANKGRILHVVGTNGM------------ 212
Query: 109 REFKASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAK 168
F ++KI A+ASS++R+LSLENG+E+LKF DD+ +Q + S+ A
Sbjct: 213 --------------FFRDKKILAIASSKIRVLSLENGKELLKFPDDLESVQSIWISNDAN 258
Query: 169 IIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESG 228
I+T+G+GEKHLQVW D++SKT++KG LSM+H PV +CK+ N +DG VIL+V+ SG
Sbjct: 259 TIVTSGFGEKHLQVWNYDLNSKTISKGHVLSMKHLPVVFECKHGWNEDDGLVILSVSSSG 318
Query: 229 VAYSWDLKTVSQDEKTNPAKI 249
+ Y W+LKT + ++ NP KI
Sbjct: 319 ITYLWNLKT-TLAQRYNPTKI 338
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115438873|ref|NP_001043716.1| Os01g0649000 [Oryza sativa Japonica Group] gi|55296883|dbj|BAD68336.1| unknown protein [Oryza sativa Japonica Group] gi|113533247|dbj|BAF05630.1| Os01g0649000 [Oryza sativa Japonica Group] gi|125571385|gb|EAZ12900.1| hypothetical protein OsJ_02821 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 165/285 (57%), Gaps = 14/285 (4%)
Query: 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL 60
+W T G ++ W P P SYSC+AC V KK +K+ +L+A+GT+NG +L +D
Sbjct: 34 VWRTGGGEIIEGWTDPISAPDDSYSCIACCSVQKKHKKDGNLILVAVGTTNGQVLVLDS- 92
Query: 61 TGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS 120
TG + WK+ H + L FA+ GR L+ G +G+ E+ S GE KA++KPI+S
Sbjct: 93 TGVI-WKN-APHTCKVVSLHFARHGRVLYTAGMDGIICELNSRTGESKDTIKATKKPINS 150
Query: 121 SAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHL 180
+EK ++S R+ S+ +E+L+ DVGP+Q +S SD + +++ K +
Sbjct: 151 FTLSHDEKFMGVSSKITRLFSVSEKKEILRIPSDVGPVQLMSVSDDGRFLVSHVDNNKEV 210
Query: 181 QVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240
QVW CD +S T+ +L+M++ P ++C S + DG ++LAV++ GVA+ W L+T+SQ
Sbjct: 211 QVWSCDQNSCTIVSTASLTMQNQPKIVECTRSTSYGDGGIVLAVSKKGVAHVWHLQTLSQ 270
Query: 241 DEKTNPAKITVKLKKADADQQNSVNVKKSRTSIIAARLNDLEADG 285
+E P KI+VK NS++ KK R II+A+L D D
Sbjct: 271 NE-VLPTKISVK---------NSLD-KKGRIPIISAKLCDTNEDN 304
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125527065|gb|EAY75179.1| hypothetical protein OsI_03069 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 165/285 (57%), Gaps = 14/285 (4%)
Query: 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL 60
+W T G ++ W P P SYSC+AC V KK +K+ +L+A+GT+NG +L +D
Sbjct: 34 VWRTGGGEIIEGWTDPISAPDDSYSCIACCSVQKKHKKDGNLILVAVGTTNGQVLVLDS- 92
Query: 61 TGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS 120
TG + WK+ H + L FA+ GR L+ G +G+ E+ S GE KA++KPI+S
Sbjct: 93 TGVI-WKN-APHTCKVVSLHFARHGRVLYTAGMDGIICELNSRTGESKDTIKATKKPINS 150
Query: 121 SAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHL 180
+EK ++S R+ S+ +E+L+ DVGP+Q +S SD + +++ K +
Sbjct: 151 FTLSHDEKFMGVSSKITRLFSVSEKKEILRIPSDVGPVQLMSVSDDGRFLVSHVDNNKEV 210
Query: 181 QVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240
QVW CD +S T+ +L+M++ P ++C S + DG ++LAV++ GVA+ W L+T+SQ
Sbjct: 211 QVWSCDQNSCTIVSTASLTMQNQPKIVECTRSTSYGDGGIVLAVSKKGVAHVWHLQTLSQ 270
Query: 241 DEKTNPAKITVKLKKADADQQNSVNVKKSRTSIIAARLNDLEADG 285
+E P KI+VK NS++ KK R II+A+L D D
Sbjct: 271 NE-VLPTKISVK---------NSLD-KKGRIPIISAKLCDTNEDN 304
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 340 | ||||||
| TAIR|locus:2147972 | 615 | AT5G11240 "AT5G11240" [Arabido | 0.808 | 0.447 | 0.293 | 3.2e-31 | |
| ZFIN|ZDB-GENE-021231-3 | 650 | wdr43 "WD repeat domain 43" [D | 0.820 | 0.429 | 0.247 | 0.00016 |
| TAIR|locus:2147972 AT5G11240 "AT5G11240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 3.2e-31, P = 3.2e-31
Identities = 84/286 (29%), Positives = 150/286 (52%)
Query: 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL 60
I ST + ++ K G V Y+C+ + KK++++ GT +L LGT GD+LA+DV
Sbjct: 46 IASTEETNIYT--KVGKGHLSVDYTCMKWLSLEKKKKRKLGTSVLVLGTGGGDVLALDVA 103
Query: 61 TGEMKWKSTGRHPXXXXXXXXXXXXRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS 120
+G++KW+ + HP ++ G +GM ++ G +IR+FKAS K +SS
Sbjct: 104 SGQLKWRISDCHPGGVNAVSSSAKASCIYSGGADGMVCQIDPHSGNLIRKFKASTKTVSS 163
Query: 121 SAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHL 180
+ KI AS++++ + + +++ KF+ G ++ V+ ++ K ++++ GE+++
Sbjct: 164 LCVSPDGKILVTASTQLKTFNCSDLKKIQKFTGHPGVVRCVAFTEDGKYVLSSAVGERYI 223
Query: 181 QVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240
VW+ D +K + L++ H PV +D N E G +LA++E GV Y W V +
Sbjct: 224 AVWKTD-GAKKQSASCVLALEHPPVFVDSWGETN-EKGLYVLAISEIGVCYFWYGSNVEE 281
Query: 241 DEKTNPAKITVKLKKADADQQNSVNVKKSRTSII-AARLNDLEADG 285
P K+ + A AD +S+ KS +I AA+L + G
Sbjct: 282 LCNATPTKVAL----ATAD--SSLKPYKSSLPLIFAAKLQGILKPG 321
|
|
| ZFIN|ZDB-GENE-021231-3 wdr43 "WD repeat domain 43" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 76/307 (24%), Positives = 124/307 (40%)
Query: 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLA---CGFVG----KKRRK-------ERGTLLLA 46
IW+T +L E+ P + +C+ C V +KRRK E+ LL A
Sbjct: 33 IWNTESKTLQQEYV-PSAHLSAACTCVTWGPCRAVQEVPQRKRRKCDAASSAEQSDLL-A 90
Query: 47 LGTSNGDILAVDVLTGEMKWKSTGRHPXXXXXXXXXXXXRSLHVVGTNGMASEMKSEMGE 106
LGT+ G IL L G++ G H L+ + +E + G+
Sbjct: 91 LGTAAGTILIYSTLKGDLHCTLDGGHSGPVNSVQWHPEDSVLYSGSDDTHIAEWDLKTGK 150
Query: 107 VIREFKASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKF---SDDVGPLQYVSA 163
V ++KA ISS + K+ A +++ LE E KF S V L + +
Sbjct: 151 VCCKWKADRSAISSLCISPDGKMLLSAGMTIKMWDLETKEVYRKFTGHSTMVTTLCFATT 210
Query: 164 ----SDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGT 219
S+G + A + ++ L VW+ K N + ++ P ID + S N +D
Sbjct: 211 RPPDSNGMYFLSGAVH-DRLLSVWQVRSDGKDKNSVVSFTLTDEPQHIDLQTS-NSKDEA 268
Query: 220 VILAVA-ESGVAYSWDLKTVSQDEKTNPAKITVKLKKADADQQNSVNVKKSRTSIIAARL 278
V LAV + G + ++ Q +K P L+ + ++ V V ++ A R
Sbjct: 269 VRLAVVCKDGQLHLFEHFLNGQCKK--PLSPACSLQVSTMKGESPVPVPLLAAALCADRQ 326
Query: 279 NDLEADG 285
N + A G
Sbjct: 327 NLMLAYG 333
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.128 0.360 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 340 328 0.00088 116 3 11 23 0.48 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 615 (65 KB)
Total size of DFA: 221 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.64u 0.12s 30.76t Elapsed: 00:00:02
Total cpu time: 30.64u 0.12s 30.76t Elapsed: 00:00:02
Start: Thu May 9 21:28:44 2013 End: Thu May 9 21:28:46 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 340 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 18/199 (9%)
Query: 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSE 103
LLA G+ +G I D+ TGE+ G H G + +A + G L ++ E
Sbjct: 23 LLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81
Query: 104 MGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSDDVGPLQYV 161
GE +R +SS AF + +I + +S +++ +E G+ + + V
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141
Query: 162 SASDGAKIIITAGYGEKHLQVWRCDISS---KTVNKGPALSMRHSPVAIDCKNSPNGEDG 218
+ S + + + +++W D+ + G + SP+GE
Sbjct: 142 AFS-PDGTFVASSSQDGTIKLW--DLRTGKCVATLTGHTGEVNS------VAFSPDGEK- 191
Query: 219 TVILAVAESGVAYSWDLKT 237
+L+ + G WDL T
Sbjct: 192 --LLSSSSDGTIKLWDLST 208
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 340 | |||
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.98 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.95 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.93 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.93 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.93 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.93 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.92 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.92 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.92 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.91 | |
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.91 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.9 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.9 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.89 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.89 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.89 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.89 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.89 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.88 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.88 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.88 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.88 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.87 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.87 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.87 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.86 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.86 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.86 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.85 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.84 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.84 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.84 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.84 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.84 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.81 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.81 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.81 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.8 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.79 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.79 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.79 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.78 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.78 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.77 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.77 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.76 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.76 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.76 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.76 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.76 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.76 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.75 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.74 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.74 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.74 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.73 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.73 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.73 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.72 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.71 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.71 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.71 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.7 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.7 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.69 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.68 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.67 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.67 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.66 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.66 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.66 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.66 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.65 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.65 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.65 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.65 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.64 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.62 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.62 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.62 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.6 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.6 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.59 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.59 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.59 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.56 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.56 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.54 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.54 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.53 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.52 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.52 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.51 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.5 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.5 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.5 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.49 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.49 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.47 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.47 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.46 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.46 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.45 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.44 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.43 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.41 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.41 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.38 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.34 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.33 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.33 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.32 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.32 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.3 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.29 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.26 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.26 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.25 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.25 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.23 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.22 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.22 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.21 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.21 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.19 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.18 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.15 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.12 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.1 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.09 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.08 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.08 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.01 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.01 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.99 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.97 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.97 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.96 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.95 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.93 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.92 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.91 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.91 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.87 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.86 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.86 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.85 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.85 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.84 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.84 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.83 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.81 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.8 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.78 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.77 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.76 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.75 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.75 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.7 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.7 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.69 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.68 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.67 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.65 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.64 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.64 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.62 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.6 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.59 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.58 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.56 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.55 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.54 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.53 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.53 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.53 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.52 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.51 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.49 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.47 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.46 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.4 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.39 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.39 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.37 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.36 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.33 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.27 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.22 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.2 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.19 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.19 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.15 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.14 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.13 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.08 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.07 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.06 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.05 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.04 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.03 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.02 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.0 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 98.0 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.99 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.98 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.97 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.96 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.93 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.88 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.84 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.83 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.8 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.78 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.76 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.76 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.76 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.75 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.75 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.72 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.7 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.68 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.67 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.67 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.67 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.66 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.65 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.63 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.62 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.62 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.61 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.6 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.59 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.53 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.5 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.48 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.34 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.24 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.24 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.2 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.19 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.19 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.12 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.09 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.06 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.96 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.92 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.91 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.9 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.89 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.79 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.77 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.73 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.68 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.61 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.56 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.5 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.46 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.39 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.38 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.37 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.36 | |
| PRK10115 | 686 | protease 2; Provisional | 96.33 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.27 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.96 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.92 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.9 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.9 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.87 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.76 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.75 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.69 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.68 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.62 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.53 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.36 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 95.34 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.29 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 95.14 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.13 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.92 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.85 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.77 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.59 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.58 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.54 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.43 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.39 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.35 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.17 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 94.06 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.01 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.9 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.77 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.77 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 93.7 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.7 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.68 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 93.64 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.54 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 93.48 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.45 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.02 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.91 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 92.79 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.5 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.36 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.33 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 92.22 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 91.69 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 91.69 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.65 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 91.63 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.55 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 91.4 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 91.38 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.26 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 90.92 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 90.9 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 90.71 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 90.45 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 90.37 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.29 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 90.25 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 90.17 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 90.08 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 89.44 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 89.34 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 89.2 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 89.19 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 89.13 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 88.98 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 88.12 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.93 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 87.85 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 87.76 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 87.69 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 87.64 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 87.61 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 87.44 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 86.45 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 86.44 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 86.07 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 86.04 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 85.44 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 84.98 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 84.8 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 84.5 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 84.38 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 84.35 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 84.11 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 83.74 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 83.51 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 83.18 | |
| KOG0918 | 476 | consensus Selenium-binding protein [Inorganic ion | 82.83 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 82.74 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 82.47 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 82.39 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 81.5 | |
| PRK10115 | 686 | protease 2; Provisional | 81.31 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 81.02 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 80.67 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 80.2 |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=251.74 Aligned_cols=225 Identities=15% Similarity=0.174 Sum_probs=201.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeecc--ccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFV--GKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~ 78 (340)
||+..++..+..|. +|...|.++.|+|. +. -+|+|+.||++++|++.+...+..+.+ |...|..
T Consensus 201 vW~~~~~~~~~~l~----gH~~~v~~~~fhP~~~~~---------~lat~s~Dgtvklw~~~~e~~l~~l~g-H~~RVs~ 266 (459)
T KOG0272|consen 201 VWSVPQCNLLQTLR----GHTSRVGAAVFHPVDSDL---------NLATASADGTVKLWKLSQETPLQDLEG-HLARVSR 266 (459)
T ss_pred EeecCCcceeEEEe----ccccceeeEEEccCCCcc---------ceeeeccCCceeeeccCCCcchhhhhc-chhhhee
Confidence 68999999999998 99999999999998 34 699999999999999999888999999 9999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCC
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVG 156 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~ 156 (340)
++|+|+|++|.|++.|.+-++||+.++..+....+|..+|.+++|.|||..+++++-+ -+|||+++|+.+..+.+|..
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k 346 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK 346 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence 9999999999999999999999999999988899999999999999999999998887 89999999999999999999
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.|.++.|+|+|..+++++. |++++|||++. ......+. .|...+..+ .+....|.+|++++.|++++||...
T Consensus 347 ~I~~V~fsPNGy~lATgs~-Dnt~kVWDLR~--r~~ly~ip---AH~nlVS~V--k~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSS-DNTCKVWDLRM--RSELYTIP---AHSNLVSQV--KYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred ceeeEeECCCceEEeecCC-CCcEEEeeecc--cccceecc---cccchhhhe--EecccCCeEEEEcccCcceeeecCC
Confidence 9999999999998999777 99999999963 22233333 677777777 6623489999999999999999999
Q ss_pred CCCccCCCCCc
Q 036605 237 TVSQDEKTNPA 247 (340)
Q Consensus 237 ~~~~~~~~~p~ 247 (340)
+...+..+..+
T Consensus 419 ~~~~~ksLaGH 429 (459)
T KOG0272|consen 419 TWSPLKSLAGH 429 (459)
T ss_pred CcccchhhcCC
Confidence 98887766653
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=244.16 Aligned_cols=211 Identities=19% Similarity=0.242 Sum_probs=194.8
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+|++++...+..+. +|...|..++|+|+|+ +|++++.|.+-++||+.++..+....+ |...|.+++
T Consensus 245 lw~~~~e~~l~~l~----gH~~RVs~VafHPsG~---------~L~TasfD~tWRlWD~~tk~ElL~QEG-Hs~~v~~ia 310 (459)
T KOG0272|consen 245 LWKLSQETPLQDLE----GHLARVSRVAFHPSGK---------FLGTASFDSTWRLWDLETKSELLLQEG-HSKGVFSIA 310 (459)
T ss_pred eeccCCCcchhhhh----cchhhheeeeecCCCc---------eeeecccccchhhcccccchhhHhhcc-cccccceeE
Confidence 68888888888888 8999999999999999 999999999999999999987776677 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v 158 (340)
|++||.++++||.|..-+|||+++|+.+..+.+|..+|.+++|+|+|..+++++++ ++|||++....+..+.+|..-|
T Consensus 311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlV 390 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLV 390 (459)
T ss_pred ecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchh
Confidence 99999999999999999999999999999999999999999999999999997666 9999999999999999999999
Q ss_pred EEEEECC-CCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 159 QYVSASD-GAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 159 ~~~~~s~-~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
+.+.|+| .|.+|++++. |++++||.- .+......+. +|...++.+ .. ++++.++++++.|.++++|.
T Consensus 391 S~Vk~~p~~g~fL~Tasy-D~t~kiWs~--~~~~~~ksLa---GHe~kV~s~--Di-s~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTASY-DNTVKIWST--RTWSPLKSLA---GHEGKVISL--DI-SPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hheEecccCCeEEEEccc-CcceeeecC--CCcccchhhc---CCccceEEE--Ee-ccCCceEEEeccCceeeecc
Confidence 9999998 6788888887 999999997 5666677777 899888877 55 89999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=230.03 Aligned_cols=223 Identities=17% Similarity=0.215 Sum_probs=194.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE-EecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW-KSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~-~~~~~h~~~v~~v 79 (340)
+||+.+.....+.+ +|..-|.|++|+|||+ .||+|+.||+|++||.++|+.+. .+.+ |...|+++
T Consensus 141 ~WD~~TeTp~~t~K----gH~~WVlcvawsPDgk---------~iASG~~dg~I~lwdpktg~~~g~~l~g-H~K~It~L 206 (480)
T KOG0271|consen 141 LWDLDTETPLFTCK----GHKNWVLCVAWSPDGK---------KIASGSKDGSIRLWDPKTGQQIGRALRG-HKKWITAL 206 (480)
T ss_pred eeccCCCCcceeec----CCccEEEEEEECCCcc---------hhhccccCCeEEEecCCCCCcccccccC-cccceeEE
Confidence 69999999998888 9999999999999999 89999999999999999998654 5566 99999999
Q ss_pred EEec-----CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEee
Q 036605 80 AFAK-----KGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFS 152 (340)
Q Consensus 80 ~~~~-----~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~ 152 (340)
+|.| ..++|++++.||.|++||+..+..+..+.+|..+|+|+.|-.+| ++++++.+ |++|+...|...+.+.
T Consensus 207 awep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lk 285 (480)
T KOG0271|consen 207 AWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELK 285 (480)
T ss_pred eecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhc
Confidence 9976 56789999999999999999999999999999999999998766 55665544 9999999999999999
Q ss_pred cCCCCeEEEEECCC-----------CC-------------------------EEEEEEcCCCeEEEEEccCCCCCccCCc
Q 036605 153 DDVGPLQYVSASDG-----------AK-------------------------IIITAGYGEKHLQVWRCDISSKTVNKGP 196 (340)
Q Consensus 153 ~~~~~v~~~~~s~~-----------~~-------------------------~l~s~~~~d~~i~iwd~~~~~~~~~~~~ 196 (340)
+|...|+.++++.+ ++ .+++++. |.++.+|+-. ..++.+...
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD-d~tlflW~p~-~~kkpi~rm 363 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD-DFTLFLWNPF-KSKKPITRM 363 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC-CceEEEeccc-ccccchhhh
Confidence 99999999988622 33 4888777 9999999963 233344455
Q ss_pred eeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 197 ALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
. +|...+..+ .| +||+.++++++-|..|++|+..+++.+..++.
T Consensus 364 t---gHq~lVn~V--~f-SPd~r~IASaSFDkSVkLW~g~tGk~lasfRG 407 (480)
T KOG0271|consen 364 T---GHQALVNHV--SF-SPDGRYIASASFDKSVKLWDGRTGKFLASFRG 407 (480)
T ss_pred h---chhhheeeE--EE-CCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence 5 888888888 88 99999999999999999999999999987775
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=249.05 Aligned_cols=214 Identities=15% Similarity=0.192 Sum_probs=194.5
Q ss_pred CCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecC
Q 036605 5 NDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKK 84 (340)
Q Consensus 5 ~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~ 84 (340)
.++....++. +|+++|....|+|+.+ +|++++.|++|++|.+.+...+..+.+ |..+|.++.|+|.
T Consensus 439 ~~~~~~~~L~----GH~GPVyg~sFsPd~r---------fLlScSED~svRLWsl~t~s~~V~y~G-H~~PVwdV~F~P~ 504 (707)
T KOG0263|consen 439 DSSGTSRTLY----GHSGPVYGCSFSPDRR---------FLLSCSEDSSVRLWSLDTWSCLVIYKG-HLAPVWDVQFAPR 504 (707)
T ss_pred cCCceeEEee----cCCCceeeeeeccccc---------ceeeccCCcceeeeecccceeEEEecC-CCcceeeEEecCC
Confidence 3444445565 8999999999999999 999999999999999999998888997 9999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEE
Q 036605 85 GRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVS 162 (340)
Q Consensus 85 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~ 162 (340)
|-+++|++.|++-++|......+++.+.+|-..|.|+.|+|+..++++++.+ +++||..+|..++.|.+|.++|.+++
T Consensus 505 GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~ 584 (707)
T KOG0263|consen 505 GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALA 584 (707)
T ss_pred ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999997655 99999999999999999999999999
Q ss_pred ECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 036605 163 ASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 163 ~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
|+|+|++|++++. |+.|.+||+ ..+.....+. +|...+..+ .| +.+|..|++|+.|..|++||+......
T Consensus 585 ~Sp~Gr~LaSg~e-d~~I~iWDl--~~~~~v~~l~---~Ht~ti~Sl--sF-S~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 585 FSPCGRYLASGDE-DGLIKIWDL--ANGSLVKQLK---GHTGTIYSL--SF-SRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred EcCCCceEeeccc-CCcEEEEEc--CCCcchhhhh---cccCceeEE--EE-ecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999999999888 999999999 6667666666 787777777 77 899999999999999999999764433
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=208.10 Aligned_cols=222 Identities=16% Similarity=0.242 Sum_probs=186.1
Q ss_pred CccCCCCce--eeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEE
Q 036605 1 IWSTNDGSL--LAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~ 78 (340)
|||+.++.. +..|. +|...|+++.|..+|+ .+++|+.||+++|||++.....+.+. |..+|++
T Consensus 65 lyD~~S~np~Pv~t~e----~h~kNVtaVgF~~dgr---------WMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~ 129 (311)
T KOG0315|consen 65 LYDLNSNNPNPVATFE----GHTKNVTAVGFQCDGR---------WMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNT 129 (311)
T ss_pred EEEccCCCCCceeEEe----ccCCceEEEEEeecCe---------EEEecCCCceEEEEeccCcccchhcc--CCCCcce
Confidence 578877654 56776 8999999999999999 99999999999999999976666665 8899999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEe-ecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCC------ceeE
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSEMGEVIREF-KASEKPISSSAFLCEEKIFALASSE--VRILSLENG------EEVL 149 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~------~~~~ 149 (340)
+..+|+...|++|..+|.|++||+......+.+ .....+|.++.+.|||.+++.+... .++|++-+. +++.
T Consensus 130 vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~ 209 (311)
T KOG0315|consen 130 VVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH 209 (311)
T ss_pred EEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh
Confidence 999999999999999999999999887555543 3345689999999999999886554 999998654 3457
Q ss_pred EeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCC-CccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCC
Q 036605 150 KFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSK-TVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESG 228 (340)
Q Consensus 150 ~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg 228 (340)
+|+.|.+.+..+.+|||++||++++. |.+++||+.+ .- .....+. +|..++.++ .| +.|+.||++|+.|+
T Consensus 210 k~~ah~~~il~C~lSPd~k~lat~ss-dktv~iwn~~--~~~kle~~l~---gh~rWvWdc--~F-S~dg~YlvTassd~ 280 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLSPDVKYLATCSS-DKTVKIWNTD--DFFKLELVLT---GHQRWVWDC--AF-SADGEYLVTASSDH 280 (311)
T ss_pred heecccceEEEEEECCCCcEEEeecC-CceEEEEecC--CceeeEEEee---cCCceEEee--ee-ccCccEEEecCCCC
Confidence 78999999999999999999999888 9999999983 22 1112222 677888888 88 89999999999999
Q ss_pred cEEEEECCCCCccCCCCC
Q 036605 229 VAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 229 ~i~vwd~~~~~~~~~~~p 246 (340)
.+++|++..++++....+
T Consensus 281 ~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 281 TARLWDLSAGKEVRQYQG 298 (311)
T ss_pred ceeecccccCceeeecCC
Confidence 999999999887764444
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=210.22 Aligned_cols=219 Identities=16% Similarity=0.149 Sum_probs=185.4
Q ss_pred CCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEec
Q 036605 4 TNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAK 83 (340)
Q Consensus 4 ~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~ 83 (340)
...|..+..|+ +|+-.|+.++.++++. +.++++.|+++++||+.+++..+.|.+ |...|.+++|++
T Consensus 50 ~~~G~~~r~~~----GHsH~v~dv~~s~dg~---------~alS~swD~~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~ 115 (315)
T KOG0279|consen 50 IKYGVPVRRLT----GHSHFVSDVVLSSDGN---------FALSASWDGTLRLWDLATGESTRRFVG-HTKDVLSVAFST 115 (315)
T ss_pred cccCceeeeee----ccceEecceEEccCCc---------eEEeccccceEEEEEecCCcEEEEEEe-cCCceEEEEecC
Confidence 35677788888 8999999999999999 999999999999999999999999999 999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeecC-CCCeeEEEEccC--CCEEEEecCc--EEEEECCCCceeEEeecCCCCe
Q 036605 84 KGRSLHVVGTNGMASEMKSEMGEVIREFKAS-EKPISSSAFLCE--EKIFALASSE--VRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 84 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~i~~l~~~~~--~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v 158 (340)
|.+.+++|+.|.+|.+|+............. ..-|+|+.|+|+ ..++++++.+ |++||+++-+....+.+|.+.+
T Consensus 116 dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 116 DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV 195 (315)
T ss_pred CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE
Confidence 9999999999999999998765443333332 678999999998 6777775544 9999999999889999999999
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
+.+.+||||..+++++. ||.+.+||++ .++. ...+++...+..+ +| +|+...|+.+...+ |+|||+.+.
T Consensus 196 ~t~~vSpDGslcasGgk-dg~~~LwdL~--~~k~----lysl~a~~~v~sl--~f-spnrywL~~at~~s-IkIwdl~~~ 264 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGGK-DGEAMLWDLN--EGKN----LYSLEAFDIVNSL--CF-SPNRYWLCAATATS-IKIWDLESK 264 (315)
T ss_pred EEEEECCCCCEEecCCC-CceEEEEEcc--CCce----eEeccCCCeEeeE--Ee-cCCceeEeeccCCc-eEEEeccch
Confidence 99999999999999777 9999999994 3333 3444666677776 77 78877666666555 999999998
Q ss_pred CccCCCCCc
Q 036605 239 SQDEKTNPA 247 (340)
Q Consensus 239 ~~~~~~~p~ 247 (340)
..+..+++.
T Consensus 265 ~~v~~l~~d 273 (315)
T KOG0279|consen 265 AVVEELKLD 273 (315)
T ss_pred hhhhhcccc
Confidence 888877763
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=209.60 Aligned_cols=216 Identities=12% Similarity=0.145 Sum_probs=180.2
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-CCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-RHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~h~~~v~~v 79 (340)
+||+.+|+..+.|. +|...|.+++|+||.+ .+++|+.|.+|.+||+.... ..++.. .|.+-|.|+
T Consensus 89 lWDl~~g~~t~~f~----GH~~dVlsva~s~dn~---------qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscv 154 (315)
T KOG0279|consen 89 LWDLATGESTRRFV----GHTKDVLSVAFSTDNR---------QIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCV 154 (315)
T ss_pred EEEecCCcEEEEEE----ecCCceEEEEecCCCc---------eeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEE
Confidence 69999999999998 9999999999999998 89999999999999987664 444443 347889999
Q ss_pred EEecC--CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCC
Q 036605 80 AFAKK--GRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 80 ~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~ 155 (340)
+|+|+ ...+++++.|++|++||+++.+....+.+|...++.++++|||..+++++.+ +.+||+..++.+..+. |.
T Consensus 155 rfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~ 233 (315)
T KOG0279|consen 155 RFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AF 233 (315)
T ss_pred EEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CC
Confidence 99997 6789999999999999999999999999999999999999999999997766 9999999999877765 67
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCC----CeeeeeecCCCCCCCCEEEEEeCCCcEE
Q 036605 156 GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHS----PVAIDCKNSPNGEDGTVILAVAESGVAY 231 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~s~dg~i~ 231 (340)
..|.+++|+|+...| +.+. +..|+|||+ .++..+..+.+....+ .....+.+.| +++|..|++|-.|+.|+
T Consensus 234 ~~v~sl~fspnrywL-~~at-~~sIkIwdl--~~~~~v~~l~~d~~g~s~~~~~~~clslaw-s~dG~tLf~g~td~~ir 308 (315)
T KOG0279|consen 234 DIVNSLCFSPNRYWL-CAAT-ATSIKIWDL--ESKAVVEELKLDGIGPSSKAGDPICLSLAW-SADGQTLFAGYTDNVIR 308 (315)
T ss_pred CeEeeEEecCCceeE-eecc-CCceEEEec--cchhhhhhccccccccccccCCcEEEEEEE-cCCCcEEEeeecCCcEE
Confidence 899999999987544 4466 678999999 4554444333322211 1233444477 89999999999999999
Q ss_pred EEECC
Q 036605 232 SWDLK 236 (340)
Q Consensus 232 vwd~~ 236 (340)
+|.+.
T Consensus 309 v~qv~ 313 (315)
T KOG0279|consen 309 VWQVA 313 (315)
T ss_pred EEEee
Confidence 99874
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=218.92 Aligned_cols=226 Identities=13% Similarity=0.193 Sum_probs=192.8
Q ss_pred CccCCCCcee-eeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLL-AEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
+||+.+|+.+ ..+. +|...|++|+|.|-.. ...+.+||+++.||+|+|||+..+..+..+.+ |+.+|+|+
T Consensus 183 lwdpktg~~~g~~l~----gH~K~It~Lawep~hl----~p~~r~las~skDg~vrIWd~~~~~~~~~lsg-HT~~VTCv 253 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALR----GHKKWITALAWEPLHL----VPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG-HTASVTCV 253 (480)
T ss_pred EecCCCCCccccccc----CcccceeEEeeccccc----CCCccceecccCCCCEEEEEccCceEEEEecc-CccceEEE
Confidence 6999999876 4555 8999999999976532 11222899999999999999999999999998 99999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEc-----------cCCC--------------------
Q 036605 80 AFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFL-----------CEEK-------------------- 128 (340)
Q Consensus 80 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~-----------~~~~-------------------- 128 (340)
+|-.+ .++|+++.|++|++|+...|....++++|...|+.++.+ |.++
T Consensus 254 rwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 254 RWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred EEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 99743 499999999999999999999999999999999999877 2233
Q ss_pred -----EEEEecCc--EEEEECC-CCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeee
Q 036605 129 -----IFALASSE--VRILSLE-NGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSM 200 (340)
Q Consensus 129 -----~l~~~~~~--i~i~d~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 200 (340)
.+++++.+ +.+|+.. +.+++.+..+|..-|+.+.||||++|+++++. |..|++|+- .+++.+..+.
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF-DkSVkLW~g--~tGk~lasfR--- 406 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF-DKSVKLWDG--RTGKFLASFR--- 406 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec-ccceeeeeC--CCcchhhhhh---
Confidence 47776555 9999864 44577888999999999999999999999988 999999998 5788888777
Q ss_pred cCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCC
Q 036605 201 RHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTN 245 (340)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~ 245 (340)
+|...++.+ .| +.|..+|++|+.|.++++|++.+.+....+.
T Consensus 407 GHv~~VYqv--aw-saDsRLlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 407 GHVAAVYQV--AW-SADSRLLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred hccceeEEE--Ee-ccCccEEEEcCCCceEEEEEeeeeeecccCC
Confidence 898888888 88 8999999999999999999999877665343
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-31 Score=233.44 Aligned_cols=227 Identities=22% Similarity=0.289 Sum_probs=188.6
Q ss_pred CccCCCCc--eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEc-cCCeeEEEecCCCCCCeE
Q 036605 1 IWSTNDGS--LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDV-LTGEMKWKSTGRHPGGLA 77 (340)
Q Consensus 1 vwd~~~g~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~-~~~~~~~~~~~~h~~~v~ 77 (340)
+|++.++. ++.++. +|...|.+++|+|+++ ++++|+.|++|+|||+ ..+..+..+.+ |...|+
T Consensus 185 ~~~~~~~~~~~~~~l~----~h~~~v~~~~fs~d~~---------~l~s~s~D~tiriwd~~~~~~~~~~l~g-H~~~v~ 250 (456)
T KOG0266|consen 185 IWKLEGIKSNLLRELS----GHTRGVSDVAFSPDGS---------YLLSGSDDKTLRIWDLKDDGRNLKTLKG-HSTYVT 250 (456)
T ss_pred Eeecccccchhhcccc----ccccceeeeEECCCCc---------EEEEecCCceEEEeeccCCCeEEEEecC-CCCceE
Confidence 35665555 555553 8999999999999999 9999999999999999 55578889998 999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCc--eeEEeec
Q 036605 78 GLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGE--EVLKFSD 153 (340)
Q Consensus 78 ~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~--~~~~~~~ 153 (340)
+++|+|+++.+++|+.|+.|++||+++++.+..+.+|...|++++|++++.++++++.+ |++||+.++. .+..+..
T Consensus 251 ~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 330 (456)
T KOG0266|consen 251 SVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG 330 (456)
T ss_pred EEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC
Confidence 99999999999999999999999999999999999999999999999999999987655 9999999998 4566666
Q ss_pred CCCC--eEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEE
Q 036605 154 DVGP--LQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAY 231 (340)
Q Consensus 154 ~~~~--v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~ 231 (340)
+... ++.+.|+|++.+++++.. |+.+++||+ .......... .|.............+.+.++++|+.|+.|+
T Consensus 331 ~~~~~~~~~~~fsp~~~~ll~~~~-d~~~~~w~l--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~ 404 (456)
T KOG0266|consen 331 AENSAPVTSVQFSPNGKYLLSASL-DRTLKLWDL--RSGKSVGTYT---GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVY 404 (456)
T ss_pred CCCCCceeEEEECCCCcEEEEecC-CCeEEEEEc--cCCcceeeec---ccCCcceeEecccccCCCCeEEEEeCCceEE
Confidence 6655 999999999999999888 999999999 3443333333 3333222222222378999999999999999
Q ss_pred EEECCCCCccCCCCCc
Q 036605 232 SWDLKTVSQDEKTNPA 247 (340)
Q Consensus 232 vwd~~~~~~~~~~~p~ 247 (340)
+|+..++..+..++.+
T Consensus 405 ~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 405 VWDSSSGGILQRLEGH 420 (456)
T ss_pred EEeCCccchhhhhcCC
Confidence 9999997777756555
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=228.82 Aligned_cols=219 Identities=18% Similarity=0.263 Sum_probs=185.6
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
||+..+...+.... +|...++|+++||||+ ++|+|+.||.|+|||...|-+..++.. |+..|+.+.
T Consensus 334 VweWqsEsYVlKQQ----gH~~~i~~l~YSpDgq---------~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~ 399 (893)
T KOG0291|consen 334 VWEWQSESYVLKQQ----GHSDRITSLAYSPDGQ---------LIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQ 399 (893)
T ss_pred EEEeeccceeeecc----ccccceeeEEECCCCc---------EEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEE
Confidence 46665555444444 8999999999999999 999999999999999999999999999 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC-CCeeEEEEccCCCEEEEecCc---EEEEECCCCceeEEeecCCC
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASE-KPISSSAFLCEEKIFALASSE---VRILSLENGEEVLKFSDDVG 156 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~~~~---i~i~d~~~~~~~~~~~~~~~ 156 (340)
|+..|+.|++.+-||+|+.||+...+..++|.... ....|++..|.|..+..++.+ |++|++++|+.+-.+.+|++
T Consensus 400 f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg 479 (893)
T KOG0291|consen 400 FTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG 479 (893)
T ss_pred EEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC
Confidence 99999999999999999999999998888887543 346799999999999888777 99999999999999999999
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
+|.+++|+|++..|++++. |.+|++||+=...+ . .-++.....+..+ .+ .|+|..|++++-||.|.+||.+
T Consensus 480 PVs~l~f~~~~~~LaS~SW-DkTVRiW~if~s~~-~----vEtl~i~sdvl~v--sf-rPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 480 PVSGLSFSPDGSLLASGSW-DKTVRIWDIFSSSG-T----VETLEIRSDVLAV--SF-RPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred cceeeEEccccCeEEeccc-cceEEEEEeeccCc-e----eeeEeeccceeEE--EE-cCCCCeEEEEEecceEEEEEhh
Confidence 9999999999999999888 99999999831111 1 1112333334444 45 8999999999999999999998
Q ss_pred CCCccC
Q 036605 237 TVSQDE 242 (340)
Q Consensus 237 ~~~~~~ 242 (340)
...+..
T Consensus 551 ~~~q~~ 556 (893)
T KOG0291|consen 551 EAVQVG 556 (893)
T ss_pred hceeec
Confidence 866664
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=203.32 Aligned_cols=196 Identities=18% Similarity=0.225 Sum_probs=177.1
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEec-CCCEEEEEeCCCcE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAK-KGRSLHVVGTNGMA 97 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i 97 (340)
+|..-+.|+.|-+|+. |++|+.|.+..+||+++|+....|.+ |.+.|.+++++| +++.+++|+.|+..
T Consensus 143 gHtgylScC~f~dD~~----------ilT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~a 211 (343)
T KOG0286|consen 143 GHTGYLSCCRFLDDNH----------ILTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSA 211 (343)
T ss_pred CccceeEEEEEcCCCc----------eEecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCCCCCeEEecccccce
Confidence 8999999999998777 99999999999999999999999998 999999999999 99999999999999
Q ss_pred EEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeec--CCCCeEEEEECCCCCEEEEE
Q 036605 98 SEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSD--DVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~ 173 (340)
++||++.+..++.|.+|...|.++.|.|+|.-+++++.+ .++||++....+..|.. ...+|++++||-.|++|+++
T Consensus 212 klWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 212 KLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred eeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEee
Confidence 999999999999999999999999999999999997766 99999999988877753 34789999999999999997
Q ss_pred EcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 174 GYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
.. |..+.+||. -.++....+. +|...+..+ .. +|||.-|++|+.|..++||.
T Consensus 292 y~-d~~c~vWDt--lk~e~vg~L~---GHeNRvScl--~~-s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 292 YD-DFTCNVWDT--LKGERVGVLA---GHENRVSCL--GV-SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ec-CCceeEeec--cccceEEEee---ccCCeeEEE--EE-CCCCcEEEecchhHheeecC
Confidence 66 999999997 5555555555 888777655 44 89999999999999999994
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=197.45 Aligned_cols=221 Identities=12% Similarity=0.150 Sum_probs=184.6
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC------eeEEEecCCCCC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG------EMKWKSTGRHPG 74 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~------~~~~~~~~~h~~ 74 (340)
|||.-+.....-+. -...-|..++|+|.+. ++|.|+-|....||++.+. +..+.+.+ |.+
T Consensus 81 vWDs~TtnK~haip----l~s~WVMtCA~sPSg~---------~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~g-Htg 146 (343)
T KOG0286|consen 81 VWDSFTTNKVHAIP----LPSSWVMTCAYSPSGN---------FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAG-HTG 146 (343)
T ss_pred EEEcccccceeEEe----cCceeEEEEEECCCCC---------eEEecCcCceeEEEecccccccccceeeeeecC-ccc
Confidence 68887777666665 4568899999999999 9999999999999999865 24456777 999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEcc-CCCEEEEecCc--EEEEECCCCceeEEe
Q 036605 75 GLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLC-EEKIFALASSE--VRILSLENGEEVLKF 151 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~~--i~i~d~~~~~~~~~~ 151 (340)
.+.|+.|-+ ...|++++.|.++.+||+++|+.+..|.+|.+.|.+++++| +++.+++++-+ .++||++.+...+.|
T Consensus 147 ylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF 225 (343)
T KOG0286|consen 147 YLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF 225 (343)
T ss_pred eeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence 999999987 56889999999999999999999999999999999999999 89999986555 999999999999999
Q ss_pred ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeec-CCCCCCCCEEEEEeCCCcE
Q 036605 152 SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKN-SPNGEDGTVILAVAESGVA 230 (340)
Q Consensus 152 ~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~s~dg~i 230 (340)
.+|...|+++.|.|+|.-|++++. |++.++||+| ..+++..+. ++.....+.. .| +..|++|++|..|..+
T Consensus 226 ~ghesDINsv~ffP~G~afatGSD-D~tcRlyDlR--aD~~~a~ys----~~~~~~gitSv~F-S~SGRlLfagy~d~~c 297 (343)
T KOG0286|consen 226 EGHESDINSVRFFPSGDAFATGSD-DATCRLYDLR--ADQELAVYS----HDSIICGITSVAF-SKSGRLLFAGYDDFTC 297 (343)
T ss_pred cccccccceEEEccCCCeeeecCC-CceeEEEeec--CCcEEeeec----cCcccCCceeEEE-cccccEEEeeecCCce
Confidence 999999999999999999999777 9999999996 333333332 2222222211 44 8899999999999999
Q ss_pred EEEECCCCCccCCC
Q 036605 231 YSWDLKTVSQDEKT 244 (340)
Q Consensus 231 ~vwd~~~~~~~~~~ 244 (340)
.+||.-.++....+
T Consensus 298 ~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 298 NVWDTLKGERVGVL 311 (343)
T ss_pred eEeeccccceEEEe
Confidence 99998776655533
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-31 Score=211.18 Aligned_cols=232 Identities=16% Similarity=0.198 Sum_probs=204.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC-CeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT-GEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~h~~~v~~v 79 (340)
+||..+|++...++ +|...|..++|+..|+ +|++++.|=.+.+||..+ .+....+.+ |...|.++
T Consensus 134 v~D~~tg~~e~~Lr----GHt~sv~di~~~a~Gk---------~l~tcSsDl~~~LWd~~~~~~c~ks~~g-h~h~vS~V 199 (406)
T KOG0295|consen 134 VFDTETGELERSLR----GHTDSVFDISFDASGK---------YLATCSSDLSAKLWDFDTFFRCIKSLIG-HEHGVSSV 199 (406)
T ss_pred EEEccchhhhhhhh----ccccceeEEEEecCcc---------EEEecCCccchhheeHHHHHHHHHHhcC-cccceeeE
Confidence 59999999988888 8999999999999999 999999999999999887 345555666 99999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCC
Q 036605 80 AFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGP 157 (340)
Q Consensus 80 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~ 157 (340)
+|-|.|.++++++.|.+|+.|++.+|..+.+|.+|..-|..++.+.||.++++++.+ +++|-+.++.....+..|..+
T Consensus 200 ~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~ 279 (406)
T KOG0295|consen 200 FFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP 279 (406)
T ss_pred EEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence 999999999999999999999999999999999999999999999999999998877 999999999888889999999
Q ss_pred eEEEEECCC---------------CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEE
Q 036605 158 LQYVSASDG---------------AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVIL 222 (340)
Q Consensus 158 v~~~~~s~~---------------~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 222 (340)
|.+++|.|. +.++.+++. |++|++||+ +++..+..+. +|..++..+ ++ +|.|+||+
T Consensus 280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr-DktIk~wdv--~tg~cL~tL~---ghdnwVr~~--af-~p~Gkyi~ 350 (406)
T KOG0295|consen 280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSR-DKTIKIWDV--STGMCLFTLV---GHDNWVRGV--AF-SPGGKYIL 350 (406)
T ss_pred eEEEEecccccCcchhhccCCCCCccEEEeecc-cceEEEEec--cCCeEEEEEe---cccceeeee--EE-cCCCeEEE
Confidence 999999554 357777665 999999999 6776555555 899999888 88 89999999
Q ss_pred EEeCCCcEEEEECCCCCccCCCCCceEEEeecc
Q 036605 223 AVAESGVAYSWDLKTVSQDEKTNPAKITVKLKK 255 (340)
Q Consensus 223 ~~s~dg~i~vwd~~~~~~~~~~~p~~i~~~~~~ 255 (340)
++..|+++++||+++.+....+.++..-+...+
T Consensus 351 ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 351 SCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD 383 (406)
T ss_pred EEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence 999999999999999998887877554444443
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=224.72 Aligned_cols=216 Identities=16% Similarity=0.215 Sum_probs=190.0
Q ss_pred eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-------------------------
Q 036605 9 LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE------------------------- 63 (340)
Q Consensus 9 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~------------------------- 63 (340)
+.+++. .-...++|..|++|++ +||.|..|..|++|.+...+
T Consensus 370 c~YT~~----nt~~~v~ca~fSddss---------mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~ 436 (707)
T KOG0263|consen 370 CMYTFH----NTYQGVTCAEFSDDSS---------MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDML 436 (707)
T ss_pred EEEEEE----EcCCcceeEeecCCcc---------hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhc
Confidence 345555 3457899999999999 99999999999999876311
Q ss_pred ------eEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc-
Q 036605 64 ------MKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE- 136 (340)
Q Consensus 64 ------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~- 136 (340)
...++.+ |.++|..+.|+|+.++|++|+.|+++++|.+.+...+..+++|..+|+.+.|+|-|.++|+++++
T Consensus 437 D~~~~~~~~~L~G-H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~ 515 (707)
T KOG0263|consen 437 DDDSSGTSRTLYG-HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQ 515 (707)
T ss_pred cccCCceeEEeec-CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCc
Confidence 1233455 99999999999999999999999999999999999999999999999999999999999997666
Q ss_pred -EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCC
Q 036605 137 -VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNG 215 (340)
Q Consensus 137 -i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
.++|......+++.|.+|.+.|.++.|+|+..|+++++. |.++++||+ .++...+.+. +|...+..+ .+ +
T Consensus 516 tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs-D~tVRlWDv--~~G~~VRiF~---GH~~~V~al--~~-S 586 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSS-DRTVRLWDV--STGNSVRIFT---GHKGPVTAL--AF-S 586 (707)
T ss_pred eeeeeecccCCchhhhcccccccceEEECCcccccccCCC-CceEEEEEc--CCCcEEEEec---CCCCceEEE--EE-c
Confidence 999999999999999999999999999999999999877 999999999 6776666666 888888887 77 8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCccCCCCCc
Q 036605 216 EDGTVILAVAESGVAYSWDLKTVSQDEKTNPA 247 (340)
Q Consensus 216 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p~ 247 (340)
|+|.+|++|+.||.|.+||+.++..+..+..+
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H 618 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKGH 618 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCcchhhhhcc
Confidence 99999999999999999999998777655543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=191.52 Aligned_cols=223 Identities=16% Similarity=0.196 Sum_probs=195.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+||+..|.++.+|. +|..+|..++.+.|.. -+++|+.|..+.+||+.+|+..+++.+ |.+.|+.++
T Consensus 43 LWNp~rg~liktYs----ghG~EVlD~~~s~Dns---------kf~s~GgDk~v~vwDV~TGkv~Rr~rg-H~aqVNtV~ 108 (307)
T KOG0316|consen 43 LWNPLRGALIKTYS----GHGHEVLDAALSSDNS---------KFASCGGDKAVQVWDVNTGKVDRRFRG-HLAQVNTVR 108 (307)
T ss_pred eecccccceeeeec----CCCceeeecccccccc---------ccccCCCCceEEEEEcccCeeeeeccc-ccceeeEEE
Confidence 69999999999998 8999999999999986 699999999999999999999999999 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCC--eEEEEeecCCCCeeEEEEccCCCEEEEecCcEEEEECCCCceeEEeecCCCCe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMG--EVIREFKASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~~~~~~v 158 (340)
|+.+...+++|+.|..+++||-++. ++++.+......|.++.+....-...+.+++++.||++.|.....+-+ .+|
T Consensus 109 fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pi 186 (307)
T KOG0316|consen 109 FNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPI 186 (307)
T ss_pred ecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcC--Ccc
Confidence 9999999999999999999998764 577778888889999988754433344778899999999977665554 579
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
+++.|++|++..++++. |+++++.|- .+++.+.... +|....+.+.|++ ......+++|++||.|++||+...
T Consensus 187 t~vs~s~d~nc~La~~l-~stlrLlDk--~tGklL~sYk---Ghkn~eykldc~l-~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSL-DSTLRLLDK--ETGKLLKSYK---GHKNMEYKLDCCL-NQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eeEEecCCCCEEEEeec-cceeeeccc--chhHHHHHhc---ccccceeeeeeee-cccceeEEeccCCceEEEEEeccc
Confidence 99999999999999888 999999997 6788888887 8888888887888 677789999999999999999987
Q ss_pred CccCCCCC
Q 036605 239 SQDEKTNP 246 (340)
Q Consensus 239 ~~~~~~~p 246 (340)
.++..+..
T Consensus 260 ~~~sk~~~ 267 (307)
T KOG0316|consen 260 TQISKLSV 267 (307)
T ss_pred eeeeeecc
Confidence 77764443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=215.81 Aligned_cols=215 Identities=20% Similarity=0.312 Sum_probs=178.9
Q ss_pred CCCCCeEEEEeec-cccccccccCceEEEEEcCCCcEEEEEccC-CeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCc
Q 036605 19 EPVVSYSCLACGF-VGKKRRKERGTLLLALGTSNGDILAVDVLT-GEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGM 96 (340)
Q Consensus 19 ~~~~~v~~l~~sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~ 96 (340)
+|...|+++.|.| .+. +|++|+.|+.|+||++-. +++++++.+ |..+|.+++|+.+|..+++++.|+.
T Consensus 212 gH~kgvsai~~fp~~~h---------LlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGH---------LLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred CCccccchhhhccceee---------EEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCeeeeeeccee
Confidence 8999999999999 568 999999999999999987 789999999 9999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEeecCCCCeeEEEEccCC-CEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEE
Q 036605 97 ASEMKSEMGEVIREFKASEKPISSSAFLCEE-KIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 97 i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 173 (340)
|++||.++|+.+..|.. ...++|+.|+|++ +.+++|+.+ |+.||+++++.++.+..|-+.|..+.|-++|++++++
T Consensus 282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 99999999999998874 4567999999999 455554433 9999999999999999999999999999999999998
Q ss_pred EcCCCeEEEEEccCCCCCcc-------CCc---------------------eee-------------ecCCCeeeeeecC
Q 036605 174 GYGEKHLQVWRCDISSKTVN-------KGP---------------------ALS-------------MRHSPVAIDCKNS 212 (340)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~-------~~~---------------------~~~-------------~~~~~~~~~~~~~ 212 (340)
+. |+.++||+.+....-.. ... .+. .+|...-..+.+.
T Consensus 361 SD-dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 361 SD-DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred cc-CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 88 99999999854321000 000 000 0222223334445
Q ss_pred CCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 213 PNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 213 ~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
| +|||.+|++|+.||.+++||.++.+.+..++.
T Consensus 440 f-SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka 472 (503)
T KOG0282|consen 440 F-SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA 472 (503)
T ss_pred E-cCCCCeEEeecCCccEEEeechhhhhhhcccc
Confidence 6 99999999999999999999999888876655
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=215.89 Aligned_cols=207 Identities=14% Similarity=0.173 Sum_probs=165.3
Q ss_pred CCCCCeEEEEeec-cccccccccCceEEEEEcCCCcEEEEEccCCe-------eEEEecCCCCCCeEEEEEecCC-CEEE
Q 036605 19 EPVVSYSCLACGF-VGKKRRKERGTLLLALGTSNGDILAVDVLTGE-------MKWKSTGRHPGGLAGLAFAKKG-RSLH 89 (340)
Q Consensus 19 ~~~~~v~~l~~sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-------~~~~~~~~h~~~v~~v~~~~~~-~~l~ 89 (340)
+|...|++++|+| ++. +|++|+.||+|++||+.++. .+..+.+ |...|.+++|+|++ +.|+
T Consensus 73 GH~~~V~~v~fsP~d~~---------~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQ---------KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLA 142 (493)
T ss_pred CCCCCEEEEEEcCCCCC---------EEEEEeCCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEE
Confidence 7899999999999 778 89999999999999997652 3556777 99999999999975 6899
Q ss_pred EEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCC-eEEEEECCC
Q 036605 90 VVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGP-LQYVSASDG 166 (340)
Q Consensus 90 s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~-v~~~~~s~~ 166 (340)
+++.|+.|++||+.+++.+..+..|...|.+++|+|++.+|++++.+ |++||+++++.+..+.+|.+. +..+.|.++
T Consensus 143 Sgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 143 SAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred EEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence 99999999999999999988899999999999999999999886655 999999999988888888765 456788888
Q ss_pred CCEEEEEEc---CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEe-CCCcEEEEECCCCCcc
Q 036605 167 AKIIITAGY---GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVA-ESGVAYSWDLKTVSQD 241 (340)
Q Consensus 167 ~~~l~s~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s-~dg~i~vwd~~~~~~~ 241 (340)
+..+++++. .|+.|++||++... .... ............ ..+ ++++.+|++++ .||.|++||+.++...
T Consensus 223 ~~~ivt~G~s~s~Dr~VklWDlr~~~-~p~~--~~~~d~~~~~~~--~~~-d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 223 KDLIITLGCSKSQQRQIMLWDTRKMA-SPYS--TVDLDQSSALFI--PFF-DEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred CCeEEEEecCCCCCCeEEEEeCCCCC-Ccee--EeccCCCCceEE--EEE-cCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 888887663 37999999985221 1111 111112122211 234 78888888877 5999999999875543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=219.87 Aligned_cols=210 Identities=19% Similarity=0.271 Sum_probs=180.3
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCCCeEEEEEecCCCEEEEEeCCCc
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGM 96 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~ 96 (340)
++...|+|+.|+|+|+ ++++++.++.+++|+..+++ ....+.+ |...|.+++|+|+++++++++.|++
T Consensus 157 ~~~~sv~~~~fs~~g~---------~l~~~~~~~~i~~~~~~~~~~~~~~~l~~-h~~~v~~~~fs~d~~~l~s~s~D~t 226 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGR---------ALAAASSDGLIRIWKLEGIKSNLLRELSG-HTRGVSDVAFSPDGSYLLSGSDDKT 226 (456)
T ss_pred cccCceEEEEEcCCCC---------eEEEccCCCcEEEeecccccchhhccccc-cccceeeeEECCCCcEEEEecCCce
Confidence 5578999999999999 99999999999999997777 6667766 9999999999999999999999999
Q ss_pred EEEEeC-CCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEE
Q 036605 97 ASEMKS-EMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 97 i~~wd~-~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 173 (340)
|++||+ ..+..+..+.+|...|++++|+|+++++++++.+ |++||+++++.+..+.+|...|+.++|++++.+|+++
T Consensus 227 iriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 227 LRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred EEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 999999 5668889999999999999999999999887666 9999999999999999999999999999999999998
Q ss_pred EcCCCeEEEEEccCCCCCc--cCCceeeecCCCe--eeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCCc
Q 036605 174 GYGEKHLQVWRCDISSKTV--NKGPALSMRHSPV--AIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNPA 247 (340)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p~ 247 (340)
+. |+.|+|||+ .++.. ...+. .+... +..+ .| +|++.++++++.|+.+++||+..+.....+.+.
T Consensus 307 s~-d~~i~vwd~--~~~~~~~~~~~~---~~~~~~~~~~~--~f-sp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~ 375 (456)
T KOG0266|consen 307 SY-DGTIRVWDL--ETGSKLCLKLLS---GAENSAPVTSV--QF-SPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH 375 (456)
T ss_pred CC-CccEEEEEC--CCCceeeeeccc---CCCCCCceeEE--EE-CCCCcEEEEecCCCeEEEEEccCCcceeeeccc
Confidence 77 999999999 44442 12222 22222 2222 44 899999999999999999999987766655553
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=200.50 Aligned_cols=217 Identities=13% Similarity=0.207 Sum_probs=191.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.+|++..+++ +|-..|..+++|+-.. ||++++.|+.|..||++..+.++.+.+ |-..|.|++
T Consensus 177 IwDlatg~Lkltlt----Ghi~~vr~vavS~rHp---------YlFs~gedk~VKCwDLe~nkvIR~YhG-HlS~V~~L~ 242 (460)
T KOG0285|consen 177 IWDLATGQLKLTLT----GHIETVRGVAVSKRHP---------YLFSAGEDKQVKCWDLEYNKVIRHYHG-HLSGVYCLD 242 (460)
T ss_pred EEEcccCeEEEeec----chhheeeeeeecccCc---------eEEEecCCCeeEEEechhhhhHHHhcc-ccceeEEEe
Confidence 79999999999998 8999999999998887 999999999999999999999999998 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v 158 (340)
.+|.-..|++|+.|.++++||+++...+..+.+|..+|.++.+.|-...+++++.+ |++||+..|+....+..|...+
T Consensus 243 lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksv 322 (460)
T KOG0285|consen 243 LHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSV 322 (460)
T ss_pred ccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccccee
Confidence 99999999999999999999999999999999999999999999988888786655 9999999999999999999999
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.+++.+|....+++++. ..|+-|++ ..+.....+. +|...+..+ .. ....++++|+..|.+.+||.+++
T Consensus 323 ral~lhP~e~~fASas~--dnik~w~~--p~g~f~~nls---gh~~iintl--~~--nsD~v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 323 RALCLHPKENLFASASP--DNIKQWKL--PEGEFLQNLS---GHNAIINTL--SV--NSDGVLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred eEEecCCchhhhhccCC--ccceeccC--Cccchhhccc---cccceeeee--ee--ccCceEEEcCCceEEEEEecCcC
Confidence 99999999877777544 67899999 6666666555 666666655 22 34467899999999999999986
Q ss_pred CccC
Q 036605 239 SQDE 242 (340)
Q Consensus 239 ~~~~ 242 (340)
....
T Consensus 392 ~nyQ 395 (460)
T KOG0285|consen 392 HNYQ 395 (460)
T ss_pred cccc
Confidence 5544
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=201.43 Aligned_cols=209 Identities=15% Similarity=0.200 Sum_probs=185.0
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
.+|.+-|.|+++.|.+. +|++|+.|++|.|||+.+|++..++.+ |...|..+++++...+|++++.|+.|
T Consensus 148 ~gHlgWVr~vavdP~n~---------wf~tgs~DrtikIwDlatg~LkltltG-hi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNE---------WFATGSADRTIKIWDLATGQLKLTLTG-HIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred hhccceEEEEeeCCCce---------eEEecCCCceeEEEEcccCeEEEeecc-hhheeeeeeecccCceEEEecCCCee
Confidence 48999999999999989 999999999999999999999999999 99999999999999999999999999
Q ss_pred EEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 98 SEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
+.||++..+.++.+.+|-+.|.|++.+|.-..|++++++ +++||+++...+..+.+|..+|..+.+.|....+++++.
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 999999999999999999999999999999999998887 999999999999999999999999999998889999777
Q ss_pred CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 176 GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
|++|++||++ .++...... .|...+..+ +. +|....+++++.|. |+-|++..+..+.++..
T Consensus 298 -D~tvrlWDl~--agkt~~tlt---~hkksvral--~l-hP~e~~fASas~dn-ik~w~~p~g~f~~nlsg 358 (460)
T KOG0285|consen 298 -DSTVRLWDLR--AGKTMITLT---HHKKSVRAL--CL-HPKENLFASASPDN-IKQWKLPEGEFLQNLSG 358 (460)
T ss_pred -CceEEEeeec--cCceeEeee---cccceeeEE--ec-CCchhhhhccCCcc-ceeccCCccchhhcccc
Confidence 9999999994 443333332 455555544 44 78878888888887 99999998877775443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=206.81 Aligned_cols=205 Identities=17% Similarity=0.250 Sum_probs=178.2
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMK 101 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd 101 (340)
..||+|+|+.+|. +||+|+.||.++||+.. |.++..+.. |.++|.++.|+.+|.+|++++.|+++.+||
T Consensus 236 kdVT~L~Wn~~G~---------~LatG~~~G~~riw~~~-G~l~~tl~~-HkgPI~slKWnk~G~yilS~~vD~ttilwd 304 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT---------LLATGSEDGEARIWNKD-GNLISTLGQ-HKGPIFSLKWNKKGTYILSGGVDGTTILWD 304 (524)
T ss_pred CCcceEEecCCCC---------eEEEeecCcEEEEEecC-chhhhhhhc-cCCceEEEEEcCCCCEEEeccCCccEEEEe
Confidence 6799999999999 99999999999999954 667778887 999999999999999999999999999999
Q ss_pred CCCCeE-----------------------------------------EEEeecCCCCeeEEEEccCCCEEEEecCc--EE
Q 036605 102 SEMGEV-----------------------------------------IREFKASEKPISSSAFLCEEKIFALASSE--VR 138 (340)
Q Consensus 102 ~~~~~~-----------------------------------------~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~ 138 (340)
..+|.. +.++.+|..+|.++.|.|.+.+|++++.+ ++
T Consensus 305 ~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 305 AHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLK 384 (524)
T ss_pred ccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeE
Confidence 865532 23456788999999999999999997665 99
Q ss_pred EEECCCCceeEEeecCCCCeEEEEECCC---------CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeee
Q 036605 139 ILSLENGEEVLKFSDDVGPLQYVSASDG---------AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDC 209 (340)
Q Consensus 139 i~d~~~~~~~~~~~~~~~~v~~~~~s~~---------~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (340)
||..........+..|...|..+.|+|+ +..+++++. |++|++||+ ..+..+..+. .|...+.++
T Consensus 385 iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~-dstV~lwdv--~~gv~i~~f~---kH~~pVysv 458 (524)
T KOG0273|consen 385 IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF-DSTVKLWDV--ESGVPIHTLM---KHQEPVYSV 458 (524)
T ss_pred eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec-CCeEEEEEc--cCCceeEeec---cCCCceEEE
Confidence 9999888888999999999999999987 446788777 999999999 5666655554 888888888
Q ss_pred ecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 210 KNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 210 ~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
.| +|+|.++++|+.||.|.+|+.++++....++.
T Consensus 459 --af-S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 459 --AF-SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred --Ee-cCCCcEEEecCCCCeeEeccccchheeEeecC
Confidence 77 89999999999999999999999887774444
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=208.84 Aligned_cols=210 Identities=11% Similarity=0.099 Sum_probs=182.1
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
.|+++|+++.|++++. ++++|..+|.|++|+..-. .+..+...|...|++++|+|....+++|+.||+|+
T Consensus 136 aHDs~Vr~m~ws~~g~---------wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ik 205 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNGT---------WMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIK 205 (464)
T ss_pred hhcccceeEEEccCCC---------EEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEE
Confidence 6999999999999999 9999999999999997644 45566664669999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
+||....+....+.+|...|.+++|+|....+++++.+ |++||.+++.++.++..|...|..+.|++++++|++++.
T Consensus 206 iWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk- 284 (464)
T KOG0284|consen 206 IWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK- 284 (464)
T ss_pred EEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC-
Confidence 99999888888899999999999999999999998877 999999999999999999999999999999999999887
Q ss_pred CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 177 EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
|..+++||++ .-+.+..+. +|...+.++ .|..-....+.+|+.||.|..|.+...+.+..+.+
T Consensus 285 D~~~kv~DiR--~mkEl~~~r---~Hkkdv~~~--~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~ 347 (464)
T KOG0284|consen 285 DQSCKVFDIR--TMKELFTYR---GHKKDVTSL--TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP 347 (464)
T ss_pred CceEEEEehh--HhHHHHHhh---cchhhheee--ccccccccceeeccCCCceEEEeccccccccCCCc
Confidence 9999999996 333333444 677777777 66445567789999999999999986666664555
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-28 Score=214.49 Aligned_cols=204 Identities=12% Similarity=0.141 Sum_probs=158.4
Q ss_pred CCCCCeEEEEeecc-ccccccccCceEEEEEcCCCcEEEEEccCCe--------eEEEecCCCCCCeEEEEEecCCCE-E
Q 036605 19 EPVVSYSCLACGFV-GKKRRKERGTLLLALGTSNGDILAVDVLTGE--------MKWKSTGRHPGGLAGLAFAKKGRS-L 88 (340)
Q Consensus 19 ~~~~~v~~l~~sp~-~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--------~~~~~~~~h~~~v~~v~~~~~~~~-l 88 (340)
+|...|.+++|+|+ +. +||+|+.||+|++||+.++. .+..+.+ |...|.+++|+|++.. |
T Consensus 72 gH~~~V~~lafsP~~~~---------lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iL 141 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSE---------ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIM 141 (568)
T ss_pred CCCCCEEEEEEcCCCCC---------EEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEE
Confidence 79999999999997 57 89999999999999997642 2335666 9999999999998875 5
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeecCCCCeEEE-----
Q 036605 89 HVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSDDVGPLQYV----- 161 (340)
Q Consensus 89 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~~~~~v~~~----- 161 (340)
++++.|+.|++||+.+++.+..+. +...|.+++|+|+|.+|+++ ++.|++||+++++.+..+.+|.+.+...
T Consensus 142 aSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~ 220 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWID 220 (568)
T ss_pred EEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEee
Confidence 789999999999999998777775 55789999999999999875 4459999999999999999998765432
Q ss_pred EECCCCCEEEEEEcCC---CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 162 SASDGAKIIITAGYGE---KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 162 ~~s~~~~~l~s~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.|++++.+|++++..+ +.|+|||++. ....+. ...+.. ....+...+..+++.++++|+.|+.|++|++..+
T Consensus 221 ~fs~d~~~IlTtG~d~~~~R~VkLWDlr~-~~~pl~--~~~ld~--~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 221 GLGGDDNYILSTGFSKNNMREMKLWDLKN-TTSALV--TMSIDN--ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred eEcCCCCEEEEEEcCCCCccEEEEEECCC-CCCceE--EEEecC--CccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 3468889999988732 4799999952 222221 111122 1112222443667899999999999999998653
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=187.29 Aligned_cols=216 Identities=13% Similarity=0.179 Sum_probs=176.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCCCeEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~ 78 (340)
+|...+|.+..++. |.++.|..|...|+++ +||+++. -.|++||+.+++ .+.++.+ |...|++
T Consensus 24 fWqa~tG~C~rTiq----h~dsqVNrLeiTpdk~---------~LAaa~~-qhvRlyD~~S~np~Pv~t~e~-h~kNVta 88 (311)
T KOG0315|consen 24 FWQALTGICSRTIQ----HPDSQVNRLEITPDKK---------DLAAAGN-QHVRLYDLNSNNPNPVATFEG-HTKNVTA 88 (311)
T ss_pred eeehhcCeEEEEEe----cCccceeeEEEcCCcc---------hhhhccC-CeeEEEEccCCCCCceeEEec-cCCceEE
Confidence 58999999999998 8889999999999999 7888764 479999999876 5778888 9999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEe-ecCC
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKF-SDDV 155 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~-~~~~ 155 (340)
+.|..+|+++++|+.||++++||++.....+.+ .+..+|+++..+|+...|++++.. |++||+........+ ....
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 999999999999999999999999985554445 467999999999999999998776 999999987655554 4445
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccC---CceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEE
Q 036605 156 GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNK---GPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYS 232 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~v 232 (340)
..|.++...|||.+++.+.. .|..++|++- ...... ...--..|...+..+ .+ +|++++|+++|.|.+++|
T Consensus 168 ~~i~sl~v~~dgsml~a~nn-kG~cyvW~l~--~~~~~s~l~P~~k~~ah~~~il~C--~l-SPd~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANN-KGNCYVWRLL--NHQTASELEPVHKFQAHNGHILRC--LL-SPDVKYLATCSSDKTVKI 241 (311)
T ss_pred cceeeEEEcCCCcEEEEecC-CccEEEEEcc--CCCccccceEhhheecccceEEEE--EE-CCCCcEEEeecCCceEEE
Confidence 78999999999999998766 9999999983 321111 111111344444444 66 899999999999999999
Q ss_pred EECCCC
Q 036605 233 WDLKTV 238 (340)
Q Consensus 233 wd~~~~ 238 (340)
|+..+.
T Consensus 242 wn~~~~ 247 (311)
T KOG0315|consen 242 WNTDDF 247 (311)
T ss_pred EecCCc
Confidence 998875
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=206.09 Aligned_cols=209 Identities=17% Similarity=0.208 Sum_probs=180.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||.++-++.+.+. +|++.|.|+.|. .+ .+++|+.|.+|++||+++|+++.++.+ |...|..+.
T Consensus 221 iWD~n~~~c~~~L~----GHtGSVLCLqyd--~r---------viisGSSDsTvrvWDv~tge~l~tlih-HceaVLhlr 284 (499)
T KOG0281|consen 221 IWDKNSLECLKILT----GHTGSVLCLQYD--ER---------VIVSGSSDSTVRVWDVNTGEPLNTLIH-HCEAVLHLR 284 (499)
T ss_pred EeccccHHHHHhhh----cCCCcEEeeecc--ce---------EEEecCCCceEEEEeccCCchhhHHhh-hcceeEEEE
Confidence 69998888888887 999999999996 56 899999999999999999999999998 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEE---EEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEeecCC
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVI---REFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~~ 155 (340)
|+ +.++++++.|.++.+||+.....+ +.+.+|...|..+.|+. ++++++++ +|++|++.+++.++.+.+|.
T Consensus 285 f~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHk 360 (499)
T KOG0281|consen 285 FS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHK 360 (499)
T ss_pred Ee--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhccc
Confidence 98 679999999999999999765422 23678999999998874 47766544 49999999999999999999
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 156 GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
..|.++.+ .++++++|++ |.+|++||+ ..+..+..+. +|+..+..+ .-|...+++|+.||+|++||+
T Consensus 361 RGIAClQY--r~rlvVSGSS-DntIRlwdi--~~G~cLRvLe---GHEeLvRci-----RFd~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 361 RGIACLQY--RDRLVVSGSS-DNTIRLWDI--ECGACLRVLE---GHEELVRCI-----RFDNKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred ccceehhc--cCeEEEecCC-CceEEEEec--cccHHHHHHh---chHHhhhhe-----eecCceeeeccccceEEEEec
Confidence 99999888 5678888777 999999999 6788777777 888887766 457789999999999999999
Q ss_pred CCCCccC
Q 036605 236 KTVSQDE 242 (340)
Q Consensus 236 ~~~~~~~ 242 (340)
.......
T Consensus 428 ~aaldpr 434 (499)
T KOG0281|consen 428 QAALDPR 434 (499)
T ss_pred ccccCCc
Confidence 8865543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=209.23 Aligned_cols=203 Identities=8% Similarity=0.101 Sum_probs=179.7
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
.+|...|+|++|||+.. -+++++.||+|+|||....+....+.+ |.-.|.++.|+|...+++++|.|..|
T Consensus 177 ahh~eaIRdlafSpnDs---------kF~t~SdDg~ikiWdf~~~kee~vL~G-HgwdVksvdWHP~kgLiasgskDnlV 246 (464)
T KOG0284|consen 177 AHHAEAIRDLAFSPNDS---------KFLTCSDDGTIKIWDFRMPKEERVLRG-HGWDVKSVDWHPTKGLIASGSKDNLV 246 (464)
T ss_pred HhhhhhhheeccCCCCc---------eeEEecCCCeEEEEeccCCchhheecc-CCCCcceeccCCccceeEEccCCcee
Confidence 37779999999999886 699999999999999998888888888 99999999999999999999999999
Q ss_pred EEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 98 SEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
++||.++|..+.++..|+..|..+.|+|++++|++++.+ +++||+++.+.++.+++|...++++.|+|-..-|++.+.
T Consensus 247 KlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 247 KLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred EeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc
Confidence 999999999999999999999999999999999998887 999999999999999999999999999998766666555
Q ss_pred CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 176 GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.||.|..|.+. ..+ ........|...+.++ .| +|-|..|++|+.|..+++|.-..
T Consensus 327 ~Dgsvvh~~v~--~~~--p~~~i~~AHd~~iwsl--~~-hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 327 SDGSVVHWVVG--LEE--PLGEIPPAHDGEIWSL--AY-HPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred CCCceEEEecc--ccc--cccCCCcccccceeee--ec-cccceeEeecCCCcceeeeccCC
Confidence 59999999984 222 2223334677777777 77 89999999999999999997543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=188.54 Aligned_cols=203 Identities=17% Similarity=0.192 Sum_probs=159.4
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCC--EEEEEeCCCc
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGR--SLHVVGTNGM 96 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~~~dg~ 96 (340)
.|.++++|++.+ +. ++|+|+.|.+|+|||+.....+..+.. |.+.|+++.|.++-. .|++|+.||.
T Consensus 41 aH~~sitavAVs--~~---------~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 41 AHAGSITALAVS--GP---------YVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred ccccceeEEEec--ce---------eEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeecCCCc
Confidence 789999999997 77 999999999999999999888888887 999999999998765 8999999999
Q ss_pred EEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCC--------
Q 036605 97 ASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDG-------- 166 (340)
Q Consensus 97 i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~-------- 166 (340)
|.+|+......+..+++|...|+.++++|.+++.++.+++ +++||+-.|+.-....- ....+.+.|+|.
T Consensus 109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEe
Confidence 9999999999999999999999999999999998875555 99999988764433221 111122444444
Q ss_pred -------------------------------CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCC
Q 036605 167 -------------------------------AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNG 215 (340)
Q Consensus 167 -------------------------------~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
+.+|++|+. |+.|.+||.+ .......+ ..|+..+-++.... .
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d-~~~i~~~D~d--s~~~~~~~---~AH~~RVK~i~~~~-~ 260 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGD-NEWISLKDTD--SDTPLTEF---LAHENRVKDIASYT-N 260 (362)
T ss_pred ccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecC-CceEEEeccC--CCccceee---ecchhheeeeEEEe-c
Confidence 345556555 6777777763 33222333 37777777774344 7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCcc
Q 036605 216 EDGTVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 216 ~~~~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
+++.+|+++++||.|+|||+......
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred CCceEEEEeccCceEEEEEccccccC
Confidence 88999999999999999999875444
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=201.98 Aligned_cols=206 Identities=18% Similarity=0.268 Sum_probs=174.3
Q ss_pred CceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE--------------------
Q 036605 7 GSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW-------------------- 66 (340)
Q Consensus 7 g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~-------------------- 66 (340)
|.++..+. .|.++|.++.|+..|. ||++++.||++.+||..+|....
T Consensus 266 G~l~~tl~----~HkgPI~slKWnk~G~---------yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F 332 (524)
T KOG0273|consen 266 GNLISTLG----QHKGPIFSLKWNKKGT---------YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEF 332 (524)
T ss_pred chhhhhhh----ccCCceEEEEEcCCCC---------EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceE
Confidence 34444444 7999999999999999 99999999999999986655332
Q ss_pred ---------------------EecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEcc
Q 036605 67 ---------------------KSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLC 125 (340)
Q Consensus 67 ---------------------~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~ 125 (340)
++.+ |.+.|.++.|+|.+.+|++|+.|+++++|....+.....+.+|...|+.+.|+|
T Consensus 333 ~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSP 411 (524)
T ss_pred eecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecC
Confidence 2245 999999999999999999999999999999998888899999999999999999
Q ss_pred CCC---------EEEEec--CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccC
Q 036605 126 EEK---------IFALAS--SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNK 194 (340)
Q Consensus 126 ~~~---------~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~ 194 (340)
.|. .+++++ ..|++||+..+.++..|..|..+|.+++|+|+|+|+++++. |+.|.+|++ ..++..+
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~-dg~V~iws~--~~~~l~~ 488 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL-DGCVHIWST--KTGKLVK 488 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC-CCeeEeccc--cchheeE
Confidence 763 455544 44999999999999999999999999999999999999887 999999998 4554433
Q ss_pred CceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 195 GPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.. .....++.+ +| +.+|.+|.++..||.+++.|++
T Consensus 489 s~----~~~~~Ifel--~W-n~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 489 SY----QGTGGIFEL--CW-NAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ee----cCCCeEEEE--EE-cCCCCEEEEEecCCCceEEEec
Confidence 33 344556677 77 7888999999999999999875
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=184.44 Aligned_cols=201 Identities=15% Similarity=0.212 Sum_probs=169.1
Q ss_pred CCCCCeEEEEeecc-ccccccccCceEEEEEcCCCcEEEEEccCC---eeEEEecCCCCCCeEEEEEecCCCEEEEEeCC
Q 036605 19 EPVVSYSCLACGFV-GKKRRKERGTLLLALGTSNGDILAVDVLTG---EMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~-~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d 94 (340)
+|.+++..++|+|- |. +||+|+.|..|++|+...+ .+...+..+|+..|+.++|+|.|++|++++.|
T Consensus 12 gh~~r~W~~awhp~~g~---------ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGV---------ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred CCCCcEEEEEeccCCce---------EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 78899999999998 78 8999999999999998853 34555666799999999999999999999999
Q ss_pred CcEEEEeCCCC--eEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCc---eeEEeecCCCCeEEEEECCCC
Q 036605 95 GMASEMKSEMG--EVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGE---EVLKFSDDVGPLQYVSASDGA 167 (340)
Q Consensus 95 g~i~~wd~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~---~~~~~~~~~~~v~~~~~s~~~ 167 (340)
.++.+|.-..+ +.+..+.+|...|.+++|+++|.+||+++++ |.||....+. ....++.|...|..+.|+|..
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99999986644 5677799999999999999999999998887 9999987543 446779999999999999999
Q ss_pred CEEEEEEcCCCeEEEEEccCCCC--CccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 168 KIIITAGYGEKHLQVWRCDISSK--TVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
..|++++. |++|++|+-.. .. +....+. +|...+..+ .| .+.|..|++++.|+.++||...
T Consensus 163 dlL~S~SY-DnTIk~~~~~~-dddW~c~~tl~---g~~~TVW~~--~F-~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 163 DLLFSCSY-DNTIKVYRDED-DDDWECVQTLD---GHENTVWSL--AF-DNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ceeEEecc-CCeEEEEeecC-CCCeeEEEEec---CccceEEEE--Ee-cCCCceEEEecCCcceEeeeec
Confidence 99999888 99999998631 22 1222222 555555555 66 8899999999999999999865
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=186.95 Aligned_cols=223 Identities=17% Similarity=0.184 Sum_probs=169.5
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC-CeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCc
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT-GEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGM 96 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~ 96 (340)
.+|++.|..+.|+|+|. +||+|+.|..|.+|++.. -+..+.+.+ |.++|..+.|.+|++.+++++.|.+
T Consensus 44 ~gh~geI~~~~F~P~gs---------~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGS---------CFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred CCCcceEEEEEECCCCC---------eEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCCEEEEecCCce
Confidence 48999999999999999 999999999999999543 346677787 9999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEE------------------------------------------EEe-
Q 036605 97 ASEMKSEMGEVIREFKASEKPISSSAFLCEEKIF------------------------------------------ALA- 133 (340)
Q Consensus 97 i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l------------------------------------------~~~- 133 (340)
|+.||+++|+...+++.|...+.++..+.-|..+ .++
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeecc
Confidence 9999999999888777766665555433333333 222
Q ss_pred -cCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeec--CCCeeeeee
Q 036605 134 -SSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMR--HSPVAIDCK 210 (340)
Q Consensus 134 -~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~ 210 (340)
+++|++||++.+..+..+.+|..+|+.+..+++|.++++-+. |.++++||++.-.... +.+....+ |.-...-+.
T Consensus 194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM-d~tvrvwd~rp~~p~~-R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM-DNTVRVWDVRPFAPSQ-RCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc-cceEEEEEecccCCCC-ceEEEeecchhhhhhhcce
Confidence 222566666666666777889999999999999999999777 9999999996433221 11111112 222334456
Q ss_pred cCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCCceEEEee
Q 036605 211 NSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNPAKITVKL 253 (340)
Q Consensus 211 ~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p~~i~~~~ 253 (340)
|+| +|++..+.+|+.|..+++||......+..+..+.-.+..
T Consensus 272 csw-sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~ 313 (338)
T KOG0265|consen 272 CSW-SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNE 313 (338)
T ss_pred eec-cCCCCccccccccceEEEeecccccEEEEcCCcceeEEE
Confidence 688 999999999999999999999887766633335444443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-28 Score=193.39 Aligned_cols=198 Identities=15% Similarity=0.173 Sum_probs=175.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
+|+..|.+++|-|.|. ++++++.|.+|..|++.+|..+.++.+ |..-|..++.+.||..+++|+.|.+|+
T Consensus 191 gh~h~vS~V~f~P~gd---------~ilS~srD~tik~We~~tg~cv~t~~~-h~ewvr~v~v~~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 191 GHEHGVSSVFFLPLGD---------HILSCSRDNTIKAWECDTGYCVKTFPG-HSEWVRMVRVNQDGTIIASCSNDQTLR 260 (406)
T ss_pred CcccceeeEEEEecCC---------eeeecccccceeEEecccceeEEeccC-chHhEEEEEecCCeeEEEecCCCceEE
Confidence 7899999999999998 999999999999999999999999999 999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccC---------------CCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEE
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCE---------------EKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYV 161 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~---------------~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~ 161 (340)
+|-+.+++....+..|+.+|.+++|.|. ++++++++++ |++||+.++..+.++.+|.+.|..+
T Consensus 261 vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~ 340 (406)
T KOG0295|consen 261 VWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGV 340 (406)
T ss_pred EEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeee
Confidence 9999999888889999999999999763 2466666555 9999999999999999999999999
Q ss_pred EECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 162 SASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 162 ~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
+|+|.|+||+++++ |+++++||+ ..++...... .|+..+..+ .+ +.+..++++|+-|..+++|..
T Consensus 341 af~p~Gkyi~ScaD-Dktlrvwdl--~~~~cmk~~~---ah~hfvt~l--Df-h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 341 AFSPGGKYILSCAD-DKTLRVWDL--KNLQCMKTLE---AHEHFVTSL--DF-HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEcCCCeEEEEEec-CCcEEEEEe--ccceeeeccC---CCcceeEEE--ec-CCCCceEEeccccceeeeeec
Confidence 99999999999998 999999999 4555544444 455454444 44 667779999999999999964
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-28 Score=205.11 Aligned_cols=222 Identities=15% Similarity=0.167 Sum_probs=192.8
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||.++..+...+. -.+.+|.+..|-+-.. .+++|+.|..|+||+..+++.++.|.. |.+.|.+++
T Consensus 39 IWnyetqtmVksfe----V~~~PvRa~kfiaRkn---------Wiv~GsDD~~IrVfnynt~ekV~~FeA-H~DyIR~ia 104 (794)
T KOG0276|consen 39 IWNYETQTMVKSFE----VSEVPVRAAKFIARKN---------WIVTGSDDMQIRVFNYNTGEKVKTFEA-HSDYIRSIA 104 (794)
T ss_pred EEecccceeeeeee----ecccchhhheeeeccc---------eEEEecCCceEEEEecccceeeEEeec-cccceeeee
Confidence 69999998888887 5678999999987777 999999999999999999999999998 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCC-eEEEEeecCCCCeeEEEEccC-CCEEEE--ecCcEEEEECCCCceeEEeecCCC
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMG-EVIREFKASEKPISSSAFLCE-EKIFAL--ASSEVRILSLENGEEVLKFSDDVG 156 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~l~~~~~-~~~l~~--~~~~i~i~d~~~~~~~~~~~~~~~ 156 (340)
.+|...+++++++|-.|++||.+.. ...+.|.+|..-|.+++|.|. ...+++ -|++|++|.+.+..+..++.+|..
T Consensus 105 vHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek 184 (794)
T KOG0276|consen 105 VHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK 184 (794)
T ss_pred ecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc
Confidence 9999999999999999999999865 456779999999999999995 456666 466699999999999999999999
Q ss_pred CeEEEEECC--CCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 157 PLQYVSASD--GAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 157 ~v~~~~~s~--~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
.|+++.|-+ |..||++++. |.+++|||. +++.....+. +|...+..+ +| +|.-..+++|++||+++||+
T Consensus 185 GVN~Vdyy~~gdkpylIsgaD-D~tiKvWDy--Qtk~CV~TLe---GHt~Nvs~v--~f-hp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 185 GVNCVDYYTGGDKPYLISGAD-DLTIKVWDY--QTKSCVQTLE---GHTNNVSFV--FF-HPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred CcceEEeccCCCcceEEecCC-CceEEEeec--chHHHHHHhh---cccccceEE--Ee-cCCCcEEEEecCCccEEEec
Confidence 999999965 4579999888 999999999 6666666666 776666555 56 88999999999999999999
Q ss_pred CCCCCccCCCC
Q 036605 235 LKTVSQDEKTN 245 (340)
Q Consensus 235 ~~~~~~~~~~~ 245 (340)
..+.++...+.
T Consensus 256 s~Ty~lE~tLn 266 (794)
T KOG0276|consen 256 SKTYKLEKTLN 266 (794)
T ss_pred Ccceehhhhhh
Confidence 98876655443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-26 Score=190.95 Aligned_cols=219 Identities=21% Similarity=0.319 Sum_probs=183.8
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+||..+++....+. .|...+.++.|+|+++ ++++++.+|.|.+||+.+++....+.. |...|.++.
T Consensus 35 i~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~---------~l~~~~~~~~i~i~~~~~~~~~~~~~~-~~~~i~~~~ 100 (289)
T cd00200 35 VWDLETGELLRTLK----GHTGPVRDVAASADGT---------YLASGSSDKTIRLWDLETGECVRTLTG-HTSYVSSVA 100 (289)
T ss_pred EEEeeCCCcEEEEe----cCCcceeEEEECCCCC---------EEEEEcCCCeEEEEEcCcccceEEEec-cCCcEEEEE
Confidence 57887777666666 6788899999999998 899999999999999998887878887 888999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeecCCCCe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~~~~~v 158 (340)
|++++..+++++.|+.|.+||+.+++....+..|...+.+++++|++.+++++ ++.|++||+.+++.+..+..|...+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 180 (289)
T cd00200 101 FSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180 (289)
T ss_pred EcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcccc
Confidence 99998888888889999999999998888888888899999999999988886 4559999999988888888898999
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.++.|+|++..+++++. ++.|++||++ .++....+. .+...+..+ .+ ++++.++++++.||.|++|++.++
T Consensus 181 ~~~~~~~~~~~l~~~~~-~~~i~i~d~~--~~~~~~~~~---~~~~~i~~~--~~-~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 181 NSVAFSPDGEKLLSSSS-DGTIKLWDLS--TGKCLGTLR---GHENGVNSV--AF-SPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred ceEEECCCcCEEEEecC-CCcEEEEECC--CCceecchh---hcCCceEEE--EE-cCCCcEEEEEcCCCcEEEEEcCCc
Confidence 99999999999999887 9999999984 333333332 344344444 44 677888888888999999999875
Q ss_pred CccC
Q 036605 239 SQDE 242 (340)
Q Consensus 239 ~~~~ 242 (340)
+...
T Consensus 252 ~~~~ 255 (289)
T cd00200 252 ECVQ 255 (289)
T ss_pred eeEE
Confidence 5444
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=192.23 Aligned_cols=245 Identities=14% Similarity=0.155 Sum_probs=195.3
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
+|..+|..+.||||.+ +|++++.+..+.+||+.+|...+.+..+|...+.+++|.|||..+++|+.|+.|.
T Consensus 267 gh~~~V~yi~wSPDdr---------yLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 267 GHSQPVSYIMWSPDDR---------YLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred cccCceEEEEECCCCC---------eEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 8999999999999999 9999999999999999999988888765678899999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCC-CCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 99 EMKSEMGEVIREFKASE-KPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
.||+. |+.+..+++-. ..|.++++++||+++++.+. .|++|+.++......+ ....+|++...|.+++++++.-.
T Consensus 338 ~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 338 MWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQ 415 (519)
T ss_pred EecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcc
Confidence 99986 56666676544 35899999999999877444 4999998876444333 34578999999999999999666
Q ss_pred CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCCceEEEeecc
Q 036605 176 GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNPAKITVKLKK 255 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p~~i~~~~~~ 255 (340)
+..+++||+ ........+. +|....+.+.+||...+..++++||+|+.|+||+..+++.+..+..+...+.
T Consensus 416 -~qei~LWDl--~e~~lv~kY~---Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN--- 486 (519)
T KOG0293|consen 416 -DQEIHLWDL--EENKLVRKYF---GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN--- 486 (519)
T ss_pred -cCeeEEeec--chhhHHHHhh---cccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceee---
Confidence 999999999 4444444444 7777777777788777889999999999999999999998886665432222
Q ss_pred cccccccccccccccceeeeeecccccCCCeEEEecCCc
Q 036605 256 ADADQQNSVNVKKSRTSIIAARLNDLEADGQKTITGLHD 294 (340)
Q Consensus 256 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 294 (340)
-+...|..+.++| +...|+++.++...+
T Consensus 487 -------cVswNP~~p~m~A----SasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 487 -------CVSWNPADPEMFA----SASDDGTIRIWGPSD 514 (519)
T ss_pred -------EEecCCCCHHHhh----ccCCCCeEEEecCCc
Confidence 1124444444443 445899999997665
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-28 Score=194.71 Aligned_cols=213 Identities=19% Similarity=0.271 Sum_probs=174.4
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-------CCCCCeEEEEEecCCCEEEE
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-------RHPGGLAGLAFAKKGRSLHV 90 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~l~s 90 (340)
.+..+-+.|..|||||. ||++|+.||-|.+||..+|+....++. -+..+|.|++|+.|...|++
T Consensus 210 Fg~KSh~EcA~FSPDgq---------yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAs 280 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQ---------YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLAS 280 (508)
T ss_pred cccccchhheeeCCCCc---------eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhc
Confidence 45667789999999999 999999999999999999986554432 26779999999999999999
Q ss_pred EeCCCcEEEEeCCCCeEEEEee-cCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCC
Q 036605 91 VGTNGMASEMKSEMGEVIREFK-ASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGA 167 (340)
Q Consensus 91 ~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 167 (340)
|+.||.|++|.+.+|..++.|. +|...|+|+.|+.|+..+++++.+ +++.-+++|+.+..|.+|.+.|+...|.+||
T Consensus 281 GsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG 360 (508)
T ss_pred cCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCC
Confidence 9999999999999999999987 899999999999999999887665 9999999999999999999999999999999
Q ss_pred CEEEEEEcCCCeEEEEEccCCCCCccCCce-----------eeec-CCCe------------------ee----------
Q 036605 168 KIIITAGYGEKHLQVWRCDISSKTVNKGPA-----------LSMR-HSPV------------------AI---------- 207 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~-~~~~------------------~~---------- 207 (340)
.++++++. ||+|+||+.. +.+....+. ..+. .++. +.
T Consensus 361 ~~iisaSs-DgtvkvW~~K--tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREg 437 (508)
T KOG0275|consen 361 HHIISASS-DGTVKVWHGK--TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREG 437 (508)
T ss_pred CeEEEecC-CccEEEecCc--chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccC
Confidence 99999888 9999999973 322111100 0000 0000 00
Q ss_pred -eeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 208 -DCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 208 -~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
++.++..+|.|.++++.+.|+.++.|.+.++....
T Consensus 438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred CceEEEEecCCCcEEEEEccCcEEEEEEeecCceee
Confidence 11112228899999999999999999999887766
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=205.79 Aligned_cols=202 Identities=13% Similarity=0.141 Sum_probs=177.9
Q ss_pred CCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCee---EEEe-----cCCCCCCeEEEEEecCCCEE
Q 036605 18 GEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEM---KWKS-----TGRHPGGLAGLAFAKKGRSL 88 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~-----~~~h~~~v~~v~~~~~~~~l 88 (340)
.+|...|.+++++..+ . +|++++.|++|++|++...+. ...+ ...|...|++++.+|+.+++
T Consensus 408 ~gH~~svgava~~~~~as---------ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLi 478 (775)
T KOG0319|consen 408 NGHTNSVGAVAGSKLGAS---------FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLI 478 (775)
T ss_pred cccccccceeeecccCcc---------EEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceE
Confidence 3899999999997766 5 999999999999999876221 1111 12599999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCC
Q 036605 89 HVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDG 166 (340)
Q Consensus 89 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 166 (340)
+|||.|.+.++|+++.......+.+|...+.++.|+|..+.+++++++ |+||.+.+..++.+|.+|...|..+.|-.+
T Consensus 479 AT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~ 558 (775)
T KOG0319|consen 479 ATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRN 558 (775)
T ss_pred EecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeC
Confidence 999999999999999999999999999999999999999999986655 999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 167 AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 167 ~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
++.|++++. ||.|++|++ .+.+....+. .|...++.+ +. ++....+++|+.||.|.+|.=.+
T Consensus 559 ~~qliS~~a-dGliKlWni--kt~eC~~tlD---~H~DrvWaL--~~-~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 559 GKQLISAGA-DGLIKLWNI--KTNECEMTLD---AHNDRVWAL--SV-SPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEeccC-CCcEEEEec--cchhhhhhhh---hccceeEEE--ee-cCccceeEecCCCeEEEEeecCc
Confidence 999999998 999999999 6777777777 888888877 55 67777999999999999996544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=196.88 Aligned_cols=244 Identities=15% Similarity=0.115 Sum_probs=197.8
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
.++..|.|+.|+|... .++++-.+|.|.|||.++..++..+.- ..-+|.+..|-+.-+++++|++|..|+
T Consensus 11 ~rSdRVKsVd~HPteP---------w~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEP---------WILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred ccCCceeeeecCCCCc---------eEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccceEEEecCCceEE
Confidence 5789999999999998 999999999999999999999988887 777999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCC-ceeEEeecCCCCeEEEEECCC-CCEEEEEE
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENG-EEVLKFSDDVGPLQYVSASDG-AKIIITAG 174 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~ 174 (340)
+|+..+++.+..|.+|..-|.+++++|...++++++.+ |++||.+.+ .+.+.|.+|...|.+++|.|. .+.+++++
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 99999999999999999999999999999999998777 999999876 455889999999999999985 55778877
Q ss_pred cCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCCceEEEeec
Q 036605 175 YGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNPAKITVKLK 254 (340)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p~~i~~~~~ 254 (340)
. |++|+||.+ .+. ...+.+. +|...+..+ +.+..+|..+|++|+.|..|+|||..+...+.++..+.-.++..
T Consensus 161 L-DrTVKVWsl--gs~--~~nfTl~-gHekGVN~V-dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v 233 (794)
T KOG0276|consen 161 L-DRTVKVWSL--GSP--HPNFTLE-GHEKGVNCV-DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFV 233 (794)
T ss_pred c-cccEEEEEc--CCC--CCceeee-ccccCcceE-EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEE
Confidence 7 999999999 333 2333333 676666655 33336777899999999999999999988887777633222211
Q ss_pred ccccccccccccccccceeeeeecccccCCCeEEEecCCc
Q 036605 255 KADADQQNSVNVKKSRTSIIAARLNDLEADGQKTITGLHD 294 (340)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 294 (340)
.-.|..+-|+.+. +|+++.++....
T Consensus 234 ----------~fhp~lpiiisgs-----EDGTvriWhs~T 258 (794)
T KOG0276|consen 234 ----------FFHPELPIIISGS-----EDGTVRIWNSKT 258 (794)
T ss_pred ----------EecCCCcEEEEec-----CCccEEEecCcc
Confidence 1244443343333 788888884433
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=182.41 Aligned_cols=215 Identities=12% Similarity=0.167 Sum_probs=184.8
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-eEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-MKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~h~~~v~~v 79 (340)
|||..+|..+..|. |.--|..++|+.|.. +|++|+.+..++|||++..+ ....+.+ |++.|..+
T Consensus 85 vw~a~tgdelhsf~-----hkhivk~~af~~ds~---------~lltgg~ekllrvfdln~p~App~E~~g-htg~Ir~v 149 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-----HKHIVKAVAFSQDSN---------YLLTGGQEKLLRVFDLNRPKAPPKEISG-HTGGIRTV 149 (334)
T ss_pred hhhhhhhhhhhhhh-----hhheeeeEEecccch---------hhhccchHHHhhhhhccCCCCCchhhcC-CCCcceeE
Confidence 69999999888775 888999999999998 89999999999999998765 4556677 99999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc-EEEEECCCCceeEEeecCCCCe
Q 036605 80 AFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE-VRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 80 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~-i~i~d~~~~~~~~~~~~~~~~v 158 (340)
-|....+.+++.+.|+.|++||.+++..++.+.. +.+|+++.++++|+++.++.+. |.+||..+-..+..+.. +..|
T Consensus 150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV 227 (334)
T KOG0278|consen 150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNV 227 (334)
T ss_pred EEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-cccc
Confidence 9999899999999999999999999999988864 6689999999999999887666 99999999888877753 5678
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.+..++|+...+++++. |..++.||. .+++.+... .-+|...+..+ .| +|+|...++||.||+|++|....+
T Consensus 228 ~SASL~P~k~~fVaGge-d~~~~kfDy--~TgeEi~~~--nkgh~gpVhcV--rF-SPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 228 ESASLHPKKEFFVAGGE-DFKVYKFDY--NTGEEIGSY--NKGHFGPVHCV--RF-SPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ccccccCCCceEEecCc-ceEEEEEec--cCCceeeec--ccCCCCceEEE--EE-CCCCceeeccCCCceEEEEEecCC
Confidence 99999999988888777 999999999 677665553 22777777776 66 899999999999999999998664
Q ss_pred Cc
Q 036605 239 SQ 240 (340)
Q Consensus 239 ~~ 240 (340)
+.
T Consensus 300 ~~ 301 (334)
T KOG0278|consen 300 KT 301 (334)
T ss_pred Cc
Confidence 43
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-26 Score=190.10 Aligned_cols=211 Identities=16% Similarity=0.259 Sum_probs=178.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||..+++....+. .|...+.++.|+|+++ ++++++.+|.|.+||+.+++....+.. |...|.+++
T Consensus 77 i~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~ 142 (289)
T cd00200 77 LWDLETGECVRTLT----GHTSYVSSVAFSPDGR---------ILSSSSRDKTIKVWDVETGKCLTTLRG-HTDWVNSVA 142 (289)
T ss_pred EEEcCcccceEEEe----ccCCcEEEEEEcCCCC---------EEEEecCCCeEEEEECCCcEEEEEecc-CCCcEEEEE
Confidence 58888877777776 6778999999999988 888888899999999998888888886 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEeecCCCCe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~v 158 (340)
|+|++.++++++.|+.|.+||+.+++.+..+..+...+.++.|+|++..+++++ +.+++||+..++.+..+..|...+
T Consensus 143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 222 (289)
T cd00200 143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGV 222 (289)
T ss_pred EcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCce
Confidence 999988888888899999999999988888888888999999999998777754 449999999988888888888999
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
.++.|+|++.++++++. ++.|++|+++ .+.....+. .+...+..+ .+ ++++.++++++.||.+++|+
T Consensus 223 ~~~~~~~~~~~~~~~~~-~~~i~i~~~~--~~~~~~~~~---~~~~~i~~~--~~-~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 223 NSVAFSPDGYLLASGSE-DGTIRVWDLR--TGECVQTLS---GHTNSVTSL--AW-SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCCcEEEEEcC-CCcEEEEEcC--CceeEEEcc---ccCCcEEEE--EE-CCCCCEEEEecCCCeEEecC
Confidence 99999999888887665 9999999983 333333332 444445554 55 78889999999999999996
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-27 Score=207.65 Aligned_cols=223 Identities=13% Similarity=0.162 Sum_probs=190.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+||..-|.++..|. .|+++|..++|+|.+. ++++|+.|-.|++|+..+.+++.++.+ |-+.|..+.
T Consensus 35 lWDYRM~tli~rFd----eHdGpVRgv~FH~~qp---------lFVSGGDDykIkVWnYk~rrclftL~G-HlDYVRt~~ 100 (1202)
T KOG0292|consen 35 LWDYRMGTLIDRFD----EHDGPVRGVDFHPTQP---------LFVSGGDDYKIKVWNYKTRRCLFTLLG-HLDYVRTVF 100 (1202)
T ss_pred eehhhhhhHHhhhh----ccCCccceeeecCCCC---------eEEecCCccEEEEEecccceehhhhcc-ccceeEEee
Confidence 69999999999998 8999999999999999 999999999999999999999999999 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCc------------
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGE------------ 146 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~------------ 146 (340)
|++.-.+++++|+|.+|++|+.++++.+..+++|...|.|.+|+|....+++++ .+|++||+...+
T Consensus 101 FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~ 180 (1202)
T KOG0292|consen 101 FHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQ 180 (1202)
T ss_pred ccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhh
Confidence 999999999999999999999999999999999999999999999988888865 449999985311
Q ss_pred ---------------ee--EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeee
Q 036605 147 ---------------EV--LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDC 209 (340)
Q Consensus 147 ---------------~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (340)
.+ ..+.+|...|+-++|+|.-..|++++. |+.|++|.+. .++. ......-+|...+..+
T Consensus 181 ~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D-DRqVKlWrmn-etKa--WEvDtcrgH~nnVssv 256 (1202)
T KOG0292|consen 181 MRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD-DRQVKLWRMN-ETKA--WEVDTCRGHYNNVSSV 256 (1202)
T ss_pred hhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC-cceeeEEEec-cccc--eeehhhhcccCCcceE
Confidence 11 234789999999999999999999888 9999999984 2221 1111122666655555
Q ss_pred ecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCC
Q 036605 210 KNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKT 244 (340)
Q Consensus 210 ~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~ 244 (340)
.| +|....+++.++|+.|+|||+.....+..+
T Consensus 257 --lf-hp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 257 --LF-HPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred --Ee-cCccceeEecCCCccEEEEecccccceeee
Confidence 55 888899999999999999999876555544
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=181.23 Aligned_cols=212 Identities=16% Similarity=0.286 Sum_probs=179.2
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
||+..+|....+++ +|+..|+|+.||.+|. |||+|.-+|.|.||...++...+.+.. .-+.|.=+.
T Consensus 90 lW~~~~ge~~~elt----gHKDSVt~~~Fshdgt---------lLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~ 155 (399)
T KOG0296|consen 90 LWDISTGEFAGELT----GHKDSVTCCSFSHDGT---------LLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLK 155 (399)
T ss_pred EEEccCCcceeEec----CCCCceEEEEEccCce---------EEEecCCCccEEEEEcccCceEEEeec-ccCceEEEE
Confidence 69999999999998 9999999999999999 999999999999999999999988875 566788899
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEe--cCcEEEEECCCCceeEEee------
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFS------ 152 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~------ 152 (340)
|+|.+..|+.|+.||.+.+|.+.++.....+.+|..++++=.|.|+|+.++++ +++|++|++.++.++..+.
T Consensus 156 WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~ 235 (399)
T KOG0296|consen 156 WHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLE 235 (399)
T ss_pred ecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCc
Confidence 99999999999999999999999988888899999999999999999999885 5559999999887665443
Q ss_pred --------------------------------------------------------------------------------
Q 036605 153 -------------------------------------------------------------------------------- 152 (340)
Q Consensus 153 -------------------------------------------------------------------------------- 152 (340)
T Consensus 236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~ 315 (399)
T KOG0296|consen 236 LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL 315 (399)
T ss_pred CCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec
Confidence
Q ss_pred ---------cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEE
Q 036605 153 ---------DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILA 223 (340)
Q Consensus 153 ---------~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 223 (340)
.|..+|..+.|.+ ..+|++++. +|.|+.||.| +++....+. +|...+.++ +. +|+..++++
T Consensus 316 a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~-~g~v~~wDaR--tG~l~~~y~---GH~~~Il~f--~l-s~~~~~vvT 385 (399)
T KOG0296|consen 316 AASTLRHICEHEDGVTKLKWLN-TDYLLTACA-NGKVRQWDAR--TGQLKFTYT---GHQMGILDF--AL-SPQKRLVVT 385 (399)
T ss_pred ccchhheeccCCCceEEEEEcC-cchheeecc-CceEEeeecc--ccceEEEEe---cCchheeEE--EE-cCCCcEEEE
Confidence 1445566666666 567777666 7888888873 555555555 777777776 55 789999999
Q ss_pred EeCCCcEEEEECC
Q 036605 224 VAESGVAYSWDLK 236 (340)
Q Consensus 224 ~s~dg~i~vwd~~ 236 (340)
+|.|+..+||++.
T Consensus 386 ~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 386 VSDDNTALVFEVP 398 (399)
T ss_pred ecCCCeEEEEecC
Confidence 9999999999864
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=197.97 Aligned_cols=211 Identities=15% Similarity=0.187 Sum_probs=174.7
Q ss_pred CccCC-CCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTN-DGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~-~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
|||+- .+.++++|. +|..+|..++|+++|. .+.+++.|+.|++||+++|+++.++.. ...++|+
T Consensus 241 lW~vy~~~~~lrtf~----gH~k~Vrd~~~s~~g~---------~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cv 305 (503)
T KOG0282|consen 241 LWNVYDDRRCLRTFK----GHRKPVRDASFNNCGT---------SFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCV 305 (503)
T ss_pred EEEEecCcceehhhh----cchhhhhhhhccccCC---------eeeeeecceeeeeeccccceEEEEEec--CCCceee
Confidence 57764 488999998 9999999999999998 799999999999999999999988873 4568999
Q ss_pred EEecCC-CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCcee--------
Q 036605 80 AFAKKG-RSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEV-------- 148 (340)
Q Consensus 80 ~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~-------- 148 (340)
.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+.+++.+.+ ++||+.+.+-.+
T Consensus 306 kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~ 385 (503)
T KOG0282|consen 306 KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEM 385 (503)
T ss_pred ecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhh
Confidence 999998 789999999999999999999999999999999999999999999886554 999988654221
Q ss_pred --------------------------------------EEeecCC--CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCC
Q 036605 149 --------------------------------------LKFSDDV--GPLQYVSASDGAKIIITAGYGEKHLQVWRCDIS 188 (340)
Q Consensus 149 --------------------------------------~~~~~~~--~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~ 188 (340)
..|.+|. +.-..+.|||||.+|++|.. ||.+.+||+ .
T Consensus 386 hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds-dG~v~~wdw--k 462 (503)
T KOG0282|consen 386 HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS-DGKVNFWDW--K 462 (503)
T ss_pred ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC-CccEEEeec--h
Confidence 1122343 44577899999999999777 999999999 4
Q ss_pred CCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 189 SKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
+.+....+. .|....+.+ .|.......+++++.||.|++|+
T Consensus 463 t~kl~~~lk---ah~~~ci~v--~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 463 TTKLVSKLK---AHDQPCIGV--DWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhhccc---cCCcceEEE--EecCCCcceeEecccCceeEecC
Confidence 545555555 665666666 66445667899999999999996
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=172.13 Aligned_cols=195 Identities=14% Similarity=0.145 Sum_probs=164.5
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC--eeEEEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG--EMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG 95 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg 95 (340)
.+|...|..++|+|.|+ +||+|+.|+++.||.-..+ +++..+.+ |...|.|++|+++|++|++|+.|.
T Consensus 58 ~~hkrsVRsvAwsp~g~---------~La~aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~~LATCSRDK 127 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGR---------YLASASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGNYLATCSRDK 127 (312)
T ss_pred ccchheeeeeeecCCCc---------EEEEeeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCCEEEEeeCCC
Confidence 47999999999999999 9999999999999986655 46778888 999999999999999999999999
Q ss_pred cEEEEeCCCCe---EEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCC---CceeEEeecCCCCeEEEEECCCC
Q 036605 96 MASEMKSEMGE---VIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLEN---GEEVLKFSDDVGPLQYVSASDGA 167 (340)
Q Consensus 96 ~i~~wd~~~~~---~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~---~~~~~~~~~~~~~v~~~~~s~~~ 167 (340)
.|-+|.+..+. ....+..|...|..+.|+|...+|++++.+ |++|.-.. -...+++.+|...|.+++|++.|
T Consensus 128 SVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G 207 (312)
T KOG0645|consen 128 SVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG 207 (312)
T ss_pred eEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC
Confidence 99999987543 455688999999999999999999998776 99998762 34678999999999999999999
Q ss_pred CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 168 KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
..+++++. |++++||... ..++..|......+ .| . ...|++++.|+.|++|.-..
T Consensus 208 ~rl~s~sd-D~tv~Iw~~~---------~~~~~~~sr~~Y~v--~W-~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 208 SRLVSCSD-DGTVSIWRLY---------TDLSGMHSRALYDV--PW-D--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred ceEEEecC-CcceEeeeec---------cCcchhcccceEee--ee-c--ccceEeccCCCEEEEEEecC
Confidence 99999877 9999999962 11222444455555 45 2 45799999999999997664
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=190.67 Aligned_cols=208 Identities=15% Similarity=0.275 Sum_probs=175.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe---eEEEecCCCCCCeE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE---MKWKSTGRHPGGLA 77 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~~h~~~v~ 77 (340)
|||.++|+++.++. ||...|.-+.|+ .. ++++++.|.+|.+||+.... +.+.+.+ |...|+
T Consensus 261 vWDv~tge~l~tli----hHceaVLhlrf~--ng---------~mvtcSkDrsiaVWdm~sps~it~rrVLvG-HrAaVN 324 (499)
T KOG0281|consen 261 VWDVNTGEPLNTLI----HHCEAVLHLRFS--NG---------YMVTCSKDRSIAVWDMASPTDITLRRVLVG-HRAAVN 324 (499)
T ss_pred EEeccCCchhhHHh----hhcceeEEEEEe--CC---------EEEEecCCceeEEEeccCchHHHHHHHHhh-hhhhee
Confidence 79999999999998 999999999998 34 79999999999999998765 2234556 999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCC
Q 036605 78 GLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 78 ~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~ 155 (340)
.+.|+ .+++++++.|.+|++|++.+++.+.++.+|+..|.|+.+. ++++++|+.+ |++||++.|..++.+.+|+
T Consensus 325 vVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 325 VVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred eeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 99996 6699999999999999999999999999999999998764 7888887665 9999999999999999999
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCce------eeecCCCeeeeeecCCCCCCCCEEEEEeCCCc
Q 036605 156 GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA------LSMRHSPVAIDCKNSPNGEDGTVILAVAESGV 229 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~ 229 (340)
.-|.++.| |.+.|++|+. ||.|+|||+ .......... ....|...++.+ .-|...+++.+.|.+
T Consensus 401 eLvRciRF--d~krIVSGaY-DGkikvWdl--~aaldpra~~~~~Cl~~lv~hsgRVFrL-----QFD~fqIvsssHddt 470 (499)
T KOG0281|consen 401 ELVRCIRF--DNKRIVSGAY-DGKIKVWDL--QAALDPRAPASTLCLRTLVEHSGRVFRL-----QFDEFQIISSSHDDT 470 (499)
T ss_pred Hhhhheee--cCceeeeccc-cceEEEEec--ccccCCcccccchHHHhhhhccceeEEE-----eecceEEEeccCCCe
Confidence 99999999 4568999998 999999999 3433222111 122567777777 456788999999999
Q ss_pred EEEEECCCC
Q 036605 230 AYSWDLKTV 238 (340)
Q Consensus 230 i~vwd~~~~ 238 (340)
|.|||+.++
T Consensus 471 ILiWdFl~~ 479 (499)
T KOG0281|consen 471 ILIWDFLNG 479 (499)
T ss_pred EEEEEcCCC
Confidence 999999764
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=211.62 Aligned_cols=213 Identities=14% Similarity=0.151 Sum_probs=172.8
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeec-cccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGF-VGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
|||+.+++.+..+. +|...|++++|+| ++. +|++|+.||+|++||+.++..+..+.. + ..|.++
T Consensus 559 lWd~~~~~~~~~~~----~H~~~V~~l~~~p~~~~---------~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~-~~v~~v 623 (793)
T PLN00181 559 VWDVARSQLVTEMK----EHEKRVWSIDYSSADPT---------LLASGSDDGSVKLWSINQGVSIGTIKT-K-ANICCV 623 (793)
T ss_pred EEECCCCeEEEEec----CCCCCEEEEEEcCCCCC---------EEEEEcCCCEEEEEECCCCcEEEEEec-C-CCeEEE
Confidence 69999998888887 8999999999997 668 899999999999999999988877764 4 689999
Q ss_pred EEe-cCCCEEEEEeCCCcEEEEeCCCCe-EEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCC------ceeE
Q 036605 80 AFA-KKGRSLHVVGTNGMASEMKSEMGE-VIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENG------EEVL 149 (340)
Q Consensus 80 ~~~-~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~------~~~~ 149 (340)
.|+ +++..|++|+.||.|++||++++. .+..+.+|...|.++.|. ++.++++++ +.|++||+..+ ..+.
T Consensus 624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~ 702 (793)
T PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLH 702 (793)
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence 995 478999999999999999998765 466778899999999997 567777754 44999999743 4677
Q ss_pred EeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCcee----------eecCCCeeeeeecCCCCCCCC
Q 036605 150 KFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPAL----------SMRHSPVAIDCKNSPNGEDGT 219 (340)
Q Consensus 150 ~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 219 (340)
.+.+|...+..+.|++++.+|++++. |+.|.+|+.. .........+ ...+...+..+ +| ++++.
T Consensus 703 ~~~gh~~~i~~v~~s~~~~~lasgs~-D~~v~iw~~~--~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v--~w-s~~~~ 776 (793)
T PLN00181 703 SFMGHTNVKNFVGLSVSDGYIATGSE-TNEVFVYHKA--FPMPVLSYKFKTIDPVSGLEVDDASQFISSV--CW-RGQSS 776 (793)
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEeC-CCEEEEEECC--CCCceEEEecccCCcccccccCCCCcEEEEE--EE-cCCCC
Confidence 88999999999999999999999887 9999999973 2211100000 01233345555 67 89999
Q ss_pred EEEEEeCCCcEEEEEC
Q 036605 220 VILAVAESGVAYSWDL 235 (340)
Q Consensus 220 ~l~~~s~dg~i~vwd~ 235 (340)
.|++|+.||.|+||++
T Consensus 777 ~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 777 TLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecCCCcEEEEec
Confidence 9999999999999986
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=193.07 Aligned_cols=223 Identities=16% Similarity=0.169 Sum_probs=181.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||..+|-+..+|. .|++.|+.+.|+..++ .+++.+-||+|+.||+...+..+++....+-...|++
T Consensus 376 vWn~~SgfC~vTFt----eHts~Vt~v~f~~~g~---------~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscva 442 (893)
T KOG0291|consen 376 VWNTQSGFCFVTFT----EHTSGVTAVQFTARGN---------VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA 442 (893)
T ss_pred EEeccCceEEEEec----cCCCceEEEEEEecCC---------EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEE
Confidence 79999999999999 8999999999999999 8999999999999999999999999864555668999
Q ss_pred EecCCCEEEEEeCC-CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCC
Q 036605 81 FAKKGRSLHVVGTN-GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGP 157 (340)
Q Consensus 81 ~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~ 157 (340)
..|.|..+..|+.| -.|.+|++++|+.+-.+.+|+++|.+++|+|++..|++++.+ |++||+-.......-..+...
T Consensus 443 vD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd 522 (893)
T KOG0291|consen 443 VDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD 522 (893)
T ss_pred EcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccc
Confidence 99999999999888 579999999999999999999999999999999999986554 999998554333333346678
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCc--------------eeeecCC---CeeeeeecCCCCCCCCE
Q 036605 158 LQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGP--------------ALSMRHS---PVAIDCKNSPNGEDGTV 220 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~~ 220 (340)
+..++|.|+|+-|+++.. ||.|.+||.. ...+...+ .++-.+. ..+..+ ++ ++||.+
T Consensus 523 vl~vsfrPdG~elaVaTl-dgqItf~d~~--~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti--~y-SaDG~~ 596 (893)
T KOG0291|consen 523 VLAVSFRPDGKELAVATL-DGQITFFDIK--EAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTI--CY-SADGKC 596 (893)
T ss_pred eeEEEEcCCCCeEEEEEe-cceEEEEEhh--hceeeccccchhhccccccccceeehhhcccCCceEEE--EE-cCCCCE
Confidence 999999999999999888 9999999983 21111000 0000111 112222 34 899999
Q ss_pred EEEEeCCCcEEEEECCCCCccC
Q 036605 221 ILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 221 l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+++|+....|++|++.++-.+.
T Consensus 597 IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 597 ILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred EEecCCcccEEEEECchhheee
Confidence 9999999999999998865554
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=193.50 Aligned_cols=210 Identities=18% Similarity=0.213 Sum_probs=176.7
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe----eEEEecCCCCCCeEEEEEecCC-CEEEEEeC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE----MKWKSTGRHPGGLAGLAFAKKG-RSLHVVGT 93 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~ 93 (340)
+|+..|.++....+|- +|++|+.|.++++|.++++. .+....+ |...|.+++++..+ ..|+++|.
T Consensus 363 GH~e~vlSL~~~~~g~---------llat~sKD~svilWr~~~~~~~~~~~a~~~g-H~~svgava~~~~~asffvsvS~ 432 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGD---------LLATGSKDKSVILWRLNNNCSKSLCVAQANG-HTNSVGAVAGSKLGASFFVSVSQ 432 (775)
T ss_pred CchhheeeeeecccCc---------EEEEecCCceEEEEEecCCcchhhhhhhhcc-cccccceeeecccCccEEEEecC
Confidence 8999999999655677 89999999999999885443 2333455 99999999997644 47999999
Q ss_pred CCcEEEEeCCCCeEE-----E----EeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEE
Q 036605 94 NGMASEMKSEMGEVI-----R----EFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVS 162 (340)
Q Consensus 94 dg~i~~wd~~~~~~~-----~----~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~ 162 (340)
|+++++|++...+.. . ....|...|++++++|+.+++++++.+ .+||+++.......+.+|...|.++.
T Consensus 433 D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~ 512 (775)
T KOG0319|consen 433 DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS 512 (775)
T ss_pred CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEE
Confidence 999999998763211 1 134688999999999999999998776 99999999988999999999999999
Q ss_pred ECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 163 ASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 163 ~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
|++..+.+++++. |.+|+||.+ .+......+. +|...+..+ .| -.++..|++++.||-+++|++++...+.
T Consensus 513 Fs~~dq~laT~Sg-D~TvKIW~i--s~fSClkT~e---GH~~aVlra--~F-~~~~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 513 FSKNDQLLATCSG-DKTVKIWSI--STFSCLKTFE---GHTSAVLRA--SF-IRNGKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred eccccceeEeccC-CceEEEEEe--ccceeeeeec---CccceeEee--ee-eeCCcEEEeccCCCcEEEEeccchhhhh
Confidence 9999999998777 999999999 6776677777 888888777 77 6788999999999999999999988777
Q ss_pred CCCCc
Q 036605 243 KTNPA 247 (340)
Q Consensus 243 ~~~p~ 247 (340)
++..+
T Consensus 584 tlD~H 588 (775)
T KOG0319|consen 584 TLDAH 588 (775)
T ss_pred hhhhc
Confidence 55553
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-25 Score=166.14 Aligned_cols=239 Identities=15% Similarity=0.183 Sum_probs=191.7
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
.+.++|..+.|.-+|+ |.++++.|.+|++|+...|.+++++.+ |...|..++.+.|+..+++|+.|..|.
T Consensus 15 ~~qgaV~avryN~dGn---------Y~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGN---------YCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNSKFASCGGDKAVQ 84 (307)
T ss_pred ccccceEEEEEccCCC---------EEEEcCCCceEEeecccccceeeeecC-CCceeeeccccccccccccCCCCceEE
Confidence 6789999999999999 999999999999999999999999999 999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCC--ceeEEeecCCCCeEEEEECCCCCEEEEEE
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENG--EEVLKFSDDVGPLQYVSASDGAKIIITAG 174 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 174 (340)
+||+.+|+..++|.+|...|..+.|+.+...+++++-+ +++||.++. ++++.+......|.++.... .-|++++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS 162 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGS 162 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeec
Confidence 99999999999999999999999999999999987655 999998764 56677766677888888754 4577766
Q ss_pred cCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC-ceEEEee
Q 036605 175 YGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP-AKITVKL 253 (340)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p-~~i~~~~ 253 (340)
. ||+++.||+| .+....-.. +++.....+ ++++..+++++.|+.+++.|-.+++.+..++. .......
T Consensus 163 ~-DGtvRtydiR--~G~l~sDy~---g~pit~vs~-----s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykl 231 (307)
T KOG0316|consen 163 V-DGTVRTYDIR--KGTLSSDYF---GHPITSVSF-----SKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKL 231 (307)
T ss_pred c-CCcEEEEEee--cceeehhhc---CCcceeEEe-----cCCCCEEEEeeccceeeecccchhHHHHHhcccccceeee
Confidence 6 9999999996 333322222 555444444 89999999999999999999999998886666 2233332
Q ss_pred cccccccccccccccccceeeeeecccccCCCeEEEecCCc
Q 036605 254 KKADADQQNSVNVKKSRTSIIAARLNDLEADGQKTITGLHD 294 (340)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 294 (340)
+- .-.+....++.. .+||.+.++...+
T Consensus 232 dc---------~l~qsdthV~sg-----SEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 232 DC---------CLNQSDTHVFSG-----SEDGKVYFWDLVD 258 (307)
T ss_pred ee---------eecccceeEEec-----cCCceEEEEEecc
Confidence 21 012223333333 3788888875544
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=186.72 Aligned_cols=203 Identities=15% Similarity=0.149 Sum_probs=165.0
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCC-EEEEEeCCCcE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGR-SLHVVGTNGMA 97 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i 97 (340)
.....|.++.|..||+ +||+|...|.|+|||..+...+..+.. |+.+|..+.|+|.++ .|++|++|+.+
T Consensus 66 rFk~~v~s~~fR~DG~---------LlaaGD~sG~V~vfD~k~r~iLR~~~a-h~apv~~~~f~~~d~t~l~s~sDd~v~ 135 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGR---------LLAAGDESGHVKVFDMKSRVILRQLYA-HQAPVHVTKFSPQDNTMLVSGSDDKVV 135 (487)
T ss_pred hhccceeEEEeecCCe---------EEEccCCcCcEEEeccccHHHHHHHhh-ccCceeEEEecccCCeEEEecCCCceE
Confidence 4567889999999999 999999999999999776666777777 999999999999655 67778888999
Q ss_pred EEEeCCCCeEEEEeecCCCCeeEEEEccCCC-EEEEecCc--EEEEECCCC-ceeEEeecCCCCeEEEEECCCCCEEEEE
Q 036605 98 SEMKSEMGEVIREFKASEKPISSSAFLCEEK-IFALASSE--VRILSLENG-EEVLKFSDDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~~--i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 173 (340)
++||+.++.....+.+|...|.|.+++|... ++++|+.+ |++||++.. ..+.++ .|..+|..+.+-|.|..|+++
T Consensus 136 k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasA 214 (487)
T KOG0310|consen 136 KYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASA 214 (487)
T ss_pred EEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEc
Confidence 9999999998668999999999999999766 55677666 999999987 444555 588999999999999988885
Q ss_pred EcCCCeEEEEEccCCCC-CccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 174 GYGEKHLQVWRCDISSK-TVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 174 ~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+ .+.|+|||+ .++ +...... .|...+.++ .+ ..++..|++|+-||.+++||+.+.+.+.
T Consensus 215 g--Gn~vkVWDl--~~G~qll~~~~---~H~KtVTcL--~l-~s~~~rLlS~sLD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 215 G--GNSVKVWDL--TTGGQLLTSMF---NHNKTVTCL--RL-ASDSTRLLSGSLDRHVKVFDTTNYKVVH 274 (487)
T ss_pred C--CCeEEEEEe--cCCceehhhhh---cccceEEEE--Ee-ecCCceEeecccccceEEEEccceEEEE
Confidence 5 489999999 433 3333222 355555555 33 4577999999999999999987766555
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=192.23 Aligned_cols=218 Identities=15% Similarity=0.221 Sum_probs=180.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+|+..+|.+..... .+...|+++.|+++|. +||+|..+|.|.|||..+.+.+..+.+.|.+.|-+++
T Consensus 201 lW~~~s~~v~~l~~----~~~~~vtSv~ws~~G~---------~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~la 267 (484)
T KOG0305|consen 201 LWSASSGSVTELCS----FGEELVTSVKWSPDGS---------HLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLA 267 (484)
T ss_pred EEecCCCceEEeEe----cCCCceEEEEECCCCC---------EEEEeecCCeEEEEehhhccccccccCCcCceeEEEe
Confidence 58888998776555 3378999999999999 9999999999999999998888888777999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEE-eecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCC
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIRE-FKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGP 157 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~ 157 (340)
|. +..+.+|+.|+.|..+|++..+.... +.+|...|+.+.|++|+.++++++.+ +.|||.....++..+..|...
T Consensus 268 W~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aA 345 (484)
T KOG0305|consen 268 WN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAA 345 (484)
T ss_pred cc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecccee
Confidence 98 77899999999999999998876655 88899999999999999999998877 999999888888999999999
Q ss_pred eEEEEECCCCCEEEEEEc--CCCeEEEEEccCCCCCccC---------C---------ce--------------------
Q 036605 158 LQYVSASDGAKIIITAGY--GEKHLQVWRCDISSKTVNK---------G---------PA-------------------- 197 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~--~d~~i~iwd~~~~~~~~~~---------~---------~~-------------------- 197 (340)
|..++|+|-..-|++.|. .|+.|++||.. ++..+. . +.
T Consensus 346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~--~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 346 VKALAWCPWQSGLLATGGGSADRCIKFWNTN--TGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred eeEeeeCCCccCceEEcCCCcccEEEEEEcC--CCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 999999997655554433 39999999983 332111 0 00
Q ss_pred --eeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 198 --LSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 198 --~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.-.+|...+..+ .+ +|||..+++|+.|.++++|++-..
T Consensus 424 ~~~l~gH~~RVl~l--a~-SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 424 VAELLGHTSRVLYL--AL-SPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeeecCCcceeEEE--EE-CCCCCEEEEecccCcEEeccccCC
Confidence 011344444444 55 899999999999999999998764
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=181.96 Aligned_cols=214 Identities=18% Similarity=0.183 Sum_probs=177.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
++|..+++++..|+ +|...|+.+.|+|+.. .+++++.|..|+||............. |.++|+.+.
T Consensus 245 ~~d~~s~q~l~~~~----Gh~kki~~v~~~~~~~---------~v~~aSad~~i~vws~~~~s~~~~~~~-h~~~V~~ls 310 (506)
T KOG0289|consen 245 LFDKPSNQILATLK----GHTKKITSVKFHKDLD---------TVITASADEIIRVWSVPLSSEPTSSRP-HEEPVTGLS 310 (506)
T ss_pred EEecchhhhhhhcc----CcceEEEEEEeccchh---------heeecCCcceEEeeccccccCcccccc-ccccceeee
Confidence 46777888888888 8999999999999998 899999999999999887776655665 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC--CCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEeecCCC
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKAS--EKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSDDVG 156 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~ 156 (340)
.+|.|.+|++++.|+...+.|++++..+...... .-.+++.+|+|||.+++++. +.+++||+.++..+..|.+|.+
T Consensus 311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~ 390 (506)
T KOG0289|consen 311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG 390 (506)
T ss_pred eccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC
Confidence 9999999999999999999999999988776542 34589999999999998854 4499999999999999999999
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
+|..++|+.+|.|+++++. |+.|++||+|. .+....+.+ .....+.++ +| ...|.+|+.++.|=+|++++-.
T Consensus 391 ~vk~i~FsENGY~Lat~ad-d~~V~lwDLRK--l~n~kt~~l--~~~~~v~s~--~f-D~SGt~L~~~g~~l~Vy~~~k~ 462 (506)
T KOG0289|consen 391 PVKAISFSENGYWLATAAD-DGSVKLWDLRK--LKNFKTIQL--DEKKEVNSL--SF-DQSGTYLGIAGSDLQVYICKKK 462 (506)
T ss_pred ceeEEEeccCceEEEEEec-CCeEEEEEehh--hcccceeec--cccccceeE--EE-cCCCCeEEeecceeEEEEEecc
Confidence 9999999999999999888 99999999962 222333332 222223333 44 7889999999888777777643
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=194.66 Aligned_cols=244 Identities=14% Similarity=0.138 Sum_probs=178.6
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC--------------------------------C---
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT--------------------------------G--- 62 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~--------------------------------~--- 62 (340)
..|.+.|.|+.||+||+ |||+|+.||.|+||.+.. .
T Consensus 264 ~ah~gaIw~mKFS~DGK---------yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSHDGK---------YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred cccCCcEEEEEeCCCCc---------eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 37999999999999999 999999999999998765 0
Q ss_pred -------------------------eeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCC
Q 036605 63 -------------------------EMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKP 117 (340)
Q Consensus 63 -------------------------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~ 117 (340)
+.++.+.+ |.+.|.++.|+. .++|++++.|.+|++|++...+.+..|. |..-
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~G-Ht~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKG-HTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDF 411 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhc-cchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence 01122245 999999999995 5699999999999999999999988885 8999
Q ss_pred eeEEEEcc-CCCEEEEec--CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccC
Q 036605 118 ISSSAFLC-EEKIFALAS--SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNK 194 (340)
Q Consensus 118 i~~l~~~~-~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~ 194 (340)
|+|++|+| |.+++++|+ +.++||++...+.+.- .....-|++++|.|||++.+.|.. +|.+++|+.. ..+...
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~-~G~C~fY~t~--~lk~~~ 487 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTF-NGYCRFYDTE--GLKLVS 487 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEe-ccEEEEEEcc--CCeEEE
Confidence 99999999 678888865 4599999988765543 334478999999999999999888 9999999973 222211
Q ss_pred Cceeee------cCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC-ceEEEeecccccccccccccc
Q 036605 195 GPALSM------RHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP-AKITVKLKKADADQQNSVNVK 267 (340)
Q Consensus 195 ~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p-~~i~~~~~~~~~~~~~~~~~~ 267 (340)
...+.. .+. .+..+.+.. .+...|++.+.|.+|+|||+.....+..++. ....-+... .-.
T Consensus 488 ~~~I~~~~~Kk~~~~-rITG~Q~~p--~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~A---------sfs 555 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGK-RITGLQFFP--GDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISA---------SFS 555 (712)
T ss_pred eeeEeeccCccccCc-eeeeeEecC--CCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceee---------eEc
Confidence 111111 122 455553343 3333788889999999999988777766664 111111000 012
Q ss_pred cccceeeeeecccccCCCeEEEecCCc
Q 036605 268 KSRTSIIAARLNDLEADGQKTITGLHD 294 (340)
Q Consensus 268 ~~~~~i~~~~~~~~~~~~~~~~~~~~~ 294 (340)
....+|+.+. +|.++-++..+.
T Consensus 556 ~Dgk~IVs~s-----eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 556 SDGKHIVSAS-----EDSWVYIWKNDS 577 (712)
T ss_pred cCCCEEEEee-----cCceEEEEeCCC
Confidence 2345676666 788888886544
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=173.66 Aligned_cols=210 Identities=16% Similarity=0.119 Sum_probs=177.7
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
.|+.+|.+++.+|+.+ ++++|+.|....+|++.+|.....+.+ |+..|+++.|+.+|.+|++|+.+|.|.
T Consensus 62 ~H~~svFavsl~P~~~---------l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNN---------LVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLATGDMSGKVL 131 (399)
T ss_pred hcCCceEEEEeCCCCc---------eEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEecCCCccEE
Confidence 7999999999999888 999999999999999999999999998 999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
+|...++.....+...-..+.=+.|+|-+.+|+.++.+ +.+|.+.++...+.+.+|..++++=.|.|+|+.++++..
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~- 210 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD- 210 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-
Confidence 99999999888887666678889999999999886555 999999998788889999999999999999999999777
Q ss_pred CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 177 EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
|++|++|++ .+++......-..+.+...+.. ...+..++.|+.++.+++-+..+++.+...++
T Consensus 211 dgti~~Wn~--ktg~p~~~~~~~e~~~~~~~~~-----~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 211 DGTIIVWNP--KTGQPLHKITQAEGLELPCISL-----NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred CceEEEEec--CCCceeEEecccccCcCCcccc-----ccccceeEeccCCccEEEEccccceEEEecCC
Confidence 999999998 5654433332111111111112 67788899999999999998888877765554
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-25 Score=195.45 Aligned_cols=216 Identities=15% Similarity=0.212 Sum_probs=183.9
Q ss_pred CccCCCCceeee-eeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAE-WKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
+||..++..+.. +. +|.+.|.++++..-+. +|++|+.|.++++||..+|++.+.+.+ |.+.|.++
T Consensus 232 ~~~~~~~~~i~~~l~----GH~g~V~~l~~~~~~~---------~lvsgS~D~t~rvWd~~sg~C~~~l~g-h~stv~~~ 297 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLV----GHFGGVWGLAFPSGGD---------KLVSGSTDKTERVWDCSTGECTHSLQG-HTSSVRCL 297 (537)
T ss_pred EeecccceEEEeecc----CCCCCceeEEEecCCC---------EEEEEecCCcEEeEecCCCcEEEEecC-CCceEEEE
Confidence 588888887766 76 9999999999987556 799999999999999999999999998 99999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEeecCCCC
Q 036605 80 AFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSDDVGP 157 (340)
Q Consensus 80 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~ 157 (340)
... ...+++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.++++++ +.|++||+.+++.+..+.+|...
T Consensus 298 ~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 298 TID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR 373 (537)
T ss_pred Ecc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence 875 5678888999999999999999999999999999999988 66776654 45999999999999999999999
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEEccCCCC-CccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 158 LQYVSASDGAKIIITAGYGEKHLQVWRCDISSK-TVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
|.++.+.+. .++++++. |++|++||+ .++ +....+. .|...+..+ ...+.+|++++.||.|++||..
T Consensus 374 V~sl~~~~~-~~~~Sgs~-D~~IkvWdl--~~~~~c~~tl~---~h~~~v~~l-----~~~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGSL-DTTIKVWDL--RTKRKCIHTLQ---GHTSLVSSL-----LLRDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred EEEEEecCc-ceEEeeee-ccceEeecC--Cchhhhhhhhc---CCccccccc-----ccccceeEeccccccEEEeecc
Confidence 999988775 78999888 999999999 444 4444444 555555444 4567899999999999999999
Q ss_pred CCCccCCCCC
Q 036605 237 TVSQDEKTNP 246 (340)
Q Consensus 237 ~~~~~~~~~p 246 (340)
.++.+..+..
T Consensus 442 ~~~~~~~~~~ 451 (537)
T KOG0274|consen 442 EGECLRTLEG 451 (537)
T ss_pred cCceeeeecc
Confidence 9887774444
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-24 Score=168.34 Aligned_cols=224 Identities=13% Similarity=0.130 Sum_probs=175.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcC--CCcEEEEEccCCeeEEEecCCCCCCeEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTS--NGDILAVDVLTGEMKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~h~~~v~~ 78 (340)
|||..+|..+..+. .+...|..++|..... .++.++. |.+|+..++.+.+.++-+.+ |...|+.
T Consensus 40 LYd~~~g~~~~ti~----skkyG~~~~~Fth~~~---------~~i~sStk~d~tIryLsl~dNkylRYF~G-H~~~V~s 105 (311)
T KOG1446|consen 40 LYDSLSGKQVKTIN----SKKYGVDLACFTHHSN---------TVIHSSTKEDDTIRYLSLHDNKYLRYFPG-HKKRVNS 105 (311)
T ss_pred EEEcCCCceeeEee----cccccccEEEEecCCc---------eEEEccCCCCCceEEEEeecCceEEEcCC-CCceEEE
Confidence 57888888888777 6778888999976665 4666665 88999999999999999998 9999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCC--ceeEEee--
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENG--EEVLKFS-- 152 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~--~~~~~~~-- 152 (340)
++.+|-+..+++++.|++|++||++..+....+..... ..++|.|+|-++|++.+. |++||+++- .+...|.
T Consensus 106 L~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 106 LSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred EEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 99999999999999999999999997776666654433 457899999999886655 999999864 3445553
Q ss_pred -cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEE
Q 036605 153 -DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAY 231 (340)
Q Consensus 153 -~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~ 231 (340)
+.....+.+.|+|||++++.+.. .+.+.+.|. -.+.....+..... .....+.+++ .||+.++++|+.||+|+
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDA--f~G~~~~tfs~~~~--~~~~~~~a~f-tPds~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDA--FDGTVKSTFSGYPN--AGNLPLSATF-TPDSKFVLSGSDDGTIH 257 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEc--cCCcEeeeEeeccC--CCCcceeEEE-CCCCcEEEEecCCCcEE
Confidence 33567899999999999999777 899999997 56665444442111 1212233366 89999999999999999
Q ss_pred EEECCCCCccCCCCC
Q 036605 232 SWDLKTVSQDEKTNP 246 (340)
Q Consensus 232 vwd~~~~~~~~~~~p 246 (340)
+|+++++.....+++
T Consensus 258 vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 258 VWNLETGKKVAVLRG 272 (311)
T ss_pred EEEcCCCcEeeEecC
Confidence 999999877764444
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-24 Score=164.65 Aligned_cols=204 Identities=15% Similarity=0.152 Sum_probs=176.4
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
+|+.+++.+.+..+|. +|++++.|.++.+|-..+|+.+.++.+ |.+.|+|+..+.+.+.|++|+.|.+++
T Consensus 8 GHERplTqiKyN~eGD---------LlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~~liTGSAD~t~k 77 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGD---------LLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSKHLITGSADQTAK 77 (327)
T ss_pred cCccccceEEecCCCc---------EEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcceeeeccccceeE
Confidence 8999999999999999 999999999999999889999999999 999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ecCc------EEEEECC-------CCceeEEeecCCCCeEEEEEC
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-ASSE------VRILSLE-------NGEEVLKFSDDVGPLQYVSAS 164 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~~------i~i~d~~-------~~~~~~~~~~~~~~v~~~~~s 164 (340)
+||+.+|+.+..++. ..+|..+.|+++|.+++. .+.. |.++|++ ..++..++..+...++.+.|.
T Consensus 78 LWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 78 LWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999999874 568999999999988765 3322 9999998 455678888888999999999
Q ss_pred CCCCEEEEEEcCCCeEEEEEccCCCC-CccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 165 DGAKIIITAGYGEKHLQVWRCDISSK-TVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 165 ~~~~~l~s~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
|-+.+|+++.. ||.|.+||++ ++ +...... .|...+.++ .+ +++..++++++.|.+.++||..+.+.+.
T Consensus 157 ~l~~~ii~Ghe-~G~is~~da~--~g~~~v~s~~---~h~~~Ind~--q~-s~d~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 157 PLGETIIAGHE-DGSISIYDAR--TGKELVDSDE---EHSSKINDL--QF-SRDRTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred ccCCEEEEecC-CCcEEEEEcc--cCceeeechh---hhccccccc--cc-cCCcceEEecccCccceeeeccceeeEE
Confidence 99999999888 9999999994 43 2222222 455566666 66 8999999999999999999998865554
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=186.93 Aligned_cols=223 Identities=13% Similarity=0.215 Sum_probs=189.6
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||..++++++++. ..-+.|..|-|.++ ++++|..+|.+.+||+.....+.++.. |.+.|..++
T Consensus 398 iWn~~t~kciRTi~------~~y~l~~~Fvpgd~---------~Iv~G~k~Gel~vfdlaS~~l~Eti~A-HdgaIWsi~ 461 (888)
T KOG0306|consen 398 IWNRDTLKCIRTIT------CGYILASKFVPGDR---------YIVLGTKNGELQVFDLASASLVETIRA-HDGAIWSIS 461 (888)
T ss_pred EEEccCcceeEEec------cccEEEEEecCCCc---------eEEEeccCCceEEEEeehhhhhhhhhc-cccceeeee
Confidence 69999999999887 23788999999999 999999999999999999988877786 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCC-----CeEEEEee-------cCCCCeeEEEEccCCCEEEE--ecCcEEEEECCCCc
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEM-----GEVIREFK-------ASEKPISSSAFLCEEKIFAL--ASSEVRILSLENGE 146 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~-----~~~~~~~~-------~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~~~ 146 (340)
.+||+..+++||.|.+|++||..- |.....+. .-...|.|+.+||||++|++ -+.++++|-+.+.+
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK 541 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK 541 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee
Confidence 999999999999999999999631 11111111 13457899999999999988 57779999999998
Q ss_pred eeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeC
Q 036605 147 EVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAE 226 (340)
Q Consensus 147 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~ 226 (340)
-...+-+|.-||.+|.++||++.+++++. |..|+||-+ .-+...+.+. .|...+..+ -| -|....+++++.
T Consensus 542 FflsLYGHkLPV~smDIS~DSklivTgSA-DKnVKiWGL--dFGDCHKS~f---AHdDSvm~V--~F-~P~~~~FFt~gK 612 (888)
T KOG0306|consen 542 FFLSLYGHKLPVLSMDISPDSKLIVTGSA-DKNVKIWGL--DFGDCHKSFF---AHDDSVMSV--QF-LPKTHLFFTCGK 612 (888)
T ss_pred eeeeecccccceeEEeccCCcCeEEeccC-CCceEEecc--ccchhhhhhh---cccCceeEE--EE-cccceeEEEecC
Confidence 88899999999999999999999999888 999999998 5677766666 888888777 66 578888999999
Q ss_pred CCcEEEEECCCCCccCCCCCce
Q 036605 227 SGVAYSWDLKTVSQDEKTNPAK 248 (340)
Q Consensus 227 dg~i~vwd~~~~~~~~~~~p~~ 248 (340)
||.|+.||...-+.+..+..+.
T Consensus 613 D~kvKqWDg~kFe~iq~L~~H~ 634 (888)
T KOG0306|consen 613 DGKVKQWDGEKFEEIQKLDGHH 634 (888)
T ss_pred cceEEeechhhhhhheeeccch
Confidence 9999999998877777555544
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=181.44 Aligned_cols=209 Identities=11% Similarity=0.130 Sum_probs=168.4
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
||..+...+..+. .|..+|..+.|+|.+ . +|++|+.|+.+++||+.+......+.+ |++.|.|.+
T Consensus 95 fD~k~r~iLR~~~----ah~apv~~~~f~~~d~t---------~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~ 160 (487)
T KOG0310|consen 95 FDMKSRVILRQLY----AHQAPVHVTKFSPQDNT---------MLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGD 160 (487)
T ss_pred eccccHHHHHHHh----hccCceeEEEecccCCe---------EEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeec
Confidence 4433333444555 799999999999988 5 899999999999999999987667888 999999999
Q ss_pred EecC-CCEEEEEeCCCcEEEEeCCCC-eEEEEeecCCCCeeEEEEccCCCEEEEecCc-EEEEECCCC-ceeEEeecCCC
Q 036605 81 FAKK-GRSLHVVGTNGMASEMKSEMG-EVIREFKASEKPISSSAFLCEEKIFALASSE-VRILSLENG-EEVLKFSDDVG 156 (340)
Q Consensus 81 ~~~~-~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~-i~i~d~~~~-~~~~~~~~~~~ 156 (340)
|+|- +..+++||.||.|++||.++. ..+.++. |..+|..+.+-|.|..+++++|. +++||+.+| +.+..+..|..
T Consensus 161 ~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~K 239 (487)
T KOG0310|consen 161 ISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNK 239 (487)
T ss_pred cccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccc
Confidence 9995 448999999999999999987 5555554 78899999999999999997776 999999855 44455666999
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
.|+|+++..++..|++++- |+.+++||+ ..-+ ....+..+..+.++ .. +|++..++.|-.+|-+.+=+.
T Consensus 240 tVTcL~l~s~~~rLlS~sL-D~~VKVfd~--t~~K----vv~s~~~~~pvLsi--av-s~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSL-DRHVKVFDT--TNYK----VVHSWKYPGPVLSI--AV-SPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred eEEEEEeecCCceEeeccc-ccceEEEEc--cceE----EEEeeecccceeeE--Ee-cCCCceEEEecccceeeeehh
Confidence 9999999999999999998 999999997 3322 23333455555554 44 789999999999997766643
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-25 Score=173.99 Aligned_cols=207 Identities=16% Similarity=0.252 Sum_probs=165.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC------------C------eeEEEecCCCCCCeEEEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT------------G------EMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~------------~------~~~~~~~~~h~~~v~~v~ 80 (340)
.|..+|.|.+|+|||. ++|+|+.|..|+|+|++. | -.++++.. |...|+++.
T Consensus 110 ~HK~~cR~aafs~DG~---------lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD-H~devn~l~ 179 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGS---------LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD-HVDEVNDLD 179 (430)
T ss_pred ecccceeeeeeCCCCc---------EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh-ccCccccee
Confidence 6899999999999999 999999999999999871 1 14566677 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEee--cCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEe---ec
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFK--ASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKF---SD 153 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~---~~ 153 (340)
|+|....|++++.|+.|++||...-....-++ ....++.++.|+|.|.+|+++... +++||+.+.++...- ..
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence 99999999999999999999987544332222 245689999999999999887655 999999988765433 56
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 154 DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 154 ~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
|.+.|+++.+++.++..++++. ||.|++||= -+...+..+. ..|....+ +...| ..+++++++.+.|..+++|
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSk-DG~IklwDG--VS~rCv~t~~--~AH~gsev-cSa~F-tkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASK-DGAIKLWDG--VSNRCVRTIG--NAHGGSEV-CSAVF-TKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred cccceeEEEecCCccEEEEecc-CCcEEeecc--ccHHHHHHHH--hhcCCcee-eeEEE-ccCCeEEeecCCcceeeee
Confidence 8899999999999998888777 999999995 3333333332 23333322 22245 8999999999999999999
Q ss_pred ECCCCCccC
Q 036605 234 DLKTVSQDE 242 (340)
Q Consensus 234 d~~~~~~~~ 242 (340)
.+.+++.+.
T Consensus 333 Ei~t~R~l~ 341 (430)
T KOG0640|consen 333 EISTGRMLK 341 (430)
T ss_pred eecCCceEE
Confidence 999877665
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=192.69 Aligned_cols=204 Identities=12% Similarity=0.087 Sum_probs=175.0
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASE 99 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~ 99 (340)
-+.+|..++|+|... .++++--+|.|++||.+-+.++.+|.. |.++|.+++|+|.+..+++||+|-.|++
T Consensus 8 kSsRvKglsFHP~rP---------wILtslHsG~IQlWDYRM~tli~rFde-HdGpVRgv~FH~~qplFVSGGDDykIkV 77 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP---------WILTSLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVDFHPTQPLFVSGGDDYKIKV 77 (1202)
T ss_pred ccccccceecCCCCC---------EEEEeecCceeeeehhhhhhHHhhhhc-cCCccceeeecCCCCeEEecCCccEEEE
Confidence 467899999999888 999999999999999999999999999 9999999999999999999999999999
Q ss_pred EeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCC
Q 036605 100 MKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGE 177 (340)
Q Consensus 100 wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d 177 (340)
|+..+.+.+.++.+|-..|..+.|++...++++++.+ |+||+..+++++..+++|...|.+.+|+|....+++++. |
T Consensus 78 WnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-D 156 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-D 156 (1202)
T ss_pred EecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc-c
Confidence 9999999999999999999999999999999987665 999999999999999999999999999999889999888 9
Q ss_pred CeEEEEEccCCCCCccCCc-----------------------e-eeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 178 KHLQVWRCDISSKTVNKGP-----------------------A-LSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 178 ~~i~iwd~~~~~~~~~~~~-----------------------~-~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
.+|+|||+..-.++....- . .-.+|...+..+ +| +|.-..+++|+.|..|++|
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa--Af-hpTlpliVSG~DDRqVKlW 233 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA--AF-HPTLPLIVSGADDRQVKLW 233 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE--Ee-cCCcceEEecCCcceeeEE
Confidence 9999999831111111100 0 011333333333 55 7888899999999999999
Q ss_pred ECCC
Q 036605 234 DLKT 237 (340)
Q Consensus 234 d~~~ 237 (340)
....
T Consensus 234 rmne 237 (1202)
T KOG0292|consen 234 RMNE 237 (1202)
T ss_pred Eecc
Confidence 8765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=200.47 Aligned_cols=202 Identities=14% Similarity=0.158 Sum_probs=161.8
Q ss_pred CCCeEEEEeecc-ccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEec-CCCEEEEEeCCCcEE
Q 036605 21 VVSYSCLACGFV-GKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAK-KGRSLHVVGTNGMAS 98 (340)
Q Consensus 21 ~~~v~~l~~sp~-~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~ 98 (340)
...+.+++|+|. +. +|++++.||+|++||+.+++.+..+.+ |.+.|++++|+| ++.+|++|+.|+.|+
T Consensus 532 ~~~v~~l~~~~~~~~---------~las~~~Dg~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~ 601 (793)
T PLN00181 532 RSKLSGICWNSYIKS---------QVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVK 601 (793)
T ss_pred cCceeeEEeccCCCC---------EEEEEeCCCeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEcCCCEEE
Confidence 467899999875 46 899999999999999999998888888 999999999997 788999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEc-cCCCEEEEecCc--EEEEECCCCc-eeEEeecCCCCeEEEEECCCCCEEEEEE
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFL-CEEKIFALASSE--VRILSLENGE-EVLKFSDDVGPLQYVSASDGAKIIITAG 174 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~~~~~~--i~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 174 (340)
+||+.++..+..+..+ ..+.++.|+ +++.++++++.+ |++||+++.+ .+..+.+|...|..+.|. ++.+|++++
T Consensus 602 iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s 679 (793)
T PLN00181 602 LWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS 679 (793)
T ss_pred EEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE
Confidence 9999999888887754 578999995 568888886554 9999998765 466778999999999997 677899988
Q ss_pred cCCCeEEEEEccCCCCCcc-CCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 175 YGEKHLQVWRCDISSKTVN-KGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
. |+.|++||++....... ..+....+|...+..+ .+ ++++.+|++|+.||.|++|+....
T Consensus 680 ~-D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v--~~-s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 680 T-DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV--GL-SVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred C-CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE--EE-cCCCCEEEEEeCCCEEEEEECCCC
Confidence 7 99999999852211100 1111111454444333 44 788899999999999999997654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-25 Score=167.97 Aligned_cols=215 Identities=11% Similarity=0.117 Sum_probs=168.0
Q ss_pred CccCC-CCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTN-DGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~-~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
|||+. ....+..|+ .|..+|.++.|++..+ ..+++++.||+|++|+...++.+.++.+ |...|...
T Consensus 87 l~d~~~~s~Pi~~~k----EH~~EV~Svdwn~~~r--------~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g-h~~~Iy~a 153 (311)
T KOG0277|consen 87 LFDLTMPSKPIHKFK----EHKREVYSVDWNTVRR--------RIFLTSSWDGTIKLWDPNRPNSVQTFNG-HNSCIYQA 153 (311)
T ss_pred EeccCCCCcchhHHH----hhhhheEEeccccccc--------eeEEeeccCCceEeecCCCCcceEeecC-CccEEEEE
Confidence 45543 233556666 7999999999998763 1688889999999999999999999999 99999999
Q ss_pred EEec-CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCC-CEEEEecCc--EEEEECCCCc-eeEEeecC
Q 036605 80 AFAK-KGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEE-KIFALASSE--VRILSLENGE-EVLKFSDD 154 (340)
Q Consensus 80 ~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~~--i~i~d~~~~~-~~~~~~~~ 154 (340)
.|+| ..+.+++++.|+.+++||++.......+..|...+.++.|+.-. ..+++++.+ |++||+++.+ ++..+.+|
T Consensus 154 ~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh 233 (311)
T KOG0277|consen 154 AFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH 233 (311)
T ss_pred ecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC
Confidence 9999 56799999999999999998655445588999999999999855 455666555 9999998754 56788999
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCC-CccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 155 VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSK-TVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 155 ~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
.-.|+.+.|||...-++++++-|-+++|||.. .+ ....... .|...+..+ -|+.-++.++++.+.|+.++||
T Consensus 234 ~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~--~~ds~~e~~~---~HtEFv~g~--Dws~~~~~~vAs~gWDe~l~Vw 306 (311)
T KOG0277|consen 234 GLAVRKVKFSPHHASLLASASYDMTVRIWDPE--RQDSAIETVD---HHTEFVCGL--DWSLFDPGQVASTGWDELLYVW 306 (311)
T ss_pred ceEEEEEecCcchhhHhhhccccceEEecccc--cchhhhhhhh---ccceEEecc--ccccccCceeeecccccceeee
Confidence 99999999999866555444449999999983 22 1122222 455555555 4544578899999999999999
Q ss_pred EC
Q 036605 234 DL 235 (340)
Q Consensus 234 d~ 235 (340)
+-
T Consensus 307 ~p 308 (311)
T KOG0277|consen 307 NP 308 (311)
T ss_pred cc
Confidence 84
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-25 Score=178.24 Aligned_cols=215 Identities=18% Similarity=0.210 Sum_probs=176.6
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+||+.+|.+...|. .++...+.|++|.|||. .+++|+.|++|..||+. |+....+++.....|.+++
T Consensus 295 lwDv~tgd~~~~y~---~~~~~S~~sc~W~pDg~---------~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYP---SGLGFSVSSCAWCPDGF---------RFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLA 361 (519)
T ss_pred eccCCcchhhhhcc---cCcCCCcceeEEccCCc---------eeEecCCCCcEEEecCC-cchhhcccccccceeEEEE
Confidence 69999999998887 45778999999999998 79999999999999986 4456667764556799999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE--ecCcEEEEECCCCceeEEeecCCCC-
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL--ASSEVRILSLENGEEVLKFSDDVGP- 157 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~~~~~~~~~~~~~~- 157 (340)
..+||+++++.+.|..|++++..+....... ....+|+++++|.+++++++ .+..+++||++..+.++++.+|...
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~ 440 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH 440 (519)
T ss_pred EcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc
Confidence 9999999999999999999998765443333 34668999999999999877 5666999999988888999888743
Q ss_pred -eEEEEECCC-CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 158 -LQYVSASDG-AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 158 -v~~~~~s~~-~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
+..-+|-.- ..++++|+. |+.|+||+. .++..+..+. +|...+..+ +|.+.+...+|+++.||+|+||..
T Consensus 441 fiIrSCFgg~~~~fiaSGSE-D~kvyIWhr--~sgkll~~Ls---GHs~~vNcV--swNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSE-DSKVYIWHR--ISGKLLAVLS---GHSKTVNCV--SWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred eEEEeccCCCCcceEEecCC-CceEEEEEc--cCCceeEeec---CCcceeeEE--ecCCCCHHHhhccCCCCeEEEecC
Confidence 444566543 356666555 999999998 5777777777 898888877 776678888999999999999986
Q ss_pred CC
Q 036605 236 KT 237 (340)
Q Consensus 236 ~~ 237 (340)
..
T Consensus 513 ~~ 514 (519)
T KOG0293|consen 513 SD 514 (519)
T ss_pred Cc
Confidence 53
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=172.47 Aligned_cols=198 Identities=13% Similarity=0.143 Sum_probs=165.1
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC-------------------------CeeEEEecCCCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT-------------------------GEMKWKSTGRHP 73 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~-------------------------~~~~~~~~~~h~ 73 (340)
+|...|-|+...+++. .+++|+.|.+|.||+.++ +..+..+.+ |.
T Consensus 191 GHk~~V~sVsv~~sgt---------r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G-Ht 260 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGT---------RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG-HT 260 (423)
T ss_pred ccccceeEEEecCCCC---------eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc-cc
Confidence 8999999999999998 899999999999999321 123445666 99
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCc---ee
Q 036605 74 GGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGE---EV 148 (340)
Q Consensus 74 ~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~---~~ 148 (340)
++|.++.|++ ...+++++.|.+|+.||+.++..+..+.. ...+.++.++|..++|++++.+ +++||.+++. ..
T Consensus 261 ~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~ 338 (423)
T KOG0313|consen 261 EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS 338 (423)
T ss_pred cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeE
Confidence 9999999997 77999999999999999999998888765 5578999999999999887666 9999998763 23
Q ss_pred EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCC
Q 036605 149 LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESG 228 (340)
Q Consensus 149 ~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg 228 (340)
..|.+|.+.|.++.|+|...+++.++..|+++++||+|. .+..+-.+. +|...++++ -| .++..+++|+.|.
T Consensus 339 ~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS-~k~plydI~---~h~DKvl~v--dW--~~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 339 QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS-TKAPLYDIA---GHNDKVLSV--DW--NEGGLIVSGGADN 410 (423)
T ss_pred EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc-CCCcceeec---cCCceEEEE--ec--cCCceEEeccCcc
Confidence 788999999999999999888777777799999999973 332333344 777888877 66 6778999999999
Q ss_pred cEEEEECC
Q 036605 229 VAYSWDLK 236 (340)
Q Consensus 229 ~i~vwd~~ 236 (340)
+|+++...
T Consensus 411 ~l~i~~~~ 418 (423)
T KOG0313|consen 411 KLRIFKGS 418 (423)
T ss_pred eEEEeccc
Confidence 99999754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-25 Score=178.03 Aligned_cols=216 Identities=17% Similarity=0.233 Sum_probs=169.3
Q ss_pred CccCCCCceeeeeeCC----CCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCe
Q 036605 1 IWSTNDGSLLAEWKQP----DGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGL 76 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~----~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v 76 (340)
|||..+|.+...++.. .-.++.+|.|+.||.|.. +||+|+.||.|.+|.+.+|.++++|..+|...|
T Consensus 239 VWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE---------MlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGv 309 (508)
T KOG0275|consen 239 VWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE---------MLASGSQDGKIKVWRIETGQCLRRFDRAHTKGV 309 (508)
T ss_pred eehhccchhhhhhhhhhhcceeecccceEEEeecccHH---------HhhccCcCCcEEEEEEecchHHHHhhhhhccCe
Confidence 6999999876433211 125788999999999998 999999999999999999999999997799999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEeecC
Q 036605 77 AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSDD 154 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~ 154 (340)
+|+.|+.|+..+++++.|.++++.-+.+|+.+..|.+|.+.|+...|+++|.++++++ ++|++|+.++.+++.+|...
T Consensus 310 t~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 310 TCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL 389 (508)
T ss_pred eEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC
Confidence 9999999999999999999999999999999999999999999999999999998754 55999999887766554321
Q ss_pred --C---------------------------------------------CCeEEEEECCCCCEEEEEEcCCCeEEEEEccC
Q 036605 155 --V---------------------------------------------GPLQYVSASDGAKIIITAGYGEKHLQVWRCDI 187 (340)
Q Consensus 155 --~---------------------------------------------~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~ 187 (340)
. +...+...+|.|.++++.+. |+.++.|.+
T Consensus 390 ~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE-D~vlYCF~~-- 466 (508)
T KOG0275|consen 390 GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE-DGVLYCFSV-- 466 (508)
T ss_pred CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEcc-CcEEEEEEe--
Confidence 1 12233444666777777666 777777776
Q ss_pred CCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 188 SSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
.++.....+. -|...++.+ .. +|....+++-+.||.+++|.
T Consensus 467 ~sG~LE~tl~---VhEkdvIGl--~H-HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 467 LSGKLERTLP---VHEKDVIGL--TH-HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCceeeeee---ccccccccc--cc-CcccchhhhhcccchhhhcC
Confidence 4444333332 333333333 33 67778889999999999984
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=161.69 Aligned_cols=220 Identities=13% Similarity=0.140 Sum_probs=175.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
||+++.+....++... +|.+.|-.++|+|... +++++++.|.+|++||...++....+.. .+.-.-+.
T Consensus 46 v~n~e~~r~~~~~~~~--gh~~svdql~w~~~~~--------d~~atas~dk~ir~wd~r~~k~~~~i~~--~~eni~i~ 113 (313)
T KOG1407|consen 46 VWNLERDRFRKELVYR--GHTDSVDQLCWDPKHP--------DLFATASGDKTIRIWDIRSGKCTARIET--KGENINIT 113 (313)
T ss_pred EEEecchhhhhhhccc--CCCcchhhheeCCCCC--------cceEEecCCceEEEEEeccCcEEEEeec--cCcceEEE
Confidence 4666666655554444 8889999999998772 2899999999999999999998888774 44556789
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE--ecCcEEEEECCCCceeEEeecCCCCe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL--ASSEVRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~~~~~~~~~~~~~~v 158 (340)
|+|+|++++.++.|..|...|.++.+.+...+. ...+..++|+-++.+++. |-|.|.|......+++..+..|+..+
T Consensus 114 wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC 192 (313)
T KOG1407|consen 114 WSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC 192 (313)
T ss_pred EcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce
Confidence 999999999999999999999998877665542 445677888877777655 33669999999999999999999999
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.++.|+|+|+||++|+. |..+.+||++ .--..+.+. .+..+ +..+ +| +.+|++|++||+|..|-|-+++++
T Consensus 193 icI~f~p~GryfA~GsA-DAlvSLWD~~--ELiC~R~is-Rldwp--VRTl--SF-S~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSA-DALVSLWDVD--ELICERCIS-RLDWP--VRTL--SF-SHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred EEEEECCCCceEeeccc-cceeeccChh--Hhhhheeec-cccCc--eEEE--Ee-ccCcceeeccCccceEEeEecccC
Confidence 99999999999999888 9999999983 221112222 12333 3333 45 899999999999999999999999
Q ss_pred CccC
Q 036605 239 SQDE 242 (340)
Q Consensus 239 ~~~~ 242 (340)
.++.
T Consensus 264 d~~~ 267 (313)
T KOG1407|consen 264 DRVW 267 (313)
T ss_pred CeEE
Confidence 8877
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=189.11 Aligned_cols=205 Identities=13% Similarity=0.099 Sum_probs=160.7
Q ss_pred eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEec-CCCE
Q 036605 9 LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAK-KGRS 87 (340)
Q Consensus 9 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~ 87 (340)
.+++|+ +|...|..|.||.++- |++++.|.+|++|++...++++.|. |...|+||+|+| |.++
T Consensus 361 P~~ef~----GHt~DILDlSWSKn~f----------LLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDry 424 (712)
T KOG0283|consen 361 PFCEFK----GHTADILDLSWSKNNF----------LLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRY 424 (712)
T ss_pred chhhhh----ccchhheecccccCCe----------eEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCc
Confidence 345566 8999999999997655 9999999999999999999999988 999999999999 8889
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEee--cC------CCC
Q 036605 88 LHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFS--DD------VGP 157 (340)
Q Consensus 88 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~--~~------~~~ 157 (340)
+++|+-||.|++|++...+++. +..-..-|++++|.|||+..++|.-+ +++|+....+....+. .| ...
T Consensus 425 FiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~r 503 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKR 503 (712)
T ss_pred EeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCce
Confidence 9999999999999998777554 44445789999999999999886544 9999998876664432 11 237
Q ss_pred eEEEEECCCCC-EEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 158 LQYVSASDGAK-IIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 158 v~~~~~s~~~~-~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
|+.+.|.|... .+++++. |..|+|||.+ ....+..+. ++....-...+.+ ..||.+|++++.|..|++|+..
T Consensus 504 ITG~Q~~p~~~~~vLVTSn-DSrIRI~d~~--~~~lv~KfK---G~~n~~SQ~~Asf-s~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTSN-DSRIRIYDGR--DKDLVHKFK---GFRNTSSQISASF-SSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred eeeeEecCCCCCeEEEecC-CCceEEEecc--chhhhhhhc---ccccCCcceeeeE-ccCCCEEEEeecCceEEEEeCC
Confidence 99999987544 3555466 9999999983 344444443 3322222233355 6799999999999999999985
Q ss_pred C
Q 036605 237 T 237 (340)
Q Consensus 237 ~ 237 (340)
.
T Consensus 577 ~ 577 (712)
T KOG0283|consen 577 S 577 (712)
T ss_pred C
Confidence 4
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-24 Score=163.30 Aligned_cols=203 Identities=13% Similarity=0.129 Sum_probs=160.2
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC-eeEEEecCCCCCCeEEEEEec-CCCEEEEEeCCCcE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG-EMKWKSTGRHPGGLAGLAFAK-KGRSLHVVGTNGMA 97 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i 97 (340)
-...+..++|+++.. ..+++++.||++++||+... ..+..++. |...|.++.|++ ++..+++++.|++|
T Consensus 59 ~~D~LfdV~Wse~~e--------~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-H~~EV~Svdwn~~~r~~~ltsSWD~Ti 129 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHE--------NQVIAASGDGSLRLFDLTMPSKPIHKFKE-HKREVYSVDWNTVRRRIFLTSSWDGTI 129 (311)
T ss_pred cccceeEeeecCCCc--------ceEEEEecCceEEEeccCCCCcchhHHHh-hhhheEEeccccccceeEEeeccCCce
Confidence 346788999999873 17999999999999996543 36777787 999999999998 45578888999999
Q ss_pred EEEeCCCCeEEEEeecCCCCeeEEEEccCC-CEEEEecC--cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEE
Q 036605 98 SEMKSEMGEVIREFKASEKPISSSAFLCEE-KIFALASS--EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAG 174 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 174 (340)
++|+..-.+.+.+|.+|...|+..+|+|.- ..++++++ .+++||++.......+..|...+.++.|+.-..+++..+
T Consensus 130 KLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 130 KLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred EeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec
Confidence 999999999999999999999999999964 55566544 499999987655556899999999999987666555555
Q ss_pred cCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 175 YGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
..|+.|++||++. -+..+..+ .+|.-.+..+.++. .....|++++.|=+++|||...
T Consensus 210 ~vd~~vr~wDir~-~r~pl~eL---~gh~~AVRkvk~Sp--h~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 210 GVDNLVRGWDIRN-LRTPLFEL---NGHGLAVRKVKFSP--HHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred CCCceEEEEehhh-ccccceee---cCCceEEEEEecCc--chhhHhhhccccceEEeccccc
Confidence 5599999999962 22222222 37777777773333 4456789999999999999874
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=175.81 Aligned_cols=216 Identities=17% Similarity=0.158 Sum_probs=177.2
Q ss_pred CCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCCCeEEEEEe
Q 036605 5 NDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPGGLAGLAFA 82 (340)
Q Consensus 5 ~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~ 82 (340)
++......|. .|...++-..|||.|. |+|+|...|+|+|||....+ +...++. ..++|..++|+
T Consensus 47 ~~~~~~~iYt----EH~~~vtVAkySPsG~---------yiASGD~sG~vRIWdtt~~~hiLKnef~v-~aG~I~Di~Wd 112 (603)
T KOG0318|consen 47 DNPASVDIYT----EHAHQVTVAKYSPSGF---------YIASGDVSGKVRIWDTTQKEHILKNEFQV-LAGPIKDISWD 112 (603)
T ss_pred CCccceeeec----cccceeEEEEeCCCce---------EEeecCCcCcEEEEeccCcceeeeeeeee-cccccccceeC
Confidence 3444445666 7899999999999999 99999999999999987644 2334444 67899999999
Q ss_pred cCCCEEEEEeCC----CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEE-EEecCc--EEEEECCCCceeEEeecCC
Q 036605 83 KKGRSLHVVGTN----GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIF-ALASSE--VRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 83 ~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~~--i~i~d~~~~~~~~~~~~~~ 155 (340)
.+++.++..++. |.+.+|| +|..+.++.+|...|.+++|-|...+= ++++.+ |.+|+-.--+--.++..|.
T Consensus 113 ~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hs 190 (603)
T KOG0318|consen 113 FDSKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHS 190 (603)
T ss_pred CCCcEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccc
Confidence 999999887754 4566666 678888999999999999999987764 555554 8888865555556678899
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 156 GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
.-|.++.|+|||.++++++. ||.+.+||= .+++....+.-...|...++.+ +| +||+..+++++.|.+++|||+
T Consensus 191 kFV~~VRysPDG~~Fat~gs-Dgki~iyDG--ktge~vg~l~~~~aHkGsIfal--sW-sPDs~~~~T~SaDkt~KIWdV 264 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGS-DGKIYIYDG--KTGEKVGELEDSDAHKGSIFAL--SW-SPDSTQFLTVSADKTIKIWDV 264 (603)
T ss_pred cceeeEEECCCCCeEEEecC-CccEEEEcC--CCccEEEEecCCCCccccEEEE--EE-CCCCceEEEecCCceEEEEEe
Confidence 99999999999999999999 999999996 5666666555455788889988 89 999999999999999999999
Q ss_pred CCCCccC
Q 036605 236 KTVSQDE 242 (340)
Q Consensus 236 ~~~~~~~ 242 (340)
.+.+.+.
T Consensus 265 s~~slv~ 271 (603)
T KOG0318|consen 265 STNSLVS 271 (603)
T ss_pred eccceEE
Confidence 9865554
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-24 Score=178.59 Aligned_cols=242 Identities=16% Similarity=0.148 Sum_probs=170.5
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe---------------------------eEEEe---
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE---------------------------MKWKS--- 68 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~---------------------------~~~~~--- 68 (340)
||+..|+++++.|.|. .|++|+.|-+|++||+.... .+..+
T Consensus 165 hgtk~Vsal~~Dp~Ga---------R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGA---------RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred CCceEEEEeeecCCCc---------eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 8999999999999997 79999999999999965311 00000
Q ss_pred ----------------------------cCCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeEE-EEee-----c
Q 036605 69 ----------------------------TGRHPGGLAGLAFAKKGR-SLHVVGTNGMASEMKSEMGEVI-REFK-----A 113 (340)
Q Consensus 69 ----------------------------~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~-~~~~-----~ 113 (340)
..+|...++|.+|+|+.+ .+++|+.||++++||+...+.. ..++ +
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 124888999999999764 7899999999999998765422 2222 2
Q ss_pred CCCCeeEEEEccCCCEEEE--ecCcEEEEECCCCce--eEEe-ecCCC--CeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 114 SEKPISSSAFLCEEKIFAL--ASSEVRILSLENGEE--VLKF-SDDVG--PLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 114 ~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~~~~--~~~~-~~~~~--~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
..-+++.++|+++|+.+|+ .++.|.+|+..+... ...+ .+|.. .|+++.||+||++|++-+. |+++++||++
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-D~tLKvWDLr 394 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF-DDTLKVWDLR 394 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC-CCceeeeecc
Confidence 3446889999999999876 566799999855422 1222 56765 8999999999999999888 9999999997
Q ss_pred CCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeC------CCcEEEEECCCCCccCCCCCceEEEeeccccccc
Q 036605 187 ISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAE------SGVAYSWDLKTVSQDEKTNPAKITVKLKKADADQ 260 (340)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~------dg~i~vwd~~~~~~~~~~~p~~i~~~~~~~~~~~ 260 (340)
. .++.+.... +-+...-.--|+| +|+..+|++|+. .|.+++||..+.+.+..+--....+...
T Consensus 395 q-~kkpL~~~t---gL~t~~~~tdc~F-SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~------ 463 (641)
T KOG0772|consen 395 Q-FKKPLNVRT---GLPTPFPGTDCCF-SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRC------ 463 (641)
T ss_pred c-cccchhhhc---CCCccCCCCcccc-CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEE------
Confidence 3 333333332 2222222233477 999999999864 4789999988876665332222222211
Q ss_pred ccccccccccceeeeeecccccCCCeEEEe
Q 036605 261 QNSVNVKKSRTSIIAARLNDLEADGQKTIT 290 (340)
Q Consensus 261 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 290 (340)
..+|....|++.. .||.+.++
T Consensus 464 ----~WhpkLNQi~~gs-----gdG~~~vy 484 (641)
T KOG0772|consen 464 ----LWHPKLNQIFAGS-----GDGTAHVY 484 (641)
T ss_pred ----eecchhhheeeec-----CCCceEEE
Confidence 2556555565554 56666666
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-23 Score=182.58 Aligned_cols=199 Identities=13% Similarity=0.142 Sum_probs=147.2
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE-------------EEecCCCCCCeEEEEEec-CCCE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK-------------WKSTGRHPGGLAGLAFAK-KGRS 87 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-------------~~~~~~h~~~v~~v~~~~-~~~~ 87 (340)
..|.....++++. .+++++.+..+..|+...+..+ ..+.+ |.+.|++++|+| ++++
T Consensus 21 ~~i~~~~~~~d~~---------~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G-H~~~V~~v~fsP~d~~~ 90 (493)
T PTZ00421 21 LNVTPSTALWDCS---------NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLG-QEGPIIDVAFNPFDPQK 90 (493)
T ss_pred eccccccccCCCC---------CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeC-CCCCEEEEEEcCCCCCE
Confidence 4555566666754 4666666666666664433221 12455 999999999999 8889
Q ss_pred EEEEeCCCcEEEEeCCCC-------eEEEEeecCCCCeeEEEEccCC-CEEEEec--CcEEEEECCCCceeEEeecCCCC
Q 036605 88 LHVVGTNGMASEMKSEMG-------EVIREFKASEKPISSSAFLCEE-KIFALAS--SEVRILSLENGEEVLKFSDDVGP 157 (340)
Q Consensus 88 l~s~~~dg~i~~wd~~~~-------~~~~~~~~~~~~i~~l~~~~~~-~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~ 157 (340)
|++|+.|+.|++||+.++ ..+..+.+|...|.+++|+|++ .+|++++ +.|++||+.+++.+..+..|...
T Consensus 91 LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 999999999999999765 2456788999999999999986 5777755 44999999999888899999999
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCe-eeeeecCCCCCCCCEEEEEe----CCCcEEE
Q 036605 158 LQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPV-AIDCKNSPNGEDGTVILAVA----ESGVAYS 232 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~s----~dg~i~v 232 (340)
|.+++|+|++.+|++++. |+.|+|||++ +++....+. .|... ...+ .| .+++..+++++ .|+.|++
T Consensus 171 V~sla~spdG~lLatgs~-Dg~IrIwD~r--sg~~v~tl~---~H~~~~~~~~--~w-~~~~~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 171 ITSLEWNLDGSLLCTTSK-DKKLNIIDPR--DGTIVSSVE---AHASAKSQRC--LW-AKRKDLIITLGCSKSQQRQIML 241 (493)
T ss_pred eEEEEEECCCCEEEEecC-CCEEEEEECC--CCcEEEEEe---cCCCCcceEE--EE-cCCCCeEEEEecCCCCCCeEEE
Confidence 999999999999999887 9999999995 333322222 34322 1122 44 45555666543 4799999
Q ss_pred EECCCCC
Q 036605 233 WDLKTVS 239 (340)
Q Consensus 233 wd~~~~~ 239 (340)
||+.+..
T Consensus 242 WDlr~~~ 248 (493)
T PTZ00421 242 WDTRKMA 248 (493)
T ss_pred EeCCCCC
Confidence 9997643
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=185.44 Aligned_cols=212 Identities=13% Similarity=0.216 Sum_probs=177.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.+|++...+. +|.+.|.|+...+ . ++++|+.|.+|++|++.++..+..+.+ |.++|+++.
T Consensus 275 vWd~~sg~C~~~l~----gh~stv~~~~~~~--~---------~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~ 338 (537)
T KOG0274|consen 275 VWDCSTGECTHSLQ----GHTSSVRCLTIDP--F---------LLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQ 338 (537)
T ss_pred eEecCCCcEEEEec----CCCceEEEEEccC--c---------eEeeccCCceEEEEeccCcceEEEecc-ccccEEEEE
Confidence 79999999999998 8999999988864 3 678899999999999999999999988 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE--ecCcEEEEECCCC-ceeEEeecCCCC
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL--ASSEVRILSLENG-EEVLKFSDDVGP 157 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~~-~~~~~~~~~~~~ 157 (340)
.+ +..+++|+.|+.|.+||+.+++.+..+.+|...|.++.+.+. ..+++ .++.|++||+.++ +++..+.+|...
T Consensus 339 ~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~ 415 (537)
T KOG0274|consen 339 LD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL 415 (537)
T ss_pred ec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc
Confidence 97 889999999999999999999999999999999999988875 56655 4555999999999 899999999998
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeec-CCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 158 LQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMR-HSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
+..+.+ .+++|++++. |++|++||. ..++....+. . +...+..+ ......+++++.||.+.+||+.
T Consensus 416 v~~l~~--~~~~Lvs~~a-D~~Ik~WD~--~~~~~~~~~~---~~~~~~v~~l-----~~~~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 416 VSSLLL--RDNFLVSSSA-DGTIKLWDA--EEGECLRTLE---GRHVGGVSAL-----ALGKEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred cccccc--ccceeEeccc-cccEEEeec--ccCceeeeec---cCCcccEEEe-----ecCcceEEEEecCCeeEEEecc
Confidence 876665 4568888777 999999998 5665555444 2 22333333 2224679999999999999999
Q ss_pred CCCccCCC
Q 036605 237 TVSQDEKT 244 (340)
Q Consensus 237 ~~~~~~~~ 244 (340)
++.....+
T Consensus 483 ~~~~~~~l 490 (537)
T KOG0274|consen 483 SGTLIRTL 490 (537)
T ss_pred cCchhhhh
Confidence 98777633
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=164.03 Aligned_cols=211 Identities=14% Similarity=0.147 Sum_probs=174.1
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
.||.++|+..+.++ .|..-|+.+.-+.-| ..++.+|+.||++++||+++...++++. .+-.++++.
T Consensus 116 ~wD~~tG~~~rk~k----~h~~~vNs~~p~rrg--------~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~ 181 (338)
T KOG0265|consen 116 GWDAETGKRIRKHK----GHTSFVNSLDPSRRG--------PQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVG 181 (338)
T ss_pred EEecccceeeehhc----cccceeeecCccccC--------CeEEEecCCCceEEEEeecccchhhccc--cceeEEEEE
Confidence 49999999999998 899999988833333 3389999999999999999888777775 355799999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE--ecCcEEEEECCCC----ceeEEeecC
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL--ASSEVRILSLENG----EEVLKFSDD 154 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~~----~~~~~~~~~ 154 (340)
|..++..+++|+-|+.|++||++.+.....+.+|..+|+.+..+|+|.++.+ .+..+++||.+-. +.+..|.+|
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~ 261 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH 261 (338)
T ss_pred ecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence 9999999999999999999999999999999999999999999999999988 5666999998643 345666655
Q ss_pred C----CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcE
Q 036605 155 V----GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVA 230 (340)
Q Consensus 155 ~----~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i 230 (340)
. ......+|+|++.++-+++. |+.+++||. ......-.+. +|...+..+ .| +|....+++++.|.+|
T Consensus 262 ~hnfeknlL~cswsp~~~~i~ags~-dr~vyvwd~--~~r~~lyklp---Gh~gsvn~~--~F-hp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 262 IHNFEKNLLKCSWSPNGTKITAGSA-DRFVYVWDT--TSRRILYKLP---GHYGSVNEV--DF-HPTEPIILSCSSDKTI 332 (338)
T ss_pred hhhhhhhcceeeccCCCCccccccc-cceEEEeec--ccccEEEEcC---CcceeEEEe--ee-cCCCcEEEEeccCcee
Confidence 4 23456789999999888777 999999997 3333333333 777777777 77 8999999999999999
Q ss_pred EEEE
Q 036605 231 YSWD 234 (340)
Q Consensus 231 ~vwd 234 (340)
++=.
T Consensus 333 ~lge 336 (338)
T KOG0265|consen 333 YLGE 336 (338)
T ss_pred Eeec
Confidence 8743
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=169.18 Aligned_cols=212 Identities=15% Similarity=0.151 Sum_probs=173.8
Q ss_pred CCceeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecC
Q 036605 6 DGSLLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKK 84 (340)
Q Consensus 6 ~g~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~ 84 (340)
+|.-..++. +|+..|.+++|-|.. - .+++|+.|++|.+|+-..-+....+.. |...|+|+.|+||
T Consensus 136 SG~SvGei~----GhSr~ins~~~KpsRPf---------Ri~T~sdDn~v~ffeGPPFKFk~s~r~-HskFV~~VRysPD 201 (603)
T KOG0318|consen 136 SGNSVGEIT----GHSRRINSVDFKPSRPF---------RIATGSDDNTVAFFEGPPFKFKSSFRE-HSKFVNCVRYSPD 201 (603)
T ss_pred CCCccceee----ccceeEeeeeccCCCce---------EEEeccCCCeEEEeeCCCeeeeecccc-cccceeeEEECCC
Confidence 455556666 899999999999876 3 599999999999998766666667776 9999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEee---cCCCCeeEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeecCCC---
Q 036605 85 GRSLHVVGTNGMASEMKSEMGEVIREFK---ASEKPISSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSDDVG--- 156 (340)
Q Consensus 85 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~~~~--- 156 (340)
|..+++++.||.|.+||-.+|+.+..+. +|++.|.+++|+||+..++++ +.+++|||..+.+.+.++.-...
T Consensus 202 G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d 281 (603)
T KOG0318|consen 202 GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED 281 (603)
T ss_pred CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence 9999999999999999999999999988 899999999999999999884 44599999999998888854332
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.--.+.|. ...|++.+. +|+|.+++. ........+. +|...+..+ .. ++++.+|++|+.||.|.-|+..
T Consensus 282 qqvG~lWq--kd~lItVSl-~G~in~ln~--~d~~~~~~i~---GHnK~ITaL--tv-~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 282 QQVGCLWQ--KDHLITVSL-SGTINYLNP--SDPSVLKVIS---GHNKSITAL--TV-SPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred eEEEEEEe--CCeEEEEEc-CcEEEEecc--cCCChhheec---ccccceeEE--EE-cCCCCEEEeeccCceEEEEecC
Confidence 22334454 457888788 999999998 3444444444 777766655 44 7899999999999999999999
Q ss_pred CCCccC
Q 036605 237 TVSQDE 242 (340)
Q Consensus 237 ~~~~~~ 242 (340)
++...+
T Consensus 351 ~g~~~~ 356 (603)
T KOG0318|consen 351 SGTSDR 356 (603)
T ss_pred Cccccc
Confidence 876655
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-23 Score=157.83 Aligned_cols=170 Identities=14% Similarity=0.158 Sum_probs=148.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
||=..+|+.+.+|. +|.+.|+|++..-+.+ +|++|+.|.++++||+++|+.+..+. ...+|..+.
T Consensus 36 vw~s~nGerlGty~----GHtGavW~~Did~~s~---------~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~ 100 (327)
T KOG0643|consen 36 VWYSLNGERLGTYD----GHTGAVWCCDIDWDSK---------HLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVD 100 (327)
T ss_pred EEEecCCceeeeec----CCCceEEEEEecCCcc---------eeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEe
Confidence 46667899999999 9999999999998888 89999999999999999999998887 567899999
Q ss_pred EecCCCEEEEEeCC-----CcEEEEeCC-------CCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCc
Q 036605 81 FAKKGRSLHVVGTN-----GMASEMKSE-------MGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGE 146 (340)
Q Consensus 81 ~~~~~~~l~s~~~d-----g~i~~wd~~-------~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~ 146 (340)
|+++|++++.+..+ +.|.++|++ ..++...+..+.+.++..-|.|-+..++++..+ |.+||+++|+
T Consensus 101 F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 101 FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc
Confidence 99999987776543 679999988 344567777778889999999999999997655 9999999986
Q ss_pred ee-EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 147 EV-LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 147 ~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
.+ ..-..|...|+.+++++|..++++++. |.+-++||++
T Consensus 181 ~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~-Dttakl~D~~ 220 (327)
T KOG0643|consen 181 ELVDSDEEHSSKINDLQFSRDRTYFITGSK-DTTAKLVDVR 220 (327)
T ss_pred eeeechhhhccccccccccCCcceEEeccc-Cccceeeecc
Confidence 55 445789999999999999999999777 9999999984
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=179.61 Aligned_cols=181 Identities=17% Similarity=0.130 Sum_probs=141.4
Q ss_pred EcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCe--------EEEEeecCCCCe
Q 036605 48 GTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKK-GRSLHVVGTNGMASEMKSEMGE--------VIREFKASEKPI 118 (340)
Q Consensus 48 g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~dg~i~~wd~~~~~--------~~~~~~~~~~~i 118 (340)
|+.++.|.+|+......+..+.+ |.+.|.+++|+|+ +.+|++|+.|+.|++||+.++. .+..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 55678999999877777778888 9999999999996 7899999999999999998642 334577899999
Q ss_pred eEEEEccCCCEE-EEe--cCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCC
Q 036605 119 SSSAFLCEEKIF-ALA--SSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKG 195 (340)
Q Consensus 119 ~~l~~~~~~~~l-~~~--~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~ 195 (340)
.+++|+|++..+ +++ ++.|++||+++++.+..+. |...|.+++|+|+|.+|++++. |+.|+|||++ +++....
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~-D~~IrIwD~R--sg~~i~t 204 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV-GKHMHIIDPR--KQEIASS 204 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec-CCEEEEEECC--CCcEEEE
Confidence 999999998765 454 4559999999998777765 5678999999999999988777 9999999994 4433332
Q ss_pred ceeeecCCCeee--eee-cCCCCCCCCEEEEEeCCC----cEEEEECCC
Q 036605 196 PALSMRHSPVAI--DCK-NSPNGEDGTVILAVAESG----VAYSWDLKT 237 (340)
Q Consensus 196 ~~~~~~~~~~~~--~~~-~~~~~~~~~~l~~~s~dg----~i~vwd~~~ 237 (340)
+. .|..... .+. ..+ ++++.++++++.|+ .|+|||+..
T Consensus 205 l~---gH~g~~~s~~v~~~~f-s~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 205 FH---IHDGGKNTKNIWIDGL-GGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred Ee---cccCCceeEEEEeeeE-cCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 22 4443221 111 123 57888899888774 799999986
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=182.52 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=138.3
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEc--CCCcEEEEEccC------------CeeEEEecCCCCCCeEEEEEec
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGT--SNGDILAVDVLT------------GEMKWKSTGRHPGGLAGLAFAK 83 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~--~dg~i~i~d~~~------------~~~~~~~~~~h~~~v~~v~~~~ 83 (340)
.|++..|.+++.+|++. .+|+|+ .||.+.||+.+. .+.+..... |.+.|+|+.|+|
T Consensus 10 ~H~~~~IfSIdv~pdg~---------~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~ 79 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGV---------KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSP 79 (942)
T ss_pred ccCCeeEEEEEecCCce---------eEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECC
Confidence 47778899999999998 799999 899999998542 224455566 999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC------------------CeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECC
Q 036605 84 KGRSLHVVGTNGMASEMKSEM------------------GEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLE 143 (340)
Q Consensus 84 ~~~~l~s~~~dg~i~~wd~~~------------------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~ 143 (340)
||++||+|++|+.|.+|.... .+.+..+.+|...|..++|+|++.+|++++-+ |.+|+..
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc
Confidence 999999999999999998762 12456688999999999999999999996554 9999999
Q ss_pred CCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 144 NGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 144 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
+.+.+..+.+|.+.|..+.|.|-|+||++-+. |++|+||+.
T Consensus 160 tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsd-Drtikvwrt 200 (942)
T KOG0973|consen 160 TFELLKVLRGHQSLVKGVSWDPIGKYFASQSD-DRTLKVWRT 200 (942)
T ss_pred cceeeeeeecccccccceEECCccCeeeeecC-CceEEEEEc
Confidence 99999999999999999999999999999888 999999996
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-23 Score=170.10 Aligned_cols=211 Identities=14% Similarity=0.136 Sum_probs=168.5
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASE 99 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~ 99 (340)
..++|.|++-+|+|. +|+.|+..|.|++|.+.+|.++..+.. |-..|+|+.|+.||.+|++||.||.|.+
T Consensus 80 ~Pg~v~al~s~n~G~---------~l~ag~i~g~lYlWelssG~LL~v~~a-HYQ~ITcL~fs~dgs~iiTgskDg~V~v 149 (476)
T KOG0646|consen 80 LPGPVHALASSNLGY---------FLLAGTISGNLYLWELSSGILLNVLSA-HYQSITCLKFSDDGSHIITGSKDGAVLV 149 (476)
T ss_pred cccceeeeecCCCce---------EEEeecccCcEEEEEeccccHHHHHHh-hccceeEEEEeCCCcEEEecCCCccEEE
Confidence 457899999999999 999999999999999999999988877 9999999999999999999999999999
Q ss_pred EeCC---------CCeEEEEeecCCCCeeEEEEccCC--CEEEE--ecCcEEEEECCCCceeEEeecCCCCeEEEEECCC
Q 036605 100 MKSE---------MGEVIREFKASEKPISSSAFLCEE--KIFAL--ASSEVRILSLENGEEVLKFSDDVGPLQYVSASDG 166 (340)
Q Consensus 100 wd~~---------~~~~~~~~~~~~~~i~~l~~~~~~--~~l~~--~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 166 (340)
|++. +-++++.|..|.-+|+++...+.| ..+++ .|+++++||+..+..+.++. .+..+.+++.+|.
T Consensus 150 W~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpa 228 (476)
T KOG0646|consen 150 WLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPA 228 (476)
T ss_pred EEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEccc
Confidence 9853 335678899999999999988764 45555 45559999999998887775 3578999999999
Q ss_pred CCEEEEEEcCCCeEEEEEccCCCCCcc-----------CCceeeecCCC--eeeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 167 AKIIITAGYGEKHLQVWRCDISSKTVN-----------KGPALSMRHSP--VAIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 167 ~~~l~s~~~~d~~i~iwd~~~~~~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
++.++.|+. +|.|.+.++-...++.. .......+|.. .+..+ .. +-||..|++|+.||.|+||
T Consensus 229 e~~~yiGt~-~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL--ai-s~DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 229 ERVVYIGTE-EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL--AI-STDGTLLLSGDEDGKVCVW 304 (476)
T ss_pred ccEEEecCC-cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE--EE-ecCccEEEeeCCCCCEEEE
Confidence 999999877 99999988732221111 11111224544 22222 22 6899999999999999999
Q ss_pred ECCCCCccCCCC
Q 036605 234 DLKTVSQDEKTN 245 (340)
Q Consensus 234 d~~~~~~~~~~~ 245 (340)
|+.+.+.+..+.
T Consensus 305 di~S~Q~iRtl~ 316 (476)
T KOG0646|consen 305 DIYSKQCIRTLQ 316 (476)
T ss_pred ecchHHHHHHHh
Confidence 999876665444
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=180.95 Aligned_cols=215 Identities=12% Similarity=0.126 Sum_probs=177.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC-----CeeEEEecC-----
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT-----GEMKWKSTG----- 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~-----~~~~~~~~~----- 70 (340)
|||+.++.++.+.. .|++.++.++.+||++ .+++|+.|.+|++||..- |.....+.-
T Consensus 438 vfdlaS~~l~Eti~----AHdgaIWsi~~~pD~~---------g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 438 VFDLASASLVETIR----AHDGAIWSISLSPDNK---------GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT 504 (888)
T ss_pred EEEeehhhhhhhhh----ccccceeeeeecCCCC---------ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence 46666777776666 7999999999999998 899999999999999641 211111111
Q ss_pred -CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCce
Q 036605 71 -RHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEE 147 (340)
Q Consensus 71 -~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~ 147 (340)
.-+..|.|+++||||++|+.+--|.+|++|-+.+-+....+.+|.-||.|+.++||++.+++++ ..|++|-+.-|.+
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC 584 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh
Confidence 1456899999999999999999999999999999999889999999999999999999999955 4499999999999
Q ss_pred eEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCC
Q 036605 148 VLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAES 227 (340)
Q Consensus 148 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d 227 (340)
-..|-+|...|.++.|-|....++++|. |+.|+-||- ..-+.+..+. +|...+... +. .|+|.+++++|.|
T Consensus 585 HKS~fAHdDSvm~V~F~P~~~~FFt~gK-D~kvKqWDg--~kFe~iq~L~---~H~~ev~cL--av-~~~G~~vvs~shD 655 (888)
T KOG0306|consen 585 HKSFFAHDDSVMSVQFLPKTHLFFTCGK-DGKVKQWDG--EKFEEIQKLD---GHHSEVWCL--AV-SPNGSFVVSSSHD 655 (888)
T ss_pred hhhhhcccCceeEEEEcccceeEEEecC-cceEEeech--hhhhhheeec---cchheeeee--EE-cCCCCeEEeccCC
Confidence 9999999999999999999888888887 999999996 3333333333 565555444 34 7999999999999
Q ss_pred CcEEEEECCC
Q 036605 228 GVAYSWDLKT 237 (340)
Q Consensus 228 g~i~vwd~~~ 237 (340)
..|++|.-..
T Consensus 656 ~sIRlwE~td 665 (888)
T KOG0306|consen 656 KSIRLWERTD 665 (888)
T ss_pred ceeEeeeccC
Confidence 9999997654
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=163.68 Aligned_cols=223 Identities=13% Similarity=0.177 Sum_probs=172.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE----EecCCCCCCe
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW----KSTGRHPGGL 76 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~----~~~~~h~~~v 76 (340)
|||. .|+.+.++. +|.+++..++|.-.... ...|++++.|.++++|..+.++..- ...+ |...|
T Consensus 129 iWd~-~Gk~~~~~~----Ght~~ik~v~~v~~n~~------~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~G-Hk~~V 196 (423)
T KOG0313|consen 129 IWDL-KGKSIKTIV----GHTGPIKSVAWVIKNSS------SCLFVSASMDQTLRLWKWNVGENKVKALKVCRG-HKRSV 196 (423)
T ss_pred EEec-CCceEEEEe----cCCcceeeeEEEecCCc------cceEEEecCCceEEEEEecCchhhhhHHhHhcc-cccce
Confidence 4665 577777887 99999998888543320 1169999999999999988876332 2235 99999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCC-------------------------CeEEEEeecCCCCeeEEEEccCCCEEE
Q 036605 77 AGLAFAKKGRSLHVVGTNGMASEMKSEM-------------------------GEVIREFKASEKPISSSAFLCEEKIFA 131 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~dg~i~~wd~~~-------------------------~~~~~~~~~~~~~i~~l~~~~~~~~l~ 131 (340)
-+++..++|..+++|+.|..|.+|+..+ +.++..+.+|..+|.++.|++.+ .++
T Consensus 197 ~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~-v~y 275 (423)
T KOG0313|consen 197 DSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT-VIY 275 (423)
T ss_pred eEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCC-ceE
Confidence 9999999999999999999999999321 23456688999999999999944 444
Q ss_pred E--ecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeee
Q 036605 132 L--ASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDC 209 (340)
Q Consensus 132 ~--~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (340)
+ .|.+|+.||+.++.....+.. .....++.++|....|++++. |..+++||.|...+... ...-.+|..++..+
T Consensus 276 S~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gss-dr~irl~DPR~~~gs~v--~~s~~gH~nwVssv 351 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSS-DRHIRLWDPRTGDGSVV--SQSLIGHKNWVSSV 351 (423)
T ss_pred eecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCC-CCceeecCCCCCCCcee--EEeeecchhhhhhe
Confidence 4 566699999999988777654 467899999999988998877 99999999864433221 11223788888877
Q ss_pred ecCCCCCCCCEEEEEeCCCcEEEEECCCCC-ccC
Q 036605 210 KNSPNGEDGTVILAVAESGVAYSWDLKTVS-QDE 242 (340)
Q Consensus 210 ~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~-~~~ 242 (340)
.|...+...|++|+.|+++++||+++.. .+.
T Consensus 352 --kwsp~~~~~~~S~S~D~t~klWDvRS~k~ply 383 (423)
T KOG0313|consen 352 --KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY 383 (423)
T ss_pred --ecCCCCceEEEEEecCCeEEEEEeccCCCcce
Confidence 6745566778999999999999998755 444
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=183.39 Aligned_cols=202 Identities=14% Similarity=0.141 Sum_probs=162.7
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC------------------CeeEEEecCCCCCCeEEEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT------------------GEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~------------------~~~~~~~~~~h~~~v~~v~ 80 (340)
.|.+.|+|+.|+|||+ +||+|+.|+.|.||.... -+....+.+ |.+.|..++
T Consensus 67 ~h~~sv~CVR~S~dG~---------~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~ 136 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGS---------YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVN 136 (942)
T ss_pred cccCceeEEEECCCCC---------eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceec
Confidence 7999999999999999 999999999999999762 124556677 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCce-----------
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEE----------- 147 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~----------- 147 (340)
|+|++.+|++++.|++|.+|+..+.+.+..+.+|...|-.+.|.|-|+++++.+ ++|++|.+.+-..
T Consensus 137 Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~ 216 (942)
T KOG0973|consen 137 WSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES 216 (942)
T ss_pred cCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence 999999999999999999999999999999999999999999999999999944 4499998543111
Q ss_pred -----------------------------------------eEEeecCCCCeEEEEECCC------C---------CE-E
Q 036605 148 -----------------------------------------VLKFSDDVGPLQYVSASDG------A---------KI-I 170 (340)
Q Consensus 148 -----------------------------------------~~~~~~~~~~v~~~~~s~~------~---------~~-l 170 (340)
-..|.+|..++..++|+|. . .| +
T Consensus 217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i 296 (942)
T KOG0973|consen 217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI 296 (942)
T ss_pred CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence 1224478899999999763 1 12 5
Q ss_pred EEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 171 ITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 171 ~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
++.|..|+.|.||.. ...+...... .-....+.++ +| +|||..|+++|.||+|.++.+..
T Consensus 297 ~AvgSqDrSlSVW~T--~~~RPl~vi~--~lf~~SI~Dm--sW-spdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 297 AAVGSQDRSLSVWNT--ALPRPLFVIH--NLFNKSIVDM--SW-SPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EEEecCCccEEEEec--CCCCchhhhh--hhhcCceeee--eE-cCCCCeEEEEecCCeEEEEEcch
Confidence 666666999999997 2222222111 1233456777 88 99999999999999999999876
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=168.19 Aligned_cols=207 Identities=17% Similarity=0.176 Sum_probs=159.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-------eEEEecCCCCCCeEEEEEec-CCCEEEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-------MKWKSTGRHPGGLAGLAFAK-KGRSLHV 90 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-------~~~~~~~~h~~~v~~v~~~~-~~~~l~s 90 (340)
+|...-..|+|++... ..|++|+.|++|.+||+.... ....+.+ |...|..++|++ +...+.+
T Consensus 175 gH~~eg~glsWn~~~~--------g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~-h~~~VeDV~~h~~h~~lF~s 245 (422)
T KOG0264|consen 175 GHEKEGYGLSWNRQQE--------GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG-HEDVVEDVAWHPLHEDLFGS 245 (422)
T ss_pred eecccccccccccccc--------eeEeeccCCCcEEEEeccccccCCccccceEEeec-CCcceehhhccccchhhhee
Confidence 6777778899998763 179999999999999987543 2334566 999999999999 4567888
Q ss_pred EeCCCcEEEEeCC--CCeEEEEeecCCCCeeEEEEccCCCE-EEEe--cCcEEEEECCCCc-eeEEeecCCCCeEEEEEC
Q 036605 91 VGTNGMASEMKSE--MGEVIREFKASEKPISSSAFLCEEKI-FALA--SSEVRILSLENGE-EVLKFSDDVGPLQYVSAS 164 (340)
Q Consensus 91 ~~~dg~i~~wd~~--~~~~~~~~~~~~~~i~~l~~~~~~~~-l~~~--~~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~s 164 (340)
++.|+.+.+||.+ +.+......+|..++.|++|+|-+.+ ||++ +++|.+||+++.. ++..+.+|...|..+.|+
T Consensus 246 v~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS 325 (422)
T KOG0264|consen 246 VGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS 325 (422)
T ss_pred ecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence 9999999999999 45556667889999999999997655 4554 4559999999754 568899999999999999
Q ss_pred CCCCEEEEEEcCCCeEEEEEccCCCCCcc------CCce---eeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 165 DGAKIIITAGYGEKHLQVWRCDISSKTVN------KGPA---LSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 165 ~~~~~l~s~~~~d~~i~iwd~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
|+...+++++..|+.+.|||+.....++. .... .--+|...+.++ .|...+.-.+++++.|+.+.||+.
T Consensus 326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df--sWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF--SWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccc--cCCCCCCeEEEEecCCceEEEeec
Confidence 98766555555599999999943222221 0111 122566677777 775556667889999999999987
Q ss_pred C
Q 036605 236 K 236 (340)
Q Consensus 236 ~ 236 (340)
.
T Consensus 404 s 404 (422)
T KOG0264|consen 404 A 404 (422)
T ss_pred c
Confidence 6
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=162.21 Aligned_cols=215 Identities=14% Similarity=0.222 Sum_probs=172.2
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEc------cC-------------
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDV------LT------------- 61 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~------~~------------- 61 (340)
||.+++|.++.+|. +|.+.|+|+.|++.+. ++++++.|++.+||.. ..
T Consensus 174 iWs~Esg~CL~~Y~----GH~GSVNsikfh~s~~---------L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 174 IWSLESGACLATYT----GHTGSVNSIKFHNSGL---------LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred EEeeccccceeeec----ccccceeeEEeccccc---------eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 69999999999999 9999999999999999 9999999999999961 10
Q ss_pred -----------------C----eeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeE
Q 036605 62 -----------------G----EMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS 120 (340)
Q Consensus 62 -----------------~----~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 120 (340)
+ ..+..+.+ |.+.|.+..|...|+.+++++.|.+-.+||+++|+++..+.+|....+.
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtH 319 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTH 319 (481)
T ss_pred hcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccc
Confidence 0 12445666 9999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEecCc--EEEEECCCC-ceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCce
Q 036605 121 SAFLCEEKIFALASSE--VRILSLENG-EEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA 197 (340)
Q Consensus 121 l~~~~~~~~l~~~~~~--i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~ 197 (340)
++-+|..+++++.+++ .++||++.. ..+..|++|...|+++.|.-+. .+++++. |.+|+|||++ +....+..+.
T Consensus 320 cstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD-DrTvKvWdLr-NMRsplATIR 396 (481)
T KOG0300|consen 320 CSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD-DRTVKVWDLR-NMRSPLATIR 396 (481)
T ss_pred cccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC-CceEEEeeec-cccCcceeee
Confidence 9999999999987776 999999843 3457789999999999998876 5777666 9999999995 2222222222
Q ss_pred eeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 198 LSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
...+..-+.+ +..+..++.--.+..|++||+....
T Consensus 397 --tdS~~NRvav-----s~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 397 --TDSPANRVAV-----SKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred --cCCccceeEe-----ecCCceEEeccCCceEEEEecCCCc
Confidence 1222223333 3445566666666789999997643
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=153.85 Aligned_cols=210 Identities=14% Similarity=0.171 Sum_probs=153.5
Q ss_pred CCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccC-CeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCc
Q 036605 19 EPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLT-GEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGM 96 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~ 96 (340)
..+..|.+|+|||.. . ++++|+.||+|++|+++. |....+....|.++|.+++|+.||..+++|+.|+.
T Consensus 25 pP~DsIS~l~FSP~~~~---------~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADN---------LLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred CcccchheeEeccccCc---------eEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence 567899999999954 5 778999999999999987 44443433349999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEeecCCCCeeEEEEccCCC--EEEEecCc--EEEEECCCCceeEEeec-------------------
Q 036605 97 ASEMKSEMGEVIREFKASEKPISSSAFLCEEK--IFALASSE--VRILSLENGEEVLKFSD------------------- 153 (340)
Q Consensus 97 i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~--~l~~~~~~--i~i~d~~~~~~~~~~~~------------------- 153 (340)
+++||+.+++ +..+..|..+|.++.|-+... .|++++-+ |+.||++...++.++..
T Consensus 96 ~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata 174 (347)
T KOG0647|consen 96 AKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATA 174 (347)
T ss_pred eEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEec
Confidence 9999999995 567778999999999988765 66775544 99999987765543321
Q ss_pred ----------------------CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecC-----CCee
Q 036605 154 ----------------------DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRH-----SPVA 206 (340)
Q Consensus 154 ----------------------~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~ 206 (340)
....+++++...+....+.++- +|.+.|..++.... ...+.+.... ...+
T Consensus 175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi-EGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI-EGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee-cceEEEEecCCCCc--cCceeEEEeccCCCCCCce
Confidence 0123567776666666677666 88888888853211 2222222111 1113
Q ss_pred eeeec-CCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 207 IDCKN-SPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 207 ~~~~~-~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
..+.. +| +|....|++++.||++.+||-.....+.
T Consensus 252 YaVNsi~F-hP~hgtlvTaGsDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 252 YAVNSIAF-HPVHGTLVTAGSDGTFSFWDKDARTKLK 287 (347)
T ss_pred EEecceEe-ecccceEEEecCCceEEEecchhhhhhh
Confidence 33322 34 7888899999999999999987765554
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=183.03 Aligned_cols=217 Identities=14% Similarity=0.210 Sum_probs=172.3
Q ss_pred CccCCC---CceeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCe
Q 036605 1 IWSTND---GSLLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGL 76 (340)
Q Consensus 1 vwd~~~---g~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v 76 (340)
+||+.. ..++..|. .|+..++++.|++.. . +|++|+.||+|++||++..+-..++.+ ....|
T Consensus 114 vWdlnk~~rnk~l~~f~----EH~Rs~~~ldfh~tep~---------iliSGSQDg~vK~~DlR~~~S~~t~~~-nSESi 179 (839)
T KOG0269|consen 114 VWDLNKSIRNKLLTVFN----EHERSANKLDFHSTEPN---------ILISGSQDGTVKCWDLRSKKSKSTFRS-NSESI 179 (839)
T ss_pred EEecCccccchhhhHhh----hhccceeeeeeccCCcc---------EEEecCCCceEEEEeeecccccccccc-cchhh
Confidence 588876 44555666 899999999999887 6 999999999999999999887777777 88899
Q ss_pred EEEEEec-CCCEEEEEeCCCcEEEEeCCCCe-EEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEee
Q 036605 77 AGLAFAK-KGRSLHVVGTNGMASEMKSEMGE-VIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFS 152 (340)
Q Consensus 77 ~~v~~~~-~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~ 152 (340)
.+|.|+| .+..++++.+.|.+.+||++... ....+.+|.++|.|+.|+|++.+||+|+++ |+|||+.+.+.-....
T Consensus 180 RDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t 259 (839)
T KOG0269|consen 180 RDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT 259 (839)
T ss_pred hceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE
Confidence 9999999 56788888899999999998654 445688999999999999999999999988 9999998765543332
Q ss_pred c-CCCCeEEEEECCCCCEEEEEEc--CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCc
Q 036605 153 D-DVGPLQYVSASDGAKIIITAGY--GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGV 229 (340)
Q Consensus 153 ~-~~~~v~~~~~s~~~~~l~s~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~ 229 (340)
. ...++..+.|-|+..+.++.+. .|-.|+|||++ . ..+ ....-..|.+.+..+ +|.+.+...+.+++.||.
T Consensus 260 InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr--R-PYI-P~~t~~eH~~~vt~i--~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 260 INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR--R-PYI-PYATFLEHTDSVTGI--AWDSGDRINLWSCSKDGT 333 (839)
T ss_pred EeecceeeeeeeccCccchhhhhhccccceEEEEeec--c-ccc-cceeeeccCccccce--eccCCCceeeEeecCccH
Confidence 2 3478999999998877654332 37899999994 2 222 222223777777777 786777888999999998
Q ss_pred EEEEECCC
Q 036605 230 AYSWDLKT 237 (340)
Q Consensus 230 i~vwd~~~ 237 (340)
|..-.+++
T Consensus 334 v~qh~~kn 341 (839)
T KOG0269|consen 334 VLQHLFKN 341 (839)
T ss_pred HHHhhhhc
Confidence 87665554
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=164.14 Aligned_cols=202 Identities=14% Similarity=0.161 Sum_probs=173.1
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMK 101 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd 101 (340)
..++++...|... .+++|+.|..+.++|...++.+..+.+ |...|+.+.|+|+...+++++.|..|++|.
T Consensus 220 pgi~ald~~~s~~---------~ilTGG~d~~av~~d~~s~q~l~~~~G-h~kki~~v~~~~~~~~v~~aSad~~i~vws 289 (506)
T KOG0289|consen 220 PGITALDIIPSSS---------KILTGGEDKTAVLFDKPSNQILATLKG-HTKKITSVKFHKDLDTVITASADEIIRVWS 289 (506)
T ss_pred CCeeEEeecCCCC---------cceecCCCCceEEEecchhhhhhhccC-cceEEEEEEeccchhheeecCCcceEEeec
Confidence 4567777777655 699999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeec--CCCCeEEEEECCCCCEEEEEEcCC
Q 036605 102 SEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSD--DVGPLQYVSASDGAKIIITAGYGE 177 (340)
Q Consensus 102 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~~d 177 (340)
............|..+|+.+..+|.|.||++++.+ .-+.|++++..+..... ..-.+++.+|+|||..|.++.. |
T Consensus 290 ~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~-d 368 (506)
T KOG0289|consen 290 VPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP-D 368 (506)
T ss_pred cccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC-C
Confidence 98887777788999999999999999999997776 77889999988766643 2245899999999988888666 9
Q ss_pred CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 178 KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 178 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+.|+|||+ ..+.....+. +|...+..+ .| +.+|.+|++++.|+.|++||++..+...
T Consensus 369 ~~vkiwdl--ks~~~~a~Fp---ght~~vk~i--~F-sENGY~Lat~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 369 GVVKIWDL--KSQTNVAKFP---GHTGPVKAI--SF-SENGYWLATAADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred ceEEEEEc--CCccccccCC---CCCCceeEE--Ee-ccCceEEEEEecCCeEEEEEehhhcccc
Confidence 99999999 4444455555 687777777 77 8999999999999999999998866555
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=167.10 Aligned_cols=202 Identities=16% Similarity=0.175 Sum_probs=166.0
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
.|...+.|++.|+|++ |||+|+.|..|.||+..+.+.+..+.+ |.+.|.+++|-.....||+++.|..|+
T Consensus 200 ~h~keil~~avS~Dgk---------ylatgg~d~~v~Iw~~~t~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvk 269 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGK---------YLATGGRDRHVQIWDCDTLEHVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVK 269 (479)
T ss_pred cccceeEEEEEcCCCc---------EEEecCCCceEEEecCcccchhhcccc-cccceeeeeeecCccceeeeecCCceE
Confidence 6888999999999999 999999999999999999999999998 999999999998888999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
+|+++....+.++.+|+..|.+|....-++.+.+++++ +++|++... .-..|.++.+.+.+++|-.+. .+++++.
T Consensus 270 vw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~-HfvsGSd- 346 (479)
T KOG0299|consen 270 VWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDE-HFVSGSD- 346 (479)
T ss_pred EEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEeccc-ceeeccC-
Confidence 99999888888899999999999988888777666555 999999443 335678889999999998765 7888777
Q ss_pred CCeEEEEEccCCCCCccCCceeee---------cCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 177 EKHLQVWRCDISSKTVNKGPALSM---------RHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
+|.|.+|++ ..+..+....... .++.++..+ +. .+....+++|+.+|.|++|.+..+
T Consensus 347 nG~IaLWs~--~KKkplf~~~~AHgv~~~~~~~~~~~Witsl--a~-i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 347 NGSIALWSL--LKKKPLFTSRLAHGVIPELDPVNGNFWITSL--AV-IPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred CceEEEeee--cccCceeEeeccccccCCccccccccceeee--Ee-cccCceEEecCCCCceEEEEecCC
Confidence 999999998 4443332221111 111133333 22 577789999999999999998875
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-24 Score=184.32 Aligned_cols=209 Identities=15% Similarity=0.209 Sum_probs=180.5
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
.|...|.|+..-..++ .+++|+.|..+-+|.+.....+..|.+ |.++|.++.|+++..+|++|+.+|.|+
T Consensus 26 ~hsaav~~lk~~~s~r---------~~~~Gg~~~k~~L~~i~kp~~i~S~~~-hespIeSl~f~~~E~LlaagsasgtiK 95 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSR---------SLVTGGEDEKVNLWAIGKPNAITSLTG-HESPIESLTFDTSERLLAAGSASGTIK 95 (825)
T ss_pred hhhhhhceeeeeccce---------eeccCCCceeeccccccCCchhheeec-cCCcceeeecCcchhhhcccccCCcee
Confidence 6788888888866667 899999999999999877776667787 999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
+||+..++.++++.+|...+.++.|+|-+.+.+.++ .++++||.+...+...+.+|...+..+.|+|+|++++.++.
T Consensus 96 ~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e- 174 (825)
T KOG0267|consen 96 VWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE- 174 (825)
T ss_pred eeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC-
Confidence 999999999999999999999999999999997654 44999999977788999999999999999999999999888
Q ss_pred CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 177 EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
|..++|||+ ..++....+. .|...+..+ -+ +|....++.|+.|+.+++||+++.+.+....|
T Consensus 175 d~tvki~d~--~agk~~~ef~---~~e~~v~sl--e~-hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 175 DNTVKIWDL--TAGKLSKEFK---SHEGKVQSL--EF-HPLEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred cceeeeecc--cccccccccc---ccccccccc--cc-CchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 999999998 5666666665 566666555 34 78888899999999999999997555544444
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=159.68 Aligned_cols=162 Identities=11% Similarity=0.140 Sum_probs=137.6
Q ss_pred eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE---EecCCCCCCeEEEEEecCC
Q 036605 9 LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW---KSTGRHPGGLAGLAFAKKG 85 (340)
Q Consensus 9 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~---~~~~~h~~~v~~v~~~~~~ 85 (340)
+++++. .|..+|+++.|+|... +|++|+.|++|++||.......+ .++ ...+|.++.|+|.|
T Consensus 164 vIRTlY----DH~devn~l~FHPre~---------ILiS~srD~tvKlFDfsK~saKrA~K~~q--d~~~vrsiSfHPsG 228 (430)
T KOG0640|consen 164 VIRTLY----DHVDEVNDLDFHPRET---------ILISGSRDNTVKLFDFSKTSAKRAFKVFQ--DTEPVRSISFHPSG 228 (430)
T ss_pred eEeehh----hccCcccceeecchhh---------eEEeccCCCeEEEEecccHHHHHHHHHhh--ccceeeeEeecCCC
Confidence 344554 7899999999999999 99999999999999987654332 233 34579999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEe---ecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEe-ecCC-CCe
Q 036605 86 RSLHVVGTNGMASEMKSEMGEVIREF---KASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKF-SDDV-GPL 158 (340)
Q Consensus 86 ~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~-~~~~-~~v 158 (340)
.+|+.|.....+++||+.+.+....- ..|...|+++.+++.+++.++++.+ |++||--+++++.++ ..|. ..|
T Consensus 229 efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsev 308 (430)
T KOG0640|consen 229 EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEV 308 (430)
T ss_pred ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCcee
Confidence 99999999999999999988765442 3578899999999999999887666 999999999999888 4555 568
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
.+..|..+|+|++++|. |..+++|.+.
T Consensus 309 cSa~Ftkn~kyiLsSG~-DS~vkLWEi~ 335 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSSGK-DSTVKLWEIS 335 (430)
T ss_pred eeEEEccCCeEEeecCC-cceeeeeeec
Confidence 99999999999999888 9999999993
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=155.95 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=142.9
Q ss_pred CCCCCeEEEEee---ccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q 036605 19 EPVVSYSCLACG---FVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG 95 (340)
Q Consensus 19 ~~~~~v~~l~~s---p~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg 95 (340)
+|+.+|..++|| |+|. +|++++.||.-.+-+-++|..+.+|.+ |.+.|...+.+.+....++++.|-
T Consensus 12 ghtrpvvdl~~s~itp~g~---------flisa~kd~~pmlr~g~tgdwigtfeg-hkgavw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGY---------FLISASKDGKPMLRNGDTGDWIGTFEG-HKGAVWSATLNKNATRAASAAADF 81 (334)
T ss_pred CCCcceeEEeccCCCCCce---------EEEEeccCCCchhccCCCCCcEEeeec-cCcceeeeecCchhhhhhhhcccc
Confidence 899999999997 5678 999999999999999999999999999 999999999998888899999999
Q ss_pred cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCc-eeEEeecCCCCeEEEEECCCCCEEEE
Q 036605 96 MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGE-EVLKFSDDVGPLQYVSASDGAKIIIT 172 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s 172 (340)
+-++||.-+|..++.|. |+.-|.+++|+.|.++|++++.. +++||+...+ +...+.+|.+.|..+.|....+.|++
T Consensus 82 takvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence 99999999999998885 78889999999999999998887 9999998764 45788999999999999988889999
Q ss_pred EEcCCCeEEEEEcc
Q 036605 173 AGYGEKHLQVWRCD 186 (340)
Q Consensus 173 ~~~~d~~i~iwd~~ 186 (340)
++. |++|++||.+
T Consensus 161 Sad-d~tVRLWD~r 173 (334)
T KOG0278|consen 161 SAD-DKTVRLWDHR 173 (334)
T ss_pred ecc-CCceEEEEec
Confidence 866 9999999995
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=160.33 Aligned_cols=202 Identities=13% Similarity=0.184 Sum_probs=168.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
+|...|+.++-..... .+.+++.|.+.+||.+++|.++.++.+ |.+.|+++.|++.+.++++++.|++-.
T Consensus 146 GHkDGiW~Vaa~~tqp---------i~gtASADhTA~iWs~Esg~CL~~Y~G-H~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQP---------ICGTASADHTARIWSLESGACLATYTG-HTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred ccccceeeehhhcCCc---------ceeecccccceeEEeeccccceeeecc-cccceeeEEeccccceEEEccCCcchH
Confidence 7888888887765555 899999999999999999999999999 999999999999999999999999999
Q ss_pred EEeC------CC----------------------------------CeEEEEeecCCCCeeEEEEccCCCEEEEe--cCc
Q 036605 99 EMKS------EM----------------------------------GEVIREFKASEKPISSSAFLCEEKIFALA--SSE 136 (340)
Q Consensus 99 ~wd~------~~----------------------------------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~--~~~ 136 (340)
+|.. .. ..++..+++|...|.+..|-..|+.++++ +++
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence 9961 11 01345678899999999999888888774 555
Q ss_pred EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCC
Q 036605 137 VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGE 216 (340)
Q Consensus 137 i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (340)
..+||+++++.+..+.+|....+.++-+|..+.+++++. |.+.++||++ +.-.....+. +|...+..+ .| .
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr-DtTFRLWDFR-eaI~sV~VFQ---GHtdtVTS~--vF--~ 366 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR-DTTFRLWDFR-EAIQSVAVFQ---GHTDTVTSV--VF--N 366 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEecc-CceeEeccch-hhcceeeeec---ccccceeEE--EE--e
Confidence 999999999999999999999999999999988888666 9999999996 3322233333 787777766 55 3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCC
Q 036605 217 DGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 217 ~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
.+..+++|+.|.+|++||++++.
T Consensus 367 ~dd~vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 367 TDDRVVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred cCCceeecCCCceEEEeeecccc
Confidence 45679999999999999998853
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-21 Score=144.20 Aligned_cols=203 Identities=16% Similarity=0.219 Sum_probs=153.2
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC------------------------------------
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT------------------------------------ 61 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~------------------------------------ 61 (340)
.||.+.|.|.+|||+|. ++|+|++|.+|++.-...
T Consensus 86 khhkgsiyc~~ws~~ge---------liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGE---------LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred cccCccEEEEEecCccC---------eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 58999999999999999 999999998888754321
Q ss_pred ----------------CeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEee----c---CCCCe
Q 036605 62 ----------------GEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK----A---SEKPI 118 (340)
Q Consensus 62 ----------------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~----~---~~~~i 118 (340)
|+..+.+.+ |.+.|.++- +-++-.+++|+.|.+|++||++-...+..+. . ....|
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sg-htghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSG-HTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecC-CcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence 111122233 555555442 1135677889999999999998776666542 1 23578
Q ss_pred eEEEEccCCCEEEEec--CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCc
Q 036605 119 SSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGP 196 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~ 196 (340)
.++++.|.|++|+++- ....+||++.++.++.|..|...|.++.|+|...|+++++. |..|++-|+...-..++...
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~sy-d~~ikltdlqgdla~el~~~ 313 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY-DMKIKLTDLQGDLAHELPIM 313 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecc-cceEEEeecccchhhcCceE
Confidence 9999999999999954 44999999999999999999999999999999999999988 99999999832111222222
Q ss_pred eeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 197 ALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.--+|....+.+ -| +|....+++.+.|.++.+|-+.
T Consensus 314 -vv~ehkdk~i~~--rw-h~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 314 -VVAEHKDKAIQC--RW-HPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred -EEEeccCceEEE--Ee-cCccceeeeccCcceEEEeccC
Confidence 222566666655 77 7888889999999999999764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=174.70 Aligned_cols=201 Identities=13% Similarity=0.134 Sum_probs=167.0
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCCCeEEEEE-ecCCCEEEEEeCCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPGGLAGLAF-AKKGRSLHVVGTNG 95 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~-~~~~~~l~s~~~dg 95 (340)
+|...|..++...+++ .|++++.|-+|.+|+...+. +...+.. |...|.|++. .++...+++||-|+
T Consensus 71 ~HsDWVNDiiL~~~~~---------tlIS~SsDtTVK~W~~~~~~~~c~stir~-H~DYVkcla~~ak~~~lvaSgGLD~ 140 (735)
T KOG0308|consen 71 HHSDWVNDIILCGNGK---------TLISASSDTTVKVWNAHKDNTFCMSTIRT-HKDYVKCLAYIAKNNELVASGGLDR 140 (735)
T ss_pred hhHhHHhhHHhhcCCC---------ceEEecCCceEEEeecccCcchhHhhhhc-ccchheeeeecccCceeEEecCCCc
Confidence 7888888888888887 79999999999999988773 4455566 9999999999 77888999999999
Q ss_pred cEEEEeCCCCe--EEEE--------ee-cCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEE
Q 036605 96 MASEMKSEMGE--VIRE--------FK-ASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVS 162 (340)
Q Consensus 96 ~i~~wd~~~~~--~~~~--------~~-~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~ 162 (340)
.|.+||+.++. .+.. +. ++..+|++++.++.|..+++|+-. +++||.++.+.+.++.+|...|..+.
T Consensus 141 ~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll 220 (735)
T KOG0308|consen 141 KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL 220 (735)
T ss_pred cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEE
Confidence 99999999873 2222 22 677889999999999777776655 99999999999999999999999999
Q ss_pred ECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 163 ASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 163 ~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.++||..++++++ ||+|++||++ ....+..+. .|...++.+ .. +++-.++++|+.||.|+.=|+.+.
T Consensus 221 ~~dDGt~~ls~sS-DgtIrlWdLg--qQrCl~T~~---vH~e~VWaL--~~-~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 221 VNDDGTRLLSASS-DGTIRLWDLG--QQRCLATYI---VHKEGVWAL--QS-SPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EcCCCCeEeecCC-CceEEeeecc--ccceeeeEE---eccCceEEE--ee-CCCcceEEecCCCCcEEecccCCc
Confidence 9999999999888 9999999993 333333333 455555555 33 577889999999999999999883
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-20 Score=146.04 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=165.9
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC--CCcE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT--NGMA 97 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--dg~i 97 (340)
....|+++.|+++|. +|++++.|.+|++||..+++.++++.. +.-.+..++|......++.++. |..|
T Consensus 13 ~~~~i~sl~fs~~G~---------~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL---------LLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred CCCceeEEEecCCCC---------EEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCceEEEccCCCCCce
Confidence 457899999999999 899999999999999999999998887 6668888999877777776665 8899
Q ss_pred EEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 98 SEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
+..++.+.+.++.|.+|...|.+|+.+|-+..+++++.+ |++||++..++...+..... ..++|+|+|-+++++..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecC
Confidence 999999999999999999999999999999888886554 99999998776655543333 35799999988887655
Q ss_pred CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 176 GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
...|++||+|.-.+.....+.+..........+ -| +++|++++..+..+.+++.|.-.+..+.
T Consensus 161 -~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l--~F-S~dGK~iLlsT~~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 161 -SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDL--EF-SPDGKSILLSTNASFIYLLDAFDGTVKS 223 (311)
T ss_pred -CCeEEEEEecccCCCCceeEccCCCCccceeee--EE-cCCCCEEEEEeCCCcEEEEEccCCcEee
Confidence 559999999755444444444332222233333 44 8999999999999999999998876544
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-23 Score=182.33 Aligned_cols=191 Identities=15% Similarity=0.186 Sum_probs=161.3
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
+|+.+|.|+.|+++.. +|++|+.+|+|++||++.++.++++.+ |...+..+.|+|-+.+.++++.|+.++
T Consensus 68 ~hespIeSl~f~~~E~---------LlaagsasgtiK~wDleeAk~vrtLtg-h~~~~~sv~f~P~~~~~a~gStdtd~~ 137 (825)
T KOG0267|consen 68 GHESPIESLTFDTSER---------LLAAGSASGTIKVWDLEEAKIVRTLTG-HLLNITSVDFHPYGEFFASGSTDTDLK 137 (825)
T ss_pred ccCCcceeeecCcchh---------hhcccccCCceeeeehhhhhhhhhhhc-cccCcceeeeccceEEeccccccccce
Confidence 8999999999999999 999999999999999999999999998 999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
+||++...+...+.+|...+..+.|+|+|++++.++.+ ++|||+..|+.+..|..|.+.+..+.|+|..-.+.+++.
T Consensus 138 iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~- 216 (825)
T KOG0267|consen 138 IWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS- 216 (825)
T ss_pred ehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC-
Confidence 99999777888899999999999999999999997664 999999999999999999999999999998866666555
Q ss_pred CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCC
Q 036605 177 EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESG 228 (340)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg 228 (340)
|+++++||+ .+-+.+.... .....+... .| .+++..+++|....
T Consensus 217 d~tv~f~dl--etfe~I~s~~---~~~~~v~~~--~f-n~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 217 DRTVRFWDL--ETFEVISSGK---PETDGVRSL--AF-NPDGKIVLSGEQIS 260 (825)
T ss_pred Cceeeeecc--ceeEEeeccC---CccCCceee--ee-cCCceeeecCchhh
Confidence 999999998 3322222111 111122222 34 78888777776554
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=165.96 Aligned_cols=207 Identities=11% Similarity=0.102 Sum_probs=170.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+||..++++..++. +|...|+++.|..... .+++|+.|.+|++||+....+..++. ....+.+|+
T Consensus 245 ~Wnvd~~r~~~TLs----GHtdkVt~ak~~~~~~---------~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~ 309 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLS----GHTDKVTAAKFKLSHS---------RVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIV 309 (459)
T ss_pred eeeccchhhhhhhc----ccccceeeehhhcccc---------ceeeccccchhhhhhhhhhheecccc--ccccccceE
Confidence 69999999999998 8999999999987765 59999999999999999988776665 334566676
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecC----
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDD---- 154 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~---- 154 (340)
.+ +..++++-.|+.|+.||+++.........+. .|+++..++++..+.+.+.+ +.++|+++......|...
T Consensus 310 ~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~ 386 (459)
T KOG0288|consen 310 CS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC 386 (459)
T ss_pred ec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence 65 5678899999999999999999888887655 89999999999999887666 999999999877776442
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCC-eeeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 155 VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSP-VAIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 155 ~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
....+.+.|||++.|+++|+. ||.|+||++ .+++....... .+.+ .+..+ .| .+.|..+++++.++.+.+|
T Consensus 387 asDwtrvvfSpd~~YvaAGS~-dgsv~iW~v--~tgKlE~~l~~--s~s~~aI~s~--~W-~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 387 ASDWTRVVFSPDGSYVAAGSA-DGSVYIWSV--FTGKLEKVLSL--STSNAAITSL--SW-NPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccccceeEECCCCceeeeccC-CCcEEEEEc--cCceEEEEecc--CCCCcceEEE--EE-cCCCchhhcccCCcceEec
Confidence 245789999999999999888 999999999 45544333332 2222 45555 77 8899999999999999999
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-21 Score=152.11 Aligned_cols=211 Identities=12% Similarity=0.130 Sum_probs=156.6
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-----------------------------------
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE----------------------------------- 63 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~----------------------------------- 63 (340)
+|...|+|++|+.||+ +||+++.|++|++|++..-.
T Consensus 84 gH~~~vt~~~FsSdGK---------~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGK---------KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred ccCCceeeeEEcCCCc---------eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 7999999999999999 99999999999999975321
Q ss_pred -eEEEe----------------------cCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeE
Q 036605 64 -MKWKS----------------------TGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS 120 (340)
Q Consensus 64 -~~~~~----------------------~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 120 (340)
.++.+ ...|+..|..+-....+.+|++++.|..|.+|++. |+.+..+......-+.
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 01100 01133445555555567789999999999999998 8888888877777888
Q ss_pred EEEccCCCEEEEecCc--EEEEECC---CC-----ceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCC-
Q 036605 121 SAFLCEEKIFALASSE--VRILSLE---NG-----EEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISS- 189 (340)
Q Consensus 121 l~~~~~~~~l~~~~~~--i~i~d~~---~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~- 189 (340)
.+++|+|+++++++-+ |++|..- .| ..+..+.+|...|..++|+++...+++.+. ||.++|||.+..-
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk-DG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK-DGKWRIWDTDVRYE 312 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec-CCcEEEeeccceEe
Confidence 9999999999998776 9999863 22 234677999999999999999999999888 9999999985321
Q ss_pred -CCc---cCCcee---eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 190 -KTV---NKGPAL---SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 190 -~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
++- +..... .-+..+.-..+ +|+|..|+... ...+.+|..++++..+.++-
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~l-----sP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLEL-----SPSGDSLAVSF-GSDLKVFASEDGKDYPELED 370 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEe-----CCCCcEEEeec-CCceEEEEcccCccchhHHH
Confidence 111 111110 11223333444 88988777655 45699999999877775554
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=162.45 Aligned_cols=204 Identities=19% Similarity=0.217 Sum_probs=163.1
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE-EEe---------------c-CCCCCCeEEEEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK-WKS---------------T-GRHPGGLAGLAF 81 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~---------------~-~~h~~~v~~v~~ 81 (340)
.|..+|+|++++|+++ +.++++.+|+|.-|++.+|+.. ..+ . ..|...|.+++.
T Consensus 140 ~H~~s~~~vals~d~~---------~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDK---------RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred cccCcceEEEeecccc---------ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 6889999999999999 8999999999999999888633 111 1 138889999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE--ecCcEEEEECCCCceeEEeecCCCCeE
Q 036605 82 AKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL--ASSEVRILSLENGEEVLKFSDDVGPLQ 159 (340)
Q Consensus 82 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~~~~~~~~~~~~~~v~ 159 (340)
++||++|++|+.|..|.+|+.++.+.+..|++|.+.|.+++|-.....+++ .++.+++|++.....+.++-+|...|.
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL 290 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence 999999999999999999999999999999999999999999876555554 566699999998888888999999999
Q ss_pred EEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 160 YVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 160 ~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
.+....-++.+-+++. |+++++|++...++. .+. ++... +++. ++ -+...+++|+.+|.|.+|++...+
T Consensus 291 ~IdaL~reR~vtVGgr-DrT~rlwKi~eesql---ifr---g~~~s-idcv-~~--In~~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGR-DRTVRLWKIPEESQL---IFR---GGEGS-IDCV-AF--INDEHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred eechhcccceEEeccc-cceeEEEecccccee---eee---CCCCC-eeeE-EE--ecccceeeccCCceEEEeeecccC
Confidence 9988877766666556 999999999322211 111 33222 2331 33 345679999999999999998766
Q ss_pred ccC
Q 036605 240 QDE 242 (340)
Q Consensus 240 ~~~ 242 (340)
.+.
T Consensus 360 plf 362 (479)
T KOG0299|consen 360 PLF 362 (479)
T ss_pred cee
Confidence 554
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=164.41 Aligned_cols=216 Identities=9% Similarity=0.110 Sum_probs=165.7
Q ss_pred CccCCCCc--eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEE
Q 036605 1 IWSTNDGS--LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~ 78 (340)
+|+...+. +...+. +-.+.++.+.|.++++ ++++++.|+.+++|++...+...++.+ |++.|++
T Consensus 201 ~W~v~~~k~~~~~tLa----Gs~g~it~~d~d~~~~---------~~iAas~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ 266 (459)
T KOG0288|consen 201 LWNVLGEKSELISTLA----GSLGNITSIDFDSDNK---------HVIAASNDKNLRLWNVDSLRLRHTLSG-HTDKVTA 266 (459)
T ss_pred hhhcccchhhhhhhhh----ccCCCcceeeecCCCc---------eEEeecCCCceeeeeccchhhhhhhcc-cccceee
Confidence 47765554 334444 5667899999999998 899999999999999999999999999 9999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeecCCC
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSDDVG 156 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~~~~ 156 (340)
+.|......+++|+.|.+|+.||+..+....++-. ...+..|..+ ...++++ +..|++||.++.........+.
T Consensus 267 ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg- 342 (459)
T KOG0288|consen 267 AKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG- 342 (459)
T ss_pred ehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-
Confidence 99988777799999999999999998776655432 2234455554 3334443 4449999999998888887665
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCcee---eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPAL---SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
.|+++..++++..+++++. |.++.+.|++ +.+....+.. ...+. ...+ .| +|++.|+++||.||.|+||
T Consensus 343 ~vtSl~ls~~g~~lLsssR-Ddtl~viDlR--t~eI~~~~sA~g~k~asD--wtrv--vf-Spd~~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 343 RVTSLDLSMDGLELLSSSR-DDTLKVIDLR--TKEIRQTFSAEGFKCASD--WTRV--VF-SPDGSYVAAGSADGSVYIW 414 (459)
T ss_pred ceeeEeeccCCeEEeeecC-CCceeeeecc--cccEEEEeeccccccccc--ccee--EE-CCCCceeeeccCCCcEEEE
Confidence 8999999999999999876 9999999995 3332222211 11111 1111 34 8999999999999999999
Q ss_pred ECCCCCccC
Q 036605 234 DLKTVSQDE 242 (340)
Q Consensus 234 d~~~~~~~~ 242 (340)
++.+++...
T Consensus 415 ~v~tgKlE~ 423 (459)
T KOG0288|consen 415 SVFTGKLEK 423 (459)
T ss_pred EccCceEEE
Confidence 999877655
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=150.10 Aligned_cols=210 Identities=15% Similarity=0.185 Sum_probs=161.2
Q ss_pred ceeeeeeCCCCCCCCCeEEEEeec--cccccccccCceEEEEEcCCCcEEEEEccCCee--EEEecCCCCCCeEEEEEec
Q 036605 8 SLLAEWKQPDGEPVVSYSCLACGF--VGKKRRKERGTLLLALGTSNGDILAVDVLTGEM--KWKSTGRHPGGLAGLAFAK 83 (340)
Q Consensus 8 ~~~~~~~~~~~~~~~~v~~l~~sp--~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~ 83 (340)
.++.+++ +|.++|..++|.. -|. +||+++.||.|.||.-++|+. ...... |.+.|++++|.|
T Consensus 47 ~ll~~L~----Gh~GPVwqv~wahPk~G~---------iLAScsYDgkVIiWke~~g~w~k~~e~~~-h~~SVNsV~wap 112 (299)
T KOG1332|consen 47 KLLAELT----GHSGPVWKVAWAHPKFGT---------ILASCSYDGKVIIWKEENGRWTKAYEHAA-HSASVNSVAWAP 112 (299)
T ss_pred eeeeEec----CCCCCeeEEeecccccCc---------EeeEeecCceEEEEecCCCchhhhhhhhh-hcccceeecccc
Confidence 4567777 9999999999965 457 999999999999999888853 233444 999999999999
Q ss_pred C--CCEEEEEeCCCcEEEEeCCCC---eEEEEeecCCCCeeEEEEccC---C-----------CEEEEecCc--EEEEEC
Q 036605 84 K--GRSLHVVGTNGMASEMKSEMG---EVIREFKASEKPISSSAFLCE---E-----------KIFALASSE--VRILSL 142 (340)
Q Consensus 84 ~--~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~i~~l~~~~~---~-----------~~l~~~~~~--i~i~d~ 142 (340)
. |-.|++++.||.|.+++.++. .......+|.-.+++++|.|. | +.|++++.+ |+||+.
T Consensus 113 heygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~ 192 (299)
T KOG1332|consen 113 HEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKF 192 (299)
T ss_pred cccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeec
Confidence 6 457899999999999988754 122346688999999999986 4 457776655 999999
Q ss_pred CCCce--eEEeecCCCCeEEEEECCCC----CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCC
Q 036605 143 ENGEE--VLKFSDDVGPLQYVSASDGA----KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGE 216 (340)
Q Consensus 143 ~~~~~--~~~~~~~~~~v~~~~~s~~~----~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (340)
.++.- ...+.+|...|+.++|.|.- .+|++++. ||++.||..+.+..+....+. ...+..+..+ +| +.
T Consensus 193 ~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq-Dg~viIwt~~~e~e~wk~tll--~~f~~~~w~v--SW-S~ 266 (299)
T KOG1332|consen 193 DSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ-DGTVIIWTKDEEYEPWKKTLL--EEFPDVVWRV--SW-SL 266 (299)
T ss_pred CCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC-CCcEEEEEecCccCccccccc--ccCCcceEEE--EE-ec
Confidence 88632 35589999999999999873 46788777 999999998522222222221 1344555555 67 88
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 036605 217 DGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 217 ~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.|..|+.++.|+.|.+|.-..
T Consensus 267 sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 267 SGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccEEEEecCCcEEEEEEeCC
Confidence 999999999999999997543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=162.03 Aligned_cols=209 Identities=18% Similarity=0.245 Sum_probs=157.5
Q ss_pred CCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCc
Q 036605 18 GEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGM 96 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~ 96 (340)
.+|...|.|++=+|.. . .+|+|+.||.|+|||+....+.+++.. |.+.|.+|++.. ..+++++.|.+
T Consensus 63 ~gHrdGV~~lakhp~~ls---------~~aSGs~DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~--~~~~tvgdDKt 130 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLS---------TVASGSCDGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQ--TSFFTVGDDKT 130 (433)
T ss_pred cccccccchhhcCcchhh---------hhhccccCceEEEEehhhhhhhheeec-ccCceeeEEecc--cceEEecCCcc
Confidence 4899999999999988 6 799999999999999999999999998 999999999985 67888999998
Q ss_pred EEEEeCCC---------------------------Ce-----------EEEEeecCCCCeeEEEEccCCCEE-EEe--cC
Q 036605 97 ASEMKSEM---------------------------GE-----------VIREFKASEKPISSSAFLCEEKIF-ALA--SS 135 (340)
Q Consensus 97 i~~wd~~~---------------------------~~-----------~~~~~~~~~~~i~~l~~~~~~~~l-~~~--~~ 135 (340)
|+.|.+.. |+ ++..+......|.++.|+|-...+ +++ ++
T Consensus 131 vK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 131 VKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred eeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 88887321 11 223333344557788888876554 444 33
Q ss_pred cEEEEECCCCceeEEe------------------------------------------ecCCCCeEEEEECCCCCEEEEE
Q 036605 136 EVRILSLENGEEVLKF------------------------------------------SDDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 136 ~i~i~d~~~~~~~~~~------------------------------------------~~~~~~v~~~~~s~~~~~l~s~ 173 (340)
.|.+||++++.++.++ .+|.+.|.++.|+|.|+-|+++
T Consensus 211 sIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred ceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence 4999999877655332 3567789999999999999998
Q ss_pred EcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 174 GYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
+. |.+|+||..+ .+.. . -.........++.+ .| +.|..++++||.|+.|++|.....+.+..+.|
T Consensus 291 sy-DksIRIf~~~--~~~S-R-diYhtkRMq~V~~V--k~-S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~ 355 (433)
T KOG0268|consen 291 SY-DKSIRIFPVN--HGHS-R-DIYHTKRMQHVFCV--KY-SMDSKYIISGSDDGNVRLWKAKASEKLGVITP 355 (433)
T ss_pred cc-cceEEEeecC--CCcc-h-hhhhHhhhheeeEE--EE-eccccEEEecCCCcceeeeecchhhhcCCCCh
Confidence 88 9999999984 2111 1 11000122234444 45 88999999999999999999988777764554
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-22 Score=166.55 Aligned_cols=204 Identities=12% Similarity=0.053 Sum_probs=148.1
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE-Ee----cCCCCCCeEEEEEecCCCEEEEEe
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW-KS----TGRHPGGLAGLAFAKKGRSLHVVG 92 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~-~~----~~~h~~~v~~v~~~~~~~~l~s~~ 92 (340)
.+|...++|.+|+|+.+ ..+++++.||+++|||+.+.+... .+ .++..-.++.++|++||+++++|+
T Consensus 265 KGHia~lt~g~whP~~k--------~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc 336 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNK--------EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC 336 (641)
T ss_pred CCceeeeeccccccCcc--------cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc
Confidence 47999999999999984 179999999999999998765222 22 222334679999999999999999
Q ss_pred CCCcEEEEeCCCCeE--E-EEeecCCC--CeeEEEEccCCCEEEEec--CcEEEEECCCCc-eeEEeecC--CCCeEEEE
Q 036605 93 TNGMASEMKSEMGEV--I-REFKASEK--PISSSAFLCEEKIFALAS--SEVRILSLENGE-EVLKFSDD--VGPLQYVS 162 (340)
Q Consensus 93 ~dg~i~~wd~~~~~~--~-~~~~~~~~--~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~-~~~~~~~~--~~~v~~~~ 162 (340)
.||.|.+|+...... . ..-++|.. .|+||.||++|++|++-+ +.+++||++..+ ++..+.+- ..+-+.++
T Consensus 337 ~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~ 416 (641)
T KOG0772|consen 337 LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCC 416 (641)
T ss_pred cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccc
Confidence 999999999754322 1 22345655 899999999999999944 449999998754 44444333 35668899
Q ss_pred ECCCCCEEEEEEcC-----CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 163 ASDGAKIIITAGYG-----EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 163 ~s~~~~~l~s~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
|||+.+.|++|.+. .+.+.+||- .+-+....+.+ . ...+. .|.| +|.-+.|++|+.||.+++|--.+
T Consensus 417 FSPd~kli~TGtS~~~~~~~g~L~f~d~--~t~d~v~ki~i--~-~aSvv--~~~W-hpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 417 FSPDDKLILTGTSAPNGMTAGTLFFFDR--MTLDTVYKIDI--S-TASVV--RCLW-HPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred cCCCceEEEecccccCCCCCceEEEEec--cceeeEEEecC--C-CceEE--EEee-cchhhheeeecCCCceEEEECcc
Confidence 99999999986542 467889986 23222222221 1 22233 3477 88888999999999999984433
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=146.25 Aligned_cols=210 Identities=12% Similarity=0.116 Sum_probs=173.2
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+||..++++..... ....-.-+.|+|+|. ++++|..|..|.+.|..+.+.....+ ..-.++-++
T Consensus 91 ~wd~r~~k~~~~i~-----~~~eni~i~wsp~g~---------~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~ 154 (313)
T KOG1407|consen 91 IWDIRSGKCTARIE-----TKGENINITWSPDGE---------YIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEIS 154 (313)
T ss_pred EEEeccCcEEEEee-----ccCcceEEEEcCCCC---------EEEEecCcccEEEEEecccceeehhc--ccceeeeee
Confidence 58888888777665 223444688999999 99999999999999999887776655 556788999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v 158 (340)
|+-++..++.....|.|.+.....-+++..+++|.....||.|+|+|+++|+|+.+ +.+||+...-+++.|.-+..+|
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpV 234 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPV 234 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCce
Confidence 99878777777777999999999999999999999999999999999999997777 9999999988889999999999
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCC---------Cc
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAES---------GV 229 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d---------g~ 229 (340)
+.+.|+.||++|++++. |..|-|=++ +++.....+ .+....+.+ .| +|...+|+-++.| |.
T Consensus 235 RTlSFS~dg~~lASaSE-Dh~IDIA~v--etGd~~~eI----~~~~~t~tV--AW-HPk~~LLAyA~ddk~~d~~reag~ 304 (313)
T KOG1407|consen 235 RTLSFSHDGRMLASASE-DHFIDIAEV--ETGDRVWEI----PCEGPTFTV--AW-HPKRPLLAYACDDKDGDSNREAGT 304 (313)
T ss_pred EEEEeccCcceeeccCc-cceEEeEec--ccCCeEEEe----eccCCceeE--Ee-cCCCceeeEEecCCCCccccccce
Confidence 99999999999999877 999999888 566554333 344455555 77 8888888877765 56
Q ss_pred EEEEECC
Q 036605 230 AYSWDLK 236 (340)
Q Consensus 230 i~vwd~~ 236 (340)
+++|-+.
T Consensus 305 vKiFG~~ 311 (313)
T KOG1407|consen 305 VKIFGLS 311 (313)
T ss_pred eEEecCC
Confidence 6666543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-21 Score=163.21 Aligned_cols=251 Identities=15% Similarity=0.140 Sum_probs=177.4
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEE--ecCCCCCCeEEEEEecCC-CEEEEEeCCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWK--STGRHPGGLAGLAFAKKG-RSLHVVGTNG 95 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~--~~~~h~~~v~~v~~~~~~-~~l~s~~~dg 95 (340)
.|...|..+.|.|... .|++++.|.++++||++++++... +.+ |.+.|.++||.|.. ..+++|+.||
T Consensus 98 aH~nAifDl~wapge~---------~lVsasGDsT~r~Wdvk~s~l~G~~~~~G-H~~SvkS~cf~~~n~~vF~tGgRDg 167 (720)
T KOG0321|consen 98 AHKNAIFDLKWAPGES---------LLVSASGDSTIRPWDVKTSRLVGGRLNLG-HTGSVKSECFMPTNPAVFCTGGRDG 167 (720)
T ss_pred cccceeEeeccCCCce---------eEEEccCCceeeeeeeccceeecceeecc-cccccchhhhccCCCcceeeccCCC
Confidence 7899999999999446 899999999999999999987765 666 99999999999965 4788999999
Q ss_pred cEEEEeCCCCe---------------------------EEEEeecCCCCeeE---EEEccCCCEEEEecC---cEEEEEC
Q 036605 96 MASEMKSEMGE---------------------------VIREFKASEKPISS---SAFLCEEKIFALASS---EVRILSL 142 (340)
Q Consensus 96 ~i~~wd~~~~~---------------------------~~~~~~~~~~~i~~---l~~~~~~~~l~~~~~---~i~i~d~ 142 (340)
.|.+||++-.. .+...+++...|.+ +.+..|...|++++. .|++||+
T Consensus 168 ~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL 247 (720)
T KOG0321|consen 168 EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDL 247 (720)
T ss_pred cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence 99999986321 11223345555655 667788888888444 4999999
Q ss_pred CCCceeE--------EeecC---CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeec
Q 036605 143 ENGEEVL--------KFSDD---VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKN 211 (340)
Q Consensus 143 ~~~~~~~--------~~~~~---~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (340)
+...... .+..| ...+.++.....|.+|++.+. |+.|+.|++..........+. ++....+.+..
T Consensus 248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~s---g~~~~sf~vks 323 (720)
T KOG0321|consen 248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFS---GKLNSSFYVKS 323 (720)
T ss_pred cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhcc---Ccccceeeeee
Confidence 8764332 22223 245677788888999999888 999999999533332222222 44444444444
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC-ceEEEeecccccccccccccccccceeeeeecccccCCCeEEEe
Q 036605 212 SPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP-AKITVKLKKADADQQNSVNVKKSRTSIIAARLNDLEADGQKTIT 290 (340)
Q Consensus 212 ~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p-~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 290 (340)
.. ++++.++++|+.|+..++|.+.+.+.-..+.- +.+.+.... .......++++. ..|..+.++
T Consensus 324 ~l-Spd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~---------w~pS~~t~v~Tc-----SdD~~~kiW 388 (720)
T KOG0321|consen 324 EL-SPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVR---------WLPSATTPVATC-----SDDFRVKIW 388 (720)
T ss_pred ec-CCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEe---------eccccCCCceee-----ccCcceEEE
Confidence 44 89999999999999999999998776654443 444444322 112223344444 378889999
Q ss_pred cCCc-chhh
Q 036605 291 GLHD-LESE 298 (340)
Q Consensus 291 ~~~~-~e~e 298 (340)
...+ ++..
T Consensus 389 ~l~~~l~e~ 397 (720)
T KOG0321|consen 389 RLSNGLEEI 397 (720)
T ss_pred eccCchhhc
Confidence 7766 4433
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=159.58 Aligned_cols=204 Identities=13% Similarity=0.120 Sum_probs=160.0
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe----------eEEEecCCCCCCeEEEEEecCC-CE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE----------MKWKSTGRHPGGLAGLAFAKKG-RS 87 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~----------~~~~~~~~h~~~v~~v~~~~~~-~~ 87 (340)
.|.+.|+.+..-|... .++|+++..+.|+|||..+-. ...++.+ |.+.-++++|++.. ..
T Consensus 122 ~h~gEVnRaRymPQnp--------~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g-H~~eg~glsWn~~~~g~ 192 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNP--------NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG-HEKEGYGLSWNRQQEGT 192 (422)
T ss_pred cCCccchhhhhCCCCC--------cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe-eccccccccccccccee
Confidence 5778888888888773 288899999999999976532 1225677 88878899999854 47
Q ss_pred EEEEeCCCcEEEEeCCCCe-------EEEEeecCCCCeeEEEEccCCCEE-EEec--CcEEEEECCC--CceeEEeecCC
Q 036605 88 LHVVGTNGMASEMKSEMGE-------VIREFKASEKPISSSAFLCEEKIF-ALAS--SEVRILSLEN--GEEVLKFSDDV 155 (340)
Q Consensus 88 l~s~~~dg~i~~wd~~~~~-------~~~~~~~~~~~i~~l~~~~~~~~l-~~~~--~~i~i~d~~~--~~~~~~~~~~~ 155 (340)
|++++.|+.|++||+.... +...+.+|...|..++|++-...+ ++++ +.+.|||+++ .+......+|.
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~ 272 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS 272 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC
Confidence 9999999999999987543 345588999999999999976555 3333 3399999994 45556678999
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 156 GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
+.+.+++|+|-+.+++++++.|++|.+||+| +-......+. +|...++.+ .|.......|++++.|+.+.|||+
T Consensus 273 ~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlR-nL~~~lh~~e---~H~dev~~V--~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATGSADKTVALWDLR-NLNKPLHTFE---GHEDEVFQV--EWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred CceeEEEeCCCCCceEEeccCCCcEEEeech-hcccCceecc---CCCcceEEE--EeCCCCCceeEecccCCcEEEEec
Confidence 9999999999887777767779999999997 3333333444 888889888 775456678899999999999999
Q ss_pred CC
Q 036605 236 KT 237 (340)
Q Consensus 236 ~~ 237 (340)
..
T Consensus 347 s~ 348 (422)
T KOG0264|consen 347 SR 348 (422)
T ss_pred cc
Confidence 87
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=167.33 Aligned_cols=203 Identities=16% Similarity=0.270 Sum_probs=162.5
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
||.+..+..++.++ +|...|.|++-..++. +++|+.|.++++|- .+++...+.+ |+..|.+++
T Consensus 85 v~~~~~~~P~~~Lk----gH~snVC~ls~~~~~~----------~iSgSWD~TakvW~--~~~l~~~l~g-H~asVWAv~ 147 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLK----GHKSNVCSLSIGEDGT----------LISGSWDSTAKVWR--IGELVYSLQG-HTASVWAVA 147 (745)
T ss_pred EEecCCCCchhhhh----ccccceeeeecCCcCc----------eEecccccceEEec--chhhhcccCC-cchheeeee
Confidence 35566666677777 8999999998877666 99999999999997 4556667888 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ecCcEEEEECCCCceeEEeecCCCCeE
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-ASSEVRILSLENGEEVLKFSDDVGPLQ 159 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~~~~~~~~~~~~~~~~v~ 159 (340)
+-|++ .++||+.|..|++|.- ++.+..|.+|...|..+++-+++.++-+ -++.|++|++ +|+.+..+.+|...+.
T Consensus 148 ~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vY 223 (745)
T KOG0301|consen 148 SLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVY 223 (745)
T ss_pred ecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEE
Confidence 99977 8999999999999975 7788899999999999999998766633 3444999999 7789999999999999
Q ss_pred EEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCC-eeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 160 YVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSP-VAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 160 ~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
++....++..++++|. |++++||+.. +... .+.++. .++++. ++ ++|. +++|++||.||||....
T Consensus 224 sis~~~~~~~Ivs~gE-DrtlriW~~~----e~~q----~I~lPttsiWsa~-~L--~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 224 SISMALSDGLIVSTGE-DRTLRIWKKD----ECVQ----VITLPTTSIWSAK-VL--LNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEecCCCCeEEEecC-CceEEEeecC----ceEE----EEecCccceEEEE-Ee--eCCC-EEEeccCceEEEEEecc
Confidence 9998788889999898 9999999962 2211 224444 233331 22 3333 78899999999998764
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-20 Score=158.98 Aligned_cols=239 Identities=21% Similarity=0.295 Sum_probs=195.1
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeec--ccc---------ccccccCceEEEEEcCCCcEEEEEccCCeeEEEec
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGF--VGK---------KRRKERGTLLLALGTSNGDILAVDVLTGEMKWKST 69 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp--~~~---------~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 69 (340)
|||+..+++..+|.|. .+.++.++++.|.- +.+ ..++...+.+++.|...|.|.+|++..|+..+++.
T Consensus 19 iw~t~~~~~~~e~~p~-~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~s 97 (541)
T KOG4547|consen 19 IWDTAKNQLQQEFAPI-ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLS 97 (541)
T ss_pred EEEccCceeeeeeccc-hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEe
Confidence 6999999999999988 57788999999941 111 11234477899999999999999999999998887
Q ss_pred -CCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCcEEEEECCCCcee
Q 036605 70 -GRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSEVRILSLENGEEV 148 (340)
Q Consensus 70 -~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~ 148 (340)
+.|.+.|+++.++.+-..|++++.|+.+..|+...+..++.++..+..+.+++++||+..+++++++|++||+++++.+
T Consensus 98 t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 98 TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASRQIKVLDIETKEVV 177 (541)
T ss_pred cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccceEEEEEccCceEE
Confidence 5799999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCeEEEEECCC-----CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEE
Q 036605 149 LKFSDDVGPLQYVSASDG-----AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILA 223 (340)
Q Consensus 149 ~~~~~~~~~v~~~~~s~~-----~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 223 (340)
..|.+|.++|+++.|..+ |.|++++...+..+.+|-++...++......+.+.+.+...+........++-.+++
T Consensus 178 ~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~~~ed~~~~l~lAs 257 (541)
T KOG4547|consen 178 ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSDSGLLEDGTIPLVLAS 257 (541)
T ss_pred EEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEeccccccccccceEEee
Confidence 999999999999999766 889999888788999999875566666777777788777766532221122233444
Q ss_pred EeCCCcEEEEECCCCCcc
Q 036605 224 VAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 224 ~s~dg~i~vwd~~~~~~~ 241 (340)
...+| +..|...+...+
T Consensus 258 t~~~g-~v~~~~~nl~~l 274 (541)
T KOG4547|consen 258 TLIPG-IVHLKLSNLIIL 274 (541)
T ss_pred eccCc-eeeeccccHHHH
Confidence 44455 555555553333
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-21 Score=154.53 Aligned_cols=205 Identities=16% Similarity=0.186 Sum_probs=150.9
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE---EEecCCCCCCeEEEEEecCC-CEEEEEeCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK---WKSTGRHPGGLAGLAFAKKG-RSLHVVGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~---~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d 94 (340)
+|...=..|+|||-.. ..|++|..-+.|++|...+|... ..+.+ |...|-.++|+|.. ..|++|+.|
T Consensus 209 ghk~EGy~LdWSp~~~--------g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~D 279 (440)
T KOG0302|consen 209 GHKGEGYGLDWSPIKT--------GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCD 279 (440)
T ss_pred ccCccceeeecccccc--------cccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeecC
Confidence 7778888999999542 14999999999999999988643 24555 99999999999954 589999999
Q ss_pred CcEEEEeCCCCeE--EEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCC---CceeEEeecCCCCeEEEEECCCC
Q 036605 95 GMASEMKSEMGEV--IREFKASEKPISSSAFLCEEKIFALASSE--VRILSLEN---GEEVLKFSDDVGPLQYVSASDGA 167 (340)
Q Consensus 95 g~i~~wd~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~---~~~~~~~~~~~~~v~~~~~s~~~ 167 (340)
|+|++||++.+.. ....++|.+.|..|.|+....+|++++.+ ++|||++. ++++..|+-|..+|+++.|+|..
T Consensus 280 gsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE 359 (440)
T ss_pred ceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc
Confidence 9999999998832 22347899999999999998888887665 99999975 56778999999999999999875
Q ss_pred CEEEEEEcCCCeEEEEEccCCCCCc------cCC-----ceeeecC--CCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 168 KIIITAGYGEKHLQVWRCDISSKTV------NKG-----PALSMRH--SPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~~~~~~~~------~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
..++.++..|.+|.|||+....... ... ..+-+-| ...+..+ .|......++++.+.|| +.||.
T Consensus 360 ~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~Kev--hWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 360 DSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEV--HWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhh--eeccCCCCeEEEecccc-eeEEE
Confidence 5444444449999999995433200 000 1111112 1122233 44344566888888999 77765
Q ss_pred C
Q 036605 235 L 235 (340)
Q Consensus 235 ~ 235 (340)
.
T Consensus 437 t 437 (440)
T KOG0302|consen 437 T 437 (440)
T ss_pred e
Confidence 3
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-21 Score=149.04 Aligned_cols=210 Identities=12% Similarity=0.130 Sum_probs=163.8
Q ss_pred CCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCe----------eEEEe----cCCCCCCeEEEEEe
Q 036605 18 GEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGE----------MKWKS----TGRHPGGLAGLAFA 82 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~----------~~~~~----~~~h~~~v~~v~~~ 82 (340)
..|.+.|..|...+.. + |+++|+.||.|.+||+++.. .++.+ ...|.-.|..+.|-
T Consensus 40 r~HgGsvNsL~id~tegr---------ymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGR---------YMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY 110 (397)
T ss_pred ccCCCccceeeeccccce---------EEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe
Confidence 3577889999988765 7 99999999999999997643 11111 22477889999999
Q ss_pred c-CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccC---CCEEEEecCc--EEEEECCCCceeEEeecCCC
Q 036605 83 K-KGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCE---EKIFALASSE--VRILSLENGEEVLKFSDDVG 156 (340)
Q Consensus 83 ~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~ 156 (340)
| |...+.+++.|.++++||..+.+....|+. ++.|++-+++|- ..+++++.++ |++-|+.+|.....+.+|..
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 9 555778889999999999999888877764 556788788874 3345555444 99999999999999999999
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCC----------CccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSK----------TVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAE 226 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~ 226 (340)
.|.++.|+|...+++..+..||.|++||+|..++ +..........|...+..+ +| ..++.++++.+.
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl--a~-tSd~~~l~~~gt 266 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL--AW-TSDARYLASCGT 266 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeee--ee-cccchhhhhccC
Confidence 9999999999999888888899999999975432 1111222223455566666 77 789999999999
Q ss_pred CCcEEEEECCCCCc
Q 036605 227 SGVAYSWDLKTVSQ 240 (340)
Q Consensus 227 dg~i~vwd~~~~~~ 240 (340)
|.++++|+..+++.
T Consensus 267 d~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 267 DDRIRVWNMESGRN 280 (397)
T ss_pred ccceEEeecccCcc
Confidence 99999999988654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=166.31 Aligned_cols=198 Identities=17% Similarity=0.308 Sum_probs=165.6
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEec--CCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKST--GRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
....++|++.++.|. +.+.|+..|+|-+||+++|-...++. ..|.++|++++...-++.+++++.+|.+
T Consensus 447 ~~~~~~av~vs~CGN---------F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil 517 (910)
T KOG1539|consen 447 DDINATAVCVSFCGN---------FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGIL 517 (910)
T ss_pred cCcceEEEEEeccCc---------eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceE
Confidence 347899999999999 99999999999999999998777773 2499999999999888999999999999
Q ss_pred EEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 98 SEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
.+||......+..+.. ..++.++..+.....++.+-.+ |+++|..+.+.++.|.+|...|+++.|||||++|++++.
T Consensus 518 kfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm 596 (910)
T KOG1539|consen 518 KFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM 596 (910)
T ss_pred EEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec
Confidence 9999998887777764 4567788888777777664444 999999999999999999999999999999999999888
Q ss_pred CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCC-CcEEEEECCC
Q 036605 176 GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAES-GVAYSWDLKT 237 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d-g~i~vwd~~~ 237 (340)
|++|++||+ .++..+..+. +..+...+.+ +|+|.+|++...| .-|++|.-..
T Consensus 597 -D~tIr~wDl--pt~~lID~~~--vd~~~~sls~-----SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 597 -DSTIRTWDL--PTGTLIDGLL--VDSPCTSLSF-----SPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred -CCcEEEEec--cCcceeeeEe--cCCcceeeEE-----CCCCCEEEEEEecCceEEEEEchh
Confidence 999999999 5655544333 2344444444 9999999999998 4599996544
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=149.74 Aligned_cols=210 Identities=16% Similarity=0.191 Sum_probs=153.6
Q ss_pred eEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 036605 24 YSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSE 103 (340)
Q Consensus 24 v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~ 103 (340)
..|+.|++.|. +||+|+.||.|.|||+.+......+.+ |..+|.+++|++||+.|++++.|..|.+||+.
T Consensus 26 a~~~~Fs~~G~---------~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 26 AECCQFSRWGD---------YLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred cceEEeccCcc---------eeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence 68999999999 999999999999999999887777777 99999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCee-----------------------------------------------EEEEccCCCEEEEecCc
Q 036605 104 MGEVIREFKASEKPIS-----------------------------------------------SSAFLCEEKIFALASSE 136 (340)
Q Consensus 104 ~~~~~~~~~~~~~~i~-----------------------------------------------~l~~~~~~~~l~~~~~~ 136 (340)
.|.+++.+.. .++|. +..|.+.|+++++|...
T Consensus 96 ~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 96 KGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred CCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCc
Confidence 8876655321 11111 11244567788776554
Q ss_pred --EEEEECCCCceeEEeecCC-CCeEEEEECCCCCEEEEEEcCCCeEEEEEccC-CCCCccCCceeeecCCCeee--e-e
Q 036605 137 --VRILSLENGEEVLKFSDDV-GPLQYVSASDGAKIIITAGYGEKHLQVWRCDI-SSKTVNKGPALSMRHSPVAI--D-C 209 (340)
Q Consensus 137 --i~i~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~--~-~ 209 (340)
+.+||..+.+.+..++... ..|..+.|+-.|++|+.-.. |+.|+.|++.. .....-..+.........+. . -
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts-DRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk 253 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS-DRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK 253 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC-CceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence 9999999998888886555 78999999999999999777 99999999841 11100000000000001111 1 1
Q ss_pred ecCCCCCCCCEEEEEeCC-CcEEEEECCCCCccCCCCC
Q 036605 210 KNSPNGEDGTVILAVAES-GVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 210 ~~~~~~~~~~~l~~~s~d-g~i~vwd~~~~~~~~~~~p 246 (340)
.|+| +.+|.|+++++.. ..++||.-..+..+..+..
T Consensus 254 ~ccf-s~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 254 KCCF-SGDGEYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred heee-cCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence 2355 7799999887753 5699999888777664433
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=154.60 Aligned_cols=206 Identities=13% Similarity=0.111 Sum_probs=158.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe----eEEEecCCCCCCeEEEEEecC-CCEEEEEeC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE----MKWKSTGRHPGGLAGLAFAKK-GRSLHVVGT 93 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~ 93 (340)
-+..+|+|++|+|... ..++|+|...|.|-+||+.+.+ -+..+.. |.++|.++.|+|. ...+++.+.
T Consensus 184 v~~~Rit~l~fHPt~~-------~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTEN-------RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ecccceEEEEecccCc-------ceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheeeecc
Confidence 5678999999999873 1299999999999999995221 3445566 9999999999994 458999999
Q ss_pred CCcEEEEeCCCCeEEEE--eecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCce-eEEeecCCCCeEEEEECCCCC
Q 036605 94 NGMASEMKSEMGEVIRE--FKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEE-VLKFSDDVGPLQYVSASDGAK 168 (340)
Q Consensus 94 dg~i~~wd~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~ 168 (340)
||+|+.-|++.+..... .......++.+.|+.+...++.++.- +.+||++++.. ...+..|...|.+++++|-..
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence 99999999987643222 32245567888888888777775543 89999998765 566678888999999999887
Q ss_pred EEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 169 IIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 169 ~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
++++++..|++.+|||+|.-.++.. .+...+.|...+.+. +| +|.+..|++.+.|..|+|||..
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~s-p~lst~~HrrsV~sA--yF-SPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKAS-PFLSTLPHRRSVNSA--YF-SPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCC-cceecccccceeeee--EE-cCCCCceEeeccCCceEEeecc
Confidence 6655555599999999974443332 244455676666665 66 7888889999999999999984
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=147.45 Aligned_cols=225 Identities=14% Similarity=0.105 Sum_probs=159.6
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAF 81 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 81 (340)
||....++...++ |..++.+++|.++.+ +++|+.||.|+.+|+.++... .+.. |..+|.||.+
T Consensus 40 Ydv~~~~l~~~~~-----~~~plL~c~F~d~~~----------~~~G~~dg~vr~~Dln~~~~~-~igt-h~~~i~ci~~ 102 (323)
T KOG1036|consen 40 YDVPANSLKLKFK-----HGAPLLDCAFADEST----------IVTGGLDGQVRRYDLNTGNED-QIGT-HDEGIRCIEY 102 (323)
T ss_pred Eeccchhhhhhee-----cCCceeeeeccCCce----------EEEeccCceEEEEEecCCcce-eecc-CCCceEEEEe
Confidence 3444444444454 889999999998666 999999999999999998754 3333 9999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCcEEEEECCCCceeEEe--ecCCCCeE
Q 036605 82 AKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKF--SDDVGPLQ 159 (340)
Q Consensus 82 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~--~~~~~~v~ 159 (340)
++....+++|+.|++|++||.+.......+.. ...|.++....+--.+.+.++.+.+||+++....... ..-...++
T Consensus 103 ~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR 181 (323)
T KOG1036|consen 103 SYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTR 181 (323)
T ss_pred eccCCeEEEcccCccEEEEecccccccccccc-CceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEE
Confidence 99888999999999999999987555544543 3378888877543333356666999999987654322 23346789
Q ss_pred EEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeee-----cCCCeeeeeec-CCCCCCCCEEEEEeCCCcEEEE
Q 036605 160 YVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSM-----RHSPVAIDCKN-SPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 160 ~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~l~~~s~dg~i~vw 233 (340)
++++-|++.-+++++- ||.|.+=.++.....+.+.+.|.. .....+..+.. .| +|-...+++|+.||.|.+|
T Consensus 182 ~v~~~pn~eGy~~sSi-eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F-hp~~~tfaTgGsDG~V~~W 259 (323)
T KOG1036|consen 182 CVALVPNGEGYVVSSI-EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF-HPIHGTFATGGSDGIVNIW 259 (323)
T ss_pred EEEEecCCCceEEEee-cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe-ccccceEEecCCCceEEEc
Confidence 9999998777777777 999998887533111112222211 11111221211 33 7888899999999999999
Q ss_pred ECCCCCccCCCCC
Q 036605 234 DLKTVSQDEKTNP 246 (340)
Q Consensus 234 d~~~~~~~~~~~p 246 (340)
|+.+.+.+..+.+
T Consensus 260 d~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 260 DLFNRKRLKQLAK 272 (323)
T ss_pred cCcchhhhhhccC
Confidence 9999877764544
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-19 Score=135.22 Aligned_cols=217 Identities=14% Similarity=0.198 Sum_probs=158.6
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEE------ccCC--------eeEEEecCCCCCCeEEEEEecCC
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVD------VLTG--------EMKWKSTGRHPGGLAGLAFAKKG 85 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d------~~~~--------~~~~~~~~~h~~~v~~v~~~~~~ 85 (340)
.+..|.+++|+|.|. +.|+|++..+.+|-. +..+ ....+-...|.+.|+|.+|+|+|
T Consensus 31 dsqairav~fhp~g~---------lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGG---------LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred chhheeeEEecCCCc---------eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 457899999999999 999999999998853 2211 12222233489999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCe-----EEEEeecCCCCeeEEEEccC----CCEEEEe-cCc--EEEEECCCCceeEEeec
Q 036605 86 RSLHVVGTNGMASEMKSEMGE-----VIREFKASEKPISSSAFLCE----EKIFALA-SSE--VRILSLENGEEVLKFSD 153 (340)
Q Consensus 86 ~~l~s~~~dg~i~~wd~~~~~-----~~~~~~~~~~~i~~l~~~~~----~~~l~~~-~~~--i~i~d~~~~~~~~~~~~ 153 (340)
.++++|+.|..|++....... .-.+|..|.+.|..++|-.+ +.+|+++ .++ |++-|...|+.+..+.+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 999999999999987654322 12347778899999999754 4567663 333 88889999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecC----CCeeeeeecCCCCCCCCEEEEEeCCCc
Q 036605 154 DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRH----SPVAIDCKNSPNGEDGTVILAVAESGV 229 (340)
Q Consensus 154 ~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~s~dg~ 229 (340)
|.+.|.++- +=++-.+++++. |.+|++||++.+.... .+...+.. ...+..+ +. .|.|.+|++|-.|..
T Consensus 182 htghilaly-swn~~m~~sgsq-dktirfwdlrv~~~v~--~l~~~~~~~glessavaav--~v-dpsgrll~sg~~dss 254 (350)
T KOG0641|consen 182 HTGHILALY-SWNGAMFASGSQ-DKTIRFWDLRVNSCVN--TLDNDFHDGGLESSAVAAV--AV-DPSGRLLASGHADSS 254 (350)
T ss_pred CcccEEEEE-EecCcEEEccCC-CceEEEEeeeccceee--eccCcccCCCcccceeEEE--EE-CCCcceeeeccCCCc
Confidence 999887652 335667777655 9999999997544211 11111111 1122222 33 799999999999999
Q ss_pred EEEEECCCCCccCCCCCceEEEe
Q 036605 230 AYSWDLKTVSQDEKTNPAKITVK 252 (340)
Q Consensus 230 i~vwd~~~~~~~~~~~p~~i~~~ 252 (340)
..+||++.++.+..+-|+...+.
T Consensus 255 c~lydirg~r~iq~f~phsadir 277 (350)
T KOG0641|consen 255 CMLYDIRGGRMIQRFHPHSADIR 277 (350)
T ss_pred eEEEEeeCCceeeeeCCCcccee
Confidence 99999999999988888665554
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=161.97 Aligned_cols=193 Identities=15% Similarity=0.211 Sum_probs=158.4
Q ss_pred CCCCCeEE-EEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 19 EPVVSYSC-LACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 19 ~~~~~v~~-l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
+|.+-+.+ +++-+..+ -.+++|+.|++|.+|.+........+.+ |++.|.+++...++. +++||.|.++
T Consensus 55 ~~~g~i~~~i~y~e~~~--------~~l~~g~~D~~i~v~~~~~~~P~~~Lkg-H~snVC~ls~~~~~~-~iSgSWD~Ta 124 (745)
T KOG0301|consen 55 GPKGFIANSICYAESDK--------GRLVVGGMDTTIIVFKLSQAEPLYTLKG-HKSNVCSLSIGEDGT-LISGSWDSTA 124 (745)
T ss_pred cCcceeeccceeccccC--------cceEeecccceEEEEecCCCCchhhhhc-cccceeeeecCCcCc-eEecccccce
Confidence 45555555 66765322 0499999999999999999999999999 999999999877776 9999999999
Q ss_pred EEEeCCCCeEEEEeecCCCCeeEEEEccCCCEE-EEecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 98 SEMKSEMGEVIREFKASEKPISSSAFLCEEKIF-ALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
++|-. ++....+.+|...|++++.-|++.++ .++|..|++|.- ++.++.|.+|...|+.+++-+++ .|++++.
T Consensus 125 kvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsN- 198 (745)
T KOG0301|consen 125 KVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSN- 198 (745)
T ss_pred EEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecC-
Confidence 99975 55666799999999999999998554 225555999975 67789999999999999999886 5777677
Q ss_pred CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 177 EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
||.|+.|++ .++.+.... +|...++.+ .. ..++..++++++|+++++|+..
T Consensus 199 Dg~Ir~w~~---~ge~l~~~~---ghtn~vYsi--s~-~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 199 DGSIRLWDL---DGEVLLEMH---GHTNFVYSI--SM-ALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred CceEEEEec---cCceeeeee---ccceEEEEE--Ee-cCCCCeEEEecCCceEEEeecC
Confidence 999999997 555555555 788888777 33 4677889999999999999987
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=147.61 Aligned_cols=177 Identities=16% Similarity=0.214 Sum_probs=135.8
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||..+...+..+. .|.+.|+|+.|.++-. ...|++|+.||.|.+|+...-+.+..+.. |.+.|+.++
T Consensus 67 IYDm~k~~qlg~ll----~HagsitaL~F~~~~S-------~shLlS~sdDG~i~iw~~~~W~~~~slK~-H~~~Vt~ls 134 (362)
T KOG0294|consen 67 IYDMRKRKQLGILL----SHAGSITALKFYPPLS-------KSHLLSGSDDGHIIIWRVGSWELLKSLKA-HKGQVTDLS 134 (362)
T ss_pred EEeccchhhhccee----ccccceEEEEecCCcc-------hhheeeecCCCcEEEEEcCCeEEeeeecc-cccccceeE
Confidence 46666665555555 7899999999988762 11699999999999999999889999998 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC---------------------------------------CCCeeEE
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKAS---------------------------------------EKPISSS 121 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---------------------------------------~~~i~~l 121 (340)
.+|.+++.++.+.|+.++.||+-.|+.-..+.-. ...+.++
T Consensus 135 iHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~ 214 (362)
T KOG0294|consen 135 IHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCA 214 (362)
T ss_pred ecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceee
Confidence 9999999999999999999999887643222111 1112233
Q ss_pred EEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEE--CCCCCEEEEEEcCCCeEEEEEccCCCCC
Q 036605 122 AFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSA--SDGAKIIITAGYGEKHLQVWRCDISSKT 191 (340)
Q Consensus 122 ~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~~d~~i~iwd~~~~~~~ 191 (340)
.|.. +..|++|+.+ |.+||..+..++..|.+|...|.++.+ .|++.||+++++ ||.|+|||+++.+++
T Consensus 215 ~~l~-~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS-DG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 215 TFLD-GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS-DGFIKVWDIDMETKK 286 (362)
T ss_pred eecC-CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc-CceEEEEEccccccC
Confidence 3322 2333343333 888888888888889999999999985 677889999888 999999999765543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-21 Score=145.38 Aligned_cols=202 Identities=19% Similarity=0.239 Sum_probs=156.1
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe---eEEEecCCCCCCeEEEEEec--CCCEEEEEeC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE---MKWKSTGRHPGGLAGLAFAK--KGRSLHVVGT 93 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~ 93 (340)
.|...|......--|+ .||+++.|++|+|+.++... .+..+.+ |.++|..++|.. -|..|++|+.
T Consensus 9 ~H~D~IHda~lDyygk---------rlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~iLAScsY 78 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGK---------RLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGTILASCSY 78 (299)
T ss_pred hhhhhhhHhhhhhhcc---------eeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCcEeeEeec
Confidence 6777787777766687 89999999999999988654 5677888 999999999975 7899999999
Q ss_pred CCcEEEEeCCCCe--EEEEeecCCCCeeEEEEccCC--CEEEE--ecCcEEEEECCCC-c--eeEEeecCCCCeEEEEEC
Q 036605 94 NGMASEMKSEMGE--VIREFKASEKPISSSAFLCEE--KIFAL--ASSEVRILSLENG-E--EVLKFSDDVGPLQYVSAS 164 (340)
Q Consensus 94 dg~i~~wd~~~~~--~~~~~~~~~~~i~~l~~~~~~--~~l~~--~~~~i~i~d~~~~-~--~~~~~~~~~~~v~~~~~s 164 (340)
||.|.+|.-.+|+ ....+..|...|++++|.|.+ ..|++ .|++|.+.+.+.. . .......|.-.|++++|.
T Consensus 79 DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswa 158 (299)
T KOG1332|consen 79 DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWA 158 (299)
T ss_pred CceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeec
Confidence 9999999988774 233466789999999999975 45555 4556888777543 1 224457899999999998
Q ss_pred CC---C-----------CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCC---CCCCEEEEEeCC
Q 036605 165 DG---A-----------KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNG---EDGTVILAVAES 227 (340)
Q Consensus 165 ~~---~-----------~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~s~d 227 (340)
|. | +.|+++|. |+.|+||+.+...-.....+. .|..++.++ +|.+ -...++++++.|
T Consensus 159 pa~~~g~~~~~~~~~~~krlvSgGc-Dn~VkiW~~~~~~w~~e~~l~---~H~dwVRDV--AwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 159 PASAPGSLVDQGPAAKVKRLVSGGC-DNLVKIWKFDSDSWKLERTLE---GHKDWVRDV--AWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred CcCCCccccccCcccccceeeccCC-ccceeeeecCCcchhhhhhhh---hcchhhhhh--hhccccCCCceeeEEecCC
Confidence 76 4 56899888 999999998432212222344 788899888 5521 223579999999
Q ss_pred CcEEEEECC
Q 036605 228 GVAYSWDLK 236 (340)
Q Consensus 228 g~i~vwd~~ 236 (340)
|++.||...
T Consensus 233 g~viIwt~~ 241 (299)
T KOG1332|consen 233 GTVIIWTKD 241 (299)
T ss_pred CcEEEEEec
Confidence 999999876
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-21 Score=169.24 Aligned_cols=185 Identities=15% Similarity=0.177 Sum_probs=143.1
Q ss_pred EEEEEcCCCcEEEEEccC---CeeEEEecCCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCee
Q 036605 44 LLALGTSNGDILAVDVLT---GEMKWKSTGRHPGGLAGLAFAK-KGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPIS 119 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~---~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 119 (340)
+||+++.+|.|.+||+.. .+.+..|.. |...++++.|++ ...+|++|+.||.|++||++..+....+.+....|.
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~E-H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR 180 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNE-HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR 180 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhh-hccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence 899999999999999987 445556776 999999999998 456899999999999999999998888888888999
Q ss_pred EEEEccCC-CEEEEe--cCcEEEEECCCCc-eeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCC
Q 036605 120 SSAFLCEE-KIFALA--SSEVRILSLENGE-EVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKG 195 (340)
Q Consensus 120 ~l~~~~~~-~~l~~~--~~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~ 195 (340)
.+.|+|.. ..++++ +|.+.+||++... ...++.+|.++|.++.|+|++.+|++||. |+.|+|||+. ..+....
T Consensus 181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR-DK~vkiWd~t--~~~~~~~ 257 (839)
T KOG0269|consen 181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR-DKMVKIWDMT--DSRAKPK 257 (839)
T ss_pred ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC-CccEEEEecc--CCCccce
Confidence 99999964 455553 3449999998753 45788999999999999999999999886 9999999983 3222222
Q ss_pred ceeeecCCCeeeeeecCCCCCCC-CEEEEEe--CCCcEEEEECCC
Q 036605 196 PALSMRHSPVAIDCKNSPNGEDG-TVILAVA--ESGVAYSWDLKT 237 (340)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~s--~dg~i~vwd~~~ 237 (340)
... .....+..+ .| .|+. ..|++++ .|-.|+|||+..
T Consensus 258 ~tI--nTiapv~rV--kW-RP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 258 HTI--NTIAPVGRV--KW-RPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred eEE--eecceeeee--ee-ccCccchhhhhhccccceEEEEeecc
Confidence 221 222223333 44 4444 4455544 366799999976
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=162.95 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=140.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEec-CCCEEEEEe--CCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAK-KGRSLHVVG--TNG 95 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~--~dg 95 (340)
+|...|..+.|++|+. +||+|+.|+.+.|||....+.+..+.. |.+.|.+++|+| ....||+|+ .|+
T Consensus 299 ~H~qeVCgLkws~d~~---------~lASGgnDN~~~Iwd~~~~~p~~~~~~-H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 299 GHRQEVCGLKWSPDGN---------QLASGGNDNVVFIWDGLSPEPKFTFTE-HTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred cccceeeeeEECCCCC---------eeccCCCccceEeccCCCccccEEEec-cceeeeEeeeCCCccCceEEcCCCccc
Confidence 8999999999999999 999999999999999987788888888 999999999999 455788864 689
Q ss_pred cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC----cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEE
Q 036605 96 MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS----EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIII 171 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 171 (340)
.|++||..+|..+.... ....|+.|.|++..+.++++-+ +|.||+..+.+.+..+.+|...|..++++|||..++
T Consensus 369 ~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIV 447 (484)
T ss_pred EEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEE
Confidence 99999999999887765 3567999999999988877433 399999999999999999999999999999999999
Q ss_pred EEEcCCCeEEEEEc
Q 036605 172 TAGYGEKHLQVWRC 185 (340)
Q Consensus 172 s~~~~d~~i~iwd~ 185 (340)
+++. |.++++|++
T Consensus 448 t~a~-DETlrfw~~ 460 (484)
T KOG0305|consen 448 TGAA-DETLRFWNL 460 (484)
T ss_pred Eecc-cCcEEeccc
Confidence 9888 999999998
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=153.89 Aligned_cols=208 Identities=16% Similarity=0.159 Sum_probs=158.5
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecC-CCEEEEEeCCCc
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKK-GRSLHVVGTNGM 96 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~dg~ 96 (340)
.+|+..|..|+|...-+ ..||+|+.|.+|.+||+.+|++...+.. |.+.|.++.|+|. ...|++|+.|++
T Consensus 240 ~gHTdavl~Ls~n~~~~--------nVLaSgsaD~TV~lWD~~~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFR--------NVLASGSADKTVKLWDVDTGKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred ccchHHHHHHHhccccc--------eeEEecCCCceEEEEEcCCCCcceehhh-cCCceeEEEecCCCceEEEeccccce
Confidence 37888999999986653 2899999999999999999999999987 9999999999994 568999999999
Q ss_pred EEEEeCCCCe-EEEEeecCCCCeeEEEEccCCCEEEEe---cCcEEEEECCCC-ceeEEeecCCCCeEEEEECCCCCEEE
Q 036605 97 ASEMKSEMGE-VIREFKASEKPISSSAFLCEEKIFALA---SSEVRILSLENG-EEVLKFSDDVGPLQYVSASDGAKIII 171 (340)
Q Consensus 97 i~~wd~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~---~~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~ 171 (340)
|.+.|.+.-. .-..|+ -.+.|..++|.|.....+.+ +|.++-+|++.. +++.++..|..+|.++++++.-..++
T Consensus 311 V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 311 VALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred EEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcce
Confidence 9999998422 222233 24578899999977655443 466999999875 88899999999999999999887777
Q ss_pred EEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 172 TAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 172 s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
+.+..|+.|++|++............+.++. ..+. .+......+++.|+..+.++|||+.+...
T Consensus 390 ~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~r----l~c~-~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDVDSPKSVKEHSFKLGR----LHCF-ALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred eeccccceEEEEeecCCCCcccccccccccc----eeec-ccCCCcceEEEecCccceEEEeecccChh
Confidence 7677799999999964444433333332222 1111 11133445678888888999999987543
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-21 Score=161.40 Aligned_cols=209 Identities=17% Similarity=0.219 Sum_probs=165.0
Q ss_pred CccCCCCc--eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEE
Q 036605 1 IWSTNDGS--LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~ 78 (340)
|||+.... +..+++ .-.-.|.+|+.+||.+ +.+++..||.|.|||+.+...++.|++ |++.+.|
T Consensus 491 iWDLAapTprikaelt----ssapaCyALa~spDak---------vcFsccsdGnI~vwDLhnq~~VrqfqG-htDGasc 556 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELT----SSAPACYALAISPDAK---------VCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASC 556 (705)
T ss_pred eeeccCCCcchhhhcC----CcchhhhhhhcCCccc---------eeeeeccCCcEEEEEcccceeeecccC-CCCCcee
Confidence 68876554 334444 2335678899999999 999999999999999999999999999 9999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCC
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVG 156 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~ 156 (340)
|..++||..|.+|+-|.+|+.||+++++.+.... ..+.|.++..+|.+.+++++-.. +.+..... .....+..|.+
T Consensus 557 Idis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheS 634 (705)
T KOG0639|consen 557 IDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHES 634 (705)
T ss_pred EEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCC-ccceeeccccc
Confidence 9999999999999999999999999998765543 24578999999999999996555 55544332 23466777899
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
.|.++.|.+.|+++++.+. |+.+..|.. .-+..+... .....+..+ - .+.|..++++|+.|....||.+
T Consensus 635 cVLSlKFa~cGkwfvStGk-DnlLnawrt--PyGasiFqs----kE~SsVlsC--D-IS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 635 CVLSLKFAYCGKWFVSTGK-DNLLNAWRT--PYGASIFQS----KESSSVLSC--D-ISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEEEEecccCceeeecCc-hhhhhhccC--ccccceeec----cccCcceee--e-eccCceEEEecCCCcceEEEEE
Confidence 9999999999999999998 999999998 334322211 222223222 2 2778899999999998888875
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-20 Score=145.09 Aligned_cols=236 Identities=16% Similarity=0.179 Sum_probs=163.6
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-CCCCC---eEEEEEecCCCEEEEEeCCCcE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-RHPGG---LAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~h~~~---v~~v~~~~~~~~l~s~~~dg~i 97 (340)
..|...+|-+--+ .-...+.++|+.+.+.-|++||..+|+....+.. -|... ..+++|+|||.+|+. +....|
T Consensus 105 ~tvydy~wYs~M~--s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-Gykrci 181 (406)
T KOG2919|consen 105 ETVYDYCWYSRMK--SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCI 181 (406)
T ss_pred CEEEEEEeeeccc--cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceE
Confidence 4566666742111 0011234999999999999999999998777654 24433 468999999999997 556799
Q ss_pred EEEeC-CCCeEEEE---e----ecCCCCeeEEEEccCCC-EEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCC
Q 036605 98 SEMKS-EMGEVIRE---F----KASEKPISSSAFLCEEK-IFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDG 166 (340)
Q Consensus 98 ~~wd~-~~~~~~~~---~----~~~~~~i~~l~~~~~~~-~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 166 (340)
+++|+ +.|.-... + .+..+.+.+++|+|-.. .+++++.- +-||.-..+.++..+-+|.+.|+.++|.++
T Consensus 182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC
Confidence 99998 55542211 1 12356789999999765 66665443 777777778888888999999999999999
Q ss_pred CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeec--CCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC-CCccCC
Q 036605 167 AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMR--HSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT-VSQDEK 243 (340)
Q Consensus 167 ~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~-~~~~~~ 243 (340)
|+.|++++..|..|-.||+| ..+..+-.+.-..+ .....+++ .|.+.+|++|+.||.|++||++. +.....
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR-~~~~pv~~L~rhv~~TNQRI~FDl-----d~~~~~LasG~tdG~V~vwdlk~~gn~~sv 335 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIR-YSRDPVYALERHVGDTNQRILFDL-----DPKGEILASGDTDGSVRVWDLKDLGNEVSV 335 (406)
T ss_pred cCeecccccCCCeEEEEeeh-hccchhhhhhhhccCccceEEEec-----CCCCceeeccCCCccEEEEecCCCCCcccc
Confidence 99999999999999999997 33333222221111 22334455 89999999999999999999998 443432
Q ss_pred CCCceEEEeecccccccccccccccccceeeeee
Q 036605 244 TNPAKITVKLKKADADQQNSVNVKKSRTSIIAAR 277 (340)
Q Consensus 244 ~~p~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 277 (340)
+.+.+. ..+++...|. .||++..
T Consensus 336 ~~~~sd----------~vNgvslnP~-mpilats 358 (406)
T KOG2919|consen 336 TGNYSD----------TVNGVSLNPI-MPILATS 358 (406)
T ss_pred cccccc----------cccceecCcc-cceeeec
Confidence 323222 2233445555 5776665
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=153.58 Aligned_cols=179 Identities=14% Similarity=0.202 Sum_probs=149.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc---------CCeeEEEecCC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL---------TGEMKWKSTGR 71 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~---------~~~~~~~~~~~ 71 (340)
+|.+.+|.++..+. .|-..|+|+.|+-|+. +|++|+.||.|.+|++. +.+..+.+..
T Consensus 107 lWelssG~LL~v~~----aHYQ~ITcL~fs~dgs---------~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~- 172 (476)
T KOG0646|consen 107 LWELSSGILLNVLS----AHYQSITCLKFSDDGS---------HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD- 172 (476)
T ss_pred EEEeccccHHHHHH----hhccceeEEEEeCCCc---------EEEecCCCccEEEEEEEeecccccCCCccceeeecc-
Confidence 69999999998886 8999999999999999 99999999999999864 2346777888
Q ss_pred CCCCeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCC---
Q 036605 72 HPGGLAGLAFAKK--GRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLEN--- 144 (340)
Q Consensus 72 h~~~v~~v~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~--- 144 (340)
|.-+|+++...+. ..+|+++|.|.++++||+..|..+.++.. ...+.+++++|.++.+++|..+ |.+.++..
T Consensus 173 HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~ 251 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSG 251 (476)
T ss_pred CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCc
Confidence 9999999988764 35899999999999999999998888754 5678999999999999887666 55555432
Q ss_pred -------------CceeEEeecCCC--CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCce
Q 036605 145 -------------GEEVLKFSDDVG--PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA 197 (340)
Q Consensus 145 -------------~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~ 197 (340)
+..+..+.+|.+ .|++++++-||..|++|+. ||.++|||+ .+++.++.+.
T Consensus 252 ~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~-dg~VcvWdi--~S~Q~iRtl~ 316 (476)
T KOG0646|consen 252 QSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE-DGKVCVWDI--YSKQCIRTLQ 316 (476)
T ss_pred ccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC-CCCEEEEec--chHHHHHHHh
Confidence 223466788888 9999999999999999777 999999999 5655554443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-20 Score=160.65 Aligned_cols=203 Identities=21% Similarity=0.237 Sum_probs=164.7
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-eEEEecCCCCCCeEEEEEecCC--CEEEEEeCCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-MKWKSTGRHPGGLAGLAFAKKG--RSLHVVGTNG 95 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~h~~~v~~v~~~~~~--~~l~s~~~dg 95 (340)
.|+.+|.||.||...-.+ .+||+++.|..|+|||+...- ++.++.+ |...|+++.|...| ..+++|+.|.
T Consensus 499 AHesEilcLeyS~p~~~~------kLLASasrdRlIHV~Dv~rny~l~qtld~-HSssITsvKFa~~gln~~MiscGADk 571 (1080)
T KOG1408|consen 499 AHESEILCLEYSFPVLTN------KLLASASRDRLIHVYDVKRNYDLVQTLDG-HSSSITSVKFACNGLNRKMISCGADK 571 (1080)
T ss_pred cccceeEEEeecCchhhh------HhhhhccCCceEEEEecccccchhhhhcc-cccceeEEEEeecCCceEEEeccCch
Confidence 799999999998543211 299999999999999987543 5667777 99999999998877 6899999998
Q ss_pred cEEEEeCCCCeEEEEee-----cCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEee---cCCCCeEEEEECC
Q 036605 96 MASEMKSEMGEVIREFK-----ASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFS---DDVGPLQYVSASD 165 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~-----~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~---~~~~~v~~~~~s~ 165 (340)
.|.+-..+.......|. ..+..++.+++.|..++++++.. .|+|||+++++..+.|+ +|.+....+...|
T Consensus 572 simFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP 651 (1080)
T KOG1408|consen 572 SIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP 651 (1080)
T ss_pred hhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC
Confidence 77543322111111222 23456899999999999988544 49999999999999985 4667888999999
Q ss_pred CCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 166 GAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 166 ~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.|.|++++.. |.++.++|+ .+++...... +|...+..+ .| .+|.++|++++.||.|.||.+..
T Consensus 652 SgiY~atScs-dktl~~~Df--~sgEcvA~m~---GHsE~VTG~--kF-~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 652 SGIYLATSCS-DKTLCFVDF--VSGECVAQMT---GHSEAVTGV--KF-LNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CccEEEEeec-CCceEEEEe--ccchhhhhhc---Ccchheeee--ee-cccchhheeecCCceEEEEECch
Confidence 9999999888 999999999 7888888777 898888887 77 78999999999999999999875
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-20 Score=158.13 Aligned_cols=215 Identities=13% Similarity=0.142 Sum_probs=169.6
Q ss_pred CccCCCC--ceeeeeeCCCCCCCCCeEEEEe-eccccccccccCceEEEEEcCCCcEEEEEccCCe--eEE--------E
Q 036605 1 IWSTNDG--SLLAEWKQPDGEPVVSYSCLAC-GFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKW--------K 67 (340)
Q Consensus 1 vwd~~~g--~~~~~~~~~~~~~~~~v~~l~~-sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~--------~ 67 (340)
+|+...+ -+...+. .|..-|.|++. .++.. ++|+|+-|+.|.+||+.++. .+. .
T Consensus 99 ~W~~~~~~~~c~stir----~H~DYVkcla~~ak~~~---------lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIR----THKDYVKCLAYIAKNNE---------LVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred EeecccCcchhHhhhh----cccchheeeeecccCce---------eEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 4777665 3444554 89999999999 77777 89999999999999999872 222 2
Q ss_pred ecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCC
Q 036605 68 STGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENG 145 (340)
Q Consensus 68 ~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~ 145 (340)
+..++..+|++++.++.|..+++|+..+.+++||.++++.+..+.+|...|.++.+++||..+++++.+ |++||+...
T Consensus 166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred CCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 231488899999999999999999999999999999999999999999999999999999999886555 999999999
Q ss_pred ceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEe
Q 036605 146 EEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVA 225 (340)
Q Consensus 146 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s 225 (340)
+++.++..|...|+++..+|+-.++++|+. |+.|..=|++... .....+...++...... +....-+-+++
T Consensus 246 rCl~T~~vH~e~VWaL~~~~sf~~vYsG~r-d~~i~~Tdl~n~~---~~tlick~daPv~~l~~-----~~~~~~~WvtT 316 (735)
T KOG0308|consen 246 RCLATYIVHKEGVWALQSSPSFTHVYSGGR-DGNIYRTDLRNPA---KSTLICKEDAPVLKLHL-----HEHDNSVWVTT 316 (735)
T ss_pred ceeeeEEeccCceEEEeeCCCcceEEecCC-CCcEEecccCCch---hheEeecCCCchhhhhh-----ccccCCceeee
Confidence 999999999999999999999999999888 9999998985321 12222222332222222 22222346778
Q ss_pred CCCcEEEEECCC
Q 036605 226 ESGVAYSWDLKT 237 (340)
Q Consensus 226 ~dg~i~vwd~~~ 237 (340)
.|+.|.-|....
T Consensus 317 tds~I~rW~~~~ 328 (735)
T KOG0308|consen 317 TDSSIKRWKLEP 328 (735)
T ss_pred ccccceecCCcc
Confidence 899999997664
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-18 Score=144.55 Aligned_cols=221 Identities=15% Similarity=0.120 Sum_probs=155.5
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEE-EEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLL-ALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
+||+.+++....+. .+ ..+.+++|+|+++ .+ ++++.++.|++||..+++....+.. +. .+..+
T Consensus 15 ~~d~~t~~~~~~~~----~~-~~~~~l~~~~dg~---------~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~-~~~~~ 78 (300)
T TIGR03866 15 VIDTATLEVTRTFP----VG-QRPRGITLSKDGK---------LLYVCASDSDTIQVIDLATGEVIGTLPS-GP-DPELF 78 (300)
T ss_pred EEECCCCceEEEEE----CC-CCCCceEECCCCC---------EEEEEECCCCeEEEEECCCCcEEEeccC-CC-CccEE
Confidence 58998898887776 33 3467899999997 55 6778899999999999987776664 43 35688
Q ss_pred EEecCCCEEEEE-eCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc---EEEEECCCCceeEEeecCC
Q 036605 80 AFAKKGRSLHVV-GTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE---VRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 80 ~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~---i~i~d~~~~~~~~~~~~~~ 155 (340)
+|+|+++.++++ +.++.|.+||+.+++.+..+..+ ..+.+++|+|++.+++++... +.+||..+++....+.. .
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 999999987665 46899999999998877766532 346889999999999875543 77889988876554432 2
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeec--CCCeeeeeecCCCCCCCCEEEE-EeCCCcEEE
Q 036605 156 GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMR--HSPVAIDCKNSPNGEDGTVILA-VAESGVAYS 232 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~-~s~dg~i~v 232 (340)
..+..+.|+|++.++++++..++.|.+||+ .+++....+.+... +..........+ ++++.++++ .+.++.+.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~-s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDV--ATRKVIKKITFEIPGVHPEAVQPVGIKL-TKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEc--CcceeeeeeeecccccccccCCccceEE-CCCCCEEEEEcCCCCeEEE
Confidence 345789999999988766655899999998 44433332221110 000110011133 788887554 455678999
Q ss_pred EECCCCCccC
Q 036605 233 WDLKTVSQDE 242 (340)
Q Consensus 233 wd~~~~~~~~ 242 (340)
||+.+++...
T Consensus 234 ~d~~~~~~~~ 243 (300)
T TIGR03866 234 VDAKTYEVLD 243 (300)
T ss_pred EECCCCcEEE
Confidence 9998765443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-18 Score=135.40 Aligned_cols=196 Identities=14% Similarity=0.137 Sum_probs=146.3
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASE 99 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~ 99 (340)
....|+.+.|+|.+. .|+++++||++++||+........+. |.+++.+++|.+ ...+++|+.||.|+.
T Consensus 12 P~d~IS~v~f~~~~~---------~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d-~~~~~~G~~dg~vr~ 79 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSS---------DLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD-ESTIVTGGLDGQVRR 79 (323)
T ss_pred ChhceeeEEEcCcCC---------cEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC-CceEEEeccCceEEE
Confidence 468899999998887 78888999999999999887666666 899999999986 668999999999999
Q ss_pred EeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCC
Q 036605 100 MKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGE 177 (340)
Q Consensus 100 wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d 177 (340)
+|+.++... .+..|..++.||..++....+++++ +.|++||.+.......+.. ...|.++... +..|+.++. +
T Consensus 80 ~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~-~ 154 (323)
T KOG1036|consen 80 YDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTS-D 154 (323)
T ss_pred EEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeec-C
Confidence 999988754 4556899999999998777777754 4599999997555544433 3467777664 557888777 9
Q ss_pred CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 178 KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 178 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
..+.+||+|... .......-.+.. ...+.+++ |++.-.++++-||+|.+=.+...
T Consensus 155 r~v~iyDLRn~~-~~~q~reS~lky---qtR~v~~~--pn~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 155 RKVLIYDLRNLD-EPFQRRESSLKY---QTRCVALV--PNGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred ceEEEEEccccc-chhhhcccccee---EEEEEEEe--cCCCceEEEeecceEEEEccCCc
Confidence 999999996322 211111111111 22222333 57777899999999998777664
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-19 Score=159.07 Aligned_cols=198 Identities=13% Similarity=0.148 Sum_probs=157.6
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASE 99 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~ 99 (340)
+...|.+++.. +. +|++|+.+++|.+|....++....+.. ..-++++++|+.+|++++.||.|-.|++
T Consensus 55 ~g~~v~~ia~~--s~---------~f~~~s~~~tv~~y~fps~~~~~iL~R-ftlp~r~~~v~g~g~~iaagsdD~~vK~ 122 (933)
T KOG1274|consen 55 SGELVSSIACY--SN---------HFLTGSEQNTVLRYKFPSGEEDTILAR-FTLPIRDLAVSGSGKMIAAGSDDTAVKL 122 (933)
T ss_pred cCceeEEEeec--cc---------ceEEeeccceEEEeeCCCCCccceeee-eeccceEEEEecCCcEEEeecCceeEEE
Confidence 44556665553 44 699999999999999988875444444 5568999999999999999999999999
Q ss_pred EeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE--ecCcEEEEECCCCceeEEeecC--------CCCeEEEEECCCCCE
Q 036605 100 MKSEMGEVIREFKASEKPISSSAFLCEEKIFAL--ASSEVRILSLENGEEVLKFSDD--------VGPLQYVSASDGAKI 169 (340)
Q Consensus 100 wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~ 169 (340)
.+..+......+.+|..+|.++.++|.+.+||+ ++|.|++||+.++.....+.+- ...+..++|+|+|..
T Consensus 123 ~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~ 202 (933)
T KOG1274|consen 123 LNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT 202 (933)
T ss_pred EeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe
Confidence 999999999999999999999999999999987 6677999999998766554321 345778999999878
Q ss_pred EEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCe-eeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 170 IITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPV-AIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 170 l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
++..+. |+.|.+|+. ...+....+. ..+... +..+ .| +|+|.|||+++.||.|.|||+.+
T Consensus 203 la~~~~-d~~Vkvy~r--~~we~~f~Lr--~~~~ss~~~~~--~w-sPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 203 LAVPPV-DNTVKVYSR--KGWELQFKLR--DKLSSSKFSDL--QW-SPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEeecc-CCeEEEEcc--CCceeheeec--ccccccceEEE--EE-cCCCcEEeeeccCCcEEEEeccc
Confidence 888788 999999997 4443333332 222222 3333 66 89999999999999999999996
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=145.17 Aligned_cols=203 Identities=13% Similarity=0.143 Sum_probs=156.5
Q ss_pred CCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCe-------eEEEecCCCCCCeEEEEEecC-CCEE
Q 036605 18 GEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGE-------MKWKSTGRHPGGLAGLAFAKK-GRSL 88 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-------~~~~~~~~h~~~v~~v~~~~~-~~~l 88 (340)
.+|..+|..++|+|.+ . .+|+|+.|.+|.||++..+. .+..+.+ |...|.-++|+|. .+.|
T Consensus 78 ~GHt~~vLDi~w~PfnD~---------vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDC---------VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred cCccccccccccCccCCc---------eeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhH
Confidence 6899999999999987 5 79999999999999987653 3456677 9999999999995 4689
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCC-eEEEEECC
Q 036605 89 HVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGP-LQYVSASD 165 (340)
Q Consensus 89 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~-v~~~~~s~ 165 (340)
++++.|..|.+|++.+|+.+..+. |..-|+++.|+.+|..+++...+ |+|||.++++.+..-.+|.+. -..+.|-.
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence 999999999999999999988887 99999999999999999986665 999999999988777777743 45577778
Q ss_pred CCCEEEEEEcC---CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCC-EEEEEeCCCcEEEEECCCC
Q 036605 166 GAKIIITAGYG---EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGT-VILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 166 ~~~~l~s~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~s~dg~i~vwd~~~~ 238 (340)
++. ++++|.. ++++.+||-. .-+.. .....+.....++- ..+ .+|.. ..++|-.||.|+.|.+.+.
T Consensus 227 ~g~-i~tTGfsr~seRq~aLwdp~--nl~eP-~~~~elDtSnGvl~--PFy-D~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 227 SGK-IFTTGFSRMSERQIALWDPN--NLEEP-IALQELDTSNGVLL--PFY-DPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred cCc-eeeeccccccccceeccCcc--cccCc-ceeEEeccCCceEE--eee-cCCCCEEEEEecCCcceEEEEecCC
Confidence 887 6665543 7889999962 22111 11112222222221 244 45544 4577888999999988763
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-18 Score=144.24 Aligned_cols=216 Identities=12% Similarity=0.087 Sum_probs=153.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEE-EcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLAL-GTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~-g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
+||+.+++....+. .+ ..+..++|+|+++ .+++ +..++.|.+||+.+++.+..+.. ...+.++
T Consensus 57 ~~d~~~~~~~~~~~----~~-~~~~~~~~~~~g~---------~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~ 120 (300)
T TIGR03866 57 VIDLATGEVIGTLP----SG-PDPELFALHPNGK---------ILYIANEDDNLVTVIDIETRKVLAEIPV--GVEPEGM 120 (300)
T ss_pred EEECCCCcEEEecc----CC-CCccEEEECCCCC---------EEEEEcCCCCeEEEEECCCCeEEeEeeC--CCCcceE
Confidence 57888888776655 22 2356789999997 5654 55689999999998887776653 3357889
Q ss_pred EEecCCCEEEEEeCCC-cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEe---cCcEEEEECCCCceeEEeecCC
Q 036605 80 AFAKKGRSLHVVGTNG-MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALA---SSEVRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 80 ~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~---~~~i~i~d~~~~~~~~~~~~~~ 155 (340)
+|+|++..+++++.++ .+.+||..+++....... ...+.+++|+|++++++++ ++.|++||+.+++.+..+..+.
T Consensus 121 ~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 121 AVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred EECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence 9999999999988775 567789988877655433 2345789999999988553 4459999999987776654221
Q ss_pred -------CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEE-eCC
Q 036605 156 -------GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAV-AES 227 (340)
Q Consensus 156 -------~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-s~d 227 (340)
.....++|+|++++++.+...++.+.+||+ .+++..... ...+... .+ .| +|++.+|+++ ..+
T Consensus 200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~--~~~~~~~~~--~~~~~~~--~~--~~-~~~g~~l~~~~~~~ 270 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA--KTYEVLDYL--LVGQRVW--QL--AF-TPDEKYLLTTNGVS 270 (300)
T ss_pred cccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC--CCCcEEEEE--EeCCCcc--eE--EE-CCCCCEEEEEcCCC
Confidence 123468899999987665444778999998 343332211 1233222 23 34 8999999876 468
Q ss_pred CcEEEEECCCCCccC
Q 036605 228 GVAYSWDLKTVSQDE 242 (340)
Q Consensus 228 g~i~vwd~~~~~~~~ 242 (340)
|.|.+||+.+++.+.
T Consensus 271 ~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 271 NDVSVIDVAALKVIK 285 (300)
T ss_pred CeEEEEECCCCcEEE
Confidence 999999999876554
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-19 Score=147.07 Aligned_cols=219 Identities=14% Similarity=0.104 Sum_probs=168.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+||++++++...-.+. +.....+.....||++. +|+..+..|.|++....+++.+..+. -.+.|..++
T Consensus 284 syDle~ak~~k~~~~~-g~e~~~~e~FeVShd~~---------fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~ 351 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPY-GVEEKSMERFEVSHDSN---------FIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFT 351 (514)
T ss_pred EeeccccccccccCCC-CcccchhheeEecCCCC---------eEEEcccCceEEeehhhhhhhhheee--eccEEeeEE
Confidence 4888888766433322 33345677788899999 99999999999999999999888887 578999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC-CeeEEEEccCCCEEEEecCc--EEEEECCC------CceeEEe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEK-PISSSAFLCEEKIFALASSE--VRILSLEN------GEEVLKF 151 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~i~~l~~~~~~~~l~~~~~~--i~i~d~~~------~~~~~~~ 151 (340)
|+.|++.|+.++.+|.|.+||++....+++|....+ .-++++.++++.+||+|+.. |.|||..+ .+++..+
T Consensus 352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~ 431 (514)
T KOG2055|consen 352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV 431 (514)
T ss_pred EecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh
Confidence 999999999999999999999999988888874322 33678888999999998877 99999653 4566667
Q ss_pred ecCCCCeEEEEECCCCCEEEEEEcC-CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcE
Q 036605 152 SDDVGPLQYVSASDGAKIIITAGYG-EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVA 230 (340)
Q Consensus 152 ~~~~~~v~~~~~s~~~~~l~s~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i 230 (340)
..-...|+++.|++|+..|+.++.. +..+++-.+ ++......+.........+..+ .| +|.+.+++.|..+|++
T Consensus 432 dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv--PS~TVFsNfP~~n~~vg~vtc~--aF-SP~sG~lAvGNe~grv 506 (514)
T KOG2055|consen 432 DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV--PSCTVFSNFPTSNTKVGHVTCM--AF-SPNSGYLAVGNEAGRV 506 (514)
T ss_pred hhhheeeeeeeeCcchhhhhhhhhccccceEEEec--cceeeeccCCCCCCcccceEEE--Ee-cCCCceEEeecCCCce
Confidence 6677899999999999888765543 677888877 4433322222111111223333 45 8999999999999999
Q ss_pred EEEECC
Q 036605 231 YSWDLK 236 (340)
Q Consensus 231 ~vwd~~ 236 (340)
.+|.+.
T Consensus 507 ~l~kL~ 512 (514)
T KOG2055|consen 507 HLFKLH 512 (514)
T ss_pred eeEeec
Confidence 999875
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=141.34 Aligned_cols=204 Identities=16% Similarity=0.159 Sum_probs=151.3
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC----------------CeeEEEecCCCCCCeEEEEEec
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT----------------GEMKWKSTGRHPGGLAGLAFAK 83 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~----------------~~~~~~~~~~h~~~v~~v~~~~ 83 (340)
|.+.+..+.-++-+. ..+.|+-+..|.|+||++.. .+.+.++.+ |.+.=++++|||
T Consensus 150 h~g~~NRvr~~~~~~-------~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g-hk~EGy~LdWSp 221 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGN-------EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG-HKGEGYGLDWSP 221 (440)
T ss_pred cccccceeeecccCC-------cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc-cCccceeeeccc
Confidence 444555555554431 23777788899999999642 235667777 998999999999
Q ss_pred C-CCEEEEEeCCCcEEEEeCCCCeEEE---EeecCCCCeeEEEEccCCCEE-EE--ecCcEEEEECCCCcee--EEeecC
Q 036605 84 K-GRSLHVVGTNGMASEMKSEMGEVIR---EFKASEKPISSSAFLCEEKIF-AL--ASSEVRILSLENGEEV--LKFSDD 154 (340)
Q Consensus 84 ~-~~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~~i~~l~~~~~~~~l-~~--~~~~i~i~d~~~~~~~--~~~~~~ 154 (340)
- ...|++|..-+.|++|...+|.-.. .|.+|...|..|+|||...-+ ++ +++.|+|||++.+... ...+.|
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh 301 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAH 301 (440)
T ss_pred ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeecc
Confidence 3 2358888888999999998876432 366799999999999987654 44 5666999999988322 334889
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCC-ccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 155 VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKT-VNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 155 ~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
.+.|+-+.|+..-.+|++++. ||+++|||+|.-+.. ....+. .|...+..+ -|...+...+++++.|.+|.+|
T Consensus 302 ~sDVNVISWnr~~~lLasG~D-dGt~~iwDLR~~~~~~pVA~fk---~Hk~pItsi--eW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 302 NSDVNVISWNRREPLLASGGD-DGTLSIWDLRQFKSGQPVATFK---YHKAPITSI--EWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred CCceeeEEccCCcceeeecCC-CceEEEEEhhhccCCCcceeEE---eccCCeeEE--EeccccCceEEeccCCCcEEEE
Confidence 999999999998888888777 999999999744322 222333 566666666 6644566788899999999999
Q ss_pred ECCC
Q 036605 234 DLKT 237 (340)
Q Consensus 234 d~~~ 237 (340)
|+..
T Consensus 376 Dlsv 379 (440)
T KOG0302|consen 376 DLSV 379 (440)
T ss_pred Eeec
Confidence 9876
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-18 Score=150.75 Aligned_cols=212 Identities=13% Similarity=0.088 Sum_probs=169.1
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC-eeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG-EMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
.|....+.++|.|+|. +|++++.||.|++|+.... +....+.. +...|.+++.. +.+|++|+.++.|
T Consensus 11 aht~G~t~i~~d~~ge---------fi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~--s~~f~~~s~~~tv 78 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE---------FICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACY--SNHFLTGSEQNTV 78 (933)
T ss_pred hccCceEEEEEcCCCC---------EEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeec--ccceEEeeccceE
Confidence 5777899999999999 9999999999999997655 33334443 66778887754 6699999999999
Q ss_pred EEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 98 SEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
.+|.+..++.-..+....-++.+++|+.+|.+++.|+.+ |++.++.+......+.+|.++|.++.|+|.+.+|+++..
T Consensus 79 ~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~ 158 (933)
T KOG1274|consen 79 LRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC 158 (933)
T ss_pred EEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec
Confidence 999999887655555566789999999999999998877 999999998888999999999999999999999999877
Q ss_pred CCCeEEEEEccCCCCCccCCceeee---cCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 176 GEKHLQVWRCDISSKTVNKGPALSM---RHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
||.|+||++ ..+.....+.... +...........| +|++..+++.+.|+.|.+|+....+....+.+
T Consensus 159 -dG~v~iw~~--~~~~~~~tl~~v~k~n~~~~s~i~~~~aW-~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 159 -DGKVQIWDL--QDGILSKTLTGVDKDNEFILSRICTRLAW-HPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred -CceEEEEEc--ccchhhhhcccCCccccccccceeeeeee-cCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence 999999999 4544333222110 1111122233477 89988899999999999999999877766665
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=143.08 Aligned_cols=206 Identities=14% Similarity=0.141 Sum_probs=157.9
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCCCeEEEEEecCCC-EEEEEeCCCcEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPGGLAGLAFAKKGR-SLHVVGTNGMAS 98 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i~ 98 (340)
+.|+|+.|+|... +|++++.||+++||.+.... .++.+.- ...+|.+.+|.|+|. .+++++....++
T Consensus 214 ~~I~sv~FHp~~p---------lllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~rrky~y 283 (514)
T KOG2055|consen 214 GGITSVQFHPTAP---------LLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGRRKYLY 283 (514)
T ss_pred CCceEEEecCCCc---------eEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecccceEEE
Confidence 7899999999988 99999999999999886432 3334333 456899999999999 899999999999
Q ss_pred EEeCCCCeEEEE--eecC-CCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEE
Q 036605 99 EMKSEMGEVIRE--FKAS-EKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 99 ~wd~~~~~~~~~--~~~~-~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 173 (340)
.||+.+++.... ..++ ...+....++|++++++.++.. |.+....+++.+..++ ..+.|..+.|+.+++.|+++
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~ 362 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLAS 362 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEE
Confidence 999998875432 2222 3357788999999999997776 8888888998887776 36789999999999999998
Q ss_pred EcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 174 GYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
+. +|.|.+||++.. .....+. ....+.....+. +.++.+|++|+..|.|.|||..+...-...+|
T Consensus 363 ~~-~GeV~v~nl~~~--~~~~rf~----D~G~v~gts~~~-S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 363 GG-TGEVYVWNLRQN--SCLHRFV----DDGSVHGTSLCI-SLNGSYLATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred cC-CceEEEEecCCc--ceEEEEe----ecCccceeeeee-cCCCceEEeccCcceEEEeccchhhccCCCCc
Confidence 87 999999999532 2222222 222222222233 78999999999999999999887554444555
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-18 Score=145.91 Aligned_cols=206 Identities=16% Similarity=0.140 Sum_probs=158.2
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE-EEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK-WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASE 99 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~ 99 (340)
..+|+||||+...+ .||++-.+|.|-||++..+-.. ..+.+.....|-+++|+ ++..|++.+.+|.|.-
T Consensus 25 Ps~I~slA~s~kS~---------~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~E 94 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSN---------QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITE 94 (691)
T ss_pred ccceEEEEEeccCC---------ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEE
Confidence 35899999998887 7999999999999999886533 34455456789999999 5778999999999999
Q ss_pred EeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCcee--EEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 100 MKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEV--LKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 100 wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
||+.+++.+..+....+.|++++.+|.+..++.+..+ ++.++...++.. ..|.-..+.+.++.|+|++..++.|+.
T Consensus 95 wDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 95 WDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred EecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 9999999999999989999999999999999886333 666666666544 233444588999999999999999888
Q ss_pred CCCeEEEEEccCCCCCccCCcee-----eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCC
Q 036605 176 GEKHLQVWRCDISSKTVNKGPAL-----SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEK 243 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~ 243 (340)
||.|++||. ..+........ .-..+..++.+ .+ -....+++|.+.|.|.+||...+.++..
T Consensus 175 -Dg~Iriwd~--~~~~t~~~~~~~~d~l~k~~~~iVWSv--~~--Lrd~tI~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 175 -DGVIRIWDV--KSGQTLHIITMQLDRLSKREPTIVWSV--LF--LRDSTIASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred -CceEEEEEc--CCCceEEEeeecccccccCCceEEEEE--EE--eecCcEEEecCCceEEEEcccCcchhhh
Confidence 999999998 44433331111 11122333443 23 2335699999999999999998766653
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=137.28 Aligned_cols=218 Identities=15% Similarity=0.178 Sum_probs=158.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCe----
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGL---- 76 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v---- 76 (340)
|||..+-..-..+. .|..+|+|++||++|+ .|++++.|..|.+||+..|.+++++. ..++|
T Consensus 49 I~D~~T~~iar~ls----aH~~pi~sl~WS~dgr---------~LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q 113 (405)
T KOG1273|consen 49 IYDFDTFRIARMLS----AHVRPITSLCWSRDGR---------KLLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQ 113 (405)
T ss_pred EEEccccchhhhhh----ccccceeEEEecCCCC---------EeeeecCCceeEEEeccCCCceeEEE--ccCccceee
Confidence 46666555445554 8999999999999999 89999999999999999888766552 11111
Q ss_pred -------------------------------------------EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeec
Q 036605 77 -------------------------------------------AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKA 113 (340)
Q Consensus 77 -------------------------------------------~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 113 (340)
.+..|.+.|+++++|...|.+.++|..+.+.+..++.
T Consensus 114 ~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri 193 (405)
T KOG1273|consen 114 WHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI 193 (405)
T ss_pred eccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee
Confidence 1123566688999999999999999999998888776
Q ss_pred CC-CCeeEEEEccCCCEEEE--ecCcEEEEECCCC-------ce--eEEeec--CCCCeEEEEECCCCCEEEEEEcCCCe
Q 036605 114 SE-KPISSSAFLCEEKIFAL--ASSEVRILSLENG-------EE--VLKFSD--DVGPLQYVSASDGAKIIITAGYGEKH 179 (340)
Q Consensus 114 ~~-~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~~-------~~--~~~~~~--~~~~v~~~~~s~~~~~l~s~~~~d~~ 179 (340)
.. ..|.++.++..|+.++. .++.|+.|+++.- +. ..++.. ....-.+++|+.+|.|+++++.....
T Consensus 194 ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHa 273 (405)
T KOG1273|consen 194 TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHA 273 (405)
T ss_pred chheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecccccee
Confidence 65 67889999999999987 5555999998621 11 122211 12344678999999999998877888
Q ss_pred EEEEEccCCCCCccCCceeeecCC-CeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 180 LQVWRCDISSKTVNKGPALSMRHS-PVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 180 i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
++||.- ..+...+.+. +.. ....++ .| +|-...+++. ..|.+++|.......-.
T Consensus 274 LYIWE~--~~GsLVKILh---G~kgE~l~DV--~w-hp~rp~i~si-~sg~v~iw~~~~~enws 328 (405)
T KOG1273|consen 274 LYIWEK--SIGSLVKILH---GTKGEELLDV--NW-HPVRPIIASI-ASGVVYIWAVVQVENWS 328 (405)
T ss_pred EEEEec--CCcceeeeec---CCchhheeec--cc-ccceeeeeec-cCCceEEEEeecccchh
Confidence 999996 4565555544 333 344555 55 6666667766 77889999876544333
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-18 Score=134.31 Aligned_cols=200 Identities=14% Similarity=0.176 Sum_probs=133.4
Q ss_pred CccCCC-CceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTND-GSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~-g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
+|+++. |+....-. ..|..+|.|++|+.||. .+++|+.|+.+++||+.+++ ...+.. |.++|.++
T Consensus 54 ~wevq~~g~~~~ka~---~~~~~PvL~v~Wsddgs---------kVf~g~~Dk~~k~wDL~S~Q-~~~v~~-Hd~pvkt~ 119 (347)
T KOG0647|consen 54 IWEVQNSGQLVPKAQ---QSHDGPVLDVCWSDDGS---------KVFSGGCDKQAKLWDLASGQ-VSQVAA-HDAPVKTC 119 (347)
T ss_pred EEEEecCCcccchhh---hccCCCeEEEEEccCCc---------eEEeeccCCceEEEEccCCC-eeeeee-cccceeEE
Confidence 466654 45443222 25889999999999997 79999999999999999995 445665 99999999
Q ss_pred EEecCCC--EEEEEeCCCcEEEEeCCCCeEEEEeecC-----------------------------------------CC
Q 036605 80 AFAKKGR--SLHVVGTNGMASEMKSEMGEVIREFKAS-----------------------------------------EK 116 (340)
Q Consensus 80 ~~~~~~~--~l~s~~~dg~i~~wd~~~~~~~~~~~~~-----------------------------------------~~ 116 (340)
.|-+... .|++|+.|.+|+.||.+...++..+... +.
T Consensus 120 ~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~ 199 (347)
T KOG0647|consen 120 HWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKW 199 (347)
T ss_pred EEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccc
Confidence 9987665 8999999999999999987665544321 11
Q ss_pred CeeEEEEccCCCEEEEe--cCcEEEEECCCC--ceeEEeecCC---------CCeEEEEECCCCCEEEEEEcCCCeEEEE
Q 036605 117 PISSSAFLCEEKIFALA--SSEVRILSLENG--EEVLKFSDDV---------GPLQYVSASDGAKIIITAGYGEKHLQVW 183 (340)
Q Consensus 117 ~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~--~~~~~~~~~~---------~~v~~~~~s~~~~~l~s~~~~d~~i~iw 183 (340)
.+.||+..++....+.+ .+.+.+..+..+ +.-..|+-|. ..|.+++|+|....|+++|+ ||++.+|
T Consensus 200 Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs-DGtf~FW 278 (347)
T KOG0647|consen 200 QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS-DGTFSFW 278 (347)
T ss_pred eeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecC-CceEEEe
Confidence 23445544444333332 233444444333 2224444454 35788999999889999999 9999999
Q ss_pred EccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEE
Q 036605 184 RCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILA 223 (340)
Q Consensus 184 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 223 (340)
|-+ ....+.... .++..+..+ .| +.+|.+++-
T Consensus 279 Dkd--ar~kLk~s~---~~~qpItcc--~f-n~~G~ifaY 310 (347)
T KOG0647|consen 279 DKD--ARTKLKTSE---THPQPITCC--SF-NRNGSIFAY 310 (347)
T ss_pred cch--hhhhhhccC---cCCCcccee--Ee-cCCCCEEEE
Confidence 973 333333322 333333333 44 555555543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-17 Score=143.80 Aligned_cols=215 Identities=14% Similarity=0.176 Sum_probs=168.5
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
||++..+-.+...-. ++.+..|..++|++.++ |++.+-+|.|.-||+.+++....+.. ..+.|++++
T Consensus 51 iwN~~~~w~~~~vi~--g~~drsIE~L~W~e~~R----------LFS~g~sg~i~EwDl~~lk~~~~~d~-~gg~IWsia 117 (691)
T KOG2048|consen 51 IWNLSNNWFLEPVIH--GPEDRSIESLAWAEGGR----------LFSSGLSGSITEWDLHTLKQKYNIDS-NGGAIWSIA 117 (691)
T ss_pred EEccCCCceeeEEEe--cCCCCceeeEEEccCCe----------EEeecCCceEEEEecccCceeEEecC-CCcceeEEE
Confidence 688888776643332 36678999999998778 88888999999999999999988887 888999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEE--eecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEee----
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIRE--FKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFS---- 152 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~---- 152 (340)
.+|.+..++.|+.||.+..++...++.... +...++.+.+++|+|++..+++|..+ |++||..++..+....
T Consensus 118 i~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d 197 (691)
T KOG2048|consen 118 INPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLD 197 (691)
T ss_pred eCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccc
Confidence 999999999999999888888887775543 44556889999999999988886554 9999999987765221
Q ss_pred ----cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCC
Q 036605 153 ----DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESG 228 (340)
Q Consensus 153 ----~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg 228 (340)
....-|+++.|-.++ .|+++.+ .|+|.+||. ..+.+..... .|..-+..+ .. .+++.++++++.|+
T Consensus 198 ~l~k~~~~iVWSv~~Lrd~-tI~sgDS-~G~V~FWd~--~~gTLiqS~~---~h~adVl~L--av-~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 198 RLSKREPTIVWSVLFLRDS-TIASGDS-AGTVTFWDS--IFGTLIQSHS---CHDADVLAL--AV-ADNEDRVFSAGVDP 267 (691)
T ss_pred ccccCCceEEEEEEEeecC-cEEEecC-CceEEEEcc--cCcchhhhhh---hhhcceeEE--EE-cCCCCeEEEccCCC
Confidence 123457888888666 6777666 999999998 4555555444 444444444 33 67788999999999
Q ss_pred cEEEEECCCC
Q 036605 229 VAYSWDLKTV 238 (340)
Q Consensus 229 ~i~vwd~~~~ 238 (340)
.|..|...+.
T Consensus 268 ~ii~~~~~~~ 277 (691)
T KOG2048|consen 268 KIIQYSLTTN 277 (691)
T ss_pred ceEEEEecCC
Confidence 9999987764
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-18 Score=148.52 Aligned_cols=209 Identities=13% Similarity=0.175 Sum_probs=164.8
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEec---CCCEEEEEeCCCcEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAK---KGRSLHVVGTNGMAS 98 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~s~~~dg~i~ 98 (340)
..+.|++.||+++ +||+|..-|+++||++..-+....+.. |...|.|+.|+. ..++|++++.|..|.
T Consensus 460 ~G~R~~~vSp~gq---------hLAsGDr~GnlrVy~Lq~l~~~~~~eA-HesEilcLeyS~p~~~~kLLASasrdRlIH 529 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQ---------HLASGDRGGNLRVYDLQELEYTCFMEA-HESEILCLEYSFPVLTNKLLASASRDRLIH 529 (1080)
T ss_pred cceEEEEECCCcc---------eecccCccCceEEEEehhhhhhhheec-ccceeEEEeecCchhhhHhhhhccCCceEE
Confidence 4689999999999 999999999999999999888888887 999999999985 346899999999999
Q ss_pred EEeCCCC-eEEEEeecCCCCeeEEEEccCC--CEEEEecCc-EEEEECCC-CceeEEeecC-----CCCeEEEEECCCCC
Q 036605 99 EMKSEMG-EVIREFKASEKPISSSAFLCEE--KIFALASSE-VRILSLEN-GEEVLKFSDD-----VGPLQYVSASDGAK 168 (340)
Q Consensus 99 ~wd~~~~-~~~~~~~~~~~~i~~l~~~~~~--~~l~~~~~~-i~i~d~~~-~~~~~~~~~~-----~~~v~~~~~s~~~~ 168 (340)
+||+... .++.++.+|...|+++.|.-.| ..+++++.+ ..+|+... ......|..| ...+..|+..|..+
T Consensus 530 V~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k 609 (1080)
T KOG1408|consen 530 VYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK 609 (1080)
T ss_pred EEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc
Confidence 9998643 4567788999999999998877 445554444 33444332 1111223222 35688999999999
Q ss_pred EEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 169 IIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 169 ~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
++++++. |+.|+||++ ..+++.+.+.-...|....+.+ .. .|.|.|+++.+.|.++.++|+.+++.+.....
T Consensus 610 ~v~t~cQ-Drnirif~i--~sgKq~k~FKgs~~~eG~lIKv--~l-DPSgiY~atScsdktl~~~Df~sgEcvA~m~G 681 (1080)
T KOG1408|consen 610 LVVTVCQ-DRNIRIFDI--ESGKQVKSFKGSRDHEGDLIKV--IL-DPSGIYLATSCSDKTLCFVDFVSGECVAQMTG 681 (1080)
T ss_pred eEEEEec-ccceEEEec--cccceeeeecccccCCCceEEE--EE-CCCccEEEEeecCCceEEEEeccchhhhhhcC
Confidence 9999888 999999999 6777767666555665555555 44 79999999999999999999999887764433
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-20 Score=166.38 Aligned_cols=204 Identities=15% Similarity=0.179 Sum_probs=162.7
Q ss_pred CCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-CCCCCeEEEEEecCC-CEEEEEeCCC
Q 036605 19 EPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-RHPGGLAGLAFAKKG-RSLHVVGTNG 95 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~h~~~v~~v~~~~~~-~~l~s~~~dg 95 (340)
.|.+.|..+.|++.+ . +||+|++||.|.|||+.+.+....+.. ...+.|.+++|+..- ..|++++.+|
T Consensus 114 ~h~G~V~gLDfN~~q~n---------lLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg 184 (1049)
T KOG0307|consen 114 KHTGPVLGLDFNPFQGN---------LLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSG 184 (1049)
T ss_pred ccCCceeeeeccccCCc---------eeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCC
Confidence 799999999999987 5 999999999999999988654444422 256789999998754 4688888999
Q ss_pred cEEEEeCCCCeEEEEeecCCC--CeeEEEEccCCCE-EEEecCc-----EEEEECCCCc-eeEEeecCCCCeEEEEECCC
Q 036605 96 MASEMKSEMGEVIREFKASEK--PISSSAFLCEEKI-FALASSE-----VRILSLENGE-EVLKFSDDVGPLQYVSASDG 166 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~~~~~--~i~~l~~~~~~~~-l~~~~~~-----i~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~ 166 (340)
.+.+||++..+.+..+..+.. .++.++|+|+... ++++.++ |.+||++.-. .++.+.+|...|.++.|++.
T Consensus 185 ~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 185 RAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred CceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCC
Confidence 999999999888877765544 4779999998743 3333333 9999998643 45777899999999999887
Q ss_pred C-CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 167 A-KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 167 ~-~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
+ .++++++. |+.|.+|+. ++++.+..+. ....+.+++ .|...+...+++++-||.|.||.+....
T Consensus 265 D~~lllSsgk-D~~ii~wN~--~tgEvl~~~p---~~~nW~fdv--~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 265 DPRLLLSSGK-DNRIICWNP--NTGEVLGELP---AQGNWCFDV--QWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CchhhhcccC-CCCeeEecC--CCceEeeecC---CCCcceeee--eecCCCcchhhhheeccceeeeeeecCC
Confidence 6 77788777 999999998 6777766665 456778888 6755666689999999999999998754
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-18 Score=145.00 Aligned_cols=201 Identities=16% Similarity=0.163 Sum_probs=149.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCC--EEEEEeCC--
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGR--SLHVVGTN-- 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~~~d-- 94 (340)
+|++.|.|+...|.|. +|++|+.||+|+||.+.+|++++++. ..+.|.||+|+|.+. .|+++-..
T Consensus 398 GHtg~Vr~iSvdp~G~---------wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGE---------WLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred ccCCeEEEEEecCCcc---------eeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCce
Confidence 8999999999999999 99999999999999999999988876 456778888877554 22221111
Q ss_pred ------------------------------CcEEEEeC------------------------------------------
Q 036605 95 ------------------------------GMASEMKS------------------------------------------ 102 (340)
Q Consensus 95 ------------------------------g~i~~wd~------------------------------------------ 102 (340)
+.+..|.-
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 11223321
Q ss_pred -------CCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc-EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEE
Q 036605 103 -------EMGEVIREFKASEKPISSSAFLCEEKIFALASSE-VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAG 174 (340)
Q Consensus 103 -------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~-i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 174 (340)
.......-|....+.+.++.|+|...+|+++... |++||+.....+.++......|..++.+|.|..|+.++
T Consensus 547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 1111111122335568899999999888776555 99999999887777766678899999999999999988
Q ss_pred cCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 175 YGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
. |+.+..||++..++. ...+. .|...+..+ ++ ++.-.++++|+.||.+.||...-.
T Consensus 627 ~-d~k~~WfDldlsskP-yk~lr---~H~~avr~V--a~-H~ryPLfas~sdDgtv~Vfhg~VY 682 (733)
T KOG0650|consen 627 Y-DKKMCWFDLDLSSKP-YKTLR---LHEKAVRSV--AF-HKRYPLFASGSDDGTVIVFHGMVY 682 (733)
T ss_pred C-CCeeEEEEcccCcch-hHHhh---hhhhhhhhh--hh-ccccceeeeecCCCcEEEEeeeee
Confidence 8 999999999755432 22222 566666666 66 788889999999999999976543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-18 Score=136.68 Aligned_cols=193 Identities=11% Similarity=0.155 Sum_probs=144.9
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEec--CCCEEEEEeCCCcEEEEeCCCCeEEEE--eecCC-CCe
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAK--KGRSLHVVGTNGMASEMKSEMGEVIRE--FKASE-KPI 118 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~-~~i 118 (340)
.+|++..+|.|++||..+++.+..+.+ ++..++.++|.. ....+++|+.||.|++||++....... +..+. .+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 699999999999999999999999998 999999999987 456899999999999999998765444 44444 466
Q ss_pred eEEEEccCCCEEEEecCc------EEEEECCCCce-eEEe-ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCC
Q 036605 119 SSSAFLCEEKIFALASSE------VRILSLENGEE-VLKF-SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSK 190 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~~~~------i~i~d~~~~~~-~~~~-~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~ 190 (340)
.+++..-.++.++++... |.+||++..+. +..+ ..|...|+++.|+|...-++.+|+-||.|.|||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~- 199 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN- 199 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc-
Confidence 777777677787775432 99999998766 5444 78999999999999766544445559999999984221
Q ss_pred CccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 036605 191 TVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
....+.-.+.+...+..+ .|.++....+.+-+..+...+|+++.+...
T Consensus 200 -EeDaL~~viN~~sSI~~i--gw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 200 -EEDALLHVINHGSSIHLI--GWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred -chhhHHHhhcccceeeee--eeecCCcceEEEEEccCceeEEEccCCChh
Confidence 111111112333334434 665666678999999999999999876543
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=145.10 Aligned_cols=201 Identities=10% Similarity=0.064 Sum_probs=161.3
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE--EEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK--WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
+.-+.++..+|||+ .|++|+.-.++.|||+...... ..+.. ..-..++++.+||.+..++|..||.|.
T Consensus 465 dnyiRSckL~pdgr---------tLivGGeastlsiWDLAapTprikaelts-sapaCyALa~spDakvcFsccsdGnI~ 534 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGR---------TLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDAKVCFSCCSDGNIA 534 (705)
T ss_pred ccceeeeEecCCCc---------eEEeccccceeeeeeccCCCcchhhhcCC-cchhhhhhhcCCccceeeeeccCCcEE
Confidence 35577888899998 8999999999999999876532 22332 223568899999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
|||+.+...+..|.+|...+.||.+++||..|-+++-+ |+.||++.++.+.... ..+.|.++.++|.+.+++.+-.
T Consensus 535 vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe- 612 (705)
T KOG0639|consen 535 VWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME- 612 (705)
T ss_pred EEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc-
Confidence 99999999999999999999999999999999887655 9999999997765432 2467899999999999999766
Q ss_pred CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 177 EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.+.+.|-.. ++.....+. .|...+..+ -| .+-|+++++.+.|+-+..|....+..+.
T Consensus 613 ns~vevlh~---skp~kyqlh---lheScVLSl--KF-a~cGkwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 613 NSNVEVLHT---SKPEKYQLH---LHESCVLSL--KF-AYCGKWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred cCcEEEEec---CCccceeec---ccccEEEEE--Ee-cccCceeeecCchhhhhhccCcccccee
Confidence 888888775 232222223 456666666 55 7789999999999999999887665544
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-17 Score=145.89 Aligned_cols=225 Identities=18% Similarity=0.269 Sum_probs=173.1
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|+|+..++.+..|+ +..+.|+.++|.-||. .++|+|+..|.+.+||++..+....+...|.+.|....
T Consensus 228 ifNlK~dkil~sFk----~d~g~VtslSFrtDG~--------p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~ 295 (910)
T KOG1539|consen 228 IFNLKFDKILMSFK----QDWGRVTSLSFRTDGN--------PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGAT 295 (910)
T ss_pred EEEcccCcEEEEEE----ccccceeEEEeccCCC--------eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccce
Confidence 45777788888888 4469999999999995 28999999999999999999988888877999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeE-----------------------------------------------------
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEV----------------------------------------------------- 107 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~----------------------------------------------------- 107 (340)
|.|....+++++.|..+++|-..++.-
T Consensus 296 fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~ 375 (910)
T KOG1539|consen 296 FLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ 375 (910)
T ss_pred ecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc
Confidence 999888999999998887774321100
Q ss_pred ----------------------E--------------------------EEe-----------------ecCCCCeeEEE
Q 036605 108 ----------------------I--------------------------REF-----------------KASEKPISSSA 122 (340)
Q Consensus 108 ----------------------~--------------------------~~~-----------------~~~~~~i~~l~ 122 (340)
+ .+| +.....+.+++
T Consensus 376 ~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 376 LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEE
Confidence 0 000 00113466777
Q ss_pred EccCCCEEEE--ecCcEEEEECCCCceeEEe---ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCce
Q 036605 123 FLCEEKIFAL--ASSEVRILSLENGEEVLKF---SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA 197 (340)
Q Consensus 123 ~~~~~~~l~~--~~~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~ 197 (340)
.++-|++.+. ..+.|-+|++++|-...+| ..|..+|+.++...-++.+++++. +|.+.+||+. .+.....+.
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~-~Gilkfw~f~--~k~l~~~l~ 532 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA-DGILKFWDFK--KKVLKKSLR 532 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC-cceEEEEecC--Ccceeeeec
Confidence 8888887766 4556999999999777777 589999999999999999999888 9999999983 332111000
Q ss_pred ----------------------------e----------eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 198 ----------------------------L----------SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 198 ----------------------------~----------~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
+ -.+|...+.++ .| +|||++|++++.|++|++||+.++.
T Consensus 533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~--~F-S~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM--TF-SPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee--Ee-CCCCcEEEEeecCCcEEEEeccCcc
Confidence 0 01355666666 66 9999999999999999999999987
Q ss_pred ccCC
Q 036605 240 QDEK 243 (340)
Q Consensus 240 ~~~~ 243 (340)
.+..
T Consensus 610 lID~ 613 (910)
T KOG1539|consen 610 LIDG 613 (910)
T ss_pred eeee
Confidence 7653
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=138.38 Aligned_cols=210 Identities=11% Similarity=0.067 Sum_probs=150.2
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE---EEe-----------------cCCCCCCeEEEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK---WKS-----------------TGRHPGGLAGLAF 81 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~---~~~-----------------~~~h~~~v~~v~~ 81 (340)
..-.|++|...+. +.++...|+|.|+-|..|.|||+.-...+ ..+ ..+|+..|.+++|
T Consensus 174 afPLC~ewld~~~--~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 174 AFPLCIEWLDHGS--KSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW 251 (463)
T ss_pred CcchhhhhhhcCC--CCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence 3447888854422 11222349999999999999997532110 000 1138889999999
Q ss_pred ecC-CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC-EEEEecC--cEEEEECCCCcee-EEeecCCC
Q 036605 82 AKK-GRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEK-IFALASS--EVRILSLENGEEV-LKFSDDVG 156 (340)
Q Consensus 82 ~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~--~i~i~d~~~~~~~-~~~~~~~~ 156 (340)
+.. .+.|++||.|.+|++||+.+|++...+..|...|.++.|+|... +|++++. ++.++|.+..... ..++ -.+
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g 330 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDG 330 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-ecc
Confidence 875 45899999999999999999999999999999999999999754 5566554 4999999853222 2232 246
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.|-.++|.|.....+.++..||+|+-+|+|. .++...... .|...+..+ +++.....++++++.|+.|++|++.
T Consensus 331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~-~~~~vwt~~---AHd~~ISgl--~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRN-PGKPVWTLK---AHDDEISGL--SVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred ceEEEEecCCCceeEEEecCCceEEeeecCC-CCCceeEEE---eccCCcceE--EecCCCCcceeeccccceEEEEeec
Confidence 7899999998776666676699999999973 333333333 565555444 3334566789999999999999997
Q ss_pred CCCc
Q 036605 237 TVSQ 240 (340)
Q Consensus 237 ~~~~ 240 (340)
....
T Consensus 405 ~~~~ 408 (463)
T KOG0270|consen 405 VDSP 408 (463)
T ss_pred CCCC
Confidence 6443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-18 Score=143.45 Aligned_cols=184 Identities=13% Similarity=0.210 Sum_probs=148.9
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC-CCeeEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASE-KPISSSA 122 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~i~~l~ 122 (340)
|+++|+..+.|.|||++...+.+.+.+ |+..|+++.++....+|++++..|.|.+..+.++.....|.... ..+.-+.
T Consensus 93 y~~sgG~~~~Vkiwdl~~kl~hr~lkd-h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 93 YEISGGQSGCVKIWDLRAKLIHRFLKD-HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR 171 (673)
T ss_pred eeeccCcCceeeehhhHHHHHhhhccC-CcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence 899999999999999996656666676 99999999999999999999999999999999988777787653 3466899
Q ss_pred EccCCCEEEE-ec--CcEEEEECCCCceeEEe-ecCCCCeEEEEECCCCCEE-EEEEcCCCeEEEEEccCCCCCccCCce
Q 036605 123 FLCEEKIFAL-AS--SEVRILSLENGEEVLKF-SDDVGPLQYVSASDGAKII-ITAGYGEKHLQVWRCDISSKTVNKGPA 197 (340)
Q Consensus 123 ~~~~~~~l~~-~~--~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l-~s~~~~d~~i~iwd~~~~~~~~~~~~~ 197 (340)
++|..+++++ ++ +.|.+||.....++..+ ..|..+...++|+|.+..| ++.|. |..|.+||.+ .+.....+
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~-Dkki~~yD~~--s~~s~~~l- 247 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY-DKKINIYDIR--SQASTDRL- 247 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc-cceEEEeecc--ccccccee-
Confidence 9999888765 33 33999999888777666 7899999999999987654 55566 9999999984 33332222
Q ss_pred eeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 198 LSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
...|+-...++ .++|.+|++|+..|.|+.||++..
T Consensus 248 -~y~~Plstvaf-----~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 248 -TYSHPLSTVAF-----SECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred -eecCCcceeee-----cCCceEEEeecCCceEEEEecccC
Confidence 23455444544 899999999999999999999874
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-16 Score=126.32 Aligned_cols=152 Identities=17% Similarity=0.263 Sum_probs=125.4
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCC--CCCCeEEEEEecCCCEEEEEe--CCCcE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGR--HPGGLAGLAFAKKGRSLHVVG--TNGMA 97 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~--~dg~i 97 (340)
.+|.++.+. -+ .|+++-.+. |+|||+.+.++++++... +...+.++++++.+.+|+.-+ ..|.|
T Consensus 88 t~IL~VrmN--r~---------RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 88 TSILAVRMN--RK---------RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred CceEEEEEc--cc---------eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 556666664 22 466665554 999999999999888652 556677777777777887643 34999
Q ss_pred EEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc---EEEEECCCCceeEEeecC--CCCeEEEEECCCCCEEEE
Q 036605 98 SEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE---VRILSLENGEEVLKFSDD--VGPLQYVSASDGAKIIIT 172 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~---i~i~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s 172 (340)
.+||..+-+.+..+.+|++.+.+++|+++|.+||+++.. |++|.+.+|+.+.+|.-. ...|.+++|+|++++|.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 999999999999999999999999999999999998766 999999999999998533 356889999999999988
Q ss_pred EEcCCCeEEEEEcc
Q 036605 173 AGYGEKHLQVWRCD 186 (340)
Q Consensus 173 ~~~~d~~i~iwd~~ 186 (340)
++. .++|+||.+.
T Consensus 236 sS~-TeTVHiFKL~ 248 (391)
T KOG2110|consen 236 SSN-TETVHIFKLE 248 (391)
T ss_pred ecC-CCeEEEEEec
Confidence 777 9999999984
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=144.55 Aligned_cols=206 Identities=11% Similarity=0.098 Sum_probs=161.8
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe----eEEEecCCCCCCeEEEEEecCCCEEEEEeC
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE----MKWKSTGRHPGGLAGLAFAKKGRSLHVVGT 93 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~ 93 (340)
++|...|+.++|+|.|. +|++.+.|-+-++|-.-..+ .+.+-+- |.-.++|++|-+....+++|..
T Consensus 358 SGH~~~V~dv~W~psGe---------flLsvs~DQTTRlFa~wg~q~~wHEiaRPQi-HGyDl~c~~~vn~~~~FVSgAd 427 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSGE---------FLLSVSLDQTTRLFARWGRQQEWHEIARPQI-HGYDLTCLSFVNEDLQFVSGAD 427 (764)
T ss_pred ccccccceeeeecCCCC---------EEEEeccccceeeecccccccceeeeccccc-ccccceeeehccCCceeeeccc
Confidence 59999999999999999 99999999999998654211 1222233 7888999999986667888888
Q ss_pred CCcEEEEeCCC-------------------------------------------Ce------------------------
Q 036605 94 NGMASEMKSEM-------------------------------------------GE------------------------ 106 (340)
Q Consensus 94 dg~i~~wd~~~-------------------------------------------~~------------------------ 106 (340)
...+++|+... |.
T Consensus 428 EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed 507 (764)
T KOG1063|consen 428 EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED 507 (764)
T ss_pred ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence 88889997531 00
Q ss_pred ---------EEEEeecCCCCeeEEEEccCCCEEEEecCc-------EEEEECCCCceeEEeecCCCCeEEEEECCCCCEE
Q 036605 107 ---------VIREFKASEKPISSSAFLCEEKIFALASSE-------VRILSLENGEEVLKFSDDVGPLQYVSASDGAKII 170 (340)
Q Consensus 107 ---------~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~-------i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 170 (340)
.++++.+|...|++++.+|++++++++-.. |++|+..+-.....+.+|.-.|+.++|||||+||
T Consensus 508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 508 QLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL 587 (764)
T ss_pred HHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence 012245788899999999999999995443 9999999988888899999999999999999999
Q ss_pred EEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 171 ITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 171 ~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
++.+. |+++.+|... ..-..-..+...-.|...+.++ .| +|++.+++++|.|..|.+|.....
T Consensus 588 LsvsR-DRt~sl~~~~-~~~~~e~~fa~~k~HtRIIWdc--sW-~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 588 LSVSR-DRTVSLYEVQ-EDIKDEFRFACLKAHTRIIWDC--SW-SPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEeec-CceEEeeeee-cccchhhhhccccccceEEEEc--cc-CcccceeEEecCCceEEEEeccCc
Confidence 99888 9999999972 1111111122223566666666 88 899999999999999999998876
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-18 Score=135.48 Aligned_cols=220 Identities=15% Similarity=0.164 Sum_probs=159.1
Q ss_pred ceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCC-C
Q 036605 8 SLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKG-R 86 (340)
Q Consensus 8 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~-~ 86 (340)
++++.+..+ .+++...-++|+-+-. .+..+||+|+.-|.|+|.|+.+++....+.+ |...|+.+.|+|+. +
T Consensus 78 r~lq~y~D~--d~~Esfytcsw~yd~~-----~~~p~la~~G~~GvIrVid~~~~~~~~~~~g-hG~sINeik~~p~~~q 149 (385)
T KOG1034|consen 78 RLLQSYADE--DHDESFYTCSWSYDSN-----TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRG-HGGSINEIKFHPDRPQ 149 (385)
T ss_pred eeeeeccCC--CCCcceEEEEEEecCC-----CCCeeEEeecceeEEEEEecchhhhccceec-cCccchhhhcCCCCCc
Confidence 344555544 5777777788976543 1345999999999999999999999989998 99999999999965 6
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEe---ecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeE------------
Q 036605 87 SLHVVGTNGMASEMKSEMGEVIREF---KASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVL------------ 149 (340)
Q Consensus 87 ~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~------------ 149 (340)
++++++.|..|++|++++...+..| .+|...|.++.|+++|.++++++-+ |++|++...+...
T Consensus 150 lvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~ 229 (385)
T KOG1034|consen 150 LVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNK 229 (385)
T ss_pred EEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCC
Confidence 8999999999999999999988875 5788999999999999999997665 9999997432110
Q ss_pred ----------------EeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCc---c------CCceeeecCCC
Q 036605 150 ----------------KFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTV---N------KGPALSMRHSP 204 (340)
Q Consensus 150 ----------------~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~---~------~~~~~~~~~~~ 204 (340)
+-..|...|.++.|- |.++++-+. ++.|..|.... -++. . ......+..+.
T Consensus 230 t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc-enaI~~w~pgk-l~e~~~~vkp~es~~Ti~~~~~~~~ 305 (385)
T KOG1034|consen 230 TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC-ENAIVCWKPGK-LEESIHNVKPPESATTILGEFDYPM 305 (385)
T ss_pred ccCcCCccccccccccccccccchHHHHHHH--hhheeeccc-CceEEEEecch-hhhhhhccCCCccceeeeeEeccCc
Confidence 012344555555553 568888777 89999998610 0111 0 01111111111
Q ss_pred -eeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 205 -VAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 205 -~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
.+.-+...+ .+-+..|+.|...|.|++||+.+.+.
T Consensus 306 c~iWfirf~~-d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 306 CDIWFIRFAF-DPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred cceEEEEEee-cHHHHHHhhccCCCcEEEEECCCCCC
Confidence 111222255 67788899999999999999987544
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=130.40 Aligned_cols=204 Identities=10% Similarity=0.036 Sum_probs=153.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCC-------CcEEEEEccCCe---------eEEEecCCCCCCeEEEEEe
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSN-------GDILAVDVLTGE---------MKWKSTGRHPGGLAGLAFA 82 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d-------g~i~i~d~~~~~---------~~~~~~~~h~~~v~~v~~~ 82 (340)
||.++|..++-+|-.+ .+|+++..+ -.+-||.+.... .+..+...+-+.|.|+.|.
T Consensus 61 h~agEvw~las~P~d~--------~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~ 132 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQ--------RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWE 132 (370)
T ss_pred cCCcceehhhcCCCCC--------ceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEc
Confidence 7889999999999873 177777653 246789876432 2334443466799999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeE-EEEee-----cCCCCeeEEEEcc--CCCEEEE-ecCcEEEEECCCCceeEEe-e
Q 036605 83 KKGRSLHVVGTNGMASEMKSEMGEV-IREFK-----ASEKPISSSAFLC--EEKIFAL-ASSEVRILSLENGEEVLKF-S 152 (340)
Q Consensus 83 ~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~-----~~~~~i~~l~~~~--~~~~l~~-~~~~i~i~d~~~~~~~~~~-~ 152 (340)
|++..+++.. |..|.+|++..+.. +..+. .+....++-+|+| ++..+++ .++++..||+++......+ .
T Consensus 133 Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 133 PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred CCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence 9999998866 78999999988765 33332 2344567778888 6777766 5666999999998777666 6
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEE
Q 036605 153 DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYS 232 (340)
Q Consensus 153 ~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~v 232 (340)
.|...|..+.|+|+-+++++++..||.|+|||.| ..+.....+. +|..++..+ -|...-..++++|+.|..|.+
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R-~tk~pv~el~---~HsHWvW~V--Rfn~~hdqLiLs~~SDs~V~L 285 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR-KTKFPVQELP---GHSHWVWAV--RFNPEHDQLILSGGSDSAVNL 285 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEecc-CCCccccccC---CCceEEEEE--EecCccceEEEecCCCceeEE
Confidence 7888999999999987766555559999999997 3444445555 788899888 443455678999999999999
Q ss_pred EECCC
Q 036605 233 WDLKT 237 (340)
Q Consensus 233 wd~~~ 237 (340)
|....
T Consensus 286 sca~s 290 (370)
T KOG1007|consen 286 SCASS 290 (370)
T ss_pred Eeccc
Confidence 97665
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-17 Score=127.08 Aligned_cols=157 Identities=8% Similarity=0.058 Sum_probs=132.8
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecC---CCEEEEEeCC
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKK---GRSLHVVGTN 94 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~---~~~l~s~~~d 94 (340)
.+|...|+.+.|-|-.. .++.+++-|.++++||+.+-+....|. .++.|+.-+|+|- ..++++|..|
T Consensus 98 ~~Hky~iss~~WyP~Dt--------GmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~ 167 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDT--------GMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRD 167 (397)
T ss_pred ccceeeeeeeEEeeecC--------ceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCC
Confidence 47889999999999874 179999999999999999988777776 6778999999883 3467778888
Q ss_pred CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE---ecCcEEEEECCCC-ceeEE--------------eecCCC
Q 036605 95 GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL---ASSEVRILSLENG-EEVLK--------------FSDDVG 156 (340)
Q Consensus 95 g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~---~~~~i~i~d~~~~-~~~~~--------------~~~~~~ 156 (340)
-.|++.|+.+|..-+.+.+|...|.++.|+|...+++. +++.|++||++.. ..+.. -..|.+
T Consensus 168 ~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~g 247 (397)
T KOG4283|consen 168 VQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYG 247 (397)
T ss_pred CcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccc
Confidence 99999999999999999999999999999999888744 5556999999753 12222 245778
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
.+..++|+.++.++++++. |..+++|+.
T Consensus 248 kvngla~tSd~~~l~~~gt-d~r~r~wn~ 275 (397)
T KOG4283|consen 248 KVNGLAWTSDARYLASCGT-DDRIRVWNM 275 (397)
T ss_pred eeeeeeecccchhhhhccC-ccceEEeec
Confidence 8999999999999999999 999999998
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.8e-18 Score=135.18 Aligned_cols=214 Identities=12% Similarity=0.153 Sum_probs=151.6
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC--CCCCCeEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG--RHPGGLAG 78 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--~h~~~v~~ 78 (340)
.|+.++++...+. +|...|+.+.|+|+. + ++++++.|.+|++||+++..++..+-+ +|.+.|.+
T Consensus 120 id~~~~~~~~~~~----ghG~sINeik~~p~~~q---------lvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 120 IDVVSGQCSKNYR----GHGGSINEIKFHPDRPQ---------LVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLS 186 (385)
T ss_pred Eecchhhhcccee----ccCccchhhhcCCCCCc---------EEEEecCCceEEEEeccCCeEEEEecccccccCcEEE
Confidence 4666777777777 899999999999998 6 999999999999999999998888765 69999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeEEEE----------------------------eecCCCCeeEEEEccCCCEE
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSEMGEVIRE----------------------------FKASEKPISSSAFLCEEKIF 130 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----------------------------~~~~~~~i~~l~~~~~~~~l 130 (340)
+.|+++|.++++|+.|..+++|++...+.... -.-|...|.|+.|- |.++
T Consensus 187 vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~i 264 (385)
T KOG1034|consen 187 VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFI 264 (385)
T ss_pred EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhe
Confidence 99999999999999999999999874321111 11234445555554 3566
Q ss_pred EE--ecCcEEEEECC-CCc-------------eeEEeecCCCCeEEEEE--CCCCCEEEEEEcCCCeEEEEEccCCCCCc
Q 036605 131 AL--ASSEVRILSLE-NGE-------------EVLKFSDDVGPLQYVSA--SDGAKIIITAGYGEKHLQVWRCDISSKTV 192 (340)
Q Consensus 131 ~~--~~~~i~i~d~~-~~~-------------~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~~d~~i~iwd~~~~~~~~ 192 (340)
++ +++.|..|... -++ .+.++.-....++-+.| .|-++.|+.+.. .|.|.+||++... .
T Consensus 265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq-~g~v~vwdL~~~e--p 341 (385)
T KOG1034|consen 265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ-SGKVYVWDLDNNE--P 341 (385)
T ss_pred eecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC-CCcEEEEECCCCC--C
Confidence 65 55569999762 111 12334334455666655 666888888776 9999999995322 2
Q ss_pred cCCceeeecC-CCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 193 NKGPALSMRH-SPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 193 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.....+.... ...+... ++ +.|+..|+..+.|+.|.-||..
T Consensus 342 ~~~ttl~~s~~~~tVRQ~--sf-S~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQT--SF-SRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCceEEeccccceeeee--ee-cccCcEEEEEeCCCcEEEEEee
Confidence 2222211111 1122222 45 8999999999999999999853
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-18 Score=138.46 Aligned_cols=170 Identities=14% Similarity=0.156 Sum_probs=138.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||...-..+..+. -....+.|+.|+|... .+|++|..|+.|.+||+.++..++.+. -...-+.|+
T Consensus 171 IWD~~R~~Pv~sms----wG~Dti~svkfNpvET--------sILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~Is 236 (433)
T KOG0268|consen 171 IWDEQRDNPVSSMS----WGADSISSVKFNPVET--------SILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTIC 236 (433)
T ss_pred ecccccCCccceee----cCCCceeEEecCCCcc--------hheeeeccCCceEEEecccCCccceee--eecccccee
Confidence 57776666666665 4457889999999884 288889899999999999999887776 455778999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCe-EEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEe-ecCCC
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGE-VIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKF-SDDVG 156 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~-~~~~~ 156 (340)
|+|.+-.+.+++.|..++.+|++.-. ++....+|.+.|.+++|+|.|+.+++++.+ |+||....+..--.+ ...-.
T Consensus 237 wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq 316 (433)
T KOG0268|consen 237 WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ 316 (433)
T ss_pred cCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhh
Confidence 99977788889999999999988654 455677899999999999999999998776 999998876433222 12236
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
.|.++.|+-|.+|+++|+. |+.|++|..
T Consensus 317 ~V~~Vk~S~Dskyi~SGSd-d~nvRlWka 344 (433)
T KOG0268|consen 317 HVFCVKYSMDSKYIISGSD-DGNVRLWKA 344 (433)
T ss_pred eeeEEEEeccccEEEecCC-Ccceeeeec
Confidence 7899999999999999777 999999997
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-18 Score=156.52 Aligned_cols=210 Identities=19% Similarity=0.175 Sum_probs=157.1
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC---Ce---eEEEecCCCCCCeEEEEEecCCC-EEEEEeC
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT---GE---MKWKSTGRHPGGLAGLAFAKKGR-SLHVVGT 93 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~---~~---~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~ 93 (340)
......|+|++.+.+- ..+||.|..||.|.+||... +. .+.++.. |.+.|..+.|++... +|++|+.
T Consensus 64 ~~rF~kL~W~~~g~~~-----~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHS-----HGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred cccceeeeecccCCCc-----cceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccCC
Confidence 4678899999887510 12699999999999999765 21 3445555 999999999999655 9999999
Q ss_pred CCcEEEEeCCCCeEEEEee--cCCCCeeEEEEccCCCEE-EEecC--cEEEEECCCCceeEEeecCCC--CeEEEEECCC
Q 036605 94 NGMASEMKSEMGEVIREFK--ASEKPISSSAFLCEEKIF-ALASS--EVRILSLENGEEVLKFSDDVG--PLQYVSASDG 166 (340)
Q Consensus 94 dg~i~~wd~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l-~~~~~--~i~i~d~~~~~~~~~~~~~~~--~v~~~~~s~~ 166 (340)
||.|.+||+..-+.-.... .....|.+++|+..-.++ ++++. .+.|||++..+.+..+..+.. .+..++|+|+
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 9999999998644332221 134679999999865544 55443 499999999988888765554 5778999998
Q ss_pred CC-EEEEEEcCC--CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 167 AK-IIITAGYGE--KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 167 ~~-~l~s~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+. .+++++..| -.|.+||+|..+ .....+. .|...++.+ .|...|..+|++++.|++|.+|+.++++.+.
T Consensus 218 ~aTql~~As~dd~~PviqlWDlR~as-sP~k~~~---~H~~Gilsl--sWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 218 HATQLLVASGDDSAPVIQLWDLRFAS-SPLKILE---GHQRGILSL--SWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred CceeeeeecCCCCCceeEeecccccC-Cchhhhc---ccccceeee--ccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 64 344444433 469999997332 2333444 788888888 8866777999999999999999999977766
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-17 Score=143.18 Aligned_cols=217 Identities=16% Similarity=0.176 Sum_probs=156.9
Q ss_pred CccCCCC-ceeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCee-----EEEecCCCC
Q 036605 1 IWSTNDG-SLLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEM-----KWKSTGRHP 73 (340)
Q Consensus 1 vwd~~~g-~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-----~~~~~~~h~ 73 (340)
|||..+. .....+. -...|+|+.|+|.. . ++|.|+.+|.|.+||+..+.. +......|.
T Consensus 226 vW~~~~p~~Pe~~~~-----~~s~v~~~~f~p~~p~---------ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~ 291 (555)
T KOG1587|consen 226 VWSLKNPNTPELVLE-----SPSEVTCLKFCPFDPN---------LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS 291 (555)
T ss_pred EEecCCCCCceEEEe-----cCCceeEEEeccCCcc---------eEEeeccCceEEEEEccCCCCCCCcccccccccCC
Confidence 5776554 2333333 45899999999987 5 899999999999999987764 223334699
Q ss_pred CCeEEEEEecCCC--EEEEEeCCCcEEEEeCCCC---------------------------------------------e
Q 036605 74 GGLAGLAFAKKGR--SLHVVGTNGMASEMKSEMG---------------------------------------------E 106 (340)
Q Consensus 74 ~~v~~v~~~~~~~--~l~s~~~dg~i~~wd~~~~---------------------------------------------~ 106 (340)
.+++.+.|..+.. -+++++.||.|..|+++.- .
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~ 371 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK 371 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE
Confidence 9999999976544 4999999999999986521 0
Q ss_pred EE------------------EEeecCCCCeeEEEEccCCCEEEE--ecCcEEEEECC-CCceeEEeecCCCCeEEEEECC
Q 036605 107 VI------------------REFKASEKPISSSAFLCEEKIFAL--ASSEVRILSLE-NGEEVLKFSDDVGPLQYVSASD 165 (340)
Q Consensus 107 ~~------------------~~~~~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~-~~~~~~~~~~~~~~v~~~~~s~ 165 (340)
.. ..+..|.++|+++.++|-+..++. +|..++||... ...++..+..+...+++++|||
T Consensus 372 v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSp 451 (555)
T KOG1587|consen 372 VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSP 451 (555)
T ss_pred EEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcC
Confidence 00 112235677888999997765543 55559999988 6677777877888899999999
Q ss_pred CCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 166 GAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 166 ~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
....++.+...||.+.+||+............ +. .+....+ .| ++.|..|++|...|.+++|++..
T Consensus 452 trpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~--~~-~~~l~~~--~~-s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 452 TRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK--VC-SPALTRV--RW-SPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCceEEEEEcCCCceehhhhhccccCCccccc--cc-cccccee--ec-CCCCcEEEEecCCCcEEEEEcCc
Confidence 98888887888999999999543333222222 12 1111112 33 78899999999999999999854
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=131.10 Aligned_cols=173 Identities=14% Similarity=0.167 Sum_probs=134.7
Q ss_pred CccCCCCceeeeeeCCCCCCCC---CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEc-cCCee--E-EEec---C
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVV---SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDV-LTGEM--K-WKST---G 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~-~~~~~--~-~~~~---~ 70 (340)
|||..+|++...|..- .|-. ...||+|+|||. .|++| ....|++||+ +.|+. + .++. .
T Consensus 137 ~wdaftG~lraSy~~y--dh~de~taAhsL~Fs~DGe---------qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 137 LWDAFTGKLRASYRAY--DHQDEYTAAHSLQFSPDGE---------QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeeccccccccchhhh--hhHHhhhhheeEEecCCCC---------eEeec-ccceEEEeeccCCCCCCcchhhhhcccc
Confidence 6999999999888754 3443 456899999998 67776 4668999998 44431 1 1111 1
Q ss_pred CCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc---EEEEECCCC-
Q 036605 71 RHPGGLAGLAFAKKGR-SLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE---VRILSLENG- 145 (340)
Q Consensus 71 ~h~~~v~~v~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~---i~i~d~~~~- 145 (340)
+..+.|.+++|+|... .++.++....+-++.-..+.++..+.+|.+.|+.+.|.++|+.|+++.+. |..||++..
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 2467899999999655 78888888888888888889999999999999999999999999997765 999999864
Q ss_pred ceeEEeecCCC-CeEEEEE--CCCCCEEEEEEcCCCeEEEEEcc
Q 036605 146 EEVLKFSDDVG-PLQYVSA--SDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 146 ~~~~~~~~~~~-~v~~~~~--s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
.++..+..|.. .-..|.| .|++++|++++. ||.|++||+.
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t-dG~V~vwdlk 327 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDT-DGSVRVWDLK 327 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCC-CccEEEEecC
Confidence 45566666665 3334555 788999999777 9999999984
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-16 Score=123.42 Aligned_cols=206 Identities=14% Similarity=0.132 Sum_probs=148.4
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe----eEEEecCCCCCCeEEEEEec--CCCEEEEE
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE----MKWKSTGRHPGGLAGLAFAK--KGRSLHVV 91 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~~h~~~v~~v~~~~--~~~~l~s~ 91 (340)
.+|..-|+|+.|.+-|+ .+|+|+.|++|.|||..... +...... |.+.|..+.|.+ -|+.+++|
T Consensus 10 s~h~DlihdVs~D~~GR---------RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGqvvA~c 79 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR---------RMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQVVATC 79 (361)
T ss_pred cCCcceeeeeeecccCc---------eeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccceEEEE
Confidence 57889999999999998 89999999999999975543 3334455 999999999976 48899999
Q ss_pred eCCCcEEEEeCCC---------CeEEEEeecCCCCeeEEEEccC--CCEEEE--ecCcEEEEECCCCcee------EEee
Q 036605 92 GTNGMASEMKSEM---------GEVIREFKASEKPISSSAFLCE--EKIFAL--ASSEVRILSLENGEEV------LKFS 152 (340)
Q Consensus 92 ~~dg~i~~wd~~~---------~~~~~~~~~~~~~i~~l~~~~~--~~~l~~--~~~~i~i~d~~~~~~~------~~~~ 152 (340)
+.|+++.+|.-.. .....++......|+.+.|.|. |..+++ +++.++||+.-..-.+ ..+.
T Consensus 80 S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~ 159 (361)
T KOG2445|consen 80 SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ 159 (361)
T ss_pred ecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence 9999999997521 1233446667788999999996 455666 5556999987543222 2222
Q ss_pred -------cCCCCeEEEEECCC---CCEEEEEEcC----CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCC---C
Q 036605 153 -------DDVGPLQYVSASDG---AKIIITAGYG----EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPN---G 215 (340)
Q Consensus 153 -------~~~~~v~~~~~s~~---~~~l~s~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 215 (340)
.+..+..++.|+|. ..+|+.++.. -+.+.||..+....+......+. ++...+.++ +|. .
T Consensus 160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di--~wAPn~G 236 (361)
T KOG2445|consen 160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDI--SWAPNIG 236 (361)
T ss_pred hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceee--eeccccC
Confidence 35577889999875 4567775542 14899998853333333333332 777778777 552 2
Q ss_pred CCCCEEEEEeCCCcEEEEECCC
Q 036605 216 EDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 216 ~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.....|++++.|| |+||.+..
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred CceeeEEEeecCc-EEEEEEee
Confidence 2345789999999 99999985
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-17 Score=136.83 Aligned_cols=190 Identities=14% Similarity=0.138 Sum_probs=148.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+....+.+.++ +|...|+|+.+.-... |||+++..|.|.|..+.++.....|.......|.-+.
T Consensus 105 iwdl~~kl~hr~lk----dh~stvt~v~YN~~De---------yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 105 IWDLRAKLIHRFLK----DHQSTVTYVDYNNTDE---------YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR 171 (673)
T ss_pred ehhhHHHHHhhhcc----CCcceeEEEEecCCcc---------eeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence 68988666666666 8999999999998888 9999999999999999998877677642344567999
Q ss_pred EecCCC-EEEEEeCCCcEEEEeCCCCeEEEEe-ecCCCCeeEEEEccCCCEE-EEecCc--EEEEECCCCceeEEeecCC
Q 036605 81 FAKKGR-SLHVVGTNGMASEMKSEMGEVIREF-KASEKPISSSAFLCEEKIF-ALASSE--VRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 81 ~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l-~~~~~~--i~i~d~~~~~~~~~~~~~~ 155 (340)
|+|..+ +|.+++.+|.|.+||+....++..+ +.|..+...|+|+|....| ++.+.+ |.+||.+..+....+. ..
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~ 250 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YS 250 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ec
Confidence 999776 4667888999999999887777664 5788999999999987655 554444 9999999876665554 35
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeee
Q 036605 156 GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDC 209 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (340)
.+...++|+++|.+|+++.. .|.|..||+| ..+....... .|...+..+
T Consensus 251 ~Plstvaf~~~G~~L~aG~s-~G~~i~YD~R-~~k~Pv~v~s---ah~~sVt~v 299 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNS-KGELIAYDMR-STKAPVAVRS---AHDASVTRV 299 (673)
T ss_pred CCcceeeecCCceEEEeecC-CceEEEEecc-cCCCCceEee---ecccceeEE
Confidence 68899999999999988777 9999999997 3444444444 555555544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-17 Score=129.20 Aligned_cols=167 Identities=17% Similarity=0.279 Sum_probs=131.5
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC---Ce-----eEEEecCCC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT---GE-----MKWKSTGRH 72 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~---~~-----~~~~~~~~h 72 (340)
||++. |+++..+. .....-+..+.||+|+ ++|+++-.-.|.+|.+-- |. .+..+.+ |
T Consensus 213 lw~lk-Gq~L~~id----tnq~~n~~aavSP~GR---------Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG-H 277 (420)
T KOG2096|consen 213 LWDLK-GQLLQSID----TNQSSNYDAAVSPDGR---------FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG-H 277 (420)
T ss_pred EEecC-Cceeeeec----cccccccceeeCCCCc---------EEEEecCCCCceEEEEEeccCcchhhhhhhheecc-c
Confidence 58887 88887766 3344556678999999 999999999999998642 22 3445677 9
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC-------eEEEE----eecCCCCeeEEEEccCCCEEEEecCc-EEEE
Q 036605 73 PGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMG-------EVIRE----FKASEKPISSSAFLCEEKIFALASSE-VRIL 140 (340)
Q Consensus 73 ~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~-------~~~~~----~~~~~~~i~~l~~~~~~~~l~~~~~~-i~i~ 140 (340)
+..|..++|+++...+++.+.||.+++||..-. +.+.. +....+....++++|+|..|+.+.+. +++|
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVF 357 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEE
Confidence 999999999999999999999999999997521 11111 11223334589999999999886555 9999
Q ss_pred ECCCCceeEEe-ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEE
Q 036605 141 SLENGEEVLKF-SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWR 184 (340)
Q Consensus 141 d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd 184 (340)
..++++....+ ..|...|.+++|+++|++++++| |+.++++.
T Consensus 358 ~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG--dr~vrv~~ 400 (420)
T KOG2096|consen 358 ASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG--DRYVRVIR 400 (420)
T ss_pred EcccCccchhHHHhhcCceeeEEecCCCcEEeeec--ceeeeeec
Confidence 99999877666 67899999999999999999965 68888876
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-16 Score=124.15 Aligned_cols=206 Identities=12% Similarity=0.085 Sum_probs=155.3
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe---eEEEecCCCCCCeEEEEEecCCCEEEEEeCCCc
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE---MKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGM 96 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~ 96 (340)
...+|+|.+|++|.. .+|++.++..|.||...... ..+++.. |...|++|+|+|..+.|++|+.|..
T Consensus 9 ~~~pitchAwn~drt---------~iAv~~~~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT---------QIAVSPNNHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred ccCceeeeeecCCCc---------eEEeccCCceEEEEEecCCCCceeceehhh-hCcceeEEeecCCCCceeEccCCCC
Confidence 347999999999998 89999999999999987665 5667777 9999999999999999999999999
Q ss_pred EEEEeCC-CCe--EEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCce--eE-Ee-ecCCCCeEEEEECCCC
Q 036605 97 ASEMKSE-MGE--VIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEE--VL-KF-SDDVGPLQYVSASDGA 167 (340)
Q Consensus 97 i~~wd~~-~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~--~~-~~-~~~~~~v~~~~~s~~~ 167 (340)
-++|... .++ +...+..+....+++.|+|.++.++++++. |.||-++.... +. .+ ..+.+.|.++.|+|++
T Consensus 79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 9999984 333 333455678889999999999999997665 66666554321 11 11 3456789999999999
Q ss_pred CEEEEEEcCCCeEEEEEccCCC---CCc---------cCCceeee-cCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 168 KIIITAGYGEKHLQVWRCDISS---KTV---------NKGPALSM-RHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~~~~~---~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
-.+++++. |+..+||..-... +.. ...+.... ....++..+ .| ++.|..|+-.+.|+.+.+-|
T Consensus 159 VLlaaGs~-D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v--~f-s~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 159 VLLAAGST-DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGV--LF-SPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred ceeccccc-CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeee--Ee-CCCCCEeeEecCCCceEEee
Confidence 88888766 9999999752111 100 00011111 234455556 66 89999999999999999999
Q ss_pred CCCCC
Q 036605 235 LKTVS 239 (340)
Q Consensus 235 ~~~~~ 239 (340)
.....
T Consensus 235 a~~p~ 239 (361)
T KOG1523|consen 235 AAGPS 239 (361)
T ss_pred cCCCc
Confidence 87765
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.3e-17 Score=139.86 Aligned_cols=206 Identities=15% Similarity=0.089 Sum_probs=153.8
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCC-----CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSN-----GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG 92 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 92 (340)
.+|...|.|++.+|+++ ++|+++.. ..|++|+..+-.....+.+ |.-.|+.++|+|||++|++++
T Consensus 522 YGHGyEv~~l~~s~~gn---------liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~~LLsvs 591 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTGN---------LIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGRYLLSVS 591 (764)
T ss_pred ccCceeEEEEEecCCCC---------EEeehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCCcEEEEee
Confidence 48999999999999999 99998765 4689999888877778888 999999999999999999999
Q ss_pred CCCcEEEEeCCCCeE----EEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCC--ceeEE--eecCCCCeEEEE
Q 036605 93 TNGMASEMKSEMGEV----IREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENG--EEVLK--FSDDVGPLQYVS 162 (340)
Q Consensus 93 ~dg~i~~wd~~~~~~----~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~--~~~~~--~~~~~~~v~~~~ 162 (340)
.|.++.+|....... ....+.|..-|.+..|+|++.++++++++ |++|..... +.+.. ...+...|+.++
T Consensus 592 RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~ 671 (764)
T KOG1063|consen 592 RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA 671 (764)
T ss_pred cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence 999999998754332 12356788899999999999999999888 999998877 44433 245678899998
Q ss_pred ECC----CCCEEEEEEcCCCeEEEEEccCCCCCccC--------CceeeecCCCeeeeeecCCC---------CCCCCEE
Q 036605 163 ASD----GAKIIITAGYGEKHLQVWRCDISSKTVNK--------GPALSMRHSPVAIDCKNSPN---------GEDGTVI 221 (340)
Q Consensus 163 ~s~----~~~~l~s~~~~d~~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~---------~~~~~~l 221 (340)
+.| +..++++.|...|.|.+|...... ++.. ...-.+.+...+..+ .|. ..+...|
T Consensus 672 ~~~~~~~e~~~~vavGle~GeI~l~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~aV~rl--~w~p~~~~~~~~~~~~l~l 748 (764)
T KOG1063|consen 672 YLPVDHNEKGDVVAVGLEKGEIVLWRRKREH-RQVTVGTFNLDTRLCATIGPDSAVNRL--LWRPTCSDDWVEDKEWLNL 748 (764)
T ss_pred eeccccccccceEEEEecccEEEEEeccccc-ccccceeeeeccccccccChHHhhhee--EeccccccccccccceeEE
Confidence 855 334467767779999999973111 1111 111111222233333 221 2334567
Q ss_pred EEEeCCCcEEEEECC
Q 036605 222 LAVAESGVAYSWDLK 236 (340)
Q Consensus 222 ~~~s~dg~i~vwd~~ 236 (340)
++|+.|..++++++.
T Consensus 749 a~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 749 AVGGDDESVRIFNVD 763 (764)
T ss_pred eeecccceeEEeecc
Confidence 999999999999874
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=131.88 Aligned_cols=209 Identities=15% Similarity=0.052 Sum_probs=158.5
Q ss_pred CCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q 036605 19 EPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG 95 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg 95 (340)
.|+.+|++|.|+|.. . .+++.+.||+|++-|++++. .+..+.. -...+..+.|+.+...++.++.=|
T Consensus 232 ~hs~~Vs~l~F~P~n~s---------~i~ssSyDGtiR~~D~~~~i~e~v~s~~~-d~~~fs~~d~~~e~~~vl~~~~~G 301 (498)
T KOG4328|consen 232 PHSGPVSGLKFSPANTS---------QIYSSSYDGTIRLQDFEGNISEEVLSLDT-DNIWFSSLDFSAESRSVLFGDNVG 301 (498)
T ss_pred cCCccccceEecCCChh---------heeeeccCceeeeeeecchhhHHHhhcCc-cceeeeeccccCCCccEEEeeccc
Confidence 789999999999988 4 69999999999999998764 2333332 344567888888888888888878
Q ss_pred cEEEEeCCCCeE-EEEeecCCCCeeEEEEccCCCEE-EEec--CcEEEEECCCCce----eEEeecCCCCeEEEEECCCC
Q 036605 96 MASEMKSEMGEV-IREFKASEKPISSSAFLCEEKIF-ALAS--SEVRILSLENGEE----VLKFSDDVGPLQYVSASDGA 167 (340)
Q Consensus 96 ~i~~wd~~~~~~-~~~~~~~~~~i~~l~~~~~~~~l-~~~~--~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~s~~~ 167 (340)
...+||.+++.. ...+..|+..|.+++++|-..++ ++++ ++.+|||++.... +.....|.-.|.+..|||++
T Consensus 302 ~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 302 NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 999999998765 55677888899999999987665 5544 4499999976422 23446789999999999998
Q ss_pred CEEEEEEcCCCeEEEEEccCC-CCCccCCceeeecCC----CeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 168 KIIITAGYGEKHLQVWRCDIS-SKTVNKGPALSMRHS----PVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
-.|++.+. |..|+|||...- .... ....+.|. .+...+.+.| .|+..++++|..-..|-|||-..++.+.
T Consensus 382 gtl~TT~~-D~~IRv~dss~~sa~~~---p~~~I~Hn~~t~RwlT~fKA~W-~P~~~li~vg~~~r~IDv~~~~~~q~v~ 456 (498)
T KOG4328|consen 382 GTLLTTCQ-DNEIRVFDSSCISAKDE---PLGTIPHNNRTGRWLTPFKAAW-DPDYNLIVVGRYPRPIDVFDGNGGQMVC 456 (498)
T ss_pred CceEeecc-CCceEEeecccccccCC---ccceeeccCcccccccchhhee-CCCccEEEEeccCcceeEEcCCCCEEee
Confidence 88999888 999999996210 1111 11112332 3444555677 8999999999999999999998877443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-15 Score=128.11 Aligned_cols=210 Identities=13% Similarity=0.135 Sum_probs=151.1
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAF 81 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 81 (340)
|++..|.+......-......-|.|++|.++|. +++|.++|.|.||+..+.+..+.... |.+.|.+++.
T Consensus 227 w~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd----------viTgDS~G~i~Iw~~~~~~~~k~~~a-H~ggv~~L~~ 295 (626)
T KOG2106|consen 227 WTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD----------VITGDSGGNILIWSKGTNRISKQVHA-HDGGVFSLCM 295 (626)
T ss_pred EEccCCceEEEeeccccccceEEEEEEEcCCCC----------EEeecCCceEEEEeCCCceEEeEeee-cCCceEEEEE
Confidence 777777655322111123347899999999999 99999999999999988777766664 9999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCe----------------------E------------------EEEeecCCCCeeEE
Q 036605 82 AKKGRSLHVVGTNGMASEMKSEMGE----------------------V------------------IREFKASEKPISSS 121 (340)
Q Consensus 82 ~~~~~~l~s~~~dg~i~~wd~~~~~----------------------~------------------~~~~~~~~~~i~~l 121 (340)
..+|.+|- |+.|..|..||-.-.+ . .....+|......+
T Consensus 296 lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgl 374 (626)
T KOG2106|consen 296 LRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGL 374 (626)
T ss_pred ecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeE
Confidence 98886554 9999999999832100 0 01123566677889
Q ss_pred EEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceee
Q 036605 122 AFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALS 199 (340)
Q Consensus 122 ~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~ 199 (340)
+.+|+...+++++.+ +++|+ ..+.+... .-..++.++.|+|.| .++.+.. .|...+.|. .+........
T Consensus 375 a~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~-~G~w~V~d~--e~~~lv~~~~-- 445 (626)
T KOG2106|consen 375 ATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTA-TGRWFVLDT--ETQDLVTIHT-- 445 (626)
T ss_pred EcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeec-cceEEEEec--ccceeEEEEe--
Confidence 999999989887766 99999 33333222 234678899999999 7777665 899999998 4433222222
Q ss_pred ecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 200 MRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
. ......+ .+ +|+|.+|+.|+.|+.|++|.+..
T Consensus 446 -d-~~~ls~v--~y-sp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 446 -D-NEQLSVV--RY-SPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred -c-CCceEEE--EE-cCCCCEEEEecCCCeEEEEEECC
Confidence 2 2222222 33 89999999999999999998876
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-16 Score=136.35 Aligned_cols=211 Identities=17% Similarity=0.183 Sum_probs=153.6
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEec-----------
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKST----------- 69 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~----------- 69 (340)
|||++.|.++.+++ +|...|.|++|+.||+ .+|+|+.|..|.+|+.+-...+ ++.
T Consensus 37 iyD~ndG~llqtLK----gHKDtVycVAys~dGk---------rFASG~aDK~VI~W~~klEG~L-kYSH~D~IQCMsFN 102 (1081)
T KOG1538|consen 37 VYDTSDGTLLQPLK----GHKDTVYCVAYAKDGK---------RFASGSADKSVIIWTSKLEGIL-KYSHNDAIQCMSFN 102 (1081)
T ss_pred EEeCCCcccccccc----cccceEEEEEEccCCc---------eeccCCCceeEEEeccccccee-eeccCCeeeEeecC
Confidence 68999999999998 9999999999999999 8999999999999985422111 110
Q ss_pred -------------------------C-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEee---cCCCCeeE
Q 036605 70 -------------------------G-RHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK---ASEKPISS 120 (340)
Q Consensus 70 -------------------------~-~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~i~~ 120 (340)
. .....|.+.+|..||++|+.|-.+|+|.+-+- +++....+. +...+|.+
T Consensus 103 P~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiws 181 (1081)
T KOG1538|consen 103 PITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWS 181 (1081)
T ss_pred chHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceE
Confidence 0 01235677788888888888888888888753 455444444 36778999
Q ss_pred EEEccCC-----CEEEE--ecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCcc
Q 036605 121 SAFLCEE-----KIFAL--ASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVN 193 (340)
Q Consensus 121 l~~~~~~-----~~l~~--~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~ 193 (340)
++|+|.. ..+++ .+.++.+|.+.. +.+.+-..-.....++.+-++|.|++.+|. |+.+.+|-- .+-..
T Consensus 182 i~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGs-dk~L~~fTR---~GvrL 256 (1081)
T KOG1538|consen 182 ICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGS-DKQLSLFTR---DGVRL 256 (1081)
T ss_pred EEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccC-CCceEEEee---cCeEE
Confidence 9999964 34444 344477777653 344333334455678999999999999999 999999974 34333
Q ss_pred CCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 194 KGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.... ....+++.+ .. .|++++++.|+.||+|-.|++..
T Consensus 257 GTvg---~~D~WIWtV--~~-~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 257 GTVG---EQDSWIWTV--QA-KPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eecc---ccceeEEEE--EE-ccCCceEEEEEccCeeehhhhHH
Confidence 3333 344455555 44 89999999999999999998754
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.9e-16 Score=121.52 Aligned_cols=220 Identities=13% Similarity=0.228 Sum_probs=149.7
Q ss_pred CccCC--CC--ceeeeeeCCCCCCCCCeEEEEeecc--ccccccccCceEEEEEcCCCcEEEEEccCC-------e--eE
Q 036605 1 IWSTN--DG--SLLAEWKQPDGEPVVSYSCLACGFV--GKKRRKERGTLLLALGTSNGDILAVDVLTG-------E--MK 65 (340)
Q Consensus 1 vwd~~--~g--~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-------~--~~ 65 (340)
|||.. +| .+...++ .|++.|..+.|.+. |+ .+|+++.|+++.||.-... + ..
T Consensus 39 I~d~~~~s~~W~~Ts~Wr----ah~~Si~rV~WAhPEfGq---------vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ 105 (361)
T KOG2445|consen 39 IWDSTSDSGTWSCTSSWR----AHDGSIWRVVWAHPEFGQ---------VVATCSYDRTVSIWEEQEKSEEAHGRRWVRR 105 (361)
T ss_pred EEeccCCCCceEEeeeEE----ecCCcEEEEEecCccccc---------eEEEEecCCceeeeeecccccccccceeEEE
Confidence 56643 23 3446676 89999999999655 47 8999999999999974211 1 23
Q ss_pred EEecCCCCCCeEEEEEec--CCCEEEEEeCCCcEEEEeCCCCeEEEE------ee-------cCCCCeeEEEEccC---C
Q 036605 66 WKSTGRHPGGLAGLAFAK--KGRSLHVVGTNGMASEMKSEMGEVIRE------FK-------ASEKPISSSAFLCE---E 127 (340)
Q Consensus 66 ~~~~~~h~~~v~~v~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~------~~-------~~~~~i~~l~~~~~---~ 127 (340)
.++.. ..+.|+++.|.| -|-.|++++.||.+++|+...--.+.. +. .+..+..|+.|+|. .
T Consensus 106 ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~ 184 (361)
T KOG2445|consen 106 TTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHE 184 (361)
T ss_pred EEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccC
Confidence 34455 677999999998 466899999999999998764332222 22 34556789999975 3
Q ss_pred CEEEEecC-------cEEEEECCCC----ceeEEeecCCCCeEEEEECCCC---CEEEEEEcCCCeEEEEEccCCC----
Q 036605 128 KIFALASS-------EVRILSLENG----EEVLKFSDDVGPLQYVSASDGA---KIIITAGYGEKHLQVWRCDISS---- 189 (340)
Q Consensus 128 ~~l~~~~~-------~i~i~d~~~~----~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~~d~~i~iwd~~~~~---- 189 (340)
.+++++.. +++||....+ ..+.++.+|..+|+.++|.|+- .++++.+..|| |+||.+....
T Consensus 185 p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~ 263 (361)
T KOG2445|consen 185 PLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIE 263 (361)
T ss_pred ceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhh
Confidence 56666433 3888876543 2346678999999999999972 24444455589 9999995211
Q ss_pred ------CCcc-----CCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 190 ------KTVN-----KGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 190 ------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.... ..+...-.|...+..+ .| .-.|..|.+.+.||.|++|...-.
T Consensus 264 ~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv--~w-NmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 264 EEEVLAPDLMTDLPVEKVSELDDHNGEVWRV--RW-NMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred hhcccCCCCccccceEEeeeccCCCCceEEE--EE-eeeeeEEeecCCCceeeehhhhhh
Confidence 0000 0111111455556665 66 677899999999999999976543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=136.23 Aligned_cols=196 Identities=13% Similarity=0.196 Sum_probs=137.7
Q ss_pred EEEEEcCCCcEEEEEccCCeeE------EEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEE--eecCC
Q 036605 44 LLALGTSNGDILAVDVLTGEMK------WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIRE--FKASE 115 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~------~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~ 115 (340)
+||.+..+|.|.++|....... ..+. .|...|..+.|.|....|++++.|.++++||+.+++.... +.+|.
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~-aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~ 144 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPL-AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT 144 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccc-cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc
Confidence 7999999999999997654322 2334 4999999999999777899999999999999999988776 88999
Q ss_pred CCeeEEEEccCCCEEEE-ecCc--EEEEECCCCce---------------------------eEEeecCCCCeEE---EE
Q 036605 116 KPISSSAFLCEEKIFAL-ASSE--VRILSLENGEE---------------------------VLKFSDDVGPLQY---VS 162 (340)
Q Consensus 116 ~~i~~l~~~~~~~~l~~-~~~~--i~i~d~~~~~~---------------------------~~~~~~~~~~v~~---~~ 162 (340)
..+.+++|.|....+++ |+++ |.|||++-... +.....+...|.+ +.
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 99999999998876654 5555 99999864320 1112233344444 45
Q ss_pred ECCCCCEEEEEEcCCCeEEEEEccCCCC----CccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 163 ASDGAKIIITAGYGEKHLQVWRCDISSK----TVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 163 ~s~~~~~l~s~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
+..|...|++++..|+.|+|||++.... +......+. .+......+.+......|.+|++.+.|+.|++|++...
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~-t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYP-THSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccccccCCCcccCcc-CcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 5566778888888899999999974331 111111111 11111222222222566788988889999999999875
Q ss_pred Ccc
Q 036605 239 SQD 241 (340)
Q Consensus 239 ~~~ 241 (340)
..-
T Consensus 304 s~s 306 (720)
T KOG0321|consen 304 SIS 306 (720)
T ss_pred CcC
Confidence 443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=130.75 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=131.8
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe---------eEEEecCCCCCCeEEEEEecCCCEEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE---------MKWKSTGRHPGGLAGLAFAKKGRSLH 89 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~---------~~~~~~~~h~~~v~~v~~~~~~~~l~ 89 (340)
|...+|..+.|.++.. ..||+|+.|..|++|-+..+. .+..+.. |...|+++.|+|+|..|+
T Consensus 11 H~~~pv~s~dfq~n~~--------~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~-H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSL--------NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSR-HTRAVNVVRFSPDGELLA 81 (434)
T ss_pred cCCCceEEEEeccCcc--------cceecccCccceeeeeeeecCCCCCceeEEEeecccC-CcceeEEEEEcCCcCeee
Confidence 4557899999988763 179999999999999876532 2334555 999999999999999999
Q ss_pred EEeCCCcEEEEeCC--------C--------CeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEe
Q 036605 90 VVGTNGMASEMKSE--------M--------GEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKF 151 (340)
Q Consensus 90 s~~~dg~i~~wd~~--------~--------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~ 151 (340)
+|+++|.|.+|-.. + ......+.+|...++.++|+|++.+++++..+ +++||+..|..+..+
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence 99999999999765 2 12334466788999999999999999885544 999999999999999
Q ss_pred ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 152 SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 152 ~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
..|...+..++|.|.++|+++-+. |+..+++++
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~s~-dr~~~~~~~ 194 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASKSS-DRHPEGFSA 194 (434)
T ss_pred cccccccceeecchhhhhhhhhcc-Ccccceeee
Confidence 999999999999999999999877 887777776
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=133.40 Aligned_cols=200 Identities=12% Similarity=0.131 Sum_probs=153.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC--------CeeEEEecCCCCCCeEEEEEecCCCEEEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT--------GEMKWKSTGRHPGGLAGLAFAKKGRSLHV 90 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~--------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s 90 (340)
.|...++.++|+|... .|++++.||+|.+|+++. -+.+++|.+ |.++|.|++..+.+..+++
T Consensus 292 s~~d~ir~l~~~~sep---------~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ys 361 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEP---------VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYS 361 (577)
T ss_pred cchhhhhhhhcCCCCC---------eEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEe
Confidence 5778889999998887 899999999999999932 236778888 9999999999999999999
Q ss_pred EeCCCcEEEEeCCCC----------eEEEEeecCCCCeeEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeec-----
Q 036605 91 VGTNGMASEMKSEMG----------EVIREFKASEKPISSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSD----- 153 (340)
Q Consensus 91 ~~~dg~i~~wd~~~~----------~~~~~~~~~~~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~----- 153 (340)
|+-||.|+.|++... .....+.+|...++.+++|+....|+++ ++++++|+.....+ ..|..
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence 999999999965421 1234577899999999999988888775 77799998754433 11100
Q ss_pred -----------------------------------------------CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 154 -----------------------------------------------DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 154 -----------------------------------------------~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
....+..+...|.+...+++.. |+.|+++|.
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he-d~~Ir~~dn- 518 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE-DRSIRFFDN- 518 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc-CCceecccc-
Confidence 0023455666777777777666 999999998
Q ss_pred CCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 187 ISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.++..+.... .|...+..+ .+ .++|.+|++++.||.+++|.+...
T Consensus 519 -~~~~~l~s~~---a~~~svtsl--ai-~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 519 -KTGKILHSMV---AHKDSVTSL--AI-DPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred -cccccchhee---eccceecce--ee-cCCCceEEeecCCceeehhhccch
Confidence 5566555554 455444444 44 799999999999999999998653
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-15 Score=125.57 Aligned_cols=214 Identities=15% Similarity=0.125 Sum_probs=153.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-----------eE----
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-----------MK---- 65 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-----------~~---- 65 (340)
||+..+.+..++.. .|...|.||+.-.+|. |++|+.|..|..||-.-.+ .+
T Consensus 271 Iw~~~~~~~~k~~~----aH~ggv~~L~~lr~Gt----------llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 271 IWSKGTNRISKQVH----AHDGGVFSLCMLRDGT----------LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred EEeCCCceEEeEee----ecCCceEEEEEecCcc----------EeecCccceEEeccccccccccccCchhcCCeeEEe
Confidence 46665555554444 6899999999999999 6669999999999821000 00
Q ss_pred -------------------------EEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeE
Q 036605 66 -------------------------WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS 120 (340)
Q Consensus 66 -------------------------~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 120 (340)
....+ |......++.+|+..++++++.|+.+++|+ ..+++.... -..+..|
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~g-h~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~ 412 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQG-HGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAEC 412 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEe-cccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeE
Confidence 01123 777889999999999999999999999999 344443322 3567899
Q ss_pred EEEccCCCEEEEe--cCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCcee
Q 036605 121 SAFLCEEKIFALA--SSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPAL 198 (340)
Q Consensus 121 l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~ 198 (340)
+.|+|.| .++.+ .+...+.|.++...+..-.. ..+++.++|+|+|.+|+.++. |+.|+||.++. .+........
T Consensus 413 ~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~-d~~iyiy~Vs~-~g~~y~r~~k 488 (626)
T KOG2106|consen 413 ADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSH-DNHIYIYRVSA-NGRKYSRVGK 488 (626)
T ss_pred eeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecC-CCeEEEEEECC-CCcEEEEeee
Confidence 9999999 66664 44488899988655444344 889999999999999999776 99999999953 3332222221
Q ss_pred eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 036605 199 SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
.+...+..+ -| ++|++++.+-+.|-.|..|.-...++.
T Consensus 489 --~~gs~ithL--Dw-S~Ds~~~~~~S~d~eiLyW~~~~~~~~ 526 (626)
T KOG2106|consen 489 --CSGSPITHL--DW-SSDSQFLVSNSGDYEILYWKPSECKQI 526 (626)
T ss_pred --ecCceeEEe--ee-cCCCceEEeccCceEEEEEccccCccc
Confidence 111233333 45 899999999999999999944444433
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-15 Score=115.58 Aligned_cols=198 Identities=15% Similarity=0.152 Sum_probs=138.3
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC---------Ce-eEEEecCCCCCCeEEEEEecCCCEEEEEe
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT---------GE-MKWKSTGRHPGGLAGLAFAKKGRSLHVVG 92 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~---------~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 92 (340)
.|..-+|+|.++ +|++|..+|+|.++.+.. ++ .+...++ |.++|+.++|. ...|++|+
T Consensus 12 tvf~qa~sp~~~---------~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqa-hdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ---------YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQA-HDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce---------EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccc-cCCCeeeeeee--hhheeecc
Confidence 456678999999 999999999999998753 22 2333355 99999999998 45777765
Q ss_pred CCCcEEEEeCCCCeE------EEEee--c-----CCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCC
Q 036605 93 TNGMASEMKSEMGEV------IREFK--A-----SEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGP 157 (340)
Q Consensus 93 ~dg~i~~wd~~~~~~------~~~~~--~-----~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~ 157 (340)
||.|+-|..+.... +.+.. . .--.|+++.+.|....++.++++ ++.||+++|+..+.+++|...
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY 158 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Confidence 49999987653221 11110 1 11257889999887776665555 999999999999999999999
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCcee-------eecCCCeeeeeecCCCCCCCCEEEEEeCCCcE
Q 036605 158 LQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPAL-------SMRHSPVAIDCKNSPNGEDGTVILAVAESGVA 230 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i 230 (340)
+.++.--.....+++++. ||+++|||++ +++....+.. ......++..+ .-+..++++|+.- .+
T Consensus 159 vH~vv~R~~~~qilsG~E-DGtvRvWd~k--t~k~v~~ie~yk~~~~lRp~~g~wigal-----a~~edWlvCGgGp-~l 229 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAE-DGTVRVWDTK--TQKHVSMIEPYKNPNLLRPDWGKWIGAL-----AVNEDWLVCGGGP-KL 229 (325)
T ss_pred eeeeeecccCcceeecCC-CccEEEEecc--ccceeEEeccccChhhcCcccCceeEEE-----eccCceEEecCCC-ce
Confidence 999998566668999888 9999999994 3332222110 00112223333 3455677777655 49
Q ss_pred EEEECCCCCccC
Q 036605 231 YSWDLKTVSQDE 242 (340)
Q Consensus 231 ~vwd~~~~~~~~ 242 (340)
.+|.++..+...
T Consensus 230 slwhLrsse~t~ 241 (325)
T KOG0649|consen 230 SLWHLRSSESTC 241 (325)
T ss_pred eEEeccCCCceE
Confidence 999998865544
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=134.20 Aligned_cols=193 Identities=14% Similarity=0.220 Sum_probs=149.7
Q ss_pred ccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 036605 31 FVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIRE 110 (340)
Q Consensus 31 p~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~ 110 (340)
+.++..+++.+.+.|+.+++||.+.|.+ +.++....+.. |.+.|.+-.|+|||.-|++++.||.|++|. ++|.....
T Consensus 64 ~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~rVE~sv~A-H~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRSt 140 (737)
T KOG1524|consen 64 LGGRSSGGGKGSDTLLICSNDGRFVILN-KSARVERSISA-HAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRST 140 (737)
T ss_pred ccccccCCCCCcceEEEEcCCceEEEec-ccchhhhhhhh-hhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHH
Confidence 3344445566788999999999999988 45666666676 999999999999999999999999999998 45655555
Q ss_pred eecCCCCeeEEEEccCCCEE-EEecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCC
Q 036605 111 FKASEKPISSSAFLCEEKIF-ALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISS 189 (340)
Q Consensus 111 ~~~~~~~i~~l~~~~~~~~l-~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~ 189 (340)
+.....+|+|++|.|+...+ ++.++.+.|=.+.....+..++.|.+-|.++.|++.+..++++|. |-..+|||- .
T Consensus 141 l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE-D~kfKvWD~---~ 216 (737)
T KOG1524|consen 141 VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE-DFRFKIWDA---Q 216 (737)
T ss_pred HhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC-ceeEEeecc---c
Confidence 55667789999999987655 556666888888888788899999999999999999999999888 999999995 2
Q ss_pred CCccC--------C------------------ceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 190 KTVNK--------G------------------PALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 190 ~~~~~--------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
+..+. . ..+.-.....++.+ +| ++||..+++|+..|.+.+-
T Consensus 217 G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnl--sW-S~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 217 GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNL--SW-SADGTQATCGTSTGQLIVA 283 (737)
T ss_pred CcccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEE--EE-cCCCceeeccccCceEEEe
Confidence 22111 0 00111122334444 67 8999999999999987654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=137.54 Aligned_cols=204 Identities=13% Similarity=0.108 Sum_probs=148.4
Q ss_pred CCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCe-------eEEEecCCCCCCeEEEEEec-CCCEEEE
Q 036605 20 PVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGE-------MKWKSTGRHPGGLAGLAFAK-KGRSLHV 90 (340)
Q Consensus 20 ~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-------~~~~~~~~h~~~v~~v~~~~-~~~~l~s 90 (340)
....|+.++|.|-. . .||+++.||.|++|.+..+. ....+.. |...|+++.|+| -...|++
T Consensus 626 Ngt~vtDl~WdPFD~~---------rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~-h~eKI~slRfHPLAadvLa~ 695 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDE---------RLAVATDDGQINLWRLTANGLPENEMTPEKILTI-HGEKITSLRFHPLAADVLAV 695 (1012)
T ss_pred cCceeeecccCCCChH---------HeeecccCceEEEEEeccCCCCcccCCcceeeec-ccceEEEEEecchhhhHhhh
Confidence 44679999999977 5 69999999999999987653 3345566 999999999999 4558899
Q ss_pred EeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEe--cCcEEEEECCCCcee-EEeecCC-CCeEEEEECCC
Q 036605 91 VGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALA--SSEVRILSLENGEEV-LKFSDDV-GPLQYVSASDG 166 (340)
Q Consensus 91 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~-~~~~~~~-~~v~~~~~s~~ 166 (340)
++.|.+|++||+.+++....+.+|.+.|..++|+|+|+.+++. ++.|++|..++++.. +.=.+.. ..-..+.|.-+
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacd 775 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACD 775 (1012)
T ss_pred hhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEec
Confidence 9999999999999999999999999999999999999999884 555999998876432 2212111 23356788889
Q ss_pred CCEEEEEEcC---CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 167 AKIIITAGYG---EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 167 ~~~l~s~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
|+++++.|.. .+.|.+||...-....+....+... +... ...+....+..+++|-.|..|++|.+..
T Consensus 776 gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva--ps~L--vP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 776 GRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA--PSPL--VPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred CcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc--Cccc--cccccCCCceEEEecCCCceEEEEEecC
Confidence 9999988762 3678899863222222222222111 1111 1133234456778899999999998754
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-16 Score=132.64 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=114.3
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC--------------Ce--------------eEEEecCCC
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT--------------GE--------------MKWKSTGRH 72 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~--------------~~--------------~~~~~~~~h 72 (340)
...|+|+.|-|.+. ..++++-.+|.+++||... +. .+.++.- -
T Consensus 219 ktsvT~ikWvpg~~--------~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~-~ 289 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSD--------SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHI-G 289 (636)
T ss_pred ccceEEEEEEeCCC--------ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEe-c
Confidence 47899999999873 1677778899999997431 11 1111111 3
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEE
Q 036605 73 PGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLK 150 (340)
Q Consensus 73 ~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~ 150 (340)
.+.|+..+|+|||++|++.+.||.++|||..+.+++..++.--+...|++|+|||+++++++.+ |.||.+...+.+..
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 4589999999999999999999999999999988888887777889999999999999998888 99999999999999
Q ss_pred eecCCCCeEEEEECC
Q 036605 151 FSDDVGPLQYVSASD 165 (340)
Q Consensus 151 ~~~~~~~v~~~~~s~ 165 (340)
=.+|..+|..++|.|
T Consensus 370 GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 370 GQGHKSWVSVVAFDP 384 (636)
T ss_pred ccccccceeeEeecc
Confidence 999999999999987
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.8e-15 Score=118.95 Aligned_cols=185 Identities=14% Similarity=0.097 Sum_probs=142.6
Q ss_pred EEEEEcCC--CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEee---cCCCCe
Q 036605 44 LLALGTSN--GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK---ASEKPI 118 (340)
Q Consensus 44 ~l~~g~~d--g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~i 118 (340)
++|..+.+ ..+++++++.+..++.+. .+..|.+|.++ .+.|+++=.+ .|++||+.+-+.++++. .+...+
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGL 132 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccce
Confidence 66665544 348999999888888877 56689999997 4566666555 59999999999888764 345567
Q ss_pred eEEEEccCCCEEEE----ecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccC
Q 036605 119 SSSAFLCEEKIFAL----ASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNK 194 (340)
Q Consensus 119 ~~l~~~~~~~~l~~----~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~ 194 (340)
.++.+++.+.+++. ..++|.+||+.+-+.+..+..|.+.+.+++|+++|.+|++++...-.|+||.+ ..++...
T Consensus 133 ~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v--~~G~kl~ 210 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSV--PEGQKLY 210 (391)
T ss_pred EeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEc--CCccEee
Confidence 77777777889987 33459999999999999999999999999999999999998885556899999 5665544
Q ss_pred CceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 195 GPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
.+.-... ...+..+ +| ++++.+|.+.+..++|++|.+....
T Consensus 211 eFRRG~~-~~~IySL--~F-s~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 211 EFRRGTY-PVSIYSL--SF-SPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeeCCce-eeEEEEE--EE-CCCCCeEEEecCCCeEEEEEecccc
Confidence 3331111 2233334 66 8999999999999999999987633
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-15 Score=117.54 Aligned_cols=202 Identities=10% Similarity=0.054 Sum_probs=148.1
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee-EEEec----CCCCCCeEEEEEec--CCCEEEEEeC
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM-KWKST----GRHPGGLAGLAFAK--KGRSLHVVGT 93 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~----~~h~~~v~~v~~~~--~~~~l~s~~~ 93 (340)
-+.+.|+.|.|++. -+++-. |..|.+|++..+.. ...+. ..|....++-+|+| +++.+++ ..
T Consensus 123 vg~i~cvew~Pns~---------klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~ 191 (370)
T KOG1007|consen 123 VGKINCVEWEPNSD---------KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TS 191 (370)
T ss_pred hCceeeEEEcCCCC---------eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eC
Confidence 35899999999986 466554 88999999988764 33332 23566788889998 6677776 56
Q ss_pred CCcEEEEeCCCCeEEEEee-cCCCCeeEEEEccCCCEE-EEecCc--EEEEECCCC-ceeEEeecCCCCeEEEEECCCCC
Q 036605 94 NGMASEMKSEMGEVIREFK-ASEKPISSSAFLCEEKIF-ALASSE--VRILSLENG-EEVLKFSDDVGPLQYVSASDGAK 168 (340)
Q Consensus 94 dg~i~~wd~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l-~~~~~~--i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~ 168 (340)
|+++..||+++......+. +|...+..+.|+|+.+++ ++++.+ |++||.+.. .++..+.+|...|.++.|+|...
T Consensus 192 d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 192 DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD 271 (370)
T ss_pred CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc
Confidence 8899999999876655543 577789999999997765 555554 999999864 46688899999999999998754
Q ss_pred -EEEEEEcCCCeEEEEEccCCCCCcc-------------------C-----CceeeecCCCeeeeeecCCCCCCCCEEEE
Q 036605 169 -IIITAGYGEKHLQVWRCDISSKTVN-------------------K-----GPALSMRHSPVAIDCKNSPNGEDGTVILA 223 (340)
Q Consensus 169 -~l~s~~~~d~~i~iwd~~~~~~~~~-------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 223 (340)
.|+++++ |..|.+|-....+.+.. . .+...-.|...+..+ .|.+.+.-.+++
T Consensus 272 qLiLs~~S-Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~--aWSsadPWiFAS 348 (370)
T KOG1007|consen 272 QLILSGGS-DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL--AWSSADPWIFAS 348 (370)
T ss_pred eEEEecCC-CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE--eeccCCCeeEEE
Confidence 5566555 99999997632211100 0 111122577778777 887888889999
Q ss_pred EeCCCcEEEEECC
Q 036605 224 VAESGVAYSWDLK 236 (340)
Q Consensus 224 ~s~dg~i~vwd~~ 236 (340)
-+.||++.|=.+.
T Consensus 349 LSYDGRviIs~V~ 361 (370)
T KOG1007|consen 349 LSYDGRVIISSVP 361 (370)
T ss_pred eccCceEEeecCC
Confidence 9999999887654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-16 Score=128.36 Aligned_cols=194 Identities=15% Similarity=0.177 Sum_probs=141.6
Q ss_pred EEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 036605 25 SCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEM 104 (340)
Q Consensus 25 ~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~ 104 (340)
.+++|+++|. .|++|+.||+++||+......+..... |.+.|.++.|+|||+.|++.+.| ..+||+.++
T Consensus 148 k~vaf~~~gs---------~latgg~dg~lRv~~~Ps~~t~l~e~~-~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 148 KVVAFNGDGS---------KLATGGTDGTLRVWEWPSMLTILEEIA-HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred eEEEEcCCCC---------EeeeccccceEEEEecCcchhhhhhHh-hcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 7899999998 899999999999999877766656666 88999999999999999999999 999999999
Q ss_pred CeEEEEeec--CCCCeeEEEEccCC---CEE-EE-e--cCcEEEEECCCCc-----eeEEeecCCCCeEEEEECCCCCEE
Q 036605 105 GEVIREFKA--SEKPISSSAFLCEE---KIF-AL-A--SSEVRILSLENGE-----EVLKFSDDVGPLQYVSASDGAKII 170 (340)
Q Consensus 105 ~~~~~~~~~--~~~~i~~l~~~~~~---~~l-~~-~--~~~i~i~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l 170 (340)
|..+..... .......+.|+.|+ .+. ++ . .+.|..||+.... ..++.......|++++.+++|+++
T Consensus 217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFL 296 (398)
T ss_pred CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEE
Confidence 966655442 22235566777665 222 22 1 1115555543221 112222334579999999999999
Q ss_pred EEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 171 ITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 171 ~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
+.++. ||.|.|++. .+-+ ........|...+..+ .| +|+..++++.+.|..+.|..+..
T Consensus 297 AlGT~-dGsVai~~~--~~lq--~~~~vk~aH~~~VT~l--tF-~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 297 ALGTM-DGSVAIYDA--KSLQ--RLQYVKEAHLGFVTGL--TF-SPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEecc-CCcEEEEEe--ceee--eeEeehhhheeeeeeE--EE-cCCcCcccccccCCceeEEEEee
Confidence 99877 999999997 2322 2222233566666666 66 89999999999999999988765
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-15 Score=132.08 Aligned_cols=203 Identities=12% Similarity=0.120 Sum_probs=130.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCC---CcEEEEEccCCeeEEEecCCCCCCeE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSN---GDILAVDVLTGEMKWKSTGRHPGGLA 77 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~h~~~v~ 77 (340)
|||...+. ...+. .+...+...+|||||+ .|+..+.+ ..|++||+.+++... +.. ..+...
T Consensus 188 i~d~dg~~-~~~lt----~~~~~v~~p~wSPDG~---------~la~~s~~~~~~~i~i~dl~tg~~~~-l~~-~~g~~~ 251 (429)
T PRK01742 188 VADYDGFN-QFIVN----RSSQPLMSPAWSPDGS---------KLAYVSFENKKSQLVVHDLRSGARKV-VAS-FRGHNG 251 (429)
T ss_pred EECCCCCC-ceEec----cCCCccccceEcCCCC---------EEEEEEecCCCcEEEEEeCCCCceEE-Eec-CCCccC
Confidence 35554333 33444 4667899999999998 77776543 469999998876322 222 223345
Q ss_pred EEEEecCCCEEEEEe-CCCcEE--EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEe-c--CcEEEEEC--CCCceeE
Q 036605 78 GLAFAKKGRSLHVVG-TNGMAS--EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALA-S--SEVRILSL--ENGEEVL 149 (340)
Q Consensus 78 ~v~~~~~~~~l~s~~-~dg~i~--~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~--~~i~i~d~--~~~~~~~ 149 (340)
.++|+|||+.|+.++ .+|.+. +||+.++.. ..+..+...+..+.|+|||+.++.. + +...||++ ..+.. .
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~ 329 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-S 329 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-E
Confidence 789999999888764 577654 557766654 4555566678899999999987653 2 33555554 33322 2
Q ss_pred EeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCc
Q 036605 150 KFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGV 229 (340)
Q Consensus 150 ~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~ 229 (340)
.+ .+.. ....|+|+|++|+..+. ++ +.+||+ .++.... +. ...... ...| +|+|.+|+.++.+|.
T Consensus 330 ~l-~~~~--~~~~~SpDG~~ia~~~~-~~-i~~~Dl--~~g~~~~-lt--~~~~~~----~~~~-sPdG~~i~~~s~~g~ 394 (429)
T PRK01742 330 LV-GGRG--YSAQISADGKTLVMING-DN-VVKQDL--TSGSTEV-LS--STFLDE----SPSI-SPNGIMIIYSSTQGL 394 (429)
T ss_pred Ee-cCCC--CCccCCCCCCEEEEEcC-CC-EEEEEC--CCCCeEE-ec--CCCCCC----CceE-CCCCCEEEEEEcCCC
Confidence 22 3333 45789999999988665 54 556887 3433211 11 011111 1244 899999999999998
Q ss_pred EEEEECC
Q 036605 230 AYSWDLK 236 (340)
Q Consensus 230 i~vwd~~ 236 (340)
+.+|.+.
T Consensus 395 ~~~l~~~ 401 (429)
T PRK01742 395 GKVLQLV 401 (429)
T ss_pred ceEEEEE
Confidence 8888764
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-14 Score=124.13 Aligned_cols=217 Identities=22% Similarity=0.366 Sum_probs=162.6
Q ss_pred CccCCC-CceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcC-CCcEEEEEccCCeeEEEecCCCCCCeEE
Q 036605 1 IWSTND-GSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTS-NGDILAVDVLTGEMKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~-g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~h~~~v~~ 78 (340)
+||... +.....+. .|...|.+++|+|+++ ++++++. ++.+.+|++..+.....+.+ |...|.+
T Consensus 138 ~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 203 (466)
T COG2319 138 LWDLSTPGKLIRTLE----GHSESVTSLAFSPDGK---------LLASGSSLDGTIKLWDLRTGKPLSTLAG-HTDPVSS 203 (466)
T ss_pred EEEecCCCeEEEEEe----cCcccEEEEEECCCCC---------EEEecCCCCCceEEEEcCCCceEEeecc-CCCceEE
Confidence 366665 55555665 7889999999999998 7888885 99999999998888888888 9999999
Q ss_pred EEEecCCC-EEEEEeCCCcEEEEeCCCCeEEE-EeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCce-eEEeec
Q 036605 79 LAFAKKGR-SLHVVGTNGMASEMKSEMGEVIR-EFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEE-VLKFSD 153 (340)
Q Consensus 79 v~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~-~~~~~~ 153 (340)
++|+|++. .+++++.|+.|.+||...+.... .+..|.... ...|+|++..+++++.+ +++|++..... +..+..
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 282 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec
Confidence 99999998 55555899999999998888777 577777664 34899999777664444 99999987665 444467
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEE-eCCCcEEE
Q 036605 154 DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAV-AESGVAYS 232 (340)
Q Consensus 154 ~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-s~dg~i~v 232 (340)
|...+.++.|.|++..+++++. |+.+.+|++. ......... ...|...+..+ .+ .+++..++.+ ..|+.+.+
T Consensus 283 ~~~~v~~~~~~~~~~~~~~~~~-d~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~~~~~~d~~~~~ 355 (466)
T COG2319 283 HSSSVLSVAFSPDGKLLASGSS-DGTVRLWDLE--TGKLLSSLT-LKGHEGPVSSL--SF-SPDGSLLVSGGSDDGTIRL 355 (466)
T ss_pred CCccEEEEEECCCCCEEEEeeC-CCcEEEEEcC--CCceEEEee-ecccCCceEEE--EE-CCCCCEEEEeecCCCcEEe
Confidence 8899999999998889998666 7889999873 322211111 12344334444 22 2344555555 68899999
Q ss_pred EECCCCC
Q 036605 233 WDLKTVS 239 (340)
Q Consensus 233 wd~~~~~ 239 (340)
|++....
T Consensus 356 ~~~~~~~ 362 (466)
T COG2319 356 WDLRTGK 362 (466)
T ss_pred eecCCCc
Confidence 9988765
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-14 Score=120.79 Aligned_cols=197 Identities=10% Similarity=0.063 Sum_probs=130.5
Q ss_pred CeEEEEeeccccccccccCceEEEEEc-CCCcEEEEEccC-Ce---eEEEecCCCCCCeEEEEEecCCCEEEEEe-CCCc
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGT-SNGDILAVDVLT-GE---MKWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNGM 96 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~-~dg~i~i~d~~~-~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~ 96 (340)
....++|+|+++ +|++++ .++.|.+|++.+ +. ....+. +.....+++++|+++++++++ .++.
T Consensus 81 ~p~~i~~~~~g~---------~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~ 149 (330)
T PRK11028 81 SPTHISTDHQGR---------FLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDR 149 (330)
T ss_pred CceEEEECCCCC---------EEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCE
Confidence 456899999998 677665 488999999964 32 222222 333567789999999987665 4589
Q ss_pred EEEEeCCCCeEEE-------EeecCCCCeeEEEEccCCCEEEEe---cCcEEEEECCC--Cc--eeEEeecCC------C
Q 036605 97 ASEMKSEMGEVIR-------EFKASEKPISSSAFLCEEKIFALA---SSEVRILSLEN--GE--EVLKFSDDV------G 156 (340)
Q Consensus 97 i~~wd~~~~~~~~-------~~~~~~~~i~~l~~~~~~~~l~~~---~~~i~i~d~~~--~~--~~~~~~~~~------~ 156 (340)
|.+||+.+...+. ... .......++|+|++++++++ ++.|.+|++.. ++ .+..+..++ .
T Consensus 150 v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~ 228 (330)
T PRK11028 150 IRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR 228 (330)
T ss_pred EEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc
Confidence 9999997633221 111 12345789999999999774 44599999873 32 233332221 2
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeC-CCcEEEEEC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAE-SGVAYSWDL 235 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~-dg~i~vwd~ 235 (340)
....+.|+|++++++++...++.|.+|+++.........-....+..+..+.+ +++|.+|+++.. ++.|.+|++
T Consensus 229 ~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~-----~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 229 WAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNI-----DHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEE-----CCCCCEEEEEEccCCcEEEEEE
Confidence 23468899999999998766899999999532221111111111223333444 899999998776 889999987
Q ss_pred C
Q 036605 236 K 236 (340)
Q Consensus 236 ~ 236 (340)
.
T Consensus 304 ~ 304 (330)
T PRK11028 304 D 304 (330)
T ss_pred c
Confidence 5
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-14 Score=124.95 Aligned_cols=197 Identities=13% Similarity=0.113 Sum_probs=133.7
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcC---CCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEE-EEeCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTS---NGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLH-VVGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d 94 (340)
.+...+.+.+|+|||+ .|+..+. +..|++||+.+++.. .+.. +.+.+...+|+|||+.|+ +.+.+
T Consensus 199 ~~~~~v~~p~wSpDG~---------~lay~s~~~g~~~i~~~dl~~g~~~-~l~~-~~g~~~~~~~SPDG~~la~~~~~~ 267 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQ---------EITYMSYANGRPRVYLLDLETGQRE-LVGN-FPGMTFAPRFSPDGRKVVMSLSQG 267 (435)
T ss_pred cCCCCeEeeEECCCCC---------EEEEEEecCCCCEEEEEECCCCcEE-Eeec-CCCcccCcEECCCCCEEEEEEecC
Confidence 5667899999999998 6776553 468999999888643 4554 667788999999999775 45555
Q ss_pred C--cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec-C----cEEEEECCCCceeEEeecCCCCeEEEEECCCC
Q 036605 95 G--MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS-S----EVRILSLENGEEVLKFSDDVGPLQYVSASDGA 167 (340)
Q Consensus 95 g--~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 167 (340)
+ .|.+||+.++.. ..+..+........|+|||+.++..+ + +|+++|+.++.. ..+..+...+....|+|+|
T Consensus 268 g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG 345 (435)
T PRK05137 268 GNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRG 345 (435)
T ss_pred CCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCC
Confidence 5 488889988765 44555555667889999999886633 2 399999877643 4454445556778999999
Q ss_pred CEEEEEEcCCC--eEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCC------CcEEEEECCCC
Q 036605 168 KIIITAGYGEK--HLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAES------GVAYSWDLKTV 238 (340)
Q Consensus 168 ~~l~s~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d------g~i~vwd~~~~ 238 (340)
++|+......+ .|.+||+ ..+.. ..+. ... .... ..| +|||..|+..+.+ ..++++++...
T Consensus 346 ~~ia~~~~~~~~~~i~~~d~--~~~~~-~~lt--~~~--~~~~--p~~-spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 346 DLIAFTKQGGGQFSIGVMKP--DGSGE-RILT--SGF--LVEG--PTW-APNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CEEEEEEcCCCceEEEEEEC--CCCce-Eecc--CCC--CCCC--CeE-CCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 99988665333 5677776 33221 1111 111 1111 244 8999988776543 25777777553
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-15 Score=121.81 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=129.5
Q ss_pred CCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 19 EPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
+|...|--++|+|.. . .|++++.|.+|.+||+.+|+.+..+. |++.|++++|+.||.+|++.+.|..|
T Consensus 129 gH~rrVg~V~wHPtA~N---------VLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkv 197 (472)
T KOG0303|consen 129 GHQRRVGLVQWHPTAPN---------VLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKV 197 (472)
T ss_pred ecceeEEEEeecccchh---------hHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeeccccee
Confidence 899999999999987 5 89999999999999999999887777 99999999999999999999999999
Q ss_pred EEEeCCCCeEEEEeecCCC-CeeEEEEccCCCEEEEe-----cCcEEEEECCCCcee---EEeecCCCCeEEEEECCCCC
Q 036605 98 SEMKSEMGEVIREFKASEK-PISSSAFLCEEKIFALA-----SSEVRILSLENGEEV---LKFSDDVGPLQYVSASDGAK 168 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~-~i~~l~~~~~~~~l~~~-----~~~i~i~d~~~~~~~---~~~~~~~~~v~~~~~s~~~~ 168 (340)
++||.++++.+..-.+|.+ ....+.|-.++.++.++ .+++-+||....+.. ..+. ..+.|.---|.+|..
T Consensus 198 Rv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ 276 (472)
T KOG0303|consen 198 RVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTS 276 (472)
T ss_pred EEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCC
Confidence 9999999999988777765 34556677888855442 334999997654433 3333 345677777899999
Q ss_pred EEEEEEcCCCeEEEEEc
Q 036605 169 IIITAGYGEKHLQVWRC 185 (340)
Q Consensus 169 ~l~s~~~~d~~i~iwd~ 185 (340)
.++.+|.+|+.|+.|.+
T Consensus 277 ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 277 IVYLCGKGDSSIRYFEI 293 (472)
T ss_pred EEEEEecCCcceEEEEe
Confidence 99999999999999998
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.6e-15 Score=115.17 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=125.5
Q ss_pred CCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCe---eEEEecCCCCCCeEEEEEecCCC-EEEEEe
Q 036605 18 GEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGE---MKWKSTGRHPGGLAGLAFAKKGR-SLHVVG 92 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~ 92 (340)
+++..++++..|..-. + ++.+.+-|-+..|||++++. ....+.. |...|..++|...+. .++++|
T Consensus 147 s~~~aPlTSFDWne~dp~---------~igtSSiDTTCTiWdie~~~~~~vkTQLIA-HDKEV~DIaf~~~s~~~FASvg 216 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPN---------LIGTSSIDTTCTIWDIETGVSGTVKTQLIA-HDKEVYDIAFLKGSRDVFASVG 216 (364)
T ss_pred cccCCcccccccccCCcc---------eeEeecccCeEEEEEEeeccccceeeEEEe-cCcceeEEEeccCccceEEEec
Confidence 3667889999998665 6 89999999999999999873 3455666 999999999998554 788999
Q ss_pred CCCcEEEEeCCCCeEEEEeecC---CCCeeEEEEccCC-CEEEE---ecCcEEEEECCCC-ceeEEeecCCCCeEEEEEC
Q 036605 93 TNGMASEMKSEMGEVIREFKAS---EKPISSSAFLCEE-KIFAL---ASSEVRILSLENG-EEVLKFSDDVGPLQYVSAS 164 (340)
Q Consensus 93 ~dg~i~~wd~~~~~~~~~~~~~---~~~i~~l~~~~~~-~~l~~---~~~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s 164 (340)
.||.|++||++..+.-..+... ..+...++|++.. +++|+ .+..|.|.|++.. .++..+.+|.+.|+.++|.
T Consensus 217 aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWa 296 (364)
T KOG0290|consen 217 ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWA 296 (364)
T ss_pred CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEec
Confidence 9999999999987654443322 4567788898765 45555 3444999999875 4568899999999999999
Q ss_pred CCCC-EEEEEEcCCCeEEEEEccC
Q 036605 165 DGAK-IIITAGYGEKHLQVWRCDI 187 (340)
Q Consensus 165 ~~~~-~l~s~~~~d~~i~iwd~~~ 187 (340)
|... .|.++|. |..+.|||+..
T Consensus 297 PhS~~hictaGD-D~qaliWDl~q 319 (364)
T KOG0290|consen 297 PHSSSHICTAGD-DCQALIWDLQQ 319 (364)
T ss_pred CCCCceeeecCC-cceEEEEeccc
Confidence 8754 5666666 99999999953
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-14 Score=113.97 Aligned_cols=211 Identities=15% Similarity=0.096 Sum_probs=152.8
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC--CeeE--EEe----cCCCCCCeEEEEEec-CCCEE
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT--GEMK--WKS----TGRHPGGLAGLAFAK-KGRSL 88 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~--~~~~--~~~----~~~h~~~v~~v~~~~-~~~~l 88 (340)
..|..+++.+.|.|+..... .++||+. +..+++|.+.. .+.. ..+ ...+.+++++..|+. +-+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~----pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~i 166 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVY----PDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLI 166 (364)
T ss_pred CCCCCCccceEecCCccccC----cchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCccee
Confidence 46889999999999874111 1256554 44699998773 2211 111 113678999999986 66789
Q ss_pred EEEeCCCcEEEEeCCCCe---EEEEeecCCCCeeEEEEccCCCEE-EE--ecCcEEEEECCCCceeEEe---ecCCCCeE
Q 036605 89 HVVGTNGMASEMKSEMGE---VIREFKASEKPISSSAFLCEEKIF-AL--ASSEVRILSLENGEEVLKF---SDDVGPLQ 159 (340)
Q Consensus 89 ~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~i~~l~~~~~~~~l-~~--~~~~i~i~d~~~~~~~~~~---~~~~~~v~ 159 (340)
.+++-|.++.+||++++. +...+-+|...|+.++|...+.-+ ++ ++|.+++||++..+.-..+ .....+..
T Consensus 167 gtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 167 GTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred EeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence 999999999999999873 356688999999999999977544 44 6677999999876543222 22246777
Q ss_pred EEEECCCC-CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 160 YVSASDGA-KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 160 ~~~~s~~~-~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.++|++.. +|+++-+.+...|.|-|+|.. ......+. .|...+..+ .|.......+++++.|..+.+||+...
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P-~tpva~L~---~H~a~VNgI--aWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVP-CTPVARLR---NHQASVNGI--AWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCC-Ccceehhh---cCcccccce--EecCCCCceeeecCCcceEEEEecccc
Confidence 88887654 566666665678999999743 33334444 788888877 775566788999999999999999875
Q ss_pred Cc
Q 036605 239 SQ 240 (340)
Q Consensus 239 ~~ 240 (340)
-.
T Consensus 321 ~~ 322 (364)
T KOG0290|consen 321 PR 322 (364)
T ss_pred cc
Confidence 44
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-14 Score=120.74 Aligned_cols=202 Identities=12% Similarity=0.143 Sum_probs=132.3
Q ss_pred CCeEEEEeeccccccccccCceEEEEE-cCCCcEEEEEcc-CCee--EEEecCCCCCCeEEEEEecCCCEEEEEeC-CCc
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALG-TSNGDILAVDVL-TGEM--KWKSTGRHPGGLAGLAFAKKGRSLHVVGT-NGM 96 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g-~~dg~i~i~d~~-~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~ 96 (340)
.....++++|+++ +|+++ ..++.|.+|++. ++.. ..... ..+....++|+|+++.|++++. ++.
T Consensus 35 ~~~~~l~~spd~~---------~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 35 GQVQPMVISPDKR---------HLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred CCCccEEECCCCC---------EEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcCCCe
Confidence 5567899999998 77665 458899999986 3432 22222 3345678999999999998874 789
Q ss_pred EEEEeCCC-Ce---EEEEeecCCCCeeEEEEccCCCEEEEe---cCcEEEEECCCCceeEE-----ee-cCCCCeEEEEE
Q 036605 97 ASEMKSEM-GE---VIREFKASEKPISSSAFLCEEKIFALA---SSEVRILSLENGEEVLK-----FS-DDVGPLQYVSA 163 (340)
Q Consensus 97 i~~wd~~~-~~---~~~~~~~~~~~i~~l~~~~~~~~l~~~---~~~i~i~d~~~~~~~~~-----~~-~~~~~v~~~~~ 163 (340)
|.+|++.+ +. .+..+. +.....+++++|++++++++ ++.|.+||+.+...+.. .. ........+.|
T Consensus 104 v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~ 182 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF 182 (330)
T ss_pred EEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence 99999864 22 222222 22346788999999998663 34499999976432211 11 11234578999
Q ss_pred CCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeee-----cCCCeeeeeecCCCCCCCCEEEEEeC-CCcEEEEECCC
Q 036605 164 SDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSM-----RHSPVAIDCKNSPNGEDGTVILAVAE-SGVAYSWDLKT 237 (340)
Q Consensus 164 s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~s~-dg~i~vwd~~~ 237 (340)
+|++++++++...++.|.+|+++..++.......+.. ..+.....+ .+ +|++.+++++.. ++.|.+|++..
T Consensus 183 ~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i--~~-~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 183 HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI--HI-TPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE--EE-CCCCCEEEEecCCCCeEEEEEEeC
Confidence 9999999998777999999999522222111111100 011111111 23 799999988854 68899999865
Q ss_pred C
Q 036605 238 V 238 (340)
Q Consensus 238 ~ 238 (340)
.
T Consensus 260 ~ 260 (330)
T PRK11028 260 D 260 (330)
T ss_pred C
Confidence 3
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-14 Score=116.87 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=92.0
Q ss_pred eeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc--------C-----C---eeEEEecCCCCCCe
Q 036605 13 WKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL--------T-----G---EMKWKSTGRHPGGL 76 (340)
Q Consensus 13 ~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~--------~-----~---~~~~~~~~~h~~~v 76 (340)
|....++|...|+++.|+|+|. +||+|+.+|.|.+|-.. + . .....+.+ |...|
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~ge---------lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~di 126 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGE---------LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDI 126 (434)
T ss_pred EeecccCCcceeEEEEEcCCcC---------eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccch
Confidence 3333359999999999999999 99999999999999765 2 1 12334455 99999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE
Q 036605 77 AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 132 (340)
..++|+|++..+++++-|..+++||+..|.....+..|...+..++|.|-++++++
T Consensus 127 ydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s 182 (434)
T KOG1009|consen 127 YDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVAS 182 (434)
T ss_pred hhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhh
Confidence 99999999999999999999999999999988888888888888888877776655
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-14 Score=111.96 Aligned_cols=147 Identities=14% Similarity=0.225 Sum_probs=107.1
Q ss_pred EEEEeeccccccccccCceEEEEEcC----------CCcEEEEEccCC-eeEEEecCCCCCCeEEEEEecCCCEEEEE--
Q 036605 25 SCLACGFVGKKRRKERGTLLLALGTS----------NGDILAVDVLTG-EMKWKSTGRHPGGLAGLAFAKKGRSLHVV-- 91 (340)
Q Consensus 25 ~~l~~sp~~~~~~~~~~~~~l~~g~~----------dg~i~i~d~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-- 91 (340)
-.+.|+|+|. +|++-.. -|...+|.+... .....+.-...++|.+++|+|+|+.++++
T Consensus 9 ~~~~W~~~G~---------~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 9 AKLHWQPSGD---------YLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred EEEEecccCC---------EEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEc
Confidence 3588999996 4554322 134555555322 23333332245679999999999987655
Q ss_pred eCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec-----CcEEEEECCCCceeEEeecCCCCeEEEEECCC
Q 036605 92 GTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS-----SEVRILSLENGEEVLKFSDDVGPLQYVSASDG 166 (340)
Q Consensus 92 ~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 166 (340)
..+..|.+||++ ++.+..+. ...+..+.|+|+|+++++++ ++|.+||.++.+.+..+. | ..+..++|+|+
T Consensus 80 ~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPd 154 (194)
T PF08662_consen 80 SMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPD 154 (194)
T ss_pred cCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCC
Confidence 356799999997 66666654 56778999999999998864 349999999888776664 2 35789999999
Q ss_pred CCEEEEEEcC-----CCeEEEEEc
Q 036605 167 AKIIITAGYG-----EKHLQVWRC 185 (340)
Q Consensus 167 ~~~l~s~~~~-----d~~i~iwd~ 185 (340)
|++|+++... |+.++||++
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEe
Confidence 9999998763 788999998
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=128.12 Aligned_cols=212 Identities=14% Similarity=0.178 Sum_probs=148.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEec--CCCEEEEEeCCCc
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAK--KGRSLHVVGTNGM 96 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~dg~ 96 (340)
+|.+.|.||+|+.+|. +|++|+.|-.+.|||....+.++.+..+|.+.|.++.|-| ..+.+++|+.|..
T Consensus 48 GH~GCVN~LeWn~dG~---------lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGE---------LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred cccceecceeecCCCC---------EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 8999999999999999 9999999999999999988888888777999999999998 4568999999999
Q ss_pred EEEEeCCCC----------eEEEEeecCCCCeeEEEEccCCCE-EEE--ecCcEEEEECCCCcee----------EEeec
Q 036605 97 ASEMKSEMG----------EVIREFKASEKPISSSAFLCEEKI-FAL--ASSEVRILSLENGEEV----------LKFSD 153 (340)
Q Consensus 97 i~~wd~~~~----------~~~~~~~~~~~~i~~l~~~~~~~~-l~~--~~~~i~i~d~~~~~~~----------~~~~~ 153 (340)
|+++|+... .....+..|...|..|+..|++.. +.+ -++.|+-||++....- ..+..
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 999999852 233446778888999999999844 333 5566999999763211 11111
Q ss_pred CCCCeEEEEECCCCCE-EEEEEcCCCeEEEEEccCCCCCc------cC--------CceeeecCC---C-----eeeeee
Q 036605 154 DVGPLQYVSASDGAKI-IITAGYGEKHLQVWRCDISSKTV------NK--------GPALSMRHS---P-----VAIDCK 210 (340)
Q Consensus 154 ~~~~v~~~~~s~~~~~-l~s~~~~d~~i~iwd~~~~~~~~------~~--------~~~~~~~~~---~-----~~~~~~ 210 (340)
..-...++.++|...+ |+.|+. |-..++||.+...+.. .. ..-+.-+|. . .+..+.
T Consensus 199 ~lielk~ltisp~rp~~laVGgs-dpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGS-DPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred hhheeeeeeecCCCCceEEecCC-CchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence 2234567888887665 555555 9999999954221110 00 000111111 0 011111
Q ss_pred -cCCCCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 036605 211 -NSPNGEDGTVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 211 -~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
..| +|+|.-|+..-....|++||+...+..
T Consensus 278 ~vtf-npNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 278 YVTF-NPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EEEE-CCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 123 788887777666667999999875543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-13 Score=121.74 Aligned_cols=194 Identities=13% Similarity=0.157 Sum_probs=129.6
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEc---CCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEE-eCCC
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGT---SNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVV-GTNG 95 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~dg 95 (340)
+...+.+.+|||||+ .|+..+ .+..|++|++.+++.. .+.. ..+.+..++|+|||+.|+.. +.+|
T Consensus 197 ~~~~~~~p~wSPDG~---------~la~~s~~~g~~~i~i~dl~~G~~~-~l~~-~~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 197 SPQPLMSPAWSPDGS---------KLAYVTFESGRSALVIQTLANGAVR-QVAS-FPRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred CCCceeeeEEcCCCC---------EEEEEEecCCCcEEEEEECCCCCeE-EccC-CCCCcCCeEECCCCCEEEEEEcCCC
Confidence 456789999999997 676543 3457999999888643 3332 34445678999999988765 4444
Q ss_pred --cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ecC----cEEEEECCCCceeEEeecCCCCeEEEEECCCCC
Q 036605 96 --MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-ASS----EVRILSLENGEEVLKFSDDVGPLQYVSASDGAK 168 (340)
Q Consensus 96 --~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 168 (340)
.|.+||+.+++... +..+...+....|+|||+.++. .+. .|+++|+.+++. ..+..+........|+|||+
T Consensus 266 ~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 266 SLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGK 343 (429)
T ss_pred CcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCC
Confidence 58999999887544 4444456788999999998865 322 277778877643 34444444556789999999
Q ss_pred EEEEEEcCC--CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCc---EEEEECC
Q 036605 169 IIITAGYGE--KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGV---AYSWDLK 236 (340)
Q Consensus 169 ~l~s~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~---i~vwd~~ 236 (340)
+|+..+..+ ..|.+||+ .+++.. .+. ..... ....| +|||..|+.++.++. ++++++.
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl--~~g~~~-~Lt--~~~~~----~~p~~-SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDL--ATGGVQ-VLT--DTFLD----ETPSI-APNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEEEEEccCCCceEEEEEC--CCCCeE-EeC--CCCCC----CCceE-CCCCCEEEEEEcCCCceEEEEEECC
Confidence 998866533 35777787 344321 111 11111 11245 899999999998865 5666664
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-13 Score=123.26 Aligned_cols=196 Identities=16% Similarity=0.118 Sum_probs=131.0
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCC---CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEE-EEeCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSN---GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLH-VVGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d 94 (340)
.+...+.+.+|+||++ .|+..+.+ ..|++||+.+++.. .+.. +.+...+++|+|||+.|+ +.+.+
T Consensus 201 ~~~~~v~~p~wSpDg~---------~la~~s~~~~~~~l~~~dl~~g~~~-~l~~-~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 201 RSAEPILSPAWSPDGK---------KLAYVSFERGRSAIYVQDLATGQRE-LVAS-FRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred cCCCccccccCCCCCC---------EEEEEecCCCCcEEEEEECCCCCEE-Eecc-CCCCccCceECCCCCEEEEEEeCC
Confidence 4556789999999998 77776533 46999999888643 3433 455566889999999775 44555
Q ss_pred C--cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec-C----cEEEEECCCCceeEEeecCCCCeEEEEECCCC
Q 036605 95 G--MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS-S----EVRILSLENGEEVLKFSDDVGPLQYVSASDGA 167 (340)
Q Consensus 95 g--~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 167 (340)
| .|++||+.+++.. .+..+......++|+|||+.++..+ . +|+++|+.+++. ..+..+......++|+|+|
T Consensus 270 g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG 347 (433)
T PRK04922 270 GNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNARASVSPDG 347 (433)
T ss_pred CCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCC
Confidence 5 5999999988753 4555554556789999999887633 2 288888877653 3333333445578999999
Q ss_pred CEEEEEEcCCC--eEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCC---CcEEEEECCC
Q 036605 168 KIIITAGYGEK--HLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAES---GVAYSWDLKT 237 (340)
Q Consensus 168 ~~l~s~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d---g~i~vwd~~~ 237 (340)
++|+.....++ .|.+||+ .+++.. .+ .+...... ..| ++||.+++..+.+ +.|+++++..
T Consensus 348 ~~Ia~~~~~~~~~~I~v~d~--~~g~~~-~L----t~~~~~~~--p~~-spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 348 KKIAMVHGSGGQYRIAVMDL--STGSVR-TL----TPGSLDES--PSF-APNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CEEEEEECCCCceeEEEEEC--CCCCeE-EC----CCCCCCCC--ceE-CCCCCEEEEEEecCCceEEEEEECCC
Confidence 99988655333 6888887 343321 11 11111111 245 8999988877653 3577777754
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-13 Score=120.83 Aligned_cols=221 Identities=21% Similarity=0.330 Sum_probs=161.7
Q ss_pred CccCCCCc-eeeeeeCCCCCCCCCeEEEEe-eccccccccccCceEEEEE-cCCCcEEEEEccC-CeeEEEecCCCCCCe
Q 036605 1 IWSTNDGS-LLAEWKQPDGEPVVSYSCLAC-GFVGKKRRKERGTLLLALG-TSNGDILAVDVLT-GEMKWKSTGRHPGGL 76 (340)
Q Consensus 1 vwd~~~g~-~~~~~~~~~~~~~~~v~~l~~-sp~~~~~~~~~~~~~l~~g-~~dg~i~i~d~~~-~~~~~~~~~~h~~~v 76 (340)
+|+...+. ....+.. .+...+..+.+ ++++. .+++.. ..|+.+.+|+... ......+.. |...|
T Consensus 91 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v 158 (466)
T COG2319 91 LWDLDNGEKLIKSLEG---LHDSSVSKLALSSPDGN--------SILLASSSLDGTVKLWDLSTPGKLIRTLEG-HSESV 158 (466)
T ss_pred EEEcCCCceeEEEEec---cCCCceeeEEEECCCcc--------eEEeccCCCCccEEEEEecCCCeEEEEEec-CcccE
Confidence 46666665 4455551 12246777777 55553 134443 4499999999988 667777777 99999
Q ss_pred EEEEEecCCCEEEEEeC-CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC-EEEE--ecCcEEEEECCCCceeE-Ee
Q 036605 77 AGLAFAKKGRSLHVVGT-NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEK-IFAL--ASSEVRILSLENGEEVL-KF 151 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~--~~~~i~i~d~~~~~~~~-~~ 151 (340)
..++|+|++..+++++. |+.+++|++..+..+..+..|...+.+++++|++. .+++ .++.+++||...+..+. .+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~ 238 (466)
T COG2319 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238 (466)
T ss_pred EEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeec
Confidence 99999999998888885 99999999999888888888999999999999998 4444 33448999998777777 67
Q ss_pred ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEE
Q 036605 152 SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAY 231 (340)
Q Consensus 152 ~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~ 231 (340)
..|.... ...|++++.++++++. |+.+++|+++.... ....+ ..|...+..+ .+ .|++..+++++.|+.+.
T Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~---~~~~~-~~~~~~v~~~--~~-~~~~~~~~~~~~d~~~~ 309 (466)
T COG2319 239 SGHSDSV-VSSFSPDGSLLASGSS-DGTIRLWDLRSSSS---LLRTL-SGHSSSVLSV--AF-SPDGKLLASGSSDGTVR 309 (466)
T ss_pred CCCCcce-eEeECCCCCEEEEecC-CCcEEEeeecCCCc---EEEEE-ecCCccEEEE--EE-CCCCCEEEEeeCCCcEE
Confidence 8887775 4489999978887666 99999999842222 11111 2444444444 44 67778888899999999
Q ss_pred EEECCCCCccC
Q 036605 232 SWDLKTVSQDE 242 (340)
Q Consensus 232 vwd~~~~~~~~ 242 (340)
+|+........
T Consensus 310 ~~~~~~~~~~~ 320 (466)
T COG2319 310 LWDLETGKLLS 320 (466)
T ss_pred EEEcCCCceEE
Confidence 99887755443
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.3e-15 Score=118.22 Aligned_cols=172 Identities=11% Similarity=0.152 Sum_probs=126.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeecc--ccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-CCC-CCe
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFV--GKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-RHP-GGL 76 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~h~-~~v 76 (340)
+||..+|+.+.+|+ ++...+..+.|..+ .. .+.+|+.||+|++||++......++.. .++ .+.
T Consensus 54 lyd~~tg~~l~~fk----~~~~~~N~vrf~~~ds~h---------~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 54 LYDKGTGQLLEEFK----GPPATTNGVRFISCDSPH---------GVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred EEeccchhhhheec----CCCCcccceEEecCCCCC---------eeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57888999999998 78888889999764 35 799999999999999988764444432 244 355
Q ss_pred EEEEEecCCCEEEEEe----CCCcEEEEeCCCCeE-EEE-eecCCCCeeEEEEccCC-CEEEEecCc--EEEEECCCCce
Q 036605 77 AGLAFAKKGRSLHVVG----TNGMASEMKSEMGEV-IRE-FKASEKPISSSAFLCEE-KIFALASSE--VRILSLENGEE 147 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~----~dg~i~~wd~~~~~~-~~~-~~~~~~~i~~l~~~~~~-~~l~~~~~~--i~i~d~~~~~~ 147 (340)
.+++.+..++.+++|. .+-.|.+||++..+. +.. ...|...|+++.|+|.. .+|++++-+ |.+||+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 6777666677777764 356899999998765 333 56799999999999976 455665544 99999975422
Q ss_pred ---eEEeecCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEEcc
Q 036605 148 ---VLKFSDDVGPLQYVSASDGA-KIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 148 ---~~~~~~~~~~v~~~~~s~~~-~~l~s~~~~d~~i~iwd~~ 186 (340)
+.....|...|..+.|...+ +.|.+ -.......+|++.
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~c-lTH~Etf~~~ele 242 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMC-LTHMETFAIYELE 242 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEE-EEccCceeEEEcc
Confidence 23334567789999998877 23444 3348889999884
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6e-15 Score=127.81 Aligned_cols=186 Identities=15% Similarity=0.105 Sum_probs=132.9
Q ss_pred EEEE--EcCCCcEEEEEccCCee-----EEEecCCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCe-------EE
Q 036605 44 LLAL--GTSNGDILAVDVLTGEM-----KWKSTGRHPGGLAGLAFAK-KGRSLHVVGTNGMASEMKSEMGE-------VI 108 (340)
Q Consensus 44 ~l~~--g~~dg~i~i~d~~~~~~-----~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~~wd~~~~~-------~~ 108 (340)
++|+ .+..|.|-||++..... +-.+. ....|+.+.|+| |...|+.++.||.|++|.+..+. +.
T Consensus 593 rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe 670 (1012)
T KOG1445|consen 593 RVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE 670 (1012)
T ss_pred eEEEEecCCCceEEEEEcCCCCCCCcccccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc
Confidence 4443 56679999999875421 11222 345799999999 77899999999999999987543 34
Q ss_pred EEeecCCCCeeEEEEccCC-CEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 109 REFKASEKPISSSAFLCEE-KIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 109 ~~~~~~~~~i~~l~~~~~~-~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
..++.|...|+++.|+|-- ..|++++.+ |++||+.+++....+.+|...|..++|+|+|+.+++.+. ||+|+||.-
T Consensus 671 ~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK-Dg~~rVy~P 749 (1012)
T KOG1445|consen 671 KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK-DGTLRVYEP 749 (1012)
T ss_pred eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec-CceEEEeCC
Confidence 4578899999999999953 445555444 999999999999999999999999999999999999888 999999997
Q ss_pred cCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCC----CcEEEEECCCC
Q 036605 186 DISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAES----GVAYSWDLKTV 238 (340)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d----g~i~vwd~~~~ 238 (340)
+. ..+.+..-.-..+....-+ .| .-+|.++++.+.| ..|.+||..+.
T Consensus 750 rs-~e~pv~Eg~gpvgtRgARi----~w-acdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 750 RS-REQPVYEGKGPVGTRGARI----LW-ACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred CC-CCCccccCCCCccCcceeE----EE-EecCcEEEEecccccchhhhhhhhhhhc
Confidence 42 1111111111111111111 33 4577777777655 45777876653
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-13 Score=105.28 Aligned_cols=148 Identities=14% Similarity=0.181 Sum_probs=117.8
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMK 101 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd 101 (340)
-.|++|...|... -++.++.|+.++.||+++|+....+.+ |++.|.++.--.....+++|+.||++++||
T Consensus 115 PeINam~ldP~en---------Si~~AgGD~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~qilsG~EDGtvRvWd 184 (325)
T KOG0649|consen 115 PEINAMWLDPSEN---------SILFAGGDGVIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANGQILSGAEDGTVRVWD 184 (325)
T ss_pred CccceeEeccCCC---------cEEEecCCeEEEEEEecCCEEEEEEcC-CcceeeeeeecccCcceeecCCCccEEEEe
Confidence 3678888888774 355556899999999999999999999 999999999855566899999999999999
Q ss_pred CCCCeEEEEeecCC----------CCeeEEEEccCCCEEEEecCc-EEEEECCCCceeEEeecCCCCeEEEEECCCCCEE
Q 036605 102 SEMGEVIREFKASE----------KPISSSAFLCEEKIFALASSE-VRILSLENGEEVLKFSDDVGPLQYVSASDGAKII 170 (340)
Q Consensus 102 ~~~~~~~~~~~~~~----------~~i~~l~~~~~~~~l~~~~~~-i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 170 (340)
.++++.+..+...+ .-|-+++ -+..+++++++. +.+|.+++.+....|.. +..+..+.|..+ .+
T Consensus 185 ~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~t~vfpi-pa~v~~v~F~~d--~v 259 (325)
T KOG0649|consen 185 TKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSESTCVFPI-PARVHLVDFVDD--CV 259 (325)
T ss_pred ccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCceEEEec-ccceeEeeeecc--eE
Confidence 99999887754321 1234444 456688887776 99999999988877753 567888888655 57
Q ss_pred EEEEcCCCeEEEEEc
Q 036605 171 ITAGYGEKHLQVWRC 185 (340)
Q Consensus 171 ~s~~~~d~~i~iwd~ 185 (340)
++++. .+.|.-|.+
T Consensus 260 l~~G~-g~~v~~~~l 273 (325)
T KOG0649|consen 260 LIGGE-GNHVQSYTL 273 (325)
T ss_pred EEecc-ccceeeeee
Confidence 77777 789999987
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.2e-16 Score=129.01 Aligned_cols=203 Identities=14% Similarity=0.190 Sum_probs=158.4
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAF 81 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 81 (340)
+|..++.+..++. .-..|..+.|-.+.. ++|++ ....++|||- .|..++.+.. | ..|..+.|
T Consensus 156 ~Dw~t~~L~~Ei~-----v~Etv~Dv~~LHneq---------~~AVA-QK~y~yvYD~-~GtElHClk~-~-~~v~rLeF 217 (545)
T KOG1272|consen 156 FDWVTKKLHFEIN-----VMETVRDVTFLHNEQ---------FFAVA-QKKYVYVYDN-NGTELHCLKR-H-IRVARLEF 217 (545)
T ss_pred eecccceeeeeee-----hhhhhhhhhhhcchH---------HHHhh-hhceEEEecC-CCcEEeehhh-c-Cchhhhcc
Confidence 4666777777665 347788889988777 66665 5678999994 4666777775 4 48999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE--ecCcEEEEECCCCceeEEeecCCCCeE
Q 036605 82 AKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL--ASSEVRILSLENGEEVLKFSDDVGPLQ 159 (340)
Q Consensus 82 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~~~~~~~~~~~~~~v~ 159 (340)
-|..-+|++++..|.+..-|+.+|+.+..+....+.+..+..+|-...+-+ +.++|.+|...+.+++.++..|.++|.
T Consensus 218 LPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~ 297 (545)
T KOG1272|consen 218 LPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVS 297 (545)
T ss_pred cchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcc
Confidence 998888999999999999999999999998888888999999998877766 455699999999999999999999999
Q ss_pred EEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 160 YVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 160 ~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
++++.++|.|++++|. |+.++|||+|. ..+. .... ..++....++ +..| +++.+....|.+|.
T Consensus 298 siAv~~~G~YMaTtG~-Dr~~kIWDlR~-~~ql-~t~~--tp~~a~~ls~-----Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 298 SIAVDRGGRYMATTGL-DRKVKIWDLRN-FYQL-HTYR--TPHPASNLSL-----SQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred eEEECCCCcEEeeccc-ccceeEeeecc-cccc-ceee--cCCCcccccc-----cccc--ceeeecCCeeeeeh
Confidence 9999999999999999 99999999963 2222 2221 1343333333 3333 55556666799994
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=124.60 Aligned_cols=214 Identities=13% Similarity=0.096 Sum_probs=154.3
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKS 102 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~ 102 (340)
.|..++|-|||. .|+.+. +..+.+||+..|..+.++++ |.+.|+|++|+.||+.+++|+.|..|.+|+.
T Consensus 14 ci~d~afkPDGs---------qL~lAA-g~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGkrFASG~aDK~VI~W~~ 82 (1081)
T KOG1538|consen 14 CINDIAFKPDGT---------QLILAA-GSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGKRFASGSADKSVIIWTS 82 (1081)
T ss_pred chheeEECCCCc---------eEEEec-CCEEEEEeCCCccccccccc-ccceEEEEEEccCCceeccCCCceeEEEecc
Confidence 788999999996 565554 44799999999999999999 9999999999999999999999999999985
Q ss_pred CCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc-EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEE
Q 036605 103 EMGEVIREFKASEKPISSSAFLCEEKIFALASSE-VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQ 181 (340)
Q Consensus 103 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~-i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~ 181 (340)
.-.- +.+ ..|...|.|+.|+|-...|++++-. .-+|...... +.+.. ....+.+.+|..||+|++.+-. +|+|.
T Consensus 83 klEG-~Lk-YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~-nGTIs 157 (1081)
T KOG1538|consen 83 KLEG-ILK-YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMF-NGTIS 157 (1081)
T ss_pred cccc-eee-eccCCeeeEeecCchHHHhhhcchhhccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEecc-CceEE
Confidence 4221 222 2588899999999999999886644 8889876543 22222 2356888999999999999766 99999
Q ss_pred EEEccCCCCCccCCceeeecCCCeeeeeecCCCC--CCCCEEEEEeCCCcEEEEECCC---C-CccCCCCCceEEEeecc
Q 036605 182 VWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNG--EDGTVILAVAESGVAYSWDLKT---V-SQDEKTNPAKITVKLKK 255 (340)
Q Consensus 182 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~s~dg~i~vwd~~~---~-~~~~~~~p~~i~~~~~~ 255 (340)
|-+- .++....+.-+-+....++.+.++..+ .....+++.....++.+|.+.. + +..-.+.|+.++.-..+
T Consensus 158 iRNk---~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 158 IRNK---NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNG 234 (1081)
T ss_pred eecC---CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCC
Confidence 8864 444333332222333444444222221 2235788888899999998865 1 22223778777765443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=113.03 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=122.8
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE----------EecCCCCCCeEEEEEecCCCEEE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW----------KSTGRHPGGLAGLAFAKKGRSLH 89 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~----------~~~~~h~~~v~~v~~~~~~~~l~ 89 (340)
..+.++|..|-.... ...+|++|..+|.+.+||+.++..+. .... |..+|.++.+.+.-..=+
T Consensus 149 Klgsvmc~~~~~~c~------s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~as-h~qpvlsldyas~~~rGi 221 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACG------STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNAS-HKQPVLSLDYASSCDRGI 221 (323)
T ss_pred ccCceeeeecccccc------ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhh-ccCcceeeeechhhcCCc
Confidence 346677777643332 13478899999999999999984332 2333 899999999987655667
Q ss_pred EEeCCCcEEEEeCCCC--eE--EEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEE
Q 036605 90 VVGTNGMASEMKSEMG--EV--IREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSA 163 (340)
Q Consensus 90 s~~~dg~i~~wd~~~~--~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~ 163 (340)
+++.+..+..|++... .. .....-..-.+..+.+-||++++++++-+ |++|..++..++..+..|...|.+++|
T Consensus 222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAf 301 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF 301 (323)
T ss_pred CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEe
Confidence 7888888889887643 21 11233334568889999999999997655 999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCeEEEEEc
Q 036605 164 SDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 164 s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
+|+...+++++. |.+|.+|++
T Consensus 302 spd~~lmAaask-D~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCELMAAASK-DARISLWKL 322 (323)
T ss_pred CCCCchhhhccC-CceEEeeec
Confidence 999888888777 999999986
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=112.77 Aligned_cols=161 Identities=11% Similarity=0.028 Sum_probs=127.4
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC------CeeEEEecCCCCCCeEEEEEecCCCEEEEEe
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT------GEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG 92 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 92 (340)
+|.+.|.++.||.+++ +|++|+.|..+++|+++. .+.+......|...|.|++|......|++|+
T Consensus 54 ~H~GCiNAlqFS~N~~---------~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDR---------FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred hhccccceeeeccCCe---------EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 7889999999999999 999999999999999763 2334333334778999999999889999999
Q ss_pred CCCcEEEEeCCCCeEEEEeec--CCCCeeEEEEccCCCEEEEecCc--EEEEECCCCc-ee--EEeecCCCCeEEEEECC
Q 036605 93 TNGMASEMKSEMGEVIREFKA--SEKPISSSAFLCEEKIFALASSE--VRILSLENGE-EV--LKFSDDVGPLQYVSASD 165 (340)
Q Consensus 93 ~dg~i~~wd~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~-~~--~~~~~~~~~v~~~~~s~ 165 (340)
.+++|...|+.+.+.+..+.. ..+.|+.+..+|..+.+++.... |.+||.+... .+ ............+.|+|
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 999999999999888776643 23489999999998888775544 9999998654 22 22233445677889999
Q ss_pred CCCEEEEEEcCCCeEEEEEccCC
Q 036605 166 GAKIIITAGYGEKHLQVWRCDIS 188 (340)
Q Consensus 166 ~~~~l~s~~~~d~~i~iwd~~~~ 188 (340)
....|+......+-+.+||.+..
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred CCceeEEeccccCCCCceeeccc
Confidence 88776666665888999998643
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.4e-13 Score=117.85 Aligned_cols=194 Identities=15% Similarity=0.111 Sum_probs=123.4
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCC---CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEE-EEeCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSN---GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLH-VVGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d 94 (340)
.+...+.+.+|+|||+ .|+..+.+ ..|++||+.+++.. .+.. ..+.+...+|+|||+.|+ +.+.+
T Consensus 193 ~~~~~v~~p~wSPDG~---------~la~~s~~~~~~~I~~~dl~~g~~~-~l~~-~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 193 SSPEPIISPAWSPDGT---------KLAYVSFESKKPVVYVHDLATGRRR-VVAN-FKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred cCCCCcccceEcCCCC---------EEEEEEccCCCcEEEEEECCCCCEE-Eeec-CCCCccceEECCCCCEEEEEEccC
Confidence 3556788999999998 67766532 45999999988754 3443 445677899999999876 45667
Q ss_pred CcEEEE--eCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec---Cc--EEEEECCCCceeEEeecCCCCeEEEEECCCC
Q 036605 95 GMASEM--KSEMGEVIREFKASEKPISSSAFLCEEKIFALAS---SE--VRILSLENGEEVLKFSDDVGPLQYVSASDGA 167 (340)
Q Consensus 95 g~i~~w--d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 167 (340)
|...+| |+.++. ...+..+........|+|||+.++..+ +. |+++++.++.. ..+...........|+|+|
T Consensus 262 g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG 339 (427)
T PRK02889 262 GNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDG 339 (427)
T ss_pred CCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCC
Confidence 765555 555554 445555555566788999999886532 22 66666666543 2232223334567899999
Q ss_pred CEEEEEEcCCC--eEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCC---cEEEEEC
Q 036605 168 KIIITAGYGEK--HLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESG---VAYSWDL 235 (340)
Q Consensus 168 ~~l~s~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg---~i~vwd~ 235 (340)
++|+..+..++ .|.+||+ .+++.. .+. .. ..... ..| +|||..|+.++.++ .+++.++
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~--~~g~~~-~lt---~~-~~~~~--p~~-spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDL--ATGQVT-ALT---DT-TRDES--PSF-APNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CEEEEEEccCCcEEEEEEEC--CCCCeE-Ecc---CC-CCccC--ceE-CCCCCEEEEEEecCCCEEEEEEEC
Confidence 99987665233 6889998 343321 111 11 11111 245 89999888877654 2444454
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-12 Score=104.39 Aligned_cols=169 Identities=15% Similarity=0.172 Sum_probs=127.1
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc-CCeeEEEecCC-CCCCeEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL-TGEMKWKSTGR-HPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~-h~~~v~~ 78 (340)
|||-....++.++. ...+|..+.++++ .+++. ..+.|++|... +.+.++.+... .+..+.+
T Consensus 79 IWDD~k~~~i~el~-----f~~~I~~V~l~r~-----------riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 79 IWDDLKERCIIELS-----FNSEIKAVKLRRD-----------RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCS 141 (346)
T ss_pred EEecccCcEEEEEE-----eccceeeEEEcCC-----------eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEe
Confidence 68866666666665 5588999988853 34444 36689999987 45555555431 2444555
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEeCCCCeE--EEEeecCCCCeeEEEEccCCCEEEEecCc---EEEEECCCCceeEEee
Q 036605 79 LAFAKKGRSLHVVG-TNGMASEMKSEMGEV--IREFKASEKPISSSAFLCEEKIFALASSE---VRILSLENGEEVLKFS 152 (340)
Q Consensus 79 v~~~~~~~~l~s~~-~dg~i~~wd~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~~---i~i~d~~~~~~~~~~~ 152 (340)
++-+.+...|+.-| .-|.|.+-|+...+. ...+.+|...|.|++++.+|..+|+++.. |+|||..+|+.+.++.
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R 221 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR 221 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee
Confidence 55443444555544 349999999886655 36688999999999999999999997765 9999999999999884
Q ss_pred c--CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccC
Q 036605 153 D--DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDI 187 (340)
Q Consensus 153 ~--~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~ 187 (340)
- ....|.+++|||++.+|++++. .|+++||.++.
T Consensus 222 RG~d~A~iy~iaFSp~~s~LavsSd-KgTlHiF~l~~ 257 (346)
T KOG2111|consen 222 RGVDRADIYCIAFSPNSSWLAVSSD-KGTLHIFSLRD 257 (346)
T ss_pred cCCchheEEEEEeCCCccEEEEEcC-CCeEEEEEeec
Confidence 3 2367999999999999999777 99999999964
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-14 Score=120.47 Aligned_cols=162 Identities=12% Similarity=0.166 Sum_probs=127.9
Q ss_pred eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC----------eeEEEecCCCCCCeEE
Q 036605 9 LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG----------EMKWKSTGRHPGGLAG 78 (340)
Q Consensus 9 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~----------~~~~~~~~~h~~~v~~ 78 (340)
.+.+|. +|.++|.|++..+++. .+++|+-||+|+.|++... .....+.+ |.+.|+.
T Consensus 336 pi~tfr----aH~gPVl~v~v~~n~~---------~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G-htdavw~ 401 (577)
T KOG0642|consen 336 PILTFR----AHEGPVLCVVVPSNGE---------HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG-HTDAVWL 401 (577)
T ss_pred eeEEEe----cccCceEEEEecCCce---------EEEeeccCceeeeeccCCCCCcccccCcchhccceec-cccceee
Confidence 335666 8999999999999998 8999999999999965421 12345566 9999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEe---------------------------------------------ec
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSEMGEVIREF---------------------------------------------KA 113 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---------------------------------------------~~ 113 (340)
+++|+....|++|+.||+++.|+.....+ ..| ..
T Consensus 402 l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s 480 (577)
T KOG0642|consen 402 LALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFES 480 (577)
T ss_pred eeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccc
Confidence 99999888999999999999998754332 100 00
Q ss_pred -------CCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEE
Q 036605 114 -------SEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWR 184 (340)
Q Consensus 114 -------~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd 184 (340)
....+..+..+|...+.+++. +.|+++|..+++.+.....|...++++++.|+|.+|++++. |+.+++|.
T Consensus 481 ~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~-d~sv~l~k 559 (577)
T KOG0642|consen 481 SASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH-DGSVRLWK 559 (577)
T ss_pred cCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecC-Cceeehhh
Confidence 011234455666666666643 34999999999999999999999999999999999999777 99999999
Q ss_pred cc
Q 036605 185 CD 186 (340)
Q Consensus 185 ~~ 186 (340)
++
T Consensus 560 ld 561 (577)
T KOG0642|consen 560 LD 561 (577)
T ss_pred cc
Confidence 83
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=123.66 Aligned_cols=200 Identities=11% Similarity=0.049 Sum_probs=156.0
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCC---CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSN---GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG 95 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg 95 (340)
.|...|..+.|+..|. ||++...+ ..|.|+++........|.. -.+.|.++.|+|...+|+.++..
T Consensus 519 ~~~k~i~~vtWHrkGD---------YlatV~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p~lfVaTq~- 587 (733)
T KOG0650|consen 519 KHPKSIRQVTWHRKGD---------YLATVMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKPYLFVATQR- 587 (733)
T ss_pred ecCCccceeeeecCCc---------eEEEeccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCceEEEEecc-
Confidence 3778999999999999 99987654 5789999988877767765 66789999999999898887655
Q ss_pred cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCC-ceeEEeecCCCCeEEEEECCCCCEEEE
Q 036605 96 MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENG-EEVLKFSDDVGPLQYVSASDGAKIIIT 172 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s 172 (340)
.|++||+..+..+.++......|..++++|.|..|+.++.+ +..||+.-. ++.+.+..|...+++++|++.-..+++
T Consensus 588 ~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas 667 (733)
T KOG0650|consen 588 SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFAS 667 (733)
T ss_pred ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeee
Confidence 89999999887777776667789999999999888887766 888998754 455778889999999999999888888
Q ss_pred EEcCCCeEEEEEccCCCCC----ccCCceeeecCCCe----eeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 173 AGYGEKHLQVWRCDISSKT----VNKGPALSMRHSPV----AIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 173 ~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
++. |+++.||--...+.- .+-.+...-+|... +.++ .| +|...+|++++.||.|++|
T Consensus 668 ~sd-Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~--~w-HP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 668 GSD-DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT--IW-HPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecC-CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee--cc-cCCCceEEecCCCceEEee
Confidence 776 999999864222211 11111111134332 4444 77 9999999999999999998
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=128.42 Aligned_cols=201 Identities=13% Similarity=0.145 Sum_probs=152.6
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
+|-..|.|..|...|+ ++++|+.|..++||..+++.++..+.+ |.+.|+.++.+.....+++++.|..|+
T Consensus 188 gH~naVyca~fDrtg~---------~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGR---------YIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred hhhhheeeeeeccccc---------eEeecCccceeeeeeccchhhhccCCC-CccccchhccchhhhhhhhcccCceEE
Confidence 6888999999999999 999999999999999999999999999 999999999998888999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCcEEEEECC-----------------------------------
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSEVRILSLE----------------------------------- 143 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~----------------------------------- 143 (340)
+|-+.++.++..+.+|.+.|++|+|+|-. -...++++++||.+
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 99999999999999999999999999743 00123334444443
Q ss_pred ------------------------------------------------CCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 144 ------------------------------------------------NGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 144 ------------------------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
+|..+..+.+|...+..+.++|-+..++..+.
T Consensus 336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag 415 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG 415 (1113)
T ss_pred CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc
Confidence 33333333345566666777776666555444
Q ss_pred CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 176 GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
.||...|||+ ..+....... .+| ....+ +.| +++|..++....-|.++|.....++
T Consensus 416 ~dgst~iwdi--~eg~pik~y~--~gh-~kl~d--~kF-Sqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 416 YDGSTIIWDI--WEGIPIKHYF--IGH-GKLVD--GKF-SQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CCCceEeeec--ccCCcceeee--ccc-ceeec--ccc-CCCCceEecCCCCCceEEeccCCCc
Confidence 5999999998 4443333222 232 22333 366 8999999988888999998765543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-12 Score=116.71 Aligned_cols=116 Identities=19% Similarity=0.257 Sum_probs=95.8
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC--C--eeEEEecCCCCCCeEEEEEecCCCEEEEEeCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT--G--EMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~--~--~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d 94 (340)
+|.-.++|.++||+++ ++|+|..||.|.+|.-.. + .....+.- |...|++++|+++|.+|++||..
T Consensus 203 ~Htf~~t~~~~spn~~---------~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW-H~~~V~~L~fS~~G~~LlSGG~E 272 (792)
T KOG1963|consen 203 HHTFNITCVALSPNER---------YLAAGDSDGRILVWRDFGSSDDSETCTLLHW-HHDEVNSLSFSSDGAYLLSGGRE 272 (792)
T ss_pred hhcccceeEEeccccc---------eEEEeccCCcEEEEeccccccccccceEEEe-cccccceeEEecCCceEeecccc
Confidence 6777799999999999 999999999999997433 1 13345566 88899999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE--ecCcEEEEECCCC
Q 036605 95 GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL--ASSEVRILSLENG 145 (340)
Q Consensus 95 g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~~ 145 (340)
|.+.+|.+.+++ .+-+..-.++|..+.++||+.+.+. +|+.|.+....+.
T Consensus 273 ~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 273 GVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred eEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 999999999988 4556667789999999999987754 6777777765443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-13 Score=106.19 Aligned_cols=213 Identities=13% Similarity=0.076 Sum_probs=149.9
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
.|.+.|+|+.|-.+++ |.+|...|.|.+|++.+.+.+..+...|...|+.+.--|+ ..|.+-+.|+.+.
T Consensus 12 p~~~~v~s~~fqa~~r----------L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER----------LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred cccchheehhhccchh----------hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEE
Confidence 6788999999988777 9999999999999999998887777547888999988876 5678889999999
Q ss_pred EEeCCCCeEEEE------------e---------------e--------------------------cCCCCeeEEEEc-
Q 036605 99 EMKSEMGEVIRE------------F---------------K--------------------------ASEKPISSSAFL- 124 (340)
Q Consensus 99 ~wd~~~~~~~~~------------~---------------~--------------------------~~~~~i~~l~~~- 124 (340)
+|++.-+..+.. + . ...+.+.+..+.
T Consensus 81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 999865321100 0 0 001112222211
Q ss_pred cCCC-EEEEecC---cEEEEECCCCcee----------EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCC
Q 036605 125 CEEK-IFALASS---EVRILSLENGEEV----------LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSK 190 (340)
Q Consensus 125 ~~~~-~l~~~~~---~i~i~d~~~~~~~----------~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~ 190 (340)
.++. .++.++. .+.+||+.++..+ .....|.++|.++.|.+.-..=++++. +..+..|.++..++
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga-~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGA-DDKLVMYSLNHSTG 239 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCc-cccceeeeeccccC
Confidence 1233 3333433 3999999998443 333568899999999876555567666 77888999965555
Q ss_pred CccCCceeeecCCCee-eeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCCce
Q 036605 191 TVNKGPALSMRHSPVA-IDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNPAK 248 (340)
Q Consensus 191 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p~~ 248 (340)
.........+.++... ..+ .||++.+++++.||+|+||+.++...+..++-++
T Consensus 240 slq~~~e~~lknpGv~gvrI-----RpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs 293 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRI-----RPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS 293 (323)
T ss_pred cccccceEEecCCCccceEE-----ccCCcEEeecccCCcEEEEEeccCCchhhhhhhh
Confidence 5544444444554332 233 6999999999999999999999988777555543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.3e-13 Score=117.36 Aligned_cols=175 Identities=14% Similarity=0.091 Sum_probs=123.6
Q ss_pred CCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCC
Q 036605 51 NGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN---GMASEMKSEMGEVIREFKASEKPISSSAFLCEE 127 (340)
Q Consensus 51 dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~ 127 (340)
+..|++||..... ...+.. |...+..++|+|||+.|+.++.+ ..|++||+.+++.... .........++|+|||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~-~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNR-SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCC-ceEecc-CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCC
Confidence 4689999986554 455666 78889999999999999887654 4699999988764322 2222334578999999
Q ss_pred CEEEEe---cCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecC
Q 036605 128 KIFALA---SSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRH 202 (340)
Q Consensus 128 ~~l~~~---~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 202 (340)
+.|+.+ ++. |++||+.++. +..+..+...+..+.|+|||+.|+.++..++...||+++...+.. ... .+
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l----~~ 333 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV----GG 333 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe----cC
Confidence 988763 232 6777887664 455666777788999999999888777667889999885433321 111 22
Q ss_pred CCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 203 SPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
.. .. ..| +|+|.+++.++.++ +.+||+.++..
T Consensus 334 ~~--~~--~~~-SpDG~~ia~~~~~~-i~~~Dl~~g~~ 365 (429)
T PRK01742 334 RG--YS--AQI-SADGKTLVMINGDN-VVKQDLTSGST 365 (429)
T ss_pred CC--CC--ccC-CCCCCEEEEEcCCC-EEEEECCCCCe
Confidence 21 11 245 89999998888766 67799877653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.3e-12 Score=108.38 Aligned_cols=170 Identities=14% Similarity=0.169 Sum_probs=119.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|.|..+.+.+.++. ........+.|+||++ ++++.+.||.|.++|+.+++.+.++.. .....+++
T Consensus 20 viD~~t~~~~~~i~----~~~~~h~~~~~s~Dgr---------~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~ 84 (369)
T PF02239_consen 20 VIDGATNKVVARIP----TGGAPHAGLKFSPDGR---------YLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIA 84 (369)
T ss_dssp EEETTT-SEEEEEE-----STTEEEEEE-TT-SS---------EEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEE
T ss_pred EEECCCCeEEEEEc----CCCCceeEEEecCCCC---------EEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEE
Confidence 35777888888887 2223345578999999 899999999999999999999988874 34578999
Q ss_pred EecCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecC-------CCCeeEEEEccCCCEEEEe---cCcEEEEECCCCceeE
Q 036605 81 FAKKGRSLHVVG-TNGMASEMKSEMGEVIREFKAS-------EKPISSSAFLCEEKIFALA---SSEVRILSLENGEEVL 149 (340)
Q Consensus 81 ~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~-------~~~i~~l~~~~~~~~l~~~---~~~i~i~d~~~~~~~~ 149 (340)
+++||++++++. ..+.+.++|.++.+++..+... ...+..+..+|....++.. .+.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999998776 5799999999999988876532 3457788888888855543 2348888987765442
Q ss_pred -EeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 150 -KFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 150 -~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
.............|+|+++|++.+....+.|.++|.
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEee
Confidence 233334567889999999999888777888888887
|
... |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-12 Score=118.14 Aligned_cols=232 Identities=15% Similarity=0.095 Sum_probs=152.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc-----CCeeEEEecC-----
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL-----TGEMKWKSTG----- 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~-----~~~~~~~~~~----- 70 (340)
|||.+.++++..|... .-....|+.|.+-.... ..++.+|+.||.|+||+-- +.+++..+.+
T Consensus 1090 vwd~e~~~~l~~F~n~-~~~~t~Vs~l~liNe~D-------~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~ 1161 (1387)
T KOG1517|consen 1090 VWDWEKGRLLNGFDNG-AFPDTRVSDLELINEQD-------DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQL 1161 (1387)
T ss_pred EEecccCceeccccCC-CCCCCccceeeeecccc-------hhheeeeccCceEEEecccccccCCceeEEeeccccccC
Confidence 6899999988777633 23457899999965442 2289999999999999732 2233333322
Q ss_pred -CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeec-CCCCeeEEEEcc-CCCEEEE--ecCcEEEEECCCC
Q 036605 71 -RHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKA-SEKPISSSAFLC-EEKIFAL--ASSEVRILSLENG 145 (340)
Q Consensus 71 -~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~l~~~~-~~~~l~~--~~~~i~i~d~~~~ 145 (340)
+-.+.-.-+.|.....+|+++|.-..|++||...-..+..+.. ....++++.-+. .|..+++ +||.|++||.+..
T Consensus 1162 ~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1162 PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred ccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccC
Confidence 0111224567877677788777788999999987776666543 344566665443 3577766 6777999998765
Q ss_pred c---eeEEeecCCCC--eEEEEECCCCCE-EEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCC
Q 036605 146 E---EVLKFSDDVGP--LQYVSASDGAKI-IITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGT 219 (340)
Q Consensus 146 ~---~~~~~~~~~~~--v~~~~~s~~~~~-l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (340)
. .+..++.|... |..+.+.+.|-. |++++. +|.|++||+|.+..+.........+... ++.+...++...
T Consensus 1242 ~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~-~G~I~~~DlR~~~~e~~~~iv~~~~yGs---~lTal~VH~hap 1317 (1387)
T KOG1517|consen 1242 PPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ-DGDIQLLDLRMSSKETFLTIVAHWEYGS---ALTALTVHEHAP 1317 (1387)
T ss_pred CccccceeecccCCcccceeEEeecCCCcceeeecc-CCeEEEEecccCcccccceeeeccccCc---cceeeeeccCCC
Confidence 3 35666778766 999999887655 888777 9999999998654333222221111111 111222277778
Q ss_pred EEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 220 VILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 220 ~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
.+++|+. +.|.||++... ++..+++
T Consensus 1318 iiAsGs~-q~ikIy~~~G~-~l~~~k~ 1342 (1387)
T KOG1517|consen 1318 IIASGSA-QLIKIYSLSGE-QLNIIKY 1342 (1387)
T ss_pred eeeecCc-ceEEEEecChh-hhccccc
Confidence 8999988 99999998753 3333443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-11 Score=110.88 Aligned_cols=195 Identities=12% Similarity=0.104 Sum_probs=126.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCC---CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEE-EeCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSN---GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHV-VGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d 94 (340)
.+...+....|+|||+ .|+..+.+ ..|++||+.+++.. .+.. ..+.+...+|+|||+.|+. .+.+
T Consensus 196 ~~~~~~~~p~wSpDG~---------~la~~s~~~~~~~l~~~~l~~g~~~-~l~~-~~g~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 196 QSREPILSPRWSPDGK---------RIAYVSFEQKRPRIFVQNLDTGRRE-QITN-FEGLNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred cCCCceeeeeECCCCC---------EEEEEEcCCCCCEEEEEECCCCCEE-EccC-CCCCcCCeEECCCCCEEEEEEccC
Confidence 3556788999999997 67665433 36999999988644 3433 4455667999999998764 4444
Q ss_pred C--cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec-C----cEEEEECCCCceeEEeecCCCCeEEEEECCCC
Q 036605 95 G--MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS-S----EVRILSLENGEEVLKFSDDVGPLQYVSASDGA 167 (340)
Q Consensus 95 g--~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 167 (340)
| .|.+||+.++... .+..+........|+|||+.++..+ . .|+++|+.+++.. .+...........|+|+|
T Consensus 265 g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg 342 (430)
T PRK00178 265 GNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADG 342 (430)
T ss_pred CCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceEECCCC
Confidence 4 6888999887654 4444555566788999999876532 2 3888998887643 332222334467899999
Q ss_pred CEEEEEEcCCC--eEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCC---CcEEEEECC
Q 036605 168 KIIITAGYGEK--HLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAES---GVAYSWDLK 236 (340)
Q Consensus 168 ~~l~s~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d---g~i~vwd~~ 236 (340)
++|+.....++ .|.+||+ .+++. ..+. ...... ...| +|+|..++..+.+ +.|+++++.
T Consensus 343 ~~i~~~~~~~~~~~l~~~dl--~tg~~-~~lt----~~~~~~--~p~~-spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 343 KTLVMVHRQDGNFHVAAQDL--QRGSV-RILT----DTSLDE--SPSV-APNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CEEEEEEccCCceEEEEEEC--CCCCE-EEcc----CCCCCC--CceE-CCCCCEEEEEEecCCceEEEEEECC
Confidence 99988775444 4667776 44332 1111 111111 1244 8899988877654 346666664
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-12 Score=117.72 Aligned_cols=217 Identities=12% Similarity=0.150 Sum_probs=141.5
Q ss_pred CCceeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCe-------eEEEecCCCCCCeE
Q 036605 6 DGSLLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGE-------MKWKSTGRHPGGLA 77 (340)
Q Consensus 6 ~g~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-------~~~~~~~~h~~~v~ 77 (340)
.|.+++.+. .|+..|..++.++.. . ++++|+.||+|++||...-. ...++.. ....+.
T Consensus 1037 ~G~lVAhL~----Ehs~~v~k~a~s~~~~s---------~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~ 1102 (1431)
T KOG1240|consen 1037 RGILVAHLH----EHSSAVIKLAVSSEHTS---------LFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVE 1102 (1431)
T ss_pred cceEeehhh----hccccccceeecCCCCc---------eEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceE
Confidence 456666665 688888888888766 7 99999999999999976421 2223332 456889
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCeE-------EEEeecCC--CCeeEEEEccC-CC-EEEE--ecCcEEEEECCC
Q 036605 78 GLAFAKKGRSLHVVGTNGMASEMKSEMGEV-------IREFKASE--KPISSSAFLCE-EK-IFAL--ASSEVRILSLEN 144 (340)
Q Consensus 78 ~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~-------~~~~~~~~--~~i~~l~~~~~-~~-~l~~--~~~~i~i~d~~~ 144 (340)
++.+.+.+..++.++.||.|.+.++.-.+. ......+. ..+..-++... +. .++. --+.|..||+++
T Consensus 1103 ~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1103 KVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred EEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence 999999999999999999999999875211 11111111 22333333322 22 2322 233499999988
Q ss_pred CceeEEe--ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEE
Q 036605 145 GEEVLKF--SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVIL 222 (340)
Q Consensus 145 ~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 222 (340)
......+ ....+.|++++.+|.+.+++.|.. .|.+.+||+|- +..+. .+...+...+..+.++...+.....+
T Consensus 1183 ~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts-~G~l~lWDLRF--~~~i~--sw~~P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1183 RHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTS-RGQLVLWDLRF--RVPIL--SWEHPARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred hhhHHhhhcCccccceeEEEecCCceEEEEecC-CceEEEEEeec--Cceee--cccCcccCCcceEEeeccCCCCceEE
Confidence 7655433 445589999999999999999777 99999999962 22222 22223333344444344344334444
Q ss_pred EEe--CCCcEEEEECCCCCcc
Q 036605 223 AVA--ESGVAYSWDLKTVSQD 241 (340)
Q Consensus 223 ~~s--~dg~i~vwd~~~~~~~ 241 (340)
+++ ..+.|.+|++.++...
T Consensus 1258 s~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred EecccCCCceeeeecccCcce
Confidence 444 5678999999987443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-12 Score=115.35 Aligned_cols=227 Identities=15% Similarity=0.141 Sum_probs=161.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEe------------
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKS------------ 68 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~------------ 68 (340)
||-+.+|+++..+. .|..+++.+.+.|...+ ..++.+++.+|.|++||...+.++..+
T Consensus 41 VyS~~Tg~~i~~l~----~~~a~l~s~~~~~~~~~------~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~ 110 (792)
T KOG1963|consen 41 VYSTATGECITSLE----DHTAPLTSVIVLPSSEN------ANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYK 110 (792)
T ss_pred EEecchHhhhhhcc----cccCccceeeecCCCcc------ceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEec
Confidence 45667777777665 78889999999776531 237889999999999997666544332
Q ss_pred --------------------------------------------------------------------------------
Q 036605 69 -------------------------------------------------------------------------------- 68 (340)
Q Consensus 69 -------------------------------------------------------------------------------- 68 (340)
T Consensus 111 ~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~ 190 (792)
T KOG1963|consen 111 PAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPK 190 (792)
T ss_pred hhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecc
Confidence
Q ss_pred ----------cCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC--C--eEEEEeecCCCCeeEEEEccCCCEEEEec
Q 036605 69 ----------TGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEM--G--EVIREFKASEKPISSSAFLCEEKIFALAS 134 (340)
Q Consensus 69 ----------~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~--~--~~~~~~~~~~~~i~~l~~~~~~~~l~~~~ 134 (340)
...|.-.+++.+++|.+++++++..||.|.+|.--. + .....+.-|...|.+++|+++|.+|++|+
T Consensus 191 ~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG 270 (792)
T KOG1963|consen 191 HTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG 270 (792)
T ss_pred cceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc
Confidence 002455678999999999999999999999996432 1 23345778899999999999999999999
Q ss_pred Cc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc-CCCCCccCCceee-----ecCCCee
Q 036605 135 SE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD-ISSKTVNKGPALS-----MRHSPVA 206 (340)
Q Consensus 135 ~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~-~~~~~~~~~~~~~-----~~~~~~~ 206 (340)
.. +.+|.+.+++ ..-++--.++|..+.++||+.+...... |+.|.+-... +..+..+..+... -......
T Consensus 271 ~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~-DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 271 REGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLE-DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred cceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEec-CceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 88 8999999987 2333555689999999999998888777 9999998761 1111111111100 0001111
Q ss_pred eeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 207 IDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 207 ~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
..+ +. .|....++-.+..|.|.+||+.+...+.
T Consensus 349 t~~--~i-dpr~~~~vln~~~g~vQ~ydl~td~~i~ 381 (792)
T KOG1963|consen 349 TGV--SI-DPRTNSLVLNGHPGHVQFYDLYTDSTIY 381 (792)
T ss_pred eeE--EE-cCCCCceeecCCCceEEEEeccccceee
Confidence 111 22 4555667778889999999998877665
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-11 Score=109.76 Aligned_cols=194 Identities=17% Similarity=0.126 Sum_probs=127.5
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCC---CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEE-EeCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSN---GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHV-VGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d 94 (340)
.+...+...+|+|+|+ +|+.++.. ..|++||+.+++.. .+.. +.+.+.+++|+|||+.|+. .+.+
T Consensus 187 ~~~~~~~~p~~Spdg~---------~la~~~~~~~~~~i~v~d~~~g~~~-~~~~-~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 187 RSREPILSPAWSPDGQ---------KLAYVSFESGKPEIYVQDLATGQRE-KVAS-FPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred cCCCceecccCCCCCC---------EEEEEEcCCCCcEEEEEECCCCCEE-Eeec-CCCCccceEECCCCCEEEEEECCC
Confidence 3445688899999998 77776543 47999999988644 3333 5566778999999997764 4444
Q ss_pred --CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec-C----cEEEEECCCCceeEEeecCCCCeEEEEECCCC
Q 036605 95 --GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS-S----EVRILSLENGEEVLKFSDDVGPLQYVSASDGA 167 (340)
Q Consensus 95 --g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 167 (340)
..|++||+.++... .+..+........|+|+|+.++..+ . .|+++|+.+++. ..+..+...+..+.|+|+|
T Consensus 256 ~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 256 GNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCC
Confidence 35899999887643 3444444455778999999876532 2 388999887753 4454455667788999999
Q ss_pred CEEEEEEcCCC--eEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCC---cEEEEEC
Q 036605 168 KIIITAGYGEK--HLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESG---VAYSWDL 235 (340)
Q Consensus 168 ~~l~s~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg---~i~vwd~ 235 (340)
++++.+....+ .|.+||+ ..+... .+. .. .... ...| ++++.+|+..+.++ .+++.+.
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~--~~~~~~-~l~---~~-~~~~--~p~~-spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDL--DGGGER-VLT---DT-GLDE--SPSF-APNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CEEEEEEccCCceEEEEEeC--CCCCeE-Ecc---CC-CCCC--CceE-CCCCCEEEEEEeCCCcEEEEEEEC
Confidence 99998776322 6777776 333221 111 11 1111 1134 78998888877764 3444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-11 Score=110.22 Aligned_cols=196 Identities=15% Similarity=0.166 Sum_probs=123.6
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcC-CC--cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEE-EeCCC
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTS-NG--DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHV-VGTNG 95 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~dg 95 (340)
....+.+..|||||+ .|+..+. ++ .|++||+.+++.. .+.. ..+.....+|+|||+.|+. .+.+|
T Consensus 216 ~~~~~~~p~wSPDG~---------~La~~s~~~g~~~L~~~dl~tg~~~-~lt~-~~g~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 216 SPEPLMSPAWSPDGR---------KLAYVSFENRKAEIFVQDIYTQVRE-KVTS-FPGINGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred CCCcccCceECCCCC---------EEEEEEecCCCcEEEEEECCCCCeE-EecC-CCCCcCCeeECCCCCEEEEEEeCCC
Confidence 345678899999997 6766543 33 5889999888643 2332 3334557899999997765 45566
Q ss_pred c--EEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec-C----cEEEEECCCCceeEEeecCCCCeEEEEECCCCC
Q 036605 96 M--ASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS-S----EVRILSLENGEEVLKFSDDVGPLQYVSASDGAK 168 (340)
Q Consensus 96 ~--i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 168 (340)
. |+++|+.+++.. .+..+.......+|+|||+.++... . +|+++|+.+++.. .+...........|+|||+
T Consensus 285 ~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~ 362 (448)
T PRK04792 285 QPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGR 362 (448)
T ss_pred CeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCC
Confidence 4 888899887653 4444555567889999999886532 1 2888899887643 3322222334578999999
Q ss_pred EEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCC-Cc--EEEEECC
Q 036605 169 IIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAES-GV--AYSWDLK 236 (340)
Q Consensus 169 ~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d-g~--i~vwd~~ 236 (340)
+|+..+..++...||-++..+++.. .+. .. .. +....| +|+|..|+..+.+ |. +++++..
T Consensus 363 ~l~~~~~~~g~~~I~~~dl~~g~~~-~lt---~~-~~--d~~ps~-spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 363 SMIMVNRTNGKFNIARQDLETGAMQ-VLT---ST-RL--DESPSV-APNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEEEEEecCCceEEEEEECCCCCeE-Ecc---CC-CC--CCCceE-CCCCCEEEEEEecCCceEEEEEECC
Confidence 9988776556555654433444321 111 11 11 111144 8899888766544 33 6666763
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-12 Score=104.30 Aligned_cols=197 Identities=14% Similarity=0.126 Sum_probs=135.1
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCC-EEEEEeCCCcEEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGR-SLHVVGTNGMASEM 100 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i~~w 100 (340)
..+..++|++.-- -+|++..|-.|++||-.. .....++...+..|+|++|-|.+. .|+.|+. +-|.+|
T Consensus 99 ~dlr~~aWhqH~~---------~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW 167 (445)
T KOG2139|consen 99 IDLRGVAWHQHII---------AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIW 167 (445)
T ss_pred cceeeEeechhhh---------hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEE
Confidence 4567899998654 588999999999999766 555566654567899999999654 5555554 468899
Q ss_pred eCCCC----eEE--------EEee-cCCCCeeEEEEccCCCEEEEe---cCcEEEEECCCCceeEEeecCCCCeEEEEEC
Q 036605 101 KSEMG----EVI--------REFK-ASEKPISSSAFLCEEKIFALA---SSEVRILSLENGEEVLKFSDDVGPLQYVSAS 164 (340)
Q Consensus 101 d~~~~----~~~--------~~~~-~~~~~i~~l~~~~~~~~l~~~---~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s 164 (340)
..... ..+ ..++ ....+|++++|.+||..++++ +..|.|||..++..+.-.....+.+.-+.||
T Consensus 168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS 247 (445)
T KOG2139|consen 168 SDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS 247 (445)
T ss_pred EcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc
Confidence 75421 111 1111 123689999999999999884 4459999999987664444455788899999
Q ss_pred CCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 165 DGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 165 ~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
||+.+|+++.. |+..++|+.. .+... .... -.+..+... +| +|+|.+|+.+... .-.+|.+.-..
T Consensus 248 Pdgd~lfaAt~-davfrlw~e~-q~wt~-erw~---lgsgrvqta--cW-spcGsfLLf~~sg-sp~lysl~f~~ 312 (445)
T KOG2139|consen 248 PDGDVLFAATC-DAVFRLWQEN-QSWTK-ERWI---LGSGRVQTA--CW-SPCGSFLLFACSG-SPRLYSLTFDG 312 (445)
T ss_pred CCCCEEEEecc-cceeeeehhc-cccee-ccee---ccCCceeee--ee-cCCCCEEEEEEcC-CceEEEEeecC
Confidence 99999999888 9999999752 11111 1111 112233333 67 8999988776644 35666665433
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=116.76 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=107.3
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
..|.+.+.|-.|+|+|. -|++++.||.|++|.- +|-+..++.. ...+|+|++|.|+.+.++.|. .+.+
T Consensus 101 ~AH~~A~~~gRW~~dGt---------gLlt~GEDG~iKiWSr-sGMLRStl~Q-~~~~v~c~~W~p~S~~vl~c~-g~h~ 168 (737)
T KOG1524|consen 101 SAHAAAISSGRWSPDGA---------GLLTAGEDGVIKIWSR-SGMLRSTVVQ-NEESIRCARWAPNSNSIVFCQ-GGHI 168 (737)
T ss_pred hhhhhhhhhcccCCCCc---------eeeeecCCceEEEEec-cchHHHHHhh-cCceeEEEEECCCCCceEEec-CCeE
Confidence 37889999999999998 7999999999999984 4533334443 667999999999887766644 3467
Q ss_pred EEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCC
Q 036605 98 SEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDG 166 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 166 (340)
.+=.+.....+..+++|.+-|.++.|++...++++++.+ .++||.. |..+..-..|..+|++++|.|+
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc
Confidence 676676666778899999999999999999999999888 8899964 4455555566667777777666
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-13 Score=110.91 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=117.4
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc-EEEEECCCCceeEEeec--
Q 036605 77 AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE-VRILSLENGEEVLKFSD-- 153 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~-i~i~d~~~~~~~~~~~~-- 153 (340)
.+++|+++|..|++++.||.+++|+..+...+.....|...|.++.|+|||++|++.+.+ .+||+..++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~ 227 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFS 227 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcc
Confidence 678999999999999999999999988877777778899999999999999999985555 99999999966655432
Q ss_pred CCCCeEEEEECCCC---CE-EEEEEcCCCeEEEEEccCCCCCcc-CCceeeecC-CCeeeeeecCCCCCCCCEEEEEeCC
Q 036605 154 DVGPLQYVSASDGA---KI-IITAGYGEKHLQVWRCDISSKTVN-KGPALSMRH-SPVAIDCKNSPNGEDGTVILAVAES 227 (340)
Q Consensus 154 ~~~~v~~~~~s~~~---~~-l~s~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~s~d 227 (340)
-......+.|+.|+ .+ +++.....+.|+.||+....+... ........+ ....+++ +++|++++.|+.|
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V-----S~dGkf~AlGT~d 302 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV-----SDDGKFLALGTMD 302 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE-----cCCCcEEEEeccC
Confidence 23445677887766 33 333333356777777633222100 100100122 2334555 8999999999999
Q ss_pred CcEEEEECCCCCccC
Q 036605 228 GVAYSWDLKTVSQDE 242 (340)
Q Consensus 228 g~i~vwd~~~~~~~~ 242 (340)
|.|.|++....+.+.
T Consensus 303 GsVai~~~~~lq~~~ 317 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQ 317 (398)
T ss_pred CcEEEEEeceeeeeE
Confidence 999999999877776
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=118.05 Aligned_cols=169 Identities=12% Similarity=0.162 Sum_probs=122.1
Q ss_pred EEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEe-ecCCCCeeEEEEccC--CCEEEEecCc--EEEE
Q 036605 66 WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREF-KASEKPISSSAFLCE--EKIFALASSE--VRIL 140 (340)
Q Consensus 66 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~i~~l~~~~~--~~~l~~~~~~--i~i~ 140 (340)
..+.+ |++.|+|+.|+.+|.+|++|++|-.+.|||....+.++.+ ++|...|.++.|-|. .++++++.++ |++|
T Consensus 44 ~eL~G-H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTG-HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhcc-ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 45677 9999999999999999999999999999999887777765 478889999999984 4567776665 9999
Q ss_pred ECCCC----------ceeEEeecCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEEccCCCC-CccC-CceeeecCCCeee
Q 036605 141 SLENG----------EEVLKFSDDVGPLQYVSASDGAK-IIITAGYGEKHLQVWRCDISSK-TVNK-GPALSMRHSPVAI 207 (340)
Q Consensus 141 d~~~~----------~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~ 207 (340)
|+... +....+..|...|..++..|++. .+.+++. ||+|+-+|++.... .... .........+..+
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE-DGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE-DGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC-CcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99742 23355677888999999999984 5556555 99999999974321 1100 0000001111222
Q ss_pred eeecCC-CCCCCCEEEEEeCCCcEEEEECC
Q 036605 208 DCKNSP-NGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 208 ~~~~~~-~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.+.|+. ...+..+|++|+.|-..++||.+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 222222 24567789999999999999953
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=114.92 Aligned_cols=160 Identities=19% Similarity=0.234 Sum_probs=116.7
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecC---CCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCCC---------------
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTG---RHPGGLAGLAFAKKGR-SLHVVGTNGMASEMKSEM--------------- 104 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~---~h~~~v~~v~~~~~~~-~l~s~~~dg~i~~wd~~~--------------- 104 (340)
-|.+|-..|.|.++|....+....+.. ..+..|+|+.|-|.+. .++.+-.+|.+++||..-
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 477888899999998766432221211 1346899999998544 555567889999997431
Q ss_pred -------------CeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCE
Q 036605 105 -------------GEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKI 169 (340)
Q Consensus 105 -------------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 169 (340)
..++..|......|..++|+|||++||+.+.+ ++|||..+.+.+..++..-+...+++|+|||+|
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccE
Confidence 12233344455688999999999999997666 999999998877777767788999999999999
Q ss_pred EEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeee
Q 036605 170 IITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDC 209 (340)
Q Consensus 170 l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (340)
|++++. |..|.||.+ ..++....-. +|..++..+
T Consensus 347 IvtGGE-DDLVtVwSf--~erRVVARGq---GHkSWVs~V 380 (636)
T KOG2394|consen 347 IVTGGE-DDLVTVWSF--EERRVVARGQ---GHKSWVSVV 380 (636)
T ss_pred EEecCC-cceEEEEEe--ccceEEEecc---ccccceeeE
Confidence 999998 999999999 4444333333 565555544
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.1e-12 Score=102.07 Aligned_cols=203 Identities=13% Similarity=0.128 Sum_probs=133.9
Q ss_pred CCeEEEEeeccccccccccCceEEEEEc-CCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGT-SNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEM 100 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~w 100 (340)
..|++|.|.+||. .+++++ .|..|.|||+.++..+..... ..+.+.-+.|+||+.+|+.+.-|+..++|
T Consensus 196 ~pVtsmqwn~dgt---------~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLkwSPdgd~lfaAt~davfrlw 265 (445)
T KOG2139|consen 196 NPVTSMQWNEDGT---------ILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLKWSPDGDVLFAATCDAVFRLW 265 (445)
T ss_pred ceeeEEEEcCCCC---------EEeecccCcceEEEEcCCCCCccccccc-CCCceeeEEEcCCCCEEEEecccceeeee
Confidence 7899999999997 677766 568999999999875543323 56789999999999999999999999999
Q ss_pred eCCCCeEEEEeecCCCCeeEEEEccCCCEEE-EecCcEEEEECCCCc------------e---eEEe------ec---CC
Q 036605 101 KSEMGEVIREFKASEKPISSSAFLCEEKIFA-LASSEVRILSLENGE------------E---VLKF------SD---DV 155 (340)
Q Consensus 101 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~~~i~i~d~~~~~------------~---~~~~------~~---~~ 155 (340)
..........+....+.|...+|+|+|++|+ +..+.-.+|.+.-.. . +..+ .+ ..
T Consensus 266 ~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~c 345 (445)
T KOG2139|consen 266 QENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCC 345 (445)
T ss_pred hhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCccccc
Confidence 6554444445555666899999999999874 455555555442110 0 0111 01 13
Q ss_pred CCeEEEEECCCCCEEEEEEcCC-------CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCC
Q 036605 156 GPLQYVSASDGAKIIITAGYGE-------KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESG 228 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg 228 (340)
+.+.+++|.|.|.|+++.-.+. ..|.+||.+....-......+.-+..+..+.+ .+...++.+|..+=+.|
T Consensus 346 geaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF--~pl~n~g~lLsiaWsTG 423 (445)
T KOG2139|consen 346 GEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISF--GPLKNEGRLLSIAWSTG 423 (445)
T ss_pred CccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEe--eecccCCcEEEEEeccC
Confidence 6789999999999999865532 23566665311100000001111233455555 33235667777777788
Q ss_pred cEEEEECC
Q 036605 229 VAYSWDLK 236 (340)
Q Consensus 229 ~i~vwd~~ 236 (340)
.+.-|++.
T Consensus 424 riq~ypl~ 431 (445)
T KOG2139|consen 424 RIQRYPLT 431 (445)
T ss_pred ceEeeeeE
Confidence 88877754
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-12 Score=98.16 Aligned_cols=151 Identities=21% Similarity=0.293 Sum_probs=100.5
Q ss_pred EEEEEecCCCEEEEEeC---C-------CcEEEEeC--CCCeEEEEeec-CCCCeeEEEEccCCCEEEEecC----cEEE
Q 036605 77 AGLAFAKKGRSLHVVGT---N-------GMASEMKS--EMGEVIREFKA-SEKPISSSAFLCEEKIFALASS----EVRI 139 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~---d-------g~i~~wd~--~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----~i~i 139 (340)
..+.|+++|..|+.-.. | |...+|-+ .. .....+.. ...+|.+++|+|+|..+++..+ .|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46778888876655322 1 23344443 33 23334433 3457999999999998866322 3999
Q ss_pred EECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC--CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCC
Q 036605 140 LSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG--EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGED 217 (340)
Q Consensus 140 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (340)
||++ ++.+..+. ...+..+.|+|+|+++++++.+ .|.|.+||.+ ..+.+... .+. ....+ .| +|+
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~--~~~~i~~~----~~~-~~t~~--~W-sPd 154 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR--KKKKISTF----EHS-DATDV--EW-SPD 154 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC--CCEEeecc----ccC-cEEEE--EE-cCC
Confidence 9997 55666664 4677899999999999998863 4679999983 33332222 222 23333 67 999
Q ss_pred CCEEEEEeC------CCcEEEEECCCCCccC
Q 036605 218 GTVILAVAE------SGVAYSWDLKTVSQDE 242 (340)
Q Consensus 218 ~~~l~~~s~------dg~i~vwd~~~~~~~~ 242 (340)
|.++++++. |+.++||++. ++++.
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence 999999875 6779999985 44433
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.1e-12 Score=110.91 Aligned_cols=178 Identities=14% Similarity=0.128 Sum_probs=119.4
Q ss_pred CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN---GMASEMKSEMGEVIREFKASEKPISSSAFLCEEK 128 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~ 128 (340)
..|.++|.. |.....+.. +...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +..........+|+|||+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALS-SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEecc-CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 467777864 444445555 77789999999999998877643 459999999887543 333344567899999999
Q ss_pred EEEE-ec--Cc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCC
Q 036605 129 IFAL-AS--SE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHS 203 (340)
Q Consensus 129 ~l~~-~~--~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (340)
.++. .+ +. |+++|+.++. ...+..+........|+|||++|+..+..++...||.++...+.. ..+.+ . .
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~--~-g 327 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTF--T-G 327 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEec--C-C
Confidence 8864 32 22 7777776654 455655555667789999999988766656777888775343321 11111 1 1
Q ss_pred CeeeeeecCCCCCCCCEEEEEeCCC---cEEEEECCCCCc
Q 036605 204 PVAIDCKNSPNGEDGTVILAVAESG---VAYSWDLKTVSQ 240 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~l~~~s~dg---~i~vwd~~~~~~ 240 (340)
..... ..| +|+|.+++..+.++ .|++||+.+++.
T Consensus 328 ~~~~~--~~~-SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 328 SYNTS--PRI-SPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CCcCc--eEE-CCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 11111 144 89999998877654 599999887643
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-11 Score=103.69 Aligned_cols=189 Identities=20% Similarity=0.176 Sum_probs=126.9
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAF 123 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~ 123 (340)
++++-..+|.|.+.|..+.+.+.++.. ....-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...++++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~-~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~ 85 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPT-GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAV 85 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE--STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcC-CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEE
Confidence 445667789999999999999999885 33334557899999999999999999999999999999987655 4578999
Q ss_pred ccCCCEEEEec---CcEEEEECCCCceeEEeecC-------CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCcc
Q 036605 124 LCEEKIFALAS---SEVRILSLENGEEVLKFSDD-------VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVN 193 (340)
Q Consensus 124 ~~~~~~l~~~~---~~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~ 193 (340)
++||++++++. +.+.++|.++.+.+..+... ...+..+..+|....++..-.+.+.|.+-|. ......
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy--~d~~~~ 163 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY--SDPKNL 163 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET--TTSSCE
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe--cccccc
Confidence 99999998754 55999999999988877532 2456788888888867665664588877776 232221
Q ss_pred CCceeeecCCCeeeeeecCCCCCCCCEEEE-EeCCCcEEEEECCCCCcc
Q 036605 194 KGPALSMRHSPVAIDCKNSPNGEDGTVILA-VAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~s~dg~i~vwd~~~~~~~ 241 (340)
....+..+. ...+. .+ .++++++++ ...+..|-++|..+.+..
T Consensus 164 ~~~~i~~g~--~~~D~--~~-dpdgry~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 164 KVTTIKVGR--FPHDG--GF-DPDGRYFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp EEEEEE--T--TEEEE--EE--TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred ceeeecccc--ccccc--cc-CcccceeeecccccceeEEEeeccceEE
Confidence 111222222 22333 44 788887765 456778999998876544
|
... |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=109.23 Aligned_cols=174 Identities=10% Similarity=-0.019 Sum_probs=119.6
Q ss_pred CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT---NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEK 128 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~ 128 (340)
..|.++|.... ....+.. |...+...+|+|||+.|+..+. +..|.+||+.+++.. .+......+...+|+|||+
T Consensus 182 ~~l~~~d~dg~-~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTD-GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCC-CcEEEec-CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC
Confidence 37889997554 4455665 7789999999999998887764 468999999988753 3444556677899999999
Q ss_pred EEEE-ec----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCC--eEEEEEccCCCCCccCCceeeec
Q 036605 129 IFAL-AS----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEK--HLQVWRCDISSKTVNKGPALSMR 201 (340)
Q Consensus 129 ~l~~-~~----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~ 201 (340)
.++. .+ .+|++||+.++.. ..+..+........|+|||++|+..+..++ .|++||+ ..+.. ..+. .
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~--~g~~~-~~lt---~ 331 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA--DGSNP-RRIS---F 331 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC--CCCCe-EEee---c
Confidence 8754 22 2399999988754 556666666778999999999988765444 5666665 33322 2221 1
Q ss_pred CCCeeeeeecCCCCCCCCEEEEEeCC---CcEEEEECCCC
Q 036605 202 HSPVAIDCKNSPNGEDGTVILAVAES---GVAYSWDLKTV 238 (340)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~l~~~s~d---g~i~vwd~~~~ 238 (340)
........ .| +|+|.+|+..+.+ ..|.+||+...
T Consensus 332 ~~~~~~~~--~~-SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 332 GGGRYSTP--VW-SPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CCCcccCe--EE-CCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 11112122 44 8999999887654 35788887543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-13 Score=115.54 Aligned_cols=195 Identities=15% Similarity=0.180 Sum_probs=158.1
Q ss_pred EEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 036605 25 SCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEM 104 (340)
Q Consensus 25 ~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~ 104 (340)
..+.++.+|+ +|+.|+..|.|-.+|..++++...+. -...|.++.|-.+.+++++ .....+++||- .
T Consensus 133 Y~~~ytrnGr---------hlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AV-AQK~y~yvYD~-~ 199 (545)
T KOG1272|consen 133 YHLDYTRNGR---------HLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAV-AQKKYVYVYDN-N 199 (545)
T ss_pred eeeeecCCcc---------EEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHh-hhhceEEEecC-C
Confidence 4577888898 99999999999999999999888876 4568999999877766665 56679999995 4
Q ss_pred CeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEE
Q 036605 105 GEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQV 182 (340)
Q Consensus 105 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~i 182 (340)
|..++.++.+ ..+..+.|-|..-+|++++.. ++--|+.+|+.+..+....+.+..|.-+|-+..+-.|.. .|+|.+
T Consensus 200 GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs-nGtVSl 277 (545)
T KOG1272|consen 200 GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS-NGTVSL 277 (545)
T ss_pred CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC-CceEEe
Confidence 6777777754 468899999988777776665 889999999999888777888899999998878888777 999999
Q ss_pred EEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 183 WRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 183 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
|.- ..++.+..+. .|...+.++ ++ .++|.|+++.+.|..++|||+++..++.
T Consensus 278 WSP--~skePLvKiL---cH~g~V~si--Av-~~~G~YMaTtG~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 278 WSP--NSKEPLVKIL---CHRGPVSSI--AV-DRGGRYMATTGLDRKVKIWDLRNFYQLH 329 (545)
T ss_pred cCC--CCcchHHHHH---hcCCCcceE--EE-CCCCcEEeecccccceeEeeeccccccc
Confidence 997 4555444444 566555554 44 8999999999999999999999866554
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=101.66 Aligned_cols=142 Identities=11% Similarity=0.233 Sum_probs=120.7
Q ss_pred EEEEEcCC--CcEEEEEccCCeeEEEecCCC--------CCCeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCe-EEEE
Q 036605 44 LLALGTSN--GDILAVDVLTGEMKWKSTGRH--------PGGLAGLAFAKK--GRSLHVVGTNGMASEMKSEMGE-VIRE 110 (340)
Q Consensus 44 ~l~~g~~d--g~i~i~d~~~~~~~~~~~~~h--------~~~v~~v~~~~~--~~~l~s~~~dg~i~~wd~~~~~-~~~~ 110 (340)
++|+|+.. ..+.|||++..+.++.-...- +--++++.|-+. ...|+++..-+.+++||.+.++ ++..
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 67779888 899999999987666554311 123577888886 7899999999999999998764 6777
Q ss_pred eecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEE-eecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 111 FKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLK-FSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 111 ~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
|.....+++++...|+++++++++.. +..||++.++.+.. +.+..+.|+++..+|.+++++++|. |+.++|+|+.
T Consensus 243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GL-DRyvRIhD~k 320 (412)
T KOG3881|consen 243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL-DRYVRIHDIK 320 (412)
T ss_pred eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecc-ceeEEEeecc
Confidence 88888999999999999999887655 99999999988865 7888999999999999999999999 9999999983
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-14 Score=128.49 Aligned_cols=117 Identities=16% Similarity=0.273 Sum_probs=107.2
Q ss_pred eEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEE
Q 036605 64 MKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILS 141 (340)
Q Consensus 64 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d 141 (340)
.+..+.+ |...|+|+.|...|.++++|++|..++||...++..+....+|.+.|+.++++.+..++++++.+ |++|-
T Consensus 182 ~ikrLlg-H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 182 NIKRLLG-HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHh-hhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 3445566 99999999999999999999999999999999999999999999999999999999899888888 99999
Q ss_pred CCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 142 LENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
+.++.++..+.+|.+.|++++|+|-. +++. ||++++||.+
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~-dgt~~~wd~r 300 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSD-DGTCRIWDAR 300 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCC-CCceEecccc
Confidence 99999999999999999999999965 4455 9999999986
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-11 Score=113.30 Aligned_cols=201 Identities=12% Similarity=0.109 Sum_probs=132.7
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCC--CCCCeEEEEEec--CCCEEEEEeCCCcEE
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGR--HPGGLAGLAFAK--KGRSLHVVGTNGMAS 98 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--h~~~v~~v~~~~--~~~~l~s~~~dg~i~ 98 (340)
.-..+.|+|-.. .++++...-.|++||.+.++.+..|..+ ....|+.+.+-. |...|++|+.||.|+
T Consensus 1066 ~pk~~~~hpf~p---------~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP---------QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred CCceeeecCCCc---------eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEE
Confidence 445677888777 7888888889999999999987777651 235788888865 456899999999999
Q ss_pred EEeCC-C----CeEEEEeecC-------CCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEee-cCCCCeEEEEE
Q 036605 99 EMKSE-M----GEVIREFKAS-------EKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFS-DDVGPLQYVSA 163 (340)
Q Consensus 99 ~wd~~-~----~~~~~~~~~~-------~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~-~~~~~v~~~~~ 163 (340)
+|+-- + .+.+.-+.+- .+.-.-+.|.....+|+++++. |+|||......+..+. +....++++.-
T Consensus 1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence 99732 2 2233323211 1111335566655555554433 9999999887776663 33455666665
Q ss_pred CCC-CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCe--eeeeecCCCCCCCC-EEEEEeCCCcEEEEECCCC
Q 036605 164 SDG-AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPV--AIDCKNSPNGEDGT-VILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 164 s~~-~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~l~~~s~dg~i~vwd~~~~ 238 (340)
+.. |..|++| ..||.|++||.|+...+ ......-.|... +..+ .+ .+.|. .|++|+.+|.|++||++..
T Consensus 1217 ~~~~gn~i~AG-faDGsvRvyD~R~a~~d--s~v~~~R~h~~~~~Iv~~--sl-q~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1217 DLVHGNIIAAG-FADGSVRVYDRRMAPPD--SLVCVYREHNDVEPIVHL--SL-QRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cccCCceEEEe-ecCCceEEeecccCCcc--ccceeecccCCcccceeE--Ee-ecCCCcceeeeccCCeEEEEecccC
Confidence 433 5666665 44999999999755432 122222244444 4444 33 33333 5999999999999999874
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-12 Score=102.96 Aligned_cols=186 Identities=11% Similarity=0.005 Sum_probs=133.1
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCE-EEEEeCCCcEEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRS-LHVVGTNGMASEM 100 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~dg~i~~w 100 (340)
..|.-+.|..|.- -.|.+...++.|.+|++...+...++.. .+.++..++|+|||+. |.+...|-.|.+|
T Consensus 49 dki~yieW~ads~--------~ilC~~yk~~~vqvwsl~Qpew~ckIde-g~agls~~~WSPdgrhiL~tseF~lriTVW 119 (447)
T KOG4497|consen 49 DKIVYIEWKADSC--------HILCVAYKDPKVQVWSLVQPEWYCKIDE-GQAGLSSISWSPDGRHILLTSEFDLRITVW 119 (447)
T ss_pred HHhhheeeeccce--------eeeeeeeccceEEEEEeecceeEEEecc-CCCcceeeeECCCcceEeeeecceeEEEEE
Confidence 3455678887773 1677788999999999999999989988 7889999999999965 5556678999999
Q ss_pred eCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc-----EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 101 KSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE-----VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 101 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~-----i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
.+.+.+... +.-.+..+..++|+|||++.+...+. +.+..-+.-..+..|....-..+.+.|+|||..|+.-..
T Consensus 120 SL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~ 198 (447)
T KOG4497|consen 120 SLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN 198 (447)
T ss_pred EeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecc
Confidence 998876543 33345567899999999999886654 333333333445666666677889999999988776221
Q ss_pred C-CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 176 G-EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 176 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
- +-.|..|.. + -.+..+ .| +|.+++|+.|+.|+.+++.+.-+
T Consensus 199 ~Leykv~aYe~---------------~--lG~k~v--~w-sP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 199 VLEYKVYAYER---------------G--LGLKFV--EW-SPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred hhhheeeeeee---------------c--cceeEE--Ee-ccccceEEeeccchhhhhhceee
Confidence 0 222223322 0 111122 44 89999999999999999977655
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-11 Score=107.90 Aligned_cols=178 Identities=16% Similarity=0.101 Sum_probs=119.0
Q ss_pred CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN---GMASEMKSEMGEVIREFKASEKPISSSAFLCEEK 128 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~ 128 (340)
..|.+||.... ....+.. +...+.+++|+|||+.|+.++.+ ..|.+||+.+++... +........++.|+|||+
T Consensus 184 ~~l~i~D~~g~-~~~~lt~-~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY-NPQTILR-SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC-CceEeec-CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCC
Confidence 36889998644 3445555 67789999999999998887643 469999998887543 333344456789999999
Q ss_pred EEEE-e--cC--cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCC
Q 036605 129 IFAL-A--SS--EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHS 203 (340)
Q Consensus 129 ~l~~-~--~~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (340)
.++. . ++ +|++||+.+++. ..+..+......+.|+|||++|+.++..++...+|.++..+++. ..+.+ . .
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~--~-g 335 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTF--Q-G 335 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeec--C-C
Confidence 7754 2 22 399999988854 45555555567789999999998877656665555543244332 11111 1 1
Q ss_pred CeeeeeecCCCCCCCCEEEEEeCCC---cEEEEECCCCCc
Q 036605 204 PVAIDCKNSPNGEDGTVILAVAESG---VAYSWDLKTVSQ 240 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~l~~~s~dg---~i~vwd~~~~~~ 240 (340)
...... .| +|+|.+++..+.++ .|++||+.+++.
T Consensus 336 ~~~~~~--~~-SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 336 NYNARA--SV-SPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred CCccCE--EE-CCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 111111 44 89999998776543 589999876543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-10 Score=103.46 Aligned_cols=176 Identities=15% Similarity=0.130 Sum_probs=117.9
Q ss_pred cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCE
Q 036605 53 DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT---NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKI 129 (340)
Q Consensus 53 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 129 (340)
.|.++|...... ..+.. +...+...+|+|||+.|+..+. +..|.+|++.+++.... .........++|+|||+.
T Consensus 180 ~l~~~d~dg~~~-~~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCC-EEeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 699999876543 34444 6678999999999998887543 35799999988864332 223334567899999998
Q ss_pred EEEe---cC--cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCC
Q 036605 130 FALA---SS--EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSP 204 (340)
Q Consensus 130 l~~~---~~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (340)
|+.. ++ +|++||+.+++. ..+..+...+....|+|||+.|+.++..++...||.++...++. ..+. ....
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt---~~~~ 331 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRIT---WEGS 331 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEee---cCCC
Confidence 8753 22 399999988754 44444455678899999999998877645666777654344332 1111 1111
Q ss_pred eeeeeecCCCCCCCCEEEEEeCC---CcEEEEECCCCC
Q 036605 205 VAIDCKNSPNGEDGTVILAVAES---GVAYSWDLKTVS 239 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~s~d---g~i~vwd~~~~~ 239 (340)
..... .| +|+|.+++..+.+ ..|++||+.++.
T Consensus 332 ~~~~~--~~-SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 332 QNQDA--DV-SSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred CccCE--EE-CCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 11111 34 8999998876654 358889987764
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-11 Score=98.16 Aligned_cols=189 Identities=16% Similarity=0.108 Sum_probs=134.1
Q ss_pred eEEEEEcCCCcEEEEEccCCe----eEEEecCCCCCCeEEEEEecCCC-EEEEEeCC--CcEEEEeCCCCeEEEEeecC-
Q 036605 43 LLLALGTSNGDILAVDVLTGE----MKWKSTGRHPGGLAGLAFAKKGR-SLHVVGTN--GMASEMKSEMGEVIREFKAS- 114 (340)
Q Consensus 43 ~~l~~g~~dg~i~i~d~~~~~----~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d--g~i~~wd~~~~~~~~~~~~~- 114 (340)
..|++|..+|.+.+|..+.+. .+..+.. + ..+..+.-++... .+++||.. ..+.+||++..+.+..-+.-
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-G-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeec-C-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence 368899999999999988543 2223332 3 4566666666444 55668887 78999999988655442211
Q ss_pred --------CCCeeEEEEccC--CCEEEEecCc--EEEEECCCC-ceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEE
Q 036605 115 --------EKPISSSAFLCE--EKIFALASSE--VRILSLENG-EEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQ 181 (340)
Q Consensus 115 --------~~~i~~l~~~~~--~~~l~~~~~~--i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~ 181 (340)
.-.++++.|-+. ...++++.+. +++||.+.+ +++..|.....+++++...|++++++++.. -+.+.
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~ 272 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLA 272 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc-cchhh
Confidence 112467788877 6777776554 999999876 456788878899999999999999999777 89999
Q ss_pred EEEccCCCCCccCC-ceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 182 VWRCDISSKTVNKG-PALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 182 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.||++ .+..... +. .+......+.+ +|.+.++++++-|..|+|+|+.+.+.+.
T Consensus 273 ~FD~r--~~kl~g~~~k-g~tGsirsih~-----hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 273 KFDLR--GGKLLGCGLK-GITGSIRSIHC-----HPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred eeccc--CceeeccccC-CccCCcceEEE-----cCCCceEEeeccceeEEEeecccchhhh
Confidence 99984 4333222 22 11122233333 7888999999999999999999955544
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-10 Score=102.61 Aligned_cols=203 Identities=12% Similarity=0.047 Sum_probs=121.6
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCC--CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC-----
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSN--GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT----- 93 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~----- 93 (340)
...+..-+|||||++ ..++++...+ ..|++.++.+++.. .+.. ..+.....+|+|||+.|+..+.
T Consensus 184 ~~~~~sP~wSPDG~~------~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~ 255 (428)
T PRK01029 184 HSLSITPTWMHIGSG------FPYLYVSYKLGVPKIFLGSLENPAGK-KILA-LQGNQLMPTFSPRKKLLAFISDRYGNP 255 (428)
T ss_pred CCCcccceEccCCCc------eEEEEEEccCCCceEEEEECCCCCce-Eeec-CCCCccceEECCCCCEEEEEECCCCCc
Confidence 345667799999860 0022244444 46888898887643 3443 4556667899999998877553
Q ss_pred CCcEEEEeCCCC---eEEEEeecCCCCeeEEEEccCCCEEEEec---Cc--EEEEECCC-CceeEEeecCCCCeEEEEEC
Q 036605 94 NGMASEMKSEMG---EVIREFKASEKPISSSAFLCEEKIFALAS---SE--VRILSLEN-GEEVLKFSDDVGPLQYVSAS 164 (340)
Q Consensus 94 dg~i~~wd~~~~---~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~~--i~i~d~~~-~~~~~~~~~~~~~v~~~~~s 164 (340)
+..+..|++..+ ................+|+|||+.|+..+ +. |+++++.. +.....+..+...+....|+
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS 335 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence 223444776653 33222322223446789999999876532 22 66666643 23344455555567789999
Q ss_pred CCCCEEEEEEcCC--CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeC---CCcEEEEECCCCC
Q 036605 165 DGAKIIITAGYGE--KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAE---SGVAYSWDLKTVS 239 (340)
Q Consensus 165 ~~~~~l~s~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~---dg~i~vwd~~~~~ 239 (340)
|||++|+..+..+ ..|.+||+ .+++.. .+. ......... .| +|||..|+..+. .+.|+++++..++
T Consensus 336 PDG~~Laf~~~~~g~~~I~v~dl--~~g~~~-~Lt---~~~~~~~~p--~w-SpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 336 PDGKKIAFCSVIKGVRQICVYDL--ATGRDY-QLT---TSPENKESP--SW-AIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred CCCCEEEEEEcCCCCcEEEEEEC--CCCCeE-Ecc---CCCCCccce--EE-CCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 9999998866533 36888887 444321 111 111111122 45 889988875443 3468888887654
Q ss_pred c
Q 036605 240 Q 240 (340)
Q Consensus 240 ~ 240 (340)
.
T Consensus 407 ~ 407 (428)
T PRK01029 407 T 407 (428)
T ss_pred E
Confidence 3
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-09 Score=93.50 Aligned_cols=200 Identities=14% Similarity=0.174 Sum_probs=130.9
Q ss_pred CeEEEEeeccccccccccCceEEEEEc-CCCcEEEEEccC-CeeEEE---ec---------CCCCCCeEEEEEecCCCEE
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGT-SNGDILAVDVLT-GEMKWK---ST---------GRHPGGLAGLAFAKKGRSL 88 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~-~dg~i~i~d~~~-~~~~~~---~~---------~~h~~~v~~v~~~~~~~~l 88 (340)
....++++|+++ +|+++. .+|.|.+|++.. |..... +. ........++.|+|++++|
T Consensus 88 ~p~~i~~~~~g~---------~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 88 SPCHIAVDPDGR---------FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp CEEEEEECTTSS---------EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred CcEEEEEecCCC---------EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence 344678888887 676665 689999999987 443222 11 0123457899999999999
Q ss_pred EEEeCC-CcEEEEeCCCCe--EE--EEee-cCCCCeeEEEEccCCCEEEEe---cCcEEEEECC--CCce--eEEeecC-
Q 036605 89 HVVGTN-GMASEMKSEMGE--VI--REFK-ASEKPISSSAFLCEEKIFALA---SSEVRILSLE--NGEE--VLKFSDD- 154 (340)
Q Consensus 89 ~s~~~d-g~i~~wd~~~~~--~~--~~~~-~~~~~i~~l~~~~~~~~l~~~---~~~i~i~d~~--~~~~--~~~~~~~- 154 (340)
++.... ..|.+|++.... .. ..+. ........++|+|+++++++. ++.|.+|++. .+.. +..+...
T Consensus 159 ~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 159 YVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp EEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred EEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 887543 478999887654 32 2222 234567899999999999774 4448888887 4422 2222211
Q ss_pred -----CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeee-cCCCeeeeeecCCCCCCCCEEEEEe-CC
Q 036605 155 -----VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSM-RHSPVAIDCKNSPNGEDGTVILAVA-ES 227 (340)
Q Consensus 155 -----~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~s-~d 227 (340)
......++++|||++|+++....+.|.+|+++..++.....-.... +..|..+.+ +++|.+|+++. .+
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~-----s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF-----SPDGRYLYVANQDS 313 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE------TTSSEEEEEETTT
T ss_pred ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE-----eCCCCEEEEEecCC
Confidence 1257889999999999999888999999999544443322222222 333555555 89999998877 55
Q ss_pred CcEEEEECC
Q 036605 228 GVAYSWDLK 236 (340)
Q Consensus 228 g~i~vwd~~ 236 (340)
+.|.+|++.
T Consensus 314 ~~v~vf~~d 322 (345)
T PF10282_consen 314 NTVSVFDID 322 (345)
T ss_dssp TEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 689999764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=106.72 Aligned_cols=168 Identities=16% Similarity=0.190 Sum_probs=134.4
Q ss_pred cCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-----CCCCC--
Q 036605 3 STNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-----RHPGG-- 75 (340)
Q Consensus 3 d~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-----~h~~~-- 75 (340)
|++.|+.+..|. .....++++..++-.. +|++|+.+|.|..||........++.. .|.+.
T Consensus 161 NLEqGrfL~P~~----~~~~~lN~v~in~~hg---------Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~ 227 (703)
T KOG2321|consen 161 NLEQGRFLNPFE----TDSGELNVVSINEEHG---------LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA 227 (703)
T ss_pred Eccccccccccc----cccccceeeeecCccc---------eEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence 567777777666 4558899999999888 999999999999999988765555432 14443
Q ss_pred ---eEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEee-cCCCCeeEEEEccC--CCEEEEecCc-EEEEECCCCcee
Q 036605 76 ---LAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK-ASEKPISSSAFLCE--EKIFALASSE-VRILSLENGEEV 148 (340)
Q Consensus 76 ---v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~l~~~~~--~~~l~~~~~~-i~i~d~~~~~~~ 148 (340)
|+++.|+.+|-.+++|..+|.|.+||+++.+++..-. ....+|..+.|.+. +..+++++.. ++|||-.+|+..
T Consensus 228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPM 307 (703)
T ss_pred cCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCce
Confidence 9999999989999999999999999999988765432 33457888998775 5678888877 999999999887
Q ss_pred EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 149 LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 149 ~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
..+.. ...+..+++-|++-.++++.. +..+..|-+
T Consensus 308 asiEp-t~~lND~C~~p~sGm~f~Ane-~~~m~~yyi 342 (703)
T KOG2321|consen 308 ASIEP-TSDLNDFCFVPGSGMFFTANE-SSKMHTYYI 342 (703)
T ss_pred eeccc-cCCcCceeeecCCceEEEecC-CCcceeEEc
Confidence 77653 456899999999888888666 777777766
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-11 Score=103.26 Aligned_cols=218 Identities=15% Similarity=0.184 Sum_probs=143.2
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCC--------------------------
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGR-------------------------- 71 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-------------------------- 71 (340)
..|.+.|..+.|...|. .|++|+.|..|.+||...+.....+..+
T Consensus 139 ~~H~GcVntV~FN~~Gd---------~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGD---------VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred cCCCCccceeeecccCc---------eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence 38999999999999998 8999999999999998776655554333
Q ss_pred ---------------------CCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCeEEEEee---cCCC---CeeEEEE
Q 036605 72 ---------------------HPGGLAGLAFAKKG-RSLHVVGTNGMASEMKSEMGEVIREFK---ASEK---PISSSAF 123 (340)
Q Consensus 72 ---------------------h~~~v~~v~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~---~i~~l~~ 123 (340)
|.+.|.-++.-|+. ..|++++.|+.+.-+|++++.+...+. .+.. ..+.++.
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 44555555555533 346667777777777776665433332 2222 4678888
Q ss_pred ccCCCE-EEEecCc--EEEEECCCCc------eeEEeec------CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCC
Q 036605 124 LCEEKI-FALASSE--VRILSLENGE------EVLKFSD------DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDIS 188 (340)
Q Consensus 124 ~~~~~~-l~~~~~~--i~i~d~~~~~------~~~~~~~------~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~ 188 (340)
.|...+ +++++.+ +++||.+.-. .+.+|.. ....|++++|+.++.-|+++-. |-.|++|.-...
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~IYLF~~~~~ 368 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDIYLFNKSMG 368 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-ccceEEeccccc
Confidence 887764 4555555 8999876422 2233322 2357899999988777777555 899999965332
Q ss_pred CCCccCCce--------eeecCCCee-eeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 189 SKTVNKGPA--------LSMRHSPVA-IDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 189 ~~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
.+...-... ...+|...- +.-...| .|...|+++|+.-|.|.||+-.+++.+..++.
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFf-GPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFF-GPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeec-cCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 231111000 011333221 2222334 89999999999999999999999888876666
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-11 Score=99.51 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=121.8
Q ss_pred ecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC------CeEEEEee-cCCCCeeEEEEccCCCEEEEecCc--EE
Q 036605 68 STGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEM------GEVIREFK-ASEKPISSSAFLCEEKIFALASSE--VR 138 (340)
Q Consensus 68 ~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~------~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~~--i~ 138 (340)
+.+ |.+.|+++.|+.++++|++|+.|..+++|.+.. .+++.... .|...|.|++|....++++++++. |.
T Consensus 52 ~~~-H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 52 VRE-HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhh-hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 344 999999999999999999999999999999753 23444333 345789999999999999997766 88
Q ss_pred EEECCCCceeEEee--cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCC
Q 036605 139 ILSLENGEEVLKFS--DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGE 216 (340)
Q Consensus 139 i~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (340)
+.|+++.+.+..+. ...+.|..+..+|..+.|++... ++.|.+||.+. .... ..+.+.-..+..+..+ -|...
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~-~~~V~~~D~Rd-~~~~-~~~~~~AN~~~~F~t~--~F~P~ 205 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR-AKLVSFIDNRD-RQNP-ISLVLPANSGKNFYTA--EFHPE 205 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEec-CceEEEEeccC-CCCC-CceeeecCCCccceee--eecCC
Confidence 99999998876663 33468999999999888888777 99999999852 2211 1222222233333333 44344
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 036605 217 DGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 217 ~~~~l~~~s~dg~i~vwd~~~ 237 (340)
...+|++.+..|-+-+||...
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred CceeEEeccccCCCCceeecc
Confidence 567788888888899999875
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8e-11 Score=94.53 Aligned_cols=159 Identities=8% Similarity=-0.001 Sum_probs=120.6
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCe---EEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCC-C
Q 036605 72 HPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGE---VIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLEN-G 145 (340)
Q Consensus 72 h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~-~ 145 (340)
..++|+|.+|++|...++.+-....|.+|...... ..+++..|...|+.++|+|..+.+++++.+ -++|.... +
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 34689999999999999999999999999876654 567788999999999999999999886655 99999843 3
Q ss_pred --ceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEE
Q 036605 146 --EEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILA 223 (340)
Q Consensus 146 --~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 223 (340)
++...+.-+....+++.|+|.++.|++++. .+.|.||-+..+..=-..... ...+...+..+ .| +|++-.|++
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg-ar~isVcy~E~ENdWWVsKhi-kkPirStv~sl--dW-hpnnVLlaa 163 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSG-ARLISVCYYEQENDWWVSKHI-KKPIRSTVTSL--DW-HPNNVLLAA 163 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccC-ccEEEEEEEecccceehhhhh-CCccccceeee--ec-cCCcceecc
Confidence 233455667889999999999999999777 899999998322110000000 00112233333 66 899999999
Q ss_pred EeCCCcEEEEEC
Q 036605 224 VAESGVAYSWDL 235 (340)
Q Consensus 224 ~s~dg~i~vwd~ 235 (340)
|+.|+..+||..
T Consensus 164 Gs~D~k~rVfSa 175 (361)
T KOG1523|consen 164 GSTDGKCRVFSA 175 (361)
T ss_pred cccCcceeEEEE
Confidence 999999999965
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-10 Score=99.92 Aligned_cols=211 Identities=15% Similarity=0.152 Sum_probs=143.6
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC----------------------------
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG---------------------------- 70 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---------------------------- 70 (340)
.+....+.|..+|||+ -++|+|..--.|++||+.+-.+. |..
T Consensus 49 e~p~ast~ik~s~DGq--------Y~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~I 118 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQ--------YLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTI 118 (703)
T ss_pred CCccccceeEecCCCc--------EEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCcee
Confidence 5778889999999995 16778999999999998754321 111
Q ss_pred -------CC-C----CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--
Q 036605 71 -------RH-P----GGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE-- 136 (340)
Q Consensus 71 -------~h-~----~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~-- 136 (340)
.| . ..-..++++.-..-|+.++....|+-++++.|..+..|.....+++++.+++-..+|++|+.+
T Consensus 119 efHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 119 EFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred eehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCce
Confidence 00 0 011233444334457777777889999999999998888888899999999998888886644
Q ss_pred EEEEECCCCceeEEe------ecCCC-----CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCe
Q 036605 137 VRILSLENGEEVLKF------SDDVG-----PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPV 205 (340)
Q Consensus 137 i~i~d~~~~~~~~~~------~~~~~-----~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 205 (340)
|-.||.++...+..+ ..|++ .|+++.|+.+|-.+.+|.. +|.+.|||++....-..... ...-.
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-~G~v~iyDLRa~~pl~~kdh----~~e~p 273 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-TGSVLIYDLRASKPLLVKDH----GYELP 273 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc-CCcEEEEEcccCCceeeccc----CCccc
Confidence 999999887655444 23443 3999999999988888777 99999999963322111111 11222
Q ss_pred eeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 206 AIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
+..+ .|...++.-.+.......++|||-.+++....+.|
T Consensus 274 i~~l--~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 274 IKKL--DWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred eeee--cccccCCCceEEecchHHhhhcccccCCceeeccc
Confidence 2223 44222333333334455689999999887776666
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=111.42 Aligned_cols=138 Identities=16% Similarity=0.277 Sum_probs=117.3
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEE-EeecCCCCeeEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIR-EFKASEKPISSSA 122 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~l~ 122 (340)
++++|+.-+.|.+|+....+....+.+ |.+.|..+.|+-||.+++++++|..+++|++.+++... ..-+|...+..+.
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~~l~G-HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPIRLKG-HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred EEEeccccccEEEEeccccCCcceecc-cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence 799999999999999885444446777 99999999999999999999999999999999988766 5567999999999
Q ss_pred EccCCCEEEEecCc--EEEEECCCCceeEEeecCC-CCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 123 FLCEEKIFALASSE--VRILSLENGEEVLKFSDDV-GPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 123 ~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
+.|. .+++++.+ .++|+.. ++.+..+..|. ..+..++..++...+++++. |+.+++|++.
T Consensus 226 ~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~-Ds~lk~~~l~ 288 (967)
T KOG0974|consen 226 FLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGN-DSTLKLWDLN 288 (967)
T ss_pred eccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeecc-Ccchhhhhhh
Confidence 9998 77776666 8999654 44555777776 56889999999888888888 9999999983
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-09 Score=87.08 Aligned_cols=196 Identities=12% Similarity=0.158 Sum_probs=134.2
Q ss_pred EEEEeeccccccccccCceEEEEEc-CCCcEEEEEccC-CeeEEE--ecCCCCCC----------eEEEEEecCCCEEEE
Q 036605 25 SCLACGFVGKKRRKERGTLLLALGT-SNGDILAVDVLT-GEMKWK--STGRHPGG----------LAGLAFAKKGRSLHV 90 (340)
Q Consensus 25 ~~l~~sp~~~~~~~~~~~~~l~~g~-~dg~i~i~d~~~-~~~~~~--~~~~h~~~----------v~~v~~~~~~~~l~s 90 (340)
+-++++++++ +|+++. ..|.|.++-+.. |.+... ... |.+. +....|.|++++|++
T Consensus 92 ~yvsvd~~g~---------~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v 161 (346)
T COG2706 92 CYVSVDEDGR---------FVFVANYHSGSVSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSANFTPDGRYLVV 161 (346)
T ss_pred eEEEECCCCC---------EEEEEEccCceEEEEEcccCCccccceeeee-cCCCCCCccccCCccceeeeCCCCCEEEE
Confidence 6788899998 777765 458999999865 442221 111 5544 888899999999999
Q ss_pred EeCC-CcEEEEeCCCCeEEEE----eecCCCCeeEEEEccCCCEEEE---ecCcEEEEECCCC-ceeEEeecC-------
Q 036605 91 VGTN-GMASEMKSEMGEVIRE----FKASEKPISSSAFLCEEKIFAL---ASSEVRILSLENG-EEVLKFSDD------- 154 (340)
Q Consensus 91 ~~~d-g~i~~wd~~~~~~~~~----~~~~~~~i~~l~~~~~~~~l~~---~~~~i~i~d~~~~-~~~~~~~~~------- 154 (340)
++-. -.|.+|++..|..... + ........|.|+|++++..+ -+++|-+|..... ..+..++.+
T Consensus 162 ~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 162 PDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred eecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 8643 3899999998764322 2 23456689999999999876 4556888887663 223222211
Q ss_pred --CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCc-eeeecCCCeeeeeecCCCCCCCCEEEEEeCCC-cE
Q 036605 155 --VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGP-ALSMRHSPVAIDCKNSPNGEDGTVILAVAESG-VA 230 (340)
Q Consensus 155 --~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg-~i 230 (340)
......+.+++||++|+++......|.+|.++..++...... ....+..|..+.+ .+.+.+|+++..++ .|
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i-----~~~g~~Liaa~q~sd~i 315 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNI-----NPSGRFLIAANQKSDNI 315 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcccee-----CCCCCEEEEEccCCCcE
Confidence 245678899999999999888888999999975544321111 1112333555555 78889998887764 58
Q ss_pred EEEECC
Q 036605 231 YSWDLK 236 (340)
Q Consensus 231 ~vwd~~ 236 (340)
.+|...
T Consensus 316 ~vf~~d 321 (346)
T COG2706 316 TVFERD 321 (346)
T ss_pred EEEEEc
Confidence 888654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=117.94 Aligned_cols=193 Identities=12% Similarity=0.149 Sum_probs=150.3
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
++-..|.|+.=+|... +.++|+.||.|++|....++.+..+....+..|+.+.|+..|+.+..+..||.+.
T Consensus 2206 ~~v~~v~r~~sHp~~~---------~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDP---------YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred cccCceeeecCCCCCc---------eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCcee
Confidence 4456677777777777 8999999999999999888877777654558999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc-----EEEEECCCC-ceeEEeecCCCCeEEEEECCCCCEEEE
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE-----VRILSLENG-EEVLKFSDDVGPLQYVSASDGAKIIIT 172 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~-----i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s 172 (340)
+|.+. .++...++.|....+.+.|-. ..+++++.. +.+||.--. ..-..-..|.+.++++++.|..+.|++
T Consensus 2277 l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred ecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEe
Confidence 99987 566677888988888888876 455554332 999996322 111222789999999999999999999
Q ss_pred EEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 173 AGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 173 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
||. +|.|++||++ ..+....+. .+ . ...++++|+..|.++||++.....+.
T Consensus 2354 ggr-~G~v~l~D~r--qrql~h~~~--------------~~-~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2354 GGR-KGEVCLFDIR--QRQLRHTFQ--------------AL-D-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred cCC-cCcEEEeehH--HHHHHHHhh--------------hh-h-hhheeeccCcccceEEEEccccchhh
Confidence 888 9999999995 222222221 12 3 45679999999999999998876665
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-09 Score=87.47 Aligned_cols=176 Identities=9% Similarity=0.115 Sum_probs=123.9
Q ss_pred CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC-CCeEEEEeec--CCCCeeEEEEccCCC
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSE-MGEVIREFKA--SEKPISSSAFLCEEK 128 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~--~~~~i~~l~~~~~~~ 128 (340)
..|.|||-...+.+..+. ...+|.++.+.++ .+++. ....|++|... +-+.++.+.. ......+++-+.+..
T Consensus 75 NkviIWDD~k~~~i~el~--f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS--FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEEE--eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 579999966666776766 6779999999854 45543 45689999987 4444554432 233455554444445
Q ss_pred EEEEec---CcEEEEECCCCce--eEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCC
Q 036605 129 IFALAS---SEVRILSLENGEE--VLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHS 203 (340)
Q Consensus 129 ~l~~~~---~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (340)
+|+.-+ |.|.|-|+...+. ...+.+|.+.|.+++++-+|..+++++...-.|+|||. .+++.+..+.-.. ..
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt--~~g~~l~E~RRG~-d~ 226 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDT--EDGTLLQELRRGV-DR 226 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEc--CCCcEeeeeecCC-ch
Confidence 555533 3499999977654 46779999999999999999999998885556899998 5665554433111 11
Q ss_pred CeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 204 PVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
..+..+ .| +|+..+|+++|.-|+++||.+...
T Consensus 227 A~iy~i--aF-Sp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 227 ADIYCI--AF-SPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred heEEEE--Ee-CCCccEEEEEcCCCeEEEEEeecC
Confidence 223333 55 899999999999999999998763
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=107.07 Aligned_cols=180 Identities=16% Similarity=0.073 Sum_probs=138.1
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCe-----EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCe
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGL-----AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPI 118 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v-----~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i 118 (340)
.++.++.+..+.+||...+.....+.. .... .-+-++++.-++++|+.-+.|.+|++...+.-..+.+|.+.|
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~--~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQS--DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCC--CceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 788899999999999998877766653 3222 122345556688888899999999987444334588999999
Q ss_pred eEEEEccCCCEEEEecCc--EEEEECCCCceeE-EeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCC
Q 036605 119 SSSAFLCEEKIFALASSE--VRILSLENGEEVL-KFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKG 195 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~ 195 (340)
.++.++-||+++++.+.+ +++|++.+.+... ..-+|...+..+.|.|+ ++++++. |.+.++|+. .+.+...
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ge-dctcrvW~~---~~~~l~~ 252 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGE-DCTCRVWGV---NGTQLEV 252 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEecc-ceEEEEEec---ccceehh
Confidence 999999999999885544 9999999987775 55689999999999998 8999888 999999986 3333334
Q ss_pred ceeeecCCCe-eeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 196 PALSMRHSPV-AIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
+. +|... +..+ .. +++...+++++.||.+++|++..
T Consensus 253 y~---~h~g~~iw~~--~~-~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 253 YD---EHSGKGIWKI--AV-PIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hh---hhhhcceeEE--EE-cCCceEEEeeccCcchhhhhhhc
Confidence 43 33322 2222 22 67778899999999999999876
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-10 Score=98.32 Aligned_cols=174 Identities=15% Similarity=0.081 Sum_probs=116.3
Q ss_pred CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN---GMASEMKSEMGEVIREFKASEKPISSSAFLCEEK 128 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~ 128 (340)
..|.++|...+. ...+.. +...+...+|+|||+.|+.+..+ ..|++||+.+++... +..+...+.+++|+|+|+
T Consensus 170 ~~l~~~d~~g~~-~~~l~~-~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITR-SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeec-CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 368888876443 445555 66678999999999999887654 479999999886543 333445567789999998
Q ss_pred EEEE-ec----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCe--EEEEEccCCCCCccCCceeeec
Q 036605 129 IFAL-AS----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKH--LQVWRCDISSKTVNKGPALSMR 201 (340)
Q Consensus 129 ~l~~-~~----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~ 201 (340)
.|+. .+ .+|++||+.++.. ..+..+........|+|+|++|+..+..++. |.++++ ..++. ..+. .
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~--~~~~~-~~l~---~ 319 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA--DGGEV-RRLT---F 319 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC--CCCCE-EEee---c
Confidence 7764 22 2399999988743 4444455555678999999998876654444 555555 33322 1111 1
Q ss_pred CCCeeeeeecCCCCCCCCEEEEEeCCC---cEEEEECCCC
Q 036605 202 HSPVAIDCKNSPNGEDGTVILAVAESG---VAYSWDLKTV 238 (340)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~l~~~s~dg---~i~vwd~~~~ 238 (340)
+....... .| ++++.+++.++.++ .|++||+.++
T Consensus 320 ~~~~~~~~--~~-spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 320 RGGYNASP--SW-SPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCCCccCe--EE-CCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 11111122 34 88999999888776 7889998764
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-08 Score=88.56 Aligned_cols=200 Identities=15% Similarity=0.143 Sum_probs=129.9
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcC----CCcEEEEEccCC--ee--EEEecCCCCCCeEEEEEecCCCEEEEEeC
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTS----NGDILAVDVLTG--EM--KWKSTGRHPGGLAGLAFAKKGRSLHVVGT 93 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~----dg~i~i~d~~~~--~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~~~ 93 (340)
...+.|+++|+++ +|++... +|.|..|.+... ++ +.+... .......++++|++++|+++..
T Consensus 37 ~~Ps~l~~~~~~~---------~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany 106 (345)
T PF10282_consen 37 ENPSWLAVSPDGR---------RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANY 106 (345)
T ss_dssp SSECCEEE-TTSS---------EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEET
T ss_pred CCCceEEEEeCCC---------EEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEEc
Confidence 4566788999998 7777665 579999988764 32 222321 2345678999999999999874
Q ss_pred -CCcEEEEeCCC-CeEEEE---ee----------cCCCCeeEEEEccCCCEEEEe---cCcEEEEECCCCce-e---EEe
Q 036605 94 -NGMASEMKSEM-GEVIRE---FK----------ASEKPISSSAFLCEEKIFALA---SSEVRILSLENGEE-V---LKF 151 (340)
Q Consensus 94 -dg~i~~wd~~~-~~~~~~---~~----------~~~~~i~~l~~~~~~~~l~~~---~~~i~i~d~~~~~~-~---~~~ 151 (340)
+|.|.++++.. |..... +. ......+++.++|+++++++. ...|++|++..... + ..+
T Consensus 107 ~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~ 186 (345)
T PF10282_consen 107 GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI 186 (345)
T ss_dssp TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE
T ss_pred cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc
Confidence 79999999986 443322 21 122457899999999998773 33499999876541 2 222
Q ss_pred e-cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeee---cC----CCeeeeeecCCCCCCCCEEEE
Q 036605 152 S-DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSM---RH----SPVAIDCKNSPNGEDGTVILA 223 (340)
Q Consensus 152 ~-~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~l~~ 223 (340)
. ......+.+.|+|++++++.....++.|.+|+++...+.......... .. .+..+.+ +|+|++|++
T Consensus 187 ~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i-----spdg~~lyv 261 (345)
T PF10282_consen 187 KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI-----SPDGRFLYV 261 (345)
T ss_dssp ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE------TTSSEEEE
T ss_pred ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE-----ecCCCEEEE
Confidence 2 233567899999999999998888999999999532332111111110 11 1222333 899999877
Q ss_pred Ee-CCCcEEEEECC
Q 036605 224 VA-ESGVAYSWDLK 236 (340)
Q Consensus 224 ~s-~dg~i~vwd~~ 236 (340)
+. ..+.|.+|++.
T Consensus 262 snr~~~sI~vf~~d 275 (345)
T PF10282_consen 262 SNRGSNSISVFDLD 275 (345)
T ss_dssp EECTTTEEEEEEEC
T ss_pred EeccCCEEEEEEEe
Confidence 66 45679999984
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-09 Score=93.66 Aligned_cols=206 Identities=16% Similarity=0.195 Sum_probs=131.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE-EEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK-WKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~h~~~v~~v 79 (340)
||+++++.....|... .... +++.|++|.. |++--..+.+++|+..+.+.. +.+ |...|+.+
T Consensus 109 v~~vet~~~~s~~q~k---~Q~~-W~~qfs~dEs----------l~arlv~nev~f~~~~~f~~~~~kl---~~~~i~~f 171 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKK---MQNG-WVPQFSIDES----------LAARLVSNEVQFYDLGSFKTIQHKL---SVSGITML 171 (566)
T ss_pred eeeeccceehhheehh---hhcC-cccccccchh----------hhhhhhcceEEEEecCCccceeeee---eccceeeE
Confidence 5777776555555522 1122 6889999887 555556678999987664322 222 45567777
Q ss_pred EEecCCC--EEEE-----EeCCCcEEEEeCC-------------------------------------------------
Q 036605 80 AFAKKGR--SLHV-----VGTNGMASEMKSE------------------------------------------------- 103 (340)
Q Consensus 80 ~~~~~~~--~l~s-----~~~dg~i~~wd~~------------------------------------------------- 103 (340)
.++|.+. .+++ .|.-..|++|...
T Consensus 172 ~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq 251 (566)
T KOG2315|consen 172 SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQ 251 (566)
T ss_pred EecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccc
Confidence 7776522 2222 1222345555432
Q ss_pred --------CCeEEEEeecCCCCeeEEEEccCCCEEEEecCc----EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEE
Q 036605 104 --------MGEVIREFKASEKPISSSAFLCEEKIFALASSE----VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIII 171 (340)
Q Consensus 104 --------~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~----i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 171 (340)
.......+ ...++|+++.|+|+++.+++.-|- +.|||++.. .+..| ..++-+.+-|+|.|++|+
T Consensus 252 ~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIIL 327 (566)
T ss_pred eEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEE
Confidence 00111111 136789999999999988774443 999998755 55555 356778899999999999
Q ss_pred EEEcC--CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeC------CCcEEEEECCC
Q 036605 172 TAGYG--EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAE------SGVAYSWDLKT 237 (340)
Q Consensus 172 s~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~------dg~i~vwd~~~ 237 (340)
.+|.+ -|.|-|||+ ...+++..+. ...... +.| +|||.++++++. |+.++||+...
T Consensus 328 lAGFGNL~G~mEvwDv--~n~K~i~~~~---a~~tt~----~eW-~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDV--PNRKLIAKFK---AANTTV----FEW-SPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EeecCCCCCceEEEec--cchhhccccc---cCCceE----EEE-cCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 99885 488999999 4555444443 222222 244 999999999875 56689998754
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-09 Score=95.13 Aligned_cols=176 Identities=10% Similarity=0.079 Sum_probs=114.4
Q ss_pred cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCE
Q 036605 53 DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN---GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKI 129 (340)
Q Consensus 53 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 129 (340)
.|.++|...+.. ..+.. +...+...+|+|||+.|+..+.+ ..|.+||+.+++... +...........|+|||+.
T Consensus 180 ~l~~~d~~g~~~-~~l~~-~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQ-SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEec-CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence 477888775543 44444 66788999999999998776643 468999999887543 3333344567899999998
Q ss_pred EEE-e--cC--cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCC
Q 036605 130 FAL-A--SS--EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSP 204 (340)
Q Consensus 130 l~~-~--~~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (340)
++. . ++ +|++||+.+++. ..+..+........|+|||+.|+..+..++...||.++..+++. ..+... ....
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt~~-~~~~ 333 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVTFV-GNYN 333 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecC-CCCc
Confidence 864 2 22 399999998754 44555555667789999999888766645544444433244432 111110 1111
Q ss_pred eeeeeecCCCCCCCCEEEEEeCC-C--cEEEEECCCCC
Q 036605 205 VAIDCKNSPNGEDGTVILAVAES-G--VAYSWDLKTVS 239 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~s~d-g--~i~vwd~~~~~ 239 (340)
.. ..| +|+|.+++..+.+ + .|++||+.+++
T Consensus 334 ~~----~~~-Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 334 AR----PRL-SADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred cc----eEE-CCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 11 134 7899998877654 3 47888987754
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-09 Score=95.61 Aligned_cols=176 Identities=16% Similarity=0.117 Sum_probs=112.4
Q ss_pred cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCE
Q 036605 53 DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN---GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKI 129 (340)
Q Consensus 53 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 129 (340)
.|.++|...... ..+.. +...+....|+|||+.|+..+.+ ..|.+||+.+++.... ..........+|+|||+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLR-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeec-CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCE
Confidence 677778655443 34444 67789999999999988876543 3588999988875332 222334457899999998
Q ss_pred EEEe---cC--cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCC
Q 036605 130 FALA---SS--EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSP 204 (340)
Q Consensus 130 l~~~---~~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (340)
|+.. ++ +|+++|+.+++. ..+..+........|+|||++|+..+..++...||.++..+++.. .+.+ . ..
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~--~-g~ 350 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTF--E-GE 350 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEec--C-CC
Confidence 8652 22 299999988754 455555556678899999999888776555555555443444321 1111 1 11
Q ss_pred eeeeeecCCCCCCCCEEEEEeCC-C--cEEEEECCCCC
Q 036605 205 VAIDCKNSPNGEDGTVILAVAES-G--VAYSWDLKTVS 239 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~s~d-g--~i~vwd~~~~~ 239 (340)
.... ..| +|+|.+++..+.+ + .|.++|+.++.
T Consensus 351 ~~~~--~~~-SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 351 QNLG--GSI-TPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred CCcC--eeE-CCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 1111 144 8999888776553 3 45556766653
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-09 Score=100.74 Aligned_cols=210 Identities=11% Similarity=0.085 Sum_probs=139.7
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-------eEEEecCCCCCCeEEE-EEec-CCC-EEE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-------MKWKSTGRHPGGLAGL-AFAK-KGR-SLH 89 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-------~~~~~~~~h~~~v~~v-~~~~-~~~-~l~ 89 (340)
...++.++.+.+.+. .+|+|+.||.|++.++...+ ..........+.+..+ +|.. .+. .|+
T Consensus 1097 ~~sr~~~vt~~~~~~---------~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lv 1167 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNGD---------QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLV 1167 (1431)
T ss_pred cCCceEEEEeccCCC---------eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEE
Confidence 457889999999888 89999999999999887621 1111122123334333 3433 233 577
Q ss_pred EEeCCCcEEEEeCCCCeEEEEee--cCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEe-ecCCCCeEEEEEC
Q 036605 90 VVGTNGMASEMKSEMGEVIREFK--ASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKF-SDDVGPLQYVSAS 164 (340)
Q Consensus 90 s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~-~~~~~~v~~~~~s 164 (340)
.+..-+.|..||++.......++ ...+.|++++++|.+.+++.|.. .+.+||++-+.++..+ ..+..++..+..+
T Consensus 1168 y~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1168 YATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred EEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEee
Confidence 77788999999998776555443 34567999999999999988654 4999999999888777 3345788888776
Q ss_pred CC---CCEEEEEEc-CCCeEEEEEccCCCCCccCCceee---------ecC-----CCeeeeeecCCCCCCCCEEEEEeC
Q 036605 165 DG---AKIIITAGY-GEKHLQVWRCDISSKTVNKGPALS---------MRH-----SPVAIDCKNSPNGEDGTVILAVAE 226 (340)
Q Consensus 165 ~~---~~~l~s~~~-~d~~i~iwd~~~~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~~~l~~~s~ 226 (340)
|- ....++++. ..+.|.+|++ .++.....+... ... +.......|+. ...+.++++|+.
T Consensus 1248 ~~~~~~S~~vs~~~~~~nevs~wn~--~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~-~~~~~~~ltggs 1324 (1431)
T KOG1240|consen 1248 PTYPQESVSVSAGSSSNNEVSTWNM--ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGV-CEKNGFLLTGGS 1324 (1431)
T ss_pred ccCCCCceEEEecccCCCceeeeec--ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeec-ccCCceeeecCC
Confidence 54 346666666 6889999998 444221111110 001 11122222333 445667899999
Q ss_pred CCcEEEEECCCCCcc
Q 036605 227 SGVAYSWDLKTVSQD 241 (340)
Q Consensus 227 dg~i~vwd~~~~~~~ 241 (340)
|..|+.||....+..
T Consensus 1325 d~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1325 DMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccceeeccCCCcccc
Confidence 999999998775544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-08 Score=84.14 Aligned_cols=219 Identities=12% Similarity=0.100 Sum_probs=140.6
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEc----------CCCcEEEEEccCCeeEEEecC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGT----------SNGDILAVDVLTGEMKWKSTG 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~----------~dg~i~i~d~~~~~~~~~~~~ 70 (340)
|.|..+++++.++... ..+- .+ +|||++ .|+++. .+..|.+||+.+.+.+..+.-
T Consensus 31 ViD~~~~~v~g~i~~G----~~P~-~~-~spDg~---------~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~ 95 (352)
T TIGR02658 31 TIDGEAGRVLGMTDGG----FLPN-PV-VASDGS---------FFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL 95 (352)
T ss_pred EEECCCCEEEEEEEcc----CCCc-ee-ECCCCC---------EEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc
Confidence 3577778888777622 2222 24 999997 555554 478999999999998888763
Q ss_pred CC------CCCeEEEEEecCCCEEEEEe-C-CCcEEEEeCCCCeEEEEeecCCC--------------------------
Q 036605 71 RH------PGGLAGLAFAKKGRSLHVVG-T-NGMASEMKSEMGEVIREFKASEK-------------------------- 116 (340)
Q Consensus 71 ~h------~~~v~~v~~~~~~~~l~s~~-~-dg~i~~wd~~~~~~~~~~~~~~~-------------------------- 116 (340)
.- ......++++|||++|+... . +..|.+.|+.+++.+.++.-...
T Consensus 96 p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d 175 (352)
T TIGR02658 96 PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYG 175 (352)
T ss_pred CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEec
Confidence 11 11234789999999999876 3 68999999998876654321100
Q ss_pred -----CeeEE--------------EEcc-CCCEE-EEecCcEEEEECCCCc-----eeEEee-------cCCCCeEEEEE
Q 036605 117 -----PISSS--------------AFLC-EEKIF-ALASSEVRILSLENGE-----EVLKFS-------DDVGPLQYVSA 163 (340)
Q Consensus 117 -----~i~~l--------------~~~~-~~~~l-~~~~~~i~i~d~~~~~-----~~~~~~-------~~~~~v~~~~~ 163 (340)
..... .+.+ +|+++ ++..+.|.+.|+.... ....+. -..+.+.-+++
T Consensus 176 ~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 176 TKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred CCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 00010 1122 55555 3345668888854332 222221 12334455999
Q ss_pred CCCCCEEEEEEc---------CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCC-EEEEEe-CCCcEEE
Q 036605 164 SDGAKIIITAGY---------GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGT-VILAVA-ESGVAYS 232 (340)
Q Consensus 164 s~~~~~l~s~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~s-~dg~i~v 232 (340)
+++++.++.... ..+.|.++|. .+++....+ ..++.++.+.+ ++|+. +|++.. .++.|.+
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~--~t~kvi~~i--~vG~~~~~iav-----S~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDA--KTGKRLRKI--ELGHEIDSINV-----SQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEEC--CCCeEEEEE--eCCCceeeEEE-----CCCCCeEEEEeCCCCCcEEE
Confidence 999998888432 1257888887 555544333 34666667766 89999 777666 5788999
Q ss_pred EECCCCCccCC
Q 036605 233 WDLKTVSQDEK 243 (340)
Q Consensus 233 wd~~~~~~~~~ 243 (340)
+|..+++.+..
T Consensus 327 iD~~t~k~i~~ 337 (352)
T TIGR02658 327 FDAETGKELSS 337 (352)
T ss_pred EECcCCeEEee
Confidence 99999877763
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-09 Score=95.54 Aligned_cols=154 Identities=17% Similarity=0.159 Sum_probs=97.1
Q ss_pred CCeEEEEeeccccccccccCceEEEEEc-CCC--cE--EEEEccCC--eeEEEecCCCCCCeEEEEEecCCCEEEEEe-C
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGT-SNG--DI--LAVDVLTG--EMKWKSTGRHPGGLAGLAFAKKGRSLHVVG-T 93 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~-~dg--~i--~i~d~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~ 93 (340)
......+|||||+ .|+..+ .+| .+ .+|++..+ .....+...+.+.....+|+|||+.|+..+ .
T Consensus 231 g~~~~p~wSPDG~---------~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~ 301 (428)
T PRK01029 231 GNQLMPTFSPRKK---------LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNK 301 (428)
T ss_pred CCccceEECCCCC---------EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECC
Confidence 3445689999997 566543 233 33 44676653 122333321334456789999999877665 4
Q ss_pred CCc--EEEEeCCC-CeEEEEeecCCCCeeEEEEccCCCEEEEec-----CcEEEEECCCCceeEEeecCCCCeEEEEECC
Q 036605 94 NGM--ASEMKSEM-GEVIREFKASEKPISSSAFLCEEKIFALAS-----SEVRILSLENGEEVLKFSDDVGPLQYVSASD 165 (340)
Q Consensus 94 dg~--i~~wd~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 165 (340)
+|. |.++++.. +.....+..+...+....|+|||+.|+... ..|++||+.+++. ..+......+....|+|
T Consensus 302 ~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSp 380 (428)
T PRK01029 302 DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTSPENKESPSWAI 380 (428)
T ss_pred CCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCCCCCccceEECC
Confidence 564 44445532 223344544455677899999999887632 2399999998865 34433344567899999
Q ss_pred CCCEEEEEEcCC--CeEEEEEc
Q 036605 166 GAKIIITAGYGE--KHLQVWRC 185 (340)
Q Consensus 166 ~~~~l~s~~~~d--~~i~iwd~ 185 (340)
||++|+..+... ..|.++++
T Consensus 381 DG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 381 DSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred CCCEEEEEECCCCCceEEEEEC
Confidence 999888655433 45666776
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-08 Score=88.90 Aligned_cols=190 Identities=12% Similarity=0.047 Sum_probs=118.2
Q ss_pred CeEEEEeeccccccccccCceE-EEEEcC---CCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEE-eC--CC
Q 036605 23 SYSCLACGFVGKKRRKERGTLL-LALGTS---NGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVV-GT--NG 95 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~-l~~g~~---dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~--dg 95 (340)
......|+|||+ . ++..+. +..|+++|+.+++... +.. ..+......|+|||+.|+.. +. +.
T Consensus 189 ~~~~p~wSpDG~---------~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~ 257 (419)
T PRK04043 189 LNIFPKWANKEQ---------TAFYYTSYGERKPTLYKYNLYTGKKEK-IAS-SQGMLVVSDVSKDGSKLLLTMAPKGQP 257 (419)
T ss_pred CeEeEEECCCCC---------cEEEEEEccCCCCEEEEEECCCCcEEE-Eec-CCCcEEeeEECCCCCEEEEEEccCCCc
Confidence 667899999996 3 554333 3579999998886443 333 55667788999999876653 33 35
Q ss_pred cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ecC----cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEE
Q 036605 96 MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-ASS----EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKII 170 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 170 (340)
.|.++|+.++.. ..+..+........|+|||+.++. .++ +|+++|+.+++..+... ... ....|+|||++|
T Consensus 258 ~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~~~~~SPDG~~I 333 (419)
T PRK04043 258 DIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--NNSSVSTYKNYI 333 (419)
T ss_pred EEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--cCceECCCCCEE
Confidence 788889888764 344444433445689999987755 333 39999998876533222 111 124899999999
Q ss_pred EEEEcCC--------CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCC---cEEEEECCC
Q 036605 171 ITAGYGE--------KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESG---VAYSWDLKT 237 (340)
Q Consensus 171 ~s~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg---~i~vwd~~~ 237 (340)
+...... ..|.+.|+ .++.. ..+. .. .. .....| +|||..++..+.++ .+.+.++..
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~--~~g~~-~~LT--~~--~~--~~~p~~-SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLIST--NSDYI-RRLT--AN--GV--NQFPRF-SSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEEC--CCCCe-EECC--CC--CC--cCCeEE-CCCCCEEEEEEccCCcEEEEEEecCC
Confidence 8876633 25666666 44432 1121 01 11 111245 89999887766543 245555543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.6e-10 Score=89.62 Aligned_cols=206 Identities=15% Similarity=0.193 Sum_probs=135.0
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-----eEEEecCCCC------------CCeEEEEEec
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-----MKWKSTGRHP------------GGLAGLAFAK 83 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-----~~~~~~~~h~------------~~v~~v~~~~ 83 (340)
..-+.++.|...|. +||+|..+|.|.+|.-.... ....++. |. ..|+.+.|.+
T Consensus 25 adiis~vef~~~Ge---------~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqs-hepEFDYLkSleieEKinkIrw~~ 94 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE---------RLATGDKGGRVVLFEREKLYKGEYNFQTEFQS-HEPEFDYLKSLEIEEKINKIRWLD 94 (433)
T ss_pred hcceeeEEeecccc---------eEeecCCCCeEEEeecccccccceeeeeeeec-cCcccchhhhhhhhhhhhhceecC
Confidence 35689999999999 99999999999999754322 2222322 33 3688999998
Q ss_pred CCC--EEEEEeCCCcEEEEeCCCCeEE-----------------------------------EE-eecCCCCeeEEEEcc
Q 036605 84 KGR--SLHVVGTNGMASEMKSEMGEVI-----------------------------------RE-FKASEKPISSSAFLC 125 (340)
Q Consensus 84 ~~~--~l~s~~~dg~i~~wd~~~~~~~-----------------------------------~~-~~~~~~~i~~l~~~~ 125 (340)
+++ .++..+.|.+|++|.+...... +. -.+|..-|.+|.++.
T Consensus 95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS 174 (433)
T ss_pred CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence 765 5666788999999987532110 00 124566688899998
Q ss_pred CCCEEEEecCc-EEEEECCCCcee--------------------EEe----------------------e----------
Q 036605 126 EEKIFALASSE-VRILSLENGEEV--------------------LKF----------------------S---------- 152 (340)
Q Consensus 126 ~~~~l~~~~~~-i~i~d~~~~~~~--------------------~~~----------------------~---------- 152 (340)
|+..+++++.- |.+|+++--..- ..| .
T Consensus 175 D~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 175 DKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred ccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 88888887765 777766421000 000 0
Q ss_pred ---------------cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCcee--------e-ecCCCeeee
Q 036605 153 ---------------DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPAL--------S-MRHSPVAID 208 (340)
Q Consensus 153 ---------------~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~--------~-~~~~~~~~~ 208 (340)
.-...|..+.|+++|+|+++-.. -+|++||+++..+........ . .+.....-.
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy--ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY--LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc--ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 00145788999999999998433 799999996554422110000 0 011222233
Q ss_pred eecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 209 CKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 209 ~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
+-|+| +.++.++++|+....+++|++..+.
T Consensus 333 Fec~~-sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 333 FECSW-SGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eEEEE-cCCcceEecccccceEEEecCCCCc
Confidence 44577 7888999999999999999976543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-09 Score=87.47 Aligned_cols=214 Identities=11% Similarity=0.083 Sum_probs=128.9
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAF 81 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 81 (340)
|++...+-...+. .....+..++|||||+ .+|.+..-+-.|.+|.+.+.+... +.. .+..+..++|
T Consensus 76 wsl~Qpew~ckId----eg~agls~~~WSPdgr--------hiL~tseF~lriTVWSL~t~~~~~-~~~-pK~~~kg~~f 141 (447)
T KOG4497|consen 76 WSLVQPEWYCKID----EGQAGLSSISWSPDGR--------HILLTSEFDLRITVWSLNTQKGYL-LPH-PKTNVKGYAF 141 (447)
T ss_pred EEeecceeEEEec----cCCCcceeeeECCCcc--------eEeeeecceeEEEEEEeccceeEE-ecc-cccCceeEEE
Confidence 5554444444444 4567889999999995 177778889999999998876442 232 3345689999
Q ss_pred ecCCCEEEEEeCC------------------------------------CcEEEEeCCCCeEEEEeecCCCCeeEEEEcc
Q 036605 82 AKKGRSLHVVGTN------------------------------------GMASEMKSEMGEVIREFKASEKPISSSAFLC 125 (340)
Q Consensus 82 ~~~~~~l~s~~~d------------------------------------g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~ 125 (340)
+|||++.+.++.- ..+.+||-.-.-.+..+ .-.-.+..++|+|
T Consensus 142 ~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP 220 (447)
T KOG4497|consen 142 HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSP 220 (447)
T ss_pred CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEecc
Confidence 9999987765432 11223321100001111 1124677889999
Q ss_pred CCCEEEEecCc--EEEEECCCCce--------------------------------------------------------
Q 036605 126 EEKIFALASSE--VRILSLENGEE-------------------------------------------------------- 147 (340)
Q Consensus 126 ~~~~l~~~~~~--i~i~d~~~~~~-------------------------------------------------------- 147 (340)
.++++++|+.+ +++.+--+-+.
T Consensus 221 ~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~ 300 (447)
T KOG4497|consen 221 CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQM 300 (447)
T ss_pred ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhh
Confidence 99999887766 43321100000
Q ss_pred ----eEEe------ecCCCCeEEEEECCCCCEEEEEEcC-CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCC
Q 036605 148 ----VLKF------SDDVGPLQYVSASDGAKIIITAGYG-EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGE 216 (340)
Q Consensus 148 ----~~~~------~~~~~~v~~~~~s~~~~~l~s~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (340)
+..+ ......+..++|++|..|+++-.+. -+.+.+||+ ...+....+. ... .+..+ .| .|
T Consensus 301 ~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdl--q~l~l~avLi---Qk~-piraf--~W-dP 371 (447)
T KOG4497|consen 301 TPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDL--QNLKLHAVLI---QKH-PIRAF--EW-DP 371 (447)
T ss_pred cceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEec--hhhhhhhhhh---hcc-ceeEE--Ee-CC
Confidence 0000 0112346778999999888884432 357899998 3433333322 221 22223 44 78
Q ss_pred CCCEEEEEeCCCcEEEEECCCCC
Q 036605 217 DGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 217 ~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
....|+.+....++++|......
T Consensus 372 ~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 372 GRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred CCceEEEEcCCceEEEEcCCCce
Confidence 88888888888889999876543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-09 Score=91.49 Aligned_cols=187 Identities=13% Similarity=0.097 Sum_probs=139.7
Q ss_pred eEEEEEcCCCcEEEEEccCCeeEEEecC--CCCCCeEEEEEe--------------------cCCCEEEEEeCCCcEEEE
Q 036605 43 LLLALGTSNGDILAVDVLTGEMKWKSTG--RHPGGLAGLAFA--------------------KKGRSLHVVGTNGMASEM 100 (340)
Q Consensus 43 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~--~h~~~v~~v~~~--------------------~~~~~l~s~~~dg~i~~w 100 (340)
.++|....||.+++|++..++....+.. .-.+..++..|. .+...++-|...|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 3899999999999999999987776654 123445555553 122356667788999999
Q ss_pred eCCCCeEEEEee--cCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 101 KSEMGEVIREFK--ASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 101 d~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
+...|+....+. .|.+.|.++.++.+-..+.+++.+ +..|+......++.+......+.+++++||+..+++++
T Consensus 86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-- 163 (541)
T KOG4547|consen 86 SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-- 163 (541)
T ss_pred EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--
Confidence 999999888776 577889999999888888886655 88999999999999998888999999999999888843
Q ss_pred CCeEEEEEccCCCCCccCCceeeecCCCeeeeeec--CCCCCCCCEEEEEe-CCCcEEEEECCC
Q 036605 177 EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKN--SPNGEDGTVILAVA-ESGVAYSWDLKT 237 (340)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~s-~dg~i~vwd~~~ 237 (340)
+.|.+||+ ++++....+. +|...+..+.. .+....|.+++++. .+..+.+|-+..
T Consensus 164 -~~ik~~~~--~~kevv~~ft---gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 -RQIKVLDI--ETKEVVITFT---GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -ceEEEEEc--cCceEEEEec---CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 69999999 6777766666 77766655511 11123356666543 344477776554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-08 Score=80.87 Aligned_cols=206 Identities=11% Similarity=0.101 Sum_probs=133.6
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcC---CCcEEEEEccC--CeeEE--EecCCCCCCeEEEEEecCCCEEEEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTS---NGDILAVDVLT--GEMKW--KSTGRHPGGLAGLAFAKKGRSLHVV 91 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~---dg~i~i~d~~~--~~~~~--~~~~~h~~~v~~v~~~~~~~~l~s~ 91 (340)
......+-|+|+|+++ +|.++-. .|.|..|.+.. |++.. .... ...+-+.+++++++++|+++
T Consensus 37 ~~~~nptyl~~~~~~~---------~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-~g~~p~yvsvd~~g~~vf~A 106 (346)
T COG2706 37 AELGNPTYLAVNPDQR---------HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-PGSPPCYVSVDEDGRFVFVA 106 (346)
T ss_pred cccCCCceEEECCCCC---------EEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-CCCCCeEEEECCCCCEEEEE
Confidence 4557788999999998 7777654 47787777764 54322 1111 12233889999999999998
Q ss_pred eCC-CcEEEEeCCC-CeEEEE--eecCCCC----------eeEEEEccCCCEEEEec---CcEEEEECCCCceeEEe---
Q 036605 92 GTN-GMASEMKSEM-GEVIRE--FKASEKP----------ISSSAFLCEEKIFALAS---SEVRILSLENGEEVLKF--- 151 (340)
Q Consensus 92 ~~d-g~i~~wd~~~-~~~~~~--~~~~~~~----------i~~l~~~~~~~~l~~~~---~~i~i~d~~~~~~~~~~--- 151 (340)
... |.|.++.++. |.+... ...|... +....+.|++++|++.+ ..|.+|++..|+....-
T Consensus 107 nY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~ 186 (346)
T COG2706 107 NYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE 186 (346)
T ss_pred EccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc
Confidence 765 8999999865 432211 1223333 78889999999998843 34999999977543111
Q ss_pred ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccC-----CceeeecCCCeeeeeecCCCCCCCCEEEEEeC
Q 036605 152 SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNK-----GPALSMRHSPVAIDCKNSPNGEDGTVILAVAE 226 (340)
Q Consensus 152 ~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~ 226 (340)
.......+.|.|+|++++.+....-+++|.+|..+...++... .+.-.+....+..++ .. +++|++|.+...
T Consensus 187 v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI--hi-s~dGrFLYasNR 263 (346)
T COG2706 187 VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI--HI-SPDGRFLYASNR 263 (346)
T ss_pred cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE--EE-CCCCCEEEEecC
Confidence 1223556899999999999998888999999999643232111 111111112222222 22 899999988754
Q ss_pred C-CcEEEEECCC
Q 036605 227 S-GVAYSWDLKT 237 (340)
Q Consensus 227 d-g~i~vwd~~~ 237 (340)
. ..|.+|.+..
T Consensus 264 g~dsI~~f~V~~ 275 (346)
T COG2706 264 GHDSIAVFSVDP 275 (346)
T ss_pred CCCeEEEEEEcC
Confidence 2 3577777654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.1e-08 Score=79.71 Aligned_cols=178 Identities=15% Similarity=0.145 Sum_probs=126.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcC-----CCcEEEEEcc-CCeeEEEecCCCCC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTS-----NGDILAVDVL-TGEMKWKSTGRHPG 74 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~-----dg~i~i~d~~-~~~~~~~~~~~h~~ 74 (340)
+||+.+|+....+..+.+.|-.. --.||+||+ +|++.-+ .|.|-|||.. +-+.+..+.. |.-
T Consensus 32 v~D~~~g~~~~~~~a~~gRHFyG--Hg~fs~dG~---------~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s-~GI 99 (305)
T PF07433_consen 32 VFDCRTGQLLQRLWAPPGRHFYG--HGVFSPDGR---------LLYTTENDYETGRGVIGVYDAARGYRRIGEFPS-HGI 99 (305)
T ss_pred EEEcCCCceeeEEcCCCCCEEec--CEEEcCCCC---------EEEEeccccCCCcEEEEEEECcCCcEEEeEecC-CCc
Confidence 57899999887777553333222 256999999 7887544 4899999998 5556667766 655
Q ss_pred CeEEEEEecCCCEEEEEeC------------------CCcEEEEeCCCCeEEEEee----cCCCCeeEEEEccCCCEEEE
Q 036605 75 GLAGLAFAKKGRSLHVVGT------------------NGMASEMKSEMGEVIREFK----ASEKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~------------------dg~i~~wd~~~~~~~~~~~----~~~~~i~~l~~~~~~~~l~~ 132 (340)
.-..+.+.|||+.|+.+.. +..+...|..+|+.+.+.. .|...|..+++.++|..++.
T Consensus 100 GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a 179 (305)
T PF07433_consen 100 GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFA 179 (305)
T ss_pred ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEE
Confidence 5678889999987776421 2356777888898887743 36778999999999988876
Q ss_pred ecCc---------EEEEECCCCceeEEe-------ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccC
Q 036605 133 ASSE---------VRILSLENGEEVLKF-------SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNK 194 (340)
Q Consensus 133 ~~~~---------i~i~d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~ 194 (340)
...+ +-+++... .+..+ ..-.+.+-+|++++++..+++++-..+.+.+||. .++....
T Consensus 180 ~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~--~tg~~~~ 253 (305)
T PF07433_consen 180 MQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA--ATGRLLG 253 (305)
T ss_pred EecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC--CCCCEee
Confidence 3222 55555433 23222 2234789999999999999888887999999998 5655543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=95.97 Aligned_cols=156 Identities=12% Similarity=0.047 Sum_probs=117.5
Q ss_pred CCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCee--------EEEecCCCCCCeEEEEEecCCCEEEE
Q 036605 20 PVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEM--------KWKSTGRHPGGLAGLAFAKKGRSLHV 90 (340)
Q Consensus 20 ~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--------~~~~~~~h~~~v~~v~~~~~~~~l~s 90 (340)
....+++++|.|.. . .+++|+..|.|..-+....+. +..+. .|.+.|+++.++|=+..++.
T Consensus 346 ~~~~~t~~~F~~~~p~---------~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~-~h~g~v~~v~~nPF~~k~fl 415 (555)
T KOG1587|consen 346 KAVGATSLKFEPTDPN---------HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI-THIGPVYAVSRNPFYPKNFL 415 (555)
T ss_pred cccceeeEeeccCCCc---------eEEEEcCCcEEEEEeccCCccccccccccccccc-ccCcceEeeecCCCccceee
Confidence 34678999999877 5 799999999998844332221 11233 38899999999997665555
Q ss_pred EeCCCcEEEEeCC-CCeEEEEeecCCCCeeEEEEccCCCEE-EE--ecCcEEEEECCCC--ceeEEeecCCCCeEEEEEC
Q 036605 91 VGTNGMASEMKSE-MGEVIREFKASEKPISSSAFLCEEKIF-AL--ASSEVRILSLENG--EEVLKFSDDVGPLQYVSAS 164 (340)
Q Consensus 91 ~~~dg~i~~wd~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~--~~~~i~i~d~~~~--~~~~~~~~~~~~v~~~~~s 164 (340)
.+.|-.+++|.-. ...++..+..+...+++++|||...-+ ++ ++|.|.+||+... .++.+...+....+.+.|+
T Consensus 416 s~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s 495 (555)
T KOG1587|consen 416 SVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWS 495 (555)
T ss_pred eeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecC
Confidence 5559999999977 666777777778889999999987655 44 4455999999643 4455555556677788889
Q ss_pred CCCCEEEEEEcCCCeEEEEEcc
Q 036605 165 DGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 165 ~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
+.|+.|+.|.. .|.+.+|++.
T Consensus 496 ~~g~~lavGd~-~G~~~~~~l~ 516 (555)
T KOG1587|consen 496 PNGKLLAVGDA-NGTTHILKLS 516 (555)
T ss_pred CCCcEEEEecC-CCcEEEEEcC
Confidence 99998888766 9999999983
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.3e-09 Score=84.31 Aligned_cols=155 Identities=12% Similarity=0.179 Sum_probs=118.7
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC----CeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCc
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT----GEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGM 96 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~ 96 (340)
..+++++.+.+..+ .|++|-.+|++.-+.+.. ....+.+.. |...|..+-|+-...++++++.|..
T Consensus 68 P~~~~~~~y~~e~~---------~L~vg~~ngtvtefs~sedfnkm~~~r~~~~-h~~~v~~~if~~~~e~V~s~~~dk~ 137 (404)
T KOG1409|consen 68 PSPCSAMEYVSESR---------RLYVGQDNGTVTEFALSEDFNKMTFLKDYLA-HQARVSAIVFSLTHEWVLSTGKDKQ 137 (404)
T ss_pred CCCceEeeeeccce---------EEEEEEecceEEEEEhhhhhhhcchhhhhhh-hhcceeeEEecCCceeEEEeccccc
Confidence 46899999998888 899999999999886543 333444454 8888988888877777777776644
Q ss_pred EEEEeC-----------------------------------------CCCeEEEEeecCCCCeeEEEEccCCCEEEEecC
Q 036605 97 ASEMKS-----------------------------------------EMGEVIREFKASEKPISSSAFLCEEKIFALASS 135 (340)
Q Consensus 97 i~~wd~-----------------------------------------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 135 (340)
+.---. ..-.++.++.+|..++.+++|.|....|+++..
T Consensus 138 ~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~ 217 (404)
T KOG1409|consen 138 FAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS 217 (404)
T ss_pred eEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc
Confidence 322111 111234557789999999999999999988655
Q ss_pred c--EEEEECCCCcee-EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 136 E--VRILSLENGEEV-LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 136 ~--i~i~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
+ +.+||+...+-+ ..+.+|...|..+...+.-+.+++++. ||.|.+|+++
T Consensus 218 d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~e-dg~i~~w~mn 270 (404)
T KOG1409|consen 218 DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGE-DGGIVVWNMN 270 (404)
T ss_pred cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccC-CCeEEEEecc
Confidence 5 999999765544 566889999999999888889999888 9999999984
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-08 Score=80.94 Aligned_cols=150 Identities=15% Similarity=0.071 Sum_probs=108.4
Q ss_pred eEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE--EecCCCCCCeEEEEEec-CCCEEEEEeCCCcEEEE
Q 036605 24 YSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW--KSTGRHPGGLAGLAFAK-KGRSLHVVGTNGMASEM 100 (340)
Q Consensus 24 v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~~w 100 (340)
..++.|++.+. -++++..+|.+.+-+...+.+.. .++. |.-.+....|+. +.+.+++|+.|+.+..|
T Consensus 124 ~lslD~~~~~~---------~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~ 193 (339)
T KOG0280|consen 124 ALSLDISTSGT---------KIFVSDSRGSISGVYETEMVLEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCW 193 (339)
T ss_pred eeEEEeeccCc---------eEEEEcCCCcEEEEecceeeeeecccccc-cceeeeeeecccCCCceEEecCCCceEEEE
Confidence 45788888887 69999999999976655554443 6676 999999999976 44689999999999999
Q ss_pred eCC-CCeEEEE-eecCCCCeeEEEEcc-CCCEEEEecCc--EEEEECCC-CceeEEeecCCCCeEEEEECCCCC-EEEEE
Q 036605 101 KSE-MGEVIRE-FKASEKPISSSAFLC-EEKIFALASSE--VRILSLEN-GEEVLKFSDDVGPLQYVSASDGAK-IIITA 173 (340)
Q Consensus 101 d~~-~~~~~~~-~~~~~~~i~~l~~~~-~~~~l~~~~~~--i~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~ 173 (340)
|++ .++.+.. .+.|...|.+|.-+| .+.++++|+.+ |++||.++ ++++..-. -.+.|+.+..+|.-. .++.+
T Consensus 194 D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~ 272 (339)
T KOG0280|consen 194 DIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAA 272 (339)
T ss_pred EecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHH
Confidence 998 3443333 556788899988776 46788888777 99999984 55554332 347899999988643 22222
Q ss_pred EcCCCeEEEEEc
Q 036605 174 GYGEKHLQVWRC 185 (340)
Q Consensus 174 ~~~d~~i~iwd~ 185 (340)
+. -+-.+|-+.
T Consensus 273 CM-h~G~ki~~~ 283 (339)
T KOG0280|consen 273 CM-HNGAKILDS 283 (339)
T ss_pred HH-hcCceEEEe
Confidence 33 344556665
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-08 Score=87.23 Aligned_cols=127 Identities=16% Similarity=0.277 Sum_probs=98.4
Q ss_pred CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe--CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCE
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG--TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKI 129 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 129 (340)
.++++++++.......+. -.++|.++.|+|+++.++++- .-..+.++|++ +.++..+ ..++-.++-|+|.|++
T Consensus 251 q~Lyll~t~g~s~~V~L~--k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL--KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNI 325 (566)
T ss_pred ceEEEEEecCceEEEecC--CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCE
Confidence 368888877434444444 578999999999998776653 34689999986 5666555 4667788999999999
Q ss_pred EEEec-----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC-----CCeEEEEEc
Q 036605 130 FALAS-----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG-----EKHLQVWRC 185 (340)
Q Consensus 130 l~~~~-----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~-----d~~i~iwd~ 185 (340)
++.++ |+|-+||..+.+.+.++.. ...+-..|+|||.+|+++... |+.++||+.
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 97754 4499999999888887764 344668999999999997764 788999997
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.9e-08 Score=82.49 Aligned_cols=145 Identities=12% Similarity=0.070 Sum_probs=114.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCC-cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNG-DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
++...|.-..+.-+++ -++.|..|| .+-|||..+++.. ++.. .-+.|.++..+++|+.++.+.....+
T Consensus 357 ~~~~~VrY~r~~~~~e---------~~vigt~dgD~l~iyd~~~~e~k-r~e~-~lg~I~av~vs~dGK~~vvaNdr~el 425 (668)
T COG4946 357 GKKGGVRYRRIQVDPE---------GDVIGTNDGDKLGIYDKDGGEVK-RIEK-DLGNIEAVKVSPDGKKVVVANDRFEL 425 (668)
T ss_pred CCCCceEEEEEccCCc---------ceEEeccCCceEEEEecCCceEE-EeeC-CccceEEEEEcCCCcEEEEEcCceEE
Confidence 3555677667766665 689999999 8999999988644 5555 67899999999999999998888999
Q ss_pred EEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec------CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEE
Q 036605 98 SEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS------SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIII 171 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 171 (340)
.+.|+.+|+....=+...+-|+.++|+|+++++|-+- ..|++||+.+++.. ..+...+.-.+.+|.||+++|.
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy-~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY-DVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE-EecCCcccccCcccCCCCcEEE
Confidence 9999999997666556667899999999999998742 23999999988654 3333344446679999999987
Q ss_pred EEEc
Q 036605 172 TAGY 175 (340)
Q Consensus 172 s~~~ 175 (340)
.-+.
T Consensus 505 fLs~ 508 (668)
T COG4946 505 FLSA 508 (668)
T ss_pred EEec
Confidence 7544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=84.87 Aligned_cols=159 Identities=17% Similarity=0.180 Sum_probs=104.9
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE----EEEeecCCCCeeEEEEccCCCEEEE--ecCc---EEEEECCCC
Q 036605 75 GLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEV----IREFKASEKPISSSAFLCEEKIFAL--ASSE---VRILSLENG 145 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~i~~l~~~~~~~~l~~--~~~~---i~i~d~~~~ 145 (340)
....+..++++++|+.+..+....+++...... +.... -...-+++.+..+...... ..++ +.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 345556677888888888887776776654332 11221 1223345555555544443 3344 555555444
Q ss_pred ceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEe
Q 036605 146 EEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVA 225 (340)
Q Consensus 146 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s 225 (340)
......+|...+..++|+||+++|+++.. |..|+|-.++ .. ...-.+.++|...+-.+ +. -++..|++++
T Consensus 143 -~~~~~lGhvSml~dVavS~D~~~IitaDR-DEkIRvs~yp--a~--f~IesfclGH~eFVS~i--sl--~~~~~LlS~s 212 (390)
T KOG3914|consen 143 -RCEPILGHVSMLLDVAVSPDDQFIITADR-DEKIRVSRYP--AT--FVIESFCLGHKEFVSTI--SL--TDNYLLLSGS 212 (390)
T ss_pred -CcchhhhhhhhhheeeecCCCCEEEEecC-CceEEEEecC--cc--cchhhhccccHhheeee--ee--ccCceeeecC
Confidence 33455789999999999999999999666 9999998772 22 23334455777766655 33 3445689999
Q ss_pred CCCcEEEEECCCCCccCCC
Q 036605 226 ESGVAYSWDLKTVSQDEKT 244 (340)
Q Consensus 226 ~dg~i~vwd~~~~~~~~~~ 244 (340)
.|++|++||+.+++.+..+
T Consensus 213 GD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CCCcEEEEecccCCccccc
Confidence 9999999999998887643
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-07 Score=74.66 Aligned_cols=211 Identities=17% Similarity=0.199 Sum_probs=126.2
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAF 81 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 81 (340)
||+.+|+.+-.+... .......+. ..+++. .+++++.++.|+.||..+|+.++++.. .+.+....
T Consensus 8 ~d~~tG~~~W~~~~~--~~~~~~~~~-~~~~~~---------~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~- 72 (238)
T PF13360_consen 8 LDPRTGKELWSYDLG--PGIGGPVAT-AVPDGG---------RVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAP- 72 (238)
T ss_dssp EETTTTEEEEEEECS--SSCSSEEET-EEEETT---------EEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGE-
T ss_pred EECCCCCEEEEEECC--CCCCCccce-EEEeCC---------EEEEEcCCCEEEEEECCCCCEEEEeec--ccccccee-
Confidence 688889888766521 101222222 233454 577888999999999999999988874 22221111
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCeEEEEe-ecCCC---CeeEEEEccCCCEEEE-e-cCcEEEEECCCCceeEEeecCC
Q 036605 82 AKKGRSLHVVGTNGMASEMKSEMGEVIREF-KASEK---PISSSAFLCEEKIFAL-A-SSEVRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 82 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~---~i~~l~~~~~~~~l~~-~-~~~i~i~d~~~~~~~~~~~~~~ 155 (340)
...+..++.++.++.+..+|..+|+.+... ..... ..........+..+++ . ++.|..+|+++|+.+..+....
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 224667777788889999999999998874 32211 1112222223555544 3 5669999999999887775533
Q ss_pred CC----------eEEEEECCCCCEEEEEEcCCCe-EEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEE
Q 036605 156 GP----------LQYVSASDGAKIIITAGYGEKH-LQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAV 224 (340)
Q Consensus 156 ~~----------v~~~~~s~~~~~l~s~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 224 (340)
.. +..-....++ .++.+.. ++. +.+ |+ .+++.. ... . ...... .. ...+..|+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~g~~~~~-d~--~tg~~~--w~~--~-~~~~~~---~~-~~~~~~l~~~ 218 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDG-RVYVSSG-DGRVVAV-DL--ATGEKL--WSK--P-ISGIYS---LP-SVDGGTLYVT 218 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTT-EEEEECC-TSSEEEE-ET--TTTEEE--EEE--C-SS-ECE---CE-ECCCTEEEEE
T ss_pred CCCCcceeeecccccceEEECC-EEEEEcC-CCeEEEE-EC--CCCCEE--EEe--c-CCCccC---Cc-eeeCCEEEEE
Confidence 22 1222223344 5555555 664 555 87 455422 111 1 111111 11 3566778877
Q ss_pred eCCCcEEEEECCCCCcc
Q 036605 225 AESGVAYSWDLKTVSQD 241 (340)
Q Consensus 225 s~dg~i~vwd~~~~~~~ 241 (340)
+.++.|..||+.+++.+
T Consensus 219 ~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ETTTEEEEEETTTTEEE
T ss_pred eCCCEEEEEECCCCCEE
Confidence 89999999999998754
|
... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=94.42 Aligned_cols=182 Identities=13% Similarity=0.154 Sum_probs=128.1
Q ss_pred EEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-------CeEEEEeecCCCCeeEEEEccCCCEEEEecCcE
Q 036605 65 KWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEM-------GEVIREFKASEKPISSSAFLCEEKIFALASSEV 137 (340)
Q Consensus 65 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~-------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~i 137 (340)
++.+.+ |+..|..++--.+.+.+++++.|.+|++|.++. .....++..|+.+|.++.|-.+.++++++++-|
T Consensus 728 L~nf~G-H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~gi 806 (1034)
T KOG4190|consen 728 LCNFTG-HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGI 806 (1034)
T ss_pred eecccC-cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcc
Confidence 345566 999999888777888999999999999999863 224456778999999999999999999999999
Q ss_pred EEEECCCCceeEEe--ecCCCCeEEEEECC--CCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCC-eeeeeecC
Q 036605 138 RILSLENGEEVLKF--SDDVGPLQYVSASD--GAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSP-VAIDCKNS 212 (340)
Q Consensus 138 ~i~d~~~~~~~~~~--~~~~~~v~~~~~s~--~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 212 (340)
++||.--++.+... ....+.+..+..-+ +...+++++....+|+++|.+ .++....+.......+ ....+. .
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR--sce~~~E~kVcna~~Pna~~R~i-a 883 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR--SCEWTCELKVCNAPGPNALTRAI-A 883 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc--cccceeeEEeccCCCCchheeEE-E
Confidence 99998777666433 11223334444333 444555554558999999984 4443333222211111 111110 1
Q ss_pred CCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCCceEEE
Q 036605 213 PNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNPAKITV 251 (340)
Q Consensus 213 ~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p~~i~~ 251 (340)
. .+.|.+++++-..|+|.+.|.++++.+...+|....+
T Consensus 884 V-a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdl 921 (1034)
T KOG4190|consen 884 V-ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDL 921 (1034)
T ss_pred e-ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchh
Confidence 2 6889999999999999999999999888888844433
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-07 Score=75.47 Aligned_cols=182 Identities=12% Similarity=0.041 Sum_probs=117.5
Q ss_pred CCcEEEEEccCCeeEE--EecCCCCCCeEEEEEec---CCC-EEEEEeCCCcEEEEeCCCCeEEEEeecCC---C---Ce
Q 036605 51 NGDILAVDVLTGEMKW--KSTGRHPGGLAGLAFAK---KGR-SLHVVGTNGMASEMKSEMGEVIREFKASE---K---PI 118 (340)
Q Consensus 51 dg~i~i~d~~~~~~~~--~~~~~h~~~v~~v~~~~---~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---~---~i 118 (340)
.|.+.+|++...+... .++..-...+..+.|.. +|. .|+-+..+|.|.++..........+.+-. . ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4788999988766433 22222345677888864 344 45666778999998766544444443221 1 13
Q ss_pred eEEEEccCCCEEEEecCc--EEEEECCCCc--eeEEeecCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEEccCCCCCcc
Q 036605 119 SSSAFLCEEKIFALASSE--VRILSLENGE--EVLKFSDDVGPLQYVSASDGAK-IIITAGYGEKHLQVWRCDISSKTVN 193 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~~~~--i~i~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~~d~~i~iwd~~~~~~~~~ 193 (340)
-++.|++.+..+++.+.+ +.+-+..... .++.++.|....+...|+.... .+++|+. |+.+..||+|.+. +.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgD-D~~l~~~D~R~p~-~~- 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGD-DGSLSCWDIRIPK-TF- 201 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCC-CceEEEEEecCCc-ce-
Confidence 467788888888775544 5544433332 3357889999999999976655 4555555 9999999997332 11
Q ss_pred CCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 194 KGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
...-...|...+..+.+. .|.+.++++|+.|-.|++||.++.
T Consensus 202 -i~~n~kvH~~GV~SI~ss--~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 202 -IWHNSKVHTSGVVSIYSS--PPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred -eeecceeeecceEEEecC--CCCCceEEEeccccceeeeehhcc
Confidence 111122455555555333 478899999999999999999864
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.1e-07 Score=79.47 Aligned_cols=174 Identities=10% Similarity=-0.009 Sum_probs=109.9
Q ss_pred CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCE-EEEEeC---CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCC
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRS-LHVVGT---NGMASEMKSEMGEVIREFKASEKPISSSAFLCEE 127 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~ 127 (340)
..|.+-|..... ...+.. . +.+....|+|||+. ++..+. +..|.++|+.+++..... ..........|+|||
T Consensus 169 ~~l~~~d~dg~~-~~~~~~-~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVK-G-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEcc-C-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCC
Confidence 466666655443 444443 3 37789999999984 554443 357999999988765443 344556678899999
Q ss_pred CEEEE-e----cCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecC
Q 036605 128 KIFAL-A----SSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRH 202 (340)
Q Consensus 128 ~~l~~-~----~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 202 (340)
+.++. . ..+|+++|+.+++ ...+..+........|+|||+.|+..+...+.-.||-++..+++... +.. .
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-lt~--~- 319 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-VVF--H- 319 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-Ccc--C-
Confidence 87754 2 2349999998875 44555444434567899999988887765555445544334443322 211 1
Q ss_pred CCeeeeeecCCCCCCCCEEEEEeCC---------CcEEEEECCCCC
Q 036605 203 SPVAIDCKNSPNGEDGTVILAVAES---------GVAYSWDLKTVS 239 (340)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~s~d---------g~i~vwd~~~~~ 239 (340)
..... .| +|+|.+++..+.. ..|++.|+.++.
T Consensus 320 g~~~~----~~-SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 320 GKNNS----SV-STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred CCcCc----eE-CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 11111 34 8999988877654 267888877654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=84.68 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=103.9
Q ss_pred EEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC--CCCCCeEEEEEecCCCEEEEEe---CCCcEEE
Q 036605 25 SCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG--RHPGGLAGLAFAKKGRSLHVVG---TNGMASE 99 (340)
Q Consensus 25 ~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~---~dg~i~~ 99 (340)
.....+|.++ +||++..+....+++........++-. .-...-+++.|..+......+. +...+.+
T Consensus 66 ~~~~~s~~~~---------llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 66 ALVLTSDSGR---------LVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred cccccCCCce---------EEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeee
Confidence 3445567778 999999888877777655432111110 0222334555555555444443 4455566
Q ss_pred EeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEe-ecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 100 MKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKF-SDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 100 wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
|....+... .+-+|-+-++.++++||+++++++|++ |++-.+..--.+..| .+|..-|..++.-++. .|++++.
T Consensus 137 ~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sG- 213 (390)
T KOG3914|consen 137 LSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSG- 213 (390)
T ss_pred ecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCC-
Confidence 665554433 345788899999999999999999998 777666555455555 5799999999998764 4777665
Q ss_pred CCeEEEEEccCCCCCccC
Q 036605 177 EKHLQVWRCDISSKTVNK 194 (340)
Q Consensus 177 d~~i~iwd~~~~~~~~~~ 194 (340)
|++|++||+ .++..+.
T Consensus 214 D~tlr~Wd~--~sgk~L~ 229 (390)
T KOG3914|consen 214 DKTLRLWDI--TSGKLLD 229 (390)
T ss_pred CCcEEEEec--ccCCccc
Confidence 999999999 4555444
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.7e-07 Score=87.82 Aligned_cols=198 Identities=17% Similarity=0.149 Sum_probs=122.3
Q ss_pred eEEEEeeccccccccccCceEEEE-EcCCCcEEEEEccCCeeEEEecCC-C---------------CCCeEEEEEecC-C
Q 036605 24 YSCLACGFVGKKRRKERGTLLLAL-GTSNGDILAVDVLTGEMKWKSTGR-H---------------PGGLAGLAFAKK-G 85 (340)
Q Consensus 24 v~~l~~sp~~~~~~~~~~~~~l~~-g~~dg~i~i~d~~~~~~~~~~~~~-h---------------~~~v~~v~~~~~-~ 85 (340)
...+++.+++. .|++ -..++.|+++|..++. +.++.+. . -..-.+++|+|+ +
T Consensus 626 P~GIavd~~gn---------~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g 695 (1057)
T PLN02919 626 PQGLAYNAKKN---------LLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE 695 (1057)
T ss_pred CcEEEEeCCCC---------EEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC
Confidence 46788888765 4444 4556789999988765 3333210 0 012368999995 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeecC---------------CCCeeEEEEccCCCEEEEec---CcEEEEECCCCce
Q 036605 86 RSLHVVGTNGMASEMKSEMGEVIREFKAS---------------EKPISSSAFLCEEKIFALAS---SEVRILSLENGEE 147 (340)
Q Consensus 86 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---------------~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~~~~~ 147 (340)
..+++.+.++.|++||..++... .+.+. -.....|+++|++..|++++ +.|++||+.++..
T Consensus 696 ~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 696 KVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred eEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 45555567789999999877543 22111 12346799999998665543 3499999987643
Q ss_pred eEEe-------------ecC--------CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCcee--------
Q 036605 148 VLKF-------------SDD--------VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPAL-------- 198 (340)
Q Consensus 148 ~~~~-------------~~~--------~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~-------- 198 (340)
.... ... -.....++++++|..+++ ...++.|++||.. ++........
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA-Ds~N~rIrviD~~--tg~v~tiaG~G~~G~~dG 851 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA-DSYNHKIKKLDPA--TKRVTTLAGTGKAGFKDG 851 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE-ECCCCEEEEEECC--CCeEEEEeccCCcCCCCC
Confidence 2111 000 112468899999986666 4448999999983 3321110000
Q ss_pred ----eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 199 ----SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 199 ----~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
..-..+.-+.+ +++|..+++-+.++.|++||+.++..
T Consensus 852 ~~~~a~l~~P~GIav-----d~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 852 KALKAQLSEPAGLAL-----GENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cccccccCCceEEEE-----eCCCCEEEEECCCCEEEEEECCCCcc
Confidence 00012223333 67888888888999999999988654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=86.56 Aligned_cols=202 Identities=11% Similarity=0.117 Sum_probs=138.8
Q ss_pred CCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEe--cCCCCC---CeEEEEEecCCC-EEEE
Q 036605 18 GEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKS--TGRHPG---GLAGLAFAKKGR-SLHV 90 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~~h~~---~v~~v~~~~~~~-~l~s 90 (340)
..|.++|.-++.-|+. . -|.+++.|+.+.-+|+..+.....+ ...+.. ..+.++.+|... .+++
T Consensus 229 ~~h~g~vhklav~p~sp~---------~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV 299 (559)
T KOG1334|consen 229 APHEGPVHKLAVEPDSPK---------PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV 299 (559)
T ss_pred ccccCccceeeecCCCCC---------cccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence 3688899999999887 4 6889999999999998876533222 221333 468889998655 7899
Q ss_pred EeCCCcEEEEeCCCCeE------EEEee------cCCCCeeEEEEccCCCE-EEE-ecCcEEEEECCC--C---------
Q 036605 91 VGTNGMASEMKSEMGEV------IREFK------ASEKPISSSAFLCEEKI-FAL-ASSEVRILSLEN--G--------- 145 (340)
Q Consensus 91 ~~~dg~i~~wd~~~~~~------~~~~~------~~~~~i~~l~~~~~~~~-l~~-~~~~i~i~d~~~--~--------- 145 (340)
++.|-.+++||.+.-.. +..|- .....|++++++.++.- |++ .+..|+++.-.. |
T Consensus 300 gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~ 379 (559)
T KOG1334|consen 300 GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPR 379 (559)
T ss_pred CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcch
Confidence 99999999999764321 12221 23446899999966544 444 555588885332 2
Q ss_pred -ceeE-EeecCCC--CeEEEEE-CCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCE
Q 036605 146 -EEVL-KFSDDVG--PLQYVSA-SDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTV 220 (340)
Q Consensus 146 -~~~~-~~~~~~~--~v~~~~~-s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (340)
..+. .+++|.. .|..+-| -|...|+++|+. -|.|.||+- .+++.+..+. +... ++.| ...+|--..
T Consensus 380 ~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD-CGhIFiW~K--~t~eii~~Me---gDr~-VVNC--LEpHP~~Pv 450 (559)
T KOG1334|consen 380 EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD-CGHIFIWDK--KTGEIIRFME---GDRH-VVNC--LEPHPHLPV 450 (559)
T ss_pred hhccchhhcccccccccceeeeccCccceEEecCc-cceEEEEec--chhHHHHHhh---cccc-eEec--cCCCCCCch
Confidence 1122 3677863 4667765 677889999777 899999996 4555544443 3333 4333 455777788
Q ss_pred EEEEeCCCcEEEEECCC
Q 036605 221 ILAVAESGVAYSWDLKT 237 (340)
Q Consensus 221 l~~~s~dg~i~vwd~~~ 237 (340)
|++.+-|..|+||--.+
T Consensus 451 LAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 451 LASSGIDHDVKIWTPLT 467 (559)
T ss_pred hhccCCccceeeecCCc
Confidence 99999999999998644
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.5e-06 Score=69.56 Aligned_cols=195 Identities=17% Similarity=0.177 Sum_probs=123.7
Q ss_pred EEEeec-cccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 036605 26 CLACGF-VGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEM 104 (340)
Q Consensus 26 ~l~~sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~ 104 (340)
+.+|.+ ++. ++++-...+.|+.|+..++.... +.. . ....+++...+..|+.+..+ .+.++|+.+
T Consensus 4 gp~~d~~~g~---------l~~~D~~~~~i~~~~~~~~~~~~-~~~--~-~~~G~~~~~~~g~l~v~~~~-~~~~~d~~~ 69 (246)
T PF08450_consen 4 GPVWDPRDGR---------LYWVDIPGGRIYRVDPDTGEVEV-IDL--P-GPNGMAFDRPDGRLYVADSG-GIAVVDPDT 69 (246)
T ss_dssp EEEEETTTTE---------EEEEETTTTEEEEEETTTTEEEE-EES--S-SEEEEEEECTTSEEEEEETT-CEEEEETTT
T ss_pred ceEEECCCCE---------EEEEEcCCCEEEEEECCCCeEEE-Eec--C-CCceEEEEccCCEEEEEEcC-ceEEEecCC
Confidence 578887 567 88888889999999998886443 332 2 27788888334566666665 455559999
Q ss_pred CeEEEEeec-----CCCCeeEEEEccCCCEEEEec----------CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCE
Q 036605 105 GEVIREFKA-----SEKPISSSAFLCEEKIFALAS----------SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKI 169 (340)
Q Consensus 105 ~~~~~~~~~-----~~~~i~~l~~~~~~~~l~~~~----------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 169 (340)
++....... .....+.+++.|+|++.++.. +.|+.++.. ++.. .+...-...+.++|+|+++.
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEESSEEEEEEETTSSE
T ss_pred CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE-EEecCcccccceEECCcchh
Confidence 876544433 234578999999999877732 236667766 4433 33223456789999999998
Q ss_pred EEEEEcCCCeEEEEEccCCCCCccCCce-eeecCCC---eeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 170 IITAGYGEKHLQVWRCDISSKTVNKGPA-LSMRHSP---VAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 170 l~s~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
|+.+....+.|..|+++........... ..+.... --+.+ ..+|...++....+.|.+++.. ++.+.
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v-----D~~G~l~va~~~~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV-----DSDGNLWVADWGGGRIVVFDPD-GKLLR 218 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE-----BTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE-----cCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence 8877776888888888533321111111 1122221 12223 5678877777788899999976 54433
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-06 Score=74.87 Aligned_cols=181 Identities=14% Similarity=0.114 Sum_probs=119.0
Q ss_pred CccCCCCceeeeeeCCCC---CCCCCeEEEEeeccccccccccCceEEEEEc-C-CCcEEEEEccCCeeEEEecCC----
Q 036605 1 IWSTNDGSLLAEWKQPDG---EPVVSYSCLACGFVGKKRRKERGTLLLALGT-S-NGDILAVDVLTGEMKWKSTGR---- 71 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~-~-dg~i~i~d~~~~~~~~~~~~~---- 71 (340)
|||+.+++...++.-+.. .....-..++++|||+ +|++.. . +..|.++|+.+++.+..+.-.
T Consensus 81 v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk---------~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~ 151 (352)
T TIGR02658 81 VIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNK---------TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH 151 (352)
T ss_pred EEECccCcEEeEEccCCCchhhccCccceEEECCCCC---------EEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE
Confidence 588999998877763200 0122334788999998 777665 3 689999999888765544110
Q ss_pred --------------------------CCCCeEEE--------------EEec-CCCEEEEEeCCCcEEEEeCCCC-----
Q 036605 72 --------------------------HPGGLAGL--------------AFAK-KGRSLHVVGTNGMASEMKSEMG----- 105 (340)
Q Consensus 72 --------------------------h~~~v~~v--------------~~~~-~~~~l~s~~~dg~i~~wd~~~~----- 105 (340)
....+... .|.+ +|++++.... |.|.+.|+...
T Consensus 152 vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~ 230 (352)
T TIGR02658 152 IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL 230 (352)
T ss_pred EEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec
Confidence 00001111 1233 6777766554 99999995433
Q ss_pred eEEEEeec-------CCCCeeEEEEccCCCEEEEec------------CcEEEEECCCCceeEEeecCCCCeEEEEECCC
Q 036605 106 EVIREFKA-------SEKPISSSAFLCEEKIFALAS------------SEVRILSLENGEEVLKFSDDVGPLQYVSASDG 166 (340)
Q Consensus 106 ~~~~~~~~-------~~~~i~~l~~~~~~~~l~~~~------------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 166 (340)
.....+.. ......-++++|+++.+++.. +.|.++|..+++.+..+.. ...+..++++||
T Consensus 231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~D 309 (352)
T TIGR02658 231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQD 309 (352)
T ss_pred ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCC
Confidence 22222211 123344599999999887732 3499999999999888763 347889999999
Q ss_pred CC-EEEEEEcCCCeEEEEEccCCCCCccC
Q 036605 167 AK-IIITAGYGEKHLQVWRCDISSKTVNK 194 (340)
Q Consensus 167 ~~-~l~s~~~~d~~i~iwd~~~~~~~~~~ 194 (340)
++ +|++....++.|.++|. .+++...
T Consensus 310 gkp~lyvtn~~s~~VsViD~--~t~k~i~ 336 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDA--ETGKELS 336 (352)
T ss_pred CCeEEEEeCCCCCcEEEEEC--cCCeEEe
Confidence 99 88876755899999998 4554443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.6e-09 Score=101.24 Aligned_cols=157 Identities=11% Similarity=0.157 Sum_probs=118.4
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAF 81 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 81 (340)
|....++.+..+... +. ..|+.+.|+..|. -+..+..||.+.+|... .+.....+. |.....++.|
T Consensus 2235 ~~w~~~~~v~~~rt~--g~-s~vtr~~f~~qGn---------k~~i~d~dg~l~l~q~~-pk~~~s~qc-hnk~~~Df~F 2300 (2439)
T KOG1064|consen 2235 FEWGHGQQVVCFRTA--GN-SRVTRSRFNHQGN---------KFGIVDGDGDLSLWQAS-PKPYTSWQC-HNKALSDFRF 2300 (2439)
T ss_pred EeccCCCeEEEeecc--Cc-chhhhhhhcccCC---------ceeeeccCCceeecccC-Ccceecccc-CCccccceee
Confidence 444455555555533 33 7888889988886 58888899999999977 445556666 9889999999
Q ss_pred ecCCCEEEEEe---CCCcEEEEeCC--CCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecC
Q 036605 82 AKKGRSLHVVG---TNGMASEMKSE--MGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDD 154 (340)
Q Consensus 82 ~~~~~~l~s~~---~dg~i~~wd~~--~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~ 154 (340)
-. ..+++++ .++.+.+||.- ....... ++|...++++++-|..+.+++|+++ |++||++..+....|+.
T Consensus 2301 i~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~- 2376 (2439)
T KOG1064|consen 2301 IG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA- 2376 (2439)
T ss_pred ee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-
Confidence 74 6677765 45899999943 2222222 7899999999999999999998877 99999998877666653
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 155 VGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 155 ~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
+. ...++++++. .|.++||++.
T Consensus 2377 --------~~-~~~~f~~~ss-~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2377 --------LD-TREYFVTGSS-EGNIKIWRLS 2398 (2439)
T ss_pred --------hh-hhheeeccCc-ccceEEEEcc
Confidence 33 4568888777 9999999983
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-06 Score=70.23 Aligned_cols=194 Identities=16% Similarity=0.173 Sum_probs=110.0
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCC------CCCCeEEEEEecCC------CEEEE
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGR------HPGGLAGLAFAKKG------RSLHV 90 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~------h~~~v~~v~~~~~~------~~l~s 90 (340)
.-.-++||||+. +||.+...|+|++||+.... +..+... -...|.++.|.+-. ..|+.
T Consensus 45 QWRkl~WSpD~t---------lLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlv 114 (282)
T PF15492_consen 45 QWRKLAWSPDCT---------LLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLV 114 (282)
T ss_pred hheEEEECCCCc---------EEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEE
Confidence 346699999999 99999999999999987543 4344332 23467777775421 25677
Q ss_pred EeCCCcEEEEeCCC-----CeEEEEeec---CCCCeeEEEEccCCCEEEEecCcEEEEECCCCceeEEeecCCCCeEEEE
Q 036605 91 VGTNGMASEMKSEM-----GEVIREFKA---SEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVS 162 (340)
Q Consensus 91 ~~~dg~i~~wd~~~-----~~~~~~~~~---~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 162 (340)
-..+|.++-|-+.. .+..+.|.. ....|.++.++|..++|++++.... +.+. -.+....+++-.
T Consensus 115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~----~~~~----s~a~~~GLtaWR 186 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN----QDGM----SKASSCGLTAWR 186 (282)
T ss_pred EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC----CCcc----ccccccCceEEE
Confidence 78888887776532 223333332 3568999999999999888665421 0000 001111222222
Q ss_pred ECCCCCEEE-EEEcCCC------eEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 163 ASDGAKIII-TAGYGEK------HLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 163 ~s~~~~~l~-s~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
.-.+..|.. +....|+ +..+|.+ ..... +.......+.+..+ +. +|||..|++...+|.|.+|++
T Consensus 187 iL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~--~~~~~---fs~~~~~~d~i~km--Sl-SPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 187 ILSDSPYYKQVTSSEDDITASSKRRGLLRI--PSFKF---FSRQGQEQDGIFKM--SL-SPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred EcCCCCcEEEccccCccccccccccceeec--cceee---eeccccCCCceEEE--EE-CCCCCEEEEEEcCCeEEEEec
Confidence 222211111 1111011 1122222 11000 00001223344444 33 899999999999999999999
Q ss_pred CCCCccC
Q 036605 236 KTVSQDE 242 (340)
Q Consensus 236 ~~~~~~~ 242 (340)
.+.++..
T Consensus 259 PsL~~~~ 265 (282)
T PF15492_consen 259 PSLRLQR 265 (282)
T ss_pred Ccchhhc
Confidence 8866655
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=77.53 Aligned_cols=202 Identities=10% Similarity=0.143 Sum_probs=131.9
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc-CCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL-TGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
++...|+....-|... -+++.+.|.+++||--. .++.-..+....+.+++++.+.++...|+.|-..|.+
T Consensus 22 G~~d~vn~~~l~~~e~---------gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEE---------GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred CchhhhhhheeccCCC---------CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 6667777766666665 69999999999999533 3432223332246788999999999999999889999
Q ss_pred EEEeCCC----CeEEEEeecCCCCeeEEEEccCCCEEEEecCc-------------------------------------
Q 036605 98 SEMKSEM----GEVIREFKASEKPISSSAFLCEEKIFALASSE------------------------------------- 136 (340)
Q Consensus 98 ~~wd~~~----~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~------------------------------------- 136 (340)
.-+.+.. ....+.+..|...+..+-|+.....+++.+.+
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd 172 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGD 172 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecc
Confidence 8876542 22233344566666666555444433332221
Q ss_pred -------EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeee
Q 036605 137 -------VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDC 209 (340)
Q Consensus 137 -------i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (340)
+++.. ..-..+.++.+|.+.+.++.|.+....++++.. |..+.+||+....+.. .. ..+|...+..+
T Consensus 173 ~~gqvt~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~-d~~vi~wdigg~~g~~-~e---l~gh~~kV~~l 246 (404)
T KOG1409|consen 173 HSGQITMLKLEQ-NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS-DHSVIMWDIGGRKGTA-YE---LQGHNDKVQAL 246 (404)
T ss_pred cccceEEEEEee-cCCceEEEEcCcccceEEEEEcCCCcEEEeccc-cCceEEEeccCCccee-ee---eccchhhhhhh
Confidence 11111 112345677889999999999999989999777 9999999994222211 11 11444444333
Q ss_pred ecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 210 KNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 210 ~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.. -+--..+.+++.||.|-+|+.+..
T Consensus 247 --~~-~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 247 --SY-AQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred --hh-hhhheeeeeccCCCeEEEEeccce
Confidence 22 234467899999999999998763
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.1e-07 Score=87.69 Aligned_cols=200 Identities=14% Similarity=0.133 Sum_probs=123.5
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc-------------C----------CeeEEEecC-----
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL-------------T----------GEMKWKSTG----- 70 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~-------------~----------~~~~~~~~~----- 70 (340)
..+..|.|++||||+. +|+..+.+|+|.+.+.. - |+....|.|
T Consensus 118 ~vd~GI~a~~WSPD~E---------lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~ 188 (928)
T PF04762_consen 118 SVDSGILAASWSPDEE---------LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKA 188 (928)
T ss_pred EEcCcEEEEEECCCcC---------EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhh
Confidence 4567899999999999 99999999999886421 0 111111111
Q ss_pred ------------------CCCCCeEEEEEecCCCEEEEEeC---C---CcEEEEeCCCCeEEEEeecCCCCeeEEEEccC
Q 036605 71 ------------------RHPGGLAGLAFAKKGRSLHVVGT---N---GMASEMKSEMGEVIREFKASEKPISSSAFLCE 126 (340)
Q Consensus 71 ------------------~h~~~v~~v~~~~~~~~l~s~~~---d---g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~ 126 (340)
.+...-..|+|-.||.++++.+- . ..++||+-+ |......+.-.+--.+++|.|.
T Consensus 189 aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPs 267 (928)
T PF04762_consen 189 AARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPS 267 (928)
T ss_pred hhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCC
Confidence 01224467889999999988764 2 478999965 6654444433334467899999
Q ss_pred CCEEEEecC-----cEEEEECCCCceeEEee----cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCce
Q 036605 127 EKIFALASS-----EVRILSLENGEEVLKFS----DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA 197 (340)
Q Consensus 127 ~~~l~~~~~-----~i~i~d~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~ 197 (340)
|.++|+..+ +|.+|. ++|-.-..|. .....|..+.|++|+..|+.... | .|.+|-. ..........
T Consensus 268 G~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~-~-~vqLWt~--~NYHWYLKqe 342 (928)
T PF04762_consen 268 GNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE-D-RVQLWTR--SNYHWYLKQE 342 (928)
T ss_pred CCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec-C-CceEEEe--eCCEEEEEEE
Confidence 999988543 277776 4554444442 34567999999999998888554 4 4999987 2321111111
Q ss_pred eeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 198 LSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
+..........+ .|...+...|...+.+|.+..+++
T Consensus 343 i~~~~~~~~~~~--~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 343 IRFSSSESVNFV--KWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEccCCCCCCce--EECCCCCCEEEEEecCCcEEEEEE
Confidence 111111111112 453345566777776666655443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-07 Score=85.25 Aligned_cols=182 Identities=15% Similarity=0.190 Sum_probs=125.2
Q ss_pred CceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeE
Q 036605 41 GTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS 120 (340)
Q Consensus 41 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 120 (340)
+...++.|+-...+..+|+.+.+..+...- ..+.|.-++- +++.+++|...|.|.+-|+.+.+.++++.+|.+.+..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 334677777777888899988876655543 3335666664 4789999999999999999999999999999999987
Q ss_pred EEEccCCCEEEEecCc-----------EEEEECCCCceeEEeecCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEEccCC
Q 036605 121 SAFLCEEKIFALASSE-----------VRILSLENGEEVLKFSDDVGPLQYVSASDGA-KIIITAGYGEKHLQVWRCDIS 188 (340)
Q Consensus 121 l~~~~~~~~l~~~~~~-----------i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~~d~~i~iwd~~~~ 188 (340)
+.+ .|+.|++++.. |+|||++..+.+..+.-+.++ .-+.|.|.- ..++.++. .|...+-|.-.-
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~-sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ-SGQFQFVDTATL 298 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec-ccceeecccccc
Confidence 655 47888876543 889999988777665554444 556777753 34444455 788888883100
Q ss_pred CCCccCCcee-eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 189 SKTVNKGPAL-SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
+......... +.+..-..+++ ++++..++.|..+|.|.+|.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDi-----Ssn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDI-----SSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCccceeEEccCCCcceeEEe-----cCCCceEEEecccCcEeeec
Confidence 1110111110 00111122333 88999999999999999997
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=88.53 Aligned_cols=197 Identities=10% Similarity=0.094 Sum_probs=133.4
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC-------CeeEEEecCCCCCCeEEEEEecCCCEEEEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT-------GEMKWKSTGRHPGGLAGLAFAKKGRSLHVV 91 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~-------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 91 (340)
+|...|..++--.+.. -+++++.|.+|++|.++. ..+.++++. |+.+|.++.|-.+-+++++
T Consensus 733 GH~~~iRai~AidNEN---------SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~S- 801 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNEN---------SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIAS- 801 (1034)
T ss_pred CcHHHhHHHHhccccc---------ceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeee-
Confidence 7777777776655554 599999999999999763 236677777 9999999999988877765
Q ss_pred eCCCcEEEEeCCCCeEEEEeec--CCCCeeEEEEccC-CCEEEEe----cCcEEEEECCCCceeEEeec-----CCCCeE
Q 036605 92 GTNGMASEMKSEMGEVIREFKA--SEKPISSSAFLCE-EKIFALA----SSEVRILSLENGEEVLKFSD-----DVGPLQ 159 (340)
Q Consensus 92 ~~dg~i~~wd~~~~~~~~~~~~--~~~~i~~l~~~~~-~~~l~~~----~~~i~i~d~~~~~~~~~~~~-----~~~~v~ 159 (340)
.||.|.+||.--|+++..+.. ..+.+..+..-|+ .+.++.+ ..+|+++|.+..+-...++. ....+.
T Consensus 802 -cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 802 -CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred -ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 488999999988877654321 1222333333333 3334332 33499999999877766643 335688
Q ss_pred EEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEE-EECCC
Q 036605 160 YVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYS-WDLKT 237 (340)
Q Consensus 160 ~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~v-wd~~~ 237 (340)
+++..+.|++++++-+ .|.|.+.|.+ ++..+... .+...++.... .|..+.++....|..+.+ |....
T Consensus 881 ~iaVa~~GN~lAa~LS-nGci~~LDaR--~G~vINsw------rpmecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALS-NGCIAILDAR--NGKVINSW------RPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred EEEeccCcchhhHHhc-CCcEEEEecC--CCceeccC------Ccccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 9999999999999777 9999999984 33322211 11111221112 456677777778888888 76544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-09 Score=95.69 Aligned_cols=203 Identities=12% Similarity=0.188 Sum_probs=138.5
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC--Cc
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN--GM 96 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d--g~ 96 (340)
.+....+|++|+-+.+ +|++|+..|.|++|++.+|.....+.. |.++|+-+.-+.+|..+++.+.- ..
T Consensus 1099 d~~~~fTc~afs~~~~---------hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTN---------HLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccccceeeEEeecCCc---------eEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCch
Confidence 5678899999998888 999999999999999999998888887 99999999999999987775543 34
Q ss_pred EEEEeCCC-CeEEEEeecCCCCeeEEEEccCC--CEEEEecCcEEEEECCCCceeEEe-e---cCCCCeEEEEECCCCCE
Q 036605 97 ASEMKSEM-GEVIREFKASEKPISSSAFLCEE--KIFALASSEVRILSLENGEEVLKF-S---DDVGPLQYVSASDGAKI 169 (340)
Q Consensus 97 i~~wd~~~-~~~~~~~~~~~~~i~~l~~~~~~--~~l~~~~~~i~i~d~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~ 169 (340)
..+|++.. +.+.+.|.. -.++.|+... +.+.+......+||++++.++.++ . +....-+...|+|+...
T Consensus 1169 saLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 67898753 444455543 3566777653 233445555999999999877663 2 12223367889999987
Q ss_pred EEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC---CCCC
Q 036605 170 IITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE---KTNP 246 (340)
Q Consensus 170 l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~---~~~p 246 (340)
++- ||. +||+|.. +.+..+. .. .....-.| +|.|..++.-+ -|||+++-+.+. .+..
T Consensus 1245 Iln----dGv--LWDvR~~--~aIh~FD---~f---t~~~~G~F-HP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldq 1304 (1516)
T KOG1832|consen 1245 ILN----DGV--LWDVRIP--EAIHRFD---QF---TDYGGGGF-HPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQ 1304 (1516)
T ss_pred Eee----Cce--eeeeccH--HHHhhhh---hh---eecccccc-cCCCceEEeec-----hhhhhHHHHHHhcCccccc
Confidence 765 554 7999633 3233222 11 11122244 88888888754 479988855544 2333
Q ss_pred ceEEEeecc
Q 036605 247 AKITVKLKK 255 (340)
Q Consensus 247 ~~i~~~~~~ 255 (340)
+.+.+.+.+
T Consensus 1305 c~VtFNstG 1313 (1516)
T KOG1832|consen 1305 CAVTFNSTG 1313 (1516)
T ss_pred eEEEeccCc
Confidence 555555443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.2e-06 Score=69.07 Aligned_cols=203 Identities=15% Similarity=0.152 Sum_probs=135.7
Q ss_pred CCeEEEEeeccc-cccccccCceEEEEEcCCCc-EEEEEccCCeeEEEecCCCCCCe--EEEEEecCCCEEEEEeCC---
Q 036605 22 VSYSCLACGFVG-KKRRKERGTLLLALGTSNGD-ILAVDVLTGEMKWKSTGRHPGGL--AGLAFAKKGRSLHVVGTN--- 94 (340)
Q Consensus 22 ~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~~~h~~~v--~~v~~~~~~~~l~s~~~d--- 94 (340)
.....++.+|.. . .++.+-.-|+ ..+||..+++....+.. ..+.- -.-.|++||++||+.-.|
T Consensus 5 ~RgH~~a~~p~~~~---------avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 5 ARGHGVAAHPTRPE---------AVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTENDYET 74 (305)
T ss_pred ccccceeeCCCCCe---------EEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEeccccCC
Confidence 455678888854 5 6777776665 56799999987776654 22222 245899999999997544
Q ss_pred --CcEEEEeCC-CCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--------------------EEEEECCCCceeEEe
Q 036605 95 --GMASEMKSE-MGEVIREFKASEKPISSSAFLCEEKIFALASSE--------------------VRILSLENGEEVLKF 151 (340)
Q Consensus 95 --g~i~~wd~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--------------------i~i~d~~~~~~~~~~ 151 (340)
|.|-|||.. +-+.+.+|..+.-....+.+.|||+.|+++.+- +...|..+|+.+.+.
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 899999998 667778888888788999999999888774331 566778888887663
Q ss_pred ----ecCCCCeEEEEECCCCCEEEEEEcCCC-------eEEEEEccCCCCCccCCceee----ecCCCeeeeeecCCCCC
Q 036605 152 ----SDDVGPLQYVSASDGAKIIITAGYGEK-------HLQVWRCDISSKTVNKGPALS----MRHSPVAIDCKNSPNGE 216 (340)
Q Consensus 152 ----~~~~~~v~~~~~s~~~~~l~s~~~~d~-------~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 216 (340)
..|...+..+++.++|..++..-. .+ .|.+++- ++....+... ......+-++ ++ +.
T Consensus 155 ~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~-qg~~~~~~PLva~~~~----g~~~~~~~~p~~~~~~l~~Y~gSI--a~-~~ 226 (305)
T PF07433_consen 155 ELPPDLHQLSIRHLAVDGDGTVAFAMQY-QGDPGDAPPLVALHRR----GGALRLLPAPEEQWRRLNGYIGSI--AA-DR 226 (305)
T ss_pred ecCccccccceeeEEecCCCcEEEEEec-CCCCCccCCeEEEEcC----CCcceeccCChHHHHhhCCceEEE--EE-eC
Confidence 337788999999999976555333 22 2444442 1111111100 0111222233 33 56
Q ss_pred CCCEE-EEEeCCCcEEEEECCCCCccC
Q 036605 217 DGTVI-LAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 217 ~~~~l-~~~s~dg~i~vwd~~~~~~~~ 242 (340)
++..+ +++-..|.+.+||..++..+.
T Consensus 227 ~g~~ia~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 227 DGRLIAVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred CCCEEEEECCCCCEEEEEECCCCCEee
Confidence 77666 555567889999999988776
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-07 Score=77.83 Aligned_cols=158 Identities=9% Similarity=0.053 Sum_probs=112.5
Q ss_pred CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE---EecCC----CCCCeEEEEEecCC-CEEE
Q 036605 18 GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW---KSTGR----HPGGLAGLAFAKKG-RSLH 89 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~---~~~~~----h~~~v~~v~~~~~~-~~l~ 89 (340)
..|..-|.++.+..|+. .++++ .|=.|.+|+++-...-. .++.. -..-|++..|+|.. +.++
T Consensus 161 NaHtyhiNSIS~NsD~E---------t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~ 230 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKE---------TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFV 230 (433)
T ss_pred ccceeEeeeeeecCccc---------eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEE
Confidence 46888999999999988 55554 67789999987543222 22220 12357888999954 4566
Q ss_pred EEeCCCcEEEEeCCCCeEE----EE------------eecCCCCeeEEEEccCCCEEEEecCc-EEEEEC-CCCceeEEe
Q 036605 90 VVGTNGMASEMKSEMGEVI----RE------------FKASEKPISSSAFLCEEKIFALASSE-VRILSL-ENGEEVLKF 151 (340)
Q Consensus 90 s~~~dg~i~~wd~~~~~~~----~~------------~~~~~~~i~~l~~~~~~~~l~~~~~~-i~i~d~-~~~~~~~~~ 151 (340)
..+..|.|++.|++..... .. |..--..|+.+.|+++|+++++-+.- |++||+ ...+++..+
T Consensus 231 YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~ 310 (433)
T KOG1354|consen 231 YSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETY 310 (433)
T ss_pred EecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEE
Confidence 6678899999999853211 01 11122457889999999999998754 999999 445566666
Q ss_pred ecCC---------------CCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 152 SDDV---------------GPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 152 ~~~~---------------~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
+-|. ..-..++|+.++.++++|+. .+.+++|++.
T Consensus 311 ~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy-~n~frvf~~~ 359 (433)
T KOG1354|consen 311 PVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSY-NNVFRVFNLA 359 (433)
T ss_pred eehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccc-cceEEEecCC
Confidence 6554 12356788999999999888 8999999963
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-08 Score=81.95 Aligned_cols=144 Identities=13% Similarity=0.166 Sum_probs=106.2
Q ss_pred EEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC-----eEEEEeecCCCCeeE
Q 036605 46 ALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMG-----EVIREFKASEKPISS 120 (340)
Q Consensus 46 ~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~-----~~~~~~~~~~~~i~~ 120 (340)
++.+.+-.|.+-|+++|- ...|. ..+.|.++.|...++.++.|..+|.|..+|++.+ ...+.+ -|.+.|++
T Consensus 228 fs~G~sqqv~L~nvetg~-~qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH-QQSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeeccc-ccccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhh
Confidence 444556678888999884 33444 5678999999988999999999999999999875 233333 37788898
Q ss_pred EEEcc-CCCEEEE--ecCcEEEEECCCCce---eEEeecCCCCeEEEE--ECCCCCEEEEEEcCCCeEEEEEccCCCCCc
Q 036605 121 SAFLC-EEKIFAL--ASSEVRILSLENGEE---VLKFSDDVGPLQYVS--ASDGAKIIITAGYGEKHLQVWRCDISSKTV 192 (340)
Q Consensus 121 l~~~~-~~~~l~~--~~~~i~i~d~~~~~~---~~~~~~~~~~v~~~~--~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~ 192 (340)
+..-. ++++|.+ .++.|++||++--+. +..+.+|...-.-+- ..+....++++|. |...+||.+ ..+..
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd-DcytRiWsl--~~ghL 380 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD-DCYTRIWSL--DSGHL 380 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC-eeEEEEEec--ccCce
Confidence 88776 6777766 455599999986655 888888875444333 3566678888777 999999999 45544
Q ss_pred cCCc
Q 036605 193 NKGP 196 (340)
Q Consensus 193 ~~~~ 196 (340)
....
T Consensus 381 l~ti 384 (425)
T KOG2695|consen 381 LCTI 384 (425)
T ss_pred eecc
Confidence 4433
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-06 Score=72.87 Aligned_cols=168 Identities=14% Similarity=0.163 Sum_probs=121.7
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCC-cEEEEeCCCCeEEEEeecCCCCeeEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG-MASEMKSEMGEVIREFKASEKPISSSA 122 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~i~~l~ 122 (340)
+++..+ .|...|.+...+-.+ .+ +|.+.|.-..+..+++-++.|..|| .+-++|..+++.. .+...-+.|.++.
T Consensus 334 ~ia~VS-RGkaFi~~~~~~~~i-qv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~ 408 (668)
T COG4946 334 YIALVS-RGKAFIMRPWDGYSI-QV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVK 408 (668)
T ss_pred EEEEEe-cCcEEEECCCCCeeE-Ec--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEE
Confidence 566554 567777776655433 22 3778899999988888999999998 8999999988754 4555677899999
Q ss_pred EccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc---CCCeEEEEEccCCCCCccCCce
Q 036605 123 FLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY---GEKHLQVWRCDISSKTVNKGPA 197 (340)
Q Consensus 123 ~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---~d~~i~iwd~~~~~~~~~~~~~ 197 (340)
.+|+|+.++++... +.++|+.++.....-+...+-|+...|+|++++++-+-- -...|+++|+ ..++.....
T Consensus 409 vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm--~~~Kiy~vT- 485 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM--DGGKIYDVT- 485 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEec--CCCeEEEec-
Confidence 99999999887776 888899999655444556688999999999999987544 1346899998 343332211
Q ss_pred eeecCCCeeeeeecCCCCCCCCEEEEEe
Q 036605 198 LSMRHSPVAIDCKNSPNGEDGTVILAVA 225 (340)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~l~~~s 225 (340)
.+...+...+| .|++.+|..-+
T Consensus 486 -----T~ta~DfsPaF-D~d~ryLYfLs 507 (668)
T COG4946 486 -----TPTAYDFSPAF-DPDGRYLYFLS 507 (668)
T ss_pred -----CCcccccCccc-CCCCcEEEEEe
Confidence 22233444466 78888876654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-08 Score=56.66 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=35.6
Q ss_pred eeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 036605 63 EMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMK 101 (340)
Q Consensus 63 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd 101 (340)
+.+..+.+ |.+.|++++|+|++..|++++.|+.|++||
T Consensus 2 ~~~~~~~~-h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG-HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEES-SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcC-CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56778888 999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-06 Score=68.21 Aligned_cols=198 Identities=10% Similarity=-0.003 Sum_probs=118.0
Q ss_pred ceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeE
Q 036605 42 TLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKK-GRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS 120 (340)
Q Consensus 42 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 120 (340)
+.+||.|+..|...+|...+.+....+-..|...|+-+.=..+ ...+..++.|.++++.++.-+..........-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 4589999999999999988765333322224433322211111 224666788888888877655433333222233788
Q ss_pred EEEccCCCEEEEecCc--EEEEECCCC-cee-EEe-ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCC
Q 036605 121 SAFLCEEKIFALASSE--VRILSLENG-EEV-LKF-SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKG 195 (340)
Q Consensus 121 l~~~~~~~~l~~~~~~--i~i~d~~~~-~~~-~~~-~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~ 195 (340)
+++++|++++++.+.. |..|.+... +.+ ... ......--+..|+.....++++.. ||++.|||+|.. +.....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q-dg~~~I~DVR~~-~tpm~~ 241 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ-DGTCAIYDVRNM-ATPMAE 241 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec-CCcEEEEEeccc-ccchhh
Confidence 9999999999885544 888887543 222 212 222334456788888888888776 999999999732 222222
Q ss_pred ceeee-cCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 196 PALSM-RHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 196 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
..-+- .|...+..+......+. .+|+..-.-+.+.+.|++++....
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~l-DLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLL-DLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcc-eEEEEecCcceEEEEEcccCceee
Confidence 11111 34444554422211222 234444456789999999876655
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.6e-06 Score=72.96 Aligned_cols=181 Identities=15% Similarity=0.153 Sum_probs=109.4
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCe-----EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC--
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGL-----AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEK-- 116 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v-----~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-- 116 (340)
.++.++.+|.|+.||.++|+.++++.. ....+ ...... +..++.+..++.+..+|+.+|+.+........
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~-~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g 223 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGERLWTYSR-VTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG 223 (377)
T ss_pred EEEEECCCCeEEEEEcCCCceeeEEcc-CCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCC
Confidence 577788899999999999998888764 22111 111222 34778888889999999999987655331100
Q ss_pred --C------e-eEEEEccCCCEEEE-ecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 117 --P------I-SSSAFLCEEKIFAL-ASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 117 --~------i-~~l~~~~~~~~l~~-~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
. + ....+. ++..++. .++.++.||..+++.+..... . ....+.. ++..++.+.. ++.+..+|.
T Consensus 224 ~~~~~~~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~-~G~l~~~d~- 296 (377)
T TIGR03300 224 RTELERLVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDA-DGVVVALDR- 296 (377)
T ss_pred CCchhhhhccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCceE--eCCEEEEECC-CCeEEEEEC-
Confidence 0 0 111122 2333333 455699999999987655431 1 1122222 3456777666 899999998
Q ss_pred CCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 187 ISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.+++...... .+... ... .. ...+..+++++.+|.|+++|..+++.+.
T Consensus 297 -~tG~~~W~~~-~~~~~--~~s---sp-~i~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 297 -RSGSELWKND-ELKYR--QLT---AP-AVVGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred -CCCcEEEccc-cccCC--ccc---cC-EEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4554322111 00110 000 11 1235688999999999999998887765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-08 Score=80.75 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=95.7
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC-----eeEEEecCCCCCCeEEEEEec-CCCEEEEEeC
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG-----EMKWKSTGRHPGGLAGLAFAK-KGRSLHVVGT 93 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~ 93 (340)
-++.|.++.|...+. ++..|+.+|.|..+|++.+ .....+. |...|+++..-. ++++|++.+.
T Consensus 251 sksDVfAlQf~~s~n---------Lv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvtslq~Lq~s~q~LmaS~M 319 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN---------LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTSLQILQFSQQKLMASDM 319 (425)
T ss_pred cchhHHHHHhcccCC---------eeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhhhhhhccccceEeeccC
Confidence 356788888887777 8999999999999999865 2444555 899999998766 7889999999
Q ss_pred CCcEEEEeCCCCeE---EEEeecCCCCeeE--EEEccCCCEEEEecCc--EEEEECCCCceeEEeec
Q 036605 94 NGMASEMKSEMGEV---IREFKASEKPISS--SAFLCEEKIFALASSE--VRILSLENGEEVLKFSD 153 (340)
Q Consensus 94 dg~i~~wd~~~~~~---~~~~~~~~~~i~~--l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~ 153 (340)
+|.|++||.+.-+. +..+.+|...-.- +-+.+....+++++.+ .+||.++.+..+.+++.
T Consensus 320 ~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 320 TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 99999999987665 7778887543322 3345666777776666 89999999988876643
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-06 Score=83.54 Aligned_cols=197 Identities=15% Similarity=0.150 Sum_probs=131.3
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEE----EccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCc
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAV----DVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGM 96 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~----d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~ 96 (340)
...|.++.+-++.. .++.+..+|.|.++ +..+.. ...-+.-...|.+++||||+..|+....++.
T Consensus 75 ~~~ivs~~yl~d~~---------~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~ 143 (928)
T PF04762_consen 75 NDKIVSFQYLADSE---------SLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASWSPDEELLALVTGEGN 143 (928)
T ss_pred CCcEEEEEeccCCC---------cEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEECCCcCEEEEEeCCCE
Confidence 36788888888887 69999999999999 544443 2222224568999999999999999998988
Q ss_pred EEEEeCCCCeEE------------------------EEeec------------------------CCCCeeEEEEccCCC
Q 036605 97 ASEMKSEMGEVI------------------------REFKA------------------------SEKPISSSAFLCEEK 128 (340)
Q Consensus 97 i~~wd~~~~~~~------------------------~~~~~------------------------~~~~i~~l~~~~~~~ 128 (340)
+.+.+-. ..++ ..|.+ ....-..|+|-.||.
T Consensus 144 l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 144 LLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE 222 (928)
T ss_pred EEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence 8876521 1111 11110 111335788999999
Q ss_pred EEEEe------c--CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC--CCeEEEEEccCCCCCccCCcee
Q 036605 129 IFALA------S--SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG--EKHLQVWRCDISSKTVNKGPAL 198 (340)
Q Consensus 129 ~l~~~------~--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~--d~~i~iwd~~~~~~~~~~~~~~ 198 (340)
++|+. + +.+++|+-+ |.....-..-.+--..++|.|.|..|++.... ...|.+|. ..|.....+.+
T Consensus 223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE---rNGLrhgeF~l 298 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE---RNGLRHGEFTL 298 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe---cCCcEeeeEec
Confidence 99772 2 239999954 54333323333444678999999988886553 24566666 34555555555
Q ss_pred ee-cCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 199 SM-RHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 199 ~~-~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.. .....+..+ .| +.++..|+....|. |.+|-..+
T Consensus 299 ~~~~~~~~v~~l--~W-n~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 299 RFDPEEEKVIEL--AW-NSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred CCCCCCceeeEE--EE-CCCCCEEEEEecCC-ceEEEeeC
Confidence 44 223345555 77 89999999888776 99997776
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.4e-08 Score=55.80 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=35.8
Q ss_pred CceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEE
Q 036605 7 GSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVD 58 (340)
Q Consensus 7 g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d 58 (340)
|+++..+. +|...|++|+|+|++. +|++|+.|+.|++||
T Consensus 1 g~~~~~~~----~h~~~i~~i~~~~~~~---------~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR----GHSSSINSIAWSPDGN---------FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE----SSSSSEEEEEEETTSS---------EEEEEETTSEEEEEE
T ss_pred CeEEEEEc----CCCCcEEEEEEecccc---------cceeeCCCCEEEEEC
Confidence 45677888 8999999999999999 999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-06 Score=78.20 Aligned_cols=211 Identities=14% Similarity=0.102 Sum_probs=137.6
Q ss_pred CCCCCeEEEEeecccccccc---ccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEec---CC-CEEEEE
Q 036605 19 EPVVSYSCLACGFVGKKRRK---ERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAK---KG-RSLHVV 91 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~---~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~---~~-~~l~s~ 91 (340)
.|...|+.+.|.|-...|.- .....+||++.-.|.|.+||...+..+..+.. |..++..++|-+ +. ..|+.-
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaI 131 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAI 131 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC-CCcchhheeeeeccCcchheeEEe
Confidence 88999999999987643321 22456888899999999999999988888887 889999999976 23 356666
Q ss_pred eCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEcc-CCCEEEE-ecCc-EEEEEC-CC------CceeEEeecCCC-----
Q 036605 92 GTNGMASEMKSEMGEVIREFKASEKPISSSAFLC-EEKIFAL-ASSE-VRILSL-EN------GEEVLKFSDDVG----- 156 (340)
Q Consensus 92 ~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~-~~~~-i~i~d~-~~------~~~~~~~~~~~~----- 156 (340)
.....+.+|+..+|+...+.........|+.+.| |.+++.. +.+. +.+-+. .. ++..+.-..|..
T Consensus 132 h~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~le 211 (1062)
T KOG1912|consen 132 HGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLE 211 (1062)
T ss_pred cCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhh
Confidence 6778999999999999888877777788888888 3344433 3322 333332 11 111111111111
Q ss_pred --------------------CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCC
Q 036605 157 --------------------PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGE 216 (340)
Q Consensus 157 --------------------~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (340)
....++|+|.-+.++.... .+.+.|+|+... .......++-+ ...+.++ .. .+
T Consensus 212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~-prellv~dle~~--~~l~vvpier~-~akfv~v--lP-~~ 284 (1062)
T KOG1912|consen 212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF-PRELLVFDLEYE--CCLAVVPIERG-GAKFVDV--LP-DP 284 (1062)
T ss_pred hhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-ccceEEEcchhh--ceeEEEEeccC-CcceeEe--cc-CC
Confidence 1233566887666666567 789999998422 22222221111 1224444 22 45
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 036605 217 DGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 217 ~~~~l~~~s~dg~i~vwd~~~ 237 (340)
....|+++-.||.+.+|--+.
T Consensus 285 ~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 285 RRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CcceEEEEecCCeEEEEEeec
Confidence 556799999999999997655
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.8e-06 Score=81.41 Aligned_cols=151 Identities=7% Similarity=0.070 Sum_probs=102.3
Q ss_pred eEEEEeecc-ccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC--------CC------CCCeEEEEEecCCCEE
Q 036605 24 YSCLACGFV-GKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG--------RH------PGGLAGLAFAKKGRSL 88 (340)
Q Consensus 24 v~~l~~sp~-~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--------~h------~~~v~~v~~~~~~~~l 88 (340)
-..++|+|+ +. ++++.+.++.|++||..++... .+.+ .+ -.....|+|+|+++.|
T Consensus 685 P~gVa~dp~~g~---------LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~L 754 (1057)
T PLN02919 685 PWDVCFEPVNEK---------VYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKEL 754 (1057)
T ss_pred CeEEEEecCCCe---------EEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEE
Confidence 357899994 56 7778888899999998877533 2211 01 1234679999999866
Q ss_pred EEEe-CCCcEEEEeCCCCeEEEEeec-------------C--------CCCeeEEEEccCCCEEEEe--cCcEEEEECCC
Q 036605 89 HVVG-TNGMASEMKSEMGEVIREFKA-------------S--------EKPISSSAFLCEEKIFALA--SSEVRILSLEN 144 (340)
Q Consensus 89 ~s~~-~dg~i~~wd~~~~~~~~~~~~-------------~--------~~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~ 144 (340)
+.+. .++.|++||+.++.......+ . -.....++++++|.++++. ++.|++||..+
T Consensus 755 YVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 755 YIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred EEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC
Confidence 6654 568999999987653211100 0 0124688999999876663 44499999988
Q ss_pred CceeEEeec--------------CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 145 GEEVLKFSD--------------DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 145 ~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
+... .+.+ .-.....++++++|+.+++ ...++.|++||++
T Consensus 835 g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa-Dt~Nn~Irvid~~ 888 (1057)
T PLN02919 835 KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA-DTNNSLIRYLDLN 888 (1057)
T ss_pred CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE-ECCCCEEEEEECC
Confidence 7543 2211 1124678999999986666 4559999999983
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-07 Score=73.71 Aligned_cols=198 Identities=9% Similarity=0.103 Sum_probs=117.1
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee------------EEEecCCCCCCeEEEEEecCCCEEEE
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM------------KWKSTGRHPGGLAGLAFAKKGRSLHV 90 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~------------~~~~~~~h~~~v~~v~~~~~~~~l~s 90 (340)
.++.+.++-+. .|+++..++.+..+..-++.+ .+.+.. |+++-.+-+.+-.++.+++
T Consensus 38 ~~~~~~~v~~~----------~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~-~sep~p~~~~s~~~t~V~~ 106 (319)
T KOG4714|consen 38 KLSKVSLSAEY----------ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAK-NSEIDPNDACTMTDNRVCI 106 (319)
T ss_pred EEEEeechhhh----------eeecccchhheeeeccceEEEechhhcccCcCceeeeec-cCCCCCcccccccCCceEe
Confidence 35666665433 478887777776665433322 233332 4443333333334677899
Q ss_pred EeCCCcEEEEeCCCCeEE-EEeecCCCCeeEEEEccCCCEEEEe-------cCcEEEEECCCCceeEEeecCCCCeEEEE
Q 036605 91 VGTNGMASEMKSEMGEVI-REFKASEKPISSSAFLCEEKIFALA-------SSEVRILSLENGEEVLKFSDDVGPLQYVS 162 (340)
Q Consensus 91 ~~~dg~i~~wd~~~~~~~-~~~~~~~~~i~~l~~~~~~~~l~~~-------~~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 162 (340)
+..||.+.+++.+.-..+ .+.......-.+.++...+..+.++ -+..+.|+++..+.+..-......|++++
T Consensus 107 ~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~ 186 (319)
T KOG4714|consen 107 GYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALC 186 (319)
T ss_pred cCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhh
Confidence 999999999987641111 1111111111223333444444442 22377788765543322111223488999
Q ss_pred ECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 163 ASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 163 ~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
-+|..+.++.++.+||.+-+||.|.- . -...+...|...+..+ .|...++..|+++++||.+..||..+
T Consensus 187 ~hp~qq~~v~cgt~dg~~~l~d~rn~--~--~p~S~l~ahk~~i~eV--~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 187 SHPAQQHLVCCGTDDGIVGLWDARNV--A--MPVSLLKAHKAEIWEV--HFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCcccccEEEEecCCCeEEEEEcccc--c--chHHHHHHhhhhhhhe--eccCCCchheeEecCCCcEEEEcCCC
Confidence 99998888888888999999999622 1 1112222555555555 55567888999999999999999875
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.3e-07 Score=76.76 Aligned_cols=178 Identities=15% Similarity=0.066 Sum_probs=120.0
Q ss_pred EEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC----------
Q 036605 25 SCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN---------- 94 (340)
Q Consensus 25 ~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---------- 94 (340)
+-+.|||-|. ||++--.-| |.+|--++-...+++. |+ .|.-+.|||..++|++-+..
T Consensus 214 tyv~wSP~GT---------YL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e 280 (698)
T KOG2314|consen 214 TYVRWSPKGT---------YLVTFHKQG-IALWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNE 280 (698)
T ss_pred eeEEecCCce---------EEEEEeccc-eeeecCccHHHHHhcc--CC-CceeeecCCccceEEEecCCccccCcccCC
Confidence 5688999999 899887776 8899766655666666 76 68999999999999996531
Q ss_pred -CcEEEEeCCCCeEEEEeecC--CCCe-eEEEEccCCCEEEEecCc-EEEEECCCCceeEEeecCCCCeEEEEECCCCCE
Q 036605 95 -GMASEMKSEMGEVIREFKAS--EKPI-SSSAFLCEEKIFALASSE-VRILSLENGEEVLKFSDDVGPLQYVSASDGAKI 169 (340)
Q Consensus 95 -g~i~~wd~~~~~~~~~~~~~--~~~i-~~l~~~~~~~~l~~~~~~-i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 169 (340)
..+++||+.+|.....|... ...+ .-+.||.|++++|....+ |.||+..+-..+-.-......|....|+|.+..
T Consensus 281 ~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 281 GQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNL 360 (698)
T ss_pred CceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcce
Confidence 47899999999988887762 2222 346799999999985555 999998765443222223467888999999877
Q ss_pred EEEEEcCC----CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEE
Q 036605 170 IITAGYGE----KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILA 223 (340)
Q Consensus 170 l~s~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 223 (340)
|+.-.... ..+.+-.+ ++++.++... --.+.++...| ..+|.+|+.
T Consensus 361 lAYwtpe~~~~parvtL~ev--Ps~~~iRt~n-----lfnVsDckLhW-Qk~gdyLcv 410 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEV--PSKREIRTKN-----LFNVSDCKLHW-QKSGDYLCV 410 (698)
T ss_pred EEEEcccccCCcceEEEEec--Cccceeeecc-----ceeeeccEEEe-ccCCcEEEE
Confidence 76543321 23455555 3433332221 11233444455 566666654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.2e-06 Score=71.82 Aligned_cols=219 Identities=10% Similarity=0.078 Sum_probs=138.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||..+|.+.+.|... ......-.-..||.|++ |+|--.. ..|.||+.....++- .....-..|....
T Consensus 286 IWDI~tG~lkrsF~~~-~~~~~~WP~frWS~DdK---------y~Arm~~-~sisIyEtpsf~lld-~Kslki~gIr~Fs 353 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVI-KSPYLKWPIFRWSHDDK---------YFARMTG-NSISIYETPSFMLLD-KKSLKISGIRDFS 353 (698)
T ss_pred EEEccccchhcceecc-CCCccccceEEeccCCc---------eeEEecc-ceEEEEecCceeeec-ccccCCccccCcc
Confidence 7999999999888742 11222334578999999 8887665 469999976643321 1111345789999
Q ss_pred EecCCCEEEEEeCC-----CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ec--------Cc---EEEEECC
Q 036605 81 FAKKGRSLHVVGTN-----GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-AS--------SE---VRILSLE 143 (340)
Q Consensus 81 ~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~--------~~---i~i~d~~ 143 (340)
|+|.++.|+.=... ..+.+..+.+++.++.-..+.-.-..+-|-.+|.+|.. .+ +. +-|+.++
T Consensus 354 wsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 354 WSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred cCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence 99998888764322 46778888888777665444433455677788888865 11 11 5566666
Q ss_pred CCceeEEeecCCCCeEEEEECCCCCEEEEEEcC--CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEE
Q 036605 144 NGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG--EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVI 221 (340)
Q Consensus 144 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (340)
..............|...+|-|.|..+++-+.+ ..++.+|.+....+.......+ .. .....+ .| +|.|.++
T Consensus 434 eKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~--dk-~~~N~v--fw-sPkG~fv 507 (698)
T KOG2314|consen 434 EKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL--DK-KFANTV--FW-SPKGRFV 507 (698)
T ss_pred ccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh--cc-cccceE--EE-cCCCcEE
Confidence 554433333345678889999999877654443 4678899884222211111111 11 112223 45 8999998
Q ss_pred EEE---eCCCcEEEEECCC
Q 036605 222 LAV---AESGVAYSWDLKT 237 (340)
Q Consensus 222 ~~~---s~dg~i~vwd~~~ 237 (340)
+.+ |..|.+.++|...
T Consensus 508 vva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 508 VVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred EEEEecccccceEEEecch
Confidence 776 4578899999885
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.6e-07 Score=71.95 Aligned_cols=205 Identities=13% Similarity=0.103 Sum_probs=130.6
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-----eEEEecCCCC------------CCeEEEEEe
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-----MKWKSTGRHP------------GGLAGLAFA 82 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-----~~~~~~~~h~------------~~v~~v~~~ 82 (340)
....|+++.|...|. ||++|...|.|.+|.-+... ....+++ |. ..|..+.|.
T Consensus 25 ead~ItaVefd~tg~---------YlatGDkgGRVvlfer~~s~~ceykf~teFQs-he~EFDYLkSleieEKin~I~w~ 94 (460)
T COG5170 25 EADKITAVEFDETGL---------YLATGDKGGRVVLFEREKSYGCEYKFFTEFQS-HELEFDYLKSLEIEEKINAIEWF 94 (460)
T ss_pred ccceeeEEEeccccc---------eEeecCCCceEEEeecccccccchhhhhhhcc-cccchhhhhhccHHHHhhheeee
Confidence 346789999998888 99999999999999865433 1122333 43 367889987
Q ss_pred cCCC--EEEEEeCCCcEEEEeCCCCeE-------------------------------------E-----EE-eecCCCC
Q 036605 83 KKGR--SLHVVGTNGMASEMKSEMGEV-------------------------------------I-----RE-FKASEKP 117 (340)
Q Consensus 83 ~~~~--~l~s~~~dg~i~~wd~~~~~~-------------------------------------~-----~~-~~~~~~~ 117 (340)
.++. .++..+.|.+|++|.+..... + +. -..|...
T Consensus 95 ~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred cCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence 6554 466668899999998653210 0 00 1245556
Q ss_pred eeEEEEccCCCEEEEecCc-EEEEECCCCce---eEEeecCC-----CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCC
Q 036605 118 ISSSAFLCEEKIFALASSE-VRILSLENGEE---VLKFSDDV-----GPLQYVSASDGAKIIITAGYGEKHLQVWRCDIS 188 (340)
Q Consensus 118 i~~l~~~~~~~~l~~~~~~-i~i~d~~~~~~---~~~~~~~~-----~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~ 188 (340)
+.++.+..|...+++++.- |.+|++.-... +..++.|. ..|++..|+|....++.-+...|.|++-|+|..
T Consensus 175 iNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 175 INSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 7889999999888887765 99999864322 22334443 467888999975544444444899999999733
Q ss_pred CCCcc--CCceeeec---C------CCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 189 SKTVN--KGPALSMR---H------SPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 189 ~~~~~--~~~~~~~~---~------~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.--.. ..+...+. + ...+.++ -| +++|+++++-..- +|.+||+...
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~--kF-s~ngryIlsRdyl-tvkiwDvnm~ 311 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDF--KF-SDNGRYILSRDYL-TVKIWDVNMA 311 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcce--EE-cCCCcEEEEeccc-eEEEEecccc
Confidence 21000 00110000 0 0111222 33 7889988876654 5999999863
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.4e-06 Score=70.95 Aligned_cols=170 Identities=11% Similarity=0.137 Sum_probs=113.6
Q ss_pred CccCCCCceeeeeeCCCCCCCCC--eE-EEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee-EEEecCCCCCCe
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVS--YS-CLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM-KWKSTGRHPGGL 76 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~--v~-~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~h~~~v 76 (340)
|||..+|.++..|... ..+ .. -+.|+-+.+ |+|-- ....++|+++ ++.. ...+...-...|
T Consensus 112 vwd~~sg~iv~sf~~~----~q~~~~Wp~~k~s~~D~---------y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 112 VWDIASGMIVFSFNGI----SQPYLGWPVLKFSIDDK---------YVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGI 176 (561)
T ss_pred EEeccCceeEeecccc----CCcccccceeeeeecch---------hhhhh-ccCeEEEEec-CCccccCchhhccccce
Confidence 6999999999888733 333 33 688998887 55544 4557999997 4332 222222123568
Q ss_pred EEEEEecCCC--EEEE-----EeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-------------ecCc
Q 036605 77 AGLAFAKKGR--SLHV-----VGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-------------ASSE 136 (340)
Q Consensus 77 ~~v~~~~~~~--~l~s-----~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-------------~~~~ 136 (340)
....|+|.++ .|+. .+.++.+++|.+..+..+..-..-+..-..+.|.+.|.+|.+ |...
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn 256 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN 256 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce
Confidence 8899999643 3443 456789999999877766553333333457889999988754 1122
Q ss_pred EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEE-cCCCeEEEEEcc
Q 036605 137 VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAG-YGEKHLQVWRCD 186 (340)
Q Consensus 137 i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~d~~i~iwd~~ 186 (340)
++++++... .+.......++|...+|.|.++.+++.+ ..+..+.++|++
T Consensus 257 Lyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 257 LYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EEEEeeccc-ccceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence 888888743 2322225578999999999887766654 558889999984
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-05 Score=70.22 Aligned_cols=189 Identities=16% Similarity=0.175 Sum_probs=109.9
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAF 123 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~ 123 (340)
.+++++.+|.|..+|..+|+.++++.- .......+.. ++..++.++.++.+..+|..+|+.+..............+
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~-~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v 143 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDL-DERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV 143 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecC-CCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence 588888999999999999999988764 2221222322 4678888899999999999999988765533221112222
Q ss_pred ccCCCEEEE-ecCcEEEEECCCCceeEEeecCCCCe-----EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCce
Q 036605 124 LCEEKIFAL-ASSEVRILSLENGEEVLKFSDDVGPL-----QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA 197 (340)
Q Consensus 124 ~~~~~~l~~-~~~~i~i~d~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~ 197 (340)
.++..++. .++.++.||.++|+.+.++....... ....+. ++ .++.+.. ++.+..+|. .+++......
T Consensus 144 -~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~~~~-~g~v~ald~--~tG~~~W~~~ 217 (377)
T TIGR03300 144 -ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLVGFA-GGKLVALDL--QTGQPLWEQR 217 (377)
T ss_pred -ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEEECC-CCEEEEEEc--cCCCEeeeec
Confidence 23433333 45569999999998776654322111 111222 23 5565455 788888887 4444322111
Q ss_pred eeecCCC----eeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 198 LSMRHSP----VAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 198 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
....... ....+.... .-.+..+++++.+|.++.||..+++.+-
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p-~~~~~~vy~~~~~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDP-VVDGGQVYAVSYQGRVAALDLRSGRVLW 265 (377)
T ss_pred cccCCCCCchhhhhccCCcc-EEECCEEEEEEcCCEEEEEECCCCcEEE
Confidence 1000000 000000000 1134567777888888888888765543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.6e-05 Score=63.52 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=97.4
Q ss_pred eEEEEee-ccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEec---CC-CCCCeEEEEEecCCCEEEEEeCC----
Q 036605 24 YSCLACG-FVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKST---GR-HPGGLAGLAFAKKGRSLHVVGTN---- 94 (340)
Q Consensus 24 v~~l~~s-p~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~~-h~~~v~~v~~~~~~~~l~s~~~d---- 94 (340)
...+++. ++++ |+++... .+.++|..+++....+. .. .....+.+++.++|+..++....
T Consensus 42 ~~G~~~~~~~g~----------l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~ 110 (246)
T PF08450_consen 42 PNGMAFDRPDGR----------LYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS 110 (246)
T ss_dssp EEEEEEECTTSE----------EEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT
T ss_pred CceEEEEccCCE----------EEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc
Confidence 5566666 6666 5555444 45666999886443332 21 33467899999999966665433
Q ss_pred ----CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec---CcEEEEECCCCce-e---EEe---ecCCCCeEE
Q 036605 95 ----GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS---SEVRILSLENGEE-V---LKF---SDDVGPLQY 160 (340)
Q Consensus 95 ----g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~~~~~-~---~~~---~~~~~~v~~ 160 (340)
|.|..++.. ++...... .-.....|+|+|+++.|+.++ +.|..|++..... + ..+ ....+....
T Consensus 111 ~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG 188 (246)
T PF08450_consen 111 GIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDG 188 (246)
T ss_dssp CGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEE
T ss_pred cccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCc
Confidence 568888887 55443333 344568999999999887643 3388888853221 1 222 222234788
Q ss_pred EEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCce
Q 036605 161 VSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA 197 (340)
Q Consensus 161 ~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~ 197 (340)
+++..+|+..++... .+.|.+++. .++....+.
T Consensus 189 ~~vD~~G~l~va~~~-~~~I~~~~p---~G~~~~~i~ 221 (246)
T PF08450_consen 189 LAVDSDGNLWVADWG-GGRIVVFDP---DGKLLREIE 221 (246)
T ss_dssp EEEBTTS-EEEEEET-TTEEEEEET---TSCEEEEEE
T ss_pred ceEcCCCCEEEEEcC-CCEEEEECC---CccEEEEEc
Confidence 999999976666444 899999995 355544444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-06 Score=76.67 Aligned_cols=150 Identities=12% Similarity=0.125 Sum_probs=115.5
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCC------------CEEEE
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKG------------RSLHV 90 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~------------~~l~s 90 (340)
.-.++.|+|.|- +|.|+.. .|.+.|..+-+.+..+.. |+..|+.+.|.|-. -.|++
T Consensus 17 N~~A~Dw~~~GL----------iAygshs-lV~VVDs~s~q~iqsie~-h~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 17 NRNAADWSPSGL----------IAYGSHS-LVSVVDSRSLQLIQSIEL-HQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred cccccccCccce----------EEEecCc-eEEEEehhhhhhhhcccc-CccceeEEEeccCCCchhccCccccceeEEe
Confidence 356788998775 7887654 688899988888888888 99999999998731 13556
Q ss_pred EeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccC---C-CEEEE--ecCcEEEEECCCCceeEEeecCCCCeEEEEEC
Q 036605 91 VGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCE---E-KIFAL--ASSEVRILSLENGEEVLKFSDDVGPLQYVSAS 164 (340)
Q Consensus 91 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~---~-~~l~~--~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s 164 (340)
+.-.|.|.+||...+..+..+..+..++..++|-+. . ..|+. +...+.+|+..+|+.+-++........++.+.
T Consensus 85 aD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~D 164 (1062)
T KOG1912|consen 85 ADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVD 164 (1062)
T ss_pred ccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeC
Confidence 666799999999999988889989999999998763 3 23333 55569999999999887776666677778887
Q ss_pred CC-CCEEEEEEcCCCeEEEEEc
Q 036605 165 DG-AKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 165 ~~-~~~l~s~~~~d~~i~iwd~ 185 (340)
|- .+++...+. .|.+.+.+.
T Consensus 165 Pfd~rh~~~l~s-~g~vl~~~~ 185 (1062)
T KOG1912|consen 165 PFDSRHFCVLGS-KGFVLSCKD 185 (1062)
T ss_pred CCCcceEEEEcc-CceEEEEec
Confidence 73 455555555 677777765
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-05 Score=65.95 Aligned_cols=181 Identities=15% Similarity=0.193 Sum_probs=108.0
Q ss_pred CCCcEEEEEccCCeeEEEecCCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC
Q 036605 50 SNGDILAVDVLTGEMKWKSTGRH-PGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEK 128 (340)
Q Consensus 50 ~dg~i~i~d~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~ 128 (340)
.+|+|..||..+|+.+++..-.. .....+. ..+++..+++++.++.+..||..+|+.+..+... ..+.......++.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~ 78 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPVVDGGR 78 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEEEETTE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceeeecccc
Confidence 36899999999999999886311 1122211 2335778888899999999999999998887763 3322222333444
Q ss_pred EEEE-ecCcEEEEECCCCceeEEe-ecCC---CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCC
Q 036605 129 IFAL-ASSEVRILSLENGEEVLKF-SDDV---GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHS 203 (340)
Q Consensus 129 ~l~~-~~~~i~i~d~~~~~~~~~~-~~~~---~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (340)
.++. .++.++.+|..+|+.+..+ .... ..........++..++.+.. ++.|..+|. .+++............
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~--~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDP--KTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEET--TTTEEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEec--CCCcEEEEeecCCCCC
Confidence 4433 4567999999999988773 3221 11122222223667777676 899999997 4555433222111110
Q ss_pred C--------eeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 204 P--------VAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 204 ~--------~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
. ..... .. .++ .++.++.+|.+.-+|+.+++.
T Consensus 156 ~~~~~~~~~~~~~~--~~--~~~-~v~~~~~~g~~~~~d~~tg~~ 195 (238)
T PF13360_consen 156 SSPISSFSDINGSP--VI--SDG-RVYVSSGDGRVVAVDLATGEK 195 (238)
T ss_dssp S--EEEETTEEEEE--EC--CTT-EEEEECCTSSEEEEETTTTEE
T ss_pred Ccceeeecccccce--EE--ECC-EEEEEcCCCeEEEEECCCCCE
Confidence 0 01111 11 234 777778888644448888763
|
... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.2e-07 Score=72.10 Aligned_cols=203 Identities=14% Similarity=0.147 Sum_probs=127.5
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee-------------------------------------
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM------------------------------------- 64 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~------------------------------------- 64 (340)
..|..+.|..++. ...++..+.|.+|.+|.+.....
T Consensus 86 EKin~I~w~~~t~-------r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~i 158 (460)
T COG5170 86 EKINAIEWFDDTG-------RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEI 158 (460)
T ss_pred HHhhheeeecCCC-------cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceE
Confidence 4567788865542 12577778999999998643310
Q ss_pred E-----EEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCe---EEEEeecCC-----CCeeEEEEccCCCEEE
Q 036605 65 K-----WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGE---VIREFKASE-----KPISSSAFLCEEKIFA 131 (340)
Q Consensus 65 ~-----~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~-----~~i~~l~~~~~~~~l~ 131 (340)
+ +.+...|+-.|+++.|+.|...+++ +.|-.|.+|++.--. .+..++.|. .-|++..|+|....++
T Consensus 159 iaa~p~rvyaNaH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f 237 (460)
T COG5170 159 IAAKPCRVYANAHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVF 237 (460)
T ss_pred EEeccceeccccceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceE
Confidence 0 0112347778899999988887776 567799999876432 122233333 2477888999765443
Q ss_pred --E-ecCcEEEEECCCCce------eEE----------eecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCc
Q 036605 132 --L-ASSEVRILSLENGEE------VLK----------FSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTV 192 (340)
Q Consensus 132 --~-~~~~i~i~d~~~~~~------~~~----------~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~ 192 (340)
+ ..+.|++-|++.... +.. |..-...|..+.|+++|+|+++-.. -++.|||+++... .
T Consensus 238 mYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy--ltvkiwDvnm~k~-p 314 (460)
T COG5170 238 MYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY--LTVKIWDVNMAKN-P 314 (460)
T ss_pred EEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc--ceEEEEecccccC-C
Confidence 2 556699999984321 111 1222367889999999999998444 7999999974432 2
Q ss_pred cCCcee----------eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 193 NKGPAL----------SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 193 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
+....+ ..+.....-.+.+.+ +.+...+++|+..+..-+|-..
T Consensus 315 ikTi~~h~~l~~~l~d~YEnDaifdkFeisf-Sgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 315 IKTIPMHCDLMDELNDVYENDAIFDKFEISF-SGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ceeechHHHHHHHHHhhhhccceeeeEEEEe-cCCcccccccccccceeeeccc
Confidence 222110 001122222333455 7888899999998888877643
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.7e-07 Score=69.82 Aligned_cols=140 Identities=11% Similarity=0.082 Sum_probs=88.6
Q ss_pred EEEEEcCCCcEEEEEccCCe-eEEEecCCCCCCeEEEEEecCCCEEEEEeC-----CCcEEEEeCCCCeEEEEeecCCCC
Q 036605 44 LLALGTSNGDILAVDVLTGE-MKWKSTGRHPGGLAGLAFAKKGRSLHVVGT-----NGMASEMKSEMGEVIREFKASEKP 117 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----dg~i~~wd~~~~~~~~~~~~~~~~ 117 (340)
-++++..||.+.+++.+.-. ..+++...|.+ -.+.+....++.+.++.- -+..+.|+++..+.+..-+.....
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~ 181 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDA 181 (319)
T ss_pred ceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccccc
Confidence 48999999999999976521 11122211221 122223334555544321 234566666544333222222345
Q ss_pred eeEEEEccCCCEEEEec---CcEEEEECCCCcee-EEeecCCCCeEEEEECCC-CCEEEEEEcCCCeEEEEEc
Q 036605 118 ISSSAFLCEEKIFALAS---SEVRILSLENGEEV-LKFSDDVGPLQYVSASDG-AKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 118 i~~l~~~~~~~~l~~~~---~~i~i~d~~~~~~~-~~~~~~~~~v~~~~~s~~-~~~l~s~~~~d~~i~iwd~ 185 (340)
|++++-+|..+.++.++ +.+-+||.+..... ..+..|..+++.+.|+|. +..|++++. ||.+.-||.
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se-dGslw~wda 253 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE-DGSLWHWDA 253 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC-CCcEEEEcC
Confidence 89999999887776533 33999999987554 345889999999999885 567888777 999999996
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-05 Score=62.26 Aligned_cols=142 Identities=11% Similarity=0.029 Sum_probs=98.1
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-EEEE--eecCCCCeeE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGE-VIRE--FKASEKPISS 120 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~--~~~~~~~i~~ 120 (340)
-+..++.|.++++.+++.+.....+.. ..-.+..++.++|++++++.+....|..|.+.... .+.. .......-.+
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~-~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHN-QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeec-cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence 366778888898888876643333322 11238899999999999999999999999887543 2222 2223334467
Q ss_pred EEEccCCCEEEEe--cCcEEEEECCCCceeEE-----eecCCCCeEEEEECCCCCE-EEEEEcCCCeEEEEEcc
Q 036605 121 SAFLCEEKIFALA--SSEVRILSLENGEEVLK-----FSDDVGPLQYVSASDGAKI-IITAGYGEKHLQVWRCD 186 (340)
Q Consensus 121 l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~-l~s~~~~d~~i~iwd~~ 186 (340)
..|+.....+|++ ++.+.|||++....... -..|.+.++.+.|++-|.. |+.-+.+-+.+.+.|+|
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 7888888777774 55599999987544322 2457899999999976542 33334556889999985
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.4e-07 Score=80.33 Aligned_cols=158 Identities=9% Similarity=0.165 Sum_probs=114.0
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe---eEEEecCCCCCCeEEEEEecCC-CEEEEEeCCCcEE
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE---MKWKSTGRHPGGLAGLAFAKKG-RSLHVVGTNGMAS 98 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~ 98 (340)
.|-...|+|... -++-++......-.+|++.... ....+.+ |...|+.+-|+|.. ..|++++.|..+.
T Consensus 69 ~vad~qws~h~a-------~~~wiVsts~qkaiiwnlA~ss~~aIef~lhg-hsraitd~n~~~q~pdVlatcsvdt~vh 140 (1081)
T KOG0309|consen 69 QVADVQWSPHPA-------KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHG-HSRAITDINFNPQHPDVLATCSVDTYVH 140 (1081)
T ss_pred hhcceecccCCC-------CceeEEecCcchhhhhhhhcCCccceEEEEec-CccceeccccCCCCCcceeeccccccce
Confidence 355677887652 1267777777778889876432 3334455 99999999999865 4789999999999
Q ss_pred EEeCCCCe-EEEEeecCCCCeeEEEEcc-CCCEEEEec-CcEEEEECCCCc-eeEEeecCCCCeEEEEECCCC-CEEEEE
Q 036605 99 EMKSEMGE-VIREFKASEKPISSSAFLC-EEKIFALAS-SEVRILSLENGE-EVLKFSDDVGPLQYVSASDGA-KIIITA 173 (340)
Q Consensus 99 ~wd~~~~~-~~~~~~~~~~~i~~l~~~~-~~~~l~~~~-~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~s~ 173 (340)
.||+++-. ++..+..-......+.|+. ++..+++.. ++|++||++.|. ++..+++|...|..+.|..-- ..+.++
T Consensus 141 ~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~ 220 (1081)
T KOG0309|consen 141 AWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSS 220 (1081)
T ss_pred eeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhccc
Confidence 99998754 4445555556678888986 455666644 449999998764 557788899999999886532 245565
Q ss_pred EcCCCeEEEEEccCCC
Q 036605 174 GYGEKHLQVWRCDISS 189 (340)
Q Consensus 174 ~~~d~~i~iwd~~~~~ 189 (340)
+. |++|+.||....+
T Consensus 221 ~~-d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 221 SN-DGTVKFWDYSKST 235 (1081)
T ss_pred CC-CCceeeecccccc
Confidence 55 9999999985333
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.9e-07 Score=79.40 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=64.4
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
.+.+.|.|++++|+.. .|+.|+.||+|.+||...+... +.. ..-..+.++|+|+|..+++|+..|.+.
T Consensus 257 pL~s~v~~ca~sp~E~---------kLvlGC~DgSiiLyD~~~~~t~--~~k-a~~~P~~iaWHp~gai~~V~s~qGelQ 324 (545)
T PF11768_consen 257 PLPSQVICCARSPSED---------KLVLGCEDGSIILYDTTRGVTL--LAK-AEFIPTLIAWHPDGAIFVVGSEQGELQ 324 (545)
T ss_pred ecCCcceEEecCcccc---------eEEEEecCCeEEEEEcCCCeee--eee-ecccceEEEEcCCCcEEEEEcCCceEE
Confidence 4668899999999998 7999999999999998776432 223 455679999999999999999999999
Q ss_pred EEeCCCCeE
Q 036605 99 EMKSEMGEV 107 (340)
Q Consensus 99 ~wd~~~~~~ 107 (340)
+||+.-...
T Consensus 325 ~FD~ALspi 333 (545)
T PF11768_consen 325 CFDMALSPI 333 (545)
T ss_pred EEEeecCcc
Confidence 999865443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-06 Score=76.10 Aligned_cols=185 Identities=15% Similarity=0.178 Sum_probs=119.1
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMK 101 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd 101 (340)
..++|++++ ++ +|+.|+-+|.|++++.... . .+... |... ..+|.++++|+.||.|.+-.
T Consensus 40 D~is~~av~--~~---------~~~~GtH~g~v~~~~~~~~-~-~~~~~-~s~~------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 40 DAISCCAVH--DK---------FFALGTHRGAVYLTTCQGN-P-KTNFD-HSSS------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred hHHHHHHhh--cc---------eeeeccccceEEEEecCCc-c-ccccc-cccc------ccCCceEEEecCCCcEEEee
Confidence 456677776 56 8999999999999996543 3 22222 5444 56799999999999999999
Q ss_pred CCCCeEEEEeecCCCCeeEEEEccC-----CCEEEEecCc-EEEEECC--CCceeEEeecCCCCeEEEEECCCCCEEEEE
Q 036605 102 SEMGEVIREFKASEKPISSSAFLCE-----EKIFALASSE-VRILSLE--NGEEVLKFSDDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 102 ~~~~~~~~~~~~~~~~i~~l~~~~~-----~~~l~~~~~~-i~i~d~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 173 (340)
+-+.+....+.. ..++.+++++|+ .+.+++||.. +.++.-. ..+....+....++|.++.|. |.+|+-
T Consensus 100 l~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAW- 175 (846)
T KOG2066|consen 100 LFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAW- 175 (846)
T ss_pred ccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEE-
Confidence 988887776654 458899999998 4566776666 7666522 111112345567899999995 556666
Q ss_pred EcCCCeEEEEEccCCCCCccCCceeeecC-CCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 174 GYGEKHLQVWRCDISSKTVNKGPALSMRH-SPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
+. |--|+|||. ..++.+..+..+... .+..+.....| . +...|+.| +..+|.|..++
T Consensus 176 an-d~Gv~vyd~--~~~~~l~~i~~p~~~~R~e~fpphl~W-~-~~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 176 AN-DDGVKVYDT--PTRQRLTNIPPPSQSVRPELFPPHLHW-Q-DEDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred ec-CCCcEEEec--cccceeeccCCCCCCCCcccCCCceEe-c-CCCeEEEe-cCCeEEEEEEe
Confidence 55 677899998 444433322211111 11111121234 2 33445544 55569999887
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.9e-06 Score=73.73 Aligned_cols=176 Identities=15% Similarity=0.156 Sum_probs=114.7
Q ss_pred cCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEeCCCCeEEEEeecCCCCeeEEEEc
Q 036605 49 TSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN----GMASEMKSEMGEVIREFKASEKPISSSAFL 124 (340)
Q Consensus 49 ~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~ 124 (340)
-..+.+.+.|.++.+..+.+.- .+....+.++++|+++++.+.+ ..+...+..+...+..+... .+ .++.
T Consensus 212 ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~v 285 (635)
T PRK02888 212 KYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAV 285 (635)
T ss_pred ceeEEEEEEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhh
Confidence 3446777888888877776653 3355678899999999888643 23333333222222222111 01 1345
Q ss_pred cCCCEEEEecCcEEEEECCC----CceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCc-c------
Q 036605 125 CEEKIFALASSEVRILSLEN----GEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTV-N------ 193 (340)
Q Consensus 125 ~~~~~l~~~~~~i~i~d~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~-~------ 193 (340)
++|++....++.|.+.|..+ +..+..+..-......+.++|||+++++++..+.++.|+|+. +.+. .
T Consensus 286 kdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~--k~k~~~~~~~~~ 363 (635)
T PRK02888 286 KAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR--KLDDLFDGKIKP 363 (635)
T ss_pred hCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEECh--hhhhhhhccCCc
Confidence 67888877777799999988 333333333445678999999999999988889999999994 3211 0
Q ss_pred ---CCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 194 ---KGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 194 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
..-...++..|....+ .++|....+..-|..|..|++..
T Consensus 364 ~~~vvaevevGlGPLHTaF-----Dg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 364 RDAVVAEPELGLGPLHTAF-----DGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEEeeccCCCcceEEE-----CCCCCEEEeEeecceeEEEehHH
Confidence 0111122444444444 77888888999999999999876
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-05 Score=70.66 Aligned_cols=152 Identities=15% Similarity=0.070 Sum_probs=100.3
Q ss_pred CCCeEEEEeeccccccccccCceEEEEE---cCC-CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe-CCC
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALG---TSN-GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNG 95 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g---~~d-g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg 95 (340)
...+..-+|+|+++ .++.- ... ..++++++.+++....+. ..+.-...+|+|||+.|+.+. .||
T Consensus 192 ~~~~~~p~ws~~~~---------~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 192 GSLILTPAWSPDGK---------KLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeccccCcCCC---------ceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCC
Confidence 45566678999986 23322 222 469999999987554444 344556779999999877654 454
Q ss_pred --cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec-Cc----EEEEECCCCceeEEeecCCCCeEEEEECCCCC
Q 036605 96 --MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS-SE----VRILSLENGEEVLKFSDDVGPLQYVSASDGAK 168 (340)
Q Consensus 96 --~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-~~----i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 168 (340)
.|.++|+.++. +..+....+.-..-.|+|||+.++..+ +. |.++++..+.. ..+......-....++|||+
T Consensus 261 ~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 261 SPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCC
Confidence 46777887766 334554444444677999999986633 22 99999887754 44443333334788999999
Q ss_pred EEEEEEcCCCe--EEEEEc
Q 036605 169 IIITAGYGEKH--LQVWRC 185 (340)
Q Consensus 169 ~l~s~~~~d~~--i~iwd~ 185 (340)
+|+..+..+|. |.+.|+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred EEEEEeccCCceeeEEecc
Confidence 99988754455 444444
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-06 Score=78.23 Aligned_cols=137 Identities=15% Similarity=0.185 Sum_probs=102.2
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC---------CcEEEEeCCCCeEEEEeecC
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN---------GMASEMKSEMGEVIREFKAS 114 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---------g~i~~wd~~~~~~~~~~~~~ 114 (340)
++.+|...|+|.+-|..+.+.++++.. |++.|.++.. .|+.|++||.. ..|+|||++.-+.+.-+..+
T Consensus 189 ~lf~G~t~G~V~LrD~~s~~~iht~~a-Hs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~ 265 (1118)
T KOG1275|consen 189 NLFCGDTRGTVFLRDPNSFETIHTFDA-HSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP 265 (1118)
T ss_pred EEEeecccceEEeecCCcCceeeeeec-cccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc
Confidence 899999999999999999999999998 9999988766 49999999864 46899999887766555444
Q ss_pred CCCeeEEEEccCCC-EE--EEecCcEEEEE---CCCCc-eeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 115 EKPISSSAFLCEEK-IF--ALASSEVRILS---LENGE-EVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 115 ~~~i~~l~~~~~~~-~l--~~~~~~i~i~d---~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
.++ .-+.|+|.-. .+ ++.++...+-| +.+.. .+..+......+..+.+++++..++.+.. +|.|.+|.-
T Consensus 266 ~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~-~g~v~~wa~ 341 (1118)
T KOG1275|consen 266 YGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH-EGHVNLWAD 341 (1118)
T ss_pred cCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc-cCcEeeecC
Confidence 433 5566777532 22 33566677777 43331 12233333455899999999999999666 999999983
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.6e-05 Score=73.19 Aligned_cols=198 Identities=14% Similarity=0.160 Sum_probs=128.6
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEM 100 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~w 100 (340)
+..|.++.|..++. -++.+...|.|.+-|.++.... +-+.-...|.+++|+||+..++..+..+++.+.
T Consensus 68 d~~i~s~~fl~d~~---------~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~m 136 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN---------SICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFM 136 (1265)
T ss_pred CcceEEEEEecccc---------eEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEE
Confidence 46899999998887 6999999999999998877532 222255689999999999999988887777665
Q ss_pred eCC----C-------------------CeEEEEeecC---------------------CCCeeEEEEccCCCEEEE----
Q 036605 101 KSE----M-------------------GEVIREFKAS---------------------EKPISSSAFLCEEKIFAL---- 132 (340)
Q Consensus 101 d~~----~-------------------~~~~~~~~~~---------------------~~~i~~l~~~~~~~~l~~---- 132 (340)
+-. . |+....|.+. ...-.+|.|--||.++++
T Consensus 137 T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 137 TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 421 0 1111112211 011235889999999987
Q ss_pred -e-c-CcEEEEECCCCceeEEe-ecCCCCeEEEEECCCCCEEEEEEcC--CCeEEEEEccCCCCCccCCceeeecCCCe-
Q 036605 133 -A-S-SEVRILSLENGEEVLKF-SDDVGPLQYVSASDGAKIIITAGYG--EKHLQVWRCDISSKTVNKGPALSMRHSPV- 205 (340)
Q Consensus 133 -~-~-~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~- 205 (340)
. + +.|++||-+ |. +... ....+.-.+++|-|.|..+++.... |+.|.+|.- .|.....+.+...-...
T Consensus 217 ~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr---NGL~hg~f~l~~p~de~~ 291 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER---NGLRHGEFVLPFPLDEKE 291 (1265)
T ss_pred ccCCceeEEEeccc-ch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec---CCccccccccCCcccccc
Confidence 2 2 459999976 42 2222 2223445679999999888875442 667889884 44444444433222222
Q ss_pred eeeeecCCCCCCCCEEEE---EeCCCcEEEEECCC
Q 036605 206 AIDCKNSPNGEDGTVILA---VAESGVAYSWDLKT 237 (340)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~---~s~dg~i~vwd~~~ 237 (340)
+..+ .| ..++..|+. ......|++|-+.+
T Consensus 292 ve~L--~W-ns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 292 VEEL--AW-NSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred hhee--ee-cCCCCceeeeecccccceEEEEEecC
Confidence 4444 66 667777776 34444599998776
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-06 Score=77.46 Aligned_cols=208 Identities=9% Similarity=0.028 Sum_probs=133.4
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-eEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-MKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
+|+..|+.+.|.|... +.+++++.|-.+..||+.... .+..+.. -...-..|+|+-....+.+.+....|
T Consensus 112 ghsraitd~n~~~q~p--------dVlatcsvdt~vh~wd~rSp~~p~ys~~~-w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 112 GHSRAITDINFNPQHP--------DVLATCSVDTYVHAWDMRSPHRPFYSTSS-WRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred cCccceeccccCCCCC--------cceeeccccccceeeeccCCCcceeeeec-ccccCceeeecccCcchhhhccCCce
Confidence 7999999999998873 289999999999999998765 3334433 33466789998754444445777789
Q ss_pred EEEeCCCCe-EEEEeecCCCCeeEEEEccCC-CEEEE--ecCcEEEEECCCCceeE-EeecCCCCeEEEEECCCCCEEE-
Q 036605 98 SEMKSEMGE-VIREFKASEKPISSSAFLCEE-KIFAL--ASSEVRILSLENGEEVL-KFSDDVGPLQYVSASDGAKIII- 171 (340)
Q Consensus 98 ~~wd~~~~~-~~~~~~~~~~~i~~l~~~~~~-~~l~~--~~~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~- 171 (340)
.+||.+.|. ++..+++|...+..++|..-- ..+.+ .+++|+.||........ .......+|..-.|.|-|.-.+
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 999998764 677788888888888876532 12223 56669999987653332 2223346777777777544222
Q ss_pred EEEcCCCeEEEEEccCCCCC-----ccCCceeeecCCCeeeeeecCCC---------CCCCCEEEEEeCCCcEEEEECCC
Q 036605 172 TAGYGEKHLQVWRCDISSKT-----VNKGPALSMRHSPVAIDCKNSPN---------GEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 172 s~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.-..++..+.+++.+....+ ....+..-.+|...+..+ .|. ......|++=+.|..+++|-+.+
T Consensus 263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eF--lWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEF--LWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHH--hhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 22232445555554311111 122222223677666655 331 12234689999999999997765
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.8e-06 Score=71.22 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=108.1
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCC----
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG---- 95 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg---- 95 (340)
..-++..++|||.|+ +|++....| |.+|.......+.++. |. .|..+.|+|.+++|.+-+..+
T Consensus 31 ~~~p~~~~~~SP~G~---------~l~~~~~~~-V~~~~g~~~~~l~~~~--~~-~V~~~~fSP~~kYL~tw~~~pi~~p 97 (561)
T COG5354 31 ENWPVAYVSESPLGT---------YLFSEHAAG-VECWGGPSKAKLVRFR--HP-DVKYLDFSPNEKYLVTWSREPIIEP 97 (561)
T ss_pred cCcchhheeecCcch---------heehhhccc-eEEccccchhheeeee--cC-CceecccCcccceeeeeccCCccCh
Confidence 345788899999999 788776554 8999887776555555 44 799999999999999854433
Q ss_pred -----------cEEEEeCCCCeEEEEeecCCCC--ee-EEEEccCCCEEEE-ecCcEEEEECCCCce-eEEeec-CCCCe
Q 036605 96 -----------MASEMKSEMGEVIREFKASEKP--IS-SSAFLCEEKIFAL-ASSEVRILSLENGEE-VLKFSD-DVGPL 158 (340)
Q Consensus 96 -----------~i~~wd~~~~~~~~~~~~~~~~--i~-~l~~~~~~~~l~~-~~~~i~i~d~~~~~~-~~~~~~-~~~~v 158 (340)
.+.+||+.+|..+..+..-..+ .. -+.|+-+.++++- .+.+++++++ ++.. ...+.. ....+
T Consensus 98 e~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 98 EIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGI 176 (561)
T ss_pred hhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccce
Confidence 4999999999999888766555 44 6788888888765 5556999997 3321 111211 13567
Q ss_pred EEEEECCCCCE--EEEE----EcCCCeEEEEEcc
Q 036605 159 QYVSASDGAKI--IITA----GYGEKHLQVWRCD 186 (340)
Q Consensus 159 ~~~~~s~~~~~--l~s~----~~~d~~i~iwd~~ 186 (340)
....|+|.+.. |+.- ...++.++||.+.
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp 210 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP 210 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEcc
Confidence 78888887432 2221 1127889999984
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-05 Score=69.14 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=111.0
Q ss_pred cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe---CC-CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC
Q 036605 53 DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG---TN-GMASEMKSEMGEVIREFKASEKPISSSAFLCEEK 128 (340)
Q Consensus 53 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~---~d-g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~ 128 (340)
.+.+-|.. |.....+.. -...+..-+|+|++..++... .. ..+.++++.+++...... ....-...+|+|||+
T Consensus 174 ~l~~~D~d-g~~~~~l~~-~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLTD-SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEecc-cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 44444433 444444544 445678889999998765543 22 469999999887655544 223335577999999
Q ss_pred EEEEe-cC----cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCC
Q 036605 129 IFALA-SS----EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHS 203 (340)
Q Consensus 129 ~l~~~-~~----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (340)
.|+.. .+ +|+++|+.++. +..+....+.-..-.|+|||++++..++..|.-.||-.+.+.+.. ..+.......
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~ 328 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN 328 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC
Confidence 88662 22 29999998886 444544444455789999999999988888887777775444332 2233221211
Q ss_pred CeeeeeecCCCCCCCCEEEEEeCC-Cc--EEEEECCCC
Q 036605 204 PVAIDCKNSPNGEDGTVILAVAES-GV--AYSWDLKTV 238 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~l~~~s~d-g~--i~vwd~~~~ 238 (340)
. ...+ +|||.+++..+.. |. |.+.++.++
T Consensus 329 --~---~p~~-SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 329 --S---NPVW-SPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred --c---CccC-CCCCCEEEEEeccCCceeeEEeccCCC
Confidence 1 2244 8999999887753 44 555555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.1e-06 Score=75.16 Aligned_cols=152 Identities=13% Similarity=0.147 Sum_probs=112.6
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe---------------eEEEecCCCCCCeEEEEEecCC
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE---------------MKWKSTGRHPGGLAGLAFAKKG 85 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~---------------~~~~~~~~h~~~v~~v~~~~~~ 85 (340)
.....|++|..... ++|.|+.||.+++..+.+.. .-+++.+ |.+.|..+.|+...
T Consensus 14 nvkL~c~~WNke~g---------yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~ 83 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESG---------YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENN 83 (1189)
T ss_pred CceEEEEEEcccCC---------eEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEecccc
Confidence 35678999998888 99999999999998765432 1234566 99999999999988
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEe--ecCCCCeeEEEEccCCCEEEE--ecCcEEEEECCCCcee-EEeecCCCCeEE
Q 036605 86 RSLHVVGTNGMASEMKSEMGEVIREF--KASEKPISSSAFLCEEKIFAL--ASSEVRILSLENGEEV-LKFSDDVGPLQY 160 (340)
Q Consensus 86 ~~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~~~~~-~~~~~~~~~v~~ 160 (340)
+.|-+...+|.|.+|-+-.|.-...+ ...++.|.+++|+.+|..+.. .++.|.+=.+...+.- ..+.+ .....
T Consensus 84 QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~h 161 (1189)
T KOG2041|consen 84 QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAH 161 (1189)
T ss_pred ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccc
Confidence 99999999999999988776533332 234567889999999988754 6666655555443221 12222 23457
Q ss_pred EEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 161 VSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 161 ~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
+.|++|.+.++.+-. .|.+.+||-
T Consensus 162 v~ws~D~~~~Lf~~a-nge~hlydn 185 (1189)
T KOG2041|consen 162 VLWSEDLEQALFKKA-NGETHLYDN 185 (1189)
T ss_pred eeecccHHHHHhhhc-CCcEEEecc
Confidence 899999988888655 899999996
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-05 Score=71.44 Aligned_cols=135 Identities=11% Similarity=0.193 Sum_probs=98.7
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecC-----CCEEEEEeCCCcEEEEeCCC--CeEEEEeecCCC
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKK-----GRSLHVVGTNGMASEMKSEM--GEVIREFKASEK 116 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~l~s~~~dg~i~~wd~~~--~~~~~~~~~~~~ 116 (340)
++++|+.||+|.|..+.+.+....+. ...++.+++++|+ .+.+++||.-| +.++.-.= .+.-..+....+
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG 161 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEG 161 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCcc
Confidence 99999999999999999888777666 4558999999997 45789999888 76664221 111113556678
Q ss_pred CeeEEEEccCCCEEEEecCc-EEEEECCCCceeEEeecCCCC------eEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 117 PISSSAFLCEEKIFALASSE-VRILSLENGEEVLKFSDDVGP------LQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 117 ~i~~l~~~~~~~~l~~~~~~-i~i~d~~~~~~~~~~~~~~~~------v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
+|.++.|. |.++|-++.. |++||+.+++.+..+...... ...+.|.++.+ |+. |. ..+|+|..++
T Consensus 162 ~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVI-GW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 162 PIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVI-GW-GDSVKICSIK 233 (846)
T ss_pred ceEEEEec--CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEE-ec-CCeEEEEEEe
Confidence 99999997 6788887777 999999998877665432222 34577777664 444 45 5689999885
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00015 Score=64.39 Aligned_cols=183 Identities=18% Similarity=0.160 Sum_probs=106.3
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCC----CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC---
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPG----GLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEK--- 116 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~----~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--- 116 (340)
.+++++.+|.|..+|.++|+.++++...... ....... .+..++.++.+|.+..+|..+|+.+........
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~ 239 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA 239 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence 4777888999999999999999988641110 0011111 134577788899999999999987665432110
Q ss_pred -C---eeEEEEcc---CCCEEEE-ecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCC
Q 036605 117 -P---ISSSAFLC---EEKIFAL-ASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDIS 188 (340)
Q Consensus 117 -~---i~~l~~~~---~~~~l~~-~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~ 188 (340)
. ...+..+| ++..++. .++.+..+|..+|+.+-+... .....+.. .+..++.++. ++.+..+|. .
T Consensus 240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~-~g~l~ald~--~ 312 (394)
T PRK11138 240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQ-NDRVYALDT--R 312 (394)
T ss_pred cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcC-CCeEEEEEC--C
Confidence 0 00111122 3333333 355699999999987644321 11112222 3446666566 899988887 4
Q ss_pred CCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 189 SKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+++..-.... .... ... .. .-.+.+|+.++.+|.|+++|..+++.+.
T Consensus 313 tG~~~W~~~~-~~~~--~~~---sp-~v~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 313 GGVELWSQSD-LLHR--LLT---AP-VLYNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred CCcEEEcccc-cCCC--ccc---CC-EEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 5443211110 0010 000 00 1124578889999999999998887654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=66.66 Aligned_cols=147 Identities=13% Similarity=0.042 Sum_probs=97.7
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCC-EEEEEeCCCcE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGR-SLHVVGTNGMA 97 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i 97 (340)
.+...|..|+|||..+ .++..++-+..|.|.|+++...+..+.. | ..+++++|..+.. ++|.|...|.|
T Consensus 191 ~~g~~IrdlafSp~~~--------GLl~~asl~nkiki~dlet~~~vssy~a-~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNE--------GLLGLASLGNKIKIMDLETSCVVSSYIA-Y-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred ccchhhhhhccCcccc--------ceeeeeccCceEEEEecccceeeeheec-c-CCceeeeeccCCcceeEEeccCceE
Confidence 4667899999999885 1788999999999999999988877776 6 6899999988654 67778889999
Q ss_pred EEEeCCCCeE-EEEeec--CCCCeeEEE------EccCCCEEEEecCcEEEEECCCCc--eeEEe-ecCCCCeEEEEECC
Q 036605 98 SEMKSEMGEV-IREFKA--SEKPISSSA------FLCEEKIFALASSEVRILSLENGE--EVLKF-SDDVGPLQYVSASD 165 (340)
Q Consensus 98 ~~wd~~~~~~-~~~~~~--~~~~i~~l~------~~~~~~~l~~~~~~i~i~d~~~~~--~~~~~-~~~~~~v~~~~~s~ 165 (340)
.+||++..+. +..+.+ ...+|..++ ..+.|-+|+.+...+..|...... ....+ .+.++.+.++++.+
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 9999986542 222222 123344333 233455555555556677654321 11111 22356677777777
Q ss_pred CCCEEEEEEc
Q 036605 166 GAKIIITAGY 175 (340)
Q Consensus 166 ~~~~l~s~~~ 175 (340)
..+.++.+..
T Consensus 341 ~snh~l~tyR 350 (463)
T KOG1645|consen 341 VSNHLLLTYR 350 (463)
T ss_pred ccceEEEEec
Confidence 6666665444
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0001 Score=65.40 Aligned_cols=181 Identities=17% Similarity=0.176 Sum_probs=107.6
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEE-EEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCC-----
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAG-LAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKP----- 117 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~----- 117 (340)
.+++++.+|.++.+|.++|+.+++... . +.+.+ ... .+..++.+..++.+..+|..+|+.+..+......
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~-~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKV-A-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccC-C-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 577888999999999999999988764 2 22222 222 2456777888999999999999988776542111
Q ss_pred eeEEEEccCCCEEE-EecCcEEEEECCCCceeEEeecCC-C------CeEEEEECC--CCCEEEEEEcCCCeEEEEEccC
Q 036605 118 ISSSAFLCEEKIFA-LASSEVRILSLENGEEVLKFSDDV-G------PLQYVSASD--GAKIIITAGYGEKHLQVWRCDI 187 (340)
Q Consensus 118 i~~l~~~~~~~~l~-~~~~~i~i~d~~~~~~~~~~~~~~-~------~v~~~~~s~--~~~~l~s~~~~d~~i~iwd~~~ 187 (340)
..+..+. ++..++ ..++.+..+|..+|+.+-.+.... . ....+..+| .+..++.++. ++.+..+|.
T Consensus 198 ~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g~l~ald~-- 273 (394)
T PRK11138 198 ESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NGNLVALDL-- 273 (394)
T ss_pred CCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-CCeEEEEEC--
Confidence 0111222 233332 245558888999887664432110 0 000011112 2345666566 888888887
Q ss_pred CCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 188 SSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.+++..-... .... ... ...+..++.++.+|.++.+|..+++.+-
T Consensus 274 ~tG~~~W~~~--~~~~---~~~-----~~~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 274 RSGQIVWKRE--YGSV---NDF-----AVDGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred CCCCEEEeec--CCCc---cCc-----EEECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 4554322111 1110 001 1245678888899999999998876543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=71.70 Aligned_cols=189 Identities=11% Similarity=0.075 Sum_probs=122.9
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEe-cCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKS-TGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
+|...|.-+.|..+.+ -|-+...+|.|.+|-+-.|...... .....+-|.+++|+.||..+...-.||.|
T Consensus 69 GH~~sV~vvTWNe~~Q---------KLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 69 GHNASVMVVTWNENNQ---------KLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred cCcceEEEEEeccccc---------cccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence 8999999999998876 5899999999999998888643322 22256678999999999999999999999
Q ss_pred EEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE--ecCcEEEEECCCCce--------e---EEeecCCCCeEEEEE-
Q 036605 98 SEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL--ASSEVRILSLENGEE--------V---LKFSDDVGPLQYVSA- 163 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~~~~--------~---~~~~~~~~~v~~~~~- 163 (340)
.+=.++.. .+..-.........+.|++|.+.++. +.+.+.+||....-. + ..+......+..+.|
T Consensus 140 IVGsvdGN-RIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 140 IVGSVDGN-RIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred EEEeeccc-eecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 88776533 33221111223457889999876644 677799999754311 0 112222234555555
Q ss_pred -------CCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCC
Q 036605 164 -------SDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAES 227 (340)
Q Consensus 164 -------s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d 227 (340)
.|+...|+.+-. .|.+.|..- ..... . ..+ ...-.+... -| +++|..|+.++.+
T Consensus 219 ~g~~~~v~pdrP~lavcy~-nGr~QiMR~--eND~~-P-vv~--dtgm~~vga--kW-nh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYA-NGRMQIMRS--ENDPE-P-VVV--DTGMKIVGA--KW-NHNGAVLAVCGND 279 (1189)
T ss_pred cCccccCCCCCCEEEEEEc-Cceehhhhh--cCCCC-C-eEE--ecccEeecc--ee-cCCCcEEEEccCc
Confidence 457778888666 888887653 22111 1 111 111122222 55 7888888887765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00015 Score=66.76 Aligned_cols=194 Identities=13% Similarity=0.157 Sum_probs=116.3
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCC-eEEEEEecCCCEEEEEeCCC-----c
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGG-LAGLAFAKKGRSLHVVGTNG-----M 96 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~dg-----~ 96 (340)
.++| |++.+. .++.|+.+|.|.+++-. -+..+.++. +... |..+-...+.+.|++.+.|+ .
T Consensus 27 ~isc--~~s~~~---------~vvigt~~G~V~~Ln~s-~~~~~~fqa-~~~siv~~L~~~~~~~~L~sv~Ed~~~np~l 93 (933)
T KOG2114|consen 27 AISC--CSSSTG---------SVVIGTADGRVVILNSS-FQLIRGFQA-YEQSIVQFLYILNKQNFLFSVGEDEQGNPVL 93 (933)
T ss_pred ceeE--EcCCCc---------eEEEeeccccEEEeccc-ceeeehhee-cchhhhhHhhcccCceEEEEEeecCCCCceE
Confidence 5666 777776 79999999999999832 334466666 6555 55554444446888888774 4
Q ss_pred EEEEeCCCC---e---EE--EEee-----cCCCCeeEEEEccCCCEEEE--ecCcEEEEECC----CCceeEEeecCCCC
Q 036605 97 ASEMKSEMG---E---VI--REFK-----ASEKPISSSAFLCEEKIFAL--ASSEVRILSLE----NGEEVLKFSDDVGP 157 (340)
Q Consensus 97 i~~wd~~~~---~---~~--~~~~-----~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~----~~~~~~~~~~~~~~ 157 (340)
+++|+++.. + .+ +.+. ....++++++++.+-+.+++ ++|.|.++.-. .+....-......+
T Consensus 94 lkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~p 173 (933)
T KOG2114|consen 94 LKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEP 173 (933)
T ss_pred EEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCC
Confidence 899998643 1 12 1111 13567899999999877777 45557666421 11111111233579
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 158 LQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
|+.+.+..++..++.... ...|.+|.+ . ++..... ...+.+....+. ++ ++....+++++..+ +++|+...
T Consensus 174 ITgL~~~~d~~s~lFv~T-t~~V~~y~l--~-gr~p~~~--~ld~~G~~lnCs-s~-~~~t~qfIca~~e~-l~fY~sd~ 244 (933)
T KOG2114|consen 174 ITGLALRSDGKSVLFVAT-TEQVMLYSL--S-GRTPSLK--VLDNNGISLNCS-SF-SDGTYQFICAGSEF-LYFYDSDG 244 (933)
T ss_pred ceeeEEecCCceeEEEEe-cceeEEEEe--c-CCCccee--eeccCCccceee-ec-CCCCccEEEecCce-EEEEcCCC
Confidence 999999988887444445 678999998 3 2221111 123333333332 22 22222355555454 89998775
Q ss_pred C
Q 036605 238 V 238 (340)
Q Consensus 238 ~ 238 (340)
.
T Consensus 245 ~ 245 (933)
T KOG2114|consen 245 R 245 (933)
T ss_pred c
Confidence 3
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0015 Score=57.50 Aligned_cols=198 Identities=13% Similarity=0.124 Sum_probs=132.7
Q ss_pred EEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEe
Q 036605 25 SCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT---NGMASEMK 101 (340)
Q Consensus 25 ~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---dg~i~~wd 101 (340)
.+++.++.+. ..++....+..|.+.|..+.+......-+. ....++++++++.++.+.. ++.+.+.|
T Consensus 77 ~~i~v~~~~~--------~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid 146 (381)
T COG3391 77 AGVAVNPAGN--------KVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVID 146 (381)
T ss_pred cceeeCCCCC--------eEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEe
Confidence 4566666664 155666667899999988777666555322 5678999999998888766 68999999
Q ss_pred CCCCeEEEEeecCCCCeeEEEEccCCCEEEEec---CcEEEEECCCCceeE-E----eecCCCCeEEEEECCCCCEEEEE
Q 036605 102 SEMGEVIREFKASEKPISSSAFLCEEKIFALAS---SEVRILSLENGEEVL-K----FSDDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 102 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~~~~~~~-~----~~~~~~~v~~~~~s~~~~~l~s~ 173 (340)
..+++..........+ ..++++|+|..++.++ +.|.++|........ . +.. ......+.++++|.+++..
T Consensus 147 ~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 147 AATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred CCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEEEE
Confidence 9999888875554445 8899999999776644 339999977664442 1 111 2334678999999988876
Q ss_pred EcCC--CeEEEEEccCCCCCccCC-ceeeecCCCeeeeeecCCCCCCCCEEEEEeC-CCcEEEEECCCCCccC
Q 036605 174 GYGE--KHLQVWRCDISSKTVNKG-PALSMRHSPVAIDCKNSPNGEDGTVILAVAE-SGVAYSWDLKTVSQDE 242 (340)
Q Consensus 174 ~~~d--~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~-dg~i~vwd~~~~~~~~ 242 (340)
...+ +.+.+.|. ..+..... ...... .+..... .|+|.++.+... .+.+.+.|..+.....
T Consensus 225 ~~~~~~~~v~~id~--~~~~v~~~~~~~~~~-~~~~v~~-----~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 225 NDGSGSNNVLKIDT--ATGNVTATDLPVGSG-APRGVAV-----DPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred eccCCCceEEEEeC--CCceEEEeccccccC-CCCceeE-----CCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 6644 47777776 33322211 111111 2233333 788888877744 4789999888754443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0022 Score=52.31 Aligned_cols=157 Identities=13% Similarity=0.106 Sum_probs=92.4
Q ss_pred CCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 19 EPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
+....++.|+|.|+. + ++++....+.|..++. +|+.+.++.-...+..-+|++..++.++++--.++.+
T Consensus 19 g~~~e~SGLTy~pd~~t---------LfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L 88 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGT---------LFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRL 88 (248)
T ss_dssp T--S-EEEEEEETTTTE---------EEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEE
T ss_pred CccCCccccEEcCCCCe---------EEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcE
Confidence 555679999999985 6 7888888899999996 4777777754234578889998777776665568899
Q ss_pred EEEeCCCCe------EEEEee-----cCCCCeeEEEEccCCCEEEEecCc--EEEEECCC---CceeEEe--------ec
Q 036605 98 SEMKSEMGE------VIREFK-----ASEKPISSSAFLCEEKIFALASSE--VRILSLEN---GEEVLKF--------SD 153 (340)
Q Consensus 98 ~~wd~~~~~------~~~~~~-----~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~---~~~~~~~--------~~ 153 (340)
.++++.... ....+. .+...+-.++|+|.+..|+++... ..+|.+.. ...+... ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 988873321 111221 244568999999987766554332 55555543 2111111 12
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 154 DVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 154 ~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
....+.++.++|....|+.-+.....|.++|.
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence 33567889998876666655665888888885
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00086 Score=61.00 Aligned_cols=100 Identities=12% Similarity=0.155 Sum_probs=70.1
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCC----C-eEEEEeecCCCCeeEEEEccCCCEEEEecC---cEEEEECCCCce------
Q 036605 82 AKKGRSLHVVGTNGMASEMKSEM----G-EVIREFKASEKPISSSAFLCEEKIFALASS---EVRILSLENGEE------ 147 (340)
Q Consensus 82 ~~~~~~l~s~~~dg~i~~wd~~~----~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---~i~i~d~~~~~~------ 147 (340)
.++|++.+. .++.|.++|..+ + ..+..+.. ....+.+.++|||+++++++. ++.++|+.+.+.
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 457777665 356899999988 3 44444543 445689999999999988654 399999987653
Q ss_pred ------eEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 148 ------VLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 148 ------~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
..+..--.+ ....+|+++|....+ -.-|..|..|++.
T Consensus 362 ~~~~~vvaevevGlG-PLHTaFDg~G~ayts-lf~dsqv~kwn~~ 404 (635)
T PRK02888 362 KPRDAVVAEPELGLG-PLHTAFDGRGNAYTT-LFLDSQIVKWNIE 404 (635)
T ss_pred CccceEEEeeccCCC-cceEEECCCCCEEEe-EeecceeEEEehH
Confidence 233332223 356789999875444 4449999999984
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00022 Score=68.18 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=99.4
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEc----cC-------------------CeeEEEecC-----
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDV----LT-------------------GEMKWKSTG----- 70 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~----~~-------------------~~~~~~~~~----- 70 (340)
..+..|.+++||||+. +++..+..+++.+-.- -. |+....+.+
T Consensus 107 ~vd~GI~aaswS~Dee---------~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~ 177 (1265)
T KOG1920|consen 107 NVDNGISAASWSPDEE---------LLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQ 177 (1265)
T ss_pred eccCceEEEeecCCCc---------EEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhh
Confidence 4568899999999999 8999988888876432 00 111111211
Q ss_pred ------CCC---------CCeEEEEEecCCCEEEEEe----CC-CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEE
Q 036605 71 ------RHP---------GGLAGLAFAKKGRSLHVVG----TN-GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIF 130 (340)
Q Consensus 71 ------~h~---------~~v~~v~~~~~~~~l~s~~----~d-g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 130 (340)
.+. ..=+.|+|--||.++++.. .+ ..|++||-+ |..-..-.....--.+++|-|.|..+
T Consensus 178 ~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~i 256 (1265)
T KOG1920|consen 178 AARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLI 256 (1265)
T ss_pred cccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeE
Confidence 000 1123589999999888732 23 789999976 54332222223345689999999999
Q ss_pred EE-----ecCcEEEEECCCCce----eEEeecCCCCeEEEEECCCCCEEEE---EEcCCCeEEEEEc
Q 036605 131 AL-----ASSEVRILSLENGEE----VLKFSDDVGPLQYVSASDGAKIIIT---AGYGEKHLQVWRC 185 (340)
Q Consensus 131 ~~-----~~~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s---~~~~d~~i~iwd~ 185 (340)
++ .+++|.+|.- +|-. ...+......+..++|+.++..|+. ... ...|++|-+
T Consensus 257 A~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e-~~~v~lwt~ 321 (1265)
T KOG1920|consen 257 AAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLE-NSLVQLWTT 321 (1265)
T ss_pred eeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCceeeeecccc-cceEEEEEe
Confidence 87 2233888873 3322 2233444455899999999987776 333 455999987
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=73.67 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=84.5
Q ss_pred EEEEeeccccccccccCceEEEEEc----CCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 036605 25 SCLACGFVGKKRRKERGTLLLALGT----SNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEM 100 (340)
Q Consensus 25 ~~l~~sp~~~~~~~~~~~~~l~~g~----~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~w 100 (340)
+-..|+|... ++|+++ ..|.|.||- ++|++..... .+-.+++++|+|..-.|+.|-.-|.+.+|
T Consensus 19 ti~SWHPseP---------lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~ 86 (1416)
T KOG3617|consen 19 TISSWHPSEP---------LFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQ 86 (1416)
T ss_pred cccccCCCCc---------eeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEE
Confidence 4467999988 888876 458898884 5676554443 33456789999988888888888999999
Q ss_pred eCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECC
Q 036605 101 KSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLE 143 (340)
Q Consensus 101 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~ 143 (340)
...+.+.-.....|..+|..+.|||+|..+++++.- +.+|.+.
T Consensus 87 ~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 87 KTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 988776655566789999999999999999998765 8888765
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.4e-05 Score=69.29 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=82.7
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEM 100 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~w 100 (340)
...|.--++...++ +++.|+..|.+++|+-..+.....-.+.-.+.+..++.+++..+++.|+..|.|.++
T Consensus 33 ~~~v~lTc~dst~~---------~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 33 PARVKLTCVDATEE---------YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred cceEEEEEeecCCc---------eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEee
Confidence 33444444555577 999999999999999877764332222244566777888888889999999999999
Q ss_pred eCCCCeEE-----EEe-ecCCCCeeEEEEccCCCEEEEecCc--EEEEECCC
Q 036605 101 KSEMGEVI-----REF-KASEKPISSSAFLCEEKIFALASSE--VRILSLEN 144 (340)
Q Consensus 101 d~~~~~~~-----~~~-~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~ 144 (340)
-+..+.+- ... +.|+..|++++|++++..+++|+.. |.+..+.+
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 87654321 111 2367789999999999999998877 66665555
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.4e-05 Score=66.91 Aligned_cols=89 Identities=11% Similarity=0.080 Sum_probs=66.7
Q ss_pred EEEEccCCeeEE--EecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE
Q 036605 55 LAVDVLTGEMKW--KSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 55 ~i~d~~~~~~~~--~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 132 (340)
.+|+...++..+ ...-..+..|.+++++|+...|+.|+.||.|.+||...+.. .+....-.++.++|+|+|.++++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEE
Confidence 456665554221 11113778999999999999999999999999999876643 23334456789999999999988
Q ss_pred ecCc--EEEEECCCC
Q 036605 133 ASSE--VRILSLENG 145 (340)
Q Consensus 133 ~~~~--i~i~d~~~~ 145 (340)
++.. +.+||+.-.
T Consensus 317 ~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 317 GSEQGELQCFDMALS 331 (545)
T ss_pred EcCCceEEEEEeecC
Confidence 7765 999998654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.2e-05 Score=65.89 Aligned_cols=210 Identities=11% Similarity=0.081 Sum_probs=131.7
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC--C-eeEEEecCCCCCCeEEEEEecCCCEEEEEeC-CC
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT--G-EMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT-NG 95 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~--~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg 95 (340)
|...|+-+..+. .+ ++.+++.||.++.|.-.. | +.+..+.. |.+.|.+++.+-++..+.+.+. |.
T Consensus 8 hrd~i~hv~~tk-a~---------fiiqASlDGh~KFWkKs~isGvEfVKhFra-HL~~I~sl~~S~dg~L~~Sv~d~Dh 76 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AK---------FIIQASLDGHKKFWKKSRISGVEFVKHFRA-HLGVILSLAVSYDGWLFRSVEDPDH 76 (558)
T ss_pred ccceeeeEeeeh-hh---------eEEeeecchhhhhcCCCCccceeehhhhHH-HHHHHHhhhccccceeEeeccCccc
Confidence 555565544432 24 899999999999997543 2 12223333 8888999999999999999777 99
Q ss_pred cEEEEeCCCCeEEEEeecCCCCeeEEEEccCC---CEEEEe---cCcEEEEECCCCc-ee-EEeecCCCCeEEEEECCCC
Q 036605 96 MASEMKSEMGEVIREFKASEKPISSSAFLCEE---KIFALA---SSEVRILSLENGE-EV-LKFSDDVGPLQYVSASDGA 167 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~---~~l~~~---~~~i~i~d~~~~~-~~-~~~~~~~~~v~~~~~s~~~ 167 (340)
.++++|+.+-..+..++...-+-.+-.+...| ..+++. ++.+.++|-.... .. ..-.-|..+|..+.+.+.+
T Consensus 77 s~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred ceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence 99999998766553333211111111122222 123332 3338899976543 22 3336688999999999999
Q ss_pred CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeee-------ec-CCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 168 KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDC-------KN-SPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
..+++... .|.|.-|.....-+.....+.+.+.|....... .+ .+ ++++..+.+-+.|..|+++++++++
T Consensus 157 Ds~vSiD~-~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef-sp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 157 DSAVSIDI-SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF-SPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cceeeccc-cceeEeecCCCcccCccccccccccccchhhcccccccCccceEE-ccccCcccccCcccEEEEEEeccch
Confidence 98888665 899999997310011111122222222111100 00 22 8999999999999999999999866
Q ss_pred ccC
Q 036605 240 QDE 242 (340)
Q Consensus 240 ~~~ 242 (340)
...
T Consensus 235 lvq 237 (558)
T KOG0882|consen 235 LVQ 237 (558)
T ss_pred hhh
Confidence 554
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-06 Score=77.20 Aligned_cols=204 Identities=13% Similarity=0.126 Sum_probs=120.7
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE-EEecCCCCCCeEEEEEec-CCCEEEEEe----CCC
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK-WKSTGRHPGGLAGLAFAK-KGRSLHVVG----TNG 95 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~h~~~v~~v~~~~-~~~~l~s~~----~dg 95 (340)
.-+.|+++.-+.. + .++++|..+|.|.+-.+....-. +.+...|....++++|++ |.+.|+.|- .|.
T Consensus 57 qy~kcva~~y~~d-~------cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 57 QYVKCVASFYGND-R------CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCceeehhhcCCc-h------hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccC
Confidence 3567888865442 1 28999999999999887655422 444444888999999998 556676652 356
Q ss_pred cEEEEeCCCC--eEEEE--eec-CCCCeeEEEEccCCCEEEEecC--cEEEEECCCCcee-EEeecCCCCeEEEEECC-C
Q 036605 96 MASEMKSEMG--EVIRE--FKA-SEKPISSSAFLCEEKIFALASS--EVRILSLENGEEV-LKFSDDVGPLQYVSASD-G 166 (340)
Q Consensus 96 ~i~~wd~~~~--~~~~~--~~~-~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~-~~~~~~~~~v~~~~~s~-~ 166 (340)
.+.+||+.++ .+... |.. ......+++|..+.+.+.+|.. .+.++|++..... ..+ ....+..+..+| .
T Consensus 130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFS 207 (783)
T ss_pred CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCC
Confidence 7999999887 33222 222 2334568888888888777443 3999999843221 122 223566677777 5
Q ss_pred CCEEEEEEcCCCeEEEEEccCCCCCccCCcee-eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 167 AKIIITAGYGEKHLQVWRCDISSKTVNKGPAL-SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 167 ~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
+.|+.+ .. |+.|.+||-...-........- ....+.....+..+. ...|...+.--..+.|+++++..
T Consensus 208 ~nY~cs-~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycP-trtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 208 PNYFCS-NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCP-TRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCceec-cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEecc-CCcchhhhhccCcceEEEecccc
Confidence 667666 55 8999999931111111111110 001111233442232 22444333344457899998764
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0034 Score=54.02 Aligned_cols=174 Identities=13% Similarity=0.157 Sum_probs=96.5
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcC---------C-CcEEEEEccCC-----eeEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTS---------N-GDILAVDVLTG-----EMKW 66 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~---------d-g~i~i~d~~~~-----~~~~ 66 (340)
.|..+.+.+..+.-. ....++|++...-.... .....++++|+. . |.|.+|++... +...
T Consensus 7 ~d~~~~~~~~~~~l~---~~E~~~s~~~~~l~~~~--~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 7 VDPTTFEVLDSFELE---PNEHVTSLCSVKLKGDS--TGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EETTTSSEEEEEEEE---TTEEEEEEEEEEETTS-----SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EeCCCCeEEEEEECC---CCceEEEEEEEEEcCcc--ccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 466666666555422 33555555543211000 000128888764 2 89999999884 3222
Q ss_pred EecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-EEEEee-cCCCCeeEEEEccCCCEEEEecCc--EEEEEC
Q 036605 67 KSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGE-VIREFK-ASEKPISSSAFLCEEKIFALASSE--VRILSL 142 (340)
Q Consensus 67 ~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~ 142 (340)
.......++|++++-- .+ .|+. +.++.|.+|++...+ ....-. .....+.++... +.+++++|-. +.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEE-eecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2222267889999876 34 4444 334789999988777 443322 223345555544 5577776644 555533
Q ss_pred CC-CceeEEe--ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 143 EN-GEEVLKF--SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 143 ~~-~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
.. ...+..+ ......++++.|-+++..++.+.. +|.+.++..+
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~-~gnl~~l~~~ 202 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK-DGNLFVLRYN 202 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET-TSEEEEEEE-
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC-CCeEEEEEEC
Confidence 32 2223333 223456888888866666666555 9999999985
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.2e-05 Score=65.18 Aligned_cols=205 Identities=14% Similarity=0.028 Sum_probs=130.0
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcC-CCcEEEEEccCCeeEE--EecCCCCCCeEEEEEecC-CC-EEEEE-eC
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTS-NGDILAVDVLTGEMKW--KSTGRHPGGLAGLAFAKK-GR-SLHVV-GT 93 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~--~~~~~h~~~v~~v~~~~~-~~-~l~s~-~~ 93 (340)
|-..+.+++.+-++. ++++++. |..++++|+++-.... ++.. -++.+..+. ++. -. .++.. -.
T Consensus 52 HL~~I~sl~~S~dg~---------L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-lPg~a~wv~-skGd~~s~IAVs~~~ 120 (558)
T KOG0882|consen 52 HLGVILSLAVSYDGW---------LFRSVEDPDHSVKVFDVENFDMINMIKLVD-LPGFAEWVT-SKGDKISLIAVSLFK 120 (558)
T ss_pred HHHHHHhhhccccce---------eEeeccCcccceeEEEeeccchhhhccccc-CCCceEEec-CCCCeeeeEEeeccc
Confidence 555677788888888 8888777 9999999998765442 2222 233332221 221 11 33333 35
Q ss_pred CCcEEEEeCCCCe--EEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCC------Cc---------eeEEeecC
Q 036605 94 NGMASEMKSEMGE--VIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLEN------GE---------EVLKFSDD 154 (340)
Q Consensus 94 dg~i~~wd~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~------~~---------~~~~~~~~ 154 (340)
+|.+.++|-.... ....-+.|..+|.++.+.+.+..+++.+.. |.-|.... .+ -+..+...
T Consensus 121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~ 200 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA 200 (558)
T ss_pred CCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccc
Confidence 6999999966443 233344688899999999999988886543 88888762 11 11222334
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCce-------------eeec---------------CCCee
Q 036605 155 VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA-------------LSMR---------------HSPVA 206 (340)
Q Consensus 155 ~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~~---------------~~~~~ 206 (340)
.....++.|+|++..+.+.+. |..|+++++. ++.....+. ..+. .....
T Consensus 201 Kt~pts~Efsp~g~qistl~~-DrkVR~F~~K--tGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~ 277 (558)
T KOG0882|consen 201 KTEPTSFEFSPDGAQISTLNP-DRKVRGFVFK--TGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGST 277 (558)
T ss_pred ccCccceEEccccCcccccCc-ccEEEEEEec--cchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCc
Confidence 466789999999999999887 9999999983 332221110 0000 00111
Q ss_pred eeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 207 IDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 207 ~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
.....+| ...+.+|+-|+-=| |++.++.+...
T Consensus 278 ~~~~~~f-des~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 278 VGTNAVF-DESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred ccceeEE-cCCCCEEEeeccee-EEEEEeecCeE
Confidence 1112244 67789999999888 99999887443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0011 Score=62.45 Aligned_cols=139 Identities=10% Similarity=0.079 Sum_probs=96.5
Q ss_pred EEEE-EcCCCcEEEEEccCCeeEEEecCCCC-CCeEEEEEec-----CCCEEEEEeCCCcEEEEeCCCCe--EEEE-e--
Q 036605 44 LLAL-GTSNGDILAVDVLTGEMKWKSTGRHP-GGLAGLAFAK-----KGRSLHVVGTNGMASEMKSEMGE--VIRE-F-- 111 (340)
Q Consensus 44 ~l~~-g~~dg~i~i~d~~~~~~~~~~~~~h~-~~v~~v~~~~-----~~~~l~s~~~dg~i~~wd~~~~~--~~~~-~-- 111 (340)
+|+. ......|+-.|++.|+.+..+.. |. .+|..++-.. .....+.|-.+..+..||++-.. .+.. .
T Consensus 495 mil~~~~~~~~ly~mDLe~GKVV~eW~~-~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLERGKVVEEWKV-HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred eEeecCCCCCceEEEecCCCcEEEEeec-CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 4444 34567899999999999998887 44 3355554321 13356677788899999988642 2211 1
Q ss_pred ecCCCCeeEEEEccCCCEEEE-ecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 112 KASEKPISSSAFLCEEKIFAL-ASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 112 ~~~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
.......+|++-+.+|.+++. ..|+|++||--..+....+.+-..+|.+|..+.||+++++++ +..+.+++.
T Consensus 574 Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 123456789999998877644 667799999433333344567779999999999999999865 478888876
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.003 Score=50.57 Aligned_cols=92 Identities=13% Similarity=0.166 Sum_probs=66.3
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAF 123 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~ 123 (340)
+++.|+..|.+++.+..+|...+.+.....-.+. ....+++..++.++.|+..+..|..+...+.+.+.......+-++
T Consensus 65 fVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i 143 (354)
T KOG4649|consen 65 FVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVI 143 (354)
T ss_pred EEEEEEccCcEEEEEecchhheeeeeehhhhccc-eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecccee
Confidence 7999999999999999999888877641222222 234668999999999999999999998888877665554445555
Q ss_pred cc-CCCEE-EEecCc
Q 036605 124 LC-EEKIF-ALASSE 136 (340)
Q Consensus 124 ~~-~~~~l-~~~~~~ 136 (340)
.| ++.+. ++.++.
T Consensus 144 ~~g~~sly~a~t~G~ 158 (354)
T KOG4649|consen 144 APGDGSLYAAITAGA 158 (354)
T ss_pred cCCCceEEEEeccce
Confidence 55 34333 334444
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0018 Score=54.58 Aligned_cols=176 Identities=16% Similarity=0.146 Sum_probs=110.3
Q ss_pred CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeecCCC-----
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT----------NGMASEMKSEMGEVIREFKASEK----- 116 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~----------dg~i~~wd~~~~~~~~~~~~~~~----- 116 (340)
+.++++|..+++.+..+.. +..-.+..+|+++.+++++. .-.|.+||..+-.+..++.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~---g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT---GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE---ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeec---ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 5799999999998877765 34445778999999887532 23689999999988776543322
Q ss_pred --CeeEEEEccCCCEEEEecCc----EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCC
Q 036605 117 --PISSSAFLCEEKIFALASSE----VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSK 190 (340)
Q Consensus 117 --~i~~l~~~~~~~~l~~~~~~----i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~ 190 (340)
....++++.|++++++..-+ |.|.|+..++.+..+... . +...+......+.+-+. ||.+.-..++. .+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--G-C~~iyP~~~~~F~~lC~-DGsl~~v~Ld~-~G 168 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--G-CWLIYPSGNRGFSMLCG-DGSLLTVTLDA-DG 168 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--S-EEEEEEEETTEEEEEET-TSCEEEEEETS-TS
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--C-EEEEEecCCCceEEEec-CCceEEEEECC-CC
Confidence 22457889999999875443 999999999888777531 1 22233222234666566 99999999863 33
Q ss_pred CccCCceeeecC---CCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 191 TVNKGPALSMRH---SPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 191 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
+..... ..+-+ .+.+..- .+ ...+..++..+..|.|+-.|+....
T Consensus 169 k~~~~~-t~~F~~~~dp~f~~~--~~-~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 169 KEAQKS-TKVFDPDDDPLFEHP--AY-SRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp SEEEEE-EEESSTTTS-B-S----EE-ETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred CEeEee-ccccCCCCccccccc--ce-ECCCCeEEEEecCCEEEEEeccCCc
Confidence 322111 11111 1111111 11 2344566668899999998887643
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0014 Score=53.14 Aligned_cols=212 Identities=13% Similarity=0.122 Sum_probs=121.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCC-----CcEEEEEccCC-eeEEEecCCCCC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSN-----GDILAVDVLTG-EMKWKSTGRHPG 74 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~-~~~~~~~~~h~~ 74 (340)
|+|.+.++...........|-. ---.|||||+ +|++.-+| |.|-|||...+ +.+..+.. |.-
T Consensus 95 vfD~~~~~~pv~~~s~~~RHfy--GHGvfs~dG~---------~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t-~Gi 162 (366)
T COG3490 95 VFDPNGAQEPVTLVSQEGRHFY--GHGVFSPDGR---------LLYATENDFDPNRGVIGVYDAREGFQRVGEFST-HGI 162 (366)
T ss_pred EECCCCCcCcEEEecccCceee--cccccCCCCc---------EEEeecCCCCCCCceEEEEecccccceeccccc-CCc
Confidence 3556655554443321111111 1235899999 77765544 78999998754 23445555 766
Q ss_pred CeEEEEEecCCCEEEEEeC------C------------CcEEEEeCCCCeEEEEe--e--cCCCCeeEEEEccCCCEEEE
Q 036605 75 GLAGLAFAKKGRSLHVVGT------N------------GMASEMKSEMGEVIREF--K--ASEKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~------d------------g~i~~wd~~~~~~~~~~--~--~~~~~i~~l~~~~~~~~l~~ 132 (340)
.-..+.|.+||+.|+.+.. | .++.+.|..+|+.+.+. . .+...+..++..+||..++.
T Consensus 163 GpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 163 GPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred CcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEE
Confidence 7788999999998887543 1 23555565666655442 2 23456788888899888765
Q ss_pred ec----Cc---EEEEECCCCceeEEeec-------CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCcee
Q 036605 133 AS----SE---VRILSLENGEEVLKFSD-------DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPAL 198 (340)
Q Consensus 133 ~~----~~---i~i~d~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~ 198 (340)
+. .+ -.+=-...++.+.-+.. ....|-+++.+.+...++.++-..+...+||. .++.......+
T Consensus 243 cQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da--~tG~vv~~a~l 320 (366)
T COG3490 243 CQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA--ATGAVVSEAAL 320 (366)
T ss_pred EEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc--CCCcEEecccc
Confidence 32 21 11111233334333321 22567788887666666666665788899998 55544322221
Q ss_pred eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 199 SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.. ...+ .....-+++.+.+|.+.++.-.
T Consensus 321 --~d---aaGv-----a~~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 321 --PD---AAGV-----AAAKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred --cc---cccc-----eeccCceEEecCCceEEecccc
Confidence 11 0111 2333346667788988888543
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00045 Score=64.97 Aligned_cols=133 Identities=13% Similarity=0.114 Sum_probs=86.2
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe--eEEE-e-cCCCCCCeE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWK-S-TGRHPGGLA 77 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~-~-~~~h~~~v~ 77 (340)
.|+++|+++.+|.. +...+| ..+.|+.+-.. -...-.++|-.+..+..||.+-.. ++.. . .........
T Consensus 509 mDLe~GKVV~eW~~---~~~~~v--~~~~p~~K~aq--lt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 509 MDLERGKVVEEWKV---HDDIPV--VDIAPDSKFAQ--LTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred EecCCCcEEEEeec---CCCcce--eEecccccccc--cCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 37899999999992 233334 44555432000 001146778888899999987532 2211 1 111334567
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ecCcEEEEEC
Q 036605 78 GLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-ASSEVRILSL 142 (340)
Q Consensus 78 ~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~ 142 (340)
|++-+.+| +|+.|+.+|.|++||--..+....+.+-..+|..|.++.||+++++ +..-|.+++.
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 77766544 7899999999999995433333346666789999999999999866 5444777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0053 Score=49.20 Aligned_cols=129 Identities=17% Similarity=0.138 Sum_probs=90.8
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAF 123 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~ 123 (340)
+++.|+..+.+...|..+|+..+.-. -..+|-+-+.- -|..++.|...|.+++.+..+|.....+.....--.....
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 88899999999999999999887654 33455444433 3778999999999999999999888887654433344556
Q ss_pred ccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 124 LCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 124 ~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
.+++..+..++.+ .+..|.++...+.+.+-..+.-.+.++.|-...|+.+..
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t 155 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAIT 155 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEec
Confidence 7888888877665 888898888888775433333334455552223343344
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0015 Score=56.98 Aligned_cols=175 Identities=10% Similarity=0.086 Sum_probs=99.5
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCC--------
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRH-------- 72 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h-------- 72 (340)
|||+++++...... ....+....|||+|+ .+|... ++.|++++..++...+....+-
T Consensus 27 i~d~~~~~~~~l~~-----~~~~~~~~~~sP~g~---------~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~ 91 (353)
T PF00930_consen 27 IYDIETGEITPLTP-----PPPKLQDAKWSPDGK---------YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVP 91 (353)
T ss_dssp EEETTTTEEEESS------EETTBSEEEE-SSST---------EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB-
T ss_pred EEecCCCceEECcC-----CccccccceeecCCC---------eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCcc
Confidence 46777776554333 146788899999998 676664 6789999988875443222210
Q ss_pred --------CCCeEEEEEecCCCEEEEEeCC-Cc-----------------------------------EEEEeCCCCeEE
Q 036605 73 --------PGGLAGLAFAKKGRSLHVVGTN-GM-----------------------------------ASEMKSEMGEVI 108 (340)
Q Consensus 73 --------~~~v~~v~~~~~~~~l~s~~~d-g~-----------------------------------i~~wd~~~~~~~ 108 (340)
-+.-..+-||||+++|+....| .. +.++|+.+++..
T Consensus 92 dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~ 171 (353)
T PF00930_consen 92 DWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT 171 (353)
T ss_dssp -HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC
T ss_pred ceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE
Confidence 1223568899999998875433 22 223344333321
Q ss_pred E-Ee----ecCCCCeeEEEEccCCCEE-EE-ecCc-----EEEEECCCCceeEEee-cCCCC---eEEEEEC-CCCCEEE
Q 036605 109 R-EF----KASEKPISSSAFLCEEKIF-AL-ASSE-----VRILSLENGEEVLKFS-DDVGP---LQYVSAS-DGAKIII 171 (340)
Q Consensus 109 ~-~~----~~~~~~i~~l~~~~~~~~l-~~-~~~~-----i~i~d~~~~~~~~~~~-~~~~~---v~~~~~s-~~~~~l~ 171 (340)
. .. .....-+..+.|.+++..+ +. .++. +.++|..++.....+. ...+. -....|. +++..++
T Consensus 172 ~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l 251 (353)
T PF00930_consen 172 ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFL 251 (353)
T ss_dssp EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEE
T ss_pred EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEE
Confidence 1 11 1122346788899998844 33 3333 7788887775433221 12222 2355554 6666666
Q ss_pred EEEcCCCeEEEEEccCCCC
Q 036605 172 TAGYGEKHLQVWRCDISSK 190 (340)
Q Consensus 172 s~~~~d~~i~iwd~~~~~~ 190 (340)
..+..+|.-+||-++...+
T Consensus 252 ~~s~~~G~~hly~~~~~~~ 270 (353)
T PF00930_consen 252 WISERDGYRHLYLYDLDGG 270 (353)
T ss_dssp EEEETTSSEEEEEEETTSS
T ss_pred EEEEcCCCcEEEEEccccc
Confidence 6566788888877754444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00013 Score=61.32 Aligned_cols=149 Identities=13% Similarity=0.134 Sum_probs=91.5
Q ss_pred EEEEEccCCeeEEEecCCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE
Q 036605 54 ILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGR-SLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 54 i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 132 (340)
+++.+..+.+...-+.. |...|.+++|+|..+ ++..++.+..|.+.|+++...+..+..+ ..+++++|.-+....+-
T Consensus 175 v~~l~~~~fkssq~lp~-~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPG-EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccc-cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence 34444333333333344 778899999999877 6788899999999999999988888877 78999999988765544
Q ss_pred -ecCc--EEEEECCCCcee-EEeec--CCCCeEEEEEC------CCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeee
Q 036605 133 -ASSE--VRILSLENGEEV-LKFSD--DVGPLQYVSAS------DGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSM 200 (340)
Q Consensus 133 -~~~~--i~i~d~~~~~~~-~~~~~--~~~~v~~~~~s------~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 200 (340)
|... |.+||++..+.. ..+.+ ...+|..++.- +.+..++.+.. -+..|.+. .........+.+
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt---~l~f~ei~--~s~~~~p~vlel 327 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT---VLQFYEIV--FSAECLPCVLEL 327 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh---hhhhhhhh--ccccCCCccccc
Confidence 4433 999999876433 23322 22455554442 23434443322 45567762 222223333334
Q ss_pred cCCCeeeee
Q 036605 201 RHSPVAIDC 209 (340)
Q Consensus 201 ~~~~~~~~~ 209 (340)
+.+...+++
T Consensus 328 e~pG~cism 336 (463)
T KOG1645|consen 328 EPPGICISM 336 (463)
T ss_pred CCCcceeee
Confidence 444444444
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.5e-05 Score=66.38 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=76.8
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeE-EEEEecCCCEEEEEeCCCcEEE
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLA-GLAFAKKGRSLHVVGTNGMASE 99 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~l~s~~~dg~i~~ 99 (340)
...+.-+.|+|.-. ++|.+..+|.|.++.+. -+.++.+.- |...++ +++|.|||+.|+.|-.||+|++
T Consensus 20 ~~~i~~~ewnP~~d---------LiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L 88 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD---------LIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRL 88 (665)
T ss_pred ccceEEEEEcCccc---------hhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEE
Confidence 35677899999888 99999999999999887 556888876 666676 9999999999999999999999
Q ss_pred EeCCCCeEEEEee-cCCCCeeEEEEcc
Q 036605 100 MKSEMGEVIREFK-ASEKPISSSAFLC 125 (340)
Q Consensus 100 wd~~~~~~~~~~~-~~~~~i~~l~~~~ 125 (340)
.|+.++..+..+. .-...|.++-|.+
T Consensus 89 ~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 89 HDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEccCCCceeccccccccchheeeccc
Confidence 9999998776632 2344667776763
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00034 Score=64.52 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=61.5
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKS 102 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~ 102 (340)
.+++++|+|..- .|+.|-.-|.+.+|...+.+.. +....|+.+|..+.|+++|..|+++..-|.|.+|..
T Consensus 61 hatSLCWHpe~~---------vLa~gwe~g~~~v~~~~~~e~h-tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 61 HATSLCWHPEEF---------VLAQGWEMGVSDVQKTNTTETH-TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred ehhhhccChHHH---------HHhhccccceeEEEecCCceee-eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence 357799999887 8999999999999998776644 444459999999999999999999999999999976
Q ss_pred C
Q 036605 103 E 103 (340)
Q Consensus 103 ~ 103 (340)
.
T Consensus 131 d 131 (1416)
T KOG3617|consen 131 D 131 (1416)
T ss_pred e
Confidence 5
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0097 Score=50.37 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=88.9
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeec-----CCCCe
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKA-----SEKPI 118 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-----~~~~i 118 (340)
++.+--..+.|+-|+..+++. ..+. +.+.+.++..-..+..|+++.. -+.+++.+++..+..+.. .....
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~-~~~~--~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ 113 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKK-RVFP--SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRP 113 (307)
T ss_pred EEEEeCCCCeEEEecCCcCce-EEEE--CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCC
Confidence 666777788999999887752 2333 3445555555555666666543 355666665555333221 12345
Q ss_pred eEEEEccCCCEEEEecC-----c--------EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 119 SSSAFLCEEKIFALASS-----E--------VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~~~-----~--------i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
+.+.+.|+|.+.++.-. . ++.+|. .+..++.+..+-..-+.++||||++.++.+-...+.|.-|++
T Consensus 114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 67889999998877333 1 555554 455666666666667899999999988887775688888887
Q ss_pred c
Q 036605 186 D 186 (340)
Q Consensus 186 ~ 186 (340)
+
T Consensus 193 d 193 (307)
T COG3386 193 D 193 (307)
T ss_pred C
Confidence 4
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0037 Score=57.07 Aligned_cols=190 Identities=15% Similarity=0.246 Sum_probs=109.2
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCC-----CCe--EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHP-----GGL--AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEK 116 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~-----~~v--~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 116 (340)
.+++++.++.|+.+|..+|+.++++..... ..+ ..++.. ++..++.++.++.|..+|..+|+.+.++.....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 477788899999999999999988764111 011 111111 226788888999999999999999887654332
Q ss_pred C-----e-eEEEEccCCCEEEEe----------cCcEEEEECCCCceeEEeecCCC--------------------Ce-E
Q 036605 117 P-----I-SSSAFLCEEKIFALA----------SSEVRILSLENGEEVLKFSDDVG--------------------PL-Q 159 (340)
Q Consensus 117 ~-----i-~~l~~~~~~~~l~~~----------~~~i~i~d~~~~~~~~~~~~~~~--------------------~v-~ 159 (340)
. + ....+. ++.+++.. ++.+..+|..+|+.+-.+..... .+ .
T Consensus 142 ~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 142 VPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred cCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 1 1 122222 23333321 23488999999988766543211 01 1
Q ss_pred EEEECCCCCEEEEEEcCCC------------------eEEEEEccCCCCCccCCceeee--------cCCCeeeeeecCC
Q 036605 160 YVSASDGAKIIITAGYGEK------------------HLQVWRCDISSKTVNKGPALSM--------RHSPVAIDCKNSP 213 (340)
Q Consensus 160 ~~~~s~~~~~l~s~~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 213 (340)
..++.+.+..++.+.. ++ .|.-+|. .+++..-...... ...+.+... .
T Consensus 221 ~pa~d~~~g~V~vg~~-~g~~~~~~~~~~~~~~~~~~~l~Ald~--~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~--~- 294 (488)
T cd00216 221 SPTYDPKTNLVYVGTG-NGSPWNWGGRRTPGDNLYTDSIVALDA--DTGKVKWFYQTTPHDLWDYDGPNQPSLADI--K- 294 (488)
T ss_pred CeeEeCCCCEEEEECC-CCCCCccCCccCCCCCCceeeEEEEcC--CCCCEEEEeeCCCCCCcccccCCCCeEEec--c-
Confidence 2344444555666543 43 5666665 5554432221100 001111111 0
Q ss_pred CCCCC---CEEEEEeCCCcEEEEECCCCCccC
Q 036605 214 NGEDG---TVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 214 ~~~~~---~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.-++ ..+++++.+|.++.+|..+++.+-
T Consensus 295 -~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 295 -PKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred -ccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 0122 267888899999999999987765
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0079 Score=53.82 Aligned_cols=193 Identities=17% Similarity=0.221 Sum_probs=102.0
Q ss_pred eEEEEeeccccccccccCceEEEEE-cCCC----cEEEEEccCCeeEEEe-cCCCCCCeEEEEEecCCCEEEEEeCCC--
Q 036605 24 YSCLACGFVGKKRRKERGTLLLALG-TSNG----DILAVDVLTGEMKWKS-TGRHPGGLAGLAFAKKGRSLHVVGTNG-- 95 (340)
Q Consensus 24 v~~l~~sp~~~~~~~~~~~~~l~~g-~~dg----~i~i~d~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~dg-- 95 (340)
+....+||+++ ++|.+ +..| .|+++|+++|+.+... .. .....+.|.++++.|+....+.
T Consensus 126 ~~~~~~Spdg~---------~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 126 LGGFSVSPDGK---------RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEEETTTSS---------EEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE---EESEEEEECTTSSEEEEEECSTTT
T ss_pred eeeeeECCCCC---------EEEEEecCCCCceEEEEEEECCCCcCcCCcccc---cccceEEEeCCCCEEEEEEeCccc
Confidence 34578899998 67754 3334 5999999999865432 22 1122499999988776665432
Q ss_pred ---------cEEEEeCCCCeE--EEEeecCCCC--eeEEEEccCCCEEEE-----ec-CcEEEEECCCC----ceeEEee
Q 036605 96 ---------MASEMKSEMGEV--IREFKASEKP--ISSSAFLCEEKIFAL-----AS-SEVRILSLENG----EEVLKFS 152 (340)
Q Consensus 96 ---------~i~~wd~~~~~~--~~~~~~~~~~--i~~l~~~~~~~~l~~-----~~-~~i~i~d~~~~----~~~~~~~ 152 (340)
.|+.|.+.+... ...+...... ...+..++|+++++. .+ ..+++.|+..+ .....+.
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~ 273 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS 273 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE
T ss_pred ccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe
Confidence 378888776542 2344443333 467889999999865 12 23899999875 2334443
Q ss_pred cCCCCeE-EEEECCCCCEEEEEEcC--CCeEEEEEccCCCCCccCCceeeecCCC--eeeeeecCCCCC-CCCEEEEEeC
Q 036605 153 DDVGPLQ-YVSASDGAKIIITAGYG--EKHLQVWRCDISSKTVNKGPALSMRHSP--VAIDCKNSPNGE-DGTVILAVAE 226 (340)
Q Consensus 153 ~~~~~v~-~~~~s~~~~~l~s~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~l~~~s~ 226 (340)
.....+. .+... .+.+++.+..+ .+.|.-.++ ...........-+.+.. .+..+ .. .+.+++....
T Consensus 274 ~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l--~~~~~~~~~~~l~~~~~~~~l~~~-----~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 274 PREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDL--ADPSPAEWWTVLIPEDEDVSLEDV-----SLFKDYLVLSYRE 345 (414)
T ss_dssp ESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEET--TSTSGGGEEEEEE--SSSEEEEEE-----EEETTEEEEEEEE
T ss_pred CCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecc--cccccccceeEEcCCCCceeEEEE-----EEECCEEEEEEEE
Confidence 3333333 33333 44444443332 345555555 33322111112223332 23333 22 2334444444
Q ss_pred CC--cEEEEECC
Q 036605 227 SG--VAYSWDLK 236 (340)
Q Consensus 227 dg--~i~vwd~~ 236 (340)
++ .|+++++.
T Consensus 346 ~~~~~l~v~~~~ 357 (414)
T PF02897_consen 346 NGSSRLRVYDLD 357 (414)
T ss_dssp TTEEEEEEEETT
T ss_pred CCccEEEEEECC
Confidence 54 47888888
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0051 Score=52.04 Aligned_cols=142 Identities=13% Similarity=0.080 Sum_probs=91.5
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcC-----------CCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTS-----------NGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHV 90 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~-----------dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s 90 (340)
...+.+...|+|+ +.+.... -|.|+.+|. .+.....+.. +-..-+.|+||||++.|+.
T Consensus 111 ~r~ND~~v~pdG~---------~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 111 NRPNDGVVDPDGR---------IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-DLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred CCCCceeEcCCCC---------EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-cEEecCceEECCCCCEEEE
Confidence 4455667778877 3333222 144555554 4555555554 5556689999999999988
Q ss_pred EeCC-CcEEEEeCCC--Ce-----EEEEeecCCCCeeEEEEccCCCEEEE--ec-CcEEEEECCCCceeEEeecCCCCeE
Q 036605 91 VGTN-GMASEMKSEM--GE-----VIREFKASEKPISSSAFLCEEKIFAL--AS-SEVRILSLENGEEVLKFSDDVGPLQ 159 (340)
Q Consensus 91 ~~~d-g~i~~wd~~~--~~-----~~~~~~~~~~~i~~l~~~~~~~~l~~--~~-~~i~i~d~~~~~~~~~~~~~~~~v~ 159 (340)
+... +.|..|++.. +. ....+.......-.+++..+|.+.++ .+ ..|.+|+.. ++.+..+......++
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 8665 7888887652 11 11223334455667888888888744 22 269999988 888888877767788
Q ss_pred EEEE-CCCCCEEEEEEc
Q 036605 160 YVSA-SDGAKIIITAGY 175 (340)
Q Consensus 160 ~~~~-s~~~~~l~s~~~ 175 (340)
+++| .++.+.|+.++.
T Consensus 259 ~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 259 NPAFGGPDLNTLYITSA 275 (307)
T ss_pred cceEeCCCcCEEEEEec
Confidence 8888 455555555444
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0063 Score=56.44 Aligned_cols=147 Identities=13% Similarity=0.132 Sum_probs=85.6
Q ss_pred CCeEEEEeeccccccccccCceEEEEEc------CC--CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGT------SN--GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT 93 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~------~d--g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~ 93 (340)
..+...+.||+|+ .+|... .| ..|.+++. .+.. ..+.. ....+...|+|+|..|++...
T Consensus 350 ~~vsspaiSpdG~---------~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~--g~~~t~PsWspDG~~lw~v~d 416 (591)
T PRK13616 350 GNITSAALSRSGR---------QVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE--GHSLTRPSWSLDADAVWVVVD 416 (591)
T ss_pred cCcccceECCCCC---------EEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec--CCCCCCceECCCCCceEEEec
Confidence 4677889999997 455443 23 35666664 2322 33332 124788999999888877653
Q ss_pred C------------CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ecCcEEE---EECCCCce-e---EEeec
Q 036605 94 N------------GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-ASSEVRI---LSLENGEE-V---LKFSD 153 (340)
Q Consensus 94 d------------g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~~i~i---~d~~~~~~-~---~~~~~ 153 (340)
. +.+.+.++..+.... .....|..+.|||||..++. .++.|++ -....|.. + ..+..
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec
Confidence 3 233333443333222 22457999999999998865 5566655 44444531 1 12222
Q ss_pred -CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 154 -DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 154 -~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
-...+.++.|.+++..+ .+.. ++...+|.+.
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~-~~~~~v~~v~ 525 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRS-DPEHPVWYVN 525 (591)
T ss_pred ccCCccccceEecCCEEE-EEec-CCCCceEEEe
Confidence 22335889999999755 4344 4444566654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.012 Score=48.13 Aligned_cols=158 Identities=9% Similarity=0.003 Sum_probs=102.7
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
+....++++.|+|+.+ .|++..+...-.++=..+|+.+.++.-..-...-.+.+..++++.++--.+..+.
T Consensus 83 g~~~nvS~LTynp~~r---------tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 83 GETANVSSLTYNPDTR---------TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccceeeCCCcc---------eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEE
Confidence 4556699999999998 7888888888888877788888876532223345677777777777766778887
Q ss_pred EEeCCCCeEEEE-----e-----ecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeE--Ee-ecC-------CC
Q 036605 99 EMKSEMGEVIRE-----F-----KASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVL--KF-SDD-------VG 156 (340)
Q Consensus 99 ~wd~~~~~~~~~-----~-----~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~--~~-~~~-------~~ 156 (340)
++.+..+..+.. + .........++|.|....|..+-.. +.||....+.... .. ..+ -.
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL 233 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence 776655432211 1 1124567899999998888775544 5555544332111 10 111 14
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
.+.++.|.+....+++-+..++.+.-.|.
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEec
Confidence 57778888765555555665788877776
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0018 Score=55.80 Aligned_cols=177 Identities=13% Similarity=0.067 Sum_probs=99.9
Q ss_pred CcEEEEEccCCeeEEEecCCCCCCeEEEE---EecC----CCEEEEEeC----------CCcEEEEeCCCC----eEEEE
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPGGLAGLA---FAKK----GRSLHVVGT----------NGMASEMKSEMG----EVIRE 110 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~~v~~v~---~~~~----~~~l~s~~~----------dg~i~~wd~~~~----~~~~~ 110 (340)
+.|+++|..+.+.+..+.-.....+.+++ +..+ ..+++.|.. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35778887777665554321233444444 3322 346666543 288999999884 12221
Q ss_pred e--ecCCCCeeEEEEccCCCEEEEecCcEEEEECCCCc-eeEE-eecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 111 F--KASEKPISSSAFLCEEKIFALASSEVRILSLENGE-EVLK-FSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 111 ~--~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~-~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
+ ....++|++++-- .+.++++.+..|.+|++...+ .... +......+.++... +.+++.+.. ...+.++.++
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~-~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDA-MKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEES-SSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEc-ccCEEEEEEE
Confidence 1 2346788988876 556667778889999998877 3322 22223355555554 558888666 7888888764
Q ss_pred CCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 187 ISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
. .......+.- -..+.++.++ .+ -.++..++++..+|.+.++....
T Consensus 158 ~-~~~~l~~va~-d~~~~~v~~~--~~-l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 158 E-ENNKLILVAR-DYQPRWVTAA--EF-LVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp T-TTE-EEEEEE-ESS-BEEEEE--EE-E-SSSEEEEEETTSEEEEEEE-S
T ss_pred c-cCCEEEEEEe-cCCCccEEEE--EE-ecCCcEEEEEcCCCeEEEEEECC
Confidence 2 1111111111 1122233333 33 22335899999999999998864
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0074 Score=56.15 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=96.2
Q ss_pred EEEEEcCCC-----cEEEEEccCC------eeE--EEecC----CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC--
Q 036605 44 LLALGTSNG-----DILAVDVLTG------EMK--WKSTG----RHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEM-- 104 (340)
Q Consensus 44 ~l~~g~~dg-----~i~i~d~~~~------~~~--~~~~~----~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~-- 104 (340)
+|++-+.|+ .|+||+++.- .+. +++.. ..+.++.+++.+.+-+.++.|-.+|.|..+.-.-
T Consensus 79 ~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R 158 (933)
T KOG2114|consen 79 FLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR 158 (933)
T ss_pred EEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh
Confidence 677666554 5899998643 122 12211 1356788999999888899999999999885221
Q ss_pred --CeEEEEeecCCCCeeEEEEccCCCE--EEEecCcEEEEECCCCce-eEEeecCCCCeEEEEECCCCCEEEEEEcCCCe
Q 036605 105 --GEVIREFKASEKPISSSAFLCEEKI--FALASSEVRILSLENGEE-VLKFSDDVGPLQYVSASDGAKIIITAGYGEKH 179 (340)
Q Consensus 105 --~~~~~~~~~~~~~i~~l~~~~~~~~--l~~~~~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~ 179 (340)
|...........+|+.+++..++.. +++....|.+|.+....+ ...+..|..+..+..|++....+++++ +..
T Consensus 159 Drgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~ 236 (933)
T KOG2114|consen 159 DRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEF 236 (933)
T ss_pred ccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--Cce
Confidence 1112223345679999999999887 455666699999985442 344677778889999987766466644 478
Q ss_pred EEEEEc
Q 036605 180 LQVWRC 185 (340)
Q Consensus 180 i~iwd~ 185 (340)
+.+|+.
T Consensus 237 l~fY~s 242 (933)
T KOG2114|consen 237 LYFYDS 242 (933)
T ss_pred EEEEcC
Confidence 999996
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0049 Score=55.99 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=59.1
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-----eEEEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-----MKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG 95 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg 95 (340)
...+..+..|++.. ++|+|+..|.|.++.+..+. ....+...|...|++++|++++..+|+|...|
T Consensus 76 ~~~~~~~~vs~~e~---------lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~G 146 (726)
T KOG3621|consen 76 TGITCVRSVSSVEY---------LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQG 146 (726)
T ss_pred cceEEEEEecchhH---------hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCc
Confidence 34455566788888 89999999999999877643 22233335788999999999999999999999
Q ss_pred cEEEEeCCC
Q 036605 96 MASEMKSEM 104 (340)
Q Consensus 96 ~i~~wd~~~ 104 (340)
.|..-.+.+
T Consensus 147 kv~~~~L~s 155 (726)
T KOG3621|consen 147 KVVLTELDS 155 (726)
T ss_pred eEEEEEech
Confidence 998877665
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.019 Score=52.48 Aligned_cols=183 Identities=17% Similarity=0.162 Sum_probs=99.6
Q ss_pred CCCcEEEEEccCCeeEEEecCCCCC-------------------Ce-EEEEEecCCCEEEEEeCCC--------------
Q 036605 50 SNGDILAVDVLTGEMKWKSTGRHPG-------------------GL-AGLAFAKKGRSLHVVGTNG-------------- 95 (340)
Q Consensus 50 ~dg~i~i~d~~~~~~~~~~~~~h~~-------------------~v-~~v~~~~~~~~l~s~~~dg-------------- 95 (340)
.+|.|+.+|..+|+.++++...... .| ...++.+.+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 3688999999999999887542110 01 1234445567788877665
Q ss_pred ----cEEEEeCCCCeEEEEeecCCCCe------eEEEEc----cCCC---EEEEe--cCcEEEEECCCCceeEEeecCCC
Q 036605 96 ----MASEMKSEMGEVIREFKASEKPI------SSSAFL----CEEK---IFALA--SSEVRILSLENGEEVLKFSDDVG 156 (340)
Q Consensus 96 ----~i~~wd~~~~~~~~~~~~~~~~i------~~l~~~----~~~~---~l~~~--~~~i~i~d~~~~~~~~~~~~~~~ 156 (340)
.|.-+|..+|+.+..+....... ....+. -++. .++.+ ++.+..+|..+|+.+-.....
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-- 330 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-- 330 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence 79999999999987765322111 111111 1232 34444 455999999999887554321
Q ss_pred CeEEEEECCCCCEEEEEE-----------------cCCCeEEEEEccCCCCCccCCceeeecC-C----CeeeeeecCCC
Q 036605 157 PLQYVSASDGAKIIITAG-----------------YGEKHLQVWRCDISSKTVNKGPALSMRH-S----PVAIDCKNSPN 214 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~-----------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~ 214 (340)
...+..+| + .++... ..++.+.-.|+ .+++..-........ . ...... ..
T Consensus 331 -~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~--~tG~~~W~~~~~~~~~~~~~g~~~~~~--~~- 402 (488)
T cd00216 331 -EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP--KTGKVVWEKREGTIRDSWNIGFPHWGG--SL- 402 (488)
T ss_pred -ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeC--CCCcEeeEeeCCccccccccCCcccCc--ce-
Confidence 01122333 1 222211 11345555555 344332221110000 0 000000 00
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 215 GEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 215 ~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
...+..|++++.||.|+.+|..+++.+-
T Consensus 403 ~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 403 ATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred EecCCeEEEECCCCeEEEEECCCCceee
Confidence 1245678889999999999999988776
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.7e-05 Score=69.76 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=109.3
Q ss_pred EEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc----EEEE
Q 036605 65 KWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE----VRIL 140 (340)
Q Consensus 65 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~----i~i~ 140 (340)
...+.. |....+|++|+.+.+.|+.|+..|.|+++++.+|.......+|..+++-+.-+.+|..+++.+.. ..+|
T Consensus 1094 w~~frd-~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFRD-ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred chhhhc-cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 334555 88889999999999999999999999999999999999999999999999999999888763322 7799
Q ss_pred ECCC-CceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCC
Q 036605 141 SLEN-GEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGT 219 (340)
Q Consensus 141 d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (340)
++.+ +.....|. .-.++.|+.....-+.+.. .....+||+ .++.....+............+ ..| +|+..
T Consensus 1173 ~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~-~d~a~~YDv--qT~~~l~tylt~~~~~~y~~n~-a~F-sP~D~ 1243 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD----EDKAVKFSNSLQFRALGTE-ADDALLYDV--QTCSPLQTYLTDTVTSSYSNNL-AHF-SPCDT 1243 (1516)
T ss_pred ccccccCcccccc----ccceeehhhhHHHHHhccc-ccceEEEec--ccCcHHHHhcCcchhhhhhccc-ccc-CCCcc
Confidence 9865 33334443 2456788776555455444 467789999 4543332211000001111111 133 77777
Q ss_pred EEEEEeCCCcEEEEECCCCCcc
Q 036605 220 VILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 220 ~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
.++ +|| .+||++..+.+
T Consensus 1244 LIl---ndG--vLWDvR~~~aI 1260 (1516)
T KOG1832|consen 1244 LIL---NDG--VLWDVRIPEAI 1260 (1516)
T ss_pred eEe---eCc--eeeeeccHHHH
Confidence 665 466 35888764433
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=39.44 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=32.5
Q ss_pred eeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 036605 63 EMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMK 101 (340)
Q Consensus 63 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd 101 (340)
+....+.. |...|.++.|++++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKG-HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEe-cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34455565 888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0078 Score=48.86 Aligned_cols=151 Identities=16% Similarity=0.157 Sum_probs=82.6
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC-----eeEEE--ecCCCCCCeEEEEEecCCCEEEEEeC
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG-----EMKWK--STGRHPGGLAGLAFAKKGRSLHVVGT 93 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-----~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~~~ 93 (340)
...|..|.|.+... ......-|++-...|.++-|-+..+ +..+. +...++..|.++.++|..++|+.||.
T Consensus 91 ~~Aiagl~Fl~~~~---s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 91 SDAIAGLIFLEYKK---SAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred ccceeeeEeecccc---ccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 45677777764321 1222224555567888887776432 23333 33335779999999999888888775
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEE---EE-------ecCcEEEEECCCCceeEEeecCCCCeEEEEE
Q 036605 94 NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIF---AL-------ASSEVRILSLENGEEVLKFSDDVGPLQYVSA 163 (340)
Q Consensus 94 dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l---~~-------~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 163 (340)
... +.+. .++....+++-.+-.+..+. .. ......+|.+-+.+...........|..|..
T Consensus 168 ~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 168 EQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 422 0000 01111222222221111111 11 1111233333332221111234567999999
Q ss_pred CCCCCEEEEEEcCCCeEEEEEc
Q 036605 164 SDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 164 s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
||||..|++... +|.|.+|++
T Consensus 238 SPdg~~La~ih~-sG~lsLW~i 258 (282)
T PF15492_consen 238 SPDGSLLACIHF-SGSLSLWEI 258 (282)
T ss_pred CCCCCEEEEEEc-CCeEEEEec
Confidence 999999999888 999999999
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0079 Score=50.78 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=92.1
Q ss_pred EEEEEcCCCcEEEEEcc-CCeeEEEe----cCCCCCCe-EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEE--Eeec--
Q 036605 44 LLALGTSNGDILAVDVL-TGEMKWKS----TGRHPGGL-AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIR--EFKA-- 113 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~-~~~~~~~~----~~~h~~~v-~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~~~-- 113 (340)
-+.+-+.||.+.-+.+. .|+...+. .. -..++ ..-++...+..++..+.+|.|+-.|+....... .+..
T Consensus 149 ~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~-~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 149 GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP-DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp EEEEEETTSCEEEEEETSTSSEEEEEEEESST-TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred ceEEEecCCceEEEEECCCCCEeEeeccccCC-CCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 47777889999998887 55543222 11 22223 344556666667767999999998887654322 2211
Q ss_pred --------CCCCeeEEEEccCCCEEEE-e----c-------CcEEEEECCCCceeEEeecCCCCeEEEEECCCCC-EEEE
Q 036605 114 --------SEKPISSSAFLCEEKIFAL-A----S-------SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAK-IIIT 172 (340)
Q Consensus 114 --------~~~~i~~l~~~~~~~~l~~-~----~-------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s 172 (340)
-.+.-.-+++++....|++ . . ..|++||+.+++.+.++.. ..++.++..+.+.+ +|++
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEE
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEE
Confidence 1123456788876666544 1 1 1199999999999988863 24577899988776 5555
Q ss_pred EEcCCCeEEEEEccCCCCCccC
Q 036605 173 AGYGEKHLQVWRCDISSKTVNK 194 (340)
Q Consensus 173 ~~~~d~~i~iwd~~~~~~~~~~ 194 (340)
....++.+.+||. .+++...
T Consensus 307 ~~~~~~~l~v~D~--~tGk~~~ 326 (342)
T PF06433_consen 307 LSAGDGTLDVYDA--ATGKLVR 326 (342)
T ss_dssp EETTTTEEEEEET--TT--EEE
T ss_pred EcCCCCeEEEEeC--cCCcEEe
Confidence 4555899999998 4555443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=1.1e-05 Score=71.53 Aligned_cols=158 Identities=9% Similarity=0.001 Sum_probs=104.2
Q ss_pred CCCCCeEEEEeeccc-cccccccCceEEEEEc----CCCcEEEEEccCC--e--eEEEecCCCCCCeEEEEEecCCCEEE
Q 036605 19 EPVVSYSCLACGFVG-KKRRKERGTLLLALGT----SNGDILAVDVLTG--E--MKWKSTGRHPGGLAGLAFAKKGRSLH 89 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~----~dg~i~i~d~~~~--~--~~~~~~~~h~~~v~~v~~~~~~~~l~ 89 (340)
.+...|+|++|++-. . .||+|- .|..+.|||+.++ . ....+..+.......++|..+.+.+.
T Consensus 100 ~~ar~Ct~lAwneLDtn---------~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvl 170 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTN---------HLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVL 170 (783)
T ss_pred cccccccccccccccHH---------HHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhh
Confidence 466889999999875 4 677774 4578999999876 1 22223222334567899998889999
Q ss_pred EEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEcc-CCCEEEE-ecCcEEEEE-CCCCce-eEEeecCC----CCeEEE
Q 036605 90 VVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLC-EEKIFAL-ASSEVRILS-LENGEE-VLKFSDDV----GPLQYV 161 (340)
Q Consensus 90 s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~-~~~~i~i~d-~~~~~~-~~~~~~~~----~~v~~~ 161 (340)
+|.....+.++|++.... .........+..+.+.| .+.++++ .++.|-+|| ...-+. +..+...+ ..+..+
T Consensus 171 aGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ 249 (783)
T KOG1008|consen 171 AGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFAL 249 (783)
T ss_pred cccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeE
Confidence 998889999999873321 11112234567788888 6777766 566699999 333222 22222222 248889
Q ss_pred EECCCCCE-EEEEEcCCCeEEEEEcc
Q 036605 162 SASDGAKI-IITAGYGEKHLQVWRCD 186 (340)
Q Consensus 162 ~~s~~~~~-l~s~~~~d~~i~iwd~~ 186 (340)
+|.|...- +++.....++|+.+|+.
T Consensus 250 aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 250 AYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred EeccCCcchhhhhccCcceEEEeccc
Confidence 99886543 34444446899999985
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0056 Score=53.42 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=54.5
Q ss_pred CCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC----------------
Q 036605 51 NGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKAS---------------- 114 (340)
Q Consensus 51 dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---------------- 114 (340)
.+.+.+||+++++.. .+.. ....+....|+|+|+.++... ++.|.+++..++...+.-...
T Consensus 22 ~~~y~i~d~~~~~~~-~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDIETGEIT-PLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEETTTTEEE-ESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEecCCCceE-ECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 467999999998644 4443 356889999999999988865 568999998887544322111
Q ss_pred -CCCeeEEEEccCCCEEEE
Q 036605 115 -EKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 115 -~~~i~~l~~~~~~~~l~~ 132 (340)
-..-..+.||||+++|+.
T Consensus 99 v~~~~~~~~WSpd~~~la~ 117 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAF 117 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEE
T ss_pred ccccccceEECCCCCEEEE
Confidence 112357889999998875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.008 Score=48.91 Aligned_cols=143 Identities=12% Similarity=0.142 Sum_probs=93.4
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCc-EEEEEccCCeeEEEecCCCCCC--eEEEEEecCCCEEEEEeCC----
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGD-ILAVDVLTGEMKWKSTGRHPGG--LAGLAFAKKGRSLHVVGTN---- 94 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~~~h~~~--v~~v~~~~~~~~l~s~~~d---- 94 (340)
.....++|+|.-. .-++.+-.-|+ ..++|....+....+.. .++. --.=.|||||.+||..-.|
T Consensus 68 aR~Hgi~~~p~~~--------ravafARrPGtf~~vfD~~~~~~pv~~~s-~~~RHfyGHGvfs~dG~~LYATEndfd~~ 138 (366)
T COG3490 68 ARGHGIAFHPALP--------RAVAFARRPGTFAMVFDPNGAQEPVTLVS-QEGRHFYGHGVFSPDGRLLYATENDFDPN 138 (366)
T ss_pred cccCCeecCCCCc--------ceEEEEecCCceEEEECCCCCcCcEEEec-ccCceeecccccCCCCcEEEeecCCCCCC
Confidence 4556788888763 04666655555 46788877765544432 1111 1123689999999987554
Q ss_pred -CcEEEEeCCCC-eEEEEeecCCCCeeEEEEccCCCEEEEecCc--------------------EEEEECCCCceeEEe-
Q 036605 95 -GMASEMKSEMG-EVIREFKASEKPISSSAFLCEEKIFALASSE--------------------VRILSLENGEEVLKF- 151 (340)
Q Consensus 95 -g~i~~wd~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--------------------i~i~d~~~~~~~~~~- 151 (340)
|.|-+||.+.+ +.+.+|..|.-....+.+.+||+.++.+++- +.+.|..+|..+.+.
T Consensus 139 rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~ 218 (366)
T COG3490 139 RGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT 218 (366)
T ss_pred CceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhcc
Confidence 78999998754 3455677787788999999999999987764 334454555544332
Q ss_pred -e--cCCCCeEEEEECCCCCEEEEE
Q 036605 152 -S--DDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 152 -~--~~~~~v~~~~~s~~~~~l~s~ 173 (340)
. .+.-.+..+...+||...+.+
T Consensus 219 Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 219 LPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred CchhhhhcceeeeeeCCCCcEEEEE
Confidence 2 344568888888888655543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00017 Score=39.43 Aligned_cols=39 Identities=31% Similarity=0.325 Sum_probs=32.9
Q ss_pred CceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEE
Q 036605 7 GSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVD 58 (340)
Q Consensus 7 g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d 58 (340)
++....+. .|...|.++.|++.+. ++++++.|+.+++|+
T Consensus 2 ~~~~~~~~----~~~~~i~~~~~~~~~~---------~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLK----GHTGPVTSVAFSPDGK---------YLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEE----ecCCceeEEEECCCCC---------EEEEecCCCeEEEcC
Confidence 34555666 6788999999999888 899999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.041 Score=48.57 Aligned_cols=202 Identities=12% Similarity=0.129 Sum_probs=126.9
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEe
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNGMASEMK 101 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~~wd 101 (340)
....+...|++. ...++-.....+...+............ -...-..++.++.+..++... .+..|.+.|
T Consensus 32 ~~~~v~~~~~g~--------~~~v~~~~~~~~~~~~~~~n~~~~~~~~-g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid 102 (381)
T COG3391 32 GPGGVAVNPDGT--------QVYVANSGSNDVSVIDATSNTVTQSLSV-GGVYPAGVAVNPAGNKVYVTTGDSNTVSVID 102 (381)
T ss_pred CCceeEEcCccC--------EEEEEeecCceeeecccccceeeeeccC-CCccccceeeCCCCCeEEEecCCCCeEEEEc
Confidence 344556667773 0344433333566666552222221221 113346778888888666655 458999999
Q ss_pred CCCCeEEEEeecCCCCeeEEEEccCCCEEEEec-----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 102 SEMGEVIREFKASEKPISSSAFLCEEKIFALAS-----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 102 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
..+........... ....++++|+++.+.+++ ..+.+.|..+++.+.....-..+ ..++++|+|..++.+...
T Consensus 103 ~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 103 TATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred CcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecC
Confidence 88777766655444 567899999998886633 33899999888887775433344 889999999988888866
Q ss_pred CCeEEEEEccCCCCCccC-Cc--eeeecCCCeeeeeecCCCCCCCCEEEEEeCC---CcEEEEECCCCCccC
Q 036605 177 EKHLQVWRCDISSKTVNK-GP--ALSMRHSPVAIDCKNSPNGEDGTVILAVAES---GVAYSWDLKTVSQDE 242 (340)
Q Consensus 177 d~~i~iwd~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d---g~i~vwd~~~~~~~~ 242 (340)
++.|.+.|.. ...... .. .......+....+ .+++.++...... +.+...|..+.....
T Consensus 181 ~~~v~vi~~~--~~~v~~~~~~~~~~~~~~P~~i~v-----~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 181 DNTVSVIDTS--GNSVVRGSVGSLVGVGTGPAGIAV-----DPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred CCeEEEEeCC--CcceeccccccccccCCCCceEEE-----CCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 9999999973 322221 10 1222344455555 7888866555443 578888887754443
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0027 Score=55.76 Aligned_cols=155 Identities=15% Similarity=0.225 Sum_probs=86.5
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEe-------cCCCCCCeEEEEEec-----CC--
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKS-------TGRHPGGLAGLAFAK-----KG-- 85 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-------~~~h~~~v~~v~~~~-----~~-- 85 (340)
..++|++++.|.-| ++|+|..+|.+.|.|++....++.- .......|+++.|.- |+
T Consensus 85 ~~g~vtal~~S~iG----------Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 85 KQGPVTALKNSDIG----------FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp -S-SEEEEEE-BTS----------EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred cCCcEeEEecCCCc----------EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 36899999998444 5999999999999999888766652 112345688888863 22
Q ss_pred -CEEEEEeCCCcEEEEeCCC---CeEEEE----eecCCCCeeEEE-Ecc----------------------CCCEEEEec
Q 036605 86 -RSLHVVGTNGMASEMKSEM---GEVIRE----FKASEKPISSSA-FLC----------------------EEKIFALAS 134 (340)
Q Consensus 86 -~~l~s~~~dg~i~~wd~~~---~~~~~~----~~~~~~~i~~l~-~~~----------------------~~~~l~~~~ 134 (340)
-.|++|...|.+.+|.+.. +..... ...+.+++..|. ++. .+-.++++.
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 3688888889999997641 221111 123445554443 221 122344466
Q ss_pred CcEEEEECCCCceeEEeecCCCCeEEEEEC-----CCCCEEEEEEcCCCeEEEEEc
Q 036605 135 SEVRILSLENGEEVLKFSDDVGPLQYVSAS-----DGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 135 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s~~~~d~~i~iwd~ 185 (340)
.+++++.+.+.+...+.......+..+.+- ..+..|++ -..+|.+++|.+
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~-l~~~G~i~i~SL 289 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVC-LFNNGSIRIYSL 289 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEE-EETTSEEEEEET
T ss_pred cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEE-EECCCcEEEEEC
Confidence 669999998877665544332333444452 23444444 445999999999
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0095 Score=51.28 Aligned_cols=222 Identities=17% Similarity=0.154 Sum_probs=104.1
Q ss_pred cCCCCceeeeeeCCCC-CCCCCeEEEEeeccccccccccCceEEEEEcCCC--cEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 3 STNDGSLLAEWKQPDG-EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNG--DILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 3 d~~~g~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
|..+|..+-.+++... .|.--.+.=+|.++|+ .+|+.+..+| .+++.|+.+++..+-..+ -.......
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~--------kllF~s~~dg~~nly~lDL~t~~i~QLTdg-~g~~~~g~ 86 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGR--------KLLFASDFDGNRNLYLLDLATGEITQLTDG-PGDNTFGG 86 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS---------EEEEEE-TTSS-EEEEEETTT-EEEE---S-S-B-TTT-
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCC--------EEEEEeccCCCcceEEEEcccCEEEECccC-CCCCccce
Confidence 5677777766664311 0111112234677784 1666666565 567778999875543332 11223356
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEE--ccCCCEEEEe-----cC-----------------
Q 036605 80 AFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAF--LCEEKIFALA-----SS----------------- 135 (340)
Q Consensus 80 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~--~~~~~~l~~~-----~~----------------- 135 (340)
.++|+++.++.......|...|+.+.+....+.....-+-...| +.++..++.. +.
T Consensus 87 ~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p 166 (386)
T PF14583_consen 87 FLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP 166 (386)
T ss_dssp EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred EEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence 77888888877766778999999998876666655554433444 4456665431 10
Q ss_pred --cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc-C--CC-eEEEEEccCCCCCccCCceeeecCCCeeeee
Q 036605 136 --EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY-G--EK-HLQVWRCDISSKTVNKGPALSMRHSPVAIDC 209 (340)
Q Consensus 136 --~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-~--d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (340)
.|.-.|+.+|+....+. -...+..+.|+|....+++-+- + +. .-+||-++...... ..+. .+.+... +
T Consensus 167 ~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~v~---~~~~~e~-~ 240 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KKVH---RRMEGES-V 240 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS------TTEE-E
T ss_pred CceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-eeee---cCCCCcc-c
Confidence 16667888886544443 4567889999998766665433 2 22 13677775333222 2121 1222111 1
Q ss_pred ecCCCCCCCCEEEEEeC-----CCcEEEEECCCCC
Q 036605 210 KNSPNGEDGTVILAVAE-----SGVAYSWDLKTVS 239 (340)
Q Consensus 210 ~~~~~~~~~~~l~~~s~-----dg~i~vwd~~~~~ 239 (340)
..-|+.+||..+.-.+. +..|.-+|+.+++
T Consensus 241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 11223788877654332 3346666777654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0013 Score=58.60 Aligned_cols=142 Identities=13% Similarity=0.199 Sum_probs=81.2
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASE 99 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~ 99 (340)
.......+.++|+|+ ++++ +.+|...||.....+.... +.-...+|.+ .+.+++-.....|.+
T Consensus 31 ~~~~p~~ls~npngr---------~v~V-~g~geY~iyt~~~~r~k~~------G~g~~~vw~~-~n~yAv~~~~~~I~I 93 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGR---------FVLV-CGDGEYEIYTALAWRNKAF------GSGLSFVWSS-RNRYAVLESSSTIKI 93 (443)
T ss_dssp -SS--SEEEE-TTSS---------EEEE-EETTEEEEEETTTTEEEEE------EE-SEEEE-T-SSEEEEE-TTS-EEE
T ss_pred CCcCCeeEEECCCCC---------EEEE-EcCCEEEEEEccCCccccc------CceeEEEEec-CccEEEEECCCeEEE
Confidence 344567899999999 7777 6788888988544443321 2345778988 445666677888988
Q ss_pred EeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc-EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCC
Q 036605 100 MKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE-VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEK 178 (340)
Q Consensus 100 wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~-i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~ 178 (340)
+.--..+....+... ..+..|- + |..|+..+.. |.+||+.+++.++++... +|..+.|++++.+++..+ +.
T Consensus 94 ~kn~~~~~~k~i~~~-~~~~~If--~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--~~ 165 (443)
T PF04053_consen 94 YKNFKNEVVKSIKLP-FSVEKIF--G-GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--KD 165 (443)
T ss_dssp EETTEE-TT-----S-S-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE---S-
T ss_pred EEcCccccceEEcCC-cccceEE--c-CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe--CC
Confidence 632222221223221 1233332 2 7777775555 999999999999888643 489999999999988865 46
Q ss_pred eEEEEEcc
Q 036605 179 HLQVWRCD 186 (340)
Q Consensus 179 ~i~iwd~~ 186 (340)
.+.|++.+
T Consensus 166 ~i~il~~~ 173 (443)
T PF04053_consen 166 SIYILKYN 173 (443)
T ss_dssp SEEEEEE-
T ss_pred eEEEEEec
Confidence 77787763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.035 Score=51.09 Aligned_cols=190 Identities=15% Similarity=0.173 Sum_probs=108.6
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeE----------EEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeec
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLA----------GLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKA 113 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~----------~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 113 (340)
.+++++.++.|+-+|..+|+.++++...-...+. .+++. +..++.++.|+.+.-+|..+|+.+.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 5777888899999999999999987641111111 12222 45678888999999999999999877543
Q ss_pred CCC----CeeE-EEEccCCCEEEEe-------cCcEEEEECCCCceeEEeecCCC-------------------------
Q 036605 114 SEK----PISS-SAFLCEEKIFALA-------SSEVRILSLENGEEVLKFSDDVG------------------------- 156 (340)
Q Consensus 114 ~~~----~i~~-l~~~~~~~~l~~~-------~~~i~i~d~~~~~~~~~~~~~~~------------------------- 156 (340)
... .+.+ ..+ -++..++.. ++.|..+|.++|+.+-++..-..
T Consensus 149 ~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~ 227 (527)
T TIGR03075 149 GDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA 227 (527)
T ss_pred ccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence 211 1111 111 134444332 24599999999987755421110
Q ss_pred ------Ce-EEEEECCCCCEEEEEEcC-----------CC--eEEEEEccCCCCCccCCce--------eeecCCCeeee
Q 036605 157 ------PL-QYVSASDGAKIIITAGYG-----------EK--HLQVWRCDISSKTVNKGPA--------LSMRHSPVAID 208 (340)
Q Consensus 157 ------~v-~~~~~s~~~~~l~s~~~~-----------d~--~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~ 208 (340)
.+ ..+.+.+....++.+..+ |+ .-.|.-++..+++..-.+. +.....+..++
T Consensus 228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d 307 (527)
T TIGR03075 228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFD 307 (527)
T ss_pred cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEE
Confidence 11 123556655555554321 11 1122222224544322211 11112233333
Q ss_pred eecCCCCCCCC---EEEEEeCCCcEEEEECCCCCcc
Q 036605 209 CKNSPNGEDGT---VILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 209 ~~~~~~~~~~~---~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
+ ..+|. .++.++.+|.+++.|-.+++.+
T Consensus 308 ~-----~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 308 L-----KKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred e-----ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 3 34555 7889999999999999998875
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.014 Score=40.68 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=59.0
Q ss_pred eEEEEeec---cccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 036605 24 YSCLACGF---VGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEM 100 (340)
Q Consensus 24 v~~l~~sp---~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~w 100 (340)
|++|++.. +|. .-|++|+.|..|++|+ ..+.+..+. ..+.|++++-... ..++.+-.+|+|-+|
T Consensus 2 V~al~~~d~d~dg~--------~eLlvGs~D~~IRvf~--~~e~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGE--------NELLVGSDDFEIRVFK--GDEIVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCc--------ceEEEecCCcEEEEEe--CCcEEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEE
Confidence 56777754 331 2799999999999998 446777777 4567888887754 678888999999999
Q ss_pred eCCCCeEEEEeecCCCCeeEEEEc
Q 036605 101 KSEMGEVIREFKASEKPISSSAFL 124 (340)
Q Consensus 101 d~~~~~~~~~~~~~~~~i~~l~~~ 124 (340)
+- ...+...+.... +.++++.
T Consensus 69 ~~--~~RlWRiKSK~~-~~~~~~~ 89 (111)
T PF14783_consen 69 DR--SQRLWRIKSKNQ-VTSMAFY 89 (111)
T ss_pred eC--cceeeeeccCCC-eEEEEEE
Confidence 75 334455554333 4555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.011 Score=52.71 Aligned_cols=182 Identities=14% Similarity=0.107 Sum_probs=90.4
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKS 102 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~ 102 (340)
.....+|++.++ +|+-..+++|.|+.--+.+....+.. +..+..+-. |..|...+.+ .|.+||+
T Consensus 70 ~g~~~vw~~~n~----------yAv~~~~~~I~I~kn~~~~~~k~i~~--~~~~~~If~---G~LL~~~~~~-~i~~yDw 133 (443)
T PF04053_consen 70 SGLSFVWSSRNR----------YAVLESSSTIKIYKNFKNEVVKSIKL--PFSVEKIFG---GNLLGVKSSD-FICFYDW 133 (443)
T ss_dssp E-SEEEE-TSSE----------EEEE-TTS-EEEEETTEE-TT-------SS-EEEEE----SSSEEEEETT-EEEEE-T
T ss_pred ceeEEEEecCcc----------EEEEECCCeEEEEEcCccccceEEcC--CcccceEEc---CcEEEEECCC-CEEEEEh
Confidence 345567777555 66666678888864222222223332 223444432 7777776555 8999999
Q ss_pred CCCeEEEEeecCCCCeeEEEEccCCCEEEEecC-cEEEEECCCC-----------ceeEEeecCCCCeEEEEECCCCCEE
Q 036605 103 EMGEVIREFKASEKPISSSAFLCEEKIFALASS-EVRILSLENG-----------EEVLKFSDDVGPLQYVSASDGAKII 170 (340)
Q Consensus 103 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-~i~i~d~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l 170 (340)
.+++.+..+... +|..+.|++++.+++..+. .+.+++.... ..+..+......|.+..|..+ -++
T Consensus 134 ~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fi 210 (443)
T PF04053_consen 134 ETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFI 210 (443)
T ss_dssp TT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEE
T ss_pred hHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEE
Confidence 999999988743 4889999999999977544 4777664322 022333322567888999777 344
Q ss_pred EEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 171 ITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 171 ~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
++ .. +.++.+- .++.. ....+..+...... .+....++....|+.+..+.+..
T Consensus 211 Yt-T~--~~lkYl~----~Ge~~--~i~~ld~~~yllgy-----~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 211 YT-TS--NHLKYLV----NGETG--IIAHLDKPLYLLGY-----LPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EE--T--TEEEEEE----TTEEE--EEEE-SS--EEEEE-----ETTTTEEEEE-TT--EEEEE--H
T ss_pred EE-cC--CeEEEEE----cCCcc--eEEEcCCceEEEEE-----EccCCEEEEEECCCCEEEEEECH
Confidence 44 44 3666632 22211 11112333333333 34456777788888888887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00033 Score=40.65 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=31.4
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK 65 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~ 65 (340)
.....|.+++|+|... +||.|+.+|.|.+|.+ +++.+
T Consensus 9 ~l~~~v~~~~w~P~md---------LiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMD---------LIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCCcEEEEEECCCCC---------EEEEEECCCeEEEEEC-CCcCc
Confidence 3456899999999999 9999999999999998 55433
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.049 Score=48.47 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=77.9
Q ss_pred CCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC------CCCCCeEEE
Q 036605 6 DGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG------RHPGGLAGL 79 (340)
Q Consensus 6 ~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~------~h~~~v~~v 79 (340)
+|.++..+.-. .+.+.++.|+.+.. |++-..||.+++||+. |+....+.. .....+...
T Consensus 69 sG~ll~~i~w~----~~~iv~~~wt~~e~----------LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~ 133 (410)
T PF04841_consen 69 SGKLLSSIPWD----SGRIVGMGWTDDEE----------LVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAI 133 (410)
T ss_pred CCCEeEEEEEC----CCCEEEEEECCCCe----------EEEEEcCCEEEEEeCC-CceeechhhhccccCccccccccc
Confidence 46666555422 27899999998767 6677799999999986 333111110 011222222
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCeEE-EEeecCCCCeeE----------EEEccCCCEEEE--ecCcEEEEECCCCc
Q 036605 80 AFAKKGRSLHVVGTNGMASEMKSEMGEVI-REFKASEKPISS----------SAFLCEEKIFAL--ASSEVRILSLENGE 146 (340)
Q Consensus 80 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~i~~----------l~~~~~~~~l~~--~~~~i~i~d~~~~~ 146 (340)
.+..+|-.++ ..++.+.+.+-...... ..+..-...... ..++.+....+. .+..+.+.+-...+
T Consensus 134 ~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 134 WFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred ccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence 3332342223 34444544432221111 111100000000 112222222111 22223333222111
Q ss_pred eeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 147 EVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 147 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
. + ...+++..|++||++++++.-.. +|.+.|...+
T Consensus 212 ~---i-~~~~~i~~iavSpng~~iAl~t~-~g~l~v~ssD 246 (410)
T PF04841_consen 212 Q---I-DSDGPIIKIAVSPNGKFIALFTD-SGNLWVVSSD 246 (410)
T ss_pred c---c-cCCCCeEEEEECCCCCEEEEEEC-CCCEEEEECc
Confidence 1 1 12368999999999999988766 8998888763
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.039 Score=51.26 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=33.4
Q ss_pred EEEEEcCC------CcEEEEEccCCeeEEEecCCCCCCe-EEEEEecCCCEEEEEeCCC-----cEEEEeCCCCe
Q 036605 44 LLALGTSN------GDILAVDVLTGEMKWKSTGRHPGGL-AGLAFAKKGRSLHVVGTNG-----MASEMKSEMGE 106 (340)
Q Consensus 44 ~l~~g~~d------g~i~i~d~~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~dg-----~i~~wd~~~~~ 106 (340)
++++|+.+ ..+..||..+.... .+..-....- .+++ .-+|+..+.||.++ .+..||+.+.+
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 67777753 34778998877532 2221011111 1222 22566667777653 47889987654
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.12 Score=45.21 Aligned_cols=191 Identities=10% Similarity=0.036 Sum_probs=90.9
Q ss_pred EEEE-EcCCCcEEEEEccC----CeeEEEecC--CCC----CCeEEEEEecCCCEEEEE--eCC----CcEEEEeCCCCe
Q 036605 44 LLAL-GTSNGDILAVDVLT----GEMKWKSTG--RHP----GGLAGLAFAKKGRSLHVV--GTN----GMASEMKSEMGE 106 (340)
Q Consensus 44 ~l~~-g~~dg~i~i~d~~~----~~~~~~~~~--~h~----~~v~~v~~~~~~~~l~s~--~~d----g~i~~wd~~~~~ 106 (340)
+|++ |-..+.|+|+|+.+ .++.+.+.. .+. ..-..+..-|+|+.++++ +.+ |-+.++|-++.+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 5555 44889999999873 334444432 010 112233335688888875 222 678899999888
Q ss_pred EEEEeecCCC---CeeEEEEccCCCEEEEec----------------------CcEEEEECCCCceeEEeecCC--CCeE
Q 036605 107 VIREFKASEK---PISSSAFLCEEKIFALAS----------------------SEVRILSLENGEEVLKFSDDV--GPLQ 159 (340)
Q Consensus 107 ~~~~~~~~~~---~i~~l~~~~~~~~l~~~~----------------------~~i~i~d~~~~~~~~~~~~~~--~~v~ 159 (340)
.+..+..... --+.+.+.|..+.+++.. +.+.+||+.+.+.++.+.--. ....
T Consensus 169 v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pL 248 (461)
T PF05694_consen 169 VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPL 248 (461)
T ss_dssp EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEE
T ss_pred ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceE
Confidence 8888765433 346778888888887722 239999999999998885433 2355
Q ss_pred EEEE--CCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeec------------------CCCeeeeeecCCCCCCCC
Q 036605 160 YVSA--SDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMR------------------HSPVAIDCKNSPNGEDGT 219 (340)
Q Consensus 160 ~~~~--s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 219 (340)
.+.| .|+..+-++++.-...|..|--. ..++....-...+. -++.+.++ .. +.|.+
T Consensus 249 EvRflH~P~~~~gFvg~aLss~i~~~~k~-~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI--~i-SlDDr 324 (461)
T PF05694_consen 249 EVRFLHDPDANYGFVGCALSSSIWRFYKD-DDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI--LI-SLDDR 324 (461)
T ss_dssp EEEE-SSTT--EEEEEEE--EEEEEEEE--ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E--EE--TTS-
T ss_pred EEEecCCCCccceEEEEeccceEEEEEEc-CCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE--EE-ccCCC
Confidence 6777 44455544433325555544321 12211111111111 02334443 22 66777
Q ss_pred EEEEEe-CCCcEEEEECCCC
Q 036605 220 VILAVA-ESGVAYSWDLKTV 238 (340)
Q Consensus 220 ~l~~~s-~dg~i~vwd~~~~ 238 (340)
+|...+ .+|.|+.||+...
T Consensus 325 fLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEEETTTTEEEEEE-SST
T ss_pred EEEEEcccCCcEEEEecCCC
Confidence 776655 5899999999763
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.016 Score=51.22 Aligned_cols=142 Identities=11% Similarity=0.071 Sum_probs=99.1
Q ss_pred ceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCC--E-----EEEEeCCCcEEEEeCCCCeE--EEEee
Q 036605 42 TLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGR--S-----LHVVGTNGMASEMKSEMGEV--IREFK 112 (340)
Q Consensus 42 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~-----l~s~~~dg~i~~wd~~~~~~--~~~~~ 112 (340)
..+|..+.....++-.|++.|+.+..+.- |.. |+-+.+.|+.+ . -+.|-.|..|.-||++-... +....
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~-~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKF-EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeec-cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 34555666777899999999999888875 554 78888887653 2 24466778999999874322 11111
Q ss_pred c----CCCCeeEEEEccCCCEEEE-ecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccC
Q 036605 113 A----SEKPISSSAFLCEEKIFAL-ASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDI 187 (340)
Q Consensus 113 ~----~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~ 187 (340)
+ ......|.+-..+|.+++. -+++|++||--....-..+++-..+|..+..+.+|++|++++ +.++.+.++..
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~~ 501 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTLI 501 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEec
Confidence 1 2334678888888866543 566799999633333345677889999999999999999854 57888887743
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.06 Score=45.14 Aligned_cols=148 Identities=16% Similarity=0.189 Sum_probs=85.7
Q ss_pred cCCCEEEEEeCCCcEEEEeCC-CCeEEEEeecCCCCeeEEEEccCCCEEEE-ecCcEEEEECCCCceeEEe---------
Q 036605 83 KKGRSLHVVGTNGMASEMKSE-MGEVIREFKASEKPISSSAFLCEEKIFAL-ASSEVRILSLENGEEVLKF--------- 151 (340)
Q Consensus 83 ~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~~~~~~~~~~--------- 151 (340)
..++.|+.|..+| +.+++.. ........ +...|..+.+.|+-+.+++ +++.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccc
Confidence 3578899998888 8999883 23322222 2334999999998776655 7788999998764433210
Q ss_pred -----ecCCCCeEEEE--ECCCCCEEEEEEcCCCeEEEEEccCCCCCc-cCCceeeecCCCeeeeeecCCCCCCCCEEEE
Q 036605 152 -----SDDVGPLQYVS--ASDGAKIIITAGYGEKHLQVWRCDISSKTV-NKGPALSMRHSPVAIDCKNSPNGEDGTVILA 223 (340)
Q Consensus 152 -----~~~~~~v~~~~--~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 223 (340)
......+...+ -...+...+..+. .+.|.+|.+....... .....+.+...+..+.+ . +..++.
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~-----~--~~~i~v 153 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAF-----L--GNKICV 153 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEE-----e--CCEEEE
Confidence 11122344444 1233334444455 6799999985321221 12223333444444444 2 456777
Q ss_pred EeCCCcEEEEECCCCCccC
Q 036605 224 VAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 224 ~s~dg~i~vwd~~~~~~~~ 242 (340)
|..++ ..+.|+.++...+
T Consensus 154 ~~~~~-f~~idl~~~~~~~ 171 (275)
T PF00780_consen 154 GTSKG-FYLIDLNTGSPSE 171 (275)
T ss_pred EeCCc-eEEEecCCCCceE
Confidence 77666 8889988654443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.15 Score=45.47 Aligned_cols=168 Identities=13% Similarity=0.090 Sum_probs=89.3
Q ss_pred cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEe-------ecCCCCeeEEEEcc
Q 036605 53 DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREF-------KASEKPISSSAFLC 125 (340)
Q Consensus 53 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-------~~~~~~i~~l~~~~ 125 (340)
.|.||+.. |+.+.++.- -.+.|.++.|+.+ ..|+....||.++++|+. |+....+ ......+....+..
T Consensus 62 ~I~iys~s-G~ll~~i~w-~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPW-DSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEE-CCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCC
Confidence 48899854 556666655 2389999999874 456667899999999986 3331111 11111222334444
Q ss_pred CCCEEEEecCcEEEEECCCCc-eeEEe---ec-------CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccC
Q 036605 126 EEKIFALASSEVRILSLENGE-EVLKF---SD-------DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNK 194 (340)
Q Consensus 126 ~~~~l~~~~~~i~i~d~~~~~-~~~~~---~~-------~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~ 194 (340)
+|-.+++.++.+.+..--... ..+.+ .. +.....-..++.+....+.... ++.+.+.+-. ....
T Consensus 138 ~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~-g~~i~~i~~~--~~~~-- 212 (410)
T PF04841_consen 138 NGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLAN-GETIYIIDEN--SFKQ-- 212 (410)
T ss_pred CCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEec-CCEEEEEEcc--cccc--
Confidence 665556666665444322211 11111 10 1111011234555555555455 5666644421 1111
Q ss_pred CceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 195 GPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.. ...+-..+.+ +|++.+++.-..+|.+.+.+..-
T Consensus 213 -i~--~~~~i~~iav-----Spng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 213 -ID--SDGPIIKIAV-----SPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred -cc--CCCCeEEEEE-----CCCCCEEEEEECCCCEEEEECcc
Confidence 10 0112223334 89999999999999998886543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0036 Score=56.16 Aligned_cols=92 Identities=11% Similarity=0.133 Sum_probs=74.5
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCee-EEEEccCCCEEEE--ecCcEEEEECCCCceeE
Q 036605 73 PGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPIS-SSAFLCEEKIFAL--ASSEVRILSLENGEEVL 149 (340)
Q Consensus 73 ~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~--~~~~i~i~d~~~~~~~~ 149 (340)
...|.-+.|+|.-..+|.+..+|.|.+.-+. .+.+..+..+...++ +++|.|||+.+++ .+|+|++.|.+++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467889999999999999999999988877 667777776666666 9999999999988 57779999999998776
Q ss_pred Ee-ecCCCCeEEEEECC
Q 036605 150 KF-SDDVGPLQYVSASD 165 (340)
Q Consensus 150 ~~-~~~~~~v~~~~~s~ 165 (340)
.+ -....+|.++.|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 63 22346778888863
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.049 Score=37.99 Aligned_cols=99 Identities=12% Similarity=0.151 Sum_probs=61.0
Q ss_pred eEEEEEec---CC-CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ecCcEEEEECCCCceeEE
Q 036605 76 LAGLAFAK---KG-RSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-ASSEVRILSLENGEEVLK 150 (340)
Q Consensus 76 v~~v~~~~---~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~~~~~~~~~ 150 (340)
|+++++.. +| +.|+.|+.|..|++|+- .+.+.++.. ...+.++.-...+++.+. ..++|-+|+-.. .+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeee
Confidence 56666654 33 47999999999999974 356666664 456778877777766644 778888887532 2333
Q ss_pred eecCCCCeEEEEE-C--CCCC-EEEEEEcCCCeEE
Q 036605 151 FSDDVGPLQYVSA-S--DGAK-IIITAGYGEKHLQ 181 (340)
Q Consensus 151 ~~~~~~~v~~~~~-s--~~~~-~l~s~~~~d~~i~ 181 (340)
.+... .+.++.+ . .||. -|+++-. +|.|-
T Consensus 77 iKSK~-~~~~~~~~D~~gdG~~eLI~Gws-nGkve 109 (111)
T PF14783_consen 77 IKSKN-QVTSMAFYDINGDGVPELIVGWS-NGKVE 109 (111)
T ss_pred eccCC-CeEEEEEEcCCCCCceEEEEEec-CCeEE
Confidence 33222 3455544 2 2333 3555444 77764
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0024 Score=60.67 Aligned_cols=98 Identities=15% Similarity=0.243 Sum_probs=72.7
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecC-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEE-
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTG-RHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSS- 121 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l- 121 (340)
.++.|++.|.+...|.... .-+-..+ .-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+..+...+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 6888999999998887653 2211111 256799999999999999999999999999999999998888777665544
Q ss_pred --EEccCCCEEEEecCcEEEEEC
Q 036605 122 --AFLCEEKIFALASSEVRILSL 142 (340)
Q Consensus 122 --~~~~~~~~l~~~~~~i~i~d~ 142 (340)
.+..++..+++++..=.+|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gsf~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGSFWKL 202 (1206)
T ss_pred EEEEeCCCcEEEEccCCCceEEE
Confidence 344555566776655446654
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.21 Score=44.14 Aligned_cols=200 Identities=13% Similarity=0.135 Sum_probs=104.8
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE-------------------------------------
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK------------------------------------- 65 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~------------------------------------- 65 (340)
.|+.+.|+++.. -|++|...|.|.+|.....+..
T Consensus 3 ~v~~vs~a~~t~---------Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~ 73 (395)
T PF08596_consen 3 SVTHVSFAPETL---------ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLK 73 (395)
T ss_dssp -EEEEEEETTTT---------EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-S
T ss_pred eEEEEEecCCCc---------eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccc
Confidence 688999998875 5999999999999865322111
Q ss_pred ------EEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEe--ec------CCCCeeEEEEc-----cC
Q 036605 66 ------WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREF--KA------SEKPISSSAFL-----CE 126 (340)
Q Consensus 66 ------~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~--~~------~~~~i~~l~~~-----~~ 126 (340)
.-+.. ..++|++++.+ |-.+++.|..+|.+.+.|++....+..- .. ....++++.|. .|
T Consensus 74 ~gf~P~~l~~~-~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 74 EGFLPLTLLDA-KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp EEEEEEEEE----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTS
T ss_pred cccCchhheec-cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCC
Confidence 01112 45789999987 5669999999999999999887776652 22 22356777776 23
Q ss_pred C---CEEEE--ecCcEEEEECC--C-CceeEEe----ecCCCCeEEEE-ECCC---------------------CCEEEE
Q 036605 127 E---KIFAL--ASSEVRILSLE--N-GEEVLKF----SDDVGPLQYVS-ASDG---------------------AKIIIT 172 (340)
Q Consensus 127 ~---~~l~~--~~~~i~i~d~~--~-~~~~~~~----~~~~~~v~~~~-~s~~---------------------~~~l~s 172 (340)
+ ..+++ ..+.+.+|.+- . +.-...+ ..+.+++..+. |+.+ ..+++.
T Consensus 152 ~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv 231 (395)
T PF08596_consen 152 GYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV 231 (395)
T ss_dssp SSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE
T ss_pred cccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE
Confidence 3 23333 33446666553 1 2111111 24556666555 3211 124444
Q ss_pred EEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCC----CCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 173 AGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPN----GEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 173 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.. +..++|+... +.+.... ....+ ..... +.+. ...+..|++-..+|.|++|.+...+++.
T Consensus 232 -vS-e~~irv~~~~--~~k~~~K---~~~~~-~~~~~-~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 232 -VS-ESDIRVFKPP--KSKGAHK---SFDDP-FLCSS-ASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp -E--SSEEEEE-TT-----EEEE---E-SS--EEEEE-EEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEE
T ss_pred -Ec-ccceEEEeCC--CCcccce---eeccc-cccce-EEEEeecccCCceEEEEEECCCcEEEEECCCchHhh
Confidence 44 6899999873 3221111 11111 11111 0110 2356778999999999999998766554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.054 Score=50.41 Aligned_cols=102 Identities=9% Similarity=0.076 Sum_probs=63.5
Q ss_pred CCeEEEEEecCCCEEEEEe------CCC--cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEe-cCc--------
Q 036605 74 GGLAGLAFAKKGRSLHVVG------TNG--MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALA-SSE-------- 136 (340)
Q Consensus 74 ~~v~~v~~~~~~~~l~s~~------~dg--~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~~-------- 136 (340)
..+...+++|+|+.++... .|. .|.+++. .+.. ..+.... ..+.-.|+|+|..+.+. ++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCC-CCCCceECCCCCceEEEecCcceEEEecc
Confidence 3678899999999877655 243 4555554 2332 3333222 37888999998866553 331
Q ss_pred -----EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEE
Q 036605 137 -----VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVW 183 (340)
Q Consensus 137 -----i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iw 183 (340)
+++.++..++... .....|..+.|||||..++... ++.|.+=
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va 473 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLA 473 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEE
Confidence 3333443332211 2345799999999999998855 4677763
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.019 Score=50.74 Aligned_cols=132 Identities=11% Similarity=0.068 Sum_probs=85.3
Q ss_pred cCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee-EEEecCCCC----CCeE
Q 036605 3 STNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM-KWKSTGRHP----GGLA 77 (340)
Q Consensus 3 d~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~h~----~~v~ 77 (340)
|.++|+++.+|+ -+ ..|+.+.+.|+.+-.+.- ...-++|-.+..|.-||.+-... .......|. ....
T Consensus 362 DIE~GKIVeEWk----~~-~di~mv~~t~d~K~~Ql~--~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs 434 (644)
T KOG2395|consen 362 DIERGKIVEEWK----FE-DDINMVDITPDFKFAQLT--SEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS 434 (644)
T ss_pred ecccceeeeEee----cc-CCcceeeccCCcchhccc--ccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence 678999999998 23 338888899887511111 11234677788899999763321 111111121 2334
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ecCcEEEEEC
Q 036605 78 GLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-ASSEVRILSL 142 (340)
Q Consensus 78 ~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~ 142 (340)
|.+-. ...+++.||.+|.|++||--..+...-+.+-..+|..|..+.+|++++. +...+.+.++
T Consensus 435 c~aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 435 CFATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred eeeec-CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 44433 3448899999999999997333333447777889999999999999865 5555666665
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.21 Score=42.18 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=80.4
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE-EecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW-KSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
....+..+.-+++|+ +++++.......-|| .|+..+ .....-...|..+.|.|++...+. ...|.|+
T Consensus 143 ~~gs~~~~~r~~dG~---------~vavs~~G~~~~s~~--~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~ 210 (302)
T PF14870_consen 143 TSGSINDITRSSDGR---------YVAVSSRGNFYSSWD--PGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQ 210 (302)
T ss_dssp ----EEEEEE-TTS----------EEEEETTSSEEEEE---TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEE
T ss_pred CcceeEeEEECCCCc---------EEEEECcccEEEEec--CCCccceEEccCccceehhceecCCCCEEEE-eCCcEEE
Confidence 346678888889999 777776555555676 343111 111114578999999999776554 5888888
Q ss_pred EEe-CCCCeEEEE----eecCCCCeeEEEEccCCCEEEEecCcEEEEECCCCceeEEee---cCCCCeEEEEECCCCCEE
Q 036605 99 EMK-SEMGEVIRE----FKASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFS---DDVGPLQYVSASDGAKII 170 (340)
Q Consensus 99 ~wd-~~~~~~~~~----~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l 170 (340)
.=+ ....+.... .......+..+++.+++...+++++-..+.....|+.-.+.. .-......+.|.++.+-+
T Consensus 211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf 290 (302)
T PF14870_consen 211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF 290 (302)
T ss_dssp EEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred EccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence 877 222222221 111223478899999988888877666666777775544432 234567888887666666
Q ss_pred EEEEcCCCeEEEE
Q 036605 171 ITAGYGEKHLQVW 183 (340)
Q Consensus 171 ~s~~~~d~~i~iw 183 (340)
+. +. +|.|--|
T Consensus 291 ~l-G~-~G~ll~~ 301 (302)
T PF14870_consen 291 VL-GQ-DGVLLRY 301 (302)
T ss_dssp EE--S-TTEEEEE
T ss_pred EE-CC-CcEEEEe
Confidence 66 56 7776544
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.46 Score=45.78 Aligned_cols=69 Identities=20% Similarity=0.386 Sum_probs=50.8
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCC-------CeEEEEEec----------------CCCEEEEEeCCCcEEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPG-------GLAGLAFAK----------------KGRSLHVVGTNGMASEM 100 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~-------~v~~v~~~~----------------~~~~l~s~~~dg~i~~w 100 (340)
.|++++.++.|.-.|..+|+.++++...... ....+++.. .+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 6778888999999999999999998641110 012233321 34578889999999999
Q ss_pred eCCCCeEEEEee
Q 036605 101 KSEMGEVIREFK 112 (340)
Q Consensus 101 d~~~~~~~~~~~ 112 (340)
|..+|+.+..+.
T Consensus 276 DA~TGk~~W~fg 287 (764)
T TIGR03074 276 DADTGKLCEDFG 287 (764)
T ss_pred ECCCCCEEEEec
Confidence 999999887653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.32 Score=44.92 Aligned_cols=145 Identities=11% Similarity=0.183 Sum_probs=86.2
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCC-CCC--CeEE-EEEecCCCEEEEEeC------CCcEEEEeCCCCeEEEEeec
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGR-HPG--GLAG-LAFAKKGRSLHVVGT------NGMASEMKSEMGEVIREFKA 113 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~-h~~--~v~~-v~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~ 113 (340)
.++.++.++.|..+|.++|+.++..... +.. .+.+ .... ++ .++.+.. +|.|..+|..+|+.+..+..
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4778889999999999999999887531 111 1211 1111 33 5555432 68999999999998876542
Q ss_pred CCC-------------------------------Ce-eEEEEccCCCEEEEec-------C-----------cEEEEECC
Q 036605 114 SEK-------------------------------PI-SSSAFLCEEKIFALAS-------S-----------EVRILSLE 143 (340)
Q Consensus 114 ~~~-------------------------------~i-~~l~~~~~~~~l~~~~-------~-----------~i~i~d~~ 143 (340)
-.. .+ ..+++.|...+++.+. + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 111 01 1235556555554421 1 27778899
Q ss_pred CCceeEEeecCCCCeE---------EEEECCCCC--EEEEEEcCCCeEEEEEccCCCCCc
Q 036605 144 NGEEVLKFSDDVGPLQ---------YVSASDGAK--IIITAGYGEKHLQVWRCDISSKTV 192 (340)
Q Consensus 144 ~~~~~~~~~~~~~~v~---------~~~~s~~~~--~l~s~~~~d~~i~iwd~~~~~~~~ 192 (340)
+|+..-.|+.....+. -+.+..+|+ -++..+..+|.+.+.|- .+++.
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr--~tG~~ 337 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDR--TNGKL 337 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEEC--CCCce
Confidence 9988766644322221 122234565 34444555999999986 45544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.31 Score=42.23 Aligned_cols=165 Identities=12% Similarity=0.042 Sum_probs=82.3
Q ss_pred cCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEc---CC---CcEEEEEccCCeeEEEecCCCCC--
Q 036605 3 STNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGT---SN---GDILAVDVLTGEMKWKSTGRHPG-- 74 (340)
Q Consensus 3 d~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~---~d---g~i~i~d~~~~~~~~~~~~~h~~-- 74 (340)
|+.+|+....+. -..-+.-+.|||... .+|+.|- .+ ..|.+.+.. |...+.+.. |..
T Consensus 174 dl~tG~~~~v~~-----~~~wlgH~~fsP~dp--------~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~-~~~~e 238 (386)
T PF14583_consen 174 DLKTGERKVVFE-----DTDWLGHVQFSPTDP--------TLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHR-RMEGE 238 (386)
T ss_dssp ETTT--EEEEEE-----ESS-EEEEEEETTEE--------EEEEEEE-S-TTTSS-SEEEEETT-S---EESS----TTE
T ss_pred ECCCCceeEEEe-----cCccccCcccCCCCC--------CEEEEeccCCcceeceEEEEEEcC-CCcceeeec-CCCCc
Confidence 456666555444 224556788898873 0444432 22 244444533 334455544 322
Q ss_pred CeEEEEEecCCCEEEEEe-----CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ecC-------------
Q 036605 75 GLAGLAFAKKGRSLHVVG-----TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-ASS------------- 135 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~-----~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~------------- 135 (340)
.+..=-|.|||..|..-+ .+..|.-+|+.+++....... . ....+-.++||++++. +++
T Consensus 239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-P-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE---------------
T ss_pred ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-C-ceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 344556899998766533 244678889998876443322 1 3445667889998876 221
Q ss_pred ----cEEEEECCCCceeEEeecCC----------C-CeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 136 ----EVRILSLENGEEVLKFSDDV----------G-PLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 136 ----~i~i~d~~~~~~~~~~~~~~----------~-~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
-|++++++.+... .+..|. . .-..+.|+|||++++..+...|...||-+
T Consensus 317 ~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ----EEEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cCCcEEEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 1567888766432 221121 1 12568999999999988887888888866
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.058 Score=49.94 Aligned_cols=99 Identities=14% Similarity=0.238 Sum_probs=70.7
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEe--cCCCEEEEEeCCCcEEEEeCC---------CCeEEEE--
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFA--KKGRSLHVVGTNGMASEMKSE---------MGEVIRE-- 110 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~--~~~~~l~s~~~dg~i~~wd~~---------~~~~~~~-- 110 (340)
..++-+....+.|||...+.....-.-...+.|.++.|. |+++.+++.|....|.++.-. +...+..
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 444455556899999988874433221257799999995 588999999999999988531 1122333
Q ss_pred eecCC-CCeeEEEEccCCCEEEEecCcEEEEEC
Q 036605 111 FKASE-KPISSSAFLCEEKIFALASSEVRILSL 142 (340)
Q Consensus 111 ~~~~~-~~i~~l~~~~~~~~l~~~~~~i~i~d~ 142 (340)
+..+. .+|.+..|.++|..++.+++.+.|+|-
T Consensus 123 i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred eecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 22233 578899999999999999999999974
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.27 Score=40.30 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=82.3
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC--CC---Ce
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKAS--EK---PI 118 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~---~i 118 (340)
+...--.++...+||..+-+.+.++. ..+.=..++ .++..|+.......+..+|..+.+....+... .. .+
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~--y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFP--YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EEEEEecCCeEEEEccccceEEEEEe--cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence 66667788999999999998888886 345567777 35777777777789999999988776665422 22 34
Q ss_pred eEEEEccCCCEEEE--ecCcEEEEECCCCceeEEeec------------C---CCCeEEEEECCCCCEEEEEEc
Q 036605 119 SSSAFLCEEKIFAL--ASSEVRILSLENGEEVLKFSD------------D---VGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 119 ~~l~~~~~~~~l~~--~~~~i~i~d~~~~~~~~~~~~------------~---~~~v~~~~~s~~~~~l~s~~~ 175 (340)
..+.+- +|.+.|= ....|...|..+|+....+.. + ..-.+.+++.|....|+.+|.
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 556665 4544433 333488889999987754410 1 245789999888777777665
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.01 Score=46.68 Aligned_cols=100 Identities=11% Similarity=0.131 Sum_probs=62.2
Q ss_pred EEEEEcCCCcEEEEEccCC-eeEEEecCCCCCCe-EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC-CCeeE
Q 036605 44 LLALGTSNGDILAVDVLTG-EMKWKSTGRHPGGL-AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASE-KPISS 120 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~-~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~i~~ 120 (340)
-+++|+.+|.|.+|+.... ...-.+.. -...| ..+.--.++.+..+++.||.|+.|++...+.+.....|. .++..
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhc-ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 6899999999999986621 11111111 11223 223333355688889999999999999988877766666 45555
Q ss_pred EEEccCCCEEEEe----cCcEEEEECCC
Q 036605 121 SAFLCEEKIFALA----SSEVRILSLEN 144 (340)
Q Consensus 121 l~~~~~~~~l~~~----~~~i~i~d~~~ 144 (340)
+.++..+++++.+ +..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 5555555555443 22266666643
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.27 Score=45.68 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=49.2
Q ss_pred EEEEEcCCC------cEEEEEccCCeeEEEecCCCCCCe-EEEEEecCCCEEEEEeCC-----CcEEEEeCCCCeEEEE-
Q 036605 44 LLALGTSNG------DILAVDVLTGEMKWKSTGRHPGGL-AGLAFAKKGRSLHVVGTN-----GMASEMKSEMGEVIRE- 110 (340)
Q Consensus 44 ~l~~g~~dg------~i~i~d~~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~- 110 (340)
+++.|+.++ .+..||..+.+.. .+........ .+++ .-++..++.||.+ ..+..||+.+.+-...
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 666666542 5778998877643 2222011111 1222 2256666667755 3477788776542211
Q ss_pred -eecCCCCeeEEEEccCCCEEEEec--------CcEEEEECCCCc
Q 036605 111 -FKASEKPISSSAFLCEEKIFALAS--------SEVRILSLENGE 146 (340)
Q Consensus 111 -~~~~~~~i~~l~~~~~~~~l~~~~--------~~i~i~d~~~~~ 146 (340)
+...... .+++ .-++++.+.|+ .++..||..+.+
T Consensus 375 ~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 375 PLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 1111111 1222 23455555554 238889987754
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.41 Score=40.09 Aligned_cols=195 Identities=16% Similarity=0.146 Sum_probs=107.1
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEe-------------cCCCCCCeEEEE--EecCCCE
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKS-------------TGRHPGGLAGLA--FAKKGRS 87 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-------------~~~h~~~v~~v~--~~~~~~~ 87 (340)
.|+.+...|+-. .|++- .|+.++++++..-.....- .-.....+...+ -...+..
T Consensus 37 ~I~ql~vl~~~~---------~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~ 106 (275)
T PF00780_consen 37 SITQLSVLPELN---------LLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR 106 (275)
T ss_pred eEEEEEEecccC---------EEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccce
Confidence 488888888776 34433 4599999998764432210 000222344444 1123334
Q ss_pred EEEEeCCCcEEEEeCCCC-----eEEEEeecCCCCeeEEEEccCCCEEEEe-cCcEEEEECCCCceeEEeecC-------
Q 036605 88 LHVVGTNGMASEMKSEMG-----EVIREFKASEKPISSSAFLCEEKIFALA-SSEVRILSLENGEEVLKFSDD------- 154 (340)
Q Consensus 88 l~s~~~dg~i~~wd~~~~-----~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~~i~i~d~~~~~~~~~~~~~------- 154 (340)
.+.+.....|.+|..... +...++.. ...+.+++|. +..++.+ .....+.|+.++....-+...
T Consensus 107 ~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~ 183 (275)
T PF00780_consen 107 RLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFK 183 (275)
T ss_pred EEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhh
Confidence 444455558888776553 34455554 3667888888 4455554 566999999977543322111
Q ss_pred -----CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCc
Q 036605 155 -----VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGV 229 (340)
Q Consensus 155 -----~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~ 229 (340)
..++..+..+ ++.+|++ . +..-.+.+. .++..+...+.....+..+.+ . ..+|++.+.++
T Consensus 184 ~~~~~~~~~~~~~~~-~~e~Ll~--~-~~~g~fv~~---~G~~~r~~~i~W~~~p~~~~~--~-----~pyli~~~~~~- 248 (275)
T PF00780_consen 184 SRNSSSKPLGIFQLS-DNEFLLC--Y-DNIGVFVNK---NGEPSRKSTIQWSSAPQSVAY--S-----SPYLIAFSSNS- 248 (275)
T ss_pred hcccCCCceEEEEeC-CceEEEE--e-cceEEEEcC---CCCcCcccEEEcCCchhEEEE--E-----CCEEEEECCCE-
Confidence 1233333443 4556665 3 344444554 344444334444444444433 1 24677766655
Q ss_pred EEEEECCCCCccCCCC
Q 036605 230 AYSWDLKTVSQDEKTN 245 (340)
Q Consensus 230 i~vwd~~~~~~~~~~~ 245 (340)
|.||++.+++.+..+.
T Consensus 249 iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 249 IEVRSLETGELVQTIP 264 (275)
T ss_pred EEEEECcCCcEEEEEE
Confidence 9999999987766333
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.3 Score=46.85 Aligned_cols=177 Identities=11% Similarity=0.027 Sum_probs=108.4
Q ss_pred cEEEEEccCCeeEEEecCCCCC---CeEEEEEecC-CCEEEEEeC----------CCcEEEEeCCCCeEEEEeecC--CC
Q 036605 53 DILAVDVLTGEMKWKSTGRHPG---GLAGLAFAKK-GRSLHVVGT----------NGMASEMKSEMGEVIREFKAS--EK 116 (340)
Q Consensus 53 ~i~i~d~~~~~~~~~~~~~h~~---~v~~v~~~~~-~~~l~s~~~----------dg~i~~wd~~~~~~~~~~~~~--~~ 116 (340)
.++++|-.+-+.++..+-.... .|.++.|..| +.+++.|.. .|.|.++....++.+.....+ ++
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 3567776666655443321222 3455568777 556666532 367777777664333333222 23
Q ss_pred CeeEEEEccCCCEEEEecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCc
Q 036605 117 PISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGP 196 (340)
Q Consensus 117 ~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~ 196 (340)
.+.++.. -+|+++|.-+..|++|++.+.+.++.-..+..++..+...-.|..++.+.. -+.+.+...+...+......
T Consensus 831 av~aL~~-fngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl-m~Sitll~y~~~eg~f~evA 908 (1096)
T KOG1897|consen 831 AVYALVE-FNGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDL-MRSITLLQYKGDEGNFEEVA 908 (1096)
T ss_pred ceeehhh-hCCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeec-cceEEEEEEeccCCceEEee
Confidence 3444432 258888888888999999999888777788889999999888999999776 77777776643332221111
Q ss_pred eeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 197 ALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
. --++.|...+ . .-++..++.+..+|.+++....+
T Consensus 909 r--D~~p~Wmtav--e--il~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 909 R--DYNPNWMTAV--E--ILDDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred h--hhCccceeeE--E--EecCceEEeecccccEEEEEecC
Confidence 1 1233444433 2 23456677777888888876554
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.35 Score=42.54 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=77.1
Q ss_pred CCeEEEEeeccccccccccCceEEEEEc-----------CCC-cEEEEEccC--Ce--eEEEecCCCCCCeEEEEEecCC
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGT-----------SNG-DILAVDVLT--GE--MKWKSTGRHPGGLAGLAFAKKG 85 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~-----------~dg-~i~i~d~~~--~~--~~~~~~~~h~~~v~~v~~~~~~ 85 (340)
.....|+|.++|+ ++++-. ..+ .|.+++-.+ |+ ....+.. .......+++.+++
T Consensus 14 ~~P~~ia~d~~G~---------l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G 83 (367)
T TIGR02604 14 RNPIAVCFDERGR---------LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG 83 (367)
T ss_pred CCCceeeECCCCC---------EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC
Confidence 4567899999999 555532 223 787776543 32 2233333 33356889999888
Q ss_pred CEEEEEeCCCcEEEE-eCCC-----Ce--EEE-EeecC----CCCeeEEEEccCCCEEEEec------------------
Q 036605 86 RSLHVVGTNGMASEM-KSEM-----GE--VIR-EFKAS----EKPISSSAFLCEEKIFALAS------------------ 134 (340)
Q Consensus 86 ~~l~s~~~dg~i~~w-d~~~-----~~--~~~-~~~~~----~~~i~~l~~~~~~~~l~~~~------------------ 134 (340)
|+.++.. .|..| |... ++ .+. .+... ......+++.|||.+.++.+
T Consensus 84 --lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 84 --VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred --EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence 5555544 45444 4421 12 111 13221 23467899999998776533
Q ss_pred ---CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEE
Q 036605 135 ---SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 135 ---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 173 (340)
+.|.-++..+++ +..+.........++|+++|..+++-
T Consensus 161 ~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 161 GLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEc
Confidence 114444544443 22332222334689999999887663
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.014 Score=55.83 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=54.5
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEE---EEEecCCCEEEEEeCCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAG---LAFAKKGRSLHVVGTNG 95 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~---v~~~~~~~~l~s~~~dg 95 (340)
+..++|+|++|+.+|+ +++.|-.+|.|.+||+..++..+.+.. |..+.++ +.+..++..++++...|
T Consensus 128 ~v~~~Vtsvafn~dg~---------~l~~G~~~G~V~v~D~~~~k~l~~i~e-~~ap~t~vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQDGS---------LLLAGLGDGHVTVWDMHRAKILKVITE-HGAPVTGVIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred ccCCcceeeEecCCCc---------eeccccCCCcEEEEEccCCcceeeeee-cCCccceEEEEEEeCCCcEEEEccCCC
Confidence 3458999999999999 999999999999999999988877766 5544444 34444666788887778
Q ss_pred cE
Q 036605 96 MA 97 (340)
Q Consensus 96 ~i 97 (340)
.+
T Consensus 198 sf 199 (1206)
T KOG2079|consen 198 SF 199 (1206)
T ss_pred ce
Confidence 63
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.38 Score=38.37 Aligned_cols=91 Identities=11% Similarity=0.158 Sum_probs=62.0
Q ss_pred CeEEEEEecCCCEEEEE-eCCCcEEEEe--CCCCeE-----EEEeec----CCCCeeEEEEccCCCEEEE--ecCcEEEE
Q 036605 75 GLAGLAFAKKGRSLHVV-GTNGMASEMK--SEMGEV-----IREFKA----SEKPISSSAFLCEEKIFAL--ASSEVRIL 140 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~-~~dg~i~~wd--~~~~~~-----~~~~~~----~~~~i~~l~~~~~~~~l~~--~~~~i~i~ 140 (340)
.-+.++|+.+.+.++.. +.+-.|.-|| ..+|.. +..++. ..-..-.+++..+|.+.++ .+++|...
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 34678999888776665 4566776677 666643 222221 1112234566667776654 55669999
Q ss_pred ECCCCceeEEeecCCCCeEEEEECC
Q 036605 141 SLENGEEVLKFSDDVGPLQYVSASD 165 (340)
Q Consensus 141 d~~~~~~~~~~~~~~~~v~~~~~s~ 165 (340)
|..+|+.+.++.-....+++++|-.
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecC
Confidence 9999999999988888999999953
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.014 Score=33.88 Aligned_cols=34 Identities=6% Similarity=0.058 Sum_probs=29.8
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCe
Q 036605 72 HPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGE 106 (340)
Q Consensus 72 h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~ 106 (340)
....|.+++|+|....|+.+..+|.|.++.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3457999999999999999999999999988 444
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.1 Score=43.06 Aligned_cols=109 Identities=12% Similarity=0.024 Sum_probs=66.8
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCC-----CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC--
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSN-----GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN-- 94 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-- 94 (340)
-.+..+.|||+++ +|+.+... ..|++.|+.+|..+..... . .-..++|.+|++.|+....+
T Consensus 127 ~~l~~~~~Spdg~---------~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-~--~~~~~~w~~D~~~~~y~~~~~~ 194 (686)
T PRK10115 127 YTLGGMAITPDNT---------IMALAEDFLSRRQYGIRFRNLETGNWYPELLD-N--VEPSFVWANDSWTFYYVRKHPV 194 (686)
T ss_pred EEEeEEEECCCCC---------EEEEEecCCCcEEEEEEEEECCCCCCCCcccc-C--cceEEEEeeCCCEEEEEEecCC
Confidence 4567788999998 77765432 4688999988863322211 1 12569999999876665432
Q ss_pred ----CcEEEEeCCCC--eEEEEeecCCCCee-EEEEccCCCEEEEe-----cCcEEEEEC
Q 036605 95 ----GMASEMKSEMG--EVIREFKASEKPIS-SSAFLCEEKIFALA-----SSEVRILSL 142 (340)
Q Consensus 95 ----g~i~~wd~~~~--~~~~~~~~~~~~i~-~l~~~~~~~~l~~~-----~~~i~i~d~ 142 (340)
..|..+++.++ +....+........ .+..+.++++++.. ++.+.+++.
T Consensus 195 ~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 195 TLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 36788888887 33334443333333 33445578776551 223888884
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.67 Score=40.14 Aligned_cols=151 Identities=14% Similarity=0.040 Sum_probs=86.9
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEM 100 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~w 100 (340)
...+.++.+.|++. ++++| ..|.+..-.-..++.-......-...++++.+.++++.++. +..|.+.+=
T Consensus 172 ~g~~~~i~~~~~g~---------~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~ 240 (334)
T PRK13684 172 AGVVRNLRRSPDGK---------YVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFN 240 (334)
T ss_pred cceEEEEEECCCCe---------EEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEc
Confidence 35678888888877 55555 45655432112222122222224467899999998876665 556766543
Q ss_pred eCCCCeEEEEeec----CCCCeeEEEEccCCCEEEEecCcEEEEECCCCceeEEee---cCCCCeEEEEECCCCCEEEEE
Q 036605 101 KSEMGEVIREFKA----SEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFS---DDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 101 d~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~ 173 (340)
....|..-..... ....+..+.+.|++..++++..-..+.....++.-.... .-......+.|..+++.+++
T Consensus 241 s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~- 319 (334)
T PRK13684 241 DPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL- 319 (334)
T ss_pred cCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-
Confidence 3444443222211 123477889999888777655444445555554333332 22245778888777777666
Q ss_pred EcCCCeEEEEE
Q 036605 174 GYGEKHLQVWR 184 (340)
Q Consensus 174 ~~~d~~i~iwd 184 (340)
+. .|.|--|+
T Consensus 320 G~-~G~il~~~ 329 (334)
T PRK13684 320 GQ-RGVLLRYV 329 (334)
T ss_pred CC-CceEEEec
Confidence 55 68887776
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.1 Score=39.62 Aligned_cols=135 Identities=10% Similarity=0.046 Sum_probs=71.0
Q ss_pred CcEEEEEccCCeeEEEecC--CCCCCeEEEEEecCCCEEEEEeC--------------------CCcEEEEeCCCCeEEE
Q 036605 52 GDILAVDVLTGEMKWKSTG--RHPGGLAGLAFAKKGRSLHVVGT--------------------NGMASEMKSEMGEVIR 109 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~--------------------dg~i~~wd~~~~~~~~ 109 (340)
|-+.++|-++.+....+.. .....-+.+-|.|..+.++|... ...+.+||+.+.+.++
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q 236 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ 236 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence 5688889888777777654 12334578888998888888432 2479999999999999
Q ss_pred EeecCCCC--eeEEEEccC--CCEEEE---ecCcEEEE-ECCCCc----eeEEeec-----------------CCCCeEE
Q 036605 110 EFKASEKP--ISSSAFLCE--EKIFAL---ASSEVRIL-SLENGE----EVLKFSD-----------------DVGPLQY 160 (340)
Q Consensus 110 ~~~~~~~~--i~~l~~~~~--~~~l~~---~~~~i~i~-d~~~~~----~~~~~~~-----------------~~~~v~~ 160 (340)
.+...... ...|.|..+ ..+-++ -+.+|..| ....++ .+..+.. -..-|+.
T Consensus 237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 98765433 345556543 333222 22334443 323332 1122211 1345789
Q ss_pred EEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 161 VSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 161 ~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
+.+|.|.++|+.+...+|.|+.||+.
T Consensus 317 I~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred EEEccCCCEEEEEcccCCcEEEEecC
Confidence 99999999999999999999999993
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.67 Score=37.05 Aligned_cols=189 Identities=14% Similarity=0.139 Sum_probs=103.2
Q ss_pred EEEEEcCCCcEEEEEccCCeeEE-EecCCCCCCeEEEEEecCC---CEEEEEeCCCcEEEEeCC--CCeEEEEee-----
Q 036605 44 LLALGTSNGDILAVDVLTGEMKW-KSTGRHPGGLAGLAFAKKG---RSLHVVGTNGMASEMKSE--MGEVIREFK----- 112 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~-~~~~~h~~~v~~v~~~~~~---~~l~s~~~dg~i~~wd~~--~~~~~~~~~----- 112 (340)
++.+--..|.|+-||.+..+... ++.+ . ...++.+--.+ .+.+.++..-.|.-||.. ......++.
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~-p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEG-P--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEec-C--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 67777778888889988765433 2332 1 23333332222 244445555556667733 223333311
Q ss_pred cCCCCeeEEEEccCCCEEEEe-c----------CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEE
Q 036605 113 ASEKPISSSAFLCEEKIFALA-S----------SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQ 181 (340)
Q Consensus 113 ~~~~~i~~l~~~~~~~~l~~~-~----------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~ 181 (340)
..+.....-.++|+|++++.. . +.++.|-+.. .+..+...-.--+.++|+.+.+.++...+.+-.|.
T Consensus 106 ~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred HHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 113345566788999996541 1 1144443322 22223333344567899988888877666577888
Q ss_pred EEEccCCCCCccCC-ceeeecCC-------CeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 182 VWRCDISSKTVNKG-PALSMRHS-------PVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 182 iwd~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
-||.+.+++..... ..+.+... +--..+ ..+|...++.-..|+|..+|..+++.+.
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I-----D~eG~L~Va~~ng~~V~~~dp~tGK~L~ 247 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI-----DTEGNLYVATFNGGTVQKVDPTTGKILL 247 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceE-----ccCCcEEEEEecCcEEEEECCCCCcEEE
Confidence 89976566644321 11111110 111111 3466677777778888888888887665
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.46 Score=43.14 Aligned_cols=146 Identities=13% Similarity=0.118 Sum_probs=84.9
Q ss_pred CCeEEEEeeccccccccccCceEEEEEc--CCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCC----CEEEEEeCCC
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGT--SNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKG----RSLHVVGTNG 95 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~----~~l~s~~~dg 95 (340)
-++..++|. ||+ ..+.+.- .+|.+.+=| .+.+..| ..|.+++|.|-+ ..|++.-...
T Consensus 20 HPvhGlaWT-DGk--------qVvLT~L~l~~gE~kfGd---s~viGqF-----EhV~GlsW~P~~~~~~paLLAVQHkk 82 (671)
T PF15390_consen 20 HPVHGLAWT-DGK--------QVVLTDLQLHNGEPKFGD---SKVIGQF-----EHVHGLSWAPPCTADTPALLAVQHKK 82 (671)
T ss_pred ccccceEec-CCC--------EEEEEeeeeeCCccccCC---ccEeecc-----ceeeeeeecCcccCCCCceEEEeccc
Confidence 367788887 454 0344332 334433322 1233333 358999999853 2456667788
Q ss_pred cEEEEeCCC-----CeEEEEeecC---CC--CeeEEEEccCCCEEEE-ecCcE-EEEECCCCc--eeEEeecCCCCeEEE
Q 036605 96 MASEMKSEM-----GEVIREFKAS---EK--PISSSAFLCEEKIFAL-ASSEV-RILSLENGE--EVLKFSDDVGPLQYV 161 (340)
Q Consensus 96 ~i~~wd~~~-----~~~~~~~~~~---~~--~i~~l~~~~~~~~l~~-~~~~i-~i~d~~~~~--~~~~~~~~~~~v~~~ 161 (340)
.|.+|.+.. ++.+..-..+ .- -...+.|+|....|++ ..+++ .+++.+... ....+ ...+.|.+.
T Consensus 83 hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCA 161 (671)
T PF15390_consen 83 HVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCA 161 (671)
T ss_pred eEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEE
Confidence 999998752 2222221111 11 1245679999988866 55554 344554322 22333 346789999
Q ss_pred EECCCCCEEEEEEcCCCeEEEEEc
Q 036605 162 SASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 162 ~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
+|..||+.|+.+-...=.-+|||-
T Consensus 162 CWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 162 CWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EecCcCCEEEEEeCCeEEEEEecC
Confidence 999999998886543344567773
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.8 Score=41.87 Aligned_cols=196 Identities=14% Similarity=0.025 Sum_probs=114.5
Q ss_pred CeEEEEeecc-ccccccccCceEEEEEcC----------CCcEEEEEccCCeeEEEecC-CCCCCeEEEEEecCCCEEEE
Q 036605 23 SYSCLACGFV-GKKRRKERGTLLLALGTS----------NGDILAVDVLTGEMKWKSTG-RHPGGLAGLAFAKKGRSLHV 90 (340)
Q Consensus 23 ~v~~l~~sp~-~~~~~~~~~~~~l~~g~~----------dg~i~i~d~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s 90 (340)
.|.+..|..| +. ++++|+. .|.|.+|....++.+..+.. .-.+.+.++..- +|++|+
T Consensus 776 Si~s~~~~~d~~t---------~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA- 844 (1096)
T KOG1897|consen 776 SIISCKFTDDPNT---------YYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA- 844 (1096)
T ss_pred eeeeeeecCCCce---------EEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE-
Confidence 3444557766 45 7888753 48889988877433333322 134566666543 466555
Q ss_pred EeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc----EEEEECCCCceeEEe-ecCCCCeEEEEECC
Q 036605 91 VGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE----VRILSLENGEEVLKF-SDDVGPLQYVSASD 165 (340)
Q Consensus 91 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~----i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~ 165 (340)
+-...|++|++.+.+.++.-..+..++..+.+.-.|..++++|-- +..|+-..|.....- .-++.+.+++.+-.
T Consensus 845 -~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~ 923 (1096)
T KOG1897|consen 845 -GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD 923 (1096)
T ss_pred -ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEec
Confidence 445689999998887666655667788888888889999887754 444444444222111 34567888888887
Q ss_pred CCCEEEEEEcCCCeEEEEEccCCCCCccC-------------CceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEE
Q 036605 166 GAKIIITAGYGEKHLQVWRCDISSKTVNK-------------GPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYS 232 (340)
Q Consensus 166 ~~~~l~s~~~~d~~i~iwd~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~v 232 (340)
+..|+.+ ..+|.+.+-..+....+... .....+.|...+....... .+-+..++.|+.+|.|-+
T Consensus 924 ~d~ylga--e~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~-~~~~~~vlfgTv~GsIG~ 1000 (1096)
T KOG1897|consen 924 DDTYLGA--ENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSM-IPLEPKVLFGTVNGSIGI 1000 (1096)
T ss_pred CceEEee--cccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccc-cCCCCcEEEEEccceEEE
Confidence 7766655 33677776665322211100 1111122333333311111 344555888999998865
Q ss_pred E
Q 036605 233 W 233 (340)
Q Consensus 233 w 233 (340)
.
T Consensus 1001 i 1001 (1096)
T KOG1897|consen 1001 I 1001 (1096)
T ss_pred E
Confidence 4
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.81 Score=37.58 Aligned_cols=163 Identities=13% Similarity=0.104 Sum_probs=83.0
Q ss_pred CCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe------eEEEe----cCCCCCC
Q 036605 6 DGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE------MKWKS----TGRHPGG 75 (340)
Q Consensus 6 ~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~------~~~~~----~~~h~~~ 75 (340)
+|+++..+.- ......-.+++..++. ++++--.++.+.++++.... ....+ ...+...
T Consensus 52 ~G~vlr~i~l---~g~~D~EgI~y~g~~~---------~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G 119 (248)
T PF06977_consen 52 DGKVLRRIPL---DGFGDYEGITYLGNGR---------YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKG 119 (248)
T ss_dssp T--EEEEEE----SS-SSEEEEEE-STTE---------EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS-
T ss_pred CCCEEEEEeC---CCCCCceeEEEECCCE---------EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcc
Confidence 4566655552 2235666777776667 66666668999999883321 11122 1124557
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCC---CeEEEE-----ee---cCCCCeeEEEEccCCCEEEE-ecCc--EEEEE
Q 036605 76 LAGLAFAKKGRSLHVVGTNGMASEMKSEM---GEVIRE-----FK---ASEKPISSSAFLCEEKIFAL-ASSE--VRILS 141 (340)
Q Consensus 76 v~~v~~~~~~~~l~s~~~dg~i~~wd~~~---~~~~~~-----~~---~~~~~i~~l~~~~~~~~l~~-~~~~--i~i~d 141 (340)
+-.++|++.++.|+.+-...-..+|.+.. ...+.. +. ..-..+++++++|....|+. .+.. |..+|
T Consensus 120 ~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 120 FEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp -EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred eEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence 89999999888888876665555554432 111111 11 12345789999997655544 3333 88888
Q ss_pred CCCCceeEEeecCC---------CCeEEEEECCCCCEEEEEEcCCCeEEEE
Q 036605 142 LENGEEVLKFSDDV---------GPLQYVSASDGAKIIITAGYGEKHLQVW 183 (340)
Q Consensus 142 ~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~s~~~~d~~i~iw 183 (340)
.+|+.+..+.-.. ...-.|+|.++|+..++ +. -+..++|
T Consensus 200 -~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sE-pNlfy~f 247 (248)
T PF06977_consen 200 -RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SE-PNLFYRF 247 (248)
T ss_dssp -TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ET-TTEEEEE
T ss_pred -CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cC-CceEEEe
Confidence 5665554442221 34678999999966555 56 5555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.76 E-value=2.1 Score=41.46 Aligned_cols=144 Identities=16% Similarity=0.192 Sum_probs=83.9
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeE-------------EEEEec--CCCEEEEEeC----------CCcEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLA-------------GLAFAK--KGRSLHVVGT----------NGMAS 98 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~-------------~v~~~~--~~~~l~s~~~----------dg~i~ 98 (340)
.++.++.|+.+.-.|.++|+..+.+.. .+.|. .+.-.| .+..++.++. +|.|+
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 688899999999999999998887642 22221 111111 1345666643 68899
Q ss_pred EEeCCCCeEEEEeecCC---------C--------Ce-eEEEEccCCCEEEEec--------------------CcEEEE
Q 036605 99 EMKSEMGEVIREFKASE---------K--------PI-SSSAFLCEEKIFALAS--------------------SEVRIL 140 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~---------~--------~i-~~l~~~~~~~~l~~~~--------------------~~i~i~ 140 (340)
-+|..+|+.+..+.... . .+ ..+++.++...++... +.|.-.
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 99999999988765210 0 01 1234444444443311 117778
Q ss_pred ECCCCceeEEeecCCCCeE---------EEEECC-CCC---EEEEEEcCCCeEEEEEccCCCCCc
Q 036605 141 SLENGEEVLKFSDDVGPLQ---------YVSASD-GAK---IIITAGYGEKHLQVWRCDISSKTV 192 (340)
Q Consensus 141 d~~~~~~~~~~~~~~~~v~---------~~~~s~-~~~---~l~s~~~~d~~i~iwd~~~~~~~~ 192 (340)
|.++|+..-.++.....+. -+.+.. +|+ .++. +..+|.+.+.|- .+++.
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~-~~K~G~~~vlDr--~tG~~ 481 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVA-PTKQGQIYVLDR--RTGEP 481 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEE-ECCCCEEEEEEC--CCCCE
Confidence 8889988766643221111 112222 453 4555 444899999987 45543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.98 Score=41.15 Aligned_cols=117 Identities=11% Similarity=0.038 Sum_probs=71.5
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc-----CCeeEEE----ecCCCCCCeEEEEEecCCCEEEEEe
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL-----TGEMKWK----STGRHPGGLAGLAFAKKGRSLHVVG 92 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~-----~~~~~~~----~~~~h~~~v~~v~~~~~~~~l~s~~ 92 (340)
+-|..+.|+|-+. .+...|.+......|.+|.+. .++.+.. +....+---.++.|+|....|+.-.
T Consensus 57 EhV~GlsW~P~~~-----~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 57 EHVHGLSWAPPCT-----ADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred ceeeeeeecCccc-----CCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence 4688999998763 112234555567789999875 2222211 1110111124678999888777655
Q ss_pred CCCcEEEEeCCCC--eEEEEeecCCCCeeEEEEccCCCEEEEecCc---EEEEECCC
Q 036605 93 TNGMASEMKSEMG--EVIREFKASEKPISSSAFLCEEKIFALASSE---VRILSLEN 144 (340)
Q Consensus 93 ~dg~i~~wd~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~---i~i~d~~~ 144 (340)
....-.++++... +....++ ..+.|+|.+|.+||+.|+++-+. -++||-..
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 5444445554433 3333443 46789999999999999886555 78888543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.5 Score=39.28 Aligned_cols=171 Identities=10% Similarity=0.104 Sum_probs=86.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCC----------CcEEEEEccCCee--EEEe
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSN----------GDILAVDVLTGEM--KWKS 68 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d----------g~i~i~d~~~~~~--~~~~ 68 (340)
|+|+.+|+.+..-.+ ......+.|.++++ .++.+...+ ..|+.|.+.++.. ...+
T Consensus 154 v~Dl~tg~~l~d~i~-----~~~~~~~~W~~d~~--------~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf 220 (414)
T PF02897_consen 154 VFDLETGKFLPDGIE-----NPKFSSVSWSDDGK--------GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF 220 (414)
T ss_dssp EEETTTTEEEEEEEE-----EEESEEEEECTTSS--------EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE
T ss_pred EEECCCCcCcCCccc-----ccccceEEEeCCCC--------EEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE
Confidence 357777766543210 11223499999986 134444332 2377777766542 2334
Q ss_pred cCCCCCC-eEEEEEecCCCEEEEEeCC----CcEEEEeCCCC----eEEEEeecCCCCe-eEEEEccCCCEEEEecCc--
Q 036605 69 TGRHPGG-LAGLAFAKKGRSLHVVGTN----GMASEMKSEMG----EVIREFKASEKPI-SSSAFLCEEKIFALASSE-- 136 (340)
Q Consensus 69 ~~~h~~~-v~~v~~~~~~~~l~s~~~d----g~i~~wd~~~~----~~~~~~~~~~~~i-~~l~~~~~~~~l~~~~~~-- 136 (340)
....... ...+..++|+++|+..... ..+.+.++..+ .....+......+ ..+... .+.+++..+..
T Consensus 221 e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~ 299 (414)
T PF02897_consen 221 EEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAP 299 (414)
T ss_dssp C-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-T
T ss_pred eecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCC
Confidence 4322333 6788899999987754322 35788888764 1222333333333 334333 44444443322
Q ss_pred ---EEEEECCCCce---eEEeecCCCCeEEEEECCCCCEEEEEEcCCC--eEEEEEc
Q 036605 137 ---VRILSLENGEE---VLKFSDDVGPLQYVSASDGAKIIITAGYGEK--HLQVWRC 185 (340)
Q Consensus 137 ---i~i~d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~--~i~iwd~ 185 (340)
|...++..... ...+..+...+.-..+...+.+|+.....++ .|.++++
T Consensus 300 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 300 NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence 66677776652 2244555543333333334556665554344 5677776
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.95 Score=42.29 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=54.1
Q ss_pred EEEEEcCC------CcEEEEEccCCeeEEEecCCCCCCe-EEEEEecCCCEEEEEeCCC-----cEEEEeCCCCeEEEEe
Q 036605 44 LLALGTSN------GDILAVDVLTGEMKWKSTGRHPGGL-AGLAFAKKGRSLHVVGTNG-----MASEMKSEMGEVIREF 111 (340)
Q Consensus 44 ~l~~g~~d------g~i~i~d~~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~ 111 (340)
+.++|+.| .++..||..+.+... +..-..... .+++. -+|...+.||.|| .|..||..+.+--..
T Consensus 335 lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v- 411 (571)
T KOG4441|consen 335 LYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV- 411 (571)
T ss_pred EEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEE-ECCEEEEEeccccccccccEEEecCCCCccccc-
Confidence 78888888 367789988876332 221011111 12221 2577778888885 477888776542111
Q ss_pred ecCCCCeeEEEEc-cCCCEEEEecCc--------EEEEECCCCce
Q 036605 112 KASEKPISSSAFL-CEEKIFALASSE--------VRILSLENGEE 147 (340)
Q Consensus 112 ~~~~~~i~~l~~~-~~~~~l~~~~~~--------i~i~d~~~~~~ 147 (340)
..........+.. -+|++.++++.+ +..||..+++-
T Consensus 412 a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 412 APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence 1111122333222 345555555522 88899887643
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.028 Score=44.32 Aligned_cols=138 Identities=11% Similarity=0.095 Sum_probs=67.4
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-EEeecCCCCeeE-E
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVI-REFKASEKPISS-S 121 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~i~~-l 121 (340)
+|..-+.+|.|.-+++..-+...+-..-|...-..+. -+..++.|+.+|.|.+|...--... ..+......|.+ |
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 3444556777777766544322222111222211222 2457899999999999987621111 111111222222 2
Q ss_pred EEccCCCEEEE--ecCcEEEEECCCCceeEEeecCC-CCeEEEEECCCCCEEEEE--EcCCCeEEEEEc
Q 036605 122 AFLCEEKIFAL--ASSEVRILSLENGEEVLKFSDDV-GPLQYVSASDGAKIIITA--GYGEKHLQVWRC 185 (340)
Q Consensus 122 ~~~~~~~~l~~--~~~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~--~~~d~~i~iwd~ 185 (340)
....++.+..+ .++.|+.|+..-++.+.....|. .++.....+..+.++..+ +. |..++.|++
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~-d~~~k~W~v 176 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSH-DRVLKKWNV 176 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeecccc-chhhhhcch
Confidence 22233334433 44459999988877666555555 333333333334444443 23 445555554
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.82 Score=42.69 Aligned_cols=134 Identities=12% Similarity=0.115 Sum_probs=66.4
Q ss_pred EEEEEcCCC-----cEEEEEccCCeeEEEecCCCCCCe--EEEEEecCCCEEEEEeCCC---------------------
Q 036605 44 LLALGTSNG-----DILAVDVLTGEMKWKSTGRHPGGL--AGLAFAKKGRSLHVVGTNG--------------------- 95 (340)
Q Consensus 44 ~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~h~~~v--~~v~~~~~~~~l~s~~~dg--------------------- 95 (340)
+.+.|+.++ ++..||..+.+... +.. -..+. .+++ .-++...+.||.++
T Consensus 354 IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~-mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 430 (557)
T PHA02713 354 IYAIGGQNGTNVERTIECYTMGDDKWKM-LPD-MPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS 430 (557)
T ss_pred EEEECCcCCCCCCceEEEEECCCCeEEE-CCC-CCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccc
Confidence 777777654 47889988775332 111 11111 1112 22566666676542
Q ss_pred --cEEEEeCCCCeEEEE--eecCCCCeeEEEEccCCCEEEEecC--------cEEEEECCC-Cce--eEEeecCCCCeEE
Q 036605 96 --MASEMKSEMGEVIRE--FKASEKPISSSAFLCEEKIFALASS--------EVRILSLEN-GEE--VLKFSDDVGPLQY 160 (340)
Q Consensus 96 --~i~~wd~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~~--------~i~i~d~~~-~~~--~~~~~~~~~~v~~ 160 (340)
.+..||+.+.+-... +...... .+++ .-++++.+.|+. .+..||..+ .+- +..+.........
T Consensus 431 ~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 431 SNKVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred cceEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 477788876543211 1111111 1222 234555555542 167888886 432 2223222222333
Q ss_pred EEECCCCCEEEEEEcCCC--eEEEEEc
Q 036605 161 VSASDGAKIIITAGYGEK--HLQVWRC 185 (340)
Q Consensus 161 ~~~s~~~~~l~s~~~~d~--~i~iwd~ 185 (340)
+.+ +++..++||. ++ .+..||.
T Consensus 509 ~~~--~~~iyv~Gg~-~~~~~~e~yd~ 532 (557)
T PHA02713 509 ILH--DNTIMMLHCY-ESYMLQDTFNV 532 (557)
T ss_pred EEE--CCEEEEEeee-cceeehhhcCc
Confidence 333 5666677666 66 6677776
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.3 Score=36.59 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=87.7
Q ss_pred CCeEEEEeeccccccccccCceEEEEEc---CCCcEEEEEccCCeeEEEe-cCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGT---SNGDILAVDVLTGEMKWKS-TGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~---~dg~i~i~d~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
..+...+++++++ .+|... ....++++. .+.....+ .+ ..+....|++++...+....+...
T Consensus 24 ~~~~s~AvS~dg~---------~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g---~~l~~PS~d~~g~~W~v~~~~~~~ 89 (253)
T PF10647_consen 24 YDVTSPAVSPDGS---------RVAAVSEGDGGRSLYVGP--AGGPVRPVLTG---GSLTRPSWDPDGWVWTVDDGSGGV 89 (253)
T ss_pred ccccceEECCCCC---------eEEEEEEcCCCCEEEEEc--CCCcceeeccC---CccccccccCCCCEEEEEcCCCce
Confidence 3788999999997 555544 334455554 33323332 33 378888999997766665555566
Q ss_pred EEEe-CCCCeEE-EEeec--CCCCeeEEEEccCCCEEEE-e----cCcEEEEECC---CC--cee----EEeecCCCCeE
Q 036605 98 SEMK-SEMGEVI-REFKA--SEKPISSSAFLCEEKIFAL-A----SSEVRILSLE---NG--EEV----LKFSDDVGPLQ 159 (340)
Q Consensus 98 ~~wd-~~~~~~~-~~~~~--~~~~i~~l~~~~~~~~l~~-~----~~~i~i~d~~---~~--~~~----~~~~~~~~~v~ 159 (340)
.++. ..++... ..+.. ....|..+.++|||..++. . ++.|.+--+. .+ ..+ .........+.
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 90 RVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVT 169 (253)
T ss_pred EEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcce
Confidence 6663 3333322 12221 1227999999999998866 2 3445555432 22 111 11123346789
Q ss_pred EEEECCCCCEEEEEEcCCCeEEE
Q 036605 160 YVSASDGAKIIITAGYGEKHLQV 182 (340)
Q Consensus 160 ~~~~s~~~~~l~s~~~~d~~i~i 182 (340)
.+.|.+++..++.+...+..+..
T Consensus 170 ~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 170 DVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred eeeecCCCEEEEEeCCCCCceeE
Confidence 99999999887776665554444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.9 Score=38.25 Aligned_cols=143 Identities=14% Similarity=0.136 Sum_probs=82.0
Q ss_pred EEEEeeccccccccccCceEEEEEcCCCcEE-EEEccCCeeE-EEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 036605 25 SCLACGFVGKKRRKERGTLLLALGTSNGDIL-AVDVLTGEMK-WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKS 102 (340)
Q Consensus 25 ~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~-i~d~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~ 102 (340)
..+..++++. ++++|. .|.+. -|| .|... ..+.......+..+.|.+++..+++ +.+|.+.. ..
T Consensus 242 ~~v~~~~dG~---------~~~vg~-~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~-g~~G~l~~-S~ 307 (398)
T PLN00033 242 STVNRSPDGD---------YVAVSS-RGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLL-TRGGGLYV-SK 307 (398)
T ss_pred eeEEEcCCCC---------EEEEEC-CccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEE-eCCceEEE-ec
Confidence 3345566776 555554 44433 343 44322 1222224557899999988887765 45666543 33
Q ss_pred CCCe-----EEEEeec--CCCCeeEEEEccCCCEEEEecCcEEEEECCCCceeEEee---cCCCCeEEEEECCCCCEEEE
Q 036605 103 EMGE-----VIREFKA--SEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFS---DDVGPLQYVSASDGAKIIIT 172 (340)
Q Consensus 103 ~~~~-----~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s 172 (340)
..++ ....... ....+..+.+.+++..++++..-+.+.....|+.-.... .-......+.|.++++.+++
T Consensus 308 d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 308 GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEE
Confidence 4443 1222221 223588899999988888766655555555554433322 22356789999887776666
Q ss_pred EEcCCCeEEEE
Q 036605 173 AGYGEKHLQVW 183 (340)
Q Consensus 173 ~~~~d~~i~iw 183 (340)
+. +|.|.-|
T Consensus 388 -G~-~G~il~~ 396 (398)
T PLN00033 388 -GN-DGVLLRY 396 (398)
T ss_pred -eC-CcEEEEe
Confidence 55 6776544
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.4 Score=36.55 Aligned_cols=165 Identities=12% Similarity=0.187 Sum_probs=97.1
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC-CCCeeEEEEccCCCEEEEecCc--EEEEECCCCcee
Q 036605 72 HPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKAS-EKPISSSAFLCEEKIFALASSE--VRILSLENGEEV 148 (340)
Q Consensus 72 h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~ 148 (340)
-...+.++.|+|+.+.|++......-.++=-..|+.+.++... -.....|.+..+++++++--++ +.++.+.....+
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 3445999999999999999888877777766778888775421 2234677888888887775444 666655443221
Q ss_pred E-----Ee----ecC-CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeec-CC-Ceeeeeec-CCCC
Q 036605 149 L-----KF----SDD-VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMR-HS-PVAIDCKN-SPNG 215 (340)
Q Consensus 149 ~-----~~----~~~-~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~ 215 (340)
. ++ ..+ ......++|+|....|+.+-. -+-+.||.+................ .. -.+.++.. .+..
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE-r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE-RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEc-cCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 1 11 112 445678999999888888665 7778888773111111111110000 00 11222211 1223
Q ss_pred CCCCEEEEEeCCCcEEEEECCC
Q 036605 216 EDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 216 ~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
..+..++-+.+++.+.-.|...
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CCCcEEEEecCCceEEEEecCC
Confidence 4566666666777666666543
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.3 Score=39.82 Aligned_cols=143 Identities=18% Similarity=0.120 Sum_probs=82.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCC---CcEEEEEccCC--eeEEE-ecC--CC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSN---GDILAVDVLTG--EMKWK-STG--RH 72 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~--~~~~~-~~~--~h 72 (340)
+||+.+++....-. ....-|..-.+-|||+ +|.+|+.. ..+++++.... ...+. ... ..
T Consensus 50 ~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~---------ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~ 116 (243)
T PF07250_consen 50 EYDPNTNTFRPLTV----QTDTFCSGGAFLPDGR---------LLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS 116 (243)
T ss_pred EEecCCCcEEeccC----CCCCcccCcCCCCCCC---------EEEeCCCCccccceEEEecCCCCCCCCceECcccccC
Confidence 47888777653222 3445666677889999 88887753 35778876541 11111 000 01
Q ss_pred CCCeEEEEEecCCCEEEEEeCCC-cEEEEeCCC-CeEEEEe--ec------CCCCeeEEEEccCCCEEEEecCcEEEEEC
Q 036605 73 PGGLAGLAFAKKGRSLHVVGTNG-MASEMKSEM-GEVIREF--KA------SEKPISSSAFLCEEKIFALASSEVRILSL 142 (340)
Q Consensus 73 ~~~v~~v~~~~~~~~l~s~~~dg-~i~~wd~~~-~~~~~~~--~~------~~~~i~~l~~~~~~~~l~~~~~~i~i~d~ 142 (340)
..-=....--+||+.|+.|+... ....|.... ......+ -. ...-.-.+.+.|+|++++.+...-.|||.
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~ 196 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDY 196 (243)
T ss_pred CCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeC
Confidence 11112333457899999888774 445555422 1111111 10 11112356678999999999999889999
Q ss_pred CCCceeEEeecCCC
Q 036605 143 ENGEEVLKFSDDVG 156 (340)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (340)
.+.+.++.+..-.+
T Consensus 197 ~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 197 KTNTVVRTLPDLPG 210 (243)
T ss_pred CCCeEEeeCCCCCC
Confidence 99877777755443
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=2.6 Score=38.63 Aligned_cols=100 Identities=11% Similarity=0.079 Sum_probs=48.8
Q ss_pred EEEEEcCCC-----cEEEEEccCCeeEEEecCCCCCCe-EEEEEecCCCEEEEEeCC--CcEEEEeCCCCeEEEEeecCC
Q 036605 44 LLALGTSNG-----DILAVDVLTGEMKWKSTGRHPGGL-AGLAFAKKGRSLHVVGTN--GMASEMKSEMGEVIREFKASE 115 (340)
Q Consensus 44 ~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~ 115 (340)
++++|+.++ .+..||..+++... +..-..... .+++ .-++...+.||.+ ..+..||..+++-.. ...-.
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~ 350 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLL 350 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEE-CCCCC
Confidence 667777543 57788988765332 221011111 1222 2356666666653 457888876553221 11111
Q ss_pred CCe-eEEEEccCCCEEEEecCc-----EEEEECCCCc
Q 036605 116 KPI-SSSAFLCEEKIFALASSE-----VRILSLENGE 146 (340)
Q Consensus 116 ~~i-~~l~~~~~~~~l~~~~~~-----i~i~d~~~~~ 146 (340)
.+. ......-+|++.+.|+.+ +..||..+.+
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 111 111223356666665532 6778877653
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.12 Score=29.10 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=25.3
Q ss_pred CCeEEEEEecCCC---EEEEEeCCCcEEEEeCCC
Q 036605 74 GGLAGLAFAKKGR---SLHVVGTNGMASEMKSEM 104 (340)
Q Consensus 74 ~~v~~v~~~~~~~---~l~s~~~dg~i~~wd~~~ 104 (340)
+.|.++.|+|... +|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4789999998544 777777779999999985
|
It contains a characteristic DLL sequence motif. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.85 E-value=2.1 Score=36.26 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=55.7
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ecCcEEEEEC-CCCceeE
Q 036605 72 HPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-ASSEVRILSL-ENGEEVL 149 (340)
Q Consensus 72 h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~-~~~~~~~ 149 (340)
-.+.+..+.-+++|++++++.....+.-||.-...-...-......|..+.|.|++.+.+. -++.|+.=+. ...+...
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE-
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccc
Confidence 5578899998999998888766555668875432222222234678999999999887555 4555777662 2221111
Q ss_pred E----eecCCCCeEEEEECCCCCEEEEEEcCCCeEE
Q 036605 150 K----FSDDVGPLQYVSASDGAKIIITAGYGEKHLQ 181 (340)
Q Consensus 150 ~----~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~ 181 (340)
. +......+..++|.+++...++++ .|.+.
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg--~G~l~ 256 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGG--SGTLL 256 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEES--TT-EE
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeC--CccEE
Confidence 1 111223478899999887777644 45543
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=2.8 Score=37.16 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=76.8
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEE----eecCCCCeeEEEEccCCCEEEEecCcEEEEECCCC-c
Q 036605 72 HPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIRE----FKASEKPISSSAFLCEEKIFALASSEVRILSLENG-E 146 (340)
Q Consensus 72 h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~-~ 146 (340)
..|+|.++.|++|.+.|+.--.+..|.+++....+.... .+.....|....|+.+....+..+.-+-+|..... .
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekr 144 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKR 144 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhh
Confidence 567999999999999999999999999998754443322 23344568888998875444444444767765433 2
Q ss_pred eeEEeecCCCCeEEEEECCCCCEEEEE-EcCCCeEEEEEc
Q 036605 147 EVLKFSDDVGPLQYVSASDGAKIIITA-GYGEKHLQVWRC 185 (340)
Q Consensus 147 ~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~~d~~i~iwd~ 185 (340)
.++....|...|.-..|.++.+.++.+ +...+.+.=+.+
T Consensus 145 slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~ 184 (657)
T KOG2377|consen 145 SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHF 184 (657)
T ss_pred hhhhhhhcccCccEEEEccccceEeeeccccccccccEEE
Confidence 345556777788888888887654443 323555555555
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.8 Score=40.26 Aligned_cols=137 Identities=8% Similarity=0.009 Sum_probs=63.4
Q ss_pred EEEEEcCC-----CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC------CcEEEEeCCCCeEEEE--
Q 036605 44 LLALGTSN-----GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN------GMASEMKSEMGEVIRE-- 110 (340)
Q Consensus 44 ~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~-- 110 (340)
+++.|+.+ ..+..||..+++....-.-.+...-.+++ .-+++..+.||.+ ..+..||+.+.+-...
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 423 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP 423 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC
Confidence 67777755 35778888776533211110111111222 2245666666632 3578899876543211
Q ss_pred eecCCCCeeEEEEccCCCEEEEecC----------cEEEEECCCCceeE--EeecCCCCeEEEEECCCCCEEEEEEcC--
Q 036605 111 FKASEKPISSSAFLCEEKIFALASS----------EVRILSLENGEEVL--KFSDDVGPLQYVSASDGAKIIITAGYG-- 176 (340)
Q Consensus 111 ~~~~~~~i~~l~~~~~~~~l~~~~~----------~i~i~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~~-- 176 (340)
+...... .++ ...++.+++.|+. .+.+||..+++-.. .+.........+.+ ++..++.+|..
T Consensus 424 ~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~ 499 (534)
T PHA03098 424 LPISHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYE 499 (534)
T ss_pred CCccccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCC
Confidence 1111111 122 2234555555442 17888887764321 11111111122222 55566665542
Q ss_pred --CCeEEEEEc
Q 036605 177 --EKHLQVWRC 185 (340)
Q Consensus 177 --d~~i~iwd~ 185 (340)
.+.+.+||.
T Consensus 500 ~~~~~v~~yd~ 510 (534)
T PHA03098 500 YYINEIEVYDD 510 (534)
T ss_pred cccceeEEEeC
Confidence 246777776
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.58 E-value=2.9 Score=39.20 Aligned_cols=106 Identities=11% Similarity=0.100 Sum_probs=63.5
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEee-cCCCCeeEEEEc--cCCCEEEEec-C-cEEEEEC-----CC--
Q 036605 77 AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK-ASEKPISSSAFL--CEEKIFALAS-S-EVRILSL-----EN-- 144 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~l~~~--~~~~~l~~~~-~-~i~i~d~-----~~-- 144 (340)
.-+.-+.-++..++-+....+.+||...+.....-. .....|..+.|. |+++.+++.+ . .|.+|-- ..
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 333334434444443444678999999887543322 346688888886 6777775533 2 3666642 11
Q ss_pred --CceeEEe--ecCC-CCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 145 --GEEVLKF--SDDV-GPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 145 --~~~~~~~--~~~~-~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
...+.++ ..|. .+|.+..|.++|..++.+ ++.+.|+|-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s---GNqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS---GNQLFVFDK 155 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEe---CCEEEEECC
Confidence 1223333 3343 678999999999655543 468888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.77 Score=40.71 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=56.3
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCC-eEEEEEecC-C-----------
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGG-LAGLAFAKK-G----------- 85 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~-v~~v~~~~~-~----------- 85 (340)
.....+.+++.+|+++ +.|+..+-|.|.++|+.++..++-+++ ..+. +.-+..... .
T Consensus 305 D~~R~~~~i~~sP~~~---------laA~tDslGRV~LiD~~~~~vvrmWKG-YRdAqc~wi~~~~~~~~~~~~~~~~~~ 374 (415)
T PF14655_consen 305 DSKREGESICLSPSGR---------LAAVTDSLGRVLLIDVARGIVVRMWKG-YRDAQCGWIEVPEEGDRDRSNSNSPKS 374 (415)
T ss_pred cCCceEEEEEECCCCC---------EEEEEcCCCcEEEEECCCChhhhhhcc-CccceEEEEEeecccccccccccccCC
Confidence 3446688999999999 788877779999999999987777766 3222 111111111 0
Q ss_pred -----C-EEEEEeCCCcEEEEeCCCCeEEEEeec
Q 036605 86 -----R-SLHVVGTNGMASEMKSEMGEVIREFKA 113 (340)
Q Consensus 86 -----~-~l~s~~~dg~i~~wd~~~~~~~~~~~~ 113 (340)
. +++-+-.-|.|.+|.+++|..+..+..
T Consensus 375 ~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 375 SSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 1 223345568888888888877766654
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.43 E-value=3.8 Score=38.44 Aligned_cols=140 Identities=15% Similarity=0.124 Sum_probs=70.3
Q ss_pred EEEEEcCC------CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC------CcEEEEeCCCCeEEEEe
Q 036605 44 LLALGTSN------GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN------GMASEMKSEMGEVIREF 111 (340)
Q Consensus 44 ~l~~g~~d------g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~ 111 (340)
++++|+.+ ..+..||..++.......-.+...-.+++.. ++...++||.| ..+..||..+.+-.. +
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~ 364 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-V 364 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-c
Confidence 77777776 3677899888754332221122233455554 45677778887 356788887766221 1
Q ss_pred ecCCCCeeEEEEc-cCCCEEEEecCc-------EEEEECCCCceeEEeecCCCCeEEEEE-CCCCCEEEEEEcC-----C
Q 036605 112 KASEKPISSSAFL-CEEKIFALASSE-------VRILSLENGEEVLKFSDDVGPLQYVSA-SDGAKIIITAGYG-----E 177 (340)
Q Consensus 112 ~~~~~~i~~l~~~-~~~~~l~~~~~~-------i~i~d~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~~-----d 177 (340)
..-..+-..+... -+|.+.++|+.+ +-.||..+.+--.. ............ .-+|...+++|.. -
T Consensus 365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCL 443 (571)
T ss_pred CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECCEEEEEcCcCCCcccc
Confidence 1111111111221 245566666655 78888776542211 111111122111 2245555565531 1
Q ss_pred CeEEEEEcc
Q 036605 178 KHLQVWRCD 186 (340)
Q Consensus 178 ~~i~iwd~~ 186 (340)
..+..||..
T Consensus 444 ~sve~YDP~ 452 (571)
T KOG4441|consen 444 NSVECYDPE 452 (571)
T ss_pred ceEEEEcCC
Confidence 356777763
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.6 Score=41.03 Aligned_cols=150 Identities=12% Similarity=0.092 Sum_probs=76.9
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEec---CCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKST---GRHPGGLAGLAFAKKGRSLHVVGTNGMASE 99 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~ 99 (340)
++-.+.|+.+.. |++-..+|++++|++.... ..... ......|..+.|..+|-.+. ..+|.+.+
T Consensus 85 ~lI~mgWs~~ee----------LI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GVavl--t~~g~v~~ 151 (829)
T KOG2280|consen 85 ELIGMGWSDDEE----------LICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGVAVL--TVSGQVIL 151 (829)
T ss_pred CeeeecccCCce----------EEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCceEEE--ecCCcEEE
Confidence 777899998888 7777899999999975432 22211 11223454444444443333 34455554
Q ss_pred EeCCCCeEEEEeec---CCCCeeEEEEccCCC---EEEEecCc--EEEEECCCCc-eeEEeecCCCCeEEEEECCCCCEE
Q 036605 100 MKSEMGEVIREFKA---SEKPISSSAFLCEEK---IFALASSE--VRILSLENGE-EVLKFSDDVGPLQYVSASDGAKII 170 (340)
Q Consensus 100 wd~~~~~~~~~~~~---~~~~i~~l~~~~~~~---~l~~~~~~--i~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l 170 (340)
.+-.......++.. ...+-+|-...+++. .++-.+.. ..++...... ....+....+.+..+..||+.++|
T Consensus 152 i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~l 231 (829)
T KOG2280|consen 152 INGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFL 231 (829)
T ss_pred EcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceE
Confidence 43222212222221 111223333333322 12212211 1222222211 122333334677889999999998
Q ss_pred EEEEcCCCeEEEEEcc
Q 036605 171 ITAGYGEKHLQVWRCD 186 (340)
Q Consensus 171 ~s~~~~d~~i~iwd~~ 186 (340)
+.-.. .|.|.+-+.+
T Consensus 232 aLyt~-~G~i~~vs~D 246 (829)
T KOG2280|consen 232 ALYTE-TGKIWVVSID 246 (829)
T ss_pred EEEec-CCcEEEEecc
Confidence 88666 8999888874
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.17 Score=28.54 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=26.6
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT 61 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~ 61 (340)
+.|.++.|||... ..++|+..-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~------~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPG------GNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCC------cccEEEEEccCCeEEEEEccc
Confidence 3689999997532 113899999999999999885
|
It contains a characteristic DLL sequence motif. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.17 E-value=2.1 Score=38.44 Aligned_cols=140 Identities=11% Similarity=0.068 Sum_probs=87.7
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCC-------EEEEEeCCCcEEEEeCCCCe-EEE--Eee-
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGR-------SLHVVGTNGMASEMKSEMGE-VIR--EFK- 112 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~-------~l~s~~~dg~i~~wd~~~~~-~~~--~~~- 112 (340)
++..|.....++-.|++.|+.+-.+.- |.. | -+.|.|+.+ .-+.|-.+..|.-.|++-.. .+. .++
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~-~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKd 558 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDL-KDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKD 558 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeec-CCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehh
Confidence 444566667888889999998888875 543 3 567777432 22334555566666765332 111 121
Q ss_pred -cCCCCeeEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCC
Q 036605 113 -ASEKPISSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISS 189 (340)
Q Consensus 113 -~~~~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~ 189 (340)
..+...++..-..+| +++++ .++|++||--.......+++....|..+..+.+|+++++.+. .++-+-|++...
T Consensus 559 Y~tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~ik~ 635 (776)
T COG5167 559 YKTKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVPIKY 635 (776)
T ss_pred ccccccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEeccccc
Confidence 122234444444555 44443 456999995444333455666778999999999999998665 788888885433
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=94.06 E-value=3.9 Score=35.99 Aligned_cols=106 Identities=17% Similarity=0.278 Sum_probs=68.0
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC-CCeeEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRH-PGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASE-KPISSS 121 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~i~~l 121 (340)
.++++..+|.|.-+|..++..++...... ...+.+-.+..+|+ ++.++.+|.+..+|..+|+.+....... -.+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 37777899999999999998777655311 12333333443565 7778999999999999999888876555 112222
Q ss_pred EEccCCCEEEE-ecCcEEEEECCCCceeEE
Q 036605 122 AFLCEEKIFAL-ASSEVRILSLENGEEVLK 150 (340)
Q Consensus 122 ~~~~~~~~l~~-~~~~i~i~d~~~~~~~~~ 150 (340)
.+-.++..++. .++.+...|..+++..-.
T Consensus 149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 149 PVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred cEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 23334444444 345577777776765543
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.55 Score=37.85 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=24.2
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIR 109 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 109 (340)
+..++.+|++...+|.+++||+.+++.+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~ 46 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVL 46 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence 34568899999999999999999887643
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=3.9 Score=35.44 Aligned_cols=152 Identities=12% Similarity=0.026 Sum_probs=78.1
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEE-eCCCCeEEEEe-ecCCCCeeEEEEccCCCEEEEecCcEEEE-ECCCCceeE
Q 036605 73 PGGLAGLAFAKKGRSLHVVGTNGMASEM-KSEMGEVIREF-KASEKPISSSAFLCEEKIFALASSEVRIL-SLENGEEVL 149 (340)
Q Consensus 73 ~~~v~~v~~~~~~~~l~s~~~dg~i~~w-d~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~~i~i~-d~~~~~~~~ 149 (340)
.+.+.++.+.+++..+++ +..|.+..- + ..++.-... ......++++.+.++++.++++.+-..+. ....+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 457889999988766554 555655432 2 222222222 23345788999999998877755444344 234443222
Q ss_pred Eeec----CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEe
Q 036605 150 KFSD----DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVA 225 (340)
Q Consensus 150 ~~~~----~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s 225 (340)
.... ....+..+.+.+++..+++ +. +|.+.. .. ..++.-.........+.....+ .+ ..+ ...+.++
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~-~G~v~~-S~--d~G~tW~~~~~~~~~~~~~~~~--~~-~~~-~~~~~~G 320 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAG-GG-NGTLLV-SK--DGGKTWEKDPVGEEVPSNFYKI--VF-LDP-EKGFVLG 320 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEE-cC-CCeEEE-eC--CCCCCCeECCcCCCCCcceEEE--EE-eCC-CceEEEC
Confidence 2211 1234678899988775555 55 666543 32 2222211111000111122222 22 222 3456677
Q ss_pred CCCcEEEEEC
Q 036605 226 ESGVAYSWDL 235 (340)
Q Consensus 226 ~dg~i~vwd~ 235 (340)
..|.|.-|+-
T Consensus 321 ~~G~il~~~~ 330 (334)
T PRK13684 321 QRGVLLRYVG 330 (334)
T ss_pred CCceEEEecC
Confidence 7888877764
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.77 E-value=3.3 Score=34.16 Aligned_cols=110 Identities=14% Similarity=0.093 Sum_probs=79.8
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC-cEEEEECCCCceeEEee-
Q 036605 75 GLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS-EVRILSLENGEEVLKFS- 152 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-~i~i~d~~~~~~~~~~~- 152 (340)
.-..++-.|||..-+++...+.|--.|..+|+....--+.......|...|||..-++-.+ .|.-+|-++.+. .+|.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~ev-t~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEV-TRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccce-EEeec
Confidence 4567788899999999999999999999999977665455566788999999988877555 477777766643 3332
Q ss_pred ---cCCCCeEEEEECCCCCEEEEEEcC--------CCeEEEEEc
Q 036605 153 ---DDVGPLQYVSASDGAKIIITAGYG--------EKHLQVWRC 185 (340)
Q Consensus 153 ---~~~~~v~~~~~s~~~~~l~s~~~~--------d~~i~iwd~ 185 (340)
.-........|.+.|..-+++..+ .+.|++|+.
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa 185 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA 185 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeecc
Confidence 123557788999999877775431 245666665
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.77 E-value=3 Score=36.10 Aligned_cols=99 Identities=23% Similarity=0.240 Sum_probs=56.6
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee---EEEec---CCCCCCeEEEEEecC---CCEEEEEeC
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM---KWKST---GRHPGGLAGLAFAKK---GRSLHVVGT 93 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~---~~h~~~v~~v~~~~~---~~~l~s~~~ 93 (340)
..+.|+|.|+++ + +++...|.|++++ ..+.. +..+. .........++++|+ ..+|+....
T Consensus 3 ~P~~~a~~pdG~---------l-~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLPDGR---------L-LVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEETTSC---------E-EEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeCCCc---------E-EEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 357899999999 5 5556799999999 45543 22221 124557899999994 345554433
Q ss_pred C---------CcEEEEeCCCC-------eEEE-Eeec---CCCCeeEEEEccCCCEEEE
Q 036605 94 N---------GMASEMKSEMG-------EVIR-EFKA---SEKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 94 d---------g~i~~wd~~~~-------~~~~-~~~~---~~~~i~~l~~~~~~~~l~~ 132 (340)
. ..|.-|....+ +.+. .+.. .......|.|.|||.+.++
T Consensus 72 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs 130 (331)
T PF07995_consen 72 NADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVS 130 (331)
T ss_dssp EE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEE
T ss_pred cccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEE
Confidence 1 24555544433 1111 1222 2334567999999976665
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.70 E-value=4 Score=40.96 Aligned_cols=137 Identities=12% Similarity=0.181 Sum_probs=83.1
Q ss_pred EEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEE--------ecCCCEEEEEeCCCcEEEEeCCC----CeE---E--E
Q 036605 47 LGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAF--------AKKGRSLHVVGTNGMASEMKSEM----GEV---I--R 109 (340)
Q Consensus 47 ~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~--------~~~~~~l~s~~~dg~i~~wd~~~----~~~---~--~ 109 (340)
--+.|..+.+|+.+++.....+.+ -...|..|.. .|.=++|+..+.--.|.++-+.- +.. . .
T Consensus 94 WiTiDn~L~lWny~~~~e~~~~d~-~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDNELAEYDG-LSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EEEeCCeEEEEEcCCCCccccccc-hhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence 345688999999999776666666 5555666543 23334444444444555553321 111 0 1
Q ss_pred EeecCCCCeeEEEEccCCCEEEEecCcEEEEEC----CCC---c-----------------eeEEee-cCCCCeEEEEEC
Q 036605 110 EFKASEKPISSSAFLCEEKIFALASSEVRILSL----ENG---E-----------------EVLKFS-DDVGPLQYVSAS 164 (340)
Q Consensus 110 ~~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~----~~~---~-----------------~~~~~~-~~~~~v~~~~~s 164 (340)
.+......|.++....+|+++++|... .+|.+ ..+ + .+..+. .+..+|..+...
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 122234567888888899998885443 33332 221 0 011223 456789999998
Q ss_pred CCCCEEEEEEcCCCeEEEEEcc
Q 036605 165 DGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 165 ~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
..-..+++-+. .+.|.+|++.
T Consensus 252 ~SR~IlY~lse-k~~v~~Y~i~ 272 (1311)
T KOG1900|consen 252 NSRNILYVLSE-KGTVSAYDIG 272 (1311)
T ss_pred cccceeeeecc-CceEEEEEcc
Confidence 88777888666 8999999994
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.70 E-value=6.6 Score=37.82 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=54.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc---------CCe--eEEEe--------cCCCCCCeEEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL---------TGE--MKWKS--------TGRHPGGLAGL 79 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~---------~~~--~~~~~--------~~~h~~~v~~v 79 (340)
...-.|..+..+|+|+ +||..+..|.+.+.=.. .|+ ..++. ...+...|..+
T Consensus 82 ~~~f~v~~i~~n~~g~---------~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv 152 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGS---------LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQV 152 (717)
T ss_pred CCceeEEEEEECCCCC---------EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEE
Confidence 3446788999999999 88888887654442211 121 12221 11245688999
Q ss_pred EEecC---CCEEEEEeCCCcEEEEeCCCCe
Q 036605 80 AFAKK---GRSLHVVGTNGMASEMKSEMGE 106 (340)
Q Consensus 80 ~~~~~---~~~l~s~~~dg~i~~wd~~~~~ 106 (340)
.|+|. +..|+.-..|+.+++||+....
T Consensus 153 ~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 153 RWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 99996 4788888999999999997543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.082 Score=50.02 Aligned_cols=83 Identities=12% Similarity=0.172 Sum_probs=54.3
Q ss_pred CCeEEEEeecc---ccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE-----------EecCCCE
Q 036605 22 VSYSCLACGFV---GKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA-----------FAKKGRS 87 (340)
Q Consensus 22 ~~v~~l~~sp~---~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~-----------~~~~~~~ 87 (340)
..+.-+.|.|- .- ++..+..+++|++.+..+... ..+.+ |...+..++ .+|||..
T Consensus 181 s~~~~V~wcp~~~~~~---------~ic~~~~~~~i~lL~~~ra~~-~l~rs-Hs~~~~d~a~~~~g~~~l~~lSpDGtv 249 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKV---------YICYGLKGGEIRLLNINRALR-SLFRS-HSQRVTDMAFFAEGVLKLASLSPDGTV 249 (1283)
T ss_pred CCcceeeecccccccc---------eeeeccCCCceeEeeechHHH-HHHHh-cCCCcccHHHHhhchhhheeeCCCCcE
Confidence 34456667654 34 788888999999877655432 23333 655554443 5899999
Q ss_pred EEEEeCCCcEEEEeCC-CC----eEEEEeecCC
Q 036605 88 LHVVGTNGMASEMKSE-MG----EVIREFKASE 115 (340)
Q Consensus 88 l~s~~~dg~i~~wd~~-~~----~~~~~~~~~~ 115 (340)
++.+..||.+..|.+. +| ..++.++.|.
T Consensus 250 ~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 250 FAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred EEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 9999999998888653 12 2345566665
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.3 Score=39.25 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=54.4
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeE-EEEccC-----------------CCEEEE-
Q 036605 72 HPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS-SAFLCE-----------------EKIFAL- 132 (340)
Q Consensus 72 h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~-l~~~~~-----------------~~~l~~- 132 (340)
....+.+++.+|++++.++.+.-|.|.++|+.++..++.|++-.+.-.. +..... ..+|+.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 3346788999999888887766699999999999988888876543221 111111 112322
Q ss_pred ecCc--EEEEECCCCceeEEee
Q 036605 133 ASSE--VRILSLENGEEVLKFS 152 (340)
Q Consensus 133 ~~~~--i~i~d~~~~~~~~~~~ 152 (340)
+-+. |-||.++.|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 3333 8899999888776664
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.54 E-value=3.1 Score=39.92 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=19.8
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEE
Q 036605 75 GLAGLAFAKKGRSLHVVGTNGMASE 99 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~dg~i~~ 99 (340)
.|..|.++|+|..|+..|..|.+.+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE
Confidence 5788889999999998888765444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.46 Score=26.10 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=23.4
Q ss_pred eecCCCCeEEEEECCCCCEEEEEEcCC--CeEEEE
Q 036605 151 FSDDVGPLQYVSASDGAKIIITAGYGE--KHLQVW 183 (340)
Q Consensus 151 ~~~~~~~v~~~~~s~~~~~l~s~~~~d--~~i~iw 183 (340)
+...........|+|||++|+.++..+ |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334456678889999999999888766 666666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.89 Score=36.63 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=39.8
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEe-------cC------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKS-------TG------RHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSE 103 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~-------~~------~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~ 103 (340)
+|++-+.+|.+++||+.+++.+..- .. .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 24 ~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 24 YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 8999999999999999998754322 10 1334566677776666665544 3566677654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.02 E-value=4.5 Score=33.44 Aligned_cols=187 Identities=11% Similarity=0.075 Sum_probs=113.1
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKS 102 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~ 102 (340)
.-..++-.|||. .-+++...|.|--.|..+|+...--.+ ....-..|..-|||..-++-+.. .|.-+|.
T Consensus 63 ap~dvapapdG~---------VWft~qg~gaiGhLdP~tGev~~ypLg-~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dp 131 (353)
T COG4257 63 APFDVAPAPDGA---------VWFTAQGTGAIGHLDPATGEVETYPLG-SGASPHGIVVGPDGSAWITDTGL-AIGRLDP 131 (353)
T ss_pred CccccccCCCCc---------eEEecCccccceecCCCCCceEEEecC-CCCCCceEEECCCCCeeEecCcc-eeEEecC
Confidence 345567778887 777888888888888888875543333 44455677788888876653333 6777777
Q ss_pred CCCeEEEE---eecCCCCeeEEEEccCCCEEEEecCc-----------EEEEECCCCceeEEeecCCCCeEEEEECCCCC
Q 036605 103 EMGEVIRE---FKASEKPISSSAFLCEEKIFALASSE-----------VRILSLENGEEVLKFSDDVGPLQYVSASDGAK 168 (340)
Q Consensus 103 ~~~~~~~~---~~~~~~~i~~l~~~~~~~~l~~~~~~-----------i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 168 (340)
++.+...- .+..........|.+.|++-+++..- |++|+.-.| .....|+..|+|.
T Consensus 132 kt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG----------~gpyGi~atpdGs 201 (353)
T COG4257 132 KTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG----------GGPYGICATPDGS 201 (353)
T ss_pred cccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC----------CCCcceEECCCCc
Confidence 66654321 12234456788899999988874422 455544322 3456788899998
Q ss_pred EEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 169 IIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 169 ~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.-++.-. ++.|...|- ..+ ....+. ............|.++-+..-++-...+.++-||-.+
T Consensus 202 vwyasla-gnaiaridp--~~~-~aev~p---~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 202 VWYASLA-GNAIARIDP--FAG-HAEVVP---QPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred EEEEecc-ccceEEccc--ccC-Ccceec---CCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 7777555 667766664 222 111111 1111122233344466777777766777777777655
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.91 E-value=1.4 Score=39.42 Aligned_cols=131 Identities=9% Similarity=0.030 Sum_probs=78.1
Q ss_pred cCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC-CeeEEEecCCCCCCeEEEEE
Q 036605 3 STNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT-GEMKWKSTGRHPGGLAGLAF 81 (340)
Q Consensus 3 d~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~h~~~v~~v~~ 81 (340)
|.+.|+++.+|. -|.. | -+.|.|..+-.+. ....-++|-++..|.-.|.+- |..+.... ....++--.|
T Consensus 496 DIErGkvveeW~----~~dd-v-vVqy~p~~kf~qm--t~eqtlvGlS~~svFrIDPR~~gNKi~v~e--sKdY~tKn~F 565 (776)
T COG5167 496 DIERGKVVEEWD----LKDD-V-VVQYNPYFKFQQM--TDEQTLVGLSDYSVFRIDPRARGNKIKVVE--SKDYKTKNKF 565 (776)
T ss_pred ecccceeeeEee----cCCc-c-eeecCCchhHHhc--CccceEEeecccceEEecccccCCceeeee--ehhccccccc
Confidence 677888888888 3333 3 5778776430000 001234455565666556543 32221111 1122222223
Q ss_pred e----cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ecCcEEEEECC
Q 036605 82 A----KKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-ASSEVRILSLE 143 (340)
Q Consensus 82 ~----~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~~ 143 (340)
+ ....+++.++..|.|++||--.-+...-+.+-...|-.+.++.+|+++++ +-..+.+.|+.
T Consensus 566 ss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 566 SSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 2 24558999999999999996544444446666778899999999998855 65568888864
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=92.79 E-value=7.7 Score=35.55 Aligned_cols=182 Identities=16% Similarity=0.166 Sum_probs=83.9
Q ss_pred CCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCC---eeEEEEccC
Q 036605 50 SNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKP---ISSSAFLCE 126 (340)
Q Consensus 50 ~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~---i~~l~~~~~ 126 (340)
..+.+.++|. .|...+.+.. .......+...++|.+++..+ ..+..+|+. |+.+..+...... -+.+...|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~-~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPL-DSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-G-GGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECC-CccEEEEEcc-CccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCC
Confidence 4567778884 4666666643 111111156677888776554 788899985 6766665543322 467788899
Q ss_pred CCEEEEec--------------Cc-EEEEECCCCceeEEee--cCC-------------------------CCeEEEEEC
Q 036605 127 EKIFALAS--------------SE-VRILSLENGEEVLKFS--DDV-------------------------GPLQYVSAS 164 (340)
Q Consensus 127 ~~~l~~~~--------------~~-i~i~d~~~~~~~~~~~--~~~-------------------------~~v~~~~~s 164 (340)
|++|+.+. .+ |..+| .+|+.+..+. .|- ..+.++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 99887644 11 66666 6666554431 110 236888998
Q ss_pred CCCCEEEEEEcCCCeEEEEEccCCCCCccCCce-------------eee-cCCCeeeee-ecCCCCCCCCEEEEEeCCC-
Q 036605 165 DGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA-------------LSM-RHSPVAIDC-KNSPNGEDGTVILAVAESG- 228 (340)
Q Consensus 165 ~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~-~~~~~~~~~-~~~~~~~~~~~l~~~s~dg- 228 (340)
+....|+.++..-..|...|. .+++..-.+. +.. ........+ ...+.-.-|++-+.-..+|
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~--~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~ 357 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDY--RTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGP 357 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE---TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS-
T ss_pred CCCCeEEEEcCcceEEEEEEC--CCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCC
Confidence 854555555664556666664 3332211111 000 000000000 0111124466777777888
Q ss_pred --cEEEEECCCCC
Q 036605 229 --VAYSWDLKTVS 239 (340)
Q Consensus 229 --~i~vwd~~~~~ 239 (340)
.|.+||=....
T Consensus 358 ~~~l~vFDNg~~r 370 (477)
T PF05935_consen 358 QGNLLVFDNGNGR 370 (477)
T ss_dssp --SEEEEE--TTG
T ss_pred eEEEEEEECCCCC
Confidence 99999876644
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.50 E-value=4.5 Score=32.14 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=32.7
Q ss_pred EEEecCcEEEEECCC--CceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 130 FALASSEVRILSLEN--GEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 130 l~~~~~~i~i~d~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
+++++..|.+|++.. .+.+..|.. -+.|..+.++..|.|+++-=.
T Consensus 33 va~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 33 VAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred EEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEe
Confidence 345666699999883 344466653 378899999999999998543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.36 E-value=5.5 Score=32.88 Aligned_cols=151 Identities=14% Similarity=0.037 Sum_probs=84.4
Q ss_pred CCCCCe-EEEEeeccccccccccCceEEEEEcCCC--cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEE-eCC
Q 036605 19 EPVVSY-SCLACGFVGKKRRKERGTLLLALGTSNG--DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVV-GTN 94 (340)
Q Consensus 19 ~~~~~v-~~l~~sp~~~~~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d 94 (340)
|..... -.+.|..++. ++-+.+.-| .|+.+|+.+|+......-...-.--.++.. +..|+-- =.+
T Consensus 41 Hd~~aFTQGL~~~~~g~---------LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~ 109 (264)
T PF05096_consen 41 HDPTAFTQGLEFLDDGT---------LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKE 109 (264)
T ss_dssp --TT-EEEEEEEEETTE---------EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSS
T ss_pred CCCcccCccEEecCCCE---------EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecC
Confidence 333343 3466767777 666666555 799999999987655442122222344544 3344443 467
Q ss_pred CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecC--C---CCeEEEEECCCC
Q 036605 95 GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDD--V---GPLQYVSASDGA 167 (340)
Q Consensus 95 g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~--~---~~v~~~~~s~~~ 167 (340)
+...+||..+.+.+.++.-. ..-..++ .++..|+..+++ ++++|..+.+....+.-. . ..++.+.|- +|
T Consensus 110 ~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G 185 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG 185 (264)
T ss_dssp SEEEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT
T ss_pred CeEEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC
Confidence 89999999999988887643 3446666 556666665554 999999887766655321 1 345556664 33
Q ss_pred CEEEEEEcCCCeEEEEEc
Q 036605 168 KIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~ 185 (340)
+|.+--.....|...|.
T Consensus 186 -~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 186 -KIYANVWQTDRIVRIDP 202 (264)
T ss_dssp -EEEEEETTSSEEEEEET
T ss_pred -EEEEEeCCCCeEEEEeC
Confidence 44443333445555454
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.33 E-value=5.6 Score=32.89 Aligned_cols=108 Identities=10% Similarity=0.119 Sum_probs=67.0
Q ss_pred CeEEEEEecCCCEEEEEe--C-CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEE-ECCCCcee
Q 036605 75 GLAGLAFAKKGRSLHVVG--T-NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRIL-SLENGEEV 148 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~--~-dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~-d~~~~~~~ 148 (340)
.+...+++++++.++... . ...+.++... .....+. ....+....|++++...+..++. .+++ +...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999877765 2 2445555443 3222322 22367888899998877765444 4444 33333222
Q ss_pred -EEeecC--CCCeEEEEECCCCCEEEEEEc--CCCeEEEEEc
Q 036605 149 -LKFSDD--VGPLQYVSASDGAKIIITAGY--GEKHLQVWRC 185 (340)
Q Consensus 149 -~~~~~~--~~~v~~~~~s~~~~~l~s~~~--~d~~i~iwd~ 185 (340)
..+... ...|..+.+||||..++.... .++.|.|--+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 222211 128999999999998877663 2567777665
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.1 Score=34.67 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=23.6
Q ss_pred CeEEEEEecCC------CEEEEEeCCCcEEEEeCCC
Q 036605 75 GLAGLAFAKKG------RSLHVVGTNGMASEMKSEM 104 (340)
Q Consensus 75 ~v~~v~~~~~~------~~l~s~~~dg~i~~wd~~~ 104 (340)
.|..++|||.| ..|++...++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68889999854 3678888899999997664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=91.69 E-value=3.7 Score=34.43 Aligned_cols=89 Identities=17% Similarity=0.278 Sum_probs=52.8
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEc------CCCcEEEEEccCCeeEEEecC----C
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGT------SNGDILAVDVLTGEMKWKSTG----R 71 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~------~dg~i~i~d~~~~~~~~~~~~----~ 71 (340)
||+.+.+... ...+..+.|+.|.|..+.+ +++.|. ....+..||..+.... .+.. .
T Consensus 21 yd~~~~qW~~----~g~~i~G~V~~l~~~~~~~---------Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ 86 (281)
T PF12768_consen 21 YDTDNSQWSS----PGNGISGTVTDLQWASNNQ---------LLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNS 86 (281)
T ss_pred EECCCCEeec----CCCCceEEEEEEEEecCCE---------EEEEEeeEECCCCceeEEEEecCCCeee-ecCCccccc
Confidence 5555554332 2235778999999986667 777764 4567888998877532 3332 1
Q ss_pred CCCCeEEEEEec-CCCEEEEEe--C--CCcEEEEeCCC
Q 036605 72 HPGGLAGLAFAK-KGRSLHVVG--T--NGMASEMKSEM 104 (340)
Q Consensus 72 h~~~v~~v~~~~-~~~~l~s~~--~--dg~i~~wd~~~ 104 (340)
-+++|..+.+.. |+..++.++ . +..|..||-..
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 247888887743 444444332 2 23456665433
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=91.69 E-value=1.7 Score=29.29 Aligned_cols=42 Identities=12% Similarity=-0.018 Sum_probs=28.5
Q ss_pred EeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEe
Q 036605 91 VGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALA 133 (340)
Q Consensus 91 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~ 133 (340)
+..+|.+..||+.+++....+.+ -.-.+.|++++|+.+++.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence 45568899999999876544443 3356899999999987663
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.34 Score=46.13 Aligned_cols=106 Identities=12% Similarity=0.104 Sum_probs=56.5
Q ss_pred CCcEEEEEcc--CCeeEEEec----CCCCCCeEEEEEec---CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEE
Q 036605 51 NGDILAVDVL--TGEMKWKST----GRHPGGLAGLAFAK---KGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSS 121 (340)
Q Consensus 51 dg~i~i~d~~--~~~~~~~~~----~~h~~~v~~v~~~~---~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l 121 (340)
-|.+.+|++. .|++...+. ......+.-|.|.| +..++..+..++.|++..+..... ..+.+|...+..+
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 3677888765 344332221 11223344455544 333444455567777766554332 2344566555555
Q ss_pred EEccCCCEEEEecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccC
Q 036605 122 AFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDI 187 (340)
Q Consensus 122 ~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~ 187 (340)
++-..|-+++.+ ++|||+.++.... ||.+++|.+-+
T Consensus 231 a~~~~g~~~l~~-----------------------------lSpDGtv~a~a~~-dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 231 AFFAEGVLKLAS-----------------------------LSPDGTVFAWAIS-DGSVGFYQIYI 266 (1283)
T ss_pred HHHhhchhhhee-----------------------------eCCCCcEEEEeec-CCccceeeeee
Confidence 544433222111 6788887777666 88888887643
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=91.63 E-value=1.4 Score=24.41 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=27.9
Q ss_pred cCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCeeEEEE
Q 036605 83 KKGRSLHVVG-TNGMASEMKSEMGEVIREFKASEKPISSSAF 123 (340)
Q Consensus 83 ~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~ 123 (340)
|+++.|+++. .++.|.++|..+++.+..+..... ...++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence 5677777765 468999999999888877765432 334444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.55 E-value=11 Score=34.60 Aligned_cols=97 Identities=7% Similarity=-0.030 Sum_probs=47.3
Q ss_pred EEEEEcCC--CcEEEEEccCCeeEEEecCCCCCCe--EEEEEecCCCEEEEEeCC---CcEEEEeCCCCeEEEE--eecC
Q 036605 44 LLALGTSN--GDILAVDVLTGEMKWKSTGRHPGGL--AGLAFAKKGRSLHVVGTN---GMASEMKSEMGEVIRE--FKAS 114 (340)
Q Consensus 44 ~l~~g~~d--g~i~i~d~~~~~~~~~~~~~h~~~v--~~v~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~--~~~~ 114 (340)
+.++|+.+ ..+..||..+++... +.. -..+. .+++ .-+|+..+.||.+ ..+..||+.+..-... +...
T Consensus 321 iYviGG~~~~~sve~ydp~~n~W~~-~~~-l~~~r~~~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~ 397 (480)
T PHA02790 321 LYVVGGLPNPTSVERWFHGDAAWVN-MPS-LLKPRCNPAVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP 397 (480)
T ss_pred EEEECCcCCCCceEEEECCCCeEEE-CCC-CCCCCcccEEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence 66677653 457888877664322 221 11111 1222 2256666666654 3467888876542211 1111
Q ss_pred CCCeeEEEEccCCCEEEEecCcEEEEECCCCc
Q 036605 115 EKPISSSAFLCEEKIFALASSEVRILSLENGE 146 (340)
Q Consensus 115 ~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~ 146 (340)
... .++ ..-++++. +.++.+.+||..+.+
T Consensus 398 r~~-~~~-~~~~~~IY-v~GG~~e~ydp~~~~ 426 (480)
T PHA02790 398 HYK-SCA-LVFGRRLF-LVGRNAEFYCESSNT 426 (480)
T ss_pred ccc-ceE-EEECCEEE-EECCceEEecCCCCc
Confidence 111 122 22344444 444567788887664
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=91.40 E-value=15 Score=36.03 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=70.9
Q ss_pred CCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCeE----EEEee-cCC----------CCeeEEEEccCCCEEEEecCc-
Q 036605 74 GGLAGLAFAK-KGRSLHVVGTNGMASEMKSEMGEV----IREFK-ASE----------KPISSSAFLCEEKIFALASSE- 136 (340)
Q Consensus 74 ~~v~~v~~~~-~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~-~~~----------~~i~~l~~~~~~~~l~~~~~~- 136 (340)
.+..+++|+| +...|+..+..|...||++..... ...+. ... ..-..+.|.++...|+++++.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~ 225 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK 225 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence 3677899998 456899999999999999921111 01111 111 122377888888888777776
Q ss_pred EEEEECCCCceeEEe--ecCCCCeEEEEECCC--CCEEEEEEcCCCeEEEEEcc
Q 036605 137 VRILSLENGEEVLKF--SDDVGPLQYVSASDG--AKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 137 i~i~d~~~~~~~~~~--~~~~~~v~~~~~s~~--~~~l~s~~~~d~~i~iwd~~ 186 (340)
+.++|+.+......+ ......|..+.-++. +..|+. . ...|...++.
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--T-s~eiiw~~~~ 276 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--T-SKEIIWLDVK 276 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--e-cCeEEEEEcc
Confidence 999999987553212 223467888888877 322322 2 4577777774
|
These proteins are found in fungi. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.37 Score=47.04 Aligned_cols=99 Identities=11% Similarity=0.077 Sum_probs=70.4
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE-EecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW-KSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMK 101 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd 101 (340)
-..|+.|.|.-- ...++...|+.|++..+....... .+. .....++++|+|.|+.++.|-..|++.-|.
T Consensus 157 f~~~~~wnP~vp--------~n~av~l~dlsl~V~~~~~~~~~v~s~p--~t~~~Tav~WSprGKQl~iG~nnGt~vQy~ 226 (1405)
T KOG3630|consen 157 FQLKNVWNPLVP--------LNSAVDLSDLSLRVKSTKQLAQNVTSFP--VTNSQTAVLWSPRGKQLFIGRNNGTEVQYE 226 (1405)
T ss_pred ccccccccCCcc--------chhhhhccccchhhhhhhhhhhhhcccC--cccceeeEEeccccceeeEecCCCeEEEee
Confidence 457888888752 147778889999988765433221 222 456789999999999999999999999987
Q ss_pred CCCCeEEEEeecC----CCCeeEEEEccCCCEEEE
Q 036605 102 SEMGEVIREFKAS----EKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 102 ~~~~~~~~~~~~~----~~~i~~l~~~~~~~~l~~ 132 (340)
.. ++.+..+.+. ...|.+|.|-....++++
T Consensus 227 P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 227 PS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 53 4444333321 357889999888777766
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.26 E-value=14 Score=35.16 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=55.7
Q ss_pred CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEE----eecCCCCeeEEEEccCC
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIRE----FKASEKPISSSAFLCEE 127 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~~i~~l~~~~~~ 127 (340)
-.|+||+.. |+.+.++.-.|. .+..+.|+.+. .|+....+|.+.+|++.. +.+.. +......|..+.+..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~-~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHG-ELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCC-CeeeecccCCc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence 358888864 555555554244 88899999654 666779999999999763 32222 12223345556666678
Q ss_pred CEEEEecCcEEEEE
Q 036605 128 KIFALASSEVRILS 141 (340)
Q Consensus 128 ~~l~~~~~~i~i~d 141 (340)
-.+.+.++++.+..
T Consensus 140 Vavlt~~g~v~~i~ 153 (829)
T KOG2280|consen 140 VAVLTVSGQVILIN 153 (829)
T ss_pred eEEEecCCcEEEEc
Confidence 77777888855443
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.92 E-value=3.8 Score=40.59 Aligned_cols=109 Identities=10% Similarity=-0.044 Sum_probs=62.2
Q ss_pred CeEEEEEecCCCEEEE--EeCCCcEEEEeCCCCeEEE-----Eeec------CCCCeeEEEEccCCCEE---EEecCcEE
Q 036605 75 GLAGLAFAKKGRSLHV--VGTNGMASEMKSEMGEVIR-----EFKA------SEKPISSSAFLCEEKIF---ALASSEVR 138 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s--~~~dg~i~~wd~~~~~~~~-----~~~~------~~~~i~~l~~~~~~~~l---~~~~~~i~ 138 (340)
.|..+...+|+...++ .+.+-.|..||++.-..-. -+.- ...-..++.|.|.-..- ...+..|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4445555566654333 3444578899987543211 0111 11223566777754332 22555566
Q ss_pred EEECCCCcee-EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 139 ILSLENGEEV-LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 139 i~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
+..+...... ..+ ......++++|+|-|+.++.+-. .|++.-|..
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~n-nGt~vQy~P 227 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRN-NGTEVQYEP 227 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceeeEecC-CCeEEEeec
Confidence 6655432221 222 23456899999999999999655 899998886
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=90.90 E-value=5.1 Score=37.47 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=45.0
Q ss_pred EEEEEcCCCcEEEEEccC----CeeEEE-e----------cCC----------CCCCeEEEEEec----CCCEEEEEeCC
Q 036605 44 LLALGTSNGDILAVDVLT----GEMKWK-S----------TGR----------HPGGLAGLAFAK----KGRSLHVVGTN 94 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~----~~~~~~-~----------~~~----------h~~~v~~v~~~~----~~~~l~s~~~d 94 (340)
.++++..||.+....... +..... . .+- ..+.+..++++. +..+|++.+.|
T Consensus 160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D 239 (547)
T PF11715_consen 160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD 239 (547)
T ss_dssp BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence 688888999998887664 211111 1 110 123456666666 67799999999
Q ss_pred CcEEEEeCCCCeEEEEeecC
Q 036605 95 GMASEMKSEMGEVIREFKAS 114 (340)
Q Consensus 95 g~i~~wd~~~~~~~~~~~~~ 114 (340)
+.+++||+.+++.+......
T Consensus 240 ~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 240 HTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp SEEEEEETTTTCEEEEEETT
T ss_pred CeEEEEECCCCeEEEEeccc
Confidence 99999999999987776543
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.018 Score=50.52 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=93.0
Q ss_pred eEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEE-EeCCCcEEEEeC
Q 036605 24 YSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHV-VGTNGMASEMKS 102 (340)
Q Consensus 24 v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~dg~i~~wd~ 102 (340)
.-...|-|.+. -++.++.+-.+..||-. ++...... .++....++|..++..++. +-..+.+.+||+
T Consensus 37 pi~~~w~~e~~---------nlavaca~tiv~~YD~a-gq~~le~n--~tg~aldm~wDkegdvlavlAek~~piylwd~ 104 (615)
T KOG2247|consen 37 PIIHRWRPEGH---------NLAVACANTIVIYYDKA-GQVILELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDV 104 (615)
T ss_pred cceeeEecCCC---------ceehhhhhhHHHhhhhh-cceecccC--CchhHhhhhhccccchhhhhhhcCCCeeechh
Confidence 34567888886 58888888899999944 33333333 5667788999887776544 456689999998
Q ss_pred CCCeEEEEeec-CCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCe
Q 036605 103 EMGEVIREFKA-SEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKH 179 (340)
Q Consensus 103 ~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~ 179 (340)
.+... ..+.. ....-.-+.|++.+..++.+.. .+.+++..+.+.+.....|...++++++.+.+..+.. +. |..
T Consensus 105 n~eyt-qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~-dc-d~~ 181 (615)
T KOG2247|consen 105 NSEYT-QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC-DC-DNT 181 (615)
T ss_pred hhhhH-HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeec-Cc-HHH
Confidence 75431 12211 1112223668888777776543 3999998877666555558888999999988744433 44 444
Q ss_pred E
Q 036605 180 L 180 (340)
Q Consensus 180 i 180 (340)
+
T Consensus 182 L 182 (615)
T KOG2247|consen 182 L 182 (615)
T ss_pred H
Confidence 3
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.45 E-value=16 Score=36.16 Aligned_cols=175 Identities=10% Similarity=0.036 Sum_probs=89.8
Q ss_pred cEEEEEccCCeeEEEecCC---CCCCeEEEEEecCCCE--EEEEeC-----------CCcEEEEeC-CCCeEEEEeecCC
Q 036605 53 DILAVDVLTGEMKWKSTGR---HPGGLAGLAFAKKGRS--LHVVGT-----------NGMASEMKS-EMGEVIREFKASE 115 (340)
Q Consensus 53 ~i~i~d~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~--l~s~~~-----------dg~i~~wd~-~~~~~~~~~~~~~ 115 (340)
.|+++|..+++.+..+.-+ ..-.+..+.|+..+.. +++|.. +|.++.|++ ..|+.+.-+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 4888898888877666431 1124566667654332 333221 233555543 2333222222111
Q ss_pred CCeeEEEEccCCCEEEE-ecCcEEEEECCCCceeEEe--ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCc
Q 036605 116 KPISSSAFLCEEKIFAL-ASSEVRILSLENGEEVLKF--SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTV 192 (340)
Q Consensus 116 ~~i~~l~~~~~~~~l~~-~~~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~ 192 (340)
-+-.-.++.|-..++++ .+..+++||+...+.+++. +.-+..|..+++. +..++.+.. .-.+.++..+....+.
T Consensus 934 ~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~-qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDI-QESVHFVRYRREDNQL 1010 (1205)
T ss_pred CCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeec-cceEEEEEEecCCCeE
Confidence 12223455565555555 5666999999988777554 2234566666663 456777666 4445555543222221
Q ss_pred cCCceeeecC-CCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 193 NKGPALSMRH-SPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 193 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
. .+.-.. +.++.. +. --|...++.+..-|.+.+-.+..
T Consensus 1011 -~--~fadD~~pR~Vt~---~~-~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1011 -I--VFADDPVPRHVTA---LE-LLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred -E--EEeCCCccceeeE---EE-EecCCceeeccccCcEEEEECCC
Confidence 1 111111 112222 22 23455678788888888876654
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.8 Score=23.88 Aligned_cols=25 Identities=32% Similarity=0.716 Sum_probs=22.0
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEe
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKS 68 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~ 68 (340)
.+++++.+|.+..+|.++|+..+.+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5888899999999999999988764
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.29 E-value=7.9 Score=30.79 Aligned_cols=100 Identities=12% Similarity=0.168 Sum_probs=63.6
Q ss_pred EEEEEcCCCcEEEEEcc--CCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC---C---cEEEE---eCC--CCeEEE-
Q 036605 44 LLALGTSNGDILAVDVL--TGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN---G---MASEM---KSE--MGEVIR- 109 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---g---~i~~w---d~~--~~~~~~- 109 (340)
.|+.+.....|.+|++. ..+...++. .-+.|..+.++..|.+|++--.+ . .+++| ... ...++.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 45555778889999988 334566666 45789999999999999996433 2 45554 221 111111
Q ss_pred Eeec---------------------CCCCeeEEEEcc-CCCEEEEecCcEEEEECCCC
Q 036605 110 EFKA---------------------SEKPISSSAFLC-EEKIFALASSEVRILSLENG 145 (340)
Q Consensus 110 ~~~~---------------------~~~~i~~l~~~~-~~~~l~~~~~~i~i~d~~~~ 145 (340)
.+-+ ...++.+++-.| .|++++..++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 1111 133556777777 47777777777999987654
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=90.25 E-value=13 Score=33.13 Aligned_cols=105 Identities=11% Similarity=0.052 Sum_probs=57.5
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE-E-EeecCCCCeeEEEEccCCCEEEEecCcEEEEECCCCc-----ee
Q 036605 76 LAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVI-R-EFKASEKPISSSAFLCEEKIFALASSEVRILSLENGE-----EV 148 (340)
Q Consensus 76 v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~-~~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~-----~~ 148 (340)
...+..++++.+++.+.....++-||- |... . .-......++.+.+.+++..++++..--.++....++ ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccce
Confidence 344455667666555433333334442 2211 1 1122345678999999999887754444444444443 12
Q ss_pred EEeec--CCCCeEEEEECCCCCEEEEEEcCCCeEEEEE
Q 036605 149 LKFSD--DVGPLQYVSASDGAKIIITAGYGEKHLQVWR 184 (340)
Q Consensus 149 ~~~~~--~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd 184 (340)
..... ....+..+.|.+++..+++ +. .|.+....
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~-G~-~G~v~~s~ 354 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAA-GG-SGILLRST 354 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEE-EC-CCcEEEeC
Confidence 22211 1235888999988876665 56 67766554
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.84 Score=24.97 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=23.7
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecC
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTG 70 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~ 70 (340)
.+++++.+|.|+.+|.++|+.++.+..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466779999999999999999998865
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=90.08 E-value=5.8 Score=28.90 Aligned_cols=101 Identities=11% Similarity=0.040 Sum_probs=60.5
Q ss_pred EEEEEcCCCcEEEEEccCCe--------eEEEecCCCCCCeEEEEEec-----CCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 036605 44 LLALGTSNGDILAVDVLTGE--------MKWKSTGRHPGGLAGLAFAK-----KGRSLHVVGTNGMASEMKSEMGEVIRE 110 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~--------~~~~~~~~h~~~v~~v~~~~-----~~~~l~s~~~dg~i~~wd~~~~~~~~~ 110 (340)
-|+.++..|.|.|++..... .+..+. -...|++++--+ +...|+.|+ ...+..||+.....+.
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~F- 87 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLF- 87 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhh-
Confidence 68888899999999866432 223333 345677776543 233566554 5589999998765432
Q ss_pred eecCCCCeeEEEEcc----CCCEEEEecCc-EEEEECCCCcee
Q 036605 111 FKASEKPISSSAFLC----EEKIFALASSE-VRILSLENGEEV 148 (340)
Q Consensus 111 ~~~~~~~i~~l~~~~----~~~~l~~~~~~-i~i~d~~~~~~~ 148 (340)
++.-...+.++.+-. +..++++++.. |.-||....+..
T Consensus 88 yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 88 YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 223345677776642 23444444433 888886655443
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.44 E-value=16 Score=33.19 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=20.0
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEe
Q 036605 75 GLAGLAFAKKGRSLHVVGTNGMASEMK 101 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~dg~i~~wd 101 (340)
.|..+..++.|..++-.|.+|.+.++=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 456677788888888888888776553
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=89.34 E-value=15 Score=32.43 Aligned_cols=100 Identities=13% Similarity=0.198 Sum_probs=57.9
Q ss_pred CCeEEEEEecCCCEEEEEe-----------CCC-cEEEEeCCC--CeE--EEEeecCCCCeeEEEEccCCCEEEEecCcE
Q 036605 74 GGLAGLAFAKKGRSLHVVG-----------TNG-MASEMKSEM--GEV--IREFKASEKPISSSAFLCEEKIFALASSEV 137 (340)
Q Consensus 74 ~~v~~v~~~~~~~~l~s~~-----------~dg-~i~~wd~~~--~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~~i 137 (340)
.....|+|.++|+.+++-. ..+ .|.+++-.+ |+. ...+...-.....+++.+++ ++++....|
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 3467889999888766542 223 777776543 322 23343334456889999999 555554456
Q ss_pred EEE-ECCCC-----c--ee-EEeec----CCCCeEEEEECCCCCEEEEEE
Q 036605 138 RIL-SLENG-----E--EV-LKFSD----DVGPLQYVSASDGAKIIITAG 174 (340)
Q Consensus 138 ~i~-d~~~~-----~--~~-~~~~~----~~~~v~~~~~s~~~~~l~s~~ 174 (340)
..| |.... + .+ ..+.. +......+.|.|||...++.+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 545 44211 1 12 12322 124467899999997766655
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=89.20 E-value=12 Score=31.43 Aligned_cols=93 Identities=11% Similarity=0.090 Sum_probs=55.4
Q ss_pred CCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe------CCCcEEEEeCCCCeEEEEeec-----CCCCee
Q 036605 51 NGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG------TNGMASEMKSEMGEVIREFKA-----SEKPIS 119 (340)
Q Consensus 51 dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~-----~~~~i~ 119 (340)
-..|++||..+.+....-.+ -.+.|+++.|..+.+.++.|. ....+..||..+..- ..+.. -..++.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEE
Confidence 34689999888765544444 678999999986555555553 345678898876642 23333 135677
Q ss_pred EEEEcc-CCCEEEEecC----c--EEEEECCCC
Q 036605 120 SSAFLC-EEKIFALASS----E--VRILSLENG 145 (340)
Q Consensus 120 ~l~~~~-~~~~l~~~~~----~--i~i~d~~~~ 145 (340)
.+.+.. |+..+..++. . |..||-.+-
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 776642 3333332211 1 667765443
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.19 E-value=3.7 Score=36.43 Aligned_cols=105 Identities=10% Similarity=0.155 Sum_probs=68.5
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC---CCCCCeEEEEEecCCCEEEEEeCCCc
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG---RHPGGLAGLAFAKKGRSLHVVGTNGM 96 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~~~dg~ 96 (340)
..++|.++.||+|.+ .||+--.+.+|.+++....+....+.. .....|.+.+|+.+ .-++.....|
T Consensus 65 d~G~I~SIkFSlDnk---------ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G- 133 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK---------ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG- 133 (657)
T ss_pred CCCceeEEEeccCcc---------eEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-
Confidence 346899999999999 999999999999999754332222211 13446899999854 5555555443
Q ss_pred EEEEeCCC-CeEEEEeecCCCCeeEEEEccCCCEEEEecC
Q 036605 97 ASEMKSEM-GEVIREFKASEKPISSSAFLCEEKIFALASS 135 (340)
Q Consensus 97 i~~wd~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 135 (340)
+-+|.... .+.++..+.++..|.=..|.++-+.++.+.+
T Consensus 134 ~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 134 IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 44444322 2234445667777777888888776654433
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=89.13 E-value=7.9 Score=32.81 Aligned_cols=44 Identities=34% Similarity=0.399 Sum_probs=31.0
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVV 91 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 91 (340)
+.++-+..|.|..+|.++|+...... -++...+++|. |.+++++
T Consensus 215 LwvldsgtGev~~vD~~~G~~e~Va~--vpG~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 215 LWLLNSGRGELGYVDPQAGKFQPVAF--LPGFTRGLAFA--GDFAFVG 258 (335)
T ss_pred EEEEECCCCEEEEEcCCCCcEEEEEE--CCCCCccccee--CCEEEEE
Confidence 77777788888888887776433222 34577888887 7777665
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=88.98 E-value=25 Score=34.58 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=75.6
Q ss_pred CCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCe----eEEEecCCCCCC----------eEEEEEecCCC
Q 036605 22 VSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGE----MKWKSTGRHPGG----------LAGLAFAKKGR 86 (340)
Q Consensus 22 ~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~~h~~~----------v~~v~~~~~~~ 86 (340)
.+...++|+|.. + .||+-...|...||++..+. ....+...+.+. -..+.|.++..
T Consensus 146 ~~~aDv~FnP~~~~---------q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~ 216 (765)
T PF10214_consen 146 FPHADVAFNPWDQR---------QFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN 216 (765)
T ss_pred CccceEEeccCccc---------eEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC
Confidence 466789999877 4 79999999999999992111 111121112233 34788988888
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEE-Ee-ecCCCCeeEEEEccC--CCEEEEecCcEEEEECCC
Q 036605 87 SLHVVGTNGMASEMKSEMGEVIR-EF-KASEKPISSSAFLCE--EKIFALASSEVRILSLEN 144 (340)
Q Consensus 87 ~l~s~~~dg~i~~wd~~~~~~~~-~~-~~~~~~i~~l~~~~~--~~~l~~~~~~i~i~d~~~ 144 (340)
.|+.++.. .+.++|+.+..... .. ......|..+.-+|. ...++.....|...++..
T Consensus 217 ~lLv~~r~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 217 RLLVCNRS-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EEEEEcCC-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 88876654 78899998876533 11 223456888888887 455566777788888776
|
These proteins are found in fungi. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=88.12 E-value=20 Score=32.49 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=59.5
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee--EEEec----CCCCCCeEEEEEecCC------CEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM--KWKST----GRHPGGLAGLAFAKKG------RSLH 89 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~----~~h~~~v~~v~~~~~~------~~l~ 89 (340)
..-+.|+|.|+++ +|++--..|.|++++..++.. +..+. ....+....|+++|+- .+|+
T Consensus 30 ~~Pw~maflPDG~---------llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 30 NKPWALLWGPDNQ---------LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred CCceEEEEcCCCe---------EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence 4567899999999 666554469999998655432 21121 1135678999999874 3455
Q ss_pred EEe----------CCCcEEEEeCCCC--e---EEEEeecC----CCCeeEEEEccCCCEEEE
Q 036605 90 VVG----------TNGMASEMKSEMG--E---VIREFKAS----EKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 90 s~~----------~dg~i~~wd~~~~--~---~~~~~~~~----~~~i~~l~~~~~~~~l~~ 132 (340)
... ....|..|.+... . ....+... ...-..|+|.|||.++++
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs 162 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYT 162 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEE
Confidence 542 1234555554321 1 11122211 122457889999987765
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.93 E-value=17 Score=31.34 Aligned_cols=99 Identities=10% Similarity=0.105 Sum_probs=45.3
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEE---EEeecCCCCe--eEEEEccCCCEEEEecC-------cEEEEECCCCc
Q 036605 84 KGRSLHVVGTN-----GMASEMKSEMGEVI---REFKASEKPI--SSSAFLCEEKIFALASS-------EVRILSLENGE 146 (340)
Q Consensus 84 ~~~~l~s~~~d-----g~i~~wd~~~~~~~---~~~~~~~~~i--~~l~~~~~~~~l~~~~~-------~i~i~d~~~~~ 146 (340)
++..++.|+.+ ..+..+|+.+.+-. ..+..-..+. .+++. -++++.+.++. ++..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566666654 35667777665431 1221111111 12222 24555555543 38889988764
Q ss_pred eeE--EeecCCCCeEEEEECCCCCEEEEEEcCCC----eEEEEEc
Q 036605 147 EVL--KFSDDVGPLQYVSASDGAKIIITAGYGEK----HLQVWRC 185 (340)
Q Consensus 147 ~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~~d~----~i~iwd~ 185 (340)
-.. .+... ......+...+++..+.++. ++ .+.+||.
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~-~~~~~~~~~~yd~ 193 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGG-SNIAYTDGYKYSP 193 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCC-CCccccceEEEec
Confidence 321 12111 11122222334556666554 32 2456776
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=87.85 E-value=17 Score=31.48 Aligned_cols=99 Identities=17% Similarity=0.259 Sum_probs=54.7
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE---EEEe----ecCCCCeeEEEEccC----CCEEEEec-C-------
Q 036605 75 GLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEV---IREF----KASEKPISSSAFLCE----EKIFALAS-S------- 135 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~----~~~~~~i~~l~~~~~----~~~l~~~~-~------- 135 (340)
..+.|+|.|+|..+++ ...|.|.+++ ..+.. +..+ .........++++|+ +.+.+... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999876664 6799999999 44543 2222 123456789999995 33333311 1
Q ss_pred --cEEEEECCCC-------cee-EEeec---CCCCeEEEEECCCCCEEEEEEc
Q 036605 136 --EVRILSLENG-------EEV-LKFSD---DVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 136 --~i~i~d~~~~-------~~~-~~~~~---~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
.|.-|.+..+ +.+ ..+.. .......|.|.|||...++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 1444444333 111 12222 2344567999999976666655
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=87.76 E-value=16 Score=31.03 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=42.4
Q ss_pred EEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEe
Q 036605 56 AVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALA 133 (340)
Q Consensus 56 i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~ 133 (340)
++|+.+++.+.. + . ....+..|+ +|++.++-+..|.+..+|.++|+....... .+....++|. |.+++++
T Consensus 189 vidv~s~evl~~--G-L-smPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~v-pG~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 189 VIDIPSGEVVAS--G-L-SMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFL-PGFTRGLAFA--GDFAFVG 258 (335)
T ss_pred EEEeCCCCEEEc--C-c-cCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEEC-CCCCccccee--CCEEEEE
Confidence 356666654421 1 1 122344565 577777777889999999988865444332 3456778887 7777653
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=87.69 E-value=9.3 Score=36.30 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=80.5
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEM 100 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~w 100 (340)
...++++.-+|.+. -++.+..||.|++|+....+...... ...+-..+.|...| |++...|..+.-|
T Consensus 14 ~e~~~aiqshp~~~---------s~v~~~~d~si~lfn~~~r~qski~~--~~~p~~nlv~tnhg--l~~~tsdrr~la~ 80 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQ---------SFVLAHQDGSIILFNFIPRRQSKICE--EAKPKENLVFTNHG--LVTATSDRRALAW 80 (1636)
T ss_pred cceeeeeeecCCCc---------eEEEEecCCcEEEEeecccchhhhhh--hcCCccceeeeccc--eEEEeccchhhee
Confidence 35677888889887 79999999999999987655422222 12233455555333 5666677777777
Q ss_pred eCCCCeEEEEeec---CCCCeeEEEEccCCCEE---------------------------EEecCcEEEEECCCCceeEE
Q 036605 101 KSEMGEVIREFKA---SEKPISSSAFLCEEKIF---------------------------ALASSEVRILSLENGEEVLK 150 (340)
Q Consensus 101 d~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l---------------------------~~~~~~i~i~d~~~~~~~~~ 150 (340)
.- +|-..+.|.- .....+++...|..+.+ .++-..|.+-|+.++.....
T Consensus 81 ~~-dgvvqqqfdyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l 159 (1636)
T KOG3616|consen 81 KE-DGVVQQQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNL 159 (1636)
T ss_pred ec-cCcchhhccccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEee
Confidence 52 3333222221 11122233333322211 12233355566666544433
Q ss_pred eecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 151 FSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 151 ~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
.....-.|..+.+....+|++. .. ..+|.+=|+.
T Consensus 160 ~s~~g~aidelkilgkdryli~-~t-s~siii~d~e 193 (1636)
T KOG3616|consen 160 ISHKGLAIDELKILGKDRYLIA-HT-SESIIIADLE 193 (1636)
T ss_pred eecCCcchhhhhhccccceEEe-ec-cccEEEeecc
Confidence 3322234455555555667766 33 4677777873
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=87.64 E-value=10 Score=31.04 Aligned_cols=88 Identities=11% Similarity=0.211 Sum_probs=49.5
Q ss_pred EEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc-----EEEEECCCCceeEEe------ecCCCCeEEEEECC
Q 036605 97 ASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE-----VRILSLENGEEVLKF------SDDVGPLQYVSASD 165 (340)
Q Consensus 97 i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~-----i~i~d~~~~~~~~~~------~~~~~~v~~~~~s~ 165 (340)
-.+||+.+++....-.....-..+-++-+||+++.+++.. +++++.........+ -...-+-..+..-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 3588988876533211122223334577899999885432 888886541111111 11122334455678
Q ss_pred CCCEEEEEEcCCCeEEEEE
Q 036605 166 GAKIIITAGYGEKHLQVWR 184 (340)
Q Consensus 166 ~~~~l~s~~~~d~~i~iwd 184 (340)
||+.|+.+|.......+|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P 146 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWP 146 (243)
T ss_pred CCCEEEEeCcCCCcccccC
Confidence 9999999888544455554
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=87.61 E-value=18 Score=31.31 Aligned_cols=103 Identities=15% Similarity=0.263 Sum_probs=64.7
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCc------EEEEeCCC--C--eEEE-----EeecCCC--------CeeEEEEccCCC
Q 036605 72 HPGGLAGLAFAKKGRSLHVVGTNGM------ASEMKSEM--G--EVIR-----EFKASEK--------PISSSAFLCEEK 128 (340)
Q Consensus 72 h~~~v~~v~~~~~~~~l~s~~~dg~------i~~wd~~~--~--~~~~-----~~~~~~~--------~i~~l~~~~~~~ 128 (340)
.-+.+..+.+.+++..+++.+++|. +..+++.. + ..+. .+....+ ...+|++.+++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 4567889999977777888888888 66665543 1 0111 1111111 344788888888
Q ss_pred EEEE--ec------CcEEEEECCCCceeEEee---------------cCCCCeEEEEECCCCCEEEEEEc
Q 036605 129 IFAL--AS------SEVRILSLENGEEVLKFS---------------DDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 129 ~l~~--~~------~~i~i~d~~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
++++ .+ ..|+.++.. |+.+..+. .......+|+++|+|+.|+++..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 8887 33 337777766 55543331 12356789999999997776544
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=87.44 E-value=8.4 Score=29.70 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=18.1
Q ss_pred CeeEEEEccCCCEEEEecCcEEEEE
Q 036605 117 PISSSAFLCEEKIFALASSEVRILS 141 (340)
Q Consensus 117 ~i~~l~~~~~~~~l~~~~~~i~i~d 141 (340)
...+|+||.||++.++++..|.|.+
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~ 30 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILD 30 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEe
Confidence 3467888888877777777777773
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.45 E-value=18 Score=30.33 Aligned_cols=105 Identities=9% Similarity=-0.037 Sum_probs=64.2
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC--CCCeeEEEEccCCCEEEEecCc--EEEEECCCCcee-
Q 036605 74 GGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKAS--EKPISSSAFLCEEKIFALASSE--VRILSLENGEEV- 148 (340)
Q Consensus 74 ~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~- 148 (340)
+-+..+.++ +++.+.+..+.-+++.|+.+-........- .+-..++.+ .|+++.+++-+ +.++|+.+....
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 455666776 678888888888999998875533222111 122344444 46677665533 778888765332
Q ss_pred --EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 149 --LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 149 --~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
..+......-..++.|. ++-+.+.. |+-+.|-|+
T Consensus 163 lagrya~~~~d~~~v~ISG--n~AYvA~~-d~GL~ivDV 198 (370)
T COG5276 163 LAGRYALPGGDTHDVAISG--NYAYVAWR-DGGLTIVDV 198 (370)
T ss_pred eeeeeccCCCCceeEEEec--CeEEEEEe-CCCeEEEEc
Confidence 33333334446677754 45555556 888999998
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=86.44 E-value=2 Score=22.27 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEe
Q 036605 86 RSLHVVGTNGMASEMKSEMGEVIREF 111 (340)
Q Consensus 86 ~~l~s~~~dg~i~~wd~~~~~~~~~~ 111 (340)
..++.++.+|.+..+|..+|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36888889999999999999876543
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=86.07 E-value=32 Score=32.70 Aligned_cols=159 Identities=15% Similarity=0.167 Sum_probs=81.2
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEE--EeecC-CC-CeeEEEEcc------CCCEEEE-ec--Cc--
Q 036605 72 HPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIR--EFKAS-EK-PISSSAFLC------EEKIFAL-AS--SE-- 136 (340)
Q Consensus 72 h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~-~~-~i~~l~~~~------~~~~l~~-~~--~~-- 136 (340)
-.+.|.++.|.++++.+++.-.+|.|.+||...+.... .++.. .. -+++ .|-+ ...++++ +. ++
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcE
Confidence 35689999999999999999999999999993332111 12111 11 1111 1111 1233333 22 22
Q ss_pred -EEEEECC-CCceeEEee---cCCCCeE--EEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceee-ecCCC--ee
Q 036605 137 -VRILSLE-NGEEVLKFS---DDVGPLQ--YVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALS-MRHSP--VA 206 (340)
Q Consensus 137 -i~i~d~~-~~~~~~~~~---~~~~~v~--~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~--~~ 206 (340)
.+++.+. ....+..+. .+..... .+++. +|. |+-- . ++.|.+|++ ...+....+.++ +-... ..
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~-LY~l-~-~~~i~~ysi--p~f~~~~tI~l~~ii~~~~~~~ 280 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGK-LYQL-S-KKTISSYSI--PNFQIQKTISLPSIIDKESDDL 280 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCE-EEEE-e-CCEEEEEEc--CCceEEEEEEechhhccccccc
Confidence 7888871 122233332 1122222 23333 443 3332 3 789999998 444433333333 11111 12
Q ss_pred eeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 207 IDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 207 ~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+.+ .++...+++.+ .++.|++.|+.-...+.
T Consensus 281 vSl----~~~s~nRvLLs-~~nkIyLld~~~~siLs 311 (670)
T PF10395_consen 281 VSL----KPPSPNRVLLS-VNNKIYLLDLKFESILS 311 (670)
T ss_pred eEe----ecCCCCeEEEE-cCCEEEEEeehhhhhhh
Confidence 222 14555556554 46679999987644433
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=86.04 E-value=3.9 Score=22.22 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=19.5
Q ss_pred CCCCeEEEEEecCCCEEEEEeC-C--CcEEEE
Q 036605 72 HPGGLAGLAFAKKGRSLHVVGT-N--GMASEM 100 (340)
Q Consensus 72 h~~~v~~v~~~~~~~~l~s~~~-d--g~i~~w 100 (340)
..+.-....|+|||+.|+.++. + |...+|
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 5567788999999998777654 3 444444
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=85.44 E-value=21 Score=30.16 Aligned_cols=207 Identities=14% Similarity=0.110 Sum_probs=109.7
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc------CC-eeEEEecC----CCCCCeEEEEEecCCC-----
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL------TG-EMKWKSTG----RHPGGLAGLAFAKKGR----- 86 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~------~~-~~~~~~~~----~h~~~v~~v~~~~~~~----- 86 (340)
.-+.|+++|.+. +-++....+...+||.. .. .++-.+.. ...+..+.+.|+....
T Consensus 24 N~WGia~~p~~~---------~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~ 94 (336)
T TIGR03118 24 NAWGLSYRPGGP---------FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG 94 (336)
T ss_pred ccceeEecCCCC---------EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence 346799999888 78888888999999986 12 22333331 1234678888874322
Q ss_pred -------EEEEEeCCCcEEEEeCCCCeE-----EEEeecC-CCCe-eEEEEc--cCCCEEEEec---CcEEEEECCCCce
Q 036605 87 -------SLHVVGTNGMASEMKSEMGEV-----IREFKAS-EKPI-SSSAFL--CEEKIFALAS---SEVRILSLENGEE 147 (340)
Q Consensus 87 -------~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~-~~~i-~~l~~~--~~~~~l~~~~---~~i~i~d~~~~~~ 147 (340)
.++.+++||+|.-|...-+.. ...+... ...+ ..+++. ..+.+|+.++ ++|.+||-.-.+.
T Consensus 95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~ 174 (336)
T TIGR03118 95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP 174 (336)
T ss_pred CCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence 357789999999998543322 1122211 1223 345544 3356665543 4488887543221
Q ss_pred e--EEeecCC-----CC-----------eEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCcee-eecCCCeeee
Q 036605 148 V--LKFSDDV-----GP-----------LQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPAL-SMRHSPVAID 208 (340)
Q Consensus 148 ~--~~~~~~~-----~~-----------v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~ 208 (340)
. ..|.... .+ |+-..-.++...=+. +..-|.|.+||. .+..++.+.. ..-..++-+.
T Consensus 175 ~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~-G~G~G~VdvFd~---~G~l~~r~as~g~LNaPWG~a 250 (336)
T TIGR03118 175 PLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVA-GAGLGYVNVFTL---NGQLLRRVASSGRLNAPWGLA 250 (336)
T ss_pred cCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCccccccc-CCCcceEEEEcC---CCcEEEEeccCCcccCCceee
Confidence 1 1111100 00 111111222222222 222578999997 3333322210 0012233333
Q ss_pred ee-cCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 209 CK-NSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 209 ~~-~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.. ..|....+.+|+.--.||+|..||..+++.+.
T Consensus 251 ~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g 285 (336)
T TIGR03118 251 IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLG 285 (336)
T ss_pred eChhhhCCCCCCeEEeecCCceeEEecCCCCceee
Confidence 31 12335667777777789999999998876555
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=84.98 E-value=4.7 Score=22.16 Aligned_cols=29 Identities=7% Similarity=0.128 Sum_probs=21.0
Q ss_pred cCCCEEEEe---cCcEEEEECCCCceeEEeec
Q 036605 125 CEEKIFALA---SSEVRILSLENGEEVLKFSD 153 (340)
Q Consensus 125 ~~~~~l~~~---~~~i~i~d~~~~~~~~~~~~ 153 (340)
|+++.|+++ ++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 567777663 34499999998887777654
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=84.80 E-value=3.2 Score=22.62 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeec
Q 036605 87 SLHVVGTNGMASEMKSEMGEVIREFKA 113 (340)
Q Consensus 87 ~l~s~~~dg~i~~wd~~~~~~~~~~~~ 113 (340)
.++.++.+|.|.-.|..+|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 467778999999999999999888764
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.50 E-value=9.1 Score=34.07 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=84.0
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE-EEecCCCCC----CeE-EEEEecCCCEEEEEe
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK-WKSTGRHPG----GLA-GLAFAKKGRSLHVVG 92 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~h~~----~v~-~v~~~~~~~~l~s~~ 92 (340)
..-+.|..+-..|||+ .|.+-+. .++.++++.+.... .++....++ .|+ .+..-..|..|+.++
T Consensus 218 ~~~~~v~qllL~Pdg~---------~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~ 287 (733)
T COG4590 218 VPFSDVSQLLLTPDGK---------TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVH 287 (733)
T ss_pred CCccchHhhEECCCCC---------EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEc
Confidence 4456788888899998 6666554 67888888765422 122110122 122 122223466788889
Q ss_pred CCCcEEEE-eCCCCe-----EEEEeecCCCCeeEEEEccCCCEEEE--ecCcEEEEECCCCceeEEeecCCCCeEEEEEC
Q 036605 93 TNGMASEM-KSEMGE-----VIREFKASEKPISSSAFLCEEKIFAL--ASSEVRILSLENGEEVLKFSDDVGPLQYVSAS 164 (340)
Q Consensus 93 ~dg~i~~w-d~~~~~-----~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s 164 (340)
.||.|.-| |.+.+. .++.++-...++..+.-....+-+++ -.+++.++.....+.+ -+..-...+..+.+|
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l-L~~~~~~~~~~~~~S 366 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL-LFERAYQAPQLVAMS 366 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce-ehhhhhcCcceeeeC
Confidence 99999877 443221 12223333333333332222233333 2333444443322222 122222356778999
Q ss_pred CCCCEEEEEEcCCCeEEEEEcc
Q 036605 165 DGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 165 ~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
|.+.++++ -. .|.++++.++
T Consensus 367 p~~~~Ll~-e~-~gki~~~~l~ 386 (733)
T COG4590 367 PNQAYLLS-ED-QGKIRLAQLE 386 (733)
T ss_pred cccchhee-ec-CCceEEEEec
Confidence 99999988 33 6899999983
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=84.38 E-value=14 Score=27.03 Aligned_cols=103 Identities=13% Similarity=0.106 Sum_probs=61.0
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCe--------EEEEeecCCCCeeEEEEcc-----CCCEEEEecCc-EEEEECCC
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSEMGE--------VIREFKASEKPISSSAFLC-----EEKIFALASSE-VRILSLEN 144 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~~~~--------~~~~~~~~~~~i~~l~~~~-----~~~~l~~~~~~-i~i~d~~~ 144 (340)
-.|......|+.++.-|+|.++++.... .+..+. -...|++|+-.+ +...|+.++.+ +..||...
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 3455455567777888889998876432 223333 234567776544 34566666655 99999988
Q ss_pred CceeEEeecCCCCeEEEEE---CC-CCCEEEEEEcCCCeEEEEEc
Q 036605 145 GEEVLKFSDDVGPLQYVSA---SD-GAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 145 ~~~~~~~~~~~~~v~~~~~---s~-~~~~l~s~~~~d~~i~iwd~ 185 (340)
...+.- +.-+..+.++.+ .. +...++. +. ...|.-||.
T Consensus 83 N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~iv-GG-ncsi~Gfd~ 124 (136)
T PF14781_consen 83 NSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIV-GG-NCSIQGFDY 124 (136)
T ss_pred Cchhhh-hhCccceeEEEEEecCCCCCcEEEE-Cc-eEEEEEeCC
Confidence 755422 223356777766 22 3445555 33 467777765
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=84.35 E-value=32 Score=31.24 Aligned_cols=103 Identities=13% Similarity=0.035 Sum_probs=59.5
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE--EEe----e-cCCCCeeEEEEccCC------CEEEEe------
Q 036605 73 PGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVI--REF----K-ASEKPISSSAFLCEE------KIFALA------ 133 (340)
Q Consensus 73 ~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~--~~~----~-~~~~~i~~l~~~~~~------~~l~~~------ 133 (340)
-..-+.|+|.||++.|++--..|.|++++..++... ..+ . ........|+++|+- .+|+..
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 345689999999977776444699999986655322 111 1 135678899999885 233321
Q ss_pred c-----C-cEEEEECCCC--ce---eEEeecC----CCCeEEEEECCCCCEEEEEEc
Q 036605 134 S-----S-EVRILSLENG--EE---VLKFSDD----VGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 134 ~-----~-~i~i~d~~~~--~~---~~~~~~~----~~~v~~~~~s~~~~~l~s~~~ 175 (340)
+ . .|.-|.+... .. ...+... ...-..|.|.|||..+++.++
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 1 1 2544554321 00 1112111 122457889999987777665
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=84.11 E-value=3.9 Score=22.48 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=16.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 036605 84 KGRSLHVVGTNGMASEMKSEM 104 (340)
Q Consensus 84 ~~~~l~s~~~dg~i~~wd~~~ 104 (340)
.+..++.++.||.+..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 366899999999999999764
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=83.74 E-value=26 Score=29.68 Aligned_cols=169 Identities=9% Similarity=0.109 Sum_probs=83.4
Q ss_pred CccCCCCceeeeeeCCC--CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCC-------
Q 036605 1 IWSTNDGSLLAEWKQPD--GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGR------- 71 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~------- 71 (340)
+||+.++++++.|.-+. ....+....+.+..... .+ +. .-..++-+..+-|.+||+.+++.-+.+...
T Consensus 38 ~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~-~~-~~-~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 38 AFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDG-NC-DD-GFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTT-TS--S-EEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEECCCCcEEEEEECChHHcccccccceEEEEccCC-CC-cc-eEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 48999999887665431 12235566777754210 00 00 013344445568999999998754433220
Q ss_pred -----------CCCCeEEEEEec---CCCEEEEEeCCC-cEEEEeC---CCCe---------EEEEeecCCCCeeEEEEc
Q 036605 72 -----------HPGGLAGLAFAK---KGRSLHVVGTNG-MASEMKS---EMGE---------VIREFKASEKPISSSAFL 124 (340)
Q Consensus 72 -----------h~~~v~~v~~~~---~~~~l~s~~~dg-~i~~wd~---~~~~---------~~~~~~~~~~~i~~l~~~ 124 (340)
..+.+..++.+| +++.|+...-.+ .++-... .+.. .+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 112355666655 556666655432 2222211 1110 111121111345678888
Q ss_pred cCCCEEEE--ecCcEEEEECCCCc---eeEEe-ecC--CCCeEEEEECC--CCCEEEE
Q 036605 125 CEEKIFAL--ASSEVRILSLENGE---EVLKF-SDD--VGPLQYVSASD--GAKIIIT 172 (340)
Q Consensus 125 ~~~~~l~~--~~~~i~i~d~~~~~---~~~~~-~~~--~~~v~~~~~s~--~~~~l~s 172 (340)
++|.++++ ....|..|+..+.- ....+ ... -..+..+.+.+ +|...+.
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 98888877 33449999987621 11222 222 35778888888 6644443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=83.51 E-value=27 Score=33.50 Aligned_cols=139 Identities=11% Similarity=0.084 Sum_probs=80.4
Q ss_pred EEEEEcCCCcEEEEEccCCeeEE------Eec----------C-----CCCCCeEEEEEec--CCCEEEEEeCCCcEEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKW------KST----------G-----RHPGGLAGLAFAK--KGRSLHVVGTNGMASEM 100 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~------~~~----------~-----~h~~~v~~v~~~~--~~~~l~s~~~dg~i~~w 100 (340)
+|+++. .+.|.||+...-.... .+. . ..+..|+.|.... +...|+.|.+||.|.+|
T Consensus 51 ~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Y 129 (717)
T PF08728_consen 51 LLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLAY 129 (717)
T ss_pred EEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEEE
Confidence 566654 7789999976432211 110 0 0112355554432 34578889999999999
Q ss_pred eCCC-------C----e---------EEEEeecCCCCeeEEEEc--cCCCEEEEecCc--EEEE--ECCCCcee-EEeec
Q 036605 101 KSEM-------G----E---------VIREFKASEKPISSSAFL--CEEKIFALASSE--VRIL--SLENGEEV-LKFSD 153 (340)
Q Consensus 101 d~~~-------~----~---------~~~~~~~~~~~i~~l~~~--~~~~~l~~~~~~--i~i~--d~~~~~~~-~~~~~ 153 (340)
..++ . + +...+. -....++++++ ...+++|++++. |.|| .+...+.. ..-..
T Consensus 130 yt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~ 208 (717)
T PF08728_consen 130 YTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQ 208 (717)
T ss_pred EHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccc
Confidence 6421 0 0 111122 23467899998 778888887766 4444 44322211 11113
Q ss_pred CCCCeEEEEECCC-----CC-EEEEEEcCCCeEEEEEc
Q 036605 154 DVGPLQYVSASDG-----AK-IIITAGYGEKHLQVWRC 185 (340)
Q Consensus 154 ~~~~v~~~~~s~~-----~~-~l~s~~~~d~~i~iwd~ 185 (340)
+...|.++.|-++ |. .+++++- .|.+.+|++
T Consensus 209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI-~G~v~~~~I 245 (717)
T PF08728_consen 209 HSHNIPNVSFLDDDLDPNGHVKVVATDI-SGEVWTFKI 245 (717)
T ss_pred cccCCCeeEeecCCCCCccceEEEEEec-cCcEEEEEE
Confidence 5567889999554 32 5555555 899999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.18 E-value=57 Score=33.21 Aligned_cols=140 Identities=12% Similarity=0.154 Sum_probs=70.4
Q ss_pred EEEEEcC---------CCcEEEEEccC-----Ce------eEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 036605 44 LLALGTS---------NGDILAVDVLT-----GE------MKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSE 103 (340)
Q Consensus 44 ~l~~g~~---------dg~i~i~d~~~-----~~------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~ 103 (340)
|||+|+. .|.++|||+-. |+ ....+....+|.|..++=- +| +|++ +....|.+|+++
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G-~l~~-~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RG-HLLS-SQGQKIIVRKLD 1124 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-cc-EEEE-ccCcEEEEEEec
Confidence 8998864 38999999632 22 2222233467788887743 45 4444 344589999984
Q ss_pred CCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCC-ceeEEee--cCCCCeEEEEECCCCC--EEEEEEcC
Q 036605 104 MGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENG-EEVLKFS--DDVGPLQYVSASDGAK--IIITAGYG 176 (340)
Q Consensus 104 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~-~~~~~~~--~~~~~v~~~~~s~~~~--~l~s~~~~ 176 (340)
....+.-...-.-+++-....--.++++.+|-- |.+.-.... ..+..+. ...-.+.++.|.-+|. +++++..
T Consensus 1125 r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa- 1203 (1366)
T KOG1896|consen 1125 RDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDA- 1203 (1366)
T ss_pred cCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcC-
Confidence 333222111112222222222233444444322 333322221 1121121 1123466777755544 4555444
Q ss_pred CCeEEEEEccC
Q 036605 177 EKHLQVWRCDI 187 (340)
Q Consensus 177 d~~i~iwd~~~ 187 (340)
++.|++|-...
T Consensus 1204 ~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1204 DRNIHVYMYAP 1214 (1366)
T ss_pred CCcEEEEEeCC
Confidence 99999998743
|
|
| >KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.83 E-value=32 Score=30.21 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=62.2
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee----E----------E
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM----K----------W 66 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~----~----------~ 66 (340)
+|...++++.+++... .....+.++.|-.+..+ +..+.-++..++.++++.....+. + +
T Consensus 233 vy~w~~~~~~QtidL~--~~gllpleiRfLh~p~~-----~~~fvg~Al~s~i~~~~k~~~~tws~~~visvp~~kv~~w 305 (476)
T KOG0918|consen 233 VYQWSPGELKQTIDLG--DTGLLPLEIRFLHNPSK-----ATGFVGCALSSNIFRFFKNSDDTWSAEVVISVPPLKVENW 305 (476)
T ss_pred EEecCCccceeEEecC--CCCcceEEeeeccCCCc-----ccceeeeeccCCceeeeeccccccceeEEEecCccccccc
Confidence 5777788888877754 33567788888544320 111455555666677665443221 1 1
Q ss_pred EecCCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCCe
Q 036605 67 KSTGRHPGGLAGLAFAKKGRSLHVVGT-NGMASEMKSEMGE 106 (340)
Q Consensus 67 ~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~~wd~~~~~ 106 (340)
.+.. -++-|+.+-.|-|.++|+.+.. -|.|+-||+..-.
T Consensus 306 ~~~e-MP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~ 345 (476)
T KOG0918|consen 306 ILPE-MPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPK 345 (476)
T ss_pred cCcc-cchhhheeEEeecCcEEEEEeeeecceeeeccCCCC
Confidence 1122 4567899999999999988764 5899999987644
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.74 E-value=22 Score=28.25 Aligned_cols=119 Identities=11% Similarity=0.050 Sum_probs=63.3
Q ss_pred CCCEEEEe----cCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeec
Q 036605 126 EEKIFALA----SSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMR 201 (340)
Q Consensus 126 ~~~~l~~~----~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 201 (340)
+|.++.+. ...|++||+.+++.+.+-.-....+..--...-+.++..-...++.-.++|. .+.+....+.+ +
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~--~t~~~lg~~~y--~ 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDA--DTLEELGRFSY--E 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEECh--HHhhhhccccc--C
Confidence 45555553 3339999999998876543321111111111123344443455888888887 45444444432 2
Q ss_pred CCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCCCceEEEeeccccccc
Q 036605 202 HSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTNPAKITVKLKKADADQ 260 (340)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p~~i~~~~~~~~~~~ 260 (340)
...+ .+ ..|+..|+.+.....+++-|.++-.... ++++..++.|+..
T Consensus 131 GeGW--gL-----t~d~~~LimsdGsatL~frdP~tfa~~~-----~v~VT~~g~pv~~ 177 (262)
T COG3823 131 GEGW--GL-----TSDDKNLIMSDGSATLQFRDPKTFAELD-----TVQVTDDGVPVSK 177 (262)
T ss_pred Ccce--ee-----ecCCcceEeeCCceEEEecCHHHhhhcc-----eEEEEECCeeccc
Confidence 2222 22 3455556666666667766766654444 5667666655444
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.47 E-value=32 Score=31.83 Aligned_cols=100 Identities=13% Similarity=0.173 Sum_probs=61.2
Q ss_pred EEEEcCCCcEEEEEccC-CeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEee--c---CCCCe
Q 036605 45 LALGTSNGDILAVDVLT-GEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK--A---SEKPI 118 (340)
Q Consensus 45 l~~g~~dg~i~i~d~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~---~~~~i 118 (340)
+-.|+...-+..|+.++ +...-...+...++|..+-=.|+++ |..|+.+|.++. +.+.++....+. . ..+.+
T Consensus 389 lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~ 466 (671)
T COG3292 389 LWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRV 466 (671)
T ss_pred EEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchh
Confidence 55555553345555554 3333333333456788888888887 777888876654 445544433322 1 12346
Q ss_pred eEEEEccCCCEEEEecCcEEEEECCCCc
Q 036605 119 SSSAFLCEEKIFALASSEVRILSLENGE 146 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~~~~i~i~d~~~~~ 146 (340)
..+.+.|+|+.-+..+..|..|+.+...
T Consensus 467 ~~lg~~~~g~Lw~a~g~gva~~~sq~~~ 494 (671)
T COG3292 467 EQLGLGPDGRLWLAAGSGVAAWESQRRM 494 (671)
T ss_pred hhhccCCCCceEEEecceeeeeccccce
Confidence 7788999999887777678888876543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=82.39 E-value=32 Score=29.75 Aligned_cols=155 Identities=13% Similarity=0.133 Sum_probs=89.3
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCc------EEEEEccC--C--ee-----EEEecCCCCC--------CeE
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGD------ILAVDVLT--G--EM-----KWKSTGRHPG--------GLA 77 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~------i~i~d~~~--~--~~-----~~~~~~~h~~--------~v~ 77 (340)
-+..+.|.+.|++. .+++-+.+|. ++.+++.. + .. ...+.. -.+ ..-
T Consensus 19 ~GGlSgl~~~~~~~---------~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~G~~~~~~~~D~E 88 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG---------RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRD-PDGQPFPKNGLDPE 88 (326)
T ss_pred cCcEeeEEEeCCCC---------EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccC-CCCCcCCcCCCChh
Confidence 35678899986554 3566667777 66555443 1 00 111121 111 234
Q ss_pred EEEEecCCCEEEEEeCC------CcEEEEeCCCCeEEEEee---------------cCCCCeeEEEEccCCCEEEE----
Q 036605 78 GLAFAKKGRSLHVVGTN------GMASEMKSEMGEVIREFK---------------ASEKPISSSAFLCEEKIFAL---- 132 (340)
Q Consensus 78 ~v~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~---------------~~~~~i~~l~~~~~~~~l~~---- 132 (340)
+|++.+++.++++.-.+ ..|..++.. |+....+. .......+|+++|+|+.|++
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 77887788888876667 789999876 66544431 12346789999999995533
Q ss_pred ---ecC--c---------EEEEECCC-CceeEEe--ec-------CCCCeEEEEECCCCCEEEEEEc----CCCeEEEEE
Q 036605 133 ---ASS--E---------VRILSLEN-GEEVLKF--SD-------DVGPLQYVSASDGAKIIITAGY----GEKHLQVWR 184 (340)
Q Consensus 133 ---~~~--~---------i~i~d~~~-~~~~~~~--~~-------~~~~v~~~~~s~~~~~l~s~~~----~d~~i~iwd 184 (340)
.++ . |..||..+ +.....+ .. ....+..+.+-+++++++.--. ....++|+.
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 111 1 44455554 3222222 21 3467888888888886664111 134566666
Q ss_pred cc
Q 036605 185 CD 186 (340)
Q Consensus 185 ~~ 186 (340)
++
T Consensus 248 v~ 249 (326)
T PF13449_consen 248 VD 249 (326)
T ss_pred EE
Confidence 64
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=81.50 E-value=44 Score=30.74 Aligned_cols=114 Identities=17% Similarity=0.203 Sum_probs=59.7
Q ss_pred EEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCC---CCeEEEEEecCCCEEEEEeC----------
Q 036605 27 LACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHP---GGLAGLAFAKKGRSLHVVGT---------- 93 (340)
Q Consensus 27 l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~~---------- 93 (340)
+...++|. +++... ..+..+|+. |+.++.+.- -. ..=..+.+.|+|+.|+.+..
T Consensus 153 ~~~l~nG~---------ll~~~~--~~~~e~D~~-G~v~~~~~l-~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~ 219 (477)
T PF05935_consen 153 FKQLPNGN---------LLIGSG--NRLYEIDLL-GKVIWEYDL-PGGYYDFHHDIDELPNGNLLILASETKYVDEDKDV 219 (477)
T ss_dssp EEE-TTS----------EEEEEB--TEEEEE-TT---EEEEEE---TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE
T ss_pred eeEcCCCC---------EEEecC--CceEEEcCC-CCEEEeeec-CCcccccccccEECCCCCEEEEEeecccccCCCCc
Confidence 55567777 555443 778888875 555554432 11 11246677889998887771
Q ss_pred ---CCcEEEEeCCCCeEEEEeec--C----C---------------------CCeeEEEEcc-CCCEEEEecCc--EEEE
Q 036605 94 ---NGMASEMKSEMGEVIREFKA--S----E---------------------KPISSSAFLC-EEKIFALASSE--VRIL 140 (340)
Q Consensus 94 ---dg~i~~wd~~~~~~~~~~~~--~----~---------------------~~i~~l~~~~-~~~~l~~~~~~--i~i~ 140 (340)
.-.|..+| .+|+.+..+.. | . .-+.++.+.+ ++.+++++-.. |...
T Consensus 220 ~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~I 298 (477)
T PF05935_consen 220 DTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKI 298 (477)
T ss_dssp ---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEE
T ss_pred cEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEE
Confidence 12466777 88888776431 1 0 1257888888 55555555444 8888
Q ss_pred ECCCCceeEEeecC
Q 036605 141 SLENGEEVLKFSDD 154 (340)
Q Consensus 141 d~~~~~~~~~~~~~ 154 (340)
|.++++....+..+
T Consensus 299 d~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 299 DYRTGKIKWILGPP 312 (477)
T ss_dssp E-TTS-EEEEES-S
T ss_pred ECCCCcEEEEeCCC
Confidence 88888766555443
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=81.31 E-value=55 Score=31.75 Aligned_cols=149 Identities=3% Similarity=-0.085 Sum_probs=75.0
Q ss_pred EEEEeeccccccccccCceEEEEEcCC------CcEEEEEccCC--eeEEEecCCCCCCeE-EEEEecCCCEEEEEeC--
Q 036605 25 SCLACGFVGKKRRKERGTLLLALGTSN------GDILAVDVLTG--EMKWKSTGRHPGGLA-GLAFAKKGRSLHVVGT-- 93 (340)
Q Consensus 25 ~~l~~sp~~~~~~~~~~~~~l~~g~~d------g~i~i~d~~~~--~~~~~~~~~h~~~v~-~v~~~~~~~~l~s~~~-- 93 (340)
..++|++|++ .|+....+ ..|+.+++.++ +....+.. ...... .+..+.++++++..+.
T Consensus 175 ~~~~w~~D~~---------~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e-~~~~~~~~~~~s~d~~~l~i~~~~~ 244 (686)
T PRK10115 175 PSFVWANDSW---------TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEE-KDDTFYVSLHKTTSKHYVVIHLASA 244 (686)
T ss_pred eEEEEeeCCC---------EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEee-CCCCEEEEEEEcCCCCEEEEEEECC
Confidence 4599999986 45544332 36788888877 33333433 222333 2233447776655433
Q ss_pred -CCcEEEEeC--CCCeEEEEeecCCCCeeEEEEccCCCEEEEecC---c--EEEEECCCCceeEEeecC-C-CCeEEEEE
Q 036605 94 -NGMASEMKS--EMGEVIREFKASEKPISSSAFLCEEKIFALASS---E--VRILSLENGEEVLKFSDD-V-GPLQYVSA 163 (340)
Q Consensus 94 -dg~i~~wd~--~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---~--i~i~d~~~~~~~~~~~~~-~-~~v~~~~~ 163 (340)
++.+.+++. .++.....+.........+. +..+.+++..+. . |...++........+..+ . ..+..+.+
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 323 (686)
T PRK10115 245 TTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTL 323 (686)
T ss_pred ccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEE
Confidence 357888884 33443223332223333332 323333333222 1 444455422222334344 2 36777777
Q ss_pred CCCCCEEEEEEcCCCeEEEEEcc
Q 036605 164 SDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 164 s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
. +.+|+.....++.-+++-++
T Consensus 324 ~--~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 324 F--TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred E--CCEEEEEEEeCCEEEEEEEc
Confidence 6 33555555547777777664
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.02 E-value=67 Score=32.62 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=25.2
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCccCCCCC
Q 036605 215 GEDGTVILAVAESGVAYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 215 ~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~p 246 (340)
..++..++++..||.+.+||...+......++
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~~~~~~~ 274 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKLQIARNP 274 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCceeecCcc
Confidence 46788999999999999999998655443333
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=80.67 E-value=35 Score=29.10 Aligned_cols=134 Identities=14% Similarity=0.184 Sum_probs=0.0
Q ss_pred EcCCCcEEEEEccCCeeEEEecCCCC------------CCeEEEEEecCCCEEEE------------------EeCCCcE
Q 036605 48 GTSNGDILAVDVLTGEMKWKSTGRHP------------GGLAGLAFAKKGRSLHV------------------VGTNGMA 97 (340)
Q Consensus 48 g~~dg~i~i~d~~~~~~~~~~~~~h~------------~~v~~v~~~~~~~~l~s------------------~~~dg~i 97 (340)
|-..|.+.+.| ...+.++++.. .. .....+.+.++|..|++ --.|+.+
T Consensus 21 g~g~G~~~~lD-~~y~~i~~v~~-~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~ 98 (299)
T PF14269_consen 21 GYGYGSYVILD-SSYEVIWNVSA-GNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVF 98 (299)
T ss_pred ccccceEEEEC-CCCcEEEEEEC-CCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEeccee
Q ss_pred EEEeCCCCeEEEEeec---------------------------CCCCeeEEEEccCCCEEEEecCc--EEEEECCCCcee
Q 036605 98 SEMKSEMGEVIREFKA---------------------------SEKPISSSAFLCEEKIFALASSE--VRILSLENGEEV 148 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~---------------------------~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~ 148 (340)
.-.|+.+++.+.++.. .---+.+|...++|.+|+++-.. |.+.|-++|+.+
T Consensus 99 ~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~ 178 (299)
T PF14269_consen 99 QEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKII 178 (299)
T ss_pred EEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEE
Q ss_pred EEeecCCCCeEE-----EEECCCCCEEEEEEcCCCeEEEEE
Q 036605 149 LKFSDDVGPLQY-----VSASDGAKIIITAGYGEKHLQVWR 184 (340)
Q Consensus 149 ~~~~~~~~~v~~-----~~~s~~~~~l~s~~~~d~~i~iwd 184 (340)
-.+.+....-.. .++-.+-+++-.+.. ++.|.+||
T Consensus 179 W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~-~~~IslFD 218 (299)
T PF14269_consen 179 WRLGGKRNSDFTLPATNFSWQHDARFLNESND-DGTISLFD 218 (299)
T ss_pred EEeCCCCCCcccccCCcEeeccCCEEeccCCC-CCEEEEEc
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=80.20 E-value=18 Score=35.50 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=57.0
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEE-ecCCCCCCeEEEEEecCCCEEEE-EeCCC-----cEEEEeCCCC-eEEEEeecCC
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWK-STGRHPGGLAGLAFAKKGRSLHV-VGTNG-----MASEMKSEMG-EVIREFKASE 115 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s-~~~dg-----~i~~wd~~~~-~~~~~~~~~~ 115 (340)
+.+.....+.|.+-|......... +. +...|...+|||||+.|+. .+..+ .|++-++.+. .-+.++....
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~--~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~ 398 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIE--DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN 398 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEec--CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence 333333446888888776554432 33 7789999999999999888 44443 4888887753 2334555556
Q ss_pred CCeeEEEEccCCCEEEE
Q 036605 116 KPISSSAFLCEEKIFAL 132 (340)
Q Consensus 116 ~~i~~l~~~~~~~~l~~ 132 (340)
..|..-.+.++|..+++
T Consensus 399 aaiprwrv~e~gdt~iv 415 (912)
T TIGR02171 399 AAIPRWRVLENGDTVIV 415 (912)
T ss_pred ccccceEecCCCCeEEE
Confidence 66776677777765543
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 340 | |||
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 3e-04 |
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Query: 47 LGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGE 106
L N ++A+ + G W + L +L V + G + E G
Sbjct: 282 LVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDGR 339
Query: 107 VIREFKASEKPISSSAFLCEEKIFALASS 135
+ + K + + K+ A
Sbjct: 340 FVAQQKVDSSGFQTEPVAADGKLLIQAKD 368
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 340 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.98 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.96 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.96 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.96 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.96 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.96 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.96 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.96 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.96 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.95 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.95 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.94 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.93 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.93 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.93 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.93 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.9 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.88 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.87 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.86 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.85 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.85 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.84 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.83 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.83 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.82 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.82 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.82 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.81 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.81 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.81 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.8 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.79 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.77 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.77 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.76 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.76 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.76 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.75 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.75 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.75 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.74 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.74 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.73 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.72 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.71 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.7 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.67 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.67 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.66 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.64 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.64 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.64 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.61 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.61 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.61 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.6 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.6 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.59 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.59 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.58 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.58 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.57 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.57 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.56 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.55 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.54 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.54 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.53 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.52 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.46 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.45 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.45 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.45 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.44 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.42 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.41 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.39 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.39 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.37 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.35 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.33 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.31 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.31 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.3 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.3 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.3 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.29 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.26 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.25 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.24 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.23 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.23 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.23 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.2 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.2 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.19 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.16 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.16 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.16 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.13 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.1 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.09 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.09 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.08 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.06 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.06 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.01 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.99 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.98 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.97 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.97 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.94 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.94 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.91 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.89 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.87 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.85 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.85 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.82 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.8 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.8 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.79 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.76 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.75 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.69 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.68 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.68 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.68 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.68 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.67 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.67 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.66 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.64 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.61 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.6 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.58 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.57 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.53 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.51 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.5 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.45 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.45 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.44 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.38 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.33 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.32 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.29 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.27 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.26 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.23 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.22 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.22 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.19 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.18 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.17 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.16 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.13 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.06 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.06 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.03 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.98 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.97 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.96 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.95 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.92 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.91 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.9 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.89 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.74 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.72 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.71 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.7 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.69 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.67 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.63 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.61 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.59 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.54 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.52 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.49 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.43 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.41 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.33 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.28 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.26 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.18 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.13 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.12 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.11 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.11 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.08 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.05 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.99 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.93 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.89 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.81 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.8 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.69 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.66 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.58 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.42 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.33 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.27 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.15 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.09 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.07 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.01 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.76 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.65 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.28 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.22 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.08 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.01 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.91 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 94.86 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.82 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 94.75 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.24 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 94.16 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.78 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.66 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 93.36 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 92.85 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 92.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 92.69 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 92.08 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 92.07 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.0 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 91.81 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 91.02 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 88.55 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 86.48 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 83.85 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 82.46 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 81.08 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.86 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-36 Score=263.63 Aligned_cols=219 Identities=16% Similarity=0.207 Sum_probs=196.6
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.++++...+. +|...|++++|+|+++ +|++|+.||+|++||+.+++.+..+.+ |...|.+++
T Consensus 134 vwd~~~~~~~~~l~----~h~~~V~~v~~~~~~~---------~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~~V~~v~ 199 (410)
T 1vyh_C 134 VWDYETGDFERTLK----GHTDSVQDISFDHSGK---------LLASCSADMTIKLWDFQGFECIRTMHG-HDHNVSSVS 199 (410)
T ss_dssp EEETTTCCCCEEEC----CCSSCEEEEEECTTSS---------EEEEEETTSCCCEEETTSSCEEECCCC-CSSCEEEEE
T ss_pred EEECCCCcEEEEEe----ccCCcEEEEEEcCCCC---------EEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCEEEEE
Confidence 69999999998888 8999999999999999 999999999999999999998888888 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v 158 (340)
|+|++..|++++.|+.|++||+.++..+..+.+|...+.++.++|++.++++++.+ |++||+.+++....+..|...|
T Consensus 200 ~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v 279 (410)
T 1vyh_C 200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279 (410)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceE
Confidence 99999999999999999999999999999999999999999999999999886554 9999999999999999999999
Q ss_pred EEEEECCC--------------------CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCC
Q 036605 159 QYVSASDG--------------------AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDG 218 (340)
Q Consensus 159 ~~~~~s~~--------------------~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (340)
.+++|+|+ +.+|++++. |+.|++||+ .++.....+. +|...+..+ .| ++++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~-D~~i~iwd~--~~~~~~~~~~---~h~~~v~~v--~~-~~~g 350 (410)
T 1vyh_C 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-DKTIKMWDV--STGMCLMTLV---GHDNWVRGV--LF-HSGG 350 (410)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEET-TSEEEEEET--TTTEEEEEEE---CCSSCEEEE--EE-CSSS
T ss_pred EEEEEcCcccccchhhhccccccccCCCCCEEEEEeC-CCeEEEEEC--CCCceEEEEE---CCCCcEEEE--EE-cCCC
Confidence 99999996 668888877 999999998 4444433333 677777666 66 8999
Q ss_pred CEEEEEeCCCcEEEEECCCCCccC
Q 036605 219 TVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 219 ~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.+|++++.||.|++||+.+++.+.
T Consensus 351 ~~l~s~s~D~~i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 351 KFILSCADDKTLRVWDYKNKRCMK 374 (410)
T ss_dssp SCEEEEETTTEEEEECCTTSCCCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE
Confidence 999999999999999998776554
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=253.18 Aligned_cols=222 Identities=15% Similarity=0.211 Sum_probs=193.5
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||..+++....+... +|...|.+++|+|++. ++++|+.|++|++||+.+++.+..+.. |...+.+++
T Consensus 62 vW~~~~~~~~~~~~l~--gh~~~v~~~~~~~~~~---------~l~s~s~D~~i~lWd~~~~~~~~~~~~-~~~~~~~~~ 129 (321)
T 3ow8_A 62 VWKWRDERLDLQWSLE--GHQLGVVSVDISHTLP---------IAASSSLDAHIRLWDLENGKQIKSIDA-GPVDAWTLA 129 (321)
T ss_dssp EEEEETTEEEEEEEEC--CCSSCEEEEEECSSSS---------EEEEEETTSEEEEEETTTTEEEEEEEC-CTTCCCCEE
T ss_pred EEECCCCCeeeeeeec--cCCCCEEEEEECCCCC---------EEEEEeCCCcEEEEECCCCCEEEEEeC-CCccEEEEE
Confidence 5888777654433333 8999999999999999 999999999999999999999888887 888999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v 158 (340)
|+|++++|++++.||.|++|++.+++....+..+...+.+++|+|++++|++++.+ |++||+++++.+..+.+|..+|
T Consensus 130 ~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v 209 (321)
T 3ow8_A 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 209 (321)
T ss_dssp ECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCC
T ss_pred ECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCce
Confidence 99999999999999999999999999998899899999999999999999986554 9999999999999999999999
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.+++|+|++++|++++. |+.|++||++ .+.....+. .|...+..+ .| +|++.+|++++.||.|++||+.++
T Consensus 210 ~~l~~spd~~~l~s~s~-dg~i~iwd~~--~~~~~~~~~---~h~~~v~~~--~~-sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 210 RSLTFSPDSQLLVTASD-DGYIKIYDVQ--HANLAGTLS---GHASWVLNV--AF-CPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp CEEEECTTSCEEEEECT-TSCEEEEETT--TCCEEEEEC---CCSSCEEEE--EE-CTTSSEEEEEETTSCEEEEETTTT
T ss_pred eEEEEcCCCCEEEEEcC-CCeEEEEECC--CcceeEEEc---CCCCceEEE--EE-CCCCCEEEEEeCCCcEEEEeCCCC
Confidence 99999999999999877 9999999983 443333332 566666666 66 899999999999999999999887
Q ss_pred CccCC
Q 036605 239 SQDEK 243 (340)
Q Consensus 239 ~~~~~ 243 (340)
+.+..
T Consensus 281 ~~~~~ 285 (321)
T 3ow8_A 281 TCVHT 285 (321)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65553
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=252.71 Aligned_cols=213 Identities=16% Similarity=0.273 Sum_probs=192.6
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.+++.+..+. .+...+.+++|+|+++ +|++|+.+|.|++|++.+++....+.. |...|.+++
T Consensus 106 lWd~~~~~~~~~~~----~~~~~~~~~~~spdg~---------~l~~g~~dg~v~i~~~~~~~~~~~~~~-~~~~v~~~~ 171 (321)
T 3ow8_A 106 LWDLENGKQIKSID----AGPVDAWTLAFSPDSQ---------YLATGTHVGKVNIFGVESGKKEYSLDT-RGKFILSIA 171 (321)
T ss_dssp EEETTTTEEEEEEE----CCTTCCCCEEECTTSS---------EEEEECTTSEEEEEETTTCSEEEEEEC-SSSCEEEEE
T ss_pred EEECCCCCEEEEEe----CCCccEEEEEECCCCC---------EEEEEcCCCcEEEEEcCCCceeEEecC-CCceEEEEE
Confidence 69999999988887 6778899999999999 999999999999999999998888887 888999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v 158 (340)
|+|++++|++++.||.|++||+.+++.+..+.+|..+|.+++|+|++++|++++.+ |++||+++++.+..+.+|...|
T Consensus 172 ~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v 251 (321)
T 3ow8_A 172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 251 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCce
Confidence 99999999999999999999999999999999999999999999999999997655 9999999999999999999999
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.+++|+|++.+|++++. |+.|++||+ .+++....+. .|...+..+ .| ++++.+|++++.||.|++||..
T Consensus 252 ~~~~~sp~~~~l~s~s~-D~~v~iwd~--~~~~~~~~~~---~h~~~v~~v--~~-s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSS-DKSVKVWDV--GTRTCVHTFF---DHQDQVWGV--KY-NGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEECTTSSEEEEEET-TSCEEEEET--TTTEEEEEEC---CCSSCEEEE--EE-CTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEECCCCCEEEEEeC-CCcEEEEeC--CCCEEEEEEc---CCCCcEEEE--EE-CCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999888 999999999 4444433333 666667666 66 8999999999999999999963
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=246.47 Aligned_cols=216 Identities=13% Similarity=0.066 Sum_probs=181.8
Q ss_pred eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEE
Q 036605 9 LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSL 88 (340)
Q Consensus 9 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l 88 (340)
+...|. +|...|++++|+|+++ +|++|+.||+|++||+.++..+..+.. |...|.+++|+|++++|
T Consensus 5 ~~~~~~----~h~~~V~~~~fsp~~~---------~l~s~~~dg~v~lWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 70 (304)
T 2ynn_A 5 IKKTFS----NRSDRVKGIDFHPTEP---------WVLTTLYSGRVELWNYETQVEVRSIQV-TETPVRAGKFIARKNWI 70 (304)
T ss_dssp CEEEEE----EECSCEEEEEECSSSS---------EEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEE
T ss_pred eEEeec----CCCCceEEEEECCCCC---------EEEEEcCCCcEEEEECCCCceeEEeec-cCCcEEEEEEeCCCCEE
Confidence 455676 8999999999999999 999999999999999999999989988 99999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCc-eeEEeecCCCCeEEEEECC
Q 036605 89 HVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGE-EVLKFSDDVGPLQYVSASD 165 (340)
Q Consensus 89 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~-~~~~~~~~~~~v~~~~~s~ 165 (340)
++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.++++++.+ |++||++++. ....+.+|...|.+++|+|
T Consensus 71 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECT
T ss_pred EEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECC
Confidence 999999999999999999999999999999999999999999987655 9999998874 4467889999999999999
Q ss_pred -CCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCC
Q 036605 166 -GAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKT 244 (340)
Q Consensus 166 -~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~ 244 (340)
++.+|++++. |+.|++||++ .... ...+...+...+..+.... .+++.+|++++.||.|++||+.+++.+..+
T Consensus 151 ~~~~~l~sgs~-D~~v~iwd~~--~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~ 224 (304)
T 2ynn_A 151 KDPSTFASGCL-DRTVKVWSLG--QSTP--NFTLTTGQERGVNYVDYYP-LPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (304)
T ss_dssp TCTTEEEEEET-TSEEEEEETT--CSSC--SEEEECCCTTCEEEEEECC-STTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeC-CCeEEEEECC--CCCc--cceeccCCcCcEEEEEEEE-cCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence 5788898887 9999999984 3222 1222223433343332233 468899999999999999999887655533
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=245.70 Aligned_cols=221 Identities=14% Similarity=0.156 Sum_probs=189.6
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.++..+..+. .|...|.+++|+|+++ +|++|+.|++|++||+.+++.+..+.+ |.+.|++++
T Consensus 39 lWd~~~~~~~~~~~----~~~~~v~~~~~~~~~~---------~l~s~s~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~ 104 (304)
T 2ynn_A 39 LWNYETQVEVRSIQ----VTETPVRAGKFIARKN---------WIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIA 104 (304)
T ss_dssp EEETTTTEEEEEEE----CCSSCEEEEEEEGGGT---------EEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEE
T ss_pred EEECCCCceeEEee----ccCCcEEEEEEeCCCC---------EEEEECCCCEEEEEECCCCcEEEEEeC-CCCcEEEEE
Confidence 69999999988888 7899999999999999 999999999999999999999999998 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCC-eEEEEeecCCCCeeEEEEcc-CCCEEEEecCc--EEEEECCCCceeEEe-ecCC
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMG-EVIREFKASEKPISSSAFLC-EEKIFALASSE--VRILSLENGEEVLKF-SDDV 155 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~~--i~i~d~~~~~~~~~~-~~~~ 155 (340)
|+|++.+|++|+.|+.|++||+.++ .....+.+|...|.+++|+| ++..+++++.+ |++||+.++.....+ ..|.
T Consensus 105 ~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~ 184 (304)
T 2ynn_A 105 VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred EcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCc
Confidence 9999999999999999999999887 45567889999999999999 67888886544 999999888766665 4566
Q ss_pred CCeEEEEECC--CCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 156 GPLQYVSASD--GAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 156 ~~v~~~~~s~--~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
..+..+.|+| ++.+|++++. |+.|++||+ .+++....+. +|...+..+ .| +|++.+|++|+.||.|++|
T Consensus 185 ~~v~~~~~~~~~~~~~l~s~s~-D~~i~iWd~--~~~~~~~~~~---~h~~~v~~~--~~-~p~~~~l~s~s~Dg~i~iW 255 (304)
T 2ynn_A 185 RGVNYVDYYPLPDKPYMITASD-DLTIKIWDY--QTKSCVATLE---GHMSNVSFA--VF-HPTLPIIISGSEDGTLKIW 255 (304)
T ss_dssp TCEEEEEECCSTTCCEEEEEET-TSEEEEEET--TTTEEEEEEE---CCSSCEEEE--EE-CSSSSEEEEEETTSCEEEE
T ss_pred CcEEEEEEEEcCCCCEEEEEcC-CCeEEEEeC--CCCccceeeC---CCCCCEEEE--EE-CCCCCEEEEEcCCCeEEEE
Confidence 8899999976 6789999888 999999999 4444433333 666666655 56 8999999999999999999
Q ss_pred ECCCCCccCCC
Q 036605 234 DLKTVSQDEKT 244 (340)
Q Consensus 234 d~~~~~~~~~~ 244 (340)
|+.+++....+
T Consensus 256 d~~~~~~~~~~ 266 (304)
T 2ynn_A 256 NSSTYKVEKTL 266 (304)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCceeeec
Confidence 99887665533
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=251.88 Aligned_cols=218 Identities=12% Similarity=0.033 Sum_probs=178.8
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.+++.+..+.....+|...|++++|+|+++ +|++|+.||+|++||+.+++.+..+.+ |.+.|++++
T Consensus 107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~---------~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~~V~~~~ 176 (344)
T 4gqb_B 107 LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT---------QAVSGSKDICIKVWDLAQQVVLSSYRA-HAAQVTCVA 176 (344)
T ss_dssp EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEE
T ss_pred EEeccCCCceeEeeccccCCCCCEEEEEECCCCC---------EEEEEeCCCeEEEEECCCCcEEEEEcC-cCCceEEEE
Confidence 6999988765433211127999999999999999 999999999999999999999999998 999999999
Q ss_pred EecCCC-EEEEEeCCCcEEEEeCCCCeEEEEee--cCCCCeeEEEEccC-CCEEEEec--CcEEEEECCCCceeEEeecC
Q 036605 81 FAKKGR-SLHVVGTNGMASEMKSEMGEVIREFK--ASEKPISSSAFLCE-EKIFALAS--SEVRILSLENGEEVLKFSDD 154 (340)
Q Consensus 81 ~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~l~~~~~-~~~l~~~~--~~i~i~d~~~~~~~~~~~~~ 154 (340)
|++++. .|++++.|+.|++||+++++....+. .+...+.+++|+|+ +.++++++ +.|++||+++++.+..+.+|
T Consensus 177 ~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h 256 (344)
T 4gqb_B 177 ASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH 256 (344)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC
T ss_pred ecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC
Confidence 999885 78999999999999999998887764 34557899999995 56777754 44999999999999999999
Q ss_pred CCCeEEEEECCCCC-EEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCC-EEEEEeCCCcEEE
Q 036605 155 VGPLQYVSASDGAK-IIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGT-VILAVAESGVAYS 232 (340)
Q Consensus 155 ~~~v~~~~~s~~~~-~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~s~dg~i~v 232 (340)
...|.+++|+|++. +|++++. |++|+|||+ ..++.. ...+|...+..+ .| +|++. +|++++.||.|++
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~-D~~i~vwd~--~~~~~~----~~~~H~~~V~~v--~~-sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSE-DCSLAVLDS--SLSELF----RSQAHRDFVRDA--TW-SPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEET-TSCEEEECT--TCCEEE----EECCCSSCEEEE--EE-CSSSTTEEEEEETTSCEEE
T ss_pred CCCEEEEEEccCCCeEEEEEeC-CCeEEEEEC--CCCcEE----EEcCCCCCEEEE--EE-eCCCCeEEEEEcCCCeEEE
Confidence 99999999999984 6777777 999999998 444322 223787778777 77 77765 5778999999999
Q ss_pred EECCCC
Q 036605 233 WDLKTV 238 (340)
Q Consensus 233 wd~~~~ 238 (340)
|++.+.
T Consensus 327 w~v~~~ 332 (344)
T 4gqb_B 327 HVVPTE 332 (344)
T ss_dssp EECCC-
T ss_pred EECCCC
Confidence 999764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=254.26 Aligned_cols=213 Identities=13% Similarity=0.163 Sum_probs=191.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.+++++..+. +|...|++++|+|++. +|++|+.|++|++||+.++..+..+.+ |...|.+++
T Consensus 176 iwd~~~~~~~~~~~----~h~~~V~~v~~~p~~~---------~l~s~s~D~~i~~wd~~~~~~~~~~~~-h~~~v~~~~ 241 (410)
T 1vyh_C 176 LWDFQGFECIRTMH----GHDHNVSSVSIMPNGD---------HIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVR 241 (410)
T ss_dssp EEETTSSCEEECCC----CCSSCEEEEEECSSSS---------EEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEE
T ss_pred EEeCCCCceeEEEc----CCCCCEEEEEEeCCCC---------EEEEEeCCCeEEEEECCCCcEEEEEeC-CCccEEEEE
Confidence 69999999888887 8999999999999999 999999999999999999999999988 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccC--------------------CCEEEEecCc--EE
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCE--------------------EKIFALASSE--VR 138 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~--------------------~~~l~~~~~~--i~ 138 (340)
|+|++.+|++|+.|+.|++||+.+++....+..|...|.+++|+|+ +.++++++.+ |+
T Consensus 242 ~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence 9999999999999999999999999999999999999999999996 6678886555 99
Q ss_pred EEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCC
Q 036605 139 ILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDG 218 (340)
Q Consensus 139 i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (340)
+||+.++..+..+.+|...|.+++|+|++.+|++++. |+.|++||+ ..++....+. .|...+..+ .| +|++
T Consensus 322 iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~~i~vwd~--~~~~~~~~~~---~h~~~v~~l--~~-~~~~ 392 (410)
T 1vyh_C 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLRVWDY--KNKRCMKTLN---AHEHFVTSL--DF-HKTA 392 (410)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET-TTEEEEECC--TTSCCCEEEE---CCSSCEEEE--EE-CSSS
T ss_pred EEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEEC--CCCceEEEEc---CCCCcEEEE--EE-cCCC
Confidence 9999999999999999999999999999999999888 999999998 4444444333 677667666 66 8999
Q ss_pred CEEEEEeCCCcEEEEECC
Q 036605 219 TVILAVAESGVAYSWDLK 236 (340)
Q Consensus 219 ~~l~~~s~dg~i~vwd~~ 236 (340)
.+|++|+.||.|++|+++
T Consensus 393 ~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SCEEEEETTSEEEEEC--
T ss_pred CEEEEEeCCCcEEEEeCC
Confidence 999999999999999863
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=243.07 Aligned_cols=217 Identities=13% Similarity=0.164 Sum_probs=186.1
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe----eEEEecCCCCCCe
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE----MKWKSTGRHPGGL 76 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~~h~~~v 76 (340)
|||..+++....+. .|...|.+++|+|+++ +|++|+.|+.|++|++.+++ ....+.+ |.+.|
T Consensus 81 iWd~~~~~~~~~~~----~~~~~v~~~~~s~~~~---------~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~-h~~~v 146 (340)
T 1got_B 81 IWDSYTTNKVHAIP----LRSSWVMTCAYAPSGN---------YVACGGLDNICSIYNLKTREGNVRVSRELAG-HTGYL 146 (340)
T ss_dssp EEETTTCCEEEEEE----CSSSCEEEEEECTTSS---------EEEEEETTCEEEEEETTTCSBSCEEEEEEEC-CSSCE
T ss_pred EEECCCCCcceEee----cCCccEEEEEECCCCC---------EEEEEeCCCeEEEEECccCCCcceeEEEecC-CCccE
Confidence 69999999888887 7889999999999999 99999999999999998753 4556677 99999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecC
Q 036605 77 AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDD 154 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~ 154 (340)
.++.|++++ .+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.++++++.+ |++||++++..+..+.+|
T Consensus 147 ~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h 225 (340)
T 1got_B 147 SCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225 (340)
T ss_dssp EEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred EEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence 999999876 58899999999999999999999999999999999999999999886544 999999999999999999
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCC---eeeeeecCCCCCCCCEEEEEeCCCcEE
Q 036605 155 VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSP---VAIDCKNSPNGEDGTVILAVAESGVAY 231 (340)
Q Consensus 155 ~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~s~dg~i~ 231 (340)
...|.+++|+|++.+|++++. |+.|++||++ .++... ...+.. .+..+ .| +|++.+|++|+.||.|+
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~-d~~v~iwd~~--~~~~~~----~~~~~~~~~~v~~~--~~-s~~g~~l~~g~~d~~i~ 295 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSD-DATCRLFDLR--ADQELM----TYSHDNIICGITSV--SF-SKSGRLLLAGYDDFNCN 295 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEET-TSCEEEEETT--TTEEEE----EECCTTCCSCEEEE--EE-CTTSSEEEEEETTSEEE
T ss_pred cCCEEEEEEcCCCCEEEEEcC-CCcEEEEECC--CCcEEE----EEccCCcccceEEE--EE-CCCCCEEEEECCCCeEE
Confidence 999999999999999999888 9999999984 332211 112222 23333 55 89999999999999999
Q ss_pred EEECCCCCccC
Q 036605 232 SWDLKTVSQDE 242 (340)
Q Consensus 232 vwd~~~~~~~~ 242 (340)
+||+.+.+...
T Consensus 296 vwd~~~~~~~~ 306 (340)
T 1got_B 296 VWDALKADRAG 306 (340)
T ss_dssp EEETTTCCEEE
T ss_pred EEEcccCcEee
Confidence 99998765544
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=240.59 Aligned_cols=226 Identities=19% Similarity=0.265 Sum_probs=189.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||..+++....+. +|...|.+++|+|+++ +|++|+.||.|++||+.+++.+..+.+ |...|.+++
T Consensus 49 iw~~~~~~~~~~~~----~h~~~v~~~~~~~~~~---------~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~ 114 (312)
T 4ery_A 49 IWGAYDGKFEKTIS----GHKLGISDVAWSSDSN---------LLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCN 114 (312)
T ss_dssp EEETTTCCEEEEEC----CCSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEE
T ss_pred EEeCCCcccchhhc----cCCCceEEEEEcCCCC---------EEEEECCCCEEEEEECCCCcEEEEEcC-CCCCEEEEE
Confidence 68999998888887 8899999999999999 999999999999999999999989988 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEe-ecCCCC
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKF-SDDVGP 157 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~-~~~~~~ 157 (340)
|+|++++|++++.|+.|++||+.+++.+..+..|..+|.+++|+|++.++++++.+ |++||+++++.+..+ ..+...
T Consensus 115 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 194 (312)
T 4ery_A 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194 (312)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc
Confidence 99999999999999999999999999999999999999999999999999886554 999999999887766 455678
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 158 LQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
+..++|+|++++|++++. |+.|++||++ .++....+. .|......+...+..+++.+|++|+.||.|++||+.+
T Consensus 195 ~~~~~~~~~~~~l~~~~~-d~~i~iwd~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATL-DNTLKLWDYS--KGKCLKTYT---GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp EEEEEECTTSSEEEEEET-TTEEEEEETT--TTEEEEEEC---SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred eEEEEECCCCCEEEEEcC-CCeEEEEECC--CCcEEEEEE---ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence 999999999999999888 9999999983 433322222 3322221111122247789999999999999999988
Q ss_pred CCccCCCCC
Q 036605 238 VSQDEKTNP 246 (340)
Q Consensus 238 ~~~~~~~~p 246 (340)
.+.+..+..
T Consensus 269 ~~~~~~~~~ 277 (312)
T 4ery_A 269 KEIVQKLQG 277 (312)
T ss_dssp CCEEEEECC
T ss_pred chhhhhhhc
Confidence 776654443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-33 Score=238.44 Aligned_cols=210 Identities=18% Similarity=0.228 Sum_probs=180.9
Q ss_pred CccCCCCc----eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCe
Q 036605 1 IWSTNDGS----LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGL 76 (340)
Q Consensus 1 vwd~~~g~----~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v 76 (340)
|||+.+++ ....+. +|...|.|+.|++++. +++|+.|++|++||+.+++....+.+ |.+.|
T Consensus 123 iw~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~----------l~s~s~d~~i~~wd~~~~~~~~~~~~-h~~~v 187 (340)
T 1got_B 123 IYNLKTREGNVRVSRELA----GHTGYLSCCRFLDDNQ----------IVTSSGDTTCALWDIETGQQTTTFTG-HTGDV 187 (340)
T ss_dssp EEETTTCSBSCEEEEEEE----CCSSCEEEEEEEETTE----------EEEEETTSCEEEEETTTTEEEEEECC-CSSCE
T ss_pred EEECccCCCcceeEEEec----CCCccEEEEEECCCCc----------EEEEECCCcEEEEECCCCcEEEEEcC-CCCce
Confidence 57776553 334555 7899999999998877 88999999999999999999989988 99999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeec-
Q 036605 77 AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSD- 153 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~- 153 (340)
.+++|+|++++|++|+.|+.|++||++++..+..+.+|...|.+++|+|++.++++++.+ |++||+++++.+..+..
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~ 267 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC
Confidence 999999999999999999999999999999999999999999999999999999987654 99999999887766642
Q ss_pred -CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEE
Q 036605 154 -DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYS 232 (340)
Q Consensus 154 -~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~v 232 (340)
+...|.+++|+|++++|++++. |+.|++||+ ..++....+. +|...+..+ .| +|++.+|++|+.||.|++
T Consensus 268 ~~~~~v~~~~~s~~g~~l~~g~~-d~~i~vwd~--~~~~~~~~~~---~h~~~v~~~--~~-s~dg~~l~s~s~D~~i~i 338 (340)
T 1got_B 268 NIICGITSVSFSKSGRLLLAGYD-DFNCNVWDA--LKADRAGVLA---GHDNRVSCL--GV-TDDGMAVATGSWDSFLKI 338 (340)
T ss_dssp TCCSCEEEEEECTTSSEEEEEET-TSEEEEEET--TTCCEEEEEE---CCSSCEEEE--EE-CTTSSCEEEEETTSCEEE
T ss_pred CcccceEEEEECCCCCEEEEECC-CCeEEEEEc--ccCcEeeEee---cCCCcEEEE--EE-cCCCCEEEEEcCCccEEe
Confidence 3357999999999999999888 999999998 3444333333 677777666 66 899999999999999999
Q ss_pred EE
Q 036605 233 WD 234 (340)
Q Consensus 233 wd 234 (340)
||
T Consensus 339 Wd 340 (340)
T 1got_B 339 WN 340 (340)
T ss_dssp EC
T ss_pred cC
Confidence 96
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=244.15 Aligned_cols=218 Identities=12% Similarity=0.084 Sum_probs=174.1
Q ss_pred CccCCCCceee--eeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEE
Q 036605 1 IWSTNDGSLLA--EWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~ 78 (340)
|||+.+++... .+.. .+|...|++++|+|+++ +|++|+.||.|++||+.+++.+..+.+ |.+.|++
T Consensus 119 lWd~~~~~~~~~~~~~~--~~h~~~V~~v~~spdg~---------~l~sgs~dg~v~iwd~~~~~~~~~~~~-h~~~v~~ 186 (357)
T 4g56_B 119 LWEILEKESLLVNKFAK--YEHDDIVKTLSVFSDGT---------QAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNC 186 (357)
T ss_dssp EC--------CCCCEEE--CCCSSCEEEEEECSSSS---------EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEE
T ss_pred EeeccccceeEEEeecc--CCCCCCEEEEEECCCCC---------EEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEE
Confidence 68988876543 2222 27899999999999999 999999999999999999999999988 9999999
Q ss_pred EEEecCCC-EEEEEeCCCcEEEEeCCCCeEEEEee--cCCCCeeEEEEccCC-CEEEEecC--cEEEEECCCCceeEEee
Q 036605 79 LAFAKKGR-SLHVVGTNGMASEMKSEMGEVIREFK--ASEKPISSSAFLCEE-KIFALASS--EVRILSLENGEEVLKFS 152 (340)
Q Consensus 79 v~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~l~~~~~~-~~l~~~~~--~i~i~d~~~~~~~~~~~ 152 (340)
++|++++. .+++++.|+.|++||+++++....+. .+...+.+++|+|++ .+|++++. .|++||+++++.+..+.
T Consensus 187 v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~ 266 (357)
T 4g56_B 187 VAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA 266 (357)
T ss_dssp EEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC
T ss_pred EEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe
Confidence 99999875 78999999999999999988765543 456679999999985 56777544 49999999999999999
Q ss_pred cCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCC-CCCEEEEEeCCCcE
Q 036605 153 DDVGPLQYVSASDGAK-IIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGE-DGTVILAVAESGVA 230 (340)
Q Consensus 153 ~~~~~v~~~~~s~~~~-~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~s~dg~i 230 (340)
+|...|.+++|+|++. +|++++. |++|+|||+ .+++.. ..++|...+..+ .| +| ++.+|++++.||.|
T Consensus 267 ~~~~~v~~l~~sp~~~~~lasgs~-D~~i~iwd~--~~~~~~----~~~~H~~~V~~v--af-sP~d~~~l~s~s~Dg~v 336 (357)
T 4g56_B 267 VHSQNITGLAYSYHSSPFLASISE-DCTVAVLDA--DFSEVF----RDLSHRDFVTGV--AW-SPLDHSKFTTVGWDHKV 336 (357)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEET-TSCEEEECT--TSCEEE----EECCCSSCEEEE--EE-CSSSTTEEEEEETTSCE
T ss_pred ccceeEEEEEEcCCCCCEEEEEeC-CCEEEEEEC--CCCcEe----EECCCCCCEEEE--EE-eCCCCCEEEEEcCCCeE
Confidence 9999999999999874 6777776 999999998 444332 223677777777 77 66 78999999999999
Q ss_pred EEEECCCCCc
Q 036605 231 YSWDLKTVSQ 240 (340)
Q Consensus 231 ~vwd~~~~~~ 240 (340)
++|++....+
T Consensus 337 ~iW~~~~~~~ 346 (357)
T 4g56_B 337 LHHHLPSEGR 346 (357)
T ss_dssp EEEECC----
T ss_pred EEEECCCCCc
Confidence 9999976433
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=239.23 Aligned_cols=227 Identities=16% Similarity=0.228 Sum_probs=183.0
Q ss_pred CccCCCCceeeeeeCCCC--------------CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE
Q 036605 1 IWSTNDGSLLAEWKQPDG--------------EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW 66 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~--------------~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~ 66 (340)
||+..+|+.+..+..... .+...|++++|+|+++ +|++|+.||.|++||+.+++...
T Consensus 89 i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~---------~l~s~~~d~~i~iwd~~~~~~~~ 159 (393)
T 1erj_A 89 VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK---------FLATGAEDRLIRIWDIENRKIVM 159 (393)
T ss_dssp EEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC---------EEEEEcCCCeEEEEECCCCcEEE
Confidence 588888888776652100 1223499999999999 99999999999999999999888
Q ss_pred EecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEcc-CCCEEEEecCc--EEEEECC
Q 036605 67 KSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLC-EEKIFALASSE--VRILSLE 143 (340)
Q Consensus 67 ~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~~--i~i~d~~ 143 (340)
.+.+ |...|.+++|+|++..|++++.|+.|++||+.+++....+. +...+.+++++| ++.++++++.+ |++||++
T Consensus 160 ~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~ 237 (393)
T 1erj_A 160 ILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237 (393)
T ss_dssp EECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETT
T ss_pred EEcc-CCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 8888 99999999999999999999999999999999998877775 456799999999 89999886544 9999999
Q ss_pred CCceeEEe-------ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCcc------CC-ceeeecCCCeeeee
Q 036605 144 NGEEVLKF-------SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVN------KG-PALSMRHSPVAIDC 209 (340)
Q Consensus 144 ~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~------~~-~~~~~~~~~~~~~~ 209 (340)
+++.+..+ .+|...|.+++|+|++.+|++++. |+.|++||++....... .. .....+|...+..+
T Consensus 238 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 316 (393)
T 1erj_A 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 316 (393)
T ss_dssp TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET-TSEEEEEEC---------------CEEEEEECCSSCEEEE
T ss_pred CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC-CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEE
Confidence 99877666 578899999999999999999888 99999999852211000 00 11122566666655
Q ss_pred ecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 210 KNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 210 ~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.+ ++++.+|++|+.||.|++||+.+++.+.
T Consensus 317 --~~-~~~~~~l~sgs~D~~v~iwd~~~~~~~~ 346 (393)
T 1erj_A 317 --AT-TQNDEYILSGSKDRGVLFWDKKSGNPLL 346 (393)
T ss_dssp --EE-CGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred --EE-CCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 56 7899999999999999999998876554
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=232.14 Aligned_cols=206 Identities=16% Similarity=0.224 Sum_probs=180.3
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
+|...|++++|+|+++ +|++|+.||.|++|++.+++....+.+ |...|.+++|+|++++|++++.|+.|+
T Consensus 21 gh~~~v~~~~~s~~~~---------~l~s~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGE---------WLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ccCCcEEEEEECCCCC---------EEEEeeCCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 8999999999999999 999999999999999999998888888 999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
+||+.+++.+..+..|...|.+++|+|++.++++++.+ |++||+++++.+..+..|..+|.+++|+|++.+|++++.
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 99999999999999999999999999999999986554 999999999999999999999999999999999999888
Q ss_pred CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 177 EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
|+.|++||++ .++....+ ...+...+..+ .+ +|++.+|++++.||.|++||+.+++.+.
T Consensus 170 d~~i~~wd~~--~~~~~~~~--~~~~~~~~~~~--~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 170 DGLCRIWDTA--SGQCLKTL--IDDDNPPVSFV--KF-SPNGKYILAATLDNTLKLWDYSKGKCLK 228 (312)
T ss_dssp TSCEEEEETT--TCCEEEEE--CCSSCCCEEEE--EE-CTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCcEEEEECC--CCceeeEE--eccCCCceEEE--EE-CCCCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 9999999984 33322211 11233333333 44 8999999999999999999998765444
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=231.36 Aligned_cols=224 Identities=12% Similarity=0.139 Sum_probs=179.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCCCeEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~ 78 (340)
|||+.++......... .+|...|++++|+|+++ +|++|+.|++|++||+..+. ....+.+ |.+.|.+
T Consensus 42 iw~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~g~---------~l~s~s~D~~v~iw~~~~~~~~~~~~~~~-h~~~v~~ 110 (345)
T 3fm0_A 42 IWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGN---------YLASASFDATTCIWKKNQDDFECVTTLEG-HENEVKS 110 (345)
T ss_dssp EEEEETTEEEEEEEEC-SSCSSCEEEEEECTTSS---------EEEEEETTSCEEEEEECCC-EEEEEEECC-CSSCEEE
T ss_pred EEEcCCCcceeeeeec-cccCCcEEEEEECCCCC---------EEEEEECCCcEEEEEccCCCeEEEEEccC-CCCCceE
Confidence 5888777644322111 27999999999999999 99999999999999998774 4667777 9999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCe---EEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCce--eEEe
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSEMGE---VIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEE--VLKF 151 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~--~~~~ 151 (340)
++|+|++++|++++.|+.|++||+.++. .+..+..|...|.+++|+|++.+|++++.+ |++||+.++.. ...+
T Consensus 111 v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~ 190 (345)
T 3fm0_A 111 VAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL 190 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe
Confidence 9999999999999999999999998763 455677899999999999999999886554 99999988753 4678
Q ss_pred ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCC-----------ceeeecCCCeeeeeecCCCCCCCCE
Q 036605 152 SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKG-----------PALSMRHSPVAIDCKNSPNGEDGTV 220 (340)
Q Consensus 152 ~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (340)
.+|...|.+++|+|++++|++++. |+.|+||+........... ..+...|...+..+ .| ++++..
T Consensus 191 ~~h~~~v~~l~~sp~g~~l~s~s~-D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v--~~-~~~~~~ 266 (345)
T 3fm0_A 191 EGHESTVWSLAFDPSGQRLASCSD-DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDI--AW-CQLTGA 266 (345)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEET-TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEE--EE-CTTTCC
T ss_pred cCCCCceEEEEECCCCCEEEEEeC-CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEE--EE-ecCCCE
Confidence 899999999999999999999888 9999999974322111100 01111244555555 56 788999
Q ss_pred EEEEeCCCcEEEEECCCCC
Q 036605 221 ILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 221 l~~~s~dg~i~vwd~~~~~ 239 (340)
|++++.|+.|++|+.....
T Consensus 267 l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 267 LATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp EEEEETTSCEEEEEECTTS
T ss_pred EEEEeCCCeEEEEEeCCCC
Confidence 9999999999999987643
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=235.46 Aligned_cols=221 Identities=11% Similarity=0.104 Sum_probs=183.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC------eeEEEecCCCCC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG------EMKWKSTGRHPG 74 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~------~~~~~~~~~h~~ 74 (340)
|||..++.....+. .|...|.+++|+|++. +|++|+.|+.+.+|++... .....+.. |.+
T Consensus 90 vWd~~~~~~~~~~~----~~~~~v~~~~~sp~g~---------~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~-h~~ 155 (354)
T 2pbi_B 90 VWDSFTTNKEHAVT----MPCTWVMACAYAPSGC---------AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM-HTN 155 (354)
T ss_dssp EEETTTCCEEEEEE----CSSSCCCEEEECTTSS---------EEEEESTTSEEEEEECCCCTTCCSGGGCEEEEE-CSS
T ss_pred EEECCCCCcceEEe----cCCCCEEEEEECCCCC---------EEEEeeCCCCEEEEEEeccccccccccceeeec-cCC
Confidence 69999998888877 6788999999999999 9999999999999998643 23445555 999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEcc--CCCEEEEecC--cEEEEECCCCceeEE
Q 036605 75 GLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLC--EEKIFALASS--EVRILSLENGEEVLK 150 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~--~i~i~d~~~~~~~~~ 150 (340)
.|.+++|+|++..|++++.|+.|++||+.+++.+..+.+|...|.+++++| ++.++++++. .|++||+++++.+..
T Consensus 156 ~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~ 235 (354)
T 2pbi_B 156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA 235 (354)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 999999999999999999999999999999999999999999999999988 4678888654 499999999999999
Q ss_pred eecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcE
Q 036605 151 FSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVA 230 (340)
Q Consensus 151 ~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i 230 (340)
+..|...|.+++|+|++.+|++++. |++|++||++ .......+. ...+...+..+ .| ++++.+|++|+.||.|
T Consensus 236 ~~~h~~~v~~v~~~p~~~~l~s~s~-D~~v~lwd~~--~~~~~~~~~-~~~~~~~~~~~--~~-s~~g~~l~~g~~d~~i 308 (354)
T 2pbi_B 236 FETHESDVNSVRYYPSGDAFASGSD-DATCRLYDLR--ADREVAIYS-KESIIFGASSV--DF-SLSGRLLFAGYNDYTI 308 (354)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETT--TTEEEEEEC-CTTCCSCEEEE--EE-CTTSSEEEEEETTSCE
T ss_pred ecCCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEECC--CCcEEEEEc-CCCcccceeEE--EE-eCCCCEEEEEECCCcE
Confidence 9999999999999999999999888 9999999984 322211111 00111122222 44 8999999999999999
Q ss_pred EEEECCCCCccC
Q 036605 231 YSWDLKTVSQDE 242 (340)
Q Consensus 231 ~vwd~~~~~~~~ 242 (340)
++||+.++..+.
T Consensus 309 ~vwd~~~~~~~~ 320 (354)
T 2pbi_B 309 NVWDVLKGSRVS 320 (354)
T ss_dssp EEEETTTCSEEE
T ss_pred EEEECCCCceEE
Confidence 999998776544
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=236.40 Aligned_cols=202 Identities=8% Similarity=0.001 Sum_probs=165.1
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEE----ecCCCCCCeEEEEEecCCCEEEEEeCCC
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWK----STGRHPGGLAGLAFAKKGRSLHVVGTNG 95 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~----~~~~h~~~v~~v~~~~~~~~l~s~~~dg 95 (340)
+...|.+++|+|+++ |++|+.||+|+|||+.+++.... +.+ |.+.|++++|+|++++|++|+.|+
T Consensus 81 ~~~~v~~~~~s~d~~----------l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~-H~~~V~~v~~spdg~~l~sgs~d~ 149 (344)
T 4gqb_B 81 TEAGVADLTWVGERG----------ILVASDSGAVELWELDENETLIVSKFCKYE-HDDIVSTVSVLSSGTQAVSGSKDI 149 (344)
T ss_dssp ESSCEEEEEEETTTE----------EEEEETTSEEEEEEECTTSSCEEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCCEEEEEEeCCCe----------EEEEECCCEEEEEeccCCCceeEeeccccC-CCCCEEEEEECCCCCEEEEEeCCC
Confidence 456799999999866 88999999999999998874433 335 999999999999999999999999
Q ss_pred cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC-EEEEec--CcEEEEECCCCceeEEe--ecCCCCeEEEEECCCC-CE
Q 036605 96 MASEMKSEMGEVIREFKASEKPISSSAFLCEEK-IFALAS--SEVRILSLENGEEVLKF--SDDVGPLQYVSASDGA-KI 169 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~--~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~s~~~-~~ 169 (340)
.|++||+.+++.+..+.+|...|.+++|+|++. ++++++ +.|++||+++++....+ ..|...+.+++|+|++ .+
T Consensus 150 ~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 229 (344)
T 4gqb_B 150 CIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV 229 (344)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE
T ss_pred eEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcc
Confidence 999999999999999999999999999999985 666654 45999999999888776 3455678999999865 56
Q ss_pred EEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCC-CEEEEEeCCCcEEEEECCCCCcc
Q 036605 170 IITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDG-TVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 170 l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
|++++. |+.|++||+ .+++....+. .|...+..+ .| +|++ .+|++|+.||.|+|||+.+++..
T Consensus 230 l~sg~~-dg~v~~wd~--~~~~~~~~~~---~h~~~v~~v--~f-sp~g~~~lasgs~D~~i~vwd~~~~~~~ 293 (344)
T 4gqb_B 230 FVFGDE-NGTVSLVDT--KSTSCVLSSA---VHSQCVTGL--VF-SPHSVPFLASLSEDCSLAVLDSSLSELF 293 (344)
T ss_dssp EEEEET-TSEEEEEES--CC--CCEEEE---CCSSCEEEE--EE-CSSSSCCEEEEETTSCEEEECTTCCEEE
T ss_pred eEEecc-CCcEEEEEC--CCCcEEEEEc---CCCCCEEEE--EE-ccCCCeEEEEEeCCCeEEEEECCCCcEE
Confidence 667666 999999999 4454444443 677777766 66 7777 57899999999999999876543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=233.32 Aligned_cols=217 Identities=17% Similarity=0.211 Sum_probs=176.5
Q ss_pred CccCCC-----CceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCC
Q 036605 1 IWSTND-----GSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGG 75 (340)
Q Consensus 1 vwd~~~-----g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~ 75 (340)
|||+.. +..+..+. +|...|++++|+|+++ +|++|+.|++|++||+.+++....+.+ |.+.
T Consensus 44 ~W~~~~~~~~~~~~~~~~~----~h~~~v~~~~~s~dg~---------~l~s~s~D~~v~~wd~~~~~~~~~~~~-h~~~ 109 (319)
T 3frx_A 44 SWKLTGDDQKFGVPVRSFK----GHSHIVQDCTLTADGA---------YALSASWDKTLRLWDVATGETYQRFVG-HKSD 109 (319)
T ss_dssp EEEEEEETTEEEEEEEEEE----CCSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTTEEEEEEEC-CSSC
T ss_pred EecCCCCCccccccceEEe----CCcccEEEEEECCCCC---------EEEEEeCCCEEEEEECCCCCeeEEEcc-CCCc
Confidence 476643 23345666 8999999999999999 999999999999999999999999998 9999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCC------CEEEEecCc--EEEEECCCCce
Q 036605 76 LAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEE------KIFALASSE--VRILSLENGEE 147 (340)
Q Consensus 76 v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~------~~l~~~~~~--i~i~d~~~~~~ 147 (340)
|.+++|+|++..|++++.|+.|++||+. +..+..+.+|...+.++.++|.+ ..+++++.+ |++||+.+++.
T Consensus 110 v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 188 (319)
T 3frx_A 110 VMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188 (319)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh
Confidence 9999999999999999999999999997 55677888899999999999854 477775544 99999999988
Q ss_pred eEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCce-------eee--------------------
Q 036605 148 VLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA-------LSM-------------------- 200 (340)
Q Consensus 148 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~-------------------- 200 (340)
...+.+|...|.+++|+|++++|++++. |+.|++||++ .++....+. +.+
T Consensus 189 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~-dg~i~iwd~~--~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~ 265 (319)
T 3frx_A 189 EADFIGHNSNINTLTASPDGTLIASAGK-DGEIMLWNLA--AKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265 (319)
T ss_dssp EEEECCCCSCEEEEEECTTSSEEEEEET-TCEEEEEETT--TTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEE
T ss_pred heeecCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECC--CCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEe
Confidence 8999999999999999999999999888 9999999984 322111000 000
Q ss_pred ------------------cCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 201 ------------------RHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 201 ------------------~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.+...+..+ .| +|+|.+|++|+.||.|++||+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 266 DPQYLVDDLRPEFAGYSKAAEPHAVSL--AW-SADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TTEEEEEEECCCCTTCCGGGCCCEEEE--EE-CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcCeeeeccCccccccccCcCcceeEE--EE-CCCCCEEEEeecCceEEEEEEeec
Confidence 011112222 45 899999999999999999998653
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=229.61 Aligned_cols=210 Identities=14% Similarity=0.170 Sum_probs=177.9
Q ss_pred eeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccC-----CeeEEEecCCCCCCeEEEEEe
Q 036605 9 LLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLT-----GEMKWKSTGRHPGGLAGLAFA 82 (340)
Q Consensus 9 ~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~-----~~~~~~~~~~h~~~v~~v~~~ 82 (340)
+..++. +|...|++++|+|++ + +|++|+.|++|++|++.. +..+..+.+ |...|.+++|+
T Consensus 9 l~~~l~----gH~~~V~~l~~~~~~~~---------~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s 74 (319)
T 3frx_A 9 LRGTLE----GHNGWVTSLATSAGQPN---------LLLSASRDKTLISWKLTGDDQKFGVPVRSFKG-HSHIVQDCTLT 74 (319)
T ss_dssp EEEEEC----CCSSCEEEEEECSSCTT---------EEEEEETTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEEEEEC
T ss_pred EEEEEc----cccceEEEEEccCCCcc---------EEEEecCCccEEEecCCCCCccccccceEEeC-CcccEEEEEEC
Confidence 345565 899999999999976 7 899999999999999864 234567787 99999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEE
Q 036605 83 KKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQY 160 (340)
Q Consensus 83 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~ 160 (340)
|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.++++++.+ |++||++. ..+..+.+|...|.+
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~ 153 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQ 153 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEE
Confidence 999999999999999999999999999999999999999999999999987655 99999974 477888899999999
Q ss_pred EEECCC------CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 161 VSASDG------AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 161 ~~~s~~------~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
+.|.|. +..+++++. |+.|++||++ ..+....+. +|...+..+ .+ +|++.+|++++.||.|++||
T Consensus 154 ~~~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~--~~~~~~~~~---~h~~~v~~~--~~-sp~g~~l~s~~~dg~i~iwd 224 (319)
T 3frx_A 154 VRVVPNEKADDDSVTIISAGN-DKMVKAWNLN--QFQIEADFI---GHNSNINTL--TA-SPDGTLIASAGKDGEIMLWN 224 (319)
T ss_dssp EEECCC------CCEEEEEET-TSCEEEEETT--TTEEEEEEC---CCCSCEEEE--EE-CTTSSEEEEEETTCEEEEEE
T ss_pred EEEccCCCCCCCccEEEEEeC-CCEEEEEECC--cchhheeec---CCCCcEEEE--EE-cCCCCEEEEEeCCCeEEEEE
Confidence 999985 447888777 9999999983 333222222 566666666 66 89999999999999999999
Q ss_pred CCCCCccC
Q 036605 235 LKTVSQDE 242 (340)
Q Consensus 235 ~~~~~~~~ 242 (340)
+.+.+.+.
T Consensus 225 ~~~~~~~~ 232 (319)
T 3frx_A 225 LAAKKAMY 232 (319)
T ss_dssp TTTTEEEE
T ss_pred CCCCcEEE
Confidence 98865544
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=233.76 Aligned_cols=210 Identities=14% Similarity=0.148 Sum_probs=172.3
Q ss_pred ceeeeeeCCCCCCCC-CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE--EecCCCCCCeEEEEEecC
Q 036605 8 SLLAEWKQPDGEPVV-SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW--KSTGRHPGGLAGLAFAKK 84 (340)
Q Consensus 8 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~h~~~v~~v~~~~~ 84 (340)
+++..+. +|.. .|.+++|+|+++ +||+|+.|++|+|||+.++.... .+..+|...|.+++|+|+
T Consensus 6 ~~~~~~~----~h~~~~v~~l~~sp~g~---------~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 72 (345)
T 3fm0_A 6 VLLGRVP----AHPDSRCWFLAWNPAGT---------LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC 72 (345)
T ss_dssp EEEEEEC----CSTTSCEEEEEECTTSS---------CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT
T ss_pred EEeeeec----CCCCCcEEEEEECCCCC---------EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC
Confidence 4455666 5555 999999999999 89999999999999999886432 233349999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe--EEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCc---eeEEeecCCCC
Q 036605 85 GRSLHVVGTNGMASEMKSEMGE--VIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGE---EVLKFSDDVGP 157 (340)
Q Consensus 85 ~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~---~~~~~~~~~~~ 157 (340)
+++|++++.|+.|++||+.++. .+..+.+|...|.+++|+|++++|++++.+ |++||+.++. .+..+..|...
T Consensus 73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC
Confidence 9999999999999999988764 466788999999999999999999987655 9999998764 34567889999
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 158 LQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
|.+++|+|++.+|++++. |+.|++||++ .+..... ....+|...+..+ .| +|++.+|++++.||.|++|+...
T Consensus 153 v~~~~~~p~~~~l~s~s~-d~~i~~w~~~--~~~~~~~-~~~~~h~~~v~~l--~~-sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASY-DDTVKLYREE--EDDWVCC-ATLEGHESTVWSL--AF-DPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp EEEEEECSSSSCEEEEET-TSCEEEEEEE--TTEEEEE-EEECCCSSCEEEE--EE-CTTSSEEEEEETTSCEEEEEEEC
T ss_pred eEEEEECCCCCEEEEEeC-CCcEEEEEec--CCCEEEE-EEecCCCCceEEE--EE-CCCCCEEEEEeCCCeEEEecccc
Confidence 999999999999999888 9999999984 3221111 1112566666666 66 89999999999999999999754
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=249.27 Aligned_cols=222 Identities=14% Similarity=0.182 Sum_probs=181.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecC--------
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTG-------- 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~-------- 70 (340)
|||+.+++....+. +|...|++++|+|+|+ +||+|+.||+|+|||+.+++ ....+..
T Consensus 43 l~~~~~~~~~~~~~----~h~~~v~~~~~spdg~---------~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v 109 (611)
T 1nr0_A 43 TVPVGSLTDTEIYT----EHSHQTTVAKTSPSGY---------YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 109 (611)
T ss_dssp EEETTCSSCCEEEC----CCSSCEEEEEECTTSS---------EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEE
T ss_pred EecCCCcccCeEec----CCCCceEEEEECCCCc---------EEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEE
Confidence 58888888888887 8999999999999999 99999999999999986432 1111111
Q ss_pred -----------------------------------CCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeEEEEeecC
Q 036605 71 -----------------------------------RHPGGLAGLAFAKKGR-SLHVVGTNGMASEMKSEMGEVIREFKAS 114 (340)
Q Consensus 71 -----------------------------------~h~~~v~~v~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 114 (340)
+|.+.|++++|+|++. .|++++.|+.|++||..+++.+..+.+|
T Consensus 110 ~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H 189 (611)
T 1nr0_A 110 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH 189 (611)
T ss_dssp EECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC
T ss_pred EECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccc
Confidence 2677788888888776 5899999999999999999998999999
Q ss_pred CCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEee-------cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 115 EKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFS-------DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 115 ~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
...|.+++|+|++++|++++.+ |++||+.+++.+..+. +|...|.+++|+|++++|++++. |++|++||+
T Consensus 190 ~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~-D~~v~lWd~ 268 (611)
T 1nr0_A 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-DKTIKIWNV 268 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-TSEEEEEET
T ss_pred cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC-CCeEEEEeC
Confidence 9999999999999999986555 9999999998887774 79999999999999999999888 999999998
Q ss_pred cCCCCCccCCc----------------------------------------eeeecCCCeeeeeecCCCCCCCCEEEEEe
Q 036605 186 DISSKTVNKGP----------------------------------------ALSMRHSPVAIDCKNSPNGEDGTVILAVA 225 (340)
Q Consensus 186 ~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~s 225 (340)
+ +++....+ ....+|...+..+ .+ +|++.+|++++
T Consensus 269 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l--~~-spdg~~l~s~s 343 (611)
T 1nr0_A 269 A--TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITAL--SS-SADGKTLFSAD 343 (611)
T ss_dssp T--TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE--EE-CTTSSEEEEEE
T ss_pred C--CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEE--EE-eCCCCEEEEEe
Confidence 4 33221110 0112455555555 56 89999999999
Q ss_pred CCCcEEEEECCCCCcc
Q 036605 226 ESGVAYSWDLKTVSQD 241 (340)
Q Consensus 226 ~dg~i~vwd~~~~~~~ 241 (340)
.||.|++||+.++...
T Consensus 344 ~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 344 AEGHINSWDISTGISN 359 (611)
T ss_dssp TTSCEEEEETTTCCEE
T ss_pred CCCcEEEEECCCCcee
Confidence 9999999999886543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-32 Score=235.91 Aligned_cols=220 Identities=15% Similarity=0.146 Sum_probs=168.9
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAF 81 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 81 (340)
|+..+..+...+. +|...|++++|+|+++ +|++|+.||+|++||+.+++....+.. |...|.+++|
T Consensus 51 ~~~~~~~~~~~l~----gH~~~V~~~~~sp~~~---------~l~s~s~D~~v~iWd~~~~~~~~~~~~-h~~~v~~~~~ 116 (380)
T 3iz6_a 51 FNPTDLVCCRTLQ----GHSGKVYSLDWTPEKN---------WIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAF 116 (380)
T ss_dssp CCCCCCEEEEEEC----CCSSCEEEEEECTTSS---------CEEEEETTSEEEEEETTTTEEEEEEEC-CCTTCCCCEE
T ss_pred cccceeEEeeccc----ccccEEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCccceEEec-CCCCEEEEEE
Confidence 6666667777787 8999999999999998 899999999999999999887777766 7667777777
Q ss_pred ecCCCE--------------------------------------------------EEEEeCCCcEEEEeCCCCeEEEEe
Q 036605 82 AKKGRS--------------------------------------------------LHVVGTNGMASEMKSEMGEVIREF 111 (340)
Q Consensus 82 ~~~~~~--------------------------------------------------l~s~~~dg~i~~wd~~~~~~~~~~ 111 (340)
+|++++ |++|+.|+.|++||+.+++.+..+
T Consensus 117 s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 117 APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196 (380)
T ss_dssp CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe
Confidence 666544 555556666666666666666555
Q ss_pred -----ecCCCCeeEEEEcc-CCCEEEEecCc--EEEEECC-CCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEE
Q 036605 112 -----KASEKPISSSAFLC-EEKIFALASSE--VRILSLE-NGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQV 182 (340)
Q Consensus 112 -----~~~~~~i~~l~~~~-~~~~l~~~~~~--i~i~d~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~i 182 (340)
.+|...+.++++++ ++.++++++.+ |++||++ .++.+..+.+|...|.+++|+|++.+|++++. |++|++
T Consensus 197 ~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-D~~i~l 275 (380)
T 3iz6_a 197 GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD-DGTCRL 275 (380)
T ss_dssp CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS-SSCEEE
T ss_pred ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC-CCeEEE
Confidence 46778899999987 78888886554 9999998 45677889999999999999999999999887 999999
Q ss_pred EEccCCCCCccCCceeee----cCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 036605 183 WRCDISSKTVNKGPALSM----RHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 183 wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
||++ ++.....+.... .+.+.+..+ .| ++++.+|++|+.||.|++||+..++..
T Consensus 276 wd~~--~~~~~~~~~~~~~~~~~~~~~v~~~--~~-s~~g~~l~~g~~dg~i~vwd~~~~~~~ 333 (380)
T 3iz6_a 276 FDMR--TGHQLQVYNREPDRNDNELPIVTSV--AF-SISGRLLFAGYSNGDCYVWDTLLAEMV 333 (380)
T ss_dssp EETT--TTEEEEEECCCCSSSCCSSCSCSEE--EE-CSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred EECC--CCcEEEEecccccccccccCceEEE--EE-CCCCCEEEEEECCCCEEEEECCCCceE
Confidence 9994 433222111000 111123333 45 899999999999999999998776543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=235.43 Aligned_cols=216 Identities=15% Similarity=0.203 Sum_probs=181.6
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.+++....+. +|...|++++|+|+++ +|++|+.|++|++||+.+++....+. +...+.+++
T Consensus 149 iwd~~~~~~~~~~~----~h~~~v~~~~~~p~~~---------~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~ 213 (393)
T 1erj_A 149 IWDIENRKIVMILQ----GHEQDIYSLDYFPSGD---------KLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVA 213 (393)
T ss_dssp EEETTTTEEEEEEC----CCSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEE
T ss_pred EEECCCCcEEEEEc----cCCCCEEEEEEcCCCC---------EEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEEEE
Confidence 69999999888887 8999999999999999 89999999999999999998877776 567899999
Q ss_pred Eec-CCCEEEEEeCCCcEEEEeCCCCeEEEEe-------ecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCC-----
Q 036605 81 FAK-KGRSLHVVGTNGMASEMKSEMGEVIREF-------KASEKPISSSAFLCEEKIFALASSE--VRILSLENG----- 145 (340)
Q Consensus 81 ~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~-------~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~----- 145 (340)
|+| ++++|++++.|+.|++||+.++..+..+ .+|...|.+++|+|++.+|++++.+ |++||+.+.
T Consensus 214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293 (393)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 999 8999999999999999999999887766 5688899999999999999986544 999999763
Q ss_pred -------ceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCC---CC
Q 036605 146 -------EEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSP---NG 215 (340)
Q Consensus 146 -------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 215 (340)
.....+.+|...|.+++|+|++.+|++++. |+.|++||+ .+++....+. +|...+..+.... .+
T Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-D~~v~iwd~--~~~~~~~~l~---~h~~~v~~v~~~~~~~~~ 367 (393)
T 1erj_A 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DRGVLFWDK--KSGNPLLMLQ---GHRNSVISVAVANGSSLG 367 (393)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TSEEEEEET--TTCCEEEEEE---CCSSCEEEEEECSSCTTC
T ss_pred ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-CCeEEEEEC--CCCeEEEEEC---CCCCCEEEEEecCCcCcC
Confidence 334567889999999999999999999888 999999998 4444433333 6766666652221 15
Q ss_pred CCCCEEEEEeCCCcEEEEECCC
Q 036605 216 EDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 216 ~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
|++.+|++|+.||.|++|++..
T Consensus 368 p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 368 PEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TTCEEEEEEETTSEEEEEEEEE
T ss_pred CCCCEEEEECCCCcEEECcccc
Confidence 6889999999999999999764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=231.30 Aligned_cols=197 Identities=17% Similarity=0.197 Sum_probs=173.3
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEec--CCCEEEEEeCCCc
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAK--KGRSLHVVGTNGM 96 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~dg~ 96 (340)
.|...|.+++|+|++. .|++|+.||+|++||+++++.+..+.+ |...|.+++|+| +++.|++|+.||.
T Consensus 152 ~h~~~v~~~~~~~~~~---------~l~t~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~g~~l~sgs~Dg~ 221 (354)
T 2pbi_B 152 MHTNYLSACSFTNSDM---------QILTASGDGTCALWDVESGQLLQSFHG-HGADVLCLDLAPSETGNTFVSGGCDKK 221 (354)
T ss_dssp ECSSCEEEEEECSSSS---------EEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred ccCCcEEEEEEeCCCC---------EEEEEeCCCcEEEEeCCCCeEEEEEcC-CCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence 6889999999999998 899999999999999999999999998 999999999987 4689999999999
Q ss_pred EEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecC--CCCeEEEEECCCCCEEEE
Q 036605 97 ASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDD--VGPLQYVSASDGAKIIIT 172 (340)
Q Consensus 97 i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s 172 (340)
|++||+++++.+..+..|...|.+++|+|++.++++++.+ |++||++.++.+..+..+ ...+.+++|+|++.+|++
T Consensus 222 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence 9999999999999999999999999999999999986654 999999998777666533 357899999999999999
Q ss_pred EEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 173 AGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 173 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
++. |+.|++||+ ..+.....+. +|...+..+ .| +|++.+|++|+.||.|++|+
T Consensus 302 g~~-d~~i~vwd~--~~~~~~~~l~---~h~~~v~~l--~~-spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 302 GYN-DYTINVWDV--LKGSRVSILF---GHENRVSTL--RV-SPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EET-TSCEEEEET--TTCSEEEEEC---CCSSCEEEE--EE-CTTSSCEEEEETTSEEEEEC
T ss_pred EEC-CCcEEEEEC--CCCceEEEEE---CCCCcEEEE--EE-CCCCCEEEEEcCCCCEEecC
Confidence 887 999999998 3444333332 677777766 66 89999999999999999995
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=226.29 Aligned_cols=219 Identities=13% Similarity=0.140 Sum_probs=173.3
Q ss_pred CccCCCC--ceeeeeeCCCCCCCCCeEEEEeecc--ccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCC
Q 036605 1 IWSTNDG--SLLAEWKQPDGEPVVSYSCLACGFV--GKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPG 74 (340)
Q Consensus 1 vwd~~~g--~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~ 74 (340)
|||+..+ +++..+. +|...|++++|+|+ ++ +|++|+.||+|++||+.+++ ....+.. |..
T Consensus 35 iw~~~~~~~~~~~~l~----gH~~~V~~v~~s~~~~g~---------~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-h~~ 100 (297)
T 2pm7_B 35 IFEVEGETHKLIDTLT----GHEGPVWRVDWAHPKFGT---------ILASCSYDGKVMIWKEENGRWSQIAVHAV-HSA 100 (297)
T ss_dssp EEEBCSSCBCCCEEEC----CCSSCEEEEEECCGGGCS---------EEEEEETTTEEEEEEBSSSCBCCCEEECC-CSS
T ss_pred EEecCCCCcEEEEEEc----cccCCeEEEEecCCCcCC---------EEEEEcCCCEEEEEEcCCCceEEEEEeec-CCC
Confidence 5887643 5666776 89999999999864 67 89999999999999999874 4556666 999
Q ss_pred CeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCe--EEEEeecCCCCeeEEEEccC-------------CCEEEEecCc-
Q 036605 75 GLAGLAFAKK--GRSLHVVGTNGMASEMKSEMGE--VIREFKASEKPISSSAFLCE-------------EKIFALASSE- 136 (340)
Q Consensus 75 ~v~~v~~~~~--~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~l~~~~~-------------~~~l~~~~~~- 136 (340)
.|.+++|+|+ +..|++++.|+.|++||++++. ....+..|...|.+++|+|+ +++|++++.+
T Consensus 101 ~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~ 180 (297)
T 2pm7_B 101 SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTS
T ss_pred ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC
Confidence 9999999997 8899999999999999998763 23557789999999999997 4688886544
Q ss_pred -EEEEECCCCc----eeEEeecCCCCeEEEEECCCC---CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeee
Q 036605 137 -VRILSLENGE----EVLKFSDDVGPLQYVSASDGA---KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAID 208 (340)
Q Consensus 137 -i~i~d~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 208 (340)
|++||+++++ ....+.+|...|.+++|+|++ .+|++++. |++|+|||++...............+...+..
T Consensus 181 ~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~-D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~ 259 (297)
T 2pm7_B 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET-TSCEEEEEESSTTSCCEEEESSSSCCSSCEEE
T ss_pred cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC-CCcEEEEEeCCCCCccceeeeecccCCCcEEE
Confidence 9999998765 456788999999999999985 78888777 99999999842211110000000134455555
Q ss_pred eecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 209 CKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 209 ~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
+ .| +|++.+|++++.||.|++|+...
T Consensus 260 ~--~~-s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 260 A--SW-SLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp E--EE-CSSSCCEEEEETTSCEEEEEECT
T ss_pred E--EE-CCCCCEEEEEcCCCcEEEEEECC
Confidence 5 66 89999999999999999999763
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-31 Score=227.75 Aligned_cols=221 Identities=15% Similarity=0.137 Sum_probs=169.8
Q ss_pred CccCCCCc--eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC-------CeeEEEecCC
Q 036605 1 IWSTNDGS--LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT-------GEMKWKSTGR 71 (340)
Q Consensus 1 vwd~~~g~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~-------~~~~~~~~~~ 71 (340)
|||+.++. +...+.. ..|...|.+++|+|+++ +|++|+.|++|++||+.. .+....+.+
T Consensus 38 lw~~~~~~~~~~~~~~~--~~h~~~v~~v~~sp~~~---------~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~- 105 (330)
T 2hes_X 38 LVSVKYDDFTLIDVLDE--TAHKKAIRSVAWRPHTS---------LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG- 105 (330)
T ss_dssp EEECSSSCCEEEEEECT--TCCCSCEEEEEECTTSS---------EEEEEETTSCEEEEEC-------CCCEEEEEEC--
T ss_pred EEEecCCCeEEEEEEec--CCccCCEEEEEECCCCC---------EEEEEeCCCcEEEEEcccCcCccccceeEEEEcC-
Confidence 58887653 3444421 24899999999999999 999999999999999853 345667777
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC----CeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCC
Q 036605 72 HPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEM----GEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENG 145 (340)
Q Consensus 72 h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~----~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~ 145 (340)
|.+.|.+++|+|++++|++|+.|+.|++||+.. .+.+..+..|...|.+++|+|++.+|++++.+ |++||+.++
T Consensus 106 h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp ---CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999999999999999999999999943 24567788999999999999999999987654 999998776
Q ss_pred --ceeEEeecCCCCeEEEEECCC--CCEEEEEEcCCCeEEEEEccCCCCCcc----CCceeeecCCCeeeeeecCCCCCC
Q 036605 146 --EEVLKFSDDVGPLQYVSASDG--AKIIITAGYGEKHLQVWRCDISSKTVN----KGPALSMRHSPVAIDCKNSPNGED 217 (340)
Q Consensus 146 --~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 217 (340)
+.+..+.+|...|.+++|+|+ +.+|++++. |++|++||++....... ....+...|...+..+ .| +++
T Consensus 186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v--~~-s~~ 261 (330)
T 2hes_X 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNV--AW-GFN 261 (330)
T ss_dssp EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEE--EE-CTT
T ss_pred CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-CCeEEEEEecCCCccccceeEEeeecccccccceEEE--EE-cCC
Confidence 567888999999999999998 668888887 99999999842211000 0011111255566666 55 444
Q ss_pred CCEEEEEeCCCcEEEEECCCC
Q 036605 218 GTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 218 ~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.+|++++.||.|++|+..++
T Consensus 262 -~~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 262 -GLIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp -SCEEEEETTSCEEEEEEETT
T ss_pred -CEEEEEeCCCEEEEEEcCCC
Confidence 47999999999999998654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-30 Score=221.16 Aligned_cols=216 Identities=15% Similarity=0.071 Sum_probs=171.2
Q ss_pred CccCCCC-------ceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCC
Q 036605 1 IWSTNDG-------SLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHP 73 (340)
Q Consensus 1 vwd~~~g-------~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~ 73 (340)
|||+.++ .....+. +|...|++++|+|++. +|++|+.|++|++||+.+++....+.+ |.
T Consensus 53 iWd~~~~~~~~~~~~~~~~l~----~h~~~V~~~~~~~~~~---------~l~s~s~D~~v~lwd~~~~~~~~~~~~-h~ 118 (343)
T 2xzm_R 53 IWKLYEEEQNGYFGIPHKALT----GHNHFVSDLALSQENC---------FAISSSWDKTLRLWDLRTGTTYKRFVG-HQ 118 (343)
T ss_dssp EEEECSSCCSSBSEEEEEEEC----CCSSCEEEEEECSSTT---------EEEEEETTSEEEEEETTSSCEEEEEEC-CC
T ss_pred EEECCcCCcccccccccchhc----cCCCceEEEEECCCCC---------EEEEEcCCCcEEEEECCCCcEEEEEcC-CC
Confidence 5777543 3344555 8999999999999999 999999999999999999999989988 99
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEee---cCCCCeeEEEEccCC----------CEEEEecC--cEE
Q 036605 74 GGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK---ASEKPISSSAFLCEE----------KIFALASS--EVR 138 (340)
Q Consensus 74 ~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~i~~l~~~~~~----------~~l~~~~~--~i~ 138 (340)
+.|.+++|+|++++|++++.|+.|++||+.... ..... .|...+.+++|+|++ .++++++. .|+
T Consensus 119 ~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 197 (343)
T 2xzm_R 119 SEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK 197 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence 999999999999999999999999999998443 33332 677889999999987 67877654 499
Q ss_pred EEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCC
Q 036605 139 ILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDG 218 (340)
Q Consensus 139 i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (340)
+||. .......+.+|...|.+++|+|++++|++++. |+.|++||++ .... ....+ .+...+..+ .| +|++
T Consensus 198 iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~-dg~v~iwd~~--~~~~-~~~~~--~~~~~v~~v--~~-sp~~ 267 (343)
T 2xzm_R 198 VWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK-DKKLLIWDIL--NLTY-PQREF--DAGSTINQI--AF-NPKL 267 (343)
T ss_dssp EEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET-TCEEEEEESS--CCSS-CSEEE--ECSSCEEEE--EE-CSSS
T ss_pred EEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC-CCeEEEEECC--CCcc-cceee--cCCCcEEEE--EE-CCCC
Confidence 9994 45567788999999999999999999999888 9999999983 2111 11111 222334444 55 7888
Q ss_pred CEEEEEeCCCcEEEEECCCCCccC
Q 036605 219 TVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 219 ~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.+++++ .|+.|++|++.+.....
T Consensus 268 ~~la~~-~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 268 QWVAVG-TDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp CEEEEE-ESSCEEEEESSSCCSCS
T ss_pred CEEEEE-CCCCEEEEEeCCCCCCc
Confidence 877655 57779999998765443
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=234.66 Aligned_cols=204 Identities=9% Similarity=0.041 Sum_probs=159.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE----EecCCCCCCeEEEEEecCCCEEEEEeCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW----KSTGRHPGGLAGLAFAKKGRSLHVVGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~----~~~~~h~~~v~~v~~~~~~~~l~s~~~d 94 (340)
+|...|++++|+|+++ +++++.||+|++||+.+++... ...+ |.+.|++++|+|++++|++++.|
T Consensus 92 ~~~~~V~~~~~s~d~~----------~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~l~sgs~d 160 (357)
T 4g56_B 92 QTEAGVTDVAWVSEKG----------ILVASDSGAVELWEILEKESLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSGGKD 160 (357)
T ss_dssp ECSSCEEEEEEETTTE----------EEEEETTSCEEEC--------CCCCEEECC-CSSCEEEEEECSSSSEEEEEETT
T ss_pred CCCCCEEEEEEcCCCC----------EEEEECCCEEEEeeccccceeEEEeeccCC-CCCCEEEEEECCCCCEEEEEeCC
Confidence 5788899999999988 5567789999999998876432 2334 99999999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC-EEEEec--CcEEEEECCCCceeEEe--ecCCCCeEEEEECCCCC-
Q 036605 95 GMASEMKSEMGEVIREFKASEKPISSSAFLCEEK-IFALAS--SEVRILSLENGEEVLKF--SDDVGPLQYVSASDGAK- 168 (340)
Q Consensus 95 g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~--~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~- 168 (340)
+.|++||+.+++.+..+..|...|.+++|+|++. ++++++ +.|++||+++++.+..+ ..|...+.+++|+|++.
T Consensus 161 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 161 FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT
T ss_pred CeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc
Confidence 9999999999999999999999999999999875 555644 45999999998877554 45667899999999854
Q ss_pred EEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCC-CEEEEEeCCCcEEEEECCCCCccC
Q 036605 169 IIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDG-TVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 169 ~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+|++++. |+.|++||++ .++....+. .|...+..+ .| +|++ .+|++|+.||.|+|||+.+++.+.
T Consensus 241 ~la~g~~-d~~i~~wd~~--~~~~~~~~~---~~~~~v~~l--~~-sp~~~~~lasgs~D~~i~iwd~~~~~~~~ 306 (357)
T 4g56_B 241 TFACGDE-TGNVSLVNIK--NPDSAQTSA---VHSQNITGL--AY-SYHSSPFLASISEDCTVAVLDADFSEVFR 306 (357)
T ss_dssp EEEEEES-SSCEEEEESS--CGGGCEEEC---CCSSCEEEE--EE-CSSSSCCEEEEETTSCEEEECTTSCEEEE
T ss_pred eEEEeec-ccceeEEECC--CCcEeEEEe---ccceeEEEE--EE-cCCCCCEEEEEeCCCEEEEEECCCCcEeE
Confidence 5666555 9999999983 444333333 565666665 56 6665 678999999999999998876554
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=232.26 Aligned_cols=230 Identities=13% Similarity=0.146 Sum_probs=179.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccc---------------------------------ccc--------c
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKK---------------------------------RRK--------E 39 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~---------------------------------~~~--------~ 39 (340)
|||+.+++....+. .|...|.+++|+|+++. ++. .
T Consensus 92 iWd~~~~~~~~~~~----~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~ 167 (380)
T 3iz6_a 92 VWNALTSQKTHAIK----LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP 167 (380)
T ss_dssp EEETTTTEEEEEEE----CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS
T ss_pred EEECCCCccceEEe----cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEec
Confidence 68888888887777 67777777777776530 000 0
Q ss_pred cCceEEEEEcCCCcEEEEEccCCeeEEEec----CCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCC-CCeEEEEeec
Q 036605 40 RGTLLLALGTSNGDILAVDVLTGEMKWKST----GRHPGGLAGLAFAK-KGRSLHVVGTNGMASEMKSE-MGEVIREFKA 113 (340)
Q Consensus 40 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~----~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~ 113 (340)
.+...|++|+.|++|++||+.+++.+..+. .+|...|.+++|++ +++.|++|+.|+.|++||++ .+..+..+.+
T Consensus 168 ~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~ 247 (380)
T 3iz6_a 168 DQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG 247 (380)
T ss_dssp SSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC
T ss_pred CCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC
Confidence 012368899999999999999988776662 23899999999987 78899999999999999998 4567788899
Q ss_pred CCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCC-------CCeEEEEECCCCCEEEEEEcCCCeEEEEE
Q 036605 114 SEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDV-------GPLQYVSASDGAKIIITAGYGEKHLQVWR 184 (340)
Q Consensus 114 ~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~s~~~~d~~i~iwd 184 (340)
|...|.+++|+|++.+|++++.+ |++||+++++.+..+..+. ..|.+++|+|+|.+|++++. |+.|++||
T Consensus 248 h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~vwd 326 (380)
T 3iz6_a 248 HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYVWD 326 (380)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-TSCEEEEE
T ss_pred cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-CCCEEEEE
Confidence 99999999999999999997655 9999999998887775443 24899999999999999777 99999999
Q ss_pred ccCCCCCccCCc-eeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 185 CDISSKTVNKGP-ALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 185 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
+. .++....+ .+...|...+..+ .| +|++.+|++|+.||.|++|++...+.
T Consensus 327 ~~--~~~~~~~~~~~~~~h~~~v~~l--~~-s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 327 TL--LAEMVLNLGTLQNSHEGRISCL--GL-SSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp TT--TCCEEEEECCSCSSCCCCCCEE--EE-CSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred CC--CCceEEEEecccCCCCCceEEE--EE-CCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 83 33322211 1112455555555 55 89999999999999999999986543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-30 Score=218.56 Aligned_cols=204 Identities=16% Similarity=0.200 Sum_probs=167.5
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC--eeEEEecCCCCCCeEEEEEecC--CCEEEEEeCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG--EMKWKSTGRHPGGLAGLAFAKK--GRSLHVVGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d 94 (340)
+|...|++++|+|+++ +||+|+.|++|++||+..+ +.+..+.+ |.+.|++++|+++ +++|++|+.|
T Consensus 7 ~h~~~V~~~~~s~~g~---------~las~s~D~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~~l~s~s~D 76 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGK---------RMATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYD 76 (297)
T ss_dssp SCSSCEEEEEECTTSS---------EEEEEETTSCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CCcCceEEEEECCCCC---------EEEEEeCCCEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCCEEEEEcCC
Confidence 7999999999999999 9999999999999999753 56778888 9999999999863 8899999999
Q ss_pred CcEEEEeCCCCe--EEEEeecCCCCeeEEEEccC--CCEEEEecCc--EEEEECCCCce--eEEeecCCCCeEEEEECCC
Q 036605 95 GMASEMKSEMGE--VIREFKASEKPISSSAFLCE--EKIFALASSE--VRILSLENGEE--VLKFSDDVGPLQYVSASDG 166 (340)
Q Consensus 95 g~i~~wd~~~~~--~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~~--i~i~d~~~~~~--~~~~~~~~~~v~~~~~s~~ 166 (340)
+.|++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.+ |++||++++.. ...+.+|...|.+++|+|+
T Consensus 77 ~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 999999998874 45567788999999999998 8888886544 99999987632 3567889999999999997
Q ss_pred -------------CCEEEEEEcCCCeEEEEEccCCCCCccC-CceeeecCCCeeeeeecCCCCCC---CCEEEEEeCCCc
Q 036605 167 -------------AKIIITAGYGEKHLQVWRCDISSKTVNK-GPALSMRHSPVAIDCKNSPNGED---GTVILAVAESGV 229 (340)
Q Consensus 167 -------------~~~l~s~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~s~dg~ 229 (340)
+++|++++. |+.|++||++ .+.... ......+|...+..+ .| +|+ +.+|++++.||.
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~-D~~v~lwd~~--~~~~~~~~~~~l~~H~~~V~~v--~~-sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYN--SDAQTYVLESTLEGHSDWVRDV--AW-SPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp C------------CCEEEEEET-TSCEEEEEEE--TTTTEEEEEEEECCCSSCEEEE--EE-CCCCSSSEEEEEEETTSC
T ss_pred cccccccCCCCCCcceEEEEcC-CCcEEEEEEc--CCCceEEEEEEecCCCCceEEE--EE-CCCCCCceEEEEEECCCc
Confidence 468888887 9999999995 222111 111112577777777 66 676 489999999999
Q ss_pred EEEEECCCC
Q 036605 230 AYSWDLKTV 238 (340)
Q Consensus 230 i~vwd~~~~ 238 (340)
|++||+...
T Consensus 231 v~iWd~~~~ 239 (297)
T 2pm7_B 231 CIIWTQDNE 239 (297)
T ss_dssp EEEEEESST
T ss_pred EEEEEeCCC
Confidence 999998764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-30 Score=223.11 Aligned_cols=203 Identities=13% Similarity=0.128 Sum_probs=169.7
Q ss_pred eeeeeCCCCCCCCCeEEEEe-----ec-cccccccccCceEEEEEcCCCcEEEEEccCC-------eeEEEecCCCCCCe
Q 036605 10 LAEWKQPDGEPVVSYSCLAC-----GF-VGKKRRKERGTLLLALGTSNGDILAVDVLTG-------EMKWKSTGRHPGGL 76 (340)
Q Consensus 10 ~~~~~~~~~~~~~~v~~l~~-----sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-------~~~~~~~~~h~~~v 76 (340)
...+. +|...|++++| ++ +++ +|++|+.|++|++||+.++ .....+.+ |...|
T Consensus 14 ~~~l~----gH~~~V~~~~~~~s~~~~~d~~---------~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-h~~~V 79 (343)
T 2xzm_R 14 RGILE----GHSDWVTSIVAGFSQKENEDSP---------VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-HNHFV 79 (343)
T ss_dssp EEEEE----CCSSCEEEEEECCCSSTTCCCC---------EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-CSSCE
T ss_pred eeeec----cchhhhhheeeEEEeecCCCCC---------EEEEEcCCCEEEEEECCcCCcccccccccchhcc-CCCce
Confidence 34565 89999999999 66 778 9999999999999998753 34566777 99999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEe---
Q 036605 77 AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKF--- 151 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~--- 151 (340)
.+++|+|++.+|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.+ |++||+... ....+
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~ 158 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEK 158 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTT
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecc
Confidence 999999999999999999999999999999999999999999999999999999886554 999999844 33333
Q ss_pred ecCCCCeEEEEECCCC----------CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEE
Q 036605 152 SDDVGPLQYVSASDGA----------KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVI 221 (340)
Q Consensus 152 ~~~~~~v~~~~~s~~~----------~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (340)
..|...|.+++|+|++ .+|++++. |+.|++||. .......+. .|...+..+ .| +|++.+|
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~---~~~~~~~~~---~h~~~v~~~--~~-s~~g~~l 228 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW-DGRLKVWNT---NFQIRYTFK---AHESNVNHL--SI-SPNGKYI 228 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET-TSEEEEEET---TTEEEEEEE---CCSSCEEEE--EE-CTTSSEE
T ss_pred cCCCceeeeeeeccccccccccCCCCCEEEEEcC-CCEEEEEcC---CCceeEEEc---CccccceEE--EE-CCCCCEE
Confidence 3688899999999987 68898887 999999995 222222222 566666665 66 8999999
Q ss_pred EEEeCCCcEEEEECCC
Q 036605 222 LAVAESGVAYSWDLKT 237 (340)
Q Consensus 222 ~~~s~dg~i~vwd~~~ 237 (340)
++|+.||.|++||+..
T Consensus 229 ~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 229 ATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEEETTCEEEEEESSC
T ss_pred EEEcCCCeEEEEECCC
Confidence 9999999999999954
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-30 Score=239.95 Aligned_cols=216 Identities=14% Similarity=0.185 Sum_probs=177.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC------CCCC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG------RHPG 74 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~------~h~~ 74 (340)
|||..++++...+. +|...|++++|+|+++ +|++|+.|++|++||+.+++....+.. +|.+
T Consensus 174 lwd~~~~~~~~~l~----~H~~~V~~v~fspdg~---------~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 174 IFEGPPFKFKSTFG----EHTKFVHSVRYNPDGS---------LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 240 (611)
T ss_dssp EEETTTBEEEEEEC----CCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred EEECCCCeEeeeec----cccCceEEEEECCCCC---------EEEEEECCCcEEEEECCCCcEeeeeccccccccccCC
Confidence 58888888888887 8999999999999999 999999999999999999988877742 3999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEE-------------------------------------------e
Q 036605 75 GLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIRE-------------------------------------------F 111 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-------------------------------------------~ 111 (340)
.|.+++|+|++++|++++.|+.|++||+.+++.+.. +
T Consensus 241 ~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~ 320 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR 320 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEE
Confidence 999999999999999999999999999998765443 3
Q ss_pred ecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEe-e------------------------------------
Q 036605 112 KASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKF-S------------------------------------ 152 (340)
Q Consensus 112 ~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~-~------------------------------------ 152 (340)
.+|...|.+++|+|++++|++++.+ |++||+.+++....+ .
T Consensus 321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~ 400 (611)
T 1nr0_A 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 400 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSS
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccc
Confidence 4678899999999999999986554 999998876433221 0
Q ss_pred ---------------------------------------------cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccC
Q 036605 153 ---------------------------------------------DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDI 187 (340)
Q Consensus 153 ---------------------------------------------~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~ 187 (340)
.|...+.+++|+|+|++|++++. |+.|++||+.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~-D~~v~lwd~~- 478 (611)
T 1nr0_A 401 DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ-DSKVHVYKLS- 478 (611)
T ss_dssp CTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET-TSEEEEEEEE-
T ss_pred cccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC-CCeEEEEEcc-
Confidence 12345678999999999999888 9999999984
Q ss_pred CCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 188 SSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.+.. .... ...|...+..+ .| +|++.+|++++.|+.|++|++.+
T Consensus 479 -~~~~-~~~~-~~~h~~~v~~v--~f-spdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 479 -GASV-SEVK-TIVHPAEITSV--AF-SNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp -TTEE-EEEE-EEECSSCEEEE--EE-CTTSSEEEEEETTSCEEEEEGGG
T ss_pred -CCce-eeee-ccCCCCceEEE--EE-CCCCCEEEEEcCCCCEEEEEcCC
Confidence 3221 1111 13677677766 67 89999999999999999999987
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-30 Score=222.37 Aligned_cols=211 Identities=12% Similarity=0.104 Sum_probs=166.9
Q ss_pred CCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC--eeEEEec-CCCCCCeEEEEEe
Q 036605 6 DGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG--EMKWKST-GRHPGGLAGLAFA 82 (340)
Q Consensus 6 ~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~-~~h~~~v~~v~~~ 82 (340)
+.+++..+. +|...|.+++|+|+ +|++|+.||+|++||+..+ .....+. ..|.+.|.+++|+
T Consensus 3 ~~~~~~~~~----~h~~~v~~~~~s~~-----------~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~s 67 (330)
T 2hes_X 3 SINLIKSLK----LYKEKIWSFDFSQG-----------ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR 67 (330)
T ss_dssp CCEEEEEEE----CCSSCEEEEEEETT-----------EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEEC
T ss_pred ccccceeec----cCCCceeeeccCCC-----------EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEEC
Confidence 455677777 89999999999975 5999999999999999875 3455553 3399999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCC-------CeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCC----ceeE
Q 036605 83 KKGRSLHVVGTNGMASEMKSEM-------GEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENG----EEVL 149 (340)
Q Consensus 83 ~~~~~l~s~~~dg~i~~wd~~~-------~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~----~~~~ 149 (340)
|++++|++++.|+.|++||+.. .+.+..+.+|...|.+++|+|++++|++++.+ |++||+... +.+.
T Consensus 68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 9999999999999999999853 35567788999999999999999999987654 999999432 4567
Q ss_pred EeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCC--CCEEEEEeCC
Q 036605 150 KFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGED--GTVILAVAES 227 (340)
Q Consensus 150 ~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~s~d 227 (340)
.+.+|...|.+++|+|++.+|++++. |+.|++||++....+....+. +|...+..+ .| +++ +.+|++++.|
T Consensus 148 ~~~~h~~~v~~v~~~p~~~~l~s~s~-D~~i~iW~~~~~~~~~~~~~~---~h~~~v~~~--~~-~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHPSEALLASSSY-DDTVRIWKDYDDDWECVAVLN---GHEGTVWSS--DF-DKTEGVFRLCSGSDD 220 (330)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEET-TSCEEEEEEETTEEEEEEEEC---CCSSCEEEE--EE-CCSSSSCEEEEEETT
T ss_pred EeccCCCceEEEEECCCCCEEEEEcC-CCeEEEEECCCCCeeEEEEcc---CCCCcEEEE--Ee-cCCCCeeEEEEEeCC
Confidence 78899999999999999999999888 999999998421112222222 566666666 55 566 6789999999
Q ss_pred CcEEEEECCCC
Q 036605 228 GVAYSWDLKTV 238 (340)
Q Consensus 228 g~i~vwd~~~~ 238 (340)
+.|++||+...
T Consensus 221 ~~v~iw~~~~~ 231 (330)
T 2hes_X 221 STVRVWKYMGD 231 (330)
T ss_dssp SCEEEEEEEEE
T ss_pred CeEEEEEecCC
Confidence 99999998764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=231.21 Aligned_cols=217 Identities=12% Similarity=0.076 Sum_probs=178.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.+++....+. .|...|++++|+|+++ +|++|+.||.|++||+.+++....+.+ |.+.|.+++
T Consensus 123 iwd~~~~~~~~~~~----~h~~~v~~~~~~~~~~---------~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~ 188 (420)
T 3vl1_A 123 VLDSNFNLQREIDQ----AHVSEITKLKFFPSGE---------ALISSSQDMQLKIWSVKDGSNPRTLIG-HRATVTDIA 188 (420)
T ss_dssp EECTTSCEEEEETT----SSSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTCCCCEEEEC-CSSCEEEEE
T ss_pred EEeCCCcceeeecc----cccCccEEEEECCCCC---------EEEEEeCCCeEEEEeCCCCcCceEEcC-CCCcEEEEE
Confidence 69999888887766 7999999999999999 999999999999999999998888888 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC---C---------------------CCeeEEEEccCCCEEEEecCc
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKAS---E---------------------KPISSSAFLCEEKIFALASSE 136 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---~---------------------~~i~~l~~~~~~~~l~~~~~~ 136 (340)
|+|+++.|++++.|+.|++||+.+++.+..+..+ . ..+.+++|+|+++++++++.+
T Consensus 189 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 268 (420)
T 3vl1_A 189 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS 268 (420)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred EcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence 9999999999999999999999999988887643 2 344455567899999886554
Q ss_pred --EEEEECCCCceeEEe-ecCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecC
Q 036605 137 --VRILSLENGEEVLKF-SDDVGPLQYVSASDGAK-IIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNS 212 (340)
Q Consensus 137 --i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~-~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
|++||+++++.+..+ ..|...|.+++|+|++. +|++++. |+.|++||++ .+.. ....+...+...+..+ .
T Consensus 269 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~-dg~i~vwd~~--~~~~-~~~~~~~~~~~~v~~~--~ 342 (420)
T 3vl1_A 269 GVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE-NGMLAQWDLR--SPEC-PVGEFLINEGTPINNV--Y 342 (420)
T ss_dssp SCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET-TSEEEEEETT--CTTS-CSEEEEESTTSCEEEE--E
T ss_pred CeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC-CCeEEEEEcC--CCcC-chhhhhccCCCCceEE--E
Confidence 999999999887776 45788999999999999 8888777 9999999994 3322 1122222244434333 2
Q ss_pred CCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 213 PNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 213 ~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
.+++.+|++++.||.|++|++....
T Consensus 343 --~~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 343 --FAAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp --EETTEEEEEETTTEEEEEEEECCTT
T ss_pred --eCCCCEEEEecCCccEEEEeccCCC
Confidence 3577899999999999999998743
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-31 Score=233.45 Aligned_cols=207 Identities=13% Similarity=0.125 Sum_probs=165.8
Q ss_pred CCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeE--EEecCCCCCCeEEEEEec-CCCEEEEEeCC
Q 036605 19 EPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMK--WKSTGRHPGGLAGLAFAK-KGRSLHVVGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d 94 (340)
.|...|+||+|+|.+ . +||+|+.||.|+|||+.+++.. ..+.+ |.+.|++|+|+| ++++|++|+.|
T Consensus 117 ~~~~~V~~l~~~P~~~~---------~lasGs~dg~i~lWd~~~~~~~~~~~~~g-H~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPS---------TVAVGSKGGDIMLWNFGIKDKPTFIKGIG-AGGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp ECSSCEEEEEECSSCTT---------CEEEEETTSCEEEECSSCCSCCEEECCCS-SSCCCCEEEECSSCTTEEEEECSS
T ss_pred CCCCCEEEEEEeCCCCC---------EEEEEeCCCEEEEEECCCCCceeEEEccC-CCCCEEEEEEeCCCCCEEEEEeCC
Confidence 577899999999954 7 8999999999999999877643 34455 999999999998 68899999999
Q ss_pred CcEEEEeCCCCeEEEEeec--CCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCE-
Q 036605 95 GMASEMKSEMGEVIREFKA--SEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKI- 169 (340)
Q Consensus 95 g~i~~wd~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~- 169 (340)
|.|++||++++........ +...+.+++|+|++.+|++++.+ |++||++. +.+..+.+|...|.+++|+|++..
T Consensus 187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceE
Confidence 9999999987654433332 23457899999999999997655 99999875 467788999999999999999875
Q ss_pred EEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 170 IITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 170 l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
|++++. |+.|+|||++ .......+.....|...+..+ .| +|++.+|++++.||.|+|||+.+++...
T Consensus 266 ~~s~s~-d~~v~iwd~~--~~~~~~~~~~~~~h~~~v~~~--~~-spdg~~l~s~~~D~~i~iwd~~~~~~~~ 332 (435)
T 4e54_B 266 LATASV-DQTVKIWDLR--QVRGKASFLYSLPHRHPVNAA--CF-SPDGARLLTTDQKSEIRVYSASQWDCPL 332 (435)
T ss_dssp EEEEET-TSBCCEEETT--TCCSSSCCSBCCBCSSCEEEC--CB-CTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred EEEecC-cceeeEEecc--cccccceEEEeeeccccccce--eE-CCCCCeeEEEcCCCEEEEEECCCCccce
Confidence 555555 9999999995 333333333333666667666 77 8999999999999999999998865443
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=241.16 Aligned_cols=206 Identities=17% Similarity=0.310 Sum_probs=180.5
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||. +++++..+. .|...|++++|+|+++ +|++|+.|+.|++||. +++.+..+.+ |...|++++
T Consensus 370 ~~~~-~~~~~~~~~----~~~~~v~~~~~s~dg~---------~l~~~~~d~~v~~~~~-~~~~~~~~~~-~~~~v~~~~ 433 (577)
T 2ymu_A 370 LWNR-NGQLLQTLT----GHSSSVRGVAFSPDGQ---------TIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVWGVA 433 (577)
T ss_dssp EEET-TCCEEEEEE----CCSSCEEEEEECTTSS---------CEEEEETTSEEEEECT-TCCEEEEEEC-CSSCEEEEE
T ss_pred EEcC-CCCEEEEec----CCCCCeEEEEECCCCC---------EEEEEeCCCEEEEEeC-CCCEEEEecC-CCCCeEEEE
Confidence 4774 567777777 7899999999999999 8999999999999995 5677778888 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v 158 (340)
|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+|++++|++++.+ |++||. +++.+..+.+|...|
T Consensus 434 ~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v 511 (577)
T 2ymu_A 434 FSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 511 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCE
Confidence 9999999999999999999996 567788899999999999999999999986554 999995 677889999999999
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
++++|+|++++|++++. |+.|++||. .++....+. +|...+..+ .| +||+.+|++++.||.|++||
T Consensus 512 ~~l~~s~dg~~l~s~~~-dg~v~lwd~---~~~~~~~~~---~h~~~v~~~--~f-s~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 512 RGVAFSPDGQTIASASD-DKTVKLWNR---NGQLLQTLT---GHSSSVWGV--AF-SPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEECTTSSCEEEEET-TSEEEEECT---TSCEEEEEE---CCSSCEEEE--EE-CTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEEC-cCEEEEEeC---CCCEEEEEc---CCCCCEEEE--EE-cCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999888 999999996 344433333 777777776 67 89999999999999999997
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.8e-30 Score=222.87 Aligned_cols=220 Identities=15% Similarity=0.150 Sum_probs=180.4
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-CCCCCeEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-RHPGGLAGL 79 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~h~~~v~~v 79 (340)
|+.....+...+. +|...|+|++|+|++ + +|++|+.||.|++||+.+++....+.. .|.+.|.++
T Consensus 58 ~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 124 (383)
T 3ei3_B 58 RSLKSYKLHRTAS----PFDRRVTSLEWHPTHPT---------TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGM 124 (383)
T ss_dssp HHHTTCEEEEEEC----CCSSCEEEEEECSSCTT---------EEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEE
T ss_pred ccccccceEEecc----CCCCCEEEEEECCCCCC---------EEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEE
Confidence 3445556666666 899999999999999 8 999999999999999998887766652 399999999
Q ss_pred EEec-CCCEEEEEeCCCcEEEEeCCCCeEEEEeecC---CCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeec
Q 036605 80 AFAK-KGRSLHVVGTNGMASEMKSEMGEVIREFKAS---EKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSD 153 (340)
Q Consensus 80 ~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~ 153 (340)
+|+| +++.|++++.|+.|++||+.+ ..+..+..+ ...+.+++|+|++.++++++.+ |++||+ +++.+..+..
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~ 202 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL 202 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc
Confidence 9999 778999999999999999986 445555444 3779999999999999987655 999999 5678889999
Q ss_pred CCCCeEEEEECCCCC-EEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCC-CCCEEEEEeCCCcEE
Q 036605 154 DVGPLQYVSASDGAK-IIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGE-DGTVILAVAESGVAY 231 (340)
Q Consensus 154 ~~~~v~~~~~s~~~~-~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~s~dg~i~ 231 (340)
|...|.+++|+|++. +|++++. |+.|++||++ .............|...+..+ .| +| ++.+|++++.||.|+
T Consensus 203 h~~~v~~~~~~~~~~~~l~s~~~-d~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~--~~-s~~~~~~l~~~~~d~~i~ 276 (383)
T 3ei3_B 203 HKAKVTHAEFNPRCDWLMATSSV-DATVKLWDLR--NIKDKNSYIAEMPHEKPVNAA--YF-NPTDSTKLLTTDQRNEIR 276 (383)
T ss_dssp SSSCEEEEEECSSCTTEEEEEET-TSEEEEEEGG--GCCSTTCEEEEEECSSCEEEE--EE-CTTTSCEEEEEESSSEEE
T ss_pred CCCcEEEEEECCCCCCEEEEEeC-CCEEEEEeCC--CCCcccceEEEecCCCceEEE--EE-cCCCCCEEEEEcCCCcEE
Confidence 999999999999999 7888777 9999999995 322222233333566666666 66 78 999999999999999
Q ss_pred EEECCCCCccC
Q 036605 232 SWDLKTVSQDE 242 (340)
Q Consensus 232 vwd~~~~~~~~ 242 (340)
+||+.+++...
T Consensus 277 iwd~~~~~~~~ 287 (383)
T 3ei3_B 277 VYSSYDWSKPD 287 (383)
T ss_dssp EEETTBTTSCS
T ss_pred EEECCCCcccc
Confidence 99998876554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-29 Score=220.44 Aligned_cols=213 Identities=17% Similarity=0.204 Sum_probs=174.3
Q ss_pred CceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc--CCeeEEEecCCCCCCeEEEEEecC
Q 036605 7 GSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL--TGEMKWKSTGRHPGGLAGLAFAKK 84 (340)
Q Consensus 7 g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~~h~~~v~~v~~~~~ 84 (340)
|+++..+. +|...|++++|+|+++ +|++|+.||.|++||+. +++....+.+ |.+.|++++|+++
T Consensus 1 G~~~~~~~----~h~~~v~~~~~s~~~~---------~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~ 66 (379)
T 3jrp_A 1 GSMVVIAN----AHNELIHDAVLDYYGK---------RLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHP 66 (379)
T ss_dssp ----CCEE----ECCCCEEEEEECSSSS---------EEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCG
T ss_pred CCccEEec----CCcccEEEEEEcCCCC---------EEEEEECCCcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCC
Confidence 34555666 8999999999999999 99999999999999998 5566777887 9999999999977
Q ss_pred --CCEEEEEeCCCcEEEEeCCCCe--EEEEeecCCCCeeEEEEccC--CCEEEEecCc--EEEEECCCCc--eeEEeecC
Q 036605 85 --GRSLHVVGTNGMASEMKSEMGE--VIREFKASEKPISSSAFLCE--EKIFALASSE--VRILSLENGE--EVLKFSDD 154 (340)
Q Consensus 85 --~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~~--i~i~d~~~~~--~~~~~~~~ 154 (340)
+++|++++.||.|++||+.+++ .+..+..|...|.+++|+|+ +.++++++.+ |++||+.++. ....+..|
T Consensus 67 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 146 (379)
T 3jrp_A 67 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH 146 (379)
T ss_dssp GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC
T ss_pred CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC
Confidence 8999999999999999999987 66777889999999999999 8999886554 9999998874 34566789
Q ss_pred CCCeEEEEECC-------------CCCEEEEEEcCCCeEEEEEccCCCCCccCCce-eeecCCCeeeeeecCCCCCC---
Q 036605 155 VGPLQYVSASD-------------GAKIIITAGYGEKHLQVWRCDISSKTVNKGPA-LSMRHSPVAIDCKNSPNGED--- 217 (340)
Q Consensus 155 ~~~v~~~~~s~-------------~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--- 217 (340)
...|.+++|+| ++.+|++++. |+.|++||++ .+....... ....|...+..+ .| +|+
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~~~~~~~~~~h~~~v~~~--~~-sp~~~~ 220 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYN--SDAQTYVLESTLEGHSDWVRDV--AW-SPTVLL 220 (379)
T ss_dssp TTCEEEEEECCCC----------CTTCEEEEEET-TSCEEEEEEE--TTTTEEEEEEEECCCSSCEEEE--EE-CCCCSS
T ss_pred CCceEEEEEcCccccccccccCCCCCCEEEEEeC-CCeEEEEEec--CCCcceeeEEEEecccCcEeEE--EE-CCCCCC
Confidence 99999999999 6899999888 9999999995 222111111 112455556665 66 788
Q ss_pred CCEEEEEeCCCcEEEEECCCCC
Q 036605 218 GTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 218 ~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
+.+|++++.||.|++||+..+.
T Consensus 221 ~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 221 RSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp SEEEEEEETTSCEEEEEESSTT
T ss_pred CCeEEEEeCCCEEEEEeCCCCC
Confidence 8999999999999999998753
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.6e-30 Score=221.65 Aligned_cols=210 Identities=12% Similarity=0.139 Sum_probs=170.7
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC----eeEEEecCCCCCCeEEEEEec--CCCEEEEEe
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG----EMKWKSTGRHPGGLAGLAFAK--KGRSLHVVG 92 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~----~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~ 92 (340)
+|...|+|++|+|+++ +|++|+.||.|++||+.++ +....+.+ |.+.|++++|+| ++++|++++
T Consensus 9 gH~~~v~~~~~~~~~~---------~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~ 78 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGR---------HVATCSSDQHIKVFKLDKDTSNWELSDSWRA-HDSSIVAIDWASPEYGRIIASAS 78 (351)
T ss_dssp CCSSCEEEEEECSSSS---------EEEEEETTSEEEEEEECSSSCCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEE
T ss_pred ccccceeEEEEcCCCC---------EEEEeeCCCeEEEEECCCCCCcceecceecc-CCCcEEEEEEcCCCCCCEEEEEc
Confidence 7999999999999999 9999999999999999876 45666777 999999999999 699999999
Q ss_pred CCCcEEEEeCCCC---------eEEEEeecCCCCeeEEEEccC--CCEEEEecCc--EEEEECCCCce------------
Q 036605 93 TNGMASEMKSEMG---------EVIREFKASEKPISSSAFLCE--EKIFALASSE--VRILSLENGEE------------ 147 (340)
Q Consensus 93 ~dg~i~~wd~~~~---------~~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~~--i~i~d~~~~~~------------ 147 (340)
.||.|++||+.++ +.+..+..|...|.+++|+|+ +.++++++.+ |++||+++++.
T Consensus 79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence 9999999999887 567778889999999999999 9999886544 99999875531
Q ss_pred ------------------------------------------------eEEeecCCCCeEEEEECCCC----CEEEEEEc
Q 036605 148 ------------------------------------------------VLKFSDDVGPLQYVSASDGA----KIIITAGY 175 (340)
Q Consensus 148 ------------------------------------------------~~~~~~~~~~v~~~~~s~~~----~~l~s~~~ 175 (340)
+..+.+|...|.+++|+|++ .+|++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 33456788999999999998 78888777
Q ss_pred CCCeEEEEEccCCCCCcc-----------------------------------------CCceeeecCCCeeeeeecCCC
Q 036605 176 GEKHLQVWRCDISSKTVN-----------------------------------------KGPALSMRHSPVAIDCKNSPN 214 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~ 214 (340)
|+.|++||++....... ........|...+..+ .|
T Consensus 239 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~- 314 (351)
T 3f3f_A 239 -DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV--SW- 314 (351)
T ss_dssp -TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEE--EE-
T ss_pred -CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEE--EE-
Confidence 99999999953210000 0011112355556655 66
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 215 GEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 215 ~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
++++.+|++++.||.|++|++.++++..
T Consensus 315 s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 315 NLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp CSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred cCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 8899999999999999999998876554
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=8.4e-31 Score=223.77 Aligned_cols=218 Identities=16% Similarity=0.209 Sum_probs=173.1
Q ss_pred CccCCCCc--eeeeeeCCCCCCCCCeEEEEeecc--ccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCC
Q 036605 1 IWSTNDGS--LLAEWKQPDGEPVVSYSCLACGFV--GKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPG 74 (340)
Q Consensus 1 vwd~~~g~--~~~~~~~~~~~~~~~v~~l~~sp~--~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~ 74 (340)
|||+.++. ++..+. +|...|++++|+|+ ++ +|++|+.|++|++||+.+++ ....+.+ |.+
T Consensus 39 lwd~~~~~~~~~~~l~----gH~~~V~~v~~~~~~~~~---------~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-h~~ 104 (316)
T 3bg1_A 39 IFDVRNGGQILIADLR----GHEGPVWQVAWAHPMYGN---------ILASCSYDRKVIIWREENGTWEKSHEHAG-HDS 104 (316)
T ss_dssp EEEEETTEEEEEEEEE----CCSSCEEEEEECCGGGSS---------CEEEEETTSCEEEECCSSSCCCEEEEECC-CSS
T ss_pred EEEecCCCcEEEEEEc----CCCccEEEEEeCCCCCCC---------EEEEEECCCEEEEEECCCCcceEEEEccC-CCC
Confidence 68988775 346676 89999999999864 67 89999999999999998874 5556777 999
Q ss_pred CeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCeE---EEEeecCCCCeeEEEEccC-----------------CCEEEE
Q 036605 75 GLAGLAFAKK--GRSLHVVGTNGMASEMKSEMGEV---IREFKASEKPISSSAFLCE-----------------EKIFAL 132 (340)
Q Consensus 75 ~v~~v~~~~~--~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~i~~l~~~~~-----------------~~~l~~ 132 (340)
.|++++|+|+ +.+|++++.|+.|++||+..+.. ...+..|...+.+++|+|+ +.+|++
T Consensus 105 ~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC
T ss_pred ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEE
Confidence 9999999998 78999999999999999987632 3345678889999999997 367877
Q ss_pred ecCc--EEEEECCCC---ceeEEeecCCCCeEEEEECCCC----CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCC
Q 036605 133 ASSE--VRILSLENG---EEVLKFSDDVGPLQYVSASDGA----KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHS 203 (340)
Q Consensus 133 ~~~~--i~i~d~~~~---~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (340)
++.+ |++||+..+ +.+..+.+|...|.+++|+|++ .+|++++. |++|++|+++........ ......|.
T Consensus 185 gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~-D~~v~iw~~~~~~~~~~~-~~~~~~~~ 262 (316)
T 3bg1_A 185 GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ-DGRVFIWTCDDASSNTWS-PKLLHKFN 262 (316)
T ss_dssp CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET-TCEEEEEECSSTTCCCCB-CCEEEECS
T ss_pred ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC-CCeEEEEEccCccccchh-hhhhhcCC
Confidence 6544 999999755 3567788999999999999986 78898887 999999998421111111 11112455
Q ss_pred CeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 204 PVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
..+..+ .| +|++.+|++++.||.|++|+...
T Consensus 263 ~~v~~v--~~-sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 263 DVVWHV--SW-SITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SCEEEE--EE-CTTTCCEEEEESSSCEEEEEECT
T ss_pred CcEEEE--EE-cCCCCEEEEEcCCCeEEEEEECC
Confidence 566666 66 89999999999999999999753
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=220.00 Aligned_cols=203 Identities=17% Similarity=0.202 Sum_probs=164.3
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCCCeEEEEEec--CCCEEEEEeCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPGGLAGLAFAK--KGRSLHVVGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d 94 (340)
+|...|++++|+|+++ +||+|+.|++|++||+.++. .+..+.+ |.+.|.+++|++ +++.|++|+.|
T Consensus 11 ~H~~~V~~v~~s~~g~---------~lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGT---------RLATCSSDRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp ---CCEEEEEECGGGC---------EEEEEETTTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEEETT
T ss_pred cccCeEEEeeEcCCCC---------EEEEEeCCCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEEECC
Confidence 7999999999999999 99999999999999999875 4567777 999999999986 48899999999
Q ss_pred CcEEEEeCCCCe--EEEEeecCCCCeeEEEEccC--CCEEEEecCc--EEEEECCCCce---eEEeecCCCCeEEEEECC
Q 036605 95 GMASEMKSEMGE--VIREFKASEKPISSSAFLCE--EKIFALASSE--VRILSLENGEE---VLKFSDDVGPLQYVSASD 165 (340)
Q Consensus 95 g~i~~wd~~~~~--~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~~--i~i~d~~~~~~---~~~~~~~~~~v~~~~~s~ 165 (340)
+.|++||++++. ....+.+|...|.+++|+|+ +.+|++++.+ |++||+..+.. ...+.+|...+.++.|+|
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160 (316)
T ss_dssp SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence 999999999873 56677889999999999998 7888886554 99999987632 344578889999999999
Q ss_pred C-----------------CCEEEEEEcCCCeEEEEEccCCCC-CccCCceeeecCCCeeeeeecCCCCCCC----CEEEE
Q 036605 166 G-----------------AKIIITAGYGEKHLQVWRCDISSK-TVNKGPALSMRHSPVAIDCKNSPNGEDG----TVILA 223 (340)
Q Consensus 166 ~-----------------~~~l~s~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~ 223 (340)
+ +.+|++++. |+.|++||++.... .....+. .|...+..+ .| +|++ .+|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~-D~~v~lWd~~~~~~~~~~~~l~---~h~~~V~~v--~~-sp~~~~~~~~las 233 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGC-DNLIKLWKEEEDGQWKEEQKLE---AHSDWVRDV--AW-APSIGLPTSTIAS 233 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBT-TSBCCEEEECTTSCEEEEECCB---CCSSCEEEE--EC-CCCSSCSCCEEEE
T ss_pred ccCCccccccccccCccccceEEEecC-CCeEEEEEeCCCCccceeeecc---cCCCceEEE--Ee-cCCCCCCCceEEE
Confidence 7 367888777 99999999841110 1222233 677777777 66 6765 88999
Q ss_pred EeCCCcEEEEECCCC
Q 036605 224 VAESGVAYSWDLKTV 238 (340)
Q Consensus 224 ~s~dg~i~vwd~~~~ 238 (340)
++.||.|++|++...
T Consensus 234 ~s~D~~v~iw~~~~~ 248 (316)
T 3bg1_A 234 CSQDGRVFIWTCDDA 248 (316)
T ss_dssp EETTCEEEEEECSST
T ss_pred EcCCCeEEEEEccCc
Confidence 999999999998763
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=226.32 Aligned_cols=214 Identities=14% Similarity=0.170 Sum_probs=178.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeec-cccccccccCceEEEEEcCCCcEEEEEccCCeeEEEe---cCCCCCCe
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGF-VGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKS---TGRHPGGL 76 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---~~~h~~~v 76 (340)
|||+.+++.+..+. .|...|++++|+| ++. +|++|+.||.|++||+.+++....+ .. |...|
T Consensus 99 v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v 164 (366)
T 3k26_A 99 IINPITMQCIKHYV----GHGNAINELKFHPRDPN---------LLLSVSKDHALRLWNIQTDTLVAIFGGVEG-HRDEV 164 (366)
T ss_dssp EECTTTCCEEEEEE----SCCSCEEEEEECSSCTT---------EEEEEETTSCEEEEETTTTEEEEEECSTTS-CSSCE
T ss_pred EEEchhceEeeeec----CCCCcEEEEEECCCCCC---------EEEEEeCCCeEEEEEeecCeEEEEeccccc-ccCce
Confidence 69999999998888 7899999999999 788 9999999999999999999988887 45 99999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEee----------------------------cCCCCeeEEEEccCCC
Q 036605 77 AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK----------------------------ASEKPISSSAFLCEEK 128 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~----------------------------~~~~~i~~l~~~~~~~ 128 (340)
.+++|+|+++.|++++.||.|++||+.+++....+. .|...|.+++|+ +.
T Consensus 165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 242 (366)
T 3k26_A 165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD 242 (366)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT
T ss_pred eEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC
Confidence 999999999999999999999999999876443333 388899999999 66
Q ss_pred EEEEecCc--EEEEECCCCce--------------eEEeecCCCCeEEEEECCC--CCEEEEEEcCCCeEEEEEccCCCC
Q 036605 129 IFALASSE--VRILSLENGEE--------------VLKFSDDVGPLQYVSASDG--AKIIITAGYGEKHLQVWRCDISSK 190 (340)
Q Consensus 129 ~l~~~~~~--i~i~d~~~~~~--------------~~~~~~~~~~v~~~~~s~~--~~~l~s~~~~d~~i~iwd~~~~~~ 190 (340)
++++++.+ |++||+.++.. +..+..|...|.+++|+|+ +.+|++++. |+.|++||++ .+
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~-dg~i~vwd~~--~~ 319 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ-VGKLYVWDLE--VE 319 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT-TSCEEEEECC--SS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec-CCcEEEEECC--CC
Confidence 88776544 99999987644 6778889999999999999 999999777 9999999994 44
Q ss_pred CccCCceeee-cC--CCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 191 TVNKGPALSM-RH--SPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 191 ~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
+........+ .| ...+..+ .| ++++.+|++++.||.|++||+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~--~~-s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 320 DPHKAKCTTLTHHKCGAAIRQT--SF-SRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SGGGCEEEEECCTTCCSCEEEE--EE-CTTSSEEEEEETTSEEEEEEC-
T ss_pred CCccccceEEcccccCCceEEE--Ee-CCCCCeEEEEeCCCEEEEEEec
Confidence 3332222222 23 4555555 66 8999999999999999999985
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=225.59 Aligned_cols=205 Identities=12% Similarity=0.141 Sum_probs=171.2
Q ss_pred CCCCCeEEEEeec-cccccccccCceEEEEEcCCCcEEEEEccCC-------eeEEEecCCCCCCeEEEEEecCC-CEEE
Q 036605 19 EPVVSYSCLACGF-VGKKRRKERGTLLLALGTSNGDILAVDVLTG-------EMKWKSTGRHPGGLAGLAFAKKG-RSLH 89 (340)
Q Consensus 19 ~~~~~v~~l~~sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-------~~~~~~~~~h~~~v~~v~~~~~~-~~l~ 89 (340)
+|...|++++|+| ++. +|++|+.||.|++||+.++ +....+.+ |...|.+++|+|++ ..|+
T Consensus 79 ~h~~~V~~~~~~p~~~~---------~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~ 148 (402)
T 2aq5_A 79 GHTAPVLDIAWCPHNDN---------VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLL 148 (402)
T ss_dssp CCSSCEEEEEECTTCTT---------EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEE
T ss_pred cCCCCEEEEEeCCCCCC---------EEEEEeCCCeEEEEEccCCCCccccCCceEEecC-CCCeEEEEEECcCCCCEEE
Confidence 7999999999999 788 9999999999999999987 55677777 99999999999998 6999
Q ss_pred EEeCCCcEEEEeCCCCeEEEEe--ecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEe-ecCCCC-eEEEEE
Q 036605 90 VVGTNGMASEMKSEMGEVIREF--KASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKF-SDDVGP-LQYVSA 163 (340)
Q Consensus 90 s~~~dg~i~~wd~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~-~~~~~~-v~~~~~ 163 (340)
+++.|+.|++||+.+++.+..+ ..|...|.+++|+|++.+|++++.+ |++||+++++.+..+ ..|... +..+.|
T Consensus 149 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 149 SAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF 228 (402)
T ss_dssp EEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred EEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence 9999999999999999999888 7899999999999999999886544 999999999988888 788766 899999
Q ss_pred CCCCCEEEEEE--cCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEE-EEeCCCcEEEEECCCCC
Q 036605 164 SDGAKIIITAG--YGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVIL-AVAESGVAYSWDLKTVS 239 (340)
Q Consensus 164 s~~~~~l~s~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~s~dg~i~vwd~~~~~ 239 (340)
+|++.+|+++. ..|+.|++||++ .... ........+...+..+ .| ++++.+|+ +++.||.|++|++.+++
T Consensus 229 ~~~~~~l~~g~~~~~d~~i~iwd~~--~~~~-~~~~~~~~~~~~v~~~--~~-s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 229 VSEGKILTTGFSRMSERQVALWDTK--HLEE-PLSLQELDTSSGVLLP--FF-DPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CSTTEEEEEEECTTCCEEEEEEETT--BCSS-CSEEEECCCCSSCEEE--EE-ETTTTEEEEEETTCSCEEEEEECSST
T ss_pred cCCCcEEEEeccCCCCceEEEEcCc--cccC-CceEEeccCCCceeEE--EE-cCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 99998888862 339999999984 3222 1112223444444444 55 78888886 55579999999998765
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-29 Score=212.22 Aligned_cols=218 Identities=10% Similarity=0.076 Sum_probs=182.1
Q ss_pred CccCCCCcee---eeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCCC
Q 036605 1 IWSTNDGSLL---AEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPGG 75 (340)
Q Consensus 1 vwd~~~g~~~---~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~ 75 (340)
|||+.++... ..+... .|...|++++|+|+++ +|++|+.||.|++||+.+++ ....+.. |...
T Consensus 76 iw~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~---------~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~ 143 (337)
T 1gxr_A 76 VWDISHPGNKSPVSQLDCL--NRDNYIRSCKLLPDGC---------TLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPA 143 (337)
T ss_dssp EEETTSTTCCSCSEEEECS--CTTSBEEEEEECTTSS---------EEEEEESSSEEEEEECCCC--EEEEEEEC-SSSC
T ss_pred EEECCCCCceeeeeccccc--CCCCcEEEEEEcCCCC---------EEEEEcCCCcEEEEECCCCCcceeeeccc-CCCc
Confidence 5888776533 222211 5889999999999999 99999999999999999887 5556666 9999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeec
Q 036605 76 LAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSD 153 (340)
Q Consensus 76 v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~ 153 (340)
|.+++|+|+++.|++++.||.|++||+.+++.+..+..|...+.+++|+|++.++++++.+ |++||+++++.+..+.
T Consensus 144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~- 222 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD- 222 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-
Confidence 9999999999999999999999999999999999999999999999999999999886544 9999999998777664
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 154 DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 154 ~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
+...+.+++|+|++.++++++. ++.|++||++ .++.. ....|...+..+ .| ++++.+|++++.||.|++|
T Consensus 223 ~~~~v~~~~~s~~~~~l~~~~~-~~~i~~~~~~--~~~~~----~~~~~~~~v~~~--~~-~~~~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 223 FTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVN--KPDKY----QLHLHESCVLSL--KF-AYCGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEET-TSCEEEEETT--SSCEE----EECCCSSCEEEE--EE-CTTSSEEEEEETTSEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcC-CCcEEEEECC--CCCeE----EEcCCccceeEE--EE-CCCCCEEEEecCCCcEEEE
Confidence 6788999999999999999887 9999999984 33221 112455555555 56 8899999999999999999
Q ss_pred ECCCCCcc
Q 036605 234 DLKTVSQD 241 (340)
Q Consensus 234 d~~~~~~~ 241 (340)
++.+++..
T Consensus 293 ~~~~~~~~ 300 (337)
T 1gxr_A 293 RTPYGASI 300 (337)
T ss_dssp ETTTCCEE
T ss_pred ECCCCeEE
Confidence 99886654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-30 Score=224.35 Aligned_cols=218 Identities=14% Similarity=0.096 Sum_probs=181.4
Q ss_pred CccCCCCc------eeeeeeCCCCCCCCCeEEEEeecc----c---cccccccCceEEEEEcCCCcEEEEEccCCee---
Q 036605 1 IWSTNDGS------LLAEWKQPDGEPVVSYSCLACGFV----G---KKRRKERGTLLLALGTSNGDILAVDVLTGEM--- 64 (340)
Q Consensus 1 vwd~~~g~------~~~~~~~~~~~~~~~v~~l~~sp~----~---~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--- 64 (340)
|||+.+++ ....+. .|...|++++|+|+ + + +|++|+.||.|++||+.+++.
T Consensus 40 iw~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~g~~~~---------~l~s~~~dg~i~iw~~~~~~~~~~ 106 (397)
T 1sq9_A 40 VWDNKLLDNENPKDKSYSHF----VHKSGLHHVDVLQAIERDAFELC---------LVATTSFSGDLLFYRITREDETKK 106 (397)
T ss_dssp EEESBCCTTCCGGGGEEEEE----CCTTCEEEEEEEEEEETTTEEEE---------EEEEEETTSCEEEEEEEECTTTCC
T ss_pred EEECCCcccccCCCcceEEe----cCCCcEEEEEEecccccCCcccc---------EEEEEcCCCCEEEEEccCCccccc
Confidence 68998887 667777 78999999999999 8 8 999999999999999998886
Q ss_pred --EEEecCCC-----CCCeEEEEEe----cCCCE-EEEEeCCCcEEEEeCCC------CeEEE-----Eee-------cC
Q 036605 65 --KWKSTGRH-----PGGLAGLAFA----KKGRS-LHVVGTNGMASEMKSEM------GEVIR-----EFK-------AS 114 (340)
Q Consensus 65 --~~~~~~~h-----~~~v~~v~~~----~~~~~-l~s~~~dg~i~~wd~~~------~~~~~-----~~~-------~~ 114 (340)
...+.. | ...|.+++|+ |++.. |++++.||.|++||+.+ ++.+. .+. .|
T Consensus 107 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (397)
T 1sq9_A 107 VIFEKLDL-LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 185 (397)
T ss_dssp EEEEEECC-SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSS
T ss_pred ccceeecc-cccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCC
Confidence 777777 7 5899999999 99999 99999999999999988 65554 563 47
Q ss_pred CCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeec---C---CCCeEEEEECCCCCEEEEEEcCC---CeEEEE
Q 036605 115 EKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSD---D---VGPLQYVSASDGAKIIITAGYGE---KHLQVW 183 (340)
Q Consensus 115 ~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~---~---~~~v~~~~~s~~~~~l~s~~~~d---~~i~iw 183 (340)
...+.+++|+|++ ++++++.+ |++||+++++.+..+.. | ...|.+++|+|++.+|++++. | +.|++|
T Consensus 186 ~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~-d~~~g~i~i~ 263 (397)
T 1sq9_A 186 SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD-SNSFGCITLY 263 (397)
T ss_dssp CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE-ETTEEEEEEE
T ss_pred CCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec-CCCCceEEEE
Confidence 8899999999999 88886554 99999999999999988 8 999999999999999999888 8 999999
Q ss_pred EccCCCCCccCCceeeec-------------CCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 184 RCDISSKTVNKGPALSMR-------------HSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 184 d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
|++ .++....+. . |...+..+ .| ++++.+|++++.||.|++||+.+++.+.
T Consensus 264 d~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~--~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 264 ETE--FGERIGSLS---VPTHSSQASLGEFAHSSWVMSL--SF-NDSGETLCSAGWDGKLRFWDVKTKERIT 327 (397)
T ss_dssp ETT--TCCEEEEEC---BC--------CCBSBSSCEEEE--EE-CSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ECC--CCcccceec---cCcccccccccccccCCcEEEE--EE-CCCCCEEEEEeCCCeEEEEEcCCCceeE
Confidence 984 443322222 2 55556555 66 7899999999999999999998866544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=221.65 Aligned_cols=221 Identities=14% Similarity=0.141 Sum_probs=177.6
Q ss_pred CccCC--CCceeeeeeCCCCCCCCCeEEEEeecc--ccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCC
Q 036605 1 IWSTN--DGSLLAEWKQPDGEPVVSYSCLACGFV--GKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPG 74 (340)
Q Consensus 1 vwd~~--~g~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~ 74 (340)
|||+. +++....+. .|...|++++|+|+ ++ +|++|+.||.|++||+.+++ ....+.. |..
T Consensus 37 iw~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~---------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~ 102 (379)
T 3jrp_A 37 IFEVEGETHKLIDTLT----GHEGPVWRVDWAHPKFGT---------ILASCSYDGKVLIWKEENGRWSQIAVHAV-HSA 102 (379)
T ss_dssp EEEEETTEEEEEEEEC----CCSSCEEEEEECCGGGCS---------EEEEEETTSCEEEEEEETTEEEEEEEECC-CSS
T ss_pred EEecCCCcceeeeEec----CCCCcEEEEEeCCCCCCC---------EEEEeccCCEEEEEEcCCCceeEeeeecC-CCc
Confidence 58877 455556666 79999999999987 77 89999999999999999987 6666776 999
Q ss_pred CeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCe--EEEEeecCCCCeeEEEEcc-------------CCCEEEEecCc-
Q 036605 75 GLAGLAFAKK--GRSLHVVGTNGMASEMKSEMGE--VIREFKASEKPISSSAFLC-------------EEKIFALASSE- 136 (340)
Q Consensus 75 ~v~~v~~~~~--~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~l~~~~-------------~~~~l~~~~~~- 136 (340)
.|.+++|+|+ +..|++++.|+.|++||+.++. ....+..|...|.+++|+| ++.++++++.+
T Consensus 103 ~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 182 (379)
T 3jrp_A 103 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 182 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTS
T ss_pred ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC
Confidence 9999999999 9999999999999999998873 3445678899999999999 68888886544
Q ss_pred -EEEEECCCCc----eeEEeecCCCCeEEEEECCC---CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeee
Q 036605 137 -VRILSLENGE----EVLKFSDDVGPLQYVSASDG---AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAID 208 (340)
Q Consensus 137 -i~i~d~~~~~----~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 208 (340)
|++||++++. ....+.+|...|.+++|+|+ +.+|++++. |+.|++||++...............+...+..
T Consensus 183 ~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 261 (379)
T 3jrp_A 183 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 261 (379)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET-TSCEEEEEESSTTSCCEEEESSSSCCSSCEEE
T ss_pred eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC-CCEEEEEeCCCCCccceeeeeccccCCCcEEE
Confidence 9999998764 33567889999999999999 889999887 99999999953211111111101124445555
Q ss_pred eecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 209 CKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 209 ~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
+ .| +|++.+|++++.||.|++|++....
T Consensus 262 ~--~~-s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 262 A--SW-SLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp E--EE-CSSSCCEEEEESSSSEEEEEEEETT
T ss_pred E--EE-cCCCCEEEEecCCCcEEEEeCCCCC
Confidence 5 56 8999999999999999999987643
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=211.98 Aligned_cols=210 Identities=16% Similarity=0.238 Sum_probs=179.8
Q ss_pred CccCCCCc--eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEE
Q 036605 1 IWSTNDGS--LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~ 78 (340)
+||+.+++ ....+. .|...|++++|+|+++ +|++++.||.|++||+.+++....+.. |.+.|.+
T Consensus 123 ~~d~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~---------~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~ 188 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELT----SSAPACYALAISPDSK---------VCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASC 188 (337)
T ss_dssp EEECCCC--EEEEEEE----CSSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEE
T ss_pred EEECCCCCcceeeecc----cCCCceEEEEECCCCC---------EEEEEeCCCcEEEEeCCCCceeeeeec-ccCceEE
Confidence 58888877 445555 7889999999999999 999999999999999999999988888 9999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEeecCCC
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSDDVG 156 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~ 156 (340)
++|+|+++.|++++.||.|++||+.+++.+..+. +...+.+++|+|++.++++++ +.|++||+.+++. ..+..|..
T Consensus 189 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~ 266 (337)
T 1gxr_A 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHES 266 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSS
T ss_pred EEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCcc
Confidence 9999999999999999999999999999887765 677899999999999998865 4499999998864 56778999
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.+.+++|+|++++|++++. |+.|++||+ ..++.. ....+...+..+ .+ ++++.+|++++.||.|++|++.
T Consensus 267 ~v~~~~~~~~~~~l~~~~~-dg~i~~~~~--~~~~~~----~~~~~~~~v~~~--~~-s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 267 CVLSLKFAYCGKWFVSTGK-DNLLNAWRT--PYGASI----FQSKESSSVLSC--DI-SVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp CEEEEEECTTSSEEEEEET-TSEEEEEET--TTCCEE----EEEECSSCEEEE--EE-CTTSCEEEEEETTSCEEEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CCcEEEEEC--CCCeEE----EEecCCCcEEEE--EE-CCCCCEEEEecCCCeEEEEEEe
Confidence 9999999999999999888 999999998 344332 223455555555 55 8999999999999999999963
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=220.43 Aligned_cols=215 Identities=13% Similarity=0.182 Sum_probs=182.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||..+|+....+. ..|...|++++|+|+++ +|++|+.||.|++||+.+++.+..+.+ |...|.+++
T Consensus 117 lw~~~~~~~~~~~~---~~~~~~v~~v~~s~~~~---------~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~ 183 (401)
T 4aez_A 117 VWNADSGSVSALAE---TDESTYVASVKWSHDGS---------FLSVGLGNGLVDIYDVESQTKLRTMAG-HQARVGCLS 183 (401)
T ss_dssp EEETTTCCEEEEEE---CCTTCCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEE
T ss_pred EeeCCCCcEeEeee---cCCCCCEEEEEECCCCC---------EEEEECCCCeEEEEECcCCeEEEEecC-CCCceEEEE
Confidence 69999999888777 34889999999999999 999999999999999999999999987 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCC-CCeEEEEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEeecCCCC
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSE-MGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSDDVGP 157 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~~~~ 157 (340)
|+ +..|++++.||.|++||++ .+..+..+..|...|.+++|+|++.++++++. .|++||+.+++.+..+..|...
T Consensus 184 ~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 261 (401)
T 4aez_A 184 WN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAA 261 (401)
T ss_dssp EE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSC
T ss_pred EC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcce
Confidence 95 6799999999999999998 56677788899999999999999999998764 4999999999999999999999
Q ss_pred eEEEEECCCCCEEEEEEc--CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEE--eCCCcEEEE
Q 036605 158 LQYVSASDGAKIIITAGY--GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAV--AESGVAYSW 233 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--s~dg~i~vw 233 (340)
|.+++|+|++..+++++. .|+.|++||++ +++.... +.+...+..+ .| ++++.+++++ +.||.|++|
T Consensus 262 v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~--~~~~~~~----~~~~~~v~~~--~~-s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 262 VKAVAWCPWQSNLLATGGGTMDKQIHFWNAA--TGARVNT----VDAGSQVTSL--IW-SPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp CCEEEECTTSTTEEEEECCTTTCEEEEEETT--TCCEEEE----EECSSCEEEE--EE-CSSSSEEEEEECTTTCEEEEE
T ss_pred EEEEEECCCCCCEEEEecCCCCCEEEEEECC--CCCEEEE----EeCCCcEEEE--EE-CCCCCeEEEEeecCCCcEEEE
Confidence 999999998766666543 49999999983 4433222 2344445544 55 8899999994 489999999
Q ss_pred ECCCCC
Q 036605 234 DLKTVS 239 (340)
Q Consensus 234 d~~~~~ 239 (340)
++.++.
T Consensus 333 ~~~~~~ 338 (401)
T 4aez_A 333 SYSSSG 338 (401)
T ss_dssp EEETTE
T ss_pred ecCCcc
Confidence 987754
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=228.21 Aligned_cols=217 Identities=16% Similarity=0.146 Sum_probs=175.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||..+++....+. .+ ..+.+..|+|+++ +|++|+.||.|++||+.+++....+.. |.+.|++++
T Consensus 82 i~d~~~~~~~~~~~----~~-~~~~~~~~~~~~~---------~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~ 146 (420)
T 3vl1_A 82 LFNTIIRDGSKMLK----RA-DYTAVDTAKLQMR---------RFILGTTEGDIKVLDSNFNLQREIDQA-HVSEITKLK 146 (420)
T ss_dssp EEECCSEETTTTSC----SC-CEEEEEEECSSSC---------EEEEEETTSCEEEECTTSCEEEEETTS-SSSCEEEEE
T ss_pred EEEecccceeeEEe----cC-CceEEEEEecCCC---------EEEEEECCCCEEEEeCCCcceeeeccc-ccCccEEEE
Confidence 46766665544443 23 4455567899999 999999999999999999988877777 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeec---CC
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSD---DV 155 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~---~~ 155 (340)
|+|++++|++++.|+.|++||+.+++.+..+..|...|.+++|+|++.+|++++.+ |++||+++++.+..+.. |.
T Consensus 147 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 226 (420)
T 3vl1_A 147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH 226 (420)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTT
T ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCC
Confidence 99999999999999999999999999999999999999999999999999886554 99999999988888764 33
Q ss_pred ---------------------CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCC
Q 036605 156 ---------------------GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPN 214 (340)
Q Consensus 156 ---------------------~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (340)
..+.+++|+|++++|++++. |+.|++||++ .++... .+...|...+..+ .|
T Consensus 227 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~--~~~~~~--~~~~~~~~~v~~~--~~- 298 (420)
T 3vl1_A 227 DGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-SGVITVHNVF--SKEQTI--QLPSKFTCSCNSL--TV- 298 (420)
T ss_dssp CCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-TSCEEEEETT--TCCEEE--EECCTTSSCEEEE--EE-
T ss_pred CCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-CCeEEEEECC--CCceeE--EcccccCCCceeE--EE-
Confidence 34444556889999999887 9999999994 333221 1222455555555 56
Q ss_pred CCCCC-EEEEEeCCCcEEEEECCCCCc
Q 036605 215 GEDGT-VILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 215 ~~~~~-~l~~~s~dg~i~vwd~~~~~~ 240 (340)
+|++. +|++++.||.|++||+.+++.
T Consensus 299 ~~~~~~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 299 DGNNANYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred eCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence 78888 999999999999999988643
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=221.47 Aligned_cols=225 Identities=12% Similarity=0.131 Sum_probs=177.6
Q ss_pred CccCCCCceeeeeeCC-CCCCCCCeEEEEeecc----ccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCC
Q 036605 1 IWSTNDGSLLAEWKQP-DGEPVVSYSCLACGFV----GKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGG 75 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~-~~~~~~~v~~l~~sp~----~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~ 75 (340)
|||..+++.+..+... ...|...|++++|+|+ ++ +|++|+.||.|++||+.+++.+..+.+ |...
T Consensus 48 vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~ 117 (366)
T 3k26_A 48 LYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP---------LLAVAGSRGIIRIINPITMQCIKHYVG-HGNA 117 (366)
T ss_dssp EEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE---------EEEEEETTCEEEEECTTTCCEEEEEES-CCSC
T ss_pred EEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC---------EEEEecCCCEEEEEEchhceEeeeecC-CCCc
Confidence 5888877766544411 0146788999999999 56 899999999999999999999989988 9999
Q ss_pred eEEEEEec-CCCEEEEEeCCCcEEEEeCCCCeEEEEe---ecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeE
Q 036605 76 LAGLAFAK-KGRSLHVVGTNGMASEMKSEMGEVIREF---KASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVL 149 (340)
Q Consensus 76 v~~v~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~ 149 (340)
|.+++|+| ++..|++++.||.|++||+.+++.+..+ ..|...|.+++|+|++.++++++. .|++||+++++.+.
T Consensus 118 i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 197 (366)
T 3k26_A 118 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN 197 (366)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHH
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccc
Confidence 99999999 8999999999999999999999988887 678999999999999999988654 49999999876544
Q ss_pred Eee----------------------------cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCcc--------
Q 036605 150 KFS----------------------------DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVN-------- 193 (340)
Q Consensus 150 ~~~----------------------------~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~-------- 193 (340)
.+. .|...|.+++|+ +.++++++. |+.|++||++.......
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~ 274 (366)
T 3k26_A 198 AIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC-ENAIVCWKPGKMEDDIDKIKPSESN 274 (366)
T ss_dssp HHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS-SSEEEEEEESSTTCCGGGCCTTCCC
T ss_pred ccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec-CCEEEEEeCCCccccccccccCCcc
Confidence 333 389999999998 668888777 99999999842211000
Q ss_pred -CCceeeecCCCeeeeeecCCCCCC--CCEEEEEeCCCcEEEEECCCCCcc
Q 036605 194 -KGPALSMRHSPVAIDCKNSPNGED--GTVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 194 -~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
........|...+..+ .+ +++ +.+|++++.||.|++||+.+++..
T Consensus 275 ~~~~~~~~~~~~~v~~~--~~-s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 275 VTILGRFDYSQCDIWYM--RF-SMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp EEEEEEEECSSCCSSCC--CC-EECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred hheeccccccCCcEEEE--EE-cCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 0011111233333333 44 667 999999999999999999886543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-29 Score=229.57 Aligned_cols=207 Identities=17% Similarity=0.303 Sum_probs=178.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+||..... +..+. .|...|.+++|+|+++ +|++|+.||.|++||. +++.+..+.. |...|.+++
T Consensus 329 ~w~~~~~~-~~~~~----~~~~~v~~~~~s~~g~---------~l~~~~~dg~v~~~~~-~~~~~~~~~~-~~~~v~~~~ 392 (577)
T 2ymu_A 329 LWNRNGQH-LQTLT----GHSSSVWGVAFSPDGQ---------TIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVA 392 (577)
T ss_dssp EEETTSCE-EEEEC----CCSSCEEEEEECTTSS---------EEEEEETTSEEEEEET-TCCEEEEEEC-CSSCEEEEE
T ss_pred EEeCCCCe-eEEEe----CCCCCEEEEEECCCCC---------EEEEEeCCCEEEEEcC-CCCEEEEecC-CCCCeEEEE
Confidence 57765443 34454 6889999999999999 9999999999999995 5677888887 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v 158 (340)
|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+|++++|++++.+ |++||. +++.+..+.+|...|
T Consensus 393 ~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v 470 (577)
T 2ymu_A 393 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 470 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCE
Confidence 9999999999999999999995 577888899999999999999999999886554 999996 566788899999999
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
.+++|+|++++|++++. |+.|++||. .++....+. .|...+..+ .| +|++.+|++++.||.|++||.
T Consensus 471 ~~~~~spd~~~las~~~-d~~i~iw~~---~~~~~~~~~---~h~~~v~~l--~~-s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASD-DKTVKLWNR---NGQLLQTLT---GHSSSVRGV--AF-SPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EEEEECTTSCEEEEEET-TSEEEEEET---TSCEEEEEE---CCSSCEEEE--EE-CTTSSCEEEEETTSEEEEECT
T ss_pred EEEEEcCCCCEEEEEeC-CCEEEEEcC---CCCEEEEEe---CCCCCEEEE--EE-cCCCCEEEEEECcCEEEEEeC
Confidence 99999999999999888 999999996 344333333 676667666 66 899999999999999999995
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-29 Score=233.77 Aligned_cols=217 Identities=14% Similarity=0.133 Sum_probs=177.6
Q ss_pred CccCCCC-----ceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCC
Q 036605 1 IWSTNDG-----SLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGG 75 (340)
Q Consensus 1 vwd~~~g-----~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~ 75 (340)
|||+.++ .....+. +|...|++++|+|+++ +|++|+.||+|++||+.+++....+.+ |.+.
T Consensus 409 ~W~~~~~~~~~~~~~~~~~----~h~~~v~~v~~s~~g~---------~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~ 474 (694)
T 3dm0_A 409 LWKLTKDDKAYGVAQRRLT----GHSHFVEDVVLSSDGQ---------FALSGSWDGELRLWDLAAGVSTRRFVG-HTKD 474 (694)
T ss_dssp EEECCCSTTCSCEEEEEEE----CCSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTTEEEEEEEC-CSSC
T ss_pred EEEccCCCcccccccceec----CCCCcEEEEEECCCCC---------EEEEEeCCCcEEEEECCCCcceeEEeC-CCCC
Confidence 5877653 3345566 8999999999999999 999999999999999999999989988 9999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEe---ecCCCCeeEEEEccCC--CEEEEec--CcEEEEECCCCcee
Q 036605 76 LAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREF---KASEKPISSSAFLCEE--KIFALAS--SEVRILSLENGEEV 148 (340)
Q Consensus 76 v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~i~~l~~~~~~--~~l~~~~--~~i~i~d~~~~~~~ 148 (340)
|.+++|+|+++.|++++.|+.|++||.......... .+|...|.+++|+|++ ..+++++ +.|++||+++++..
T Consensus 475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554 (694)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence 999999999999999999999999998765443332 3577889999999987 4677754 44999999999988
Q ss_pred EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCC
Q 036605 149 LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESG 228 (340)
Q Consensus 149 ~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg 228 (340)
..+.+|...|.+++|+|++++|++++. |+.|++||++ +++....+ .+...+..+ +| +|++.++++++ ++
T Consensus 555 ~~~~~h~~~v~~v~~spdg~~l~sg~~-Dg~i~iwd~~--~~~~~~~~----~~~~~v~~~--~~-sp~~~~l~~~~-~~ 623 (694)
T 3dm0_A 555 STLAGHTGYVSTVAVSPDGSLCASGGK-DGVVLLWDLA--EGKKLYSL----EANSVIHAL--CF-SPNRYWLCAAT-EH 623 (694)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEET-TSBCEEEETT--TTEEEECC----BCSSCEEEE--EE-CSSSSEEEEEE-TT
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECC--CCceEEEe----cCCCcEEEE--EE-cCCCcEEEEEc-CC
Confidence 999999999999999999999999888 9999999993 44333222 233334444 55 78888877766 55
Q ss_pred cEEEEECCCCCccC
Q 036605 229 VAYSWDLKTVSQDE 242 (340)
Q Consensus 229 ~i~vwd~~~~~~~~ 242 (340)
.|++||+.+...+.
T Consensus 624 ~i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 624 GIKIWDLESKSIVE 637 (694)
T ss_dssp EEEEEETTTTEEEE
T ss_pred CEEEEECCCCCChh
Confidence 59999999876554
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-31 Score=228.68 Aligned_cols=208 Identities=7% Similarity=-0.034 Sum_probs=163.8
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC--eeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCc
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG--EMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGM 96 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~ 96 (340)
.+..+|+|++|+|+++ +|++|+.||.|++||+.++ +....+.+ |.+.|.+++|+|++++|++++.|+.
T Consensus 9 ~~~~~v~~~~~s~~g~---------~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~d~~ 78 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRT---------EFVTTTATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSNRIVTCSQDRN 78 (377)
T ss_dssp ECSSCCSCCEECSSSS---------EEECCCSSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTCCEEEEETTSS
T ss_pred cCCCcEEEEEECCCCC---------EEEEecCCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCCEEEEEeCCCe
Confidence 3567999999999999 9999999999999999988 66777777 9999999999999999999999999
Q ss_pred EEEEeCCCCe---EEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCce---eEEeec-CCCCeEEEEECCCC
Q 036605 97 ASEMKSEMGE---VIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEE---VLKFSD-DVGPLQYVSASDGA 167 (340)
Q Consensus 97 i~~wd~~~~~---~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~---~~~~~~-~~~~v~~~~~s~~~ 167 (340)
|++||+.++. ....+..|...|.+++|+|++++|++++.+ |++||+.+++. ...+.. |...|.+++|+|++
T Consensus 79 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 158 (377)
T 3dwl_C 79 AYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN 158 (377)
T ss_dssp EEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS
T ss_pred EEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC
Confidence 9999999877 566777899999999999999999886544 99999998863 677777 99999999999999
Q ss_pred CEEEEEEcCCCeEEEEEccCCCCCc------------cCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 168 KIIITAGYGEKHLQVWRCDISSKTV------------NKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
.+|++++. |+.|++||++...... .......+.|...+..+ .| +|++.+|++++.||.|++||+
T Consensus 159 ~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 159 VLLAAGCA-DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAV--GF-SPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp SEEEEEES-SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEE--EE-CTTSSCEEEEETTTEEC-CEE
T ss_pred CEEEEEeC-CCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEE--EE-CCCCCEEEEEeCCCcEEEEEC
Confidence 99999888 9999999984211000 01111112455555555 56 899999999999999999999
Q ss_pred CCCCc
Q 036605 236 KTVSQ 240 (340)
Q Consensus 236 ~~~~~ 240 (340)
.+++.
T Consensus 235 ~~~~~ 239 (377)
T 3dwl_C 235 SAPEQ 239 (377)
T ss_dssp CSTTS
T ss_pred CCCCC
Confidence 98765
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=219.75 Aligned_cols=219 Identities=16% Similarity=0.228 Sum_probs=179.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc-CCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL-TGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~h~~~v~~v 79 (340)
|||+.+++.+..+. .|...|.+++| +++ +|++|+.||.|++||+. .+.....+.+ |.+.|.++
T Consensus 160 iwd~~~~~~~~~~~----~~~~~v~~~~~--~~~---------~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~ 223 (401)
T 4aez_A 160 IYDVESQTKLRTMA----GHQARVGCLSW--NRH---------VLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGL 223 (401)
T ss_dssp EEETTTCCEEEEEC----CCSSCEEEEEE--ETT---------EEEEEETTSEEEEEETTSSSCEEEEEEC-CSSCEEEE
T ss_pred EEECcCCeEEEEec----CCCCceEEEEE--CCC---------EEEEEcCCCCEEEEecccCcceeeEEcC-CCCCeeEE
Confidence 69999999888887 89999999999 456 89999999999999998 4556777777 99999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC-EEEEe----cCcEEEEECCCCceeEEeecC
Q 036605 80 AFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEK-IFALA----SSEVRILSLENGEEVLKFSDD 154 (340)
Q Consensus 80 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~----~~~i~i~d~~~~~~~~~~~~~ 154 (340)
+|+|+++.|++++.|+.|++||+.+++.+..+..|...|.+++|+|++. +++++ ++.|++||+.+++.+..+. +
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~ 302 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-A 302 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-C
T ss_pred EEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-C
Confidence 9999999999999999999999999999999999999999999999775 45554 3449999999998888775 5
Q ss_pred CCCeEEEEECCCCCEEEEEE-cCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 155 VGPLQYVSASDGAKIIITAG-YGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 155 ~~~v~~~~~s~~~~~l~s~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
...+.+++|+|++.++++++ ..|+.|++||++ .+.......+ ..|...+..+ .| ++++.+|++++.||.|++|
T Consensus 303 ~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~--~~~~~~~~~~-~~h~~~v~~~--~~-s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 303 GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS--SSGLTKQVDI-PAHDTRVLYS--AL-SPDGRILSTAASDENLKFW 376 (401)
T ss_dssp SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE--TTEEEEEEEE-ECCSSCCCEE--EE-CTTSSEEEEECTTSEEEEE
T ss_pred CCcEEEEEECCCCCeEEEEeecCCCcEEEEecC--CccceeEEEe-cCCCCCEEEE--EE-CCCCCEEEEEeCCCcEEEE
Confidence 67899999999999999864 239999999994 3322222111 2455555555 55 8999999999999999999
Q ss_pred ECCCCCccC
Q 036605 234 DLKTVSQDE 242 (340)
Q Consensus 234 d~~~~~~~~ 242 (340)
++.+++.+.
T Consensus 377 ~~~~~~~~~ 385 (401)
T 4aez_A 377 RVYDGDHVK 385 (401)
T ss_dssp ECCC-----
T ss_pred ECCCCcccc
Confidence 999877665
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=226.60 Aligned_cols=212 Identities=8% Similarity=-0.003 Sum_probs=166.0
Q ss_pred CccCCCC--ceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe---eEEEecCCCCCC
Q 036605 1 IWSTNDG--SLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE---MKWKSTGRHPGG 75 (340)
Q Consensus 1 vwd~~~g--~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~~h~~~ 75 (340)
|||+.++ +....+. +|...|++++|+|+++ +|++|+.||.|++||+.+++ ....+.. |...
T Consensus 37 iw~~~~~~~~~~~~~~----~h~~~v~~~~~s~~~~---------~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~-~~~~ 102 (377)
T 3dwl_C 37 LYEQDGNGWKHARTFS----DHDKIVTCVDWAPKSN---------RIVTCSQDRNAYVYEKRPDGTWKQTLVLLR-LNRA 102 (377)
T ss_dssp EEEEETTEEEECCCBC----CCSSCEEEEEECTTTC---------CEEEEETTSSEEEC------CCCCEEECCC-CSSC
T ss_pred EEEccCCceEEEEEEe----cCCceEEEEEEeCCCC---------EEEEEeCCCeEEEEEcCCCCceeeeeEecc-cCCc
Confidence 5888887 5666666 7999999999999998 89999999999999999887 5666676 9999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE---EEEeec-CCCCeeEEEEccCCCEEEEecCc--EEEEECC------
Q 036605 76 LAGLAFAKKGRSLHVVGTNGMASEMKSEMGEV---IREFKA-SEKPISSSAFLCEEKIFALASSE--VRILSLE------ 143 (340)
Q Consensus 76 v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~-~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~------ 143 (340)
|.+++|+|+++.|++++.|+.|++||+.+++. ...+.. |...|.+++|+|++++|++++.+ |++||+.
T Consensus 103 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 182 (377)
T 3dwl_C 103 ATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDA 182 (377)
T ss_dssp EEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-
T ss_pred eEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCC
Confidence 99999999999999999999999999998873 566777 89999999999999999886554 9999985
Q ss_pred ------------CCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCc----cCCceeeecCCCeee
Q 036605 144 ------------NGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTV----NKGPALSMRHSPVAI 207 (340)
Q Consensus 144 ------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~ 207 (340)
.++.+..+ .|...|.+++|+|++++|++++. |+.|++||++ .++. ...+. .|...+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iwd~~--~~~~~~~~~~~~~---~~~~~v~ 255 (377)
T 3dwl_C 183 KPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH-DSSVTIAYPS--APEQPPRALITVK---LSQLPLR 255 (377)
T ss_dssp CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET-TTEEC-CEEC--STTSCEEECCCEE---CSSSCEE
T ss_pred Cccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC-CCcEEEEECC--CCCCcceeeEeec---CCCCceE
Confidence 34455666 89999999999999999999888 9999999994 4443 33333 5665566
Q ss_pred eeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 208 DCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 208 ~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.+ .| ++++.+|++++.++ +.+|+...
T Consensus 256 ~~--~~-s~~~~~l~~~~~~~-~~~~~~~~ 281 (377)
T 3dwl_C 256 SL--LW-ANESAIVAAGYNYS-PILLQGNE 281 (377)
T ss_dssp EE--EE-EETTEEEEEESSSS-EEEECCCC
T ss_pred EE--EE-cCCCCEEEEEcCCc-EEEEEeCC
Confidence 55 56 78999999888776 55776653
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=218.90 Aligned_cols=198 Identities=12% Similarity=0.145 Sum_probs=160.0
Q ss_pred CCCCeEEEEeeccccccccccCceEEEE--EcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLAL--GTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~--g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
+...+.+++|||||+ +|++ |+.|++|+|||+.+++.+..+. |.+.|.+++|+|+|++|++++.+ .+
T Consensus 132 ~~~~~~~v~fSpDg~---------~la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s~~-~~ 199 (365)
T 4h5i_A 132 ADDYTKLVYISREGT---------VAAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYITGS-SL 199 (365)
T ss_dssp TTCCEEEEEECTTSS---------CEEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEECSS-CE
T ss_pred cccCEEEEEEcCCCC---------EEEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEeccce-eE
Confidence 445689999999998 7664 4578999999999999888876 77889999999999999998865 56
Q ss_pred EEEeCCCCeEEEE--eecCCCCeeEEEEccCCCEEEEec--C----cEEEEECCCCce----eEEeecCCCCeEEEEECC
Q 036605 98 SEMKSEMGEVIRE--FKASEKPISSSAFLCEEKIFALAS--S----EVRILSLENGEE----VLKFSDDVGPLQYVSASD 165 (340)
Q Consensus 98 ~~wd~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~--~----~i~i~d~~~~~~----~~~~~~~~~~v~~~~~s~ 165 (340)
.+|+..+++.+.. ...|...+.+++|+|++..+++++ + .+++|++..... ...+.+|...|++++|+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp 279 (365)
T 4h5i_A 200 EVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM 279 (365)
T ss_dssp EEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred EEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence 6666667765543 445777899999999999998743 2 278888876643 345688999999999999
Q ss_pred CCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 166 GAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 166 ~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
+|++|++++. |+.|+|||+ .+++....+ ..+|...+..+ .| +||+.+|++|+.|++|+||++..
T Consensus 280 dg~~lasgs~-D~~V~iwd~--~~~~~~~~~--~~gH~~~V~~v--~f-Spdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 280 KGELAVLASN-DNSIALVKL--KDLSMSKIF--KQAHSFAITEV--TI-SPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TSCEEEEEET-TSCEEEEET--TTTEEEEEE--TTSSSSCEEEE--EE-CTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCceEEEcC-CCEEEEEEC--CCCcEEEEe--cCcccCCEEEE--EE-CCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999888 999999998 454433221 12677778777 77 89999999999999999999964
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=234.97 Aligned_cols=207 Identities=15% Similarity=0.195 Sum_probs=174.1
Q ss_pred CCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCC-----eeEEEecCCCCCCeEEEEEecCCCEEEEEe
Q 036605 19 EPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTG-----EMKWKSTGRHPGGLAGLAFAKKGRSLHVVG 92 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 92 (340)
+|...|+|++|+|++ . +|++|+.||+|++||+.+. .....+.+ |...|.+++|+|++++|++|+
T Consensus 380 ~H~~~V~~v~~~~~~~~---------~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNAD---------IIVSASRDKSIILWKLTKDDKAYGVAQRRLTG-HSHFVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp CCSSCEEEEECCTTCCS---------EEEEEETTSEEEEEECCCSTTCSCEEEEEEEC-CSSCEEEEEECTTSSEEEEEE
T ss_pred cCCceeEEEEecCCCCC---------EEEEEeCCCcEEEEEccCCCcccccccceecC-CCCcEEEEEECCCCCEEEEEe
Confidence 899999999999986 6 8999999999999998763 34566777 999999999999999999999
Q ss_pred CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEe---ecCCCCeEEEEECCCC
Q 036605 93 TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKF---SDDVGPLQYVSASDGA 167 (340)
Q Consensus 93 ~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~---~~~~~~v~~~~~s~~~ 167 (340)
.||.|++||+.++.....+.+|...|.+++|+|++.+|++++.+ |++||+......... .+|...|.+++|+|++
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 99999999999999999999999999999999999999886655 999998765333222 4688899999999987
Q ss_pred --CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCC
Q 036605 168 --KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKT 244 (340)
Q Consensus 168 --~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~ 244 (340)
..+++++. |+.|++||++ ..+....+. .|...+..+ .+ +|++.+|++++.||.|++||+.+++.+..+
T Consensus 530 ~~~~l~s~s~-d~~v~vwd~~--~~~~~~~~~---~h~~~v~~v--~~-spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~ 599 (694)
T 3dm0_A 530 LQPTIVSASW-DKTVKVWNLS--NCKLRSTLA---GHTGYVSTV--AV-SPDGSLCASGGKDGVVLLWDLAEGKKLYSL 599 (694)
T ss_dssp SSCEEEEEET-TSCEEEEETT--TCCEEEEEC---CCSSCEEEE--EE-CTTSSEEEEEETTSBCEEEETTTTEEEECC
T ss_pred CcceEEEEeC-CCeEEEEECC--CCcEEEEEc---CCCCCEEEE--EE-eCCCCEEEEEeCCCeEEEEECCCCceEEEe
Confidence 57888777 9999999993 433332222 566666666 66 899999999999999999999987765533
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=218.90 Aligned_cols=225 Identities=12% Similarity=0.106 Sum_probs=182.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee---EEEecCCCCCCeE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM---KWKSTGRHPGGLA 77 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~h~~~v~ 77 (340)
|||+.+++....+... .|...|.+++|+|+++ +|++|+.||.|++||+..+.. ...+...|...|.
T Consensus 78 vwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~---------~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~ 146 (372)
T 1k8k_C 78 VWTLKGRTWKPTLVIL--RINRAARCVRWAPNEK---------KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 146 (372)
T ss_dssp EEEEETTEEEEEEECC--CCSSCEEEEEECTTSS---------EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EEECCCCeeeeeEEee--cCCCceeEEEECCCCC---------EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence 5888888766555433 6889999999999999 999999999999999998762 3444344899999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeC------------------CCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--E
Q 036605 78 GLAFAKKGRSLHVVGTNGMASEMKS------------------EMGEVIREFKASEKPISSSAFLCEEKIFALASSE--V 137 (340)
Q Consensus 78 ~v~~~~~~~~l~s~~~dg~i~~wd~------------------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i 137 (340)
+++|+|++++|++++.||.|++||+ ..++.+..+..|...+.+++|+|++.++++++.+ |
T Consensus 147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 226 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226 (372)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence 9999999999999999999999995 4678888898999999999999999999886554 9
Q ss_pred EEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCC--cc----------------------
Q 036605 138 RILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKT--VN---------------------- 193 (340)
Q Consensus 138 ~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~--~~---------------------- 193 (340)
++||+.+++.+..+..|...+.+++|+|++.+++++ . |+.|++|+++...+. ..
T Consensus 227 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (372)
T 1k8k_C 227 CLADADKKMAVATLASETLPLLAVTFITESSLVAAG-H-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN 304 (372)
T ss_dssp EEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-T-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred EEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-e-CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhh
Confidence 999999999999999999999999999999877764 6 999999999531121 00
Q ss_pred ----C-C-------ceeeecCCCeeeeeecCCCCCCC---CEEEEEeCCCcEEEEECCCCCc
Q 036605 194 ----K-G-------PALSMRHSPVAIDCKNSPNGEDG---TVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 194 ----~-~-------~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
. . ..+...|...+..+ .+.++++ .+|++++.||.|++|++.+++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 305 LDKKASSEGSAAAGAGLDSLHKNSVSQI--SVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp CCCCC---------CCCSSSSSSCEEEE--EEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred cccccccccCccccccccccccCCccee--EEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 0 0 11112566666666 4435777 9999999999999999987544
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-29 Score=214.84 Aligned_cols=205 Identities=14% Similarity=0.103 Sum_probs=174.6
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
+|...|++++|+|+++ +|++|+.||.|++||+.+++....+.+ |.+.|.+++|+|++++|++++.||.|+
T Consensus 30 ~h~~~v~~~~~s~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGD---------LLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp CCSSCEEEEEECTTSC---------EEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred EeeceEEEEEEcCCCC---------EEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 8999999999999999 999999999999999999999999988 999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec-------CcEEEEECCCCc-----------eeEEeecCCC--Ce
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS-------SEVRILSLENGE-----------EVLKFSDDVG--PL 158 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-------~~i~i~d~~~~~-----------~~~~~~~~~~--~v 158 (340)
+||+.+++.+..+. +...+.+++|+|++.+++++. +.|++||+..+. .+..+..|.. .+
T Consensus 100 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred EEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 99999999988887 788999999999999998743 569999997653 3344555665 89
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.+++|+|++++|++++. |+.|++||++.. ......+. .|...+..+ .| ++++.+|++++.||.|++||+.++
T Consensus 179 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~---~~~~~v~~~--~~-~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHK-DGKISKYDVSNN-YEYVDSID---LHEKSISDM--QF-SPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp EEEEECGGGCEEEEEET-TSEEEEEETTTT-TEEEEEEE---CCSSCEEEE--EE-CTTSSEEEEEETTSEEEEEETTTC
T ss_pred eEEEEcCCCCEEEEEcC-CCEEEEEECCCC-cEeEEEEe---cCCCceeEE--EE-CCCCCEEEEecCCceEEEEECCCC
Confidence 99999999999999887 999999998421 22222222 455555555 55 789999999999999999999986
Q ss_pred CccC
Q 036605 239 SQDE 242 (340)
Q Consensus 239 ~~~~ 242 (340)
+...
T Consensus 251 ~~~~ 254 (369)
T 3zwl_B 251 QVLK 254 (369)
T ss_dssp CEEE
T ss_pred ceee
Confidence 6554
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-29 Score=219.16 Aligned_cols=221 Identities=17% Similarity=0.276 Sum_probs=175.9
Q ss_pred CccC----CCCc------eeeeeeCCC-C-----CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee
Q 036605 1 IWST----NDGS------LLAEWKQPD-G-----EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM 64 (340)
Q Consensus 1 vwd~----~~g~------~~~~~~~~~-~-----~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~ 64 (340)
|||+ .+++ ....+.... . +|...|++++|+|+++ +|++|+.||.|++|| .+++.
T Consensus 72 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---------~l~~~~~dg~i~i~~-~~~~~ 141 (425)
T 1r5m_A 72 LARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN---------SIVTGVENGELRLWN-KTGAL 141 (425)
T ss_dssp EEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS---------EEEEEETTSCEEEEE-TTSCE
T ss_pred EEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC---------EEEEEeCCCeEEEEe-CCCCe
Confidence 5777 7777 344444211 1 1678999999999999 999999999999999 66777
Q ss_pred EEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCC---------------eeEEEEccCCCE
Q 036605 65 KWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKP---------------ISSSAFLCEEKI 129 (340)
Q Consensus 65 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~---------------i~~l~~~~~~~~ 129 (340)
...+.. |...|.+++|+|+++.|++++.|+.|++||+.+++.+..+..+... +.+++|+|++.+
T Consensus 142 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (425)
T 1r5m_A 142 LNVLNF-HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF 220 (425)
T ss_dssp EEEECC-CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEE
T ss_pred eeeccC-CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEE
Confidence 888887 9999999999999999999999999999999999998888877766 999999998765
Q ss_pred EEE-ecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeee
Q 036605 130 FAL-ASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAID 208 (340)
Q Consensus 130 l~~-~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 208 (340)
++. .++.|++||+.+++.+..+..|...|.+++|+|++.+|++++. |+.|++||++ .++....+. .|...+..
T Consensus 221 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~~~~~~---~~~~~i~~ 294 (425)
T 1r5m_A 221 VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-DGTLRIWHGG--NGNSQNCFY---GHSQSIVS 294 (425)
T ss_dssp EEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET-TSCEEEECSS--SBSCSEEEC---CCSSCEEE
T ss_pred EEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC-CCEEEEEECC--CCccceEec---CCCccEEE
Confidence 544 3344999999999888899999999999999999999999887 9999999984 433332222 45555555
Q ss_pred eecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 209 CKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 209 ~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+ .| ++++ ++++++.||.|++||+.+++.+.
T Consensus 295 ~--~~-~~~~-~l~~~~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 295 A--SW-VGDD-KVISCSMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp E--EE-ETTT-EEEEEETTSEEEEEETTTTEEEE
T ss_pred E--EE-CCCC-EEEEEeCCCcEEEEECCCCcEeE
Confidence 5 55 6777 99999999999999998766544
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-29 Score=216.82 Aligned_cols=213 Identities=12% Similarity=0.044 Sum_probs=176.8
Q ss_pred CccCCCCc--eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEe--cCCCCCCe
Q 036605 1 IWSTNDGS--LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKS--TGRHPGGL 76 (340)
Q Consensus 1 vwd~~~g~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~~h~~~v 76 (340)
|||+.+++ .+..+. +|...|++++|+|+++ +|++|+.||.|++||+.+++....+ .. |...|
T Consensus 34 i~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v 99 (372)
T 1k8k_C 34 IYEKSGNKWVQVHELK----EHNGQVTGVDWAPDSN---------RIVTCGTDRNAYVWTLKGRTWKPTLVILR-INRAA 99 (372)
T ss_dssp EEEEETTEEEEEEEEE----CCSSCEEEEEEETTTT---------EEEEEETTSCEEEEEEETTEEEEEEECCC-CSSCE
T ss_pred EEeCCCCcEEeeeeec----CCCCcccEEEEeCCCC---------EEEEEcCCCeEEEEECCCCeeeeeEEeec-CCCce
Confidence 68888887 677777 7899999999999999 9999999999999999998754443 44 89999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCeE---EEE-eecCCCCeeEEEEccCCCEEEEecC--cEEEEEC--------
Q 036605 77 AGLAFAKKGRSLHVVGTNGMASEMKSEMGEV---IRE-FKASEKPISSSAFLCEEKIFALASS--EVRILSL-------- 142 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~-~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~-------- 142 (340)
.+++|+|++++|++++.|+.|++||+..+.. ... ...|...|.+++|+|++.++++++. .|++||+
T Consensus 100 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 179 (372)
T 1k8k_C 100 RCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 179 (372)
T ss_dssp EEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCC
T ss_pred eEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccc
Confidence 9999999999999999999999999988762 223 3567889999999999999988654 4999995
Q ss_pred ----------CCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecC
Q 036605 143 ----------ENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNS 212 (340)
Q Consensus 143 ----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
..++.+..+..|...|.+++|+|++.+|++++. |+.|++||++ .++....+. .+...+..+ .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~~~~~~---~~~~~v~~~--~ 251 (372)
T 1k8k_C 180 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-DSTVCLADAD--KKMAVATLA---SETLPLLAV--T 251 (372)
T ss_dssp CCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-TTEEEEEEGG--GTTEEEEEE---CSSCCEEEE--E
T ss_pred ccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC-CCEEEEEECC--CCceeEEEc---cCCCCeEEE--E
Confidence 467778888899999999999999999999887 9999999994 444333332 444445554 5
Q ss_pred CCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 213 PNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 213 ~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
| ++++.+++++ .||.|++|++..
T Consensus 252 ~-~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 252 F-ITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp E-EETTEEEEEE-TTSSCEEEEEET
T ss_pred E-ecCCCEEEEE-eCCeEEEEEccC
Confidence 5 7888888777 899999999987
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-28 Score=211.94 Aligned_cols=217 Identities=13% Similarity=0.064 Sum_probs=182.5
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.+++.+..+. +|...|++++|+|+++ +|++++.||.|++||+.+++....+. |...|.+++
T Consensus 58 vwd~~~~~~~~~~~----~h~~~v~~~~~~~~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~ 122 (369)
T 3zwl_B 58 VWYSLNGERLGTLD----GHTGTIWSIDVDCFTK---------YCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVE 122 (369)
T ss_dssp EEETTTCCEEEEEC----CCSSCEEEEEECTTSS---------EEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEE
T ss_pred EEeCCCchhhhhhh----hcCCcEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEE
Confidence 69999999998887 8999999999999999 99999999999999999999888877 788999999
Q ss_pred EecCCCEEEEEeCC-----CcEEEEeCCCCe-----------EEEEeecCCC--CeeEEEEccCCCEEEEecCc--EEEE
Q 036605 81 FAKKGRSLHVVGTN-----GMASEMKSEMGE-----------VIREFKASEK--PISSSAFLCEEKIFALASSE--VRIL 140 (340)
Q Consensus 81 ~~~~~~~l~s~~~d-----g~i~~wd~~~~~-----------~~~~~~~~~~--~i~~l~~~~~~~~l~~~~~~--i~i~ 140 (340)
|+|+++.|++++.+ +.|.+||+..+. ....+..+.. .+.+++|+|+++++++++.+ |++|
T Consensus 123 ~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 202 (369)
T 3zwl_B 123 FSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202 (369)
T ss_dssp ECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred EccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEE
Confidence 99999999999999 999999987653 2333445555 89999999999999886554 9999
Q ss_pred ECCC-CceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCC
Q 036605 141 SLEN-GEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGT 219 (340)
Q Consensus 141 d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (340)
|+.+ ++.+..+..|...|.+++|+|++.+|++++. |+.|++||++ .++....+ .+...+..+ .+ ++++.
T Consensus 203 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~--~~~~~~~~----~~~~~~~~~--~~-~~~~~ 272 (369)
T 3zwl_B 203 DVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR-DTNSFLVDVS--TLQVLKKY----ETDCPLNTA--VI-TPLKE 272 (369)
T ss_dssp ETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-TSEEEEEETT--TCCEEEEE----ECSSCEEEE--EE-CSSSS
T ss_pred ECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC-CceEEEEECC--CCceeeee----cCCCCceeE--Ee-cCCCc
Confidence 9998 6778888999999999999999999999887 9999999983 43332222 233334444 45 89999
Q ss_pred EEEEEeCCC--------------cEEEEECCCCCccC
Q 036605 220 VILAVAESG--------------VAYSWDLKTVSQDE 242 (340)
Q Consensus 220 ~l~~~s~dg--------------~i~vwd~~~~~~~~ 242 (340)
++++++.++ .+++||..+++.+.
T Consensus 273 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 273 FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp EEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred eEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 999999998 89999998876655
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=220.43 Aligned_cols=218 Identities=13% Similarity=0.116 Sum_probs=176.8
Q ss_pred CccCCCCce-----eeeeeCCCCCC-----CCCeEEEEee----ccccccccccCceE-EEEEcCCCcEEEEEccC----
Q 036605 1 IWSTNDGSL-----LAEWKQPDGEP-----VVSYSCLACG----FVGKKRRKERGTLL-LALGTSNGDILAVDVLT---- 61 (340)
Q Consensus 1 vwd~~~g~~-----~~~~~~~~~~~-----~~~v~~l~~s----p~~~~~~~~~~~~~-l~~g~~dg~i~i~d~~~---- 61 (340)
|||+.+++. ...+. .| ...|.+++|+ |+++ + |++|+.||.|++||+.+
T Consensus 95 iw~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 95 FYRITREDETKKVIFEKLD----LLDSDMKKHSFWALKWGASNDRLLS---------HRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EEEEEECTTTCCEEEEEEC----CSCTTGGGSCEEEEEEECCC----C---------EEEEEEETTSCEEEEEEESSSSH
T ss_pred EEEccCCcccccccceeec----ccccccCCCcEEEEEEeeccCCCCc---------eEEEEEeCCCcEEEEeCCccccc
Confidence 588877775 66665 55 6899999999 9998 8 99999999999999998
Q ss_pred --CeeEE-----Eec------CCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeec---C---CCCeeEEE
Q 036605 62 --GEMKW-----KST------GRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKA---S---EKPISSSA 122 (340)
Q Consensus 62 --~~~~~-----~~~------~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~---~---~~~i~~l~ 122 (340)
++.+. .+. ..|...|.+++|+|++ .|++++.||.|++||+++++.+..+.. | ...+.+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence 55444 442 2388899999999999 999999999999999999999999988 8 89999999
Q ss_pred EccCCCEEEEec-----CcEEEEECCCCceeEEeec-------------CCCCeEEEEECCCCCEEEEEEcCCCeEEEEE
Q 036605 123 FLCEEKIFALAS-----SEVRILSLENGEEVLKFSD-------------DVGPLQYVSASDGAKIIITAGYGEKHLQVWR 184 (340)
Q Consensus 123 ~~~~~~~l~~~~-----~~i~i~d~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd 184 (340)
|+|++.+|++++ +.|++||+.+++.+..+.. |...|.+++|+|++.+|++++. |+.|++||
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd 319 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWD 319 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-TSEEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC-CCeEEEEE
Confidence 999999998843 5699999999999999988 9999999999999999999887 99999999
Q ss_pred ccCCCCCccCCceee---ecC---------------CCeeeeeecCCCCCCC----------CEEEEEeCCCcEEEEECC
Q 036605 185 CDISSKTVNKGPALS---MRH---------------SPVAIDCKNSPNGEDG----------TVILAVAESGVAYSWDLK 236 (340)
Q Consensus 185 ~~~~~~~~~~~~~~~---~~~---------------~~~~~~~~~~~~~~~~----------~~l~~~s~dg~i~vwd~~ 236 (340)
++ .++....+... ..| ...+..+ .| ++++ .+|++++.||.|++|++.
T Consensus 320 ~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~--~~-~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 320 VK--TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV--KF-LKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TT--TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE--EE-ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred cC--CCceeEEEecccCcccchhhhhccccccccccCCceeEE--Ee-ccccccccccccccceEEEecCCCcEEEEEcC
Confidence 93 44332222100 023 4555555 55 6777 799999999999999987
Q ss_pred CC
Q 036605 237 TV 238 (340)
Q Consensus 237 ~~ 238 (340)
++
T Consensus 395 ~g 396 (397)
T 1sq9_A 395 GG 396 (397)
T ss_dssp C-
T ss_pred CC
Confidence 65
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-29 Score=237.84 Aligned_cols=219 Identities=15% Similarity=0.159 Sum_probs=189.6
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||..+|+.+..+. .|...|++++|+|+++ +|++|+.||.|++||+.+++....+.+ |.+.|++++
T Consensus 39 iwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~---------~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~ 104 (814)
T 3mkq_A 39 IWNYETQVEVRSIQ----VTETPVRAGKFIARKN---------WIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIA 104 (814)
T ss_dssp EEETTTTEEEEEEE----CCSSCEEEEEEEGGGT---------EEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEE
T ss_pred EEECCCCceEEEEe----cCCCcEEEEEEeCCCC---------EEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEEEEE
Confidence 69999999999888 7899999999999999 999999999999999999999999988 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCC-eEEEEeecCCCCeeEEEEcc-CCCEEEEec--CcEEEEECCCCceeEEeecCC-
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMG-EVIREFKASEKPISSSAFLC-EEKIFALAS--SEVRILSLENGEEVLKFSDDV- 155 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~- 155 (340)
|+|++..|++++.||.|++||+.++ .....+..|...+.+++|+| ++..+++++ +.|++||+.++.....+..+.
T Consensus 105 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 184 (814)
T 3mkq_A 105 VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184 (814)
T ss_dssp ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC
Confidence 9999999999999999999999987 66777888999999999999 788888765 449999999888877776555
Q ss_pred CCeEEEEECC--CCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 156 GPLQYVSASD--GAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 156 ~~v~~~~~s~--~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
..+..++|+| ++.++++++. |+.|++||+ ..+.....+. .|...+..+ .| +|++.++++++.||.|++|
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~-dg~i~~~d~--~~~~~~~~~~---~~~~~v~~~--~~-~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASD-DLTIKIWDY--QTKSCVATLE---GHMSNVSFA--VF-HPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECT-TSEEEEEET--TTTEEEEEEE---CCSSCEEEE--EE-CSSSSEEEEEETTSCEEEE
T ss_pred CCEEEEEEEECCCCCEEEEEeC-CCEEEEEEC--CCCcEEEEEc---CCCCCEEEE--EE-cCCCCEEEEEeCCCeEEEE
Confidence 8899999999 9999999777 999999998 3444333222 455555555 55 8999999999999999999
Q ss_pred ECCCCCccC
Q 036605 234 DLKTVSQDE 242 (340)
Q Consensus 234 d~~~~~~~~ 242 (340)
|+.+++...
T Consensus 256 d~~~~~~~~ 264 (814)
T 3mkq_A 256 NSSTYKVEK 264 (814)
T ss_dssp ETTTCSEEE
T ss_pred ECCCCcEEE
Confidence 998866544
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-30 Score=231.00 Aligned_cols=213 Identities=11% Similarity=-0.000 Sum_probs=172.5
Q ss_pred CccCCCCcee----eeeeCCCCCCCCCeEEEEeecc------ccccccccCceEEEEEcCCCcEEEEEccCCee------
Q 036605 1 IWSTNDGSLL----AEWKQPDGEPVVSYSCLACGFV------GKKRRKERGTLLLALGTSNGDILAVDVLTGEM------ 64 (340)
Q Consensus 1 vwd~~~g~~~----~~~~~~~~~~~~~v~~l~~sp~------~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~------ 64 (340)
|||+.++++. ..+. +|...|.+++|+|+ +. +||+|+.||+|++||+.++..
T Consensus 187 iWd~~~~~~~~~~~~~l~----~~~~~V~~v~wsp~~~~~~~~~---------~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 187 IFKMNTSTLHCVKVQTIV----HSFGEVWDLKWHEGCHAPHLVG---------CLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp EEEEETTTCCEEEEEEEE----ECCCSEEEEEECSSCCCSSSSC---------EEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred EEEccCCCCCceEEEEEE----ecCCcEEEEEECCCCCCCCCCc---------eEEEEecCCeEEEEEcCCCccccccce
Confidence 6888777643 2344 67889999999997 35 899999999999999987642
Q ss_pred -----EEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-EEEEeecCCCCeeEE--EEccCC-CEEEEecC
Q 036605 65 -----KWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGE-VIREFKASEKPISSS--AFLCEE-KIFALASS 135 (340)
Q Consensus 65 -----~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~i~~l--~~~~~~-~~l~~~~~ 135 (340)
...+.+ |.+.|++++|+++ ..|++|+.||.|++||+.++. +...+..|...|.++ +++|++ .+|++++.
T Consensus 254 ~~~~p~~~l~~-h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~ 331 (524)
T 2j04_B 254 MCEKPSLTLSL-ADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV 331 (524)
T ss_dssp CCCSCSEEECC-TTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred eecCceEEEEc-CCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence 235666 9999999999985 489999999999999999763 455688999999999 568887 88888655
Q ss_pred c--EEEEECCCCceeEEeecCCC--CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeec
Q 036605 136 E--VRILSLENGEEVLKFSDDVG--PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKN 211 (340)
Q Consensus 136 ~--i~i~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (340)
+ |++||+++++.+..+.+|.. .|.+++|+|++..+++++. |++|++||++ .+.....+. +|...+..+
T Consensus 332 D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~-d~tv~lwd~~--~~~~~~~l~---gH~~~V~sv-- 403 (524)
T 2j04_B 332 DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG-ASSLRAVPSR--AAFAVHPLV---SRETTITAI-- 403 (524)
T ss_dssp TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECS-SSEEEEEETT--CTTCCEEEE---ECSSCEEEE--
T ss_pred CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCC-CCcEEEEECc--ccccceeee---cCCCceEEE--
Confidence 4 99999999887777766653 5789999999999888777 9999999984 333323233 677778777
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 212 SPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 212 ~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.| +|++.+|++|+.||.|++||+..
T Consensus 404 a~-Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 404 GV-SRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EC-CSSCCBCEEEETTTEEECCBSCS
T ss_pred Ee-CCCCCeEEEEECCCEEEEEechH
Confidence 77 89999999999999999999865
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=234.75 Aligned_cols=212 Identities=13% Similarity=0.072 Sum_probs=180.1
Q ss_pred eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEE
Q 036605 9 LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSL 88 (340)
Q Consensus 9 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l 88 (340)
+...+. +|...|+|++|+|+++ +|++|+.||.|++||+.+++....+.. |.+.|.+++|+|++++|
T Consensus 5 ~~~~~~----~h~~~v~~i~~sp~~~---------~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l 70 (814)
T 3mkq_A 5 IKKTFS----NRSDRVKGIDFHPTEP---------WVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWI 70 (814)
T ss_dssp CEEEEE----EECSCEEEEEECSSSS---------EEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEE
T ss_pred cceeee----cCCCceEEEEECCCCC---------EEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCCEE
Confidence 345566 7899999999999999 999999999999999999999999998 99999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCC-ceeEEeecCCCCeEEEEECC
Q 036605 89 HVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENG-EEVLKFSDDVGPLQYVSASD 165 (340)
Q Consensus 89 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~ 165 (340)
++++.||.|++||+.+++.+..+..|...|.+++|+|++.++++++.+ |++||+.++ .....+.+|...|.+++|+|
T Consensus 71 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p 150 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150 (814)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc
Confidence 999999999999999999999999999999999999999999886544 999999987 56677889999999999999
Q ss_pred -CCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCC--CCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 166 -GAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGE--DGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 166 -~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
++..|++++. |+.|++||++ .+.... .+...+...+..+ .| ++ ++.++++++.||.|++||+.+++...
T Consensus 151 ~~~~~l~~~~~-dg~v~vwd~~--~~~~~~--~~~~~~~~~v~~~--~~-~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 222 (814)
T 3mkq_A 151 KDPSTFASGCL-DRTVKVWSLG--QSTPNF--TLTTGQERGVNYV--DY-YPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (814)
T ss_dssp TEEEEEEEEET-TSEEEEEETT--CSSCSE--EEECCCTTCCCEE--EE-CCSTTCCEEEEECTTSEEEEEETTTTEEEE
T ss_pred CCCCEEEEEeC-CCeEEEEECC--CCccee--EEecCCCCCEEEE--EE-EECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence 7888888777 9999999983 333222 2222232333333 33 44 89999999999999999998766544
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-28 Score=206.47 Aligned_cols=213 Identities=15% Similarity=0.182 Sum_probs=176.1
Q ss_pred CceeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCe-----eEEEecCCCCCCeEEEE
Q 036605 7 GSLLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGE-----MKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 7 g~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-----~~~~~~~~h~~~v~~v~ 80 (340)
.++..+++ +|...|+|++|+|++ + +|++|+.||+|++||+.+++ ....+.+ |...|.+++
T Consensus 28 ~~l~~tL~----GH~~~V~~v~~sp~~~~---------~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-h~~~V~~~~ 93 (340)
T 4aow_A 28 MTLRGTLK----GHNGWVTQIATTPQFPD---------MILSASRDKTIIMWKLTRDETNYGIPQRALRG-HSHFVSDVV 93 (340)
T ss_dssp EEEEEEEC----CCSSCEEEEEECTTCTT---------EEEEEETTSCEEEEEECCSSSCSEEEEEEECC-CSSCEEEEE
T ss_pred eEEEEEEC----CccCCEEEEEEeCCCCC---------EEEEEcCCCeEEEEECCCCCcccceeeEEEeC-CCCCEEEEE
Confidence 34555676 899999999999984 7 99999999999999987654 4556777 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCcee-EEeecCCCC
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEV-LKFSDDVGP 157 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~-~~~~~~~~~ 157 (340)
|+|++++|++++.|+.|++|+............+...+..+.+++++.++++++.+ +++||+...... ..+.+|...
T Consensus 94 ~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~ 173 (340)
T 4aow_A 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 173 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSC
T ss_pred ECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCc
Confidence 99999999999999999999999999888888888899999999999999886554 999999776544 445788899
Q ss_pred eEEEEECCCC--CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 158 LQYVSASDGA--KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 158 v~~~~~s~~~--~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
+..++|++++ .++++++. |+.|++||+ ..++....+. .|...+..+ .+ +|++.+|++++.||.|++||+
T Consensus 174 v~~~~~~~~~~~~~~~s~~~-d~~i~i~d~--~~~~~~~~~~---~h~~~v~~~--~~-s~~~~~l~s~s~Dg~i~iwd~ 244 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGW-DKLVKVWNL--ANCKLKTNHI---GHTGYLNTV--TV-SPDGSLCASGGKDGQAMLWDL 244 (340)
T ss_dssp EEEEEECSCSSSCEEEEEET-TSCEEEEET--TTTEEEEEEC---CCSSCEEEE--EE-CTTSSEEEEEETTCEEEEEET
T ss_pred ccceEEccCCCCcEEEEEcC-CCEEEEEEC--CCCceeeEec---CCCCcEEEE--EE-CCCCCEEEEEeCCCeEEEEEe
Confidence 9999998764 45677666 999999998 3443333222 566666665 56 899999999999999999999
Q ss_pred CCCCccC
Q 036605 236 KTVSQDE 242 (340)
Q Consensus 236 ~~~~~~~ 242 (340)
.+.+.+.
T Consensus 245 ~~~~~~~ 251 (340)
T 4aow_A 245 NEGKHLY 251 (340)
T ss_dssp TTTEEEE
T ss_pred ccCceee
Confidence 8866554
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-28 Score=219.70 Aligned_cols=212 Identities=12% Similarity=0.143 Sum_probs=180.2
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.+++.+..+. +|...|++++|+|++. |++|+.||+|++||+.+++....+.+ |.+.|.+++
T Consensus 146 vwd~~~~~~~~~~~----~h~~~V~~l~~~~~~~----------l~s~s~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~ 210 (464)
T 3v7d_B 146 VYDSINKKFLLQLS----GHDGGVWALKYAHGGI----------LVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLD 210 (464)
T ss_dssp EEETTTTEEEEEEC----CCSSCEEEEEECSTTE----------EEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEE
T ss_pred EEECCCCcEEEEEe----CCCcCEEEEEEcCCCE----------EEEEeCCCCEEEEECCCCcEEEEECC-CCCccEEEE
Confidence 69999999998888 8999999999998766 99999999999999999999999988 999999999
Q ss_pred Ee--cCCCEEEEEeCCCcEEEEeCCCCeE-----------------------EEEeecCCCCeeEEEEccCCCEEEEecC
Q 036605 81 FA--KKGRSLHVVGTNGMASEMKSEMGEV-----------------------IREFKASEKPISSSAFLCEEKIFALASS 135 (340)
Q Consensus 81 ~~--~~~~~l~s~~~dg~i~~wd~~~~~~-----------------------~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 135 (340)
|+ +++..|++++.|+.|++||+.++.. +..+.+|...+.++ ++++.++++++.
T Consensus 211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~ 288 (464)
T 3v7d_B 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY 288 (464)
T ss_dssp EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence 98 5778999999999999999987652 34566777777766 677888888654
Q ss_pred c--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCC
Q 036605 136 E--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSP 213 (340)
Q Consensus 136 ~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (340)
+ |++||+.+++.+..+.+|...|.+++|+|++.++++++. |+.|++||+ .+++....+. .|...+..+ .+
T Consensus 289 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-dg~i~vwd~--~~~~~~~~~~---~h~~~v~~~--~~ 360 (464)
T 3v7d_B 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM-DTTIRIWDL--ENGELMYTLQ---GHTALVGLL--RL 360 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET-TSCEEEEET--TTTEEEEEEC---CCSSCEEEE--EE
T ss_pred CCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEC--CCCcEEEEEe---CCCCcEEEE--EE
Confidence 4 999999999999999999999999999999999999888 999999998 4444433333 566666665 33
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 214 NGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 214 ~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
++.++++++.||.|++||+.+...
T Consensus 361 ---~~~~l~s~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 361 ---SDKFLVSAAADGSIRGWDANDYSR 384 (464)
T ss_dssp ---CSSEEEEEETTSEEEEEETTTCCE
T ss_pred ---cCCEEEEEeCCCcEEEEECCCCce
Confidence 368999999999999999987543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-29 Score=219.74 Aligned_cols=223 Identities=17% Similarity=0.143 Sum_probs=176.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC----CeeEEEecCCCCCCe
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT----GEMKWKSTGRHPGGL 76 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~----~~~~~~~~~~h~~~v 76 (340)
|||+.++........ ..|...|++++|+|+++ +|++|+.||.|++||+.+ .+....+.+ |.+.|
T Consensus 49 iw~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~---------~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~-h~~~v 116 (416)
T 2pm9_A 49 LWSLLAADSEKPIAS--LQVDSKFNDLDWSHNNK---------IIAGALDNGSLELYSTNEANNAINSMARFSN-HSSSV 116 (416)
T ss_dssp EEESSSGGGCSCSCC--CCCSSCEEEEEECSSSS---------CEEEEESSSCEEEECCSSTTSCCCEEEECCC-SSSCC
T ss_pred EEEccCCCCCcEEEE--EecCCceEEEEECCCCC---------eEEEEccCCeEEEeecccccccccchhhccC-Cccce
Confidence 578777653322221 15788999999999998 899999999999999987 346777777 99999
Q ss_pred EEEEEecC-CCEEEEEeCCCcEEEEeCCCCe------EEEE---eecCCCCeeEEEEccC-CCEEEEecCc--EEEEECC
Q 036605 77 AGLAFAKK-GRSLHVVGTNGMASEMKSEMGE------VIRE---FKASEKPISSSAFLCE-EKIFALASSE--VRILSLE 143 (340)
Q Consensus 77 ~~v~~~~~-~~~l~s~~~dg~i~~wd~~~~~------~~~~---~~~~~~~i~~l~~~~~-~~~l~~~~~~--i~i~d~~ 143 (340)
.+++|+|+ +.+|++++.|+.|++||+.+++ .... +..|...+.+++|+|+ +.++++++.+ |++||++
T Consensus 117 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK 196 (416)
T ss_dssp CEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred EEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence 99999998 8999999999999999999886 3322 3568889999999999 7888886544 9999999
Q ss_pred CCceeEEeecC------CCCeEEEEECCCC-CEEEEEEcCCC---eEEEEEccCCCCCccCCceeeecCCCeeeeeecCC
Q 036605 144 NGEEVLKFSDD------VGPLQYVSASDGA-KIIITAGYGEK---HLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSP 213 (340)
Q Consensus 144 ~~~~~~~~~~~------~~~v~~~~~s~~~-~~l~s~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (340)
+++.+..+..+ ...+.+++|+|++ .++++++. |+ .|++||++.. ......+ ...|...+..+ .|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~~~~i~~~d~~~~-~~~~~~~--~~~~~~~v~~~--~~ 270 (416)
T 2pm9_A 197 AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG-SDNDPSILIWDLRNA-NTPLQTL--NQGHQKGILSL--DW 270 (416)
T ss_dssp TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC-CSSSCCCCEEETTST-TSCSBCC--CSCCSSCEEEE--EE
T ss_pred CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC-CCCCceEEEEeCCCC-CCCcEEe--ecCccCceeEE--Ee
Confidence 99888888766 7899999999997 56777666 88 9999999421 1211111 11355556655 56
Q ss_pred CCC-CCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 214 NGE-DGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 214 ~~~-~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+| ++.+|++++.||.|++||+.+++.+.
T Consensus 271 -s~~~~~~l~s~~~dg~v~~wd~~~~~~~~ 299 (416)
T 2pm9_A 271 -CHQDEHLLLSSGRDNTVLLWNPESAEQLS 299 (416)
T ss_dssp -CSSCSSCEEEEESSSEEEEECSSSCCEEE
T ss_pred -CCCCCCeEEEEeCCCCEEEeeCCCCccce
Confidence 66 89999999999999999998876554
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=214.42 Aligned_cols=220 Identities=10% Similarity=0.068 Sum_probs=171.5
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeec-cccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC--CCCCCeE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGF-VGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG--RHPGGLA 77 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--~h~~~v~ 77 (340)
|||+.+++....+... +|...|++++|+| ++. +|++|+.||.|++||+.+. ....+.. .|...|.
T Consensus 100 iwd~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~---------~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~ 167 (383)
T 3ei3_B 100 LWDYDVQNKTSFIQGM--GPGDAITGMKFNQFNTN---------QLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYC 167 (383)
T ss_dssp EEETTSTTCEEEECCC--STTCBEEEEEEETTEEE---------EEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEE
T ss_pred EEeCCCcccceeeecC--CcCCceeEEEeCCCCCC---------EEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeE
Confidence 6999988877766533 6899999999999 668 8999999999999999864 4445543 2458899
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC-EEEEecCc--EEEEECCC----CceeEE
Q 036605 78 GLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEK-IFALASSE--VRILSLEN----GEEVLK 150 (340)
Q Consensus 78 ~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~~--i~i~d~~~----~~~~~~ 150 (340)
+++|+|+++.|++++.|+.|++||+ +++.+..+..|...|.+++|+|++. ++++++.+ |++||+++ +..+..
T Consensus 168 ~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 246 (383)
T 3ei3_B 168 CVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE 246 (383)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE
T ss_pred EEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE
Confidence 9999999999999999999999999 5778888999999999999999998 78876544 99999987 555555
Q ss_pred eecCCCCeEEEEECC-CCCEEEEEEcCCCeEEEEEccCCCCCccCCceee----ecCCC----------eeeeeecCCCC
Q 036605 151 FSDDVGPLQYVSASD-GAKIIITAGYGEKHLQVWRCDISSKTVNKGPALS----MRHSP----------VAIDCKNSPNG 215 (340)
Q Consensus 151 ~~~~~~~v~~~~~s~-~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~----------~~~~~~~~~~~ 215 (340)
+ .|...|.+++|+| ++.+|++++. |+.|++||++ .+.....+... ..+.. ....+ .+ +
T Consensus 247 ~-~~~~~v~~~~~s~~~~~~l~~~~~-d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~-s 319 (383)
T 3ei3_B 247 M-PHEKPVNAAYFNPTDSTKLLTTDQ-RNEIRVYSSY--DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVA--GR-Y 319 (383)
T ss_dssp E-ECSSCEEEEEECTTTSCEEEEEES-SSEEEEEETT--BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEE--EC-B
T ss_pred e-cCCCceEEEEEcCCCCCEEEEEcC-CCcEEEEECC--CCccccccccccccccccccceEEeccCCCCceEE--Ee-c
Confidence 5 6999999999999 9999999887 9999999994 33322222100 00110 11111 23 4
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 216 EDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 216 ~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+++.+ +++.||.|++||+.+++.+.
T Consensus 320 ~dg~~--s~s~d~~i~iwd~~~~~~~~ 344 (383)
T 3ei3_B 320 PDDQL--LLNDKRTIDIYDANSGGLVH 344 (383)
T ss_dssp CCTTT--CTTCCCCEEEEETTTCCEEE
T ss_pred CCccc--ccCCCCeEEEEecCCCceee
Confidence 55555 67789999999998876654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-29 Score=220.39 Aligned_cols=219 Identities=13% Similarity=0.172 Sum_probs=179.8
Q ss_pred CccCCC----CceeeeeeCCCCCCCCCeEEEEeecc-ccccccccCceEEEEEcCCCcEEEEEccCCe------eEEEe-
Q 036605 1 IWSTND----GSLLAEWKQPDGEPVVSYSCLACGFV-GKKRRKERGTLLLALGTSNGDILAVDVLTGE------MKWKS- 68 (340)
Q Consensus 1 vwd~~~----g~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~------~~~~~- 68 (340)
|||+.+ ......+. .|...|++++|+|+ ++ +|++|+.||.|++||+.+++ ....+
T Consensus 93 vw~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~---------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 159 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFS----NHSSSVKTVKFNAKQDN---------VLASGGNNGEIFIWDMNKCTESPSNYTPLTPG 159 (416)
T ss_dssp EECCSSTTSCCCEEEECC----CSSSCCCEEEECSSSTT---------BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC
T ss_pred Eeecccccccccchhhcc----CCccceEEEEEcCCCCC---------EEEEEcCCCeEEEEECCCCccccccccccccc
Confidence 588876 34556665 79999999999998 67 89999999999999999876 33332
Q ss_pred --cCCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCeEEEEeecC------CCCeeEEEEccCC-CEEEEe--cC-
Q 036605 69 --TGRHPGGLAGLAFAKK-GRSLHVVGTNGMASEMKSEMGEVIREFKAS------EKPISSSAFLCEE-KIFALA--SS- 135 (340)
Q Consensus 69 --~~~h~~~v~~v~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------~~~i~~l~~~~~~-~~l~~~--~~- 135 (340)
.. |...|.+++|+|+ +..|++++.|+.|++||+.+++.+..+..+ ...+.+++|+|++ .+++++ ++
T Consensus 160 ~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 238 (416)
T 2pm9_A 160 QSMS-SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238 (416)
T ss_dssp CSCC-SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred cccC-CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC
Confidence 44 8999999999998 789999999999999999999998888776 7889999999997 567663 33
Q ss_pred --cEEEEECCCC-ceeEEee-cCCCCeEEEEECC-CCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeee
Q 036605 136 --EVRILSLENG-EEVLKFS-DDVGPLQYVSASD-GAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCK 210 (340)
Q Consensus 136 --~i~i~d~~~~-~~~~~~~-~~~~~v~~~~~s~-~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (340)
.|++||++++ ..+..+. +|...|.+++|+| ++.+|++++. |+.|++||+ .+++....+. .|...+..+
T Consensus 239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-dg~v~~wd~--~~~~~~~~~~---~~~~~v~~~- 311 (416)
T 2pm9_A 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR-DNTVLLWNP--ESAEQLSQFP---ARGNWCFKT- 311 (416)
T ss_dssp SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES-SSEEEEECS--SSCCEEEEEE---CSSSCCCCE-
T ss_pred CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC-CCCEEEeeC--CCCccceeec---CCCCceEEE-
Confidence 7999999986 5667777 8999999999999 8999999888 999999998 4444433333 555555555
Q ss_pred cCCCCCCC-CEEEEEeCCCcEEEEECCCCCccC
Q 036605 211 NSPNGEDG-TVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 211 ~~~~~~~~-~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.| +|++ .+|++++.||.|++|++.......
T Consensus 312 -~~-s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 312 -KF-APEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp -EE-CTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred -EE-CCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 56 7887 899999999999999998865443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-27 Score=211.15 Aligned_cols=223 Identities=15% Similarity=0.239 Sum_probs=180.2
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.+|++...+... +|...|+|++|+|+|+ +||+|+.||.|++||+.+++.+..+.+ |...+.+++
T Consensus 129 lWd~~tg~~~~~~~~~--~~~~~V~sv~fspdg~---------~lasgs~Dg~v~iWd~~~~~~~~~~~~-h~~~v~~~s 196 (420)
T 4gga_A 129 LWSASSGDILQLLQME--QPGEYISSVAWIKEGN---------YLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLS 196 (420)
T ss_dssp EEETTTCCEEEEEECC--STTCCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEE
T ss_pred EEECCCCCEEEEEEec--CCCCcEEEEEECCCCC---------EEEEEECCCeEEEEEcCCCcEEEEEeC-CCCceEEEe
Confidence 6999999988877744 6788999999999999 999999999999999999999999988 999999988
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCC-eEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCce----eEEeec
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMG-EVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEE----VLKFSD 153 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~----~~~~~~ 153 (340)
|+ +..|++|+.|+.+.+||.... ..+..+.+|...+..+.++|++.++++++.+ +++|+..+++. +..+..
T Consensus 197 ~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~ 274 (420)
T 4gga_A 197 WN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274 (420)
T ss_dssp EE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC
T ss_pred eC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecc
Confidence 85 679999999999999998864 4556788999999999999999999986654 99999987653 456678
Q ss_pred CCCCeEEEEECCCCCEEEEE--EcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEe--CCCc
Q 036605 154 DVGPLQYVSASDGAKIIITA--GYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVA--ESGV 229 (340)
Q Consensus 154 ~~~~v~~~~~s~~~~~l~s~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s--~dg~ 229 (340)
|...|.+++|+|++..+++. +..|+.|++||+ .++.....+ .....+..+ .+ .+++..+++++ .||.
T Consensus 275 ~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~--~t~~~~~~~----~~~~~v~~~--~~-~~~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV--CSGACLSAV----DAHSQVCSI--LW-SPHYKELISGHGFAQNQ 345 (420)
T ss_dssp CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET--TTTEEEEEE----ECSSCEEEE--EE-ETTTTEEEEEECTTTCC
T ss_pred cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC--Cccccceee----ccccceeee--ee-cCCCCeEEEEEecCCCE
Confidence 89999999999987655432 345999999998 444433222 223333333 44 67777777665 7899
Q ss_pred EEEEECCCCCccCCCCC
Q 036605 230 AYSWDLKTVSQDEKTNP 246 (340)
Q Consensus 230 i~vwd~~~~~~~~~~~p 246 (340)
|+|||+.+++.+..+..
T Consensus 346 I~iwd~~~~~~v~~l~g 362 (420)
T 4gga_A 346 LVIWKYPTMAKVAELKG 362 (420)
T ss_dssp EEEEETTTCCEEEEECC
T ss_pred EEEEECCCCcEEEEEcC
Confidence 99999998877664443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-28 Score=205.67 Aligned_cols=218 Identities=20% Similarity=0.295 Sum_probs=176.1
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC----------
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG---------- 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---------- 70 (340)
|||+.+|+++..+... +|...|+|++|+|+++ +|++|+.||+|++||+++++.+..+.+
T Consensus 49 iWd~~tg~~~~~~~~~--~~~~~V~~v~~~~~~~---------~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~ 117 (318)
T 4ggc_A 49 LWSASSGDILQLLQME--QPGEYISSVAWIKEGN---------YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW 117 (318)
T ss_dssp EEETTTCCEEEEEECC--STTCCEEEEEECTTSS---------EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EEECCCCCEEEEEEec--CCCCeEEEEEECCCCC---------EEEEEECCCcEEEeecCCceeEEEecCccceEEEeec
Confidence 6999999999888744 7888999999999999 999999999999999998876544321
Q ss_pred ------------------------------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE----EEEeecCCC
Q 036605 71 ------------------------------RHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEV----IREFKASEK 116 (340)
Q Consensus 71 ------------------------------~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~ 116 (340)
.|...+..+.|+++++.|++++.|+.|++||+.+++. ......+..
T Consensus 118 ~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 197 (318)
T 4ggc_A 118 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197 (318)
T ss_dssp ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCS
T ss_pred CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCC
Confidence 2667788889999999999999999999999987653 334556778
Q ss_pred CeeEEEEccCCCEEE-E--ec--CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEE-cCCCeEEEEEccCCCC
Q 036605 117 PISSSAFLCEEKIFA-L--AS--SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAG-YGEKHLQVWRCDISSK 190 (340)
Q Consensus 117 ~i~~l~~~~~~~~l~-~--~~--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~d~~i~iwd~~~~~~ 190 (340)
.+.+++++|++..++ . ++ +.|++||.......... .+...+..+.|++++..+++++ ..|+.|+|||+ .++
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~--~~~ 274 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY--PTM 274 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET--TTC
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEEC--CCC
Confidence 899999999875443 2 32 23999999988665544 4677899999999999888765 34899999999 455
Q ss_pred CccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 191 TVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
+....+. +|...+..+ .| +|++.+|++|+.||.|+|||+...
T Consensus 275 ~~~~~l~---gH~~~V~~l--~~-spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 275 AKVAELK---GHTSRVLSL--TM-SPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEEC---CCSSCEEEE--EE-CTTSSCEEEEETTTEEEEECCSCC
T ss_pred cEEEEEc---CCCCCEEEE--EE-cCCCCEEEEEecCCeEEEEECCCC
Confidence 5554444 687777777 67 899999999999999999998653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-28 Score=213.84 Aligned_cols=224 Identities=13% Similarity=0.083 Sum_probs=178.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeec-cccccccccCceEEEEEcCCCcEEEEEccCCeeEEEec----------
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGF-VGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKST---------- 69 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---------- 69 (340)
||+...++....+. +|...|+|++|+| +++ +|++|+.||.|++||+.+++....+.
T Consensus 27 v~~~~~~~~~~~~~----~h~~~v~~~~~s~~~~~---------~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 93 (408)
T 4a11_B 27 VLGLELNKDRDVER----IHGGGINTLDIEPVEGR---------YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRD 93 (408)
T ss_dssp HHTEEECTTEEECC----CCSSCEEEEEECTTTCC---------EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTT
T ss_pred eeccccCcceeeee----ccCCcEEEEEEecCCCC---------EEEEEcCCCeEEEEECCCCcccceEecccccccccc
Confidence 46777777777666 7999999999999 999 99999999999999999876443332
Q ss_pred --CCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCC---CEEEEecC--cEEEEE
Q 036605 70 --GRHPGGLAGLAFAK-KGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEE---KIFALASS--EVRILS 141 (340)
Q Consensus 70 --~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~---~~l~~~~~--~i~i~d 141 (340)
..|...|.+++|+| ++..|++++.||.|++||+.+++....+. +...+.++.++|.+ .++++++. .|++||
T Consensus 94 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 94 HPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp CTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred ccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 23899999999999 77899999999999999999999887776 67789999999854 47877544 499999
Q ss_pred CCCCceeEEeecCCCCeEEEEECCCCCE-EEEEEcCCCeEEEEEccCCCCCcc-----------CCceeeecCCCeeeee
Q 036605 142 LENGEEVLKFSDDVGPLQYVSASDGAKI-IITAGYGEKHLQVWRCDISSKTVN-----------KGPALSMRHSPVAIDC 209 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~~d~~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 209 (340)
+.+++.+..+..|...|.+++|+|++.+ +++++. |+.|++||++....... ........|...+..+
T Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 173 LKSGSCSHILQGHRQEILAVSWSPRYDYILATASA-DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEET-TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred CCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcC-CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 9999999999999999999999999996 667666 99999999953221100 0000001445555555
Q ss_pred ecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 210 KNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 210 ~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.| +|++.+|++++.||.|++||+.+++...
T Consensus 252 --~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 252 --CF-TSDGLHLLTVGTDNRMRLWNSSNGENTL 281 (408)
T ss_dssp --EE-CTTSSEEEEEETTSCEEEEETTTCCBCC
T ss_pred --EE-cCCCCEEEEecCCCeEEEEECCCCccce
Confidence 56 7899999999999999999999866543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-28 Score=217.36 Aligned_cols=220 Identities=11% Similarity=0.133 Sum_probs=168.4
Q ss_pred CccCCCCc-----------eeeeeeCCCCCCC------------CCeEEEEeeccc--cccccccCceEEEEEcCCCcEE
Q 036605 1 IWSTNDGS-----------LLAEWKQPDGEPV------------VSYSCLACGFVG--KKRRKERGTLLLALGTSNGDIL 55 (340)
Q Consensus 1 vwd~~~g~-----------~~~~~~~~~~~~~------------~~v~~l~~sp~~--~~~~~~~~~~~l~~g~~dg~i~ 55 (340)
|||+.+++ +...+. +|. ..|++++|+|++ . +|++|+.||.|+
T Consensus 54 iw~~~~~~~~~~~~~~~~~~~~~~~----~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~---------~l~s~s~d~~i~ 120 (447)
T 3dw8_B 54 IFQQEQENKIQSHSRGEYNVYSTFQ----SHEPEFDYLKSLEIEEKINKIRWLPQKNAA---------QFLLSTNDKTIK 120 (447)
T ss_dssp EEEECC-----CCCCCCEEEEEEEE----CCCCEEEGGGTEEECCCCCEEEECCCCSSS---------EEEEEECSSCEE
T ss_pred EEEecCCCCCCcccccceeEecccc----cccccccccccccccCceEEEEEcCCCCcc---------eEEEeCCCCeEE
Confidence 58877766 466776 677 889999999998 6 899999999999
Q ss_pred EEEccCCeeE---------------------------------------EEecCCCCCCeEEEEEecCCCEEEEEeCCCc
Q 036605 56 AVDVLTGEMK---------------------------------------WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGM 96 (340)
Q Consensus 56 i~d~~~~~~~---------------------------------------~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~ 96 (340)
+||+.++... ..+...|...|.+++|+|+++.|++| .|+.
T Consensus 121 iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~ 199 (447)
T 3dw8_B 121 LWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLR 199 (447)
T ss_dssp EEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSE
T ss_pred EEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCe
Confidence 9998875432 12333499999999999999999998 7999
Q ss_pred EEEEeCCCC-eEEE-------EeecCCCCeeEEEEccCC-CEEEEecCc--EEEEECCCCce----eEEeecCCC-----
Q 036605 97 ASEMKSEMG-EVIR-------EFKASEKPISSSAFLCEE-KIFALASSE--VRILSLENGEE----VLKFSDDVG----- 156 (340)
Q Consensus 97 i~~wd~~~~-~~~~-------~~~~~~~~i~~l~~~~~~-~~l~~~~~~--i~i~d~~~~~~----~~~~~~~~~----- 156 (340)
|++||+.+. ..+. .+..|...|.+++|+|++ .++++++.+ |++||+++++. +..+..|..
T Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 279 (447)
T 3dw8_B 200 INLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRS 279 (447)
T ss_dssp EEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CC
T ss_pred EEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccc
Confidence 999999844 3433 255788999999999998 888886544 99999999876 677887775
Q ss_pred -------CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeee------------e-eecCCCCC
Q 036605 157 -------PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAI------------D-CKNSPNGE 216 (340)
Q Consensus 157 -------~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~ 216 (340)
.|.+++|+|++++|++++. +.|++||++. .++....+. .|..... . ....| +|
T Consensus 280 ~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~-~~~~~~~~~---~~~~~~~~l~~~~~~~~i~~~~~~~~-s~ 352 (447)
T 3dw8_B 280 FFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNM-ENRPVETYQ---VHEYLRSKLCSLYENDCIFDKFECCW-NG 352 (447)
T ss_dssp HHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTC-CSSCSCCEE---SCGGGTTTHHHHHHTSGGGCCCCEEE-CT
T ss_pred cccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCC-Cccccceee---ccccccccccccccccccccceEEEE-CC
Confidence 8999999999999998554 9999999942 133333333 3321110 0 00145 89
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcc
Q 036605 217 DGTVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 217 ~~~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
++.+|++|+.||.|++||+.+++.+
T Consensus 353 ~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 353 SDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp TSSEEEEECSTTEEEEEETTTCCEE
T ss_pred CCCEEEEeccCCEEEEEEcCCCcce
Confidence 9999999999999999999886543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-28 Score=210.79 Aligned_cols=221 Identities=13% Similarity=0.168 Sum_probs=176.8
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeecc---ccccccccCceEEEEEcCCCcEEEEEccCCe-eEEEecCCCCCCe
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFV---GKKRRKERGTLLLALGTSNGDILAVDVLTGE-MKWKSTGRHPGGL 76 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~---~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~h~~~v 76 (340)
|||+.+++...... .+|...|++++|+|+ +. +|++|+.||.|++||+.+++ ....+.+ |.+.|
T Consensus 48 iw~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~---------~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v 114 (357)
T 3i2n_A 48 LYEIQHGDLKLLRE---IEKAKPIKCGTFGATSLQQR---------YLATGDFGGNLHIWNLEAPEMPVYSVKG-HKEII 114 (357)
T ss_dssp EEEECSSSEEEEEE---EEESSCEEEEECTTCCTTTC---------CEEEEETTSCEEEECTTSCSSCSEEECC-CSSCE
T ss_pred EEeCCCCcccceee---ecccCcEEEEEEcCCCCCCc---------eEEEecCCCeEEEEeCCCCCccEEEEEe-cccce
Confidence 68998888765443 257899999999998 57 89999999999999999988 7788887 99999
Q ss_pred EEEEE------ecCCCEEEEEeCCCcEEEEeCCCCe-EEEEeecCCC----CeeEEE----EccCCCEEEEecC--cEEE
Q 036605 77 AGLAF------AKKGRSLHVVGTNGMASEMKSEMGE-VIREFKASEK----PISSSA----FLCEEKIFALASS--EVRI 139 (340)
Q Consensus 77 ~~v~~------~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~----~i~~l~----~~~~~~~l~~~~~--~i~i 139 (340)
.+++| +|+++.|++++.||.|++||+.+++ .+..+..+.. .+.+++ |+|++.++++++. .|++
T Consensus 115 ~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i 194 (357)
T 3i2n_A 115 NAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKL 194 (357)
T ss_dssp EEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEE
T ss_pred EEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEE
Confidence 99955 6789999999999999999999887 6667765544 788888 7889999988654 4999
Q ss_pred EECCCCceeEEeecCCCCeEEEEECC---CCCEEEEEEcCCCeEEEEEccCCCCCccCCce--eeecCCCeeeeeecCCC
Q 036605 140 LSLENGEEVLKFSDDVGPLQYVSASD---GAKIIITAGYGEKHLQVWRCDISSKTVNKGPA--LSMRHSPVAIDCKNSPN 214 (340)
Q Consensus 140 ~d~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 214 (340)
||+++++.. ....|...|.+++|+| ++.++++++. |+.|++||++ .+.....+. ....|...+..+ .|
T Consensus 195 ~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~v~~~--~~- 267 (357)
T 3i2n_A 195 FDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATSL-EGKFHVFDMR--TQHPTKGFASVSEKAHKSTVWQV--RH- 267 (357)
T ss_dssp EETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEES-TTEEEEEEEE--EEETTTEEEEEEEECCSSCEEEE--EE-
T ss_pred EECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEECC-CCeEEEEeCc--CCCcccceeeeccCCCcCCEEEE--EE-
Confidence 999998764 4466889999999999 8999999887 9999999994 333222221 112455566655 56
Q ss_pred CCCCC-EEEEEeCCCcEEEEECCCCCcc
Q 036605 215 GEDGT-VILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 215 ~~~~~-~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
+|++. ++++++.||.|++||+......
T Consensus 268 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 268 LPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp ETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 78887 8999999999999999875443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=213.14 Aligned_cols=221 Identities=11% Similarity=0.071 Sum_probs=172.6
Q ss_pred CccCCCCc-eeeeeeCCCCCCCCCeEEEE------eeccccccccccCceEEEEEcCCCcEEEEEccCCe-eEEEecCCC
Q 036605 1 IWSTNDGS-LLAEWKQPDGEPVVSYSCLA------CGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-MKWKSTGRH 72 (340)
Q Consensus 1 vwd~~~g~-~~~~~~~~~~~~~~~v~~l~------~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~h 72 (340)
|||+.+++ ....+. .|...|.+++ |+|+++ +|++|+.||.|++||+.+++ ....+.. |
T Consensus 94 iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~s~~~~---------~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~ 159 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVK----GHKEIINAIDGIGGLGIGEGAP---------EIVTGSRDGTVKVWDPRQKDDPVANMEP-V 159 (357)
T ss_dssp EECTTSCSSCSEEEC----CCSSCEEEEEEESGGGCC-CCC---------EEEEEETTSCEEEECTTSCSSCSEEECC-C
T ss_pred EEeCCCCCccEEEEE----ecccceEEEeeccccccCCCcc---------EEEEEeCCCeEEEEeCCCCCCcceeccc-c
Confidence 68998887 777777 8999999995 567888 89999999999999999886 5666654 4
Q ss_pred CC----CeEEEE----EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEcc---CCCEEEEecC--cEEE
Q 036605 73 PG----GLAGLA----FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLC---EEKIFALASS--EVRI 139 (340)
Q Consensus 73 ~~----~v~~v~----~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~---~~~~l~~~~~--~i~i 139 (340)
.+ .|.+++ |+|+++.|++++.||.|++||+++++.... ..+...+.+++|+| ++.++++++. .|++
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 43 899998 678999999999999999999999987544 56788999999999 8999988654 4999
Q ss_pred EECCCCceeEEee-----cCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEEccCCCCCcc--------------CCceee
Q 036605 140 LSLENGEEVLKFS-----DDVGPLQYVSASDGAK-IIITAGYGEKHLQVWRCDISSKTVN--------------KGPALS 199 (340)
Q Consensus 140 ~d~~~~~~~~~~~-----~~~~~v~~~~~s~~~~-~l~s~~~~d~~i~iwd~~~~~~~~~--------------~~~~~~ 199 (340)
||+++++.+..+. +|...|.+++|+|++. +|++++. |+.|++||++....... ..+...
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG-AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET-TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC-CCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 9998876655444 8999999999999998 6777776 99999999953221100 011112
Q ss_pred ecCCCeeeeeecCCCCCCCCEEE-EEeCCCcEEEEECCCCCc
Q 036605 200 MRHSPVAIDCKNSPNGEDGTVIL-AVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~l~-~~s~dg~i~vwd~~~~~~ 240 (340)
..|...+..+ .| ++++.+|+ +++.||.|++||+.+.+.
T Consensus 318 ~~~~~~v~~~--~~-s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 318 TLSTQPISSL--DW-SPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp ECCSSCEEEE--EE-CSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccCCCCeeEE--EE-cCCCCeEEEEecCCCcEEEEECCCccc
Confidence 2455556665 66 78888888 899999999999987543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-28 Score=214.63 Aligned_cols=207 Identities=11% Similarity=0.096 Sum_probs=162.1
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-----------eEEEecCCCC------------CC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-----------MKWKSTGRHP------------GG 75 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-----------~~~~~~~~h~------------~~ 75 (340)
.+...|+|++|+|+++ +||+|+.||.|++||+.+++ ....+.+ |. +.
T Consensus 26 ~~~~~V~~v~~s~~g~---------~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE---------LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CGGGSEEEEEECSSSS---------EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCC
T ss_pred cccCcEEEEEECCCCC---------EEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-ccccccccccccccCc
Confidence 4578999999999999 99999999999999999876 4667787 98 88
Q ss_pred eEEEEEecCC--CEEEEEeCCCcEEEEeCCCCeEE---------------------------------------EE-eec
Q 036605 76 LAGLAFAKKG--RSLHVVGTNGMASEMKSEMGEVI---------------------------------------RE-FKA 113 (340)
Q Consensus 76 v~~v~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~---------------------------------------~~-~~~ 113 (340)
|++++|+|++ ..|++++.|+.|++||+.++... .. ..+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 79999999999999998765432 12 357
Q ss_pred CCCCeeEEEEccCCCEEEEec-CcEEEEECCCC-ceeE-------EeecCCCCeEEEEECCCC-CEEEEEEcCCCeEEEE
Q 036605 114 SEKPISSSAFLCEEKIFALAS-SEVRILSLENG-EEVL-------KFSDDVGPLQYVSASDGA-KIIITAGYGEKHLQVW 183 (340)
Q Consensus 114 ~~~~i~~l~~~~~~~~l~~~~-~~i~i~d~~~~-~~~~-------~~~~~~~~v~~~~~s~~~-~~l~s~~~~d~~i~iw 183 (340)
|...|.+++|+|++++|++++ +.|++||+.+. +.+. .+..|...|.+++|+|++ .+|++++. |+.|++|
T Consensus 176 h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iw 254 (447)
T 3dw8_B 176 HTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS-KGTIRLC 254 (447)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET-TSCEEEE
T ss_pred CCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC-CCeEEEE
Confidence 889999999999999998863 33999999844 3333 256899999999999998 89999887 9999999
Q ss_pred EccCCCCCccCC-ceeeecCCC------------eeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC-CCccC
Q 036605 184 RCDISSKTVNKG-PALSMRHSP------------VAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT-VSQDE 242 (340)
Q Consensus 184 d~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~-~~~~~ 242 (340)
|++ .+..... ......+.. .+..+ .| +|++.+|++++. |.|++||+.. ++.+.
T Consensus 255 d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-s~~g~~l~~~~~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 255 DMR--ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDV--KF-SHSGRYMMTRDY-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp ETT--TCSSSCTTCEEECCC-----CCHHHHHTTCEEEE--EE-CTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred ECc--CCccccceeeEeccCCCccccccccccCceEEEE--EE-CCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence 994 3332111 111112322 44444 55 889999999999 9999999987 55444
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=213.69 Aligned_cols=225 Identities=8% Similarity=0.042 Sum_probs=175.0
Q ss_pred CccCCCCceeeeeeCC---------CCCCCCCeEEEEeec-cccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC
Q 036605 1 IWSTNDGSLLAEWKQP---------DGEPVVSYSCLACGF-VGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~---------~~~~~~~v~~l~~sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 70 (340)
|||+.+++....+... ..+|...|++++|+| ++. +|++|+.||.|++||+.+++....+.
T Consensus 70 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------~l~s~~~d~~i~iwd~~~~~~~~~~~- 139 (408)
T 4a11_B 70 LYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG---------MFTSSSFDKTLKVWDTNTLQTADVFN- 139 (408)
T ss_dssp EEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT---------CEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred EEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc---------EEEEEeCCCeEEEeeCCCCccceecc-
Confidence 5888777655444311 014889999999999 567 89999999999999999998887776
Q ss_pred CCCCCeEEEEEecC---CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC-EEEEecC--cEEEEECCC
Q 036605 71 RHPGGLAGLAFAKK---GRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEK-IFALASS--EVRILSLEN 144 (340)
Q Consensus 71 ~h~~~v~~v~~~~~---~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~--~i~i~d~~~ 144 (340)
+...+.++.|++. +..+++++.|+.|++||+.+++.+..+..|...|.+++|+|++. ++++++. .|++||+++
T Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 140 -FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp -CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred -CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 7788999999984 44999999999999999999999999999999999999999998 4666544 499999987
Q ss_pred Cc-eeEEe---------------ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCC-------------
Q 036605 145 GE-EVLKF---------------SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKG------------- 195 (340)
Q Consensus 145 ~~-~~~~~---------------~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~------------- 195 (340)
+. .+..+ ..|...|.+++|+|++.+|++++. |+.|++||++ .++....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~ 295 (408)
T 4a11_B 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT-DNRMRLWNSS--NGENTLVNYGKVCNNSKKGL 295 (408)
T ss_dssp SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET-TSCEEEEETT--TCCBCCCCCCCCCCCCSSCC
T ss_pred CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC-CCeEEEEECC--CCccceeccccccccccccc
Confidence 65 23333 568899999999999999999888 9999999995 2221110
Q ss_pred ------------------------------ceee-ecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 196 ------------------------------PALS-MRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 196 ------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.... ..|...+..+ .| ++++.+|++++.||.|++|++.+.+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~--~~-s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 296 KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCC--VF-QSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp CCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEE--EE-ETTTTEEEEEETTSCEEEEEECC-----
T ss_pred eeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEE--EE-cCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 0000 1244444444 55 7999999999999999999999887665
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=218.92 Aligned_cols=220 Identities=11% Similarity=0.134 Sum_probs=171.4
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeec-cccccccccCceEEEEEcCCCcEEEEEccC---Ce---eEEEecCCCCC
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGF-VGKKRRKERGTLLLALGTSNGDILAVDVLT---GE---MKWKSTGRHPG 74 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~---~~---~~~~~~~~h~~ 74 (340)
|+ .+|+++..+. .+|...|++++|+| +++ +|++|+.||+|++||+.+ +. ....+ . |.+
T Consensus 48 w~-~~g~~~~~~~---~~h~~~V~~~~~s~~~~~---------~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~-h~~ 112 (437)
T 3gre_A 48 GN-LRGKLIATLM---ENEPNSITSSAVSPGETP---------YLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-D-CSS 112 (437)
T ss_dssp GG-CCCCEEEEEC---TTTTSCEEEEEEECSSSC---------EEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-E-CSS
T ss_pred cc-ccceEEeeec---cCCCCceEEEEECCCCCC---------EEEEecCCceEEEeECcccccCcccceeeec-c-CCC
Confidence 66 4577777773 28999999999999 999 999999999999999877 43 12222 3 899
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeCC---CCeEEEEeec------------CCCCeeEEE--EccCCCEEEEecCc-
Q 036605 75 GLAGLAFAKKGRSLHVVGTNGMASEMKSE---MGEVIREFKA------------SEKPISSSA--FLCEEKIFALASSE- 136 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~dg~i~~wd~~---~~~~~~~~~~------------~~~~i~~l~--~~~~~~~l~~~~~~- 136 (340)
.|++++|+|++..|++++.||.|++||+. +++....+.. +...+.++. +++++.++++++.+
T Consensus 113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 192 (437)
T 3gre_A 113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS 192 (437)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS
T ss_pred CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC
Confidence 99999999999999999999999999994 5544433221 345566666 55789899886654
Q ss_pred -EEEEECCCCceeEEeec--CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeec--
Q 036605 137 -VRILSLENGEEVLKFSD--DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKN-- 211 (340)
Q Consensus 137 -i~i~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 211 (340)
|++||+++++.+..+.. |...|.+++|+|++.+|++++. |+.|++||++ .++.... +...+...+..+..
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~--~~~~~~~--~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-RGIIDIWDIR--FNVLIRS--WSFGDHAPITHVEVCQ 267 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET-TSCEEEEETT--TTEEEEE--EBCTTCEEEEEEEECT
T ss_pred eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC-CCeEEEEEcC--CccEEEE--EecCCCCceEEEEecc
Confidence 99999999999999987 8899999999999999999888 9999999994 3332221 12244444443311
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 212 SPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 212 ~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.+ ++++.+|++++.||.|++||+.+++.+.
T Consensus 268 ~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 297 (437)
T 3gre_A 268 FY-GKNSVIVVGGSSKTFLTIWNFVKGHCQY 297 (437)
T ss_dssp TT-CTTEEEEEEESTTEEEEEEETTTTEEEE
T ss_pred cc-CCCccEEEEEcCCCcEEEEEcCCCcEEE
Confidence 33 6889999999999999999998766444
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=217.85 Aligned_cols=214 Identities=15% Similarity=0.113 Sum_probs=179.1
Q ss_pred CccCCCCceeeeeeCCCCCCCCC---------------eEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVS---------------YSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK 65 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~---------------v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~ 65 (340)
+||+.+++....+. .+... +.+++|+|++. +++++.+|.|++||+.+++..
T Consensus 175 iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~g~i~~~d~~~~~~~ 240 (425)
T 1r5m_A 175 LWNVISGTVMQHFE----LKETGGSSINAENHSGDGSLGVDVEWVDDDK----------FVIPGPKGAIFVYQITEKTPT 240 (425)
T ss_dssp EEETTTTEEEEEEC----CC---------------CCCBSCCEEEETTE----------EEEECGGGCEEEEETTCSSCS
T ss_pred EEECCCCcEEEEee----ccccCccceeeccccCCcceeeEEEEcCCCE----------EEEEcCCCeEEEEEcCCCcee
Confidence 58999998888776 44444 99999999766 889999999999999999888
Q ss_pred EEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECC
Q 036605 66 WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLE 143 (340)
Q Consensus 66 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~ 143 (340)
..+.. |...|.+++|+|++++|++++.|+.|++||+.+++.+..+..|...+.+++|+|++ ++++++. .|++||+.
T Consensus 241 ~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 241 GKLIG-HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp EEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETT
T ss_pred eeecc-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECC
Confidence 88887 99999999999999999999999999999999999888898899999999999999 7766544 49999999
Q ss_pred CCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCc-----------------cCCceeeecCCC--
Q 036605 144 NGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTV-----------------NKGPALSMRHSP-- 204 (340)
Q Consensus 144 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~-----------------~~~~~~~~~~~~-- 204 (340)
+++.+..+..|...+.+++|+|++.+|++++. |+.|++||++ .... .........+..
T Consensus 319 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (425)
T 1r5m_A 319 QNTLLALSIVDGVPIFAGRISQDGQKYAVAFM-DGQVNVYDLK--KLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND 395 (425)
T ss_dssp TTEEEEEEECTTCCEEEEEECTTSSEEEEEET-TSCEEEEECH--HHHC--------------CEECCEEEEECCTTCCC
T ss_pred CCcEeEecccCCccEEEEEEcCCCCEEEEEEC-CCeEEEEECC--CCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence 99999999999999999999999999999887 9999999994 2220 001111113432
Q ss_pred eeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 205 VAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.+..+ .| ++++.+|++++.||.|++|++.
T Consensus 396 ~v~~~--~~-s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 396 YIFDL--SW-NCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CEEEE--EE-CTTSSEEEEEESSSCCEEEECC
T ss_pred ceEEE--Ec-cCCCceEEEEecCceEEEEeec
Confidence 55555 56 8999999999999999999985
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=231.13 Aligned_cols=221 Identities=14% Similarity=0.138 Sum_probs=178.0
Q ss_pred CccCC--CCceeeeeeCCCCCCCCCeEEEEeecc--ccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCC
Q 036605 1 IWSTN--DGSLLAEWKQPDGEPVVSYSCLACGFV--GKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPG 74 (340)
Q Consensus 1 vwd~~--~g~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~ 74 (340)
|||+. ++.....+. +|...|++++|+|+ +. +|++|+.||.|++||+.+++ ....+.. |..
T Consensus 35 vwd~~~~~~~~~~~l~----~h~~~V~~l~~s~~~~~~---------~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-h~~ 100 (753)
T 3jro_A 35 IFEVEGETHKLIDTLT----GHEGPVWRVDWAHPKFGT---------ILASCSYDGKVLIWKEENGRWSQIAVHAV-HSA 100 (753)
T ss_dssp EEEEETTEEEEEEEEC----CCSSCEEEEEECCTTSCS---------EEEEEETTSCEEEEEEETTEEEEEEEECC-CSS
T ss_pred EEecCCCCCccceecc----CCcCceEEEEecCCCCCC---------EEEEEeCCCeEEEEECCCCcccccccccC-CCC
Confidence 58877 445556666 79999999999988 78 89999999999999999987 5666776 999
Q ss_pred CeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCe--EEEEeecCCCCeeEEEEcc-------------CCCEEEEecCc-
Q 036605 75 GLAGLAFAKK--GRSLHVVGTNGMASEMKSEMGE--VIREFKASEKPISSSAFLC-------------EEKIFALASSE- 136 (340)
Q Consensus 75 ~v~~v~~~~~--~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~l~~~~-------------~~~~l~~~~~~- 136 (340)
.|++++|+|+ +..+++++.||.|++||+.++. ....+..|...|.+++|+| ++.++++++.+
T Consensus 101 ~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg 180 (753)
T 3jro_A 101 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180 (753)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTS
T ss_pred CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC
Confidence 9999999999 9999999999999999998873 3445678899999999999 58888886544
Q ss_pred -EEEEECCCC----ceeEEeecCCCCeEEEEECCC---CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeee
Q 036605 137 -VRILSLENG----EEVLKFSDDVGPLQYVSASDG---AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAID 208 (340)
Q Consensus 137 -i~i~d~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 208 (340)
|++||++++ .....+.+|...|.+++|+|+ +.++++++. |+.|++||++...............+...+..
T Consensus 181 ~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 259 (753)
T 3jro_A 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259 (753)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES-SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCC
T ss_pred eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec-CCEEEEecCCCCCCcceeEEeccCCCCCceEE
Confidence 999999877 445677889999999999999 889999887 99999999953222111111111134444444
Q ss_pred eecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 209 CKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 209 ~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
+ .| +|++.++++++.||.|++|++....
T Consensus 260 l--~~-spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 260 A--SW-SLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp E--EE-CTTTCCEEEECSSSCEECCBCCSSS
T ss_pred E--EE-cCCCCEEEEEcCCCEEEEEecCCCC
Confidence 4 55 8999999999999999999998643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=214.72 Aligned_cols=214 Identities=15% Similarity=0.124 Sum_probs=169.3
Q ss_pred CceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee-------EEEecCCCCCCeEEE
Q 036605 7 GSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM-------KWKSTGRHPGGLAGL 79 (340)
Q Consensus 7 g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-------~~~~~~~h~~~v~~v 79 (340)
+.....+. +|...|++++|+|++. .+|++|+.||.|++||+..+.. ...+.. |...|.++
T Consensus 171 ~~~~~~~~----~h~~~v~~l~~~~~~~--------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v 237 (430)
T 2xyi_A 171 CQPDLRLR----GHQKEGYGLSWNPNLN--------GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG-HTAVVEDV 237 (430)
T ss_dssp CCCSEEEE----CCSSCCCCEEECTTST--------TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC-CSSCEEEE
T ss_pred CCCcEEec----CCCCCeEEEEeCCCCC--------CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC-CCCCEeee
Confidence 45556666 7899999999999873 1899999999999999987421 345556 99999999
Q ss_pred EEec-CCCEEEEEeCCCcEEEEeCCCC---eEEEEeecCCCCeeEEEEccCCC-EEEEec--CcEEEEECCC-CceeEEe
Q 036605 80 AFAK-KGRSLHVVGTNGMASEMKSEMG---EVIREFKASEKPISSSAFLCEEK-IFALAS--SEVRILSLEN-GEEVLKF 151 (340)
Q Consensus 80 ~~~~-~~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~--~~i~i~d~~~-~~~~~~~ 151 (340)
+|+| ++..|++++.||.|++||++++ ..+..+..|...|.+++|+|++. ++++++ +.|++||+++ +..+..+
T Consensus 238 ~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~ 317 (430)
T 2xyi_A 238 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe
Confidence 9999 6789999999999999999987 56677888999999999999987 566654 4499999998 5567888
Q ss_pred ecCCCCeEEEEECCCCCE-EEEEEcCCCeEEEEEccCCCCCcc--------CCcee-eecCCCeeeeeecCCCCCCCC-E
Q 036605 152 SDDVGPLQYVSASDGAKI-IITAGYGEKHLQVWRCDISSKTVN--------KGPAL-SMRHSPVAIDCKNSPNGEDGT-V 220 (340)
Q Consensus 152 ~~~~~~v~~~~~s~~~~~-l~s~~~~d~~i~iwd~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~-~ 220 (340)
..|...|.+++|+|++.+ |++++. |+.|+|||++....... ..... ...|...+..+ .| +|++. +
T Consensus 318 ~~h~~~v~~i~~sp~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~-~p~~~~~ 393 (430)
T 2xyi_A 318 ESHKDEIFQVQWSPHNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF--SW-NPNEPWI 393 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEET-TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEE--EE-CSSSTTE
T ss_pred ecCCCCEEEEEECCCCCCEEEEEeC-CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEE--EE-CCCCCCE
Confidence 999999999999999965 666565 99999999953221110 01111 12455556666 66 78887 8
Q ss_pred EEEEeCCCcEEEEECCC
Q 036605 221 ILAVAESGVAYSWDLKT 237 (340)
Q Consensus 221 l~~~s~dg~i~vwd~~~ 237 (340)
+++++.||.|++|++..
T Consensus 394 l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 394 ICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEEETTSEEEEEEECH
T ss_pred EEEEECCCCEEEeEccc
Confidence 99999999999999876
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-29 Score=223.74 Aligned_cols=155 Identities=8% Similarity=0.057 Sum_probs=135.1
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-eEEEecCCCCCCeEEE--EEecCC-CEEEEEeCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-MKWKSTGRHPGGLAGL--AFAKKG-RSLHVVGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~h~~~v~~v--~~~~~~-~~l~s~~~d 94 (340)
+|...|+|++|+|+ . +|++|+.||+|++||+.++. ....+.+ |.+.|++| +|+|++ .+|++++.|
T Consensus 264 ~h~~~v~sv~~s~~-~---------~lasgs~DgtV~lWD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~laS~S~D 332 (524)
T 2j04_B 264 LADSLITTFDFLSP-T---------TVVCGFKNGFVAEFDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVSTVAVD 332 (524)
T ss_dssp CTTTCEEEEEESSS-S---------EEEEEETTSEEEEEETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEEEEETT
T ss_pred cCCCCEEEEEecCC-C---------eEEEEeCCCEEEEEECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEEEeccC
Confidence 68899999999985 4 59999999999999998764 3445677 99999999 578887 899999999
Q ss_pred CcEEEEeCCCCeEEEEeecCCC--CeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEE
Q 036605 95 GMASEMKSEMGEVIREFKASEK--PISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKII 170 (340)
Q Consensus 95 g~i~~wd~~~~~~~~~~~~~~~--~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 170 (340)
++|++||+++++....+.+|.. .+.+++|+|++..+++++.+ |++||++++..+..+.+|...|.+++|+|++++|
T Consensus 333 ~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l 412 (524)
T 2j04_B 333 GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMV 412 (524)
T ss_dssp SEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBC
T ss_pred CeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeE
Confidence 9999999998876666655543 47899999999998886555 9999999998888899999999999999999999
Q ss_pred EEEEcCCCeEEEEEc
Q 036605 171 ITAGYGEKHLQVWRC 185 (340)
Q Consensus 171 ~s~~~~d~~i~iwd~ 185 (340)
++++. |++|++||+
T Consensus 413 ~Sgs~-Dgtv~lwd~ 426 (524)
T 2j04_B 413 LAGSA-DGSLIITNA 426 (524)
T ss_dssp EEEET-TTEEECCBS
T ss_pred EEEEC-CCEEEEEec
Confidence 99888 999999997
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=216.72 Aligned_cols=200 Identities=8% Similarity=0.021 Sum_probs=163.0
Q ss_pred CCCCeEEEEeeccccccccccCceEE-EEEcCCCcEEEEEcc--CCeeEEEecC-CCCCCeEEEEEecCCCEEEEEeCCC
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLL-ALGTSNGDILAVDVL--TGEMKWKSTG-RHPGGLAGLAFAKKGRSLHVVGTNG 95 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l-~~g~~dg~i~i~d~~--~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~dg 95 (340)
|...|++++|+|+++ +| ++|+.||.|++||+. +++.+..+.. .|...|.+++|+|++++|++++.+|
T Consensus 101 ~~~~v~~~~~s~d~~---------~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g 171 (450)
T 2vdu_B 101 IYSYIRNLRLTSDES---------RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFG 171 (450)
T ss_dssp CCCCEEEEEECTTSS---------EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCceEEEEEcCCCC---------EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCC
Confidence 444799999999998 75 899999999999999 8877777752 2778999999999999999999999
Q ss_pred cEEEEeCCCCeEEE----EeecCCCCeeEEEEccC---CCEEEEecCc--EEEEECCCCceeEE-eecCCCCeEEEEECC
Q 036605 96 MASEMKSEMGEVIR----EFKASEKPISSSAFLCE---EKIFALASSE--VRILSLENGEEVLK-FSDDVGPLQYVSASD 165 (340)
Q Consensus 96 ~i~~wd~~~~~~~~----~~~~~~~~i~~l~~~~~---~~~l~~~~~~--i~i~d~~~~~~~~~-~~~~~~~v~~~~~s~ 165 (340)
.|++|++.++.... .+.+|...|.+++|+|+ +++|++++.+ |++||+.+++.+.. +.+|...|.+++|+
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s- 250 (450)
T 2vdu_B 172 DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG- 250 (450)
T ss_dssp EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-
T ss_pred cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-
Confidence 99999998877544 67789999999999999 9899886655 99999999988877 46899999999999
Q ss_pred CCCEEEEEEcCCCeEEEEEccCCCCCccCCceeee----------------------cCCCeeeeeecCCCCCCCCEEEE
Q 036605 166 GAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSM----------------------RHSPVAIDCKNSPNGEDGTVILA 223 (340)
Q Consensus 166 ~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~ 223 (340)
++.+|++++. |+.|++||++ +++....+.... .....+..+ .+ .+++.+|++
T Consensus 251 d~~~l~s~~~-d~~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~-~~~~~~l~~ 324 (450)
T 2vdu_B 251 KDYLLLSAGG-DDKIFAWDWK--TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI--IK-SKNLPFVAF 324 (450)
T ss_dssp STTEEEEEES-SSEEEEEETT--TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE--EE-CSSSSEEEE
T ss_pred CCCEEEEEeC-CCeEEEEECC--CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE--EE-eCCCCEEEE
Confidence 9999999887 9999999994 443322221000 011122233 44 688999999
Q ss_pred Ee-CCCcEEEEEC
Q 036605 224 VA-ESGVAYSWDL 235 (340)
Q Consensus 224 ~s-~dg~i~vwd~ 235 (340)
++ .|+.|++|++
T Consensus 325 ~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 325 FVEATKCIIILEM 337 (450)
T ss_dssp EETTCSEEEEEEE
T ss_pred EECCCCeEEEEEe
Confidence 98 8999999999
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=237.25 Aligned_cols=157 Identities=11% Similarity=0.186 Sum_probs=147.9
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
+|...|+|++|+|+++ +|++|+.||+|++||+.+++.+..+.+ |.+.|.+++|+|++++|++++.|+.|+
T Consensus 613 ~h~~~v~~~~~s~~~~---------~l~s~~~d~~i~vw~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQ---------RIASCGADKTLQVFKAETGEKLLDIKA-HEDEVLCCAFSSDDSYIATCSADKKVK 682 (1249)
T ss_dssp CCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cccccEEEEEECCCCC---------EEEEEeCCCeEEEEECCCCCEEEEecc-CCCCEEEEEEecCCCEEEEEeCCCeEE
Confidence 7899999999999999 999999999999999999999999998 999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEcc--CCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEE
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLC--EEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAG 174 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 174 (340)
+||+.+++.+..+..|...|.+++|+| ++.++++++.+ |++||+.+++.+..+.+|...|.+++|+|++.++++++
T Consensus 683 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred EEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEE
Confidence 999999999999999999999999999 45577776544 99999999999999999999999999999999999988
Q ss_pred cCCCeEEEEEcc
Q 036605 175 YGEKHLQVWRCD 186 (340)
Q Consensus 175 ~~d~~i~iwd~~ 186 (340)
. |+.|++||++
T Consensus 763 ~-dg~v~vwd~~ 773 (1249)
T 3sfz_A 763 A-DGTLRLWDVR 773 (1249)
T ss_dssp S-SSEEEEEEGG
T ss_pred C-CCeEEEEeCC
Confidence 8 9999999984
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=202.36 Aligned_cols=219 Identities=15% Similarity=0.161 Sum_probs=174.6
Q ss_pred CccCCCCc-----eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCC
Q 036605 1 IWSTNDGS-----LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGG 75 (340)
Q Consensus 1 vwd~~~g~-----~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~ 75 (340)
|||+.+++ ....+. +|...|++++|+|+++ +|++|+.||.|++|+...+........ +...
T Consensus 65 vWd~~~~~~~~~~~~~~l~----~h~~~V~~~~~s~dg~---------~l~s~~~d~~i~~~~~~~~~~~~~~~~-~~~~ 130 (340)
T 4aow_A 65 MWKLTRDETNYGIPQRALR----GHSHFVSDVVISSDGQ---------FALSGSWDGTLRLWDLTTGTTTRRFVG-HTKD 130 (340)
T ss_dssp EEEECCSSSCSEEEEEEEC----CCSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTTEEEEEEEC-CSSC
T ss_pred EEECCCCCcccceeeEEEe----CCCCCEEEEEECCCCC---------EEEEEcccccceEEeecccceeeeecC-CCCc
Confidence 58876554 234555 7999999999999999 999999999999999999987777776 8889
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEE-EeecCCCCeeEEEEccCC--CEEEEecC--cEEEEECCCCceeEE
Q 036605 76 LAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIR-EFKASEKPISSSAFLCEE--KIFALASS--EVRILSLENGEEVLK 150 (340)
Q Consensus 76 v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~l~~~~~~--~~l~~~~~--~i~i~d~~~~~~~~~ 150 (340)
+..+.+++++..|++++.|+.+++||+....... ....|...+..++|++++ .++++++. .|++||+.+++.+..
T Consensus 131 ~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~ 210 (340)
T 4aow_A 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 210 (340)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred eeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE
Confidence 9999999999999999999999999998765443 356788899999999875 45566544 499999999999999
Q ss_pred eecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCc----------------ee----------------
Q 036605 151 FSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGP----------------AL---------------- 198 (340)
Q Consensus 151 ~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~----------------~~---------------- 198 (340)
+.+|...|.+++|+|++++|++++. |+.|++||++ ..+....+ .+
T Consensus 211 ~~~h~~~v~~~~~s~~~~~l~s~s~-Dg~i~iwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~ 287 (340)
T 4aow_A 211 HIGHTGYLNTVTVSPDGSLCASGGK-DGQAMLWDLN--EGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGK 287 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEET-TCEEEEEETT--TTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEEec--cCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCC
Confidence 9999999999999999999999888 9999999984 22111000 00
Q ss_pred --------------eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 199 --------------SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 199 --------------~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
...|...+..+ .| +|++.+|++|+.||.|+|||+.++.
T Consensus 288 ~~~~~~~~~~~~~~~~~h~~~v~~l--~~-s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 288 IIVDELKQEVISTSSKAEPPQCTSL--AW-SADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEECCC-------CCCCCEEEE--EE-CTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eEEEeccccceeeeccCCCCCEEEE--EE-CCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 00122333333 45 8999999999999999999998875
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=217.37 Aligned_cols=223 Identities=12% Similarity=0.026 Sum_probs=164.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeec-cccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-CCCCCeEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGF-VGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-RHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~h~~~v~~ 78 (340)
|||+.+++....+... +|...|++|+|+| ++. +|++|+.||+|++||++++........ .+...+.+
T Consensus 146 lWd~~~~~~~~~~~~~--gH~~~V~~l~f~p~~~~---------~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 214 (435)
T 4e54_B 146 LWNFGIKDKPTFIKGI--GAGGSITGLKFNPLNTN---------QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCS 214 (435)
T ss_dssp EECSSCCSCCEEECCC--SSSCCCCEEEECSSCTT---------EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCC
T ss_pred EEECCCCCceeEEEcc--CCCCCEEEEEEeCCCCC---------EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEE
Confidence 6998887655444433 7999999999998 467 899999999999999987754333322 24456789
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC-EEEEec--CcEEEEECCCCceeEE---ee
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEK-IFALAS--SEVRILSLENGEEVLK---FS 152 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~--~~i~i~d~~~~~~~~~---~~ 152 (340)
++|+|++.+|++|+.||.|++||++. +.+..+.+|...|.+++|+|++. ++++++ +.|++||+++.+.... ..
T Consensus 215 ~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 215 LDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp EEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred EEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 99999999999999999999999864 55677889999999999999986 566654 4499999988765433 36
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCC----CeeeeeecCCCCCCCCEEEEEe---
Q 036605 153 DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHS----PVAIDCKNSPNGEDGTVILAVA--- 225 (340)
Q Consensus 153 ~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~s--- 225 (340)
+|...|.+++|+|++.+|++++. |+.|+|||++ .+....... .|. .....+.+.+ ++++..+++++
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~-D~~i~iwd~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d 366 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQ-KSEIRVYSAS--QWDCPLGLI---PHPHRHFQHLTPIKAAW-HPRYNLIVVGRYPD 366 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEES-SSCEEEEESS--SSSSEEEEC---CCCCCCCSSSCCCBCEE-CSSSSCEEEECCCC
T ss_pred eccccccceeECCCCCeeEEEcC-CCEEEEEECC--CCccceEEe---cccccccccceeEEEEE-cCCCCEEEEEEcCC
Confidence 78999999999999999999888 9999999984 332211111 111 1111111123 44555555443
Q ss_pred ---------CCCcEEEEECCCCCccC
Q 036605 226 ---------ESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 226 ---------~dg~i~vwd~~~~~~~~ 242 (340)
.++.|++||..+++.+.
T Consensus 367 ~~~~~~~~~~~~~i~iwd~~~g~~~~ 392 (435)
T 4e54_B 367 PNFKSCTPYELRTIDVFDGNSGKMMC 392 (435)
T ss_dssp TTSCCSSTTCCCCEEEECSSSCCEEE
T ss_pred CCeEEEEecCCCEEEEEECCCCcEEE
Confidence 34579999998876654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-27 Score=203.47 Aligned_cols=206 Identities=12% Similarity=0.139 Sum_probs=158.2
Q ss_pred CCCCCeEEEEeecc---ccccccccCceEEEEEcCCCcEEEEEccC-CeeE-EEecCCCCCCeEEEEEecCCCEEEEEeC
Q 036605 19 EPVVSYSCLACGFV---GKKRRKERGTLLLALGTSNGDILAVDVLT-GEMK-WKSTGRHPGGLAGLAFAKKGRSLHVVGT 93 (340)
Q Consensus 19 ~~~~~v~~l~~sp~---~~~~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~ 93 (340)
+|...|+|++|+|+ ++ +|++|+.||.|++||+.+ +... ..+.+ |.+.|++++|+|++++|++++.
T Consensus 37 ~h~~~v~~~~~~~~~~~g~---------~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGN---------FLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CCSSCEEEEEECCTTSSSE---------EEEEEETTSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCceEEEEEcCCCCCce---------EEEEECCCCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCCEEEEEcC
Confidence 89999999999999 58 899999999999999997 5444 56666 9999999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCCeeEEEE--ccCCCEEEEecC--cEEEEECCCCceeEEeecCC--------------
Q 036605 94 NGMASEMKSEMGEVIREFKASEKPISSSAF--LCEEKIFALASS--EVRILSLENGEEVLKFSDDV-------------- 155 (340)
Q Consensus 94 dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~--~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~~-------------- 155 (340)
||.|++||+.+++.+. +..|...|.+++| +|++.++++++. .|++||+++++.+..+..+.
T Consensus 107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVV 185 (368)
T ss_dssp TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEE
T ss_pred CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEE
Confidence 9999999999998765 5668999999999 899998888654 49999999887776665432
Q ss_pred ---------------------------CCeEEEEECCCCCE----EEEEEcCCCeEEEEEccCCCC-CccCCceeeecCC
Q 036605 156 ---------------------------GPLQYVSASDGAKI----IITAGYGEKHLQVWRCDISSK-TVNKGPALSMRHS 203 (340)
Q Consensus 156 ---------------------------~~v~~~~~s~~~~~----l~s~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~ 203 (340)
..+..+.+.++... +++++. |+.|++|+++.... .....+. .|.
T Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~i~i~~~~~~~~~~~~~~~~---~~~ 261 (368)
T 3mmy_A 186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI-EGRVAIHYINPPNPAKDNFTFK---CHR 261 (368)
T ss_dssp EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET-TSEEEEEESSCSCHHHHSEEEE---CSE
T ss_pred EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC-CCcEEEEecCCCCccccceeee---eee
Confidence 22334444333332 777666 99999999842211 1111111 222
Q ss_pred C------------eeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 204 P------------VAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 204 ~------------~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
. .+..+ .| +|++.+|++++.||.|++||+.+++.+.
T Consensus 262 ~~~~~~~~~~~~~~v~~~--~~-sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 309 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGI--AF-HPVHGTLATVGSDGRFSFWDKDARTKLK 309 (368)
T ss_dssp EC----CCCEEECCEEEE--EE-CTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred cccccccccccccceEEE--EE-ecCCCEEEEEccCCeEEEEECCCCcEEE
Confidence 1 23344 55 8899999999999999999998866554
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-27 Score=199.48 Aligned_cols=211 Identities=16% Similarity=0.226 Sum_probs=175.5
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC---eeEEEecCCCCCCeE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG---EMKWKSTGRHPGGLA 77 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~~h~~~v~ 77 (340)
|||+.+++....+. .|...|.+++|+|+++ +|++|+.||.|++|++... +....+.. |...|.
T Consensus 43 vw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~---------~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~-~~~~i~ 108 (313)
T 3odt_A 43 LWSKDDQWLGTVVY----TGQGFLNSVCYDSEKE---------LLLFGGKDTMINGVPLFATSGEDPLYTLIG-HQGNVC 108 (313)
T ss_dssp EEEESSSEEEEEEE----ECSSCEEEEEEETTTT---------EEEEEETTSCEEEEETTCCTTSCC-CEECC-CSSCEE
T ss_pred EEECCCCEEEEEee----cCCccEEEEEECCCCC---------EEEEecCCCeEEEEEeeecCCCCcccchhh-cccCEE
Confidence 69998888888777 7899999999999999 9999999999999998765 45666777 999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEcc-CCCEEEEecCc--EEEEECCCCceeEEeec-
Q 036605 78 GLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLC-EEKIFALASSE--VRILSLENGEEVLKFSD- 153 (340)
Q Consensus 78 ~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~~--i~i~d~~~~~~~~~~~~- 153 (340)
+++| +++.|++++.||.|++|| .++....+..|...+.+++++| ++.++++++.+ |++|| .++....+..
T Consensus 109 ~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~ 182 (313)
T 3odt_A 109 SLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGI 182 (313)
T ss_dssp EEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSS
T ss_pred EEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEecc
Confidence 9999 478999999999999999 6778888999999999999998 88888886544 99999 4556667766
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 154 DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 154 ~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
|...+.+++|+|++. +++++. |+.|++||+ ..++....+. .|...+..+ .+ ++++ .+++++.||.|++|
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~-dg~i~i~d~--~~~~~~~~~~---~~~~~i~~~--~~-~~~~-~l~~~~~dg~v~iw 251 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSN-DGLIKLVDM--HTGDVLRTYE---GHESFVYCI--KL-LPNG-DIVSCGEDRTVRIW 251 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEET-TSEEEEEET--TTCCEEEEEE---CCSSCEEEE--EE-CTTS-CEEEEETTSEEEEE
T ss_pred CcccEEEEEEcCCCe-EEEccC-CCeEEEEEC--Cchhhhhhhh---cCCceEEEE--EE-ecCC-CEEEEecCCEEEEE
Confidence 889999999999997 778777 999999999 3444333333 566666665 55 7787 58999999999999
Q ss_pred ECCCCCccC
Q 036605 234 DLKTVSQDE 242 (340)
Q Consensus 234 d~~~~~~~~ 242 (340)
|+.+++...
T Consensus 252 d~~~~~~~~ 260 (313)
T 3odt_A 252 SKENGSLKQ 260 (313)
T ss_dssp CTTTCCEEE
T ss_pred ECCCCceeE
Confidence 998876554
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=221.32 Aligned_cols=219 Identities=15% Similarity=0.125 Sum_probs=184.2
Q ss_pred CccCCCC----ceeeeeeCCCCCCCCC-eEEEEeec--cccccccccCceEEEEEcCCCcEEEEEccCC--------eeE
Q 036605 1 IWSTNDG----SLLAEWKQPDGEPVVS-YSCLACGF--VGKKRRKERGTLLLALGTSNGDILAVDVLTG--------EMK 65 (340)
Q Consensus 1 vwd~~~g----~~~~~~~~~~~~~~~~-v~~l~~sp--~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--------~~~ 65 (340)
|||+.++ +....+. +|... |++++|+| +++ +|++|+.||.|++||+.++ +..
T Consensus 43 v~~~~~~~~~~~~~~~~~----~h~~~~v~~~~~sp~~~~~---------~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~ 109 (615)
T 1pgu_A 43 VRCLDDGDSKVPPVVQFT----GHGSSVVTTVKFSPIKGSQ---------YLCSGDESGKVIVWGWTFDKESNSVEVNVK 109 (615)
T ss_dssp EEECCSSCCSSCSEEEEC----TTTTSCEEEEEECSSTTCC---------EEEEEETTSEEEEEEEEEEGGGTEEEEEEE
T ss_pred EEECCCCCCccccceEEe----cCCCceEEEEEECcCCCCC---------EEEEecCCCEEEEEeCCCCccccccccccc
Confidence 6899888 7888887 78889 99999999 999 9999999999999999755 566
Q ss_pred EEecCCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC-EEEEecCc--EE
Q 036605 66 WKSTGRHPGGLAGLAFAKKGRSLHVVGTN----GMASEMKSEMGEVIREFKASEKPISSSAFLCEEK-IFALASSE--VR 138 (340)
Q Consensus 66 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~~--i~ 138 (340)
..+.. |...|.+++|+|++++|++++.+ +.|.+|| .++.+..+..|...|.+++|+|++. .+++++.+ |+
T Consensus 110 ~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~ 186 (615)
T 1pgu_A 110 SEFQV-LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 186 (615)
T ss_dssp EEEEC-CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEE
T ss_pred chhhc-ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEE
Confidence 77777 99999999999999999999988 6888888 6778888999999999999999998 67775544 99
Q ss_pred EEECCCCceeEEeecCCC---CeEEEEECCC-CCEEEEEEcCCCeEEEEEccCCCCCccCCce-eeecCCCeeeeeecCC
Q 036605 139 ILSLENGEEVLKFSDDVG---PLQYVSASDG-AKIIITAGYGEKHLQVWRCDISSKTVNKGPA-LSMRHSPVAIDCKNSP 213 (340)
Q Consensus 139 i~d~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 213 (340)
+||+.+++.+..+..|.. .|.+++|+|+ +.+|++++. |+.|++||+ ..++....+. ....|...+..+ .|
T Consensus 187 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~--~~~~~~~~~~~~~~~~~~~v~~~--~~ 261 (615)
T 1pgu_A 187 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-DRKISCFDG--KSGEFLKYIEDDQEPVQGGIFAL--SW 261 (615)
T ss_dssp EEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET-TCCEEEEET--TTCCEEEECCBTTBCCCSCEEEE--EE
T ss_pred EEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC-CCeEEEEEC--CCCCEeEEecccccccCCceEEE--EE
Confidence 999999999999999998 9999999999 999999888 999999998 3443322220 000455556666 56
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 214 NGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 214 ~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+ ++.+|++++.||.|++||+.+++...
T Consensus 262 -~-~~~~l~~~~~d~~i~~wd~~~~~~~~ 288 (615)
T 1pgu_A 262 -L-DSQKFATVGADATIRVWDVTTSKCVQ 288 (615)
T ss_dssp -S-SSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred -c-CCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 5 89999999999999999998765443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=226.08 Aligned_cols=205 Identities=17% Similarity=0.195 Sum_probs=171.3
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc--CCeeEEEecCCCCCCeEEEEEecC--CCEEEEEeCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL--TGEMKWKSTGRHPGGLAGLAFAKK--GRSLHVVGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d 94 (340)
+|...|+|++|+|+++ +|++|+.||.|++||+. +++....+.+ |.+.|++++|+|+ ++.|++|+.|
T Consensus 7 gH~~~V~~l~~s~dg~---------~latg~~dg~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 7 AHNELIHDAVLDYYGK---------RLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp -CCCCEEEECCCSSSC---------CEEEEETTTEEEEEEEETTEEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETT
T ss_pred cCcceeEEEEECCCCC---------eEEEEECCCcEEEEecCCCCCccceeccC-CcCceEEEEecCCCCCCEEEEEeCC
Confidence 8999999999999998 89999999999999998 4456777887 9999999999988 9999999999
Q ss_pred CcEEEEeCCCCe--EEEEeecCCCCeeEEEEccC--CCEEEEecCc--EEEEECCCCc--eeEEeecCCCCeEEEEECC-
Q 036605 95 GMASEMKSEMGE--VIREFKASEKPISSSAFLCE--EKIFALASSE--VRILSLENGE--EVLKFSDDVGPLQYVSASD- 165 (340)
Q Consensus 95 g~i~~wd~~~~~--~~~~~~~~~~~i~~l~~~~~--~~~l~~~~~~--i~i~d~~~~~--~~~~~~~~~~~v~~~~~s~- 165 (340)
|.|++||+.+++ .+..+..|...|.+++|+|+ +..+++++.+ |++||+.++. ....+.+|...|.++.|+|
T Consensus 77 g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence 999999999987 66677889999999999999 9999886654 9999998873 3456688999999999999
Q ss_pred ------------CCCEEEEEEcCCCeEEEEEccCCCCCccCCc-eeeecCCCeeeeeecCCCCCC---CCEEEEEeCCCc
Q 036605 166 ------------GAKIIITAGYGEKHLQVWRCDISSKTVNKGP-ALSMRHSPVAIDCKNSPNGED---GTVILAVAESGV 229 (340)
Q Consensus 166 ------------~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~l~~~s~dg~ 229 (340)
++.++++++. ||.|++||++. +...... .....|...+..+ .| +|+ +.++++++.||.
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~-dg~I~iwd~~~--~~~~~~~~~~~~~h~~~V~~l--~~-sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNS--DAQTYVLESTLEGHSDWVRDV--AW-SPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp C---------CGGGCCEEEEET-TSCEEEEEEET--TTTEEEEEEEECCCSSCEEEE--EE-CCCCSSSEEEEEEESSSC
T ss_pred ccccccccccCCCCCEEEEEEC-CCeEEEEeccC--CcccceeeeeecCCCCcEEEE--Ee-ccCCCCCCEEEEEecCCE
Confidence 5889999888 99999999953 2211111 1112466666666 66 778 899999999999
Q ss_pred EEEEECCCCC
Q 036605 230 AYSWDLKTVS 239 (340)
Q Consensus 230 i~vwd~~~~~ 239 (340)
|++||+.++.
T Consensus 231 I~iwd~~~~~ 240 (753)
T 3jro_A 231 CIIWTQDNEQ 240 (753)
T ss_dssp EEEEEESSSS
T ss_pred EEEecCCCCC
Confidence 9999998864
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=206.83 Aligned_cols=206 Identities=17% Similarity=0.216 Sum_probs=176.6
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.+++....+. +|...|+|++| +++ +|++|+.||.|++||+.+++....+.+ |.+.|.+++
T Consensus 157 iwd~~~~~~~~~~~----~h~~~v~~l~~--~~~---------~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~ 220 (435)
T 1p22_A 157 IWDKNTLECKRILT----GHTGSVLCLQY--DER---------VIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLR 220 (435)
T ss_dssp EEESSSCCEEEEEC----CCSSCEEEEEC--CSS---------EEEEEETTSCEEEEESSSCCEEEEECC-CCSCEEEEE
T ss_pred EEeCCCCeEEEEEc----CCCCcEEEEEE--CCC---------EEEEEcCCCeEEEEECCCCcEEEEEcC-CCCcEEEEE
Confidence 69999999998887 89999999999 677 899999999999999999999999988 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEE---EEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEeecCC
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVI---REFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~~ 155 (340)
|+ +..|++|+.||.|++||+.++... ..+.+|...|.++++ ++.++++++. .|++||+++++.+..+.+|.
T Consensus 221 ~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (435)
T 1p22_A 221 FN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 296 (435)
T ss_dssp CC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred Ec--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC
Confidence 97 469999999999999999987654 567788999999998 6778887654 49999999999999999999
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 156 GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
..|.++.| ++.++++++. |+.|++||+ .+++....+. .|...+..+ ..++.+|++|+.||.|++||+
T Consensus 297 ~~v~~~~~--~~~~l~~g~~-dg~i~iwd~--~~~~~~~~~~---~h~~~v~~~-----~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 297 RGIACLQY--RDRLVVSGSS-DNTIRLWDI--ECGACLRVLE---GHEELVRCI-----RFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp SCEEEEEE--ETTEEEEEET-TSCEEEEET--TTCCEEEEEC---CCSSCEEEE-----ECCSSEEEEEETTSCEEEEEH
T ss_pred CcEEEEEe--CCCEEEEEeC-CCeEEEEEC--CCCCEEEEEe---CCcCcEEEE-----EecCCEEEEEeCCCcEEEEEC
Confidence 99999999 4678999887 999999999 4444433333 566666666 337889999999999999999
Q ss_pred CCCC
Q 036605 236 KTVS 239 (340)
Q Consensus 236 ~~~~ 239 (340)
.+..
T Consensus 364 ~~~~ 367 (435)
T 1p22_A 364 VAAL 367 (435)
T ss_dssp HHHT
T ss_pred CCCC
Confidence 8755
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=210.91 Aligned_cols=217 Identities=15% Similarity=0.172 Sum_probs=174.8
Q ss_pred CccCCCC-------ceeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEe--cC
Q 036605 1 IWSTNDG-------SLLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKS--TG 70 (340)
Q Consensus 1 vwd~~~g-------~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~ 70 (340)
|||+.++ +.+..+. +|...|++++|+|++ . +|++|+.||.|++||+.+++....+ ..
T Consensus 108 vw~~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~p~~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 174 (402)
T 2aq5_A 108 VWEIPDGGLVLPLREPVITLE----GHTKRVGIVAWHPTAQN---------VLLSAGCDNVILVWDVGTGAAVLTLGPDV 174 (402)
T ss_dssp EEECCTTCCSSCBCSCSEEEE----CCSSCEEEEEECSSBTT---------EEEEEETTSCEEEEETTTTEEEEEECTTT
T ss_pred EEEccCCCCccccCCceEEec----CCCCeEEEEEECcCCCC---------EEEEEcCCCEEEEEECCCCCccEEEecCC
Confidence 6888887 4556666 799999999999998 7 8999999999999999999998888 56
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEe-ecCCCC-eeEEEEccCCCEEEEe-----cCcEEEEECC
Q 036605 71 RHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREF-KASEKP-ISSSAFLCEEKIFALA-----SSEVRILSLE 143 (340)
Q Consensus 71 ~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~-i~~l~~~~~~~~l~~~-----~~~i~i~d~~ 143 (340)
|.+.|.+++|+|+++.|++++.||.|++||+++++.+..+ ..|... +.+++|+|++.+++++ ++.|++||+.
T Consensus 175 -~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 175 -HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK 253 (402)
T ss_dssp -CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETT
T ss_pred -CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCc
Confidence 9999999999999999999999999999999999998888 677765 8999999999999887 3349999998
Q ss_pred CCce-eEEe-ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCc-cCCceeeecCCCeeeeeecCCCCCCCCE
Q 036605 144 NGEE-VLKF-SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTV-NKGPALSMRHSPVAIDCKNSPNGEDGTV 220 (340)
Q Consensus 144 ~~~~-~~~~-~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (340)
+++. +... ..|...+..++|+|++.+|++++..|+.|++||++ .++. ...+. ...+...+..+ .| +|++.+
T Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~--~~~~~~~~l~-~~~~~~~v~~~--~~-sp~~~~ 327 (402)
T 2aq5_A 254 HLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT--SEAPFLHYLS-MFSSKESQRGM--GY-MPKRGL 327 (402)
T ss_dssp BCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC--SSTTCEEEEE-EECCSSCCSEE--EE-CCGGGS
T ss_pred cccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec--CCCcceEeec-ccccCCcccce--EE-eccccc
Confidence 8764 3333 35678899999999999998777669999999994 4332 11111 12233444444 55 788887
Q ss_pred EEEEeCCCcEEEEECCCCC
Q 036605 221 ILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 221 l~~~s~dg~i~vwd~~~~~ 239 (340)
++ +.++.+++|++.+..
T Consensus 328 ~~--s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 328 EV--NKCEIARFYKLHERK 344 (402)
T ss_dssp CG--GGTEEEEEEEEETTE
T ss_pred ce--ecceeEEEEEcCCCc
Confidence 65 467799999998743
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=208.89 Aligned_cols=213 Identities=13% Similarity=0.167 Sum_probs=177.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeec--cccccccccCceEEEEEcCCCcEEEEEccCCee--------------
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGF--VGKKRRKERGTLLLALGTSNGDILAVDVLTGEM-------------- 64 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp--~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-------------- 64 (340)
|||+.+++....+. +|...|.+++|++ ++. +|++|+.||.|++||+.++..
T Consensus 187 vwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~---------~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 253 (464)
T 3v7d_B 187 VWDIKKGCCTHVFE----GHNSTVRCLDIVEYKNIK---------YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 253 (464)
T ss_dssp EEETTTTEEEEEEC----CCSSCEEEEEEEESSSCE---------EEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred EEECCCCcEEEEEC----CCCCccEEEEEecCCCCC---------EEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence 69999999988887 8999999999995 557 899999999999999987652
Q ss_pred ---------EEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC
Q 036605 65 ---------KWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS 135 (340)
Q Consensus 65 ---------~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~ 135 (340)
...+.+ |...|.++ +++++.|++++.||.|++||+.+++.+..+.+|...|.+++|+|++.++++++.
T Consensus 254 ~~~~~~~~~~~~~~~-~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~ 330 (464)
T 3v7d_B 254 HTPEENPYFVGVLRG-HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM 330 (464)
T ss_dssp SCGGGCTTEEEEECC-CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred eccCCCeEEEEEccC-ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC
Confidence 344555 88888887 567899999999999999999999999999999999999999999999988665
Q ss_pred c--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCC
Q 036605 136 E--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSP 213 (340)
Q Consensus 136 ~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (340)
+ |++||+.+++.+..+.+|...|.++.|+ +.++++++. |+.|++||++ .... ... ..+......+ .+
T Consensus 331 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~-dg~v~vwd~~--~~~~--~~~--~~~~~~~~~~--~~ 399 (464)
T 3v7d_B 331 DTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAA-DGSIRGWDAN--DYSR--KFS--YHHTNLSAIT--TF 399 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEET-TSEEEEEETT--TCCE--EEE--EECTTCCCEE--EE
T ss_pred CCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeC-CCcEEEEECC--CCce--eee--ecCCCCccEE--EE
Confidence 4 9999999999999999999999999997 478999888 9999999984 3321 112 1222222222 33
Q ss_pred CCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 214 NGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 214 ~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
++++.++++++ ||.|++||+.+++.+.
T Consensus 400 -~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 400 -YVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp -EECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred -EeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 68889999988 8999999999987765
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=210.45 Aligned_cols=202 Identities=13% Similarity=0.129 Sum_probs=165.1
Q ss_pred CCCCCeEEEEeecc-ccccccccCceEEEEEcCCCcEEEEEccC----------CeeEEEecCCCCCCeEEEEEecCCC-
Q 036605 19 EPVVSYSCLACGFV-GKKRRKERGTLLLALGTSNGDILAVDVLT----------GEMKWKSTGRHPGGLAGLAFAKKGR- 86 (340)
Q Consensus 19 ~~~~~v~~l~~sp~-~~~~~~~~~~~~l~~g~~dg~i~i~d~~~----------~~~~~~~~~~h~~~v~~v~~~~~~~- 86 (340)
.|...|++++|+|+ +. +||+|+.+|.|++||+.+ ......+.+ |...|++++|+|++.
T Consensus 126 ~h~~~v~~l~~~p~~~~---------~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNAC---------VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG-HQKEGYGLSWNPNLNG 195 (430)
T ss_dssp EESSCCSEEEEETTEEE---------EEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC-CSSCCCCEEECTTSTT
T ss_pred cCCCcEEEEEECCCCCc---------EEEEECCCCcEEEEECCCcccccCccccCCCcEEecC-CCCCeEEEEeCCCCCC
Confidence 68899999999997 57 899999999999999986 566777777 999999999999988
Q ss_pred EEEEEeCCCcEEEEeCCCCeE-------EEEeecCCCCeeEEEEcc-CCCEEEEec--CcEEEEECCCC---ceeEEeec
Q 036605 87 SLHVVGTNGMASEMKSEMGEV-------IREFKASEKPISSSAFLC-EEKIFALAS--SEVRILSLENG---EEVLKFSD 153 (340)
Q Consensus 87 ~l~s~~~dg~i~~wd~~~~~~-------~~~~~~~~~~i~~l~~~~-~~~~l~~~~--~~i~i~d~~~~---~~~~~~~~ 153 (340)
.|++|+.||.|++||+.++.. ...+..|...|.+++|+| ++.++++++ +.|++||++++ +.+..+..
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 999999999999999987321 345678889999999999 677777754 44999999987 56677889
Q ss_pred CCCCeEEEEECCCCCE-EEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCC-CEEEEEeCCCcEE
Q 036605 154 DVGPLQYVSASDGAKI-IITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDG-TVILAVAESGVAY 231 (340)
Q Consensus 154 ~~~~v~~~~~s~~~~~-l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~s~dg~i~ 231 (340)
|...|.+++|+|++.+ +++++. |+.|++||++.. +.....+. .|...+..+ .| +|++ .+|++++.||.|+
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~~-dg~v~vwd~~~~-~~~~~~~~---~h~~~v~~i--~~-sp~~~~~l~s~~~d~~i~ 347 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGSA-DKTVALWDLRNL-KLKLHSFE---SHKDEIFQV--QW-SPHNETILASSGTDRRLH 347 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEET-TSEEEEEETTCT-TSCSEEEE---CCSSCEEEE--EE-CSSCTTEEEEEETTSCCE
T ss_pred CCCCeEEEEeCCCCCCEEEEEeC-CCeEEEEeCCCC-CCCeEEee---cCCCCEEEE--EE-CCCCCCEEEEEeCCCcEE
Confidence 9999999999999985 666666 999999999521 22222222 566666666 66 6777 5799999999999
Q ss_pred EEECCCC
Q 036605 232 SWDLKTV 238 (340)
Q Consensus 232 vwd~~~~ 238 (340)
+||+...
T Consensus 348 iwd~~~~ 354 (430)
T 2xyi_A 348 VWDLSKI 354 (430)
T ss_dssp EEEGGGT
T ss_pred EEeCCCC
Confidence 9999873
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=203.94 Aligned_cols=210 Identities=12% Similarity=0.045 Sum_probs=163.4
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeec--cccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGF--VGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp--~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
||..+++++..+. ..|...|.+++|+| +++ +|++|+.||+|++||+.+++........|...|.++
T Consensus 109 ~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~---------~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~ 176 (343)
T 3lrv_A 109 LDSKTNKVLREIE---VDSANEIIYMYGHNEVNTE---------YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSG 176 (343)
T ss_dssp EETTTCCEEEEEE---CCCSSCEEEEECCC---CC---------EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEE
T ss_pred eecCCcceeEEee---cCCCCCEEEEEcCCCCCCC---------EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEE
Confidence 5666777666666 35778999999999 999 999999999999999999988766655467789999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCeEE-EEeec-CCCCeeEEEEccCCCEEEEec-CcEEEEECCCCceeEEeec---
Q 036605 80 AFAKKGRSLHVVGTNGMASEMKSEMGEVI-REFKA-SEKPISSSAFLCEEKIFALAS-SEVRILSLENGEEVLKFSD--- 153 (340)
Q Consensus 80 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~-~~~~i~~l~~~~~~~~l~~~~-~~i~i~d~~~~~~~~~~~~--- 153 (340)
+|+|++.+|++|+.||.|++||+++++.+ ..+.. |..+|.+++|+|++.+|++++ +.|++||+++++.+..+..
T Consensus 177 ~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~ 256 (343)
T 3lrv_A 177 VLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTI 256 (343)
T ss_dssp EECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeeccccc
Confidence 99999999999999999999999999877 77887 999999999999999998854 3599999999877655433
Q ss_pred CCCCeE--EEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCC---CCCEEEEEeCCC
Q 036605 154 DVGPLQ--YVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGE---DGTVILAVAESG 228 (340)
Q Consensus 154 ~~~~v~--~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~s~dg 228 (340)
|...+. +++|+|++++|++++..|+.++||++. .... .... ..+..+ .| .+ +...+++++.||
T Consensus 257 ~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~--~~~~--~~~~-----~~~~~~--~~-~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 257 PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD--KKTK--NWTK-----DEESAL--CL-QSDTADFTDMDVVCGDG 324 (343)
T ss_dssp -----CCEEEEECTTSSEEEEEETTTTEEEEEEEC--TTTC--SEEE-----EEEEEC--CC-----CCCCEEEEEEETT
T ss_pred ccccccceEEEECCCCCEEEEecCCCCcEEEEEEc--cccc--ceEe-----cCceeE--ec-CccccccceeEEEecCC
Confidence 444444 699999999999977668999999984 2211 1111 111122 33 44 788999999999
Q ss_pred cEEEEEC
Q 036605 229 VAYSWDL 235 (340)
Q Consensus 229 ~i~vwd~ 235 (340)
.+.++-.
T Consensus 325 ~~~~~~~ 331 (343)
T 3lrv_A 325 GIAAILK 331 (343)
T ss_dssp EEEEEEE
T ss_pred ceEEEEe
Confidence 9988753
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=197.76 Aligned_cols=173 Identities=10% Similarity=0.075 Sum_probs=131.3
Q ss_pred CCcEEEEEc-cCCeeEEEecCCCCCCeEEEEEec---CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC---CeeEEEE
Q 036605 51 NGDILAVDV-LTGEMKWKSTGRHPGGLAGLAFAK---KGRSLHVVGTNGMASEMKSEMGEVIREFKASEK---PISSSAF 123 (340)
Q Consensus 51 dg~i~i~d~-~~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---~i~~l~~ 123 (340)
|+.|++|++ .+|+.+..+.. |...++.++|++ ++..|++++.|++|++||+.+|+.+..+.+|.. .+.+++|
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~-~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFL-MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEE-CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCcEEEEEECCCCceeeeecc-CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 888888888 44777777776 888888888888 678999999999999999999999999986543 5777899
Q ss_pred ccCCCEEEE------------ec--CcEEEEECCCCceeEEe-----ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEE
Q 036605 124 LCEEKIFAL------------AS--SEVRILSLENGEEVLKF-----SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWR 184 (340)
Q Consensus 124 ~~~~~~l~~------------~~--~~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd 184 (340)
+|+|.++++ ++ ++|++||..+++.+..+ .+|...+.+..++ +.++++++. |++|+|||
T Consensus 235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~-DgTIkIWD 311 (356)
T 2w18_A 235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILT-SGTIAIWD 311 (356)
T ss_dssp EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEET-TSCEEEEE
T ss_pred CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcC-CCcEEEEE
Confidence 999998754 22 23999999999877554 2555554444443 677888777 99999999
Q ss_pred ccCCCCCccCCceeeecCCCeeee-eecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 185 CDISSKTVNKGPALSMRHSPVAID-CKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
+ .+++....+. +|...+.. + .| +|+|.+|++|+.|++|+|||+
T Consensus 312 l--~tGk~l~tL~---gH~~~vvs~v--af-SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 312 L--LLGQCTALLP---PVSDQHWSFV--KW-SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp T--TTCSEEEEEC---CC--CCCCEE--EE-CSSSSEEEEECTTSCEEEEEE
T ss_pred C--CCCcEEEEec---CCCCCeEEEE--EE-CCCCCEEEEEECCCcEEEecC
Confidence 9 5665544443 45443332 2 45 899999999999999999985
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=229.78 Aligned_cols=203 Identities=12% Similarity=0.119 Sum_probs=164.9
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
+|...|+|++|+|+++ +||+|+.||+|++|+..+++....+. |...|.+++|+| +++|++++.|+.|+
T Consensus 15 gh~~~V~~lafspdg~---------~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fsp-g~~L~S~s~D~~v~ 82 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQN---------LLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFVK-GIYLVVINAKDTVY 82 (902)
T ss_dssp ECSSCEEEEEEETTTT---------EEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEET-TTEEEEEETTCEEE
T ss_pred CCCCCcEEEEECCCCC---------EEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEcC-CCEEEEEECcCeEE
Confidence 6889999999999999 99999999999999998877665543 788999999999 88999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCcee-----------EEeecCCCCeEEEEECC
Q 036605 99 EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEV-----------LKFSDDVGPLQYVSASD 165 (340)
Q Consensus 99 ~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~-----------~~~~~~~~~v~~~~~s~ 165 (340)
+||+.+++.+..+. +...|++++|+|++.++++++.+ |++||+.+++.. ..+.+|...|.+++|+|
T Consensus 83 lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 83 VLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp EEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred EEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 99999999888886 66789999999999999986554 999999988653 23367889999999999
Q ss_pred CC-CEEEEEEcCCCeEEEEEccCCCCCccCCceee---------------ecCCCeeeeeecCCCCCCCCEEEEEeCCCc
Q 036605 166 GA-KIIITAGYGEKHLQVWRCDISSKTVNKGPALS---------------MRHSPVAIDCKNSPNGEDGTVILAVAESGV 229 (340)
Q Consensus 166 ~~-~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~ 229 (340)
++ ..+++++. |+.| +||++ .++....+... ..|...+..+ .| +|+|.+|++++.||.
T Consensus 162 ~~~~~l~~g~~-dg~v-lWd~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v--~f-spdg~~lasgs~Dg~ 234 (902)
T 2oaj_A 162 RDIGTVLISYE-YVTL-TYSLV--ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQS--LY-HPNSLHIITIHEDNS 234 (902)
T ss_dssp TEEEEEEEECS-SCEE-EEETT--TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEE--EE-CTTSSEEEEEETTCC
T ss_pred CCCCEEEEEeC-CCcE-EEECC--CCceEEEEecccCCcCCCcccccccccccCCCeEEE--EE-cCCCCEEEEEECCCe
Confidence 74 56666555 9999 99994 33322211100 0123445555 66 899999999999999
Q ss_pred EEEEECCCCCcc
Q 036605 230 AYSWDLKTVSQD 241 (340)
Q Consensus 230 i~vwd~~~~~~~ 241 (340)
|++||+.+++.+
T Consensus 235 i~lWd~~~g~~~ 246 (902)
T 2oaj_A 235 LVFWDANSGHMI 246 (902)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCCcEE
Confidence 999999886543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=235.61 Aligned_cols=214 Identities=14% Similarity=0.185 Sum_probs=185.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||..+++.+..+. +|...|++++|+|+++ +|++|+.||.|++||+.+++.+..+.+ |.+.|.+++
T Consensus 641 vw~~~~~~~~~~~~----~h~~~v~~~~~s~~~~---------~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~ 706 (1249)
T 3sfz_A 641 VFKAETGEKLLDIK----AHEDEVLCCAFSSDDS---------YIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCH 706 (1249)
T ss_dssp EEETTTCCEEEEEC----CCSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEE
T ss_pred EEECCCCCEEEEec----cCCCCEEEEEEecCCC---------EEEEEeCCCeEEEEECCCCceEEEEcC-CCCcEEEEE
Confidence 69999999998887 8999999999999999 999999999999999999999999998 999999999
Q ss_pred Eec--CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEe-----
Q 036605 81 FAK--KGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKF----- 151 (340)
Q Consensus 81 ~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~----- 151 (340)
|+| ++..+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.++++++. .|++||+.+++....+
T Consensus 707 ~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 786 (1249)
T 3sfz_A 707 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 786 (1249)
T ss_dssp ECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCC
T ss_pred EecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccc
Confidence 999 5568999999999999999999999999999999999999999999988655 4999998776543322
Q ss_pred --------------------------------------------------ecCCCCeEEEEECCCCCEEEEEEcCCCeEE
Q 036605 152 --------------------------------------------------SDDVGPLQYVSASDGAKIIITAGYGEKHLQ 181 (340)
Q Consensus 152 --------------------------------------------------~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~ 181 (340)
.+|...+.+++|+|++.++++++. |+.|+
T Consensus 787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~v~ 865 (1249)
T 3sfz_A 787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVE 865 (1249)
T ss_dssp C--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS-SSCEE
T ss_pred ccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC-CCeEE
Confidence 167788999999999999999777 99999
Q ss_pred EEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 182 VWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 182 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
+|++ .++.....+. .|...+..+ .| +|++.++++++.||.|++|++..
T Consensus 866 vwd~--~~~~~~~~~~---~h~~~v~~v--~~-spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 866 LWNI--DSRLKVADCR---GHLSWVHGV--MF-SPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEET--TTTEEEEEEC---CCSSCEEEE--EE-CTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEEc--CCCceeeecC---CCccceEEE--EE-CCCCCEEEEEeCCCeEEEEEccc
Confidence 9998 4443333333 566666666 66 89999999999999999999765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-27 Score=208.09 Aligned_cols=209 Identities=10% Similarity=0.177 Sum_probs=180.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.+++.+..+. +|...|++++|+ +. +|++|+.||.|++||+.+++....+.+ |...|.+++
T Consensus 143 vwd~~~~~~~~~~~----~h~~~v~~~~~~--~~---------~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~ 206 (445)
T 2ovr_B 143 VWSAVTGKCLRTLV----GHTGGVWSSQMR--DN---------IIISGSTDRTLKVWNAETGECIHTLYG-HTSTVRCMH 206 (445)
T ss_dssp EEETTTCCEEEECC----CCSSCEEEEEEE--TT---------EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEE
T ss_pred EEECCCCcEEEEEc----CCCCCEEEEEec--CC---------EEEEEeCCCeEEEEECCcCcEEEEECC-CCCcEEEEE
Confidence 69999999998887 899999999997 56 799999999999999999999999988 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEeecCCCCe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~~~~v 158 (340)
|+ ++.|++++.||.|++||+.+++.+..+..|...+.++++ ++.++++++. .|++||+.+++.+..+.+|...|
T Consensus 207 ~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 282 (445)
T 2ovr_B 207 LH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282 (445)
T ss_dssp EE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred ec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce
Confidence 96 678999999999999999999999999999999999998 6777777544 49999999999999999999999
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.++.| ++.++++++. |+.|++||+ .+++....+. .|...+..+ ..++.++++++.||.|++||+.++
T Consensus 283 ~~~~~--~~~~l~~~~~-d~~i~i~d~--~~~~~~~~~~---~~~~~v~~~-----~~~~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 283 YSLQF--DGIHVVSGSL-DTSIRVWDV--ETGNCIHTLT---GHQSLTSGM-----ELKDNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp EEEEE--CSSEEEEEET-TSCEEEEET--TTCCEEEEEC---CCCSCEEEE-----EEETTEEEEEETTSCEEEEETTTC
T ss_pred EEEEE--CCCEEEEEeC-CCeEEEEEC--CCCCEEEEEc---CCcccEEEE-----EEeCCEEEEEeCCCeEEEEECCCC
Confidence 99999 7889999888 999999999 4444333332 455555555 456789999999999999999887
Q ss_pred CccC
Q 036605 239 SQDE 242 (340)
Q Consensus 239 ~~~~ 242 (340)
+.+.
T Consensus 350 ~~~~ 353 (445)
T 2ovr_B 350 QCLQ 353 (445)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 6554
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-26 Score=195.10 Aligned_cols=204 Identities=8% Similarity=0.138 Sum_probs=167.3
Q ss_pred CceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEec-CC
Q 036605 7 GSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAK-KG 85 (340)
Q Consensus 7 g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~-~~ 85 (340)
++....+. .|...|.+++| ++. +|++|+.||.|++|| .++....+.. |...|.+++|+| ++
T Consensus 94 ~~~~~~~~----~~~~~i~~~~~--~~~---------~l~~~~~d~~i~~~d--~~~~~~~~~~-~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 94 EDPLYTLI----GHQGNVCSLSF--QDG---------VVISGSWDKTAKVWK--EGSLVYNLQA-HNASVWDAKVVSFSE 155 (313)
T ss_dssp SCC-CEEC----CCSSCEEEEEE--ETT---------EEEEEETTSEEEEEE--TTEEEEEEEC-CSSCEEEEEEEETTT
T ss_pred CCcccchh----hcccCEEEEEe--cCC---------EEEEEeCCCCEEEEc--CCcEEEeccc-CCCceeEEEEccCCC
Confidence 34455555 78999999999 467 899999999999999 6777878887 999999999998 89
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeec-CCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEeecCCCCeEEEE
Q 036605 86 RSLHVVGTNGMASEMKSEMGEVIREFKA-SEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSDDVGPLQYVS 162 (340)
Q Consensus 86 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 162 (340)
+.|++++.||.|++|| .++....+.. +...+.+++|+|++. +++++ +.|++||+++++.+..+..|...|.+++
T Consensus 156 ~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 232 (313)
T 3odt_A 156 NKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK 232 (313)
T ss_dssp TEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred CEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE
Confidence 9999999999999999 4566667776 888999999999998 55543 3499999999999999999999999999
Q ss_pred ECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 163 ASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 163 ~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
|+|++ .|++++. |+.|++||+ ..++....+. .+...+..+ .| ++++. +++++.||.|++|++.+.+...
T Consensus 233 ~~~~~-~l~~~~~-dg~v~iwd~--~~~~~~~~~~---~~~~~i~~~--~~-~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 233 LLPNG-DIVSCGE-DRTVRIWSK--ENGSLKQVIT---LPAISIWSV--DC-MSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp ECTTS-CEEEEET-TSEEEEECT--TTCCEEEEEE---CSSSCEEEE--EE-CTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred EecCC-CEEEEec-CCEEEEEEC--CCCceeEEEe---ccCceEEEE--EE-ccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 99999 5888777 999999998 4444333333 444455555 55 78877 6679999999999998866554
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-27 Score=202.84 Aligned_cols=216 Identities=8% Similarity=0.007 Sum_probs=162.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc---------CCeeEEEecCC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL---------TGEMKWKSTGR 71 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~---------~~~~~~~~~~~ 71 (340)
|||+.+|+.+..+. ...|.++.|+|+ +++|+.|++|++|+.. +++.+..+...
T Consensus 62 iwd~~~~~~~~~~~------~~~v~~~~~~~~------------~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 62 FTQLKDSKTITTIT------TPNPRTGGEHPA------------IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEESSSSCEEEEE------EECCCTTCCCCS------------EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred EEECCCCcEEEEEe------cCCceeeeeCCc------------eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence 58888887776665 245666677652 7889999999999654 55555555544
Q ss_pred CCCCeEEEEEec--CCCEEEEEeCCCcEEEEeCCCCeEEEEee-cCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCc
Q 036605 72 HPGGLAGLAFAK--KGRSLHVVGTNGMASEMKSEMGEVIREFK-ASEKPISSSAFLCEEKIFALASSE--VRILSLENGE 146 (340)
Q Consensus 72 h~~~v~~v~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~ 146 (340)
|.+.|.+++|+| ++++|++++.||.|++||+.+++...... .+...+.+++|+|++.++++++.+ |++||+++++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence 888999999999 99999999999999999999999866653 345579999999999999986554 9999999998
Q ss_pred ee-EEeec-CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEE
Q 036605 147 EV-LKFSD-DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAV 224 (340)
Q Consensus 147 ~~-~~~~~-~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 224 (340)
.+ ..+.. |..+|.+++|+|++.+|++++. + .|++||++ ..+....+.....+...+......| +|++.+|+++
T Consensus 204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~-~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~l~~~ 278 (343)
T 3lrv_A 204 QASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q-TVVCFDLR--KDVGTLAYPTYTIPEFKTGTVTYDI-DDSGKNMIAY 278 (343)
T ss_dssp SCCEECCCCTTSCEEEEEECTTSSEEEEEES-S-BEEEEETT--SSTTCBSSCCCBC-----CCEEEEE-CTTSSEEEEE
T ss_pred CCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C-eEEEEEcC--CCCcceeecccccccccccceEEEE-CCCCCEEEEe
Confidence 87 78887 9999999999999999999774 4 99999995 3332222210001111111001144 8999999999
Q ss_pred eC-CCcEEEEECCCCC
Q 036605 225 AE-SGVAYSWDLKTVS 239 (340)
Q Consensus 225 s~-dg~i~vwd~~~~~ 239 (340)
+. |+.|++|++....
T Consensus 279 s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 279 SNESNSLTIYKFDKKT 294 (343)
T ss_dssp ETTTTEEEEEEECTTT
T ss_pred cCCCCcEEEEEEcccc
Confidence 98 9999999987644
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-26 Score=213.08 Aligned_cols=214 Identities=13% Similarity=0.098 Sum_probs=177.0
Q ss_pred eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC----eeEEEecCCCCCC-eEEEEEec
Q 036605 9 LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG----EMKWKSTGRHPGG-LAGLAFAK 83 (340)
Q Consensus 9 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~----~~~~~~~~~h~~~-v~~v~~~~ 83 (340)
+...|.+....|...|++++|+|+++ +|++++ ++.|.+||+.++ +....+.+ |.+. |++++|+|
T Consensus 6 ~~~~~~~~~~~~~~~v~~~~~spdg~---------~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~-h~~~~v~~~~~sp 74 (615)
T 1pgu_A 6 LKEIIPPQPSTQRNFTTHLSYDPTTN---------AIAYPC-GKSAFVRCLDDGDSKVPPVVQFTG-HGSSVVTTVKFSP 74 (615)
T ss_dssp EEEEECCCCCCCTTCCCCCEEETTTT---------EEEEEE-TTEEEEEECCSSCCSSCSEEEECT-TTTSCEEEEEECS
T ss_pred hhhccCCCCCCccCceeEEEECCCCC---------EEEEec-CCeEEEEECCCCCCccccceEEec-CCCceEEEEEECc
Confidence 34445544457889999999999999 899888 889999999998 88888988 9999 99999999
Q ss_pred --CCCEEEEEeCCCcEEEEeCCCC--------eEEEEeecCCCCeeEEEEccCCCEEEEecCc------EEEEECCCCce
Q 036605 84 --KGRSLHVVGTNGMASEMKSEMG--------EVIREFKASEKPISSSAFLCEEKIFALASSE------VRILSLENGEE 147 (340)
Q Consensus 84 --~~~~l~s~~~dg~i~~wd~~~~--------~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~------i~i~d~~~~~~ 147 (340)
++++|++++.||.|++||+.++ ..+..+..|...|.+++|+|+++++++++.+ |++|| .++.
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~ 152 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNS 152 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCE
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCc
Confidence 9999999999999999999755 6667788899999999999999999886543 55665 6778
Q ss_pred eEEeecCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCC---eeeeeecCCCCCC-CCEEE
Q 036605 148 VLKFSDDVGPLQYVSASDGAK-IIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSP---VAIDCKNSPNGED-GTVIL 222 (340)
Q Consensus 148 ~~~~~~~~~~v~~~~~s~~~~-~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~l~ 222 (340)
+..+.+|...|.+++|+|++. .+++++. |+.|++||+ ..++....+. .|.. .+..+ .| +|+ +.+|+
T Consensus 153 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~v~vwd~--~~~~~~~~~~---~~~~~~~~v~~~--~~-~~~~~~~l~ 223 (615)
T 1pgu_A 153 LGEVSGHSQRINACHLKQSRPMRSMTVGD-DGSVVFYQG--PPFKFSASDR---THHKQGSFVRDV--EF-SPDSGEFVI 223 (615)
T ss_dssp EEECCSCSSCEEEEEECSSSSCEEEEEET-TTEEEEEET--TTBEEEEEEC---SSSCTTCCEEEE--EE-CSTTCCEEE
T ss_pred ceeeecCCccEEEEEECCCCCcEEEEEeC-CCcEEEEeC--CCcceeeeec---ccCCCCceEEEE--EE-CCCCCCEEE
Confidence 888999999999999999998 6777666 999999998 3443333222 4554 55555 55 788 99999
Q ss_pred EEeCCCcEEEEECCCCCccCCC
Q 036605 223 AVAESGVAYSWDLKTVSQDEKT 244 (340)
Q Consensus 223 ~~s~dg~i~vwd~~~~~~~~~~ 244 (340)
+++.||.|++||+.+++.+..+
T Consensus 224 ~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 224 TVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp EEETTCCEEEEETTTCCEEEEC
T ss_pred EEeCCCeEEEEECCCCCEeEEe
Confidence 9999999999999887765544
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-26 Score=203.09 Aligned_cols=212 Identities=14% Similarity=0.252 Sum_probs=179.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||+.+++....+. +|...|.+++|+ +. ++++|+.||.|++||+.+++....+.+ |...|.+++
T Consensus 183 vwd~~~~~~~~~~~----~h~~~v~~~~~~--~~---------~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~ 246 (445)
T 2ovr_B 183 VWNAETGECIHTLY----GHTSTVRCMHLH--EK---------RVVSGSRDATLRVWDIETGQCLHVLMG-HVAAVRCVQ 246 (445)
T ss_dssp EEETTTTEEEEEEC----CCSSCEEEEEEE--TT---------EEEEEETTSEEEEEESSSCCEEEEEEC-CSSCEEEEE
T ss_pred EEECCcCcEEEEEC----CCCCcEEEEEec--CC---------EEEEEeCCCEEEEEECCCCcEEEEEcC-CcccEEEEE
Confidence 69999999988887 899999999995 56 799999999999999999999989888 999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEeecCCCCe
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSDDVGPL 158 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~~~~v 158 (340)
| ++..|++++.||.|++||+.+++.+..+..|...+.++++ ++.++++++. .|++||+.+++.+..+.+|...+
T Consensus 247 ~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v 322 (445)
T 2ovr_B 247 Y--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 322 (445)
T ss_dssp E--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE
T ss_pred E--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccE
Confidence 9 6889999999999999999999999999999999999998 7888887654 49999999999999999999999
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.++.++ +.++++++. |+.|++||++ +++....+.....|...+..+ . .++.++++++.||.|++||+.++
T Consensus 323 ~~~~~~--~~~l~~~~~-dg~i~vwd~~--~~~~~~~~~~~~~~~~~v~~~--~---~~~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 323 SGMELK--DNILVSGNA-DSTVKIWDIK--TGQCLQTLQGPNKHQSAVTCL--Q---FNKNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp EEEEEE--TTEEEEEET-TSCEEEEETT--TCCEEEEECSTTSCSSCEEEE--E---ECSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEe--CCEEEEEeC-CCeEEEEECC--CCcEEEEEccCCCCCCCEEEE--E---ECCCEEEEEeCCCeEEEEECCCC
Confidence 988884 568998887 9999999983 444333222111255555555 3 34689999999999999999987
Q ss_pred CccC
Q 036605 239 SQDE 242 (340)
Q Consensus 239 ~~~~ 242 (340)
+.+.
T Consensus 393 ~~~~ 396 (445)
T 2ovr_B 393 EFIR 396 (445)
T ss_dssp CEEE
T ss_pred ceee
Confidence 7655
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-27 Score=205.34 Aligned_cols=217 Identities=11% Similarity=0.014 Sum_probs=150.0
Q ss_pred CccCCCCceeee-eeCCCCCCCCCeEEEEeec--------cccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCC
Q 036605 1 IWSTNDGSLLAE-WKQPDGEPVVSYSCLACGF--------VGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGR 71 (340)
Q Consensus 1 vwd~~~g~~~~~-~~~~~~~~~~~v~~l~~sp--------~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 71 (340)
|||+.+++.... ......+|...|.+++|+| +++ +||+|+.|++|+|||+.++.....+..
T Consensus 115 lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~---------~las~s~D~tv~~Wd~~~~~~~~~~~~- 184 (393)
T 4gq1_A 115 LIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ---------VIASVGDDCTLIIWRLTDEGPILAGYP- 184 (393)
T ss_dssp EEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE---------EEEEEETTSEEEEEEEETTEEEEEEEE-
T ss_pred EEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC---------EEEEEECCCeEEEEECCCCceeeeecC-
Confidence 588888865432 1111148999999999998 778 999999999999999998887777777
Q ss_pred CCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeEEEE-------------------------eecCCCCeeEEEEc-
Q 036605 72 HPGGLAGLAFAKKGR-SLHVVGTNGMASEMKSEMGEVIRE-------------------------FKASEKPISSSAFL- 124 (340)
Q Consensus 72 h~~~v~~v~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~-------------------------~~~~~~~i~~l~~~- 124 (340)
|...|.+++|+|++. +|++++.|+.|++||+.+++.... ..+|...+.++.|+
T Consensus 185 ~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~ 264 (393)
T 4gq1_A 185 LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG 264 (393)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEET
T ss_pred CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeec
Confidence 889999999999875 799999999999999988764332 13456678888887
Q ss_pred cCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEEC-------------------CCCCEEEEEEcCCCeEEEE
Q 036605 125 CEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSAS-------------------DGAKIIITAGYGEKHLQVW 183 (340)
Q Consensus 125 ~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s-------------------~~~~~l~s~~~~d~~i~iw 183 (340)
|++..+++++.+ +++||+..++....+..|...+..+.+. +.+..+++++..|+.|++|
T Consensus 265 ~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lw 344 (393)
T 4gq1_A 265 SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLI 344 (393)
T ss_dssp TTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEE
Confidence 799999886554 9999998877666665555444433332 2344555555559999999
Q ss_pred EccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 184 RCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 184 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
|+ ..++..... ..|...+..+ +| +|+|.+|++++.+| +.+|.+.
T Consensus 345 d~--~~~~~~~~~---~~~~~~V~sv--af-spdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 345 NT--YEKDSNSIP---IQLGMPIVDF--CW-HQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ET--TCTTCCEEE---EECSSCEEEE--EE-CTTSSEEEEEESSE-EEEEEEG
T ss_pred EC--CCCcEEEEe---cCCCCcEEEE--EE-cCCCCEEEEEeCCC-eEEEEEe
Confidence 98 444433322 3666667777 77 89999999999887 7777654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=197.93 Aligned_cols=199 Identities=10% Similarity=-0.004 Sum_probs=162.8
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe---eEEEecCCCCCCeEEEEEecCCC-EEEEEeCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE---MKWKSTGRHPGGLAGLAFAKKGR-SLHVVGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d 94 (340)
+|...|++++|+|+++ +|++|+.||.|++||+.+++ ....+.. |...|.+++|+|+++ .|++++.|
T Consensus 9 ~h~~~v~~~~~s~~~~---------~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d 78 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS---------LLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQ 78 (342)
T ss_dssp CCSSCEEEEEEEGGGT---------EEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETT
T ss_pred CCCCcEEEEEEcCCCC---------EEEEEcCCCeEEEEEeCCCCccccceeeee-cCCceEEEEECCCCCcEEEEEcCC
Confidence 7999999999999999 99999999999999999887 2334445 999999999999999 99999999
Q ss_pred CcEEEEeC-CCCeEEEEeec--CCCCeeEEEEccCCCEEEEecCc--EEEEECCC---------CceeEEeecCCCCeEE
Q 036605 95 GMASEMKS-EMGEVIREFKA--SEKPISSSAFLCEEKIFALASSE--VRILSLEN---------GEEVLKFSDDVGPLQY 160 (340)
Q Consensus 95 g~i~~wd~-~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~---------~~~~~~~~~~~~~v~~ 160 (340)
|.|++||+ .+++. ..+.. |...|.+++|+| +.++++++.+ |++||+++ ++.+..+. |...+.+
T Consensus 79 g~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 155 (342)
T 1yfq_A 79 GEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFT 155 (342)
T ss_dssp SCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEE
T ss_pred CeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEE
Confidence 99999999 87765 66778 999999999999 8888886554 99999987 66666666 8899999
Q ss_pred EEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCC-CCCEEEEEeCCCcEEEEECCCC
Q 036605 161 VSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGE-DGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 161 ~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
++|+|++ +++++. |+.|++||++.. ... ........+...+..+ .+ ++ ++.++++++.||.|++|++...
T Consensus 156 ~~~~~~~--l~~~~~-d~~i~i~d~~~~-~~~-~~~~~~~~~~~~i~~i--~~-~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 156 MDTNSSR--LIVGMN-NSQVQWFRLPLC-EDD-NGTIEESGLKYQIRDV--AL-LPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EEECSSE--EEEEES-TTEEEEEESSCC-TTC-CCEEEECSCSSCEEEE--EE-CSGGGCEEEEEETTSEEEEEECCTT
T ss_pred EEecCCc--EEEEeC-CCeEEEEECCcc-ccc-cceeeecCCCCceeEE--EE-CCCCCCEEEEEecCCcEEEEEEcCC
Confidence 9999987 777677 999999999420 211 1111222344444444 55 78 8999999999999999999875
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-28 Score=213.93 Aligned_cols=208 Identities=11% Similarity=0.096 Sum_probs=162.0
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc---CCeeEEEecC-----------CCCCCeEEEE--Ee
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL---TGEMKWKSTG-----------RHPGGLAGLA--FA 82 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~---~~~~~~~~~~-----------~h~~~v~~v~--~~ 82 (340)
+|...|++++|+|+++ +|++|+.||.|++||+. +++....+.. .+...+.++. ++
T Consensus 109 ~h~~~v~~~~~~~~~~---------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 179 (437)
T 3gre_A 109 DCSSTVTQITMIPNFD---------AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN 179 (437)
T ss_dssp ECSSCEEEEEECTTSS---------EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred cCCCCEEEEEEeCCCC---------EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc
Confidence 4889999999999999 99999999999999994 5543332221 1456677777 56
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeEEEEeec--CCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEee-cCCCC
Q 036605 83 KKGRSLHVVGTNGMASEMKSEMGEVIREFKA--SEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFS-DDVGP 157 (340)
Q Consensus 83 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~-~~~~~ 157 (340)
+++..|++++.|+.|++||+++++.+..+.. |...|.+++|+|++.+|++++.+ |++||+++++.+..+. .|...
T Consensus 180 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 259 (437)
T 3gre_A 180 EEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP 259 (437)
T ss_dssp SSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCc
Confidence 7899999999999999999999999999987 78899999999999999986655 9999999998888885 78889
Q ss_pred eEEEEEC----CCCCEEEEEEcCCCeEEEEEccCCCCCccCCce----------ee-----------e--cCCCeeeeee
Q 036605 158 LQYVSAS----DGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA----------LS-----------M--RHSPVAIDCK 210 (340)
Q Consensus 158 v~~~~~s----~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~----------~~-----------~--~~~~~~~~~~ 210 (340)
|.+++|+ +++.+|++++. |+.|++||++ +++....+. +. . .|...+..+
T Consensus 260 v~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l- 335 (437)
T 3gre_A 260 ITHVEVCQFYGKNSVIVVGGSS-KTFLTIWNFV--KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI- 335 (437)
T ss_dssp EEEEEECTTTCTTEEEEEEEST-TEEEEEEETT--TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE-
T ss_pred eEEEEeccccCCCccEEEEEcC-CCcEEEEEcC--CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE-
Confidence 9999654 56778888776 9999999994 333222111 00 0 022222223
Q ss_pred cCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 211 NSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 211 ~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.+ + ++.+|++++.||.|++||+.+++...
T Consensus 336 -~~-~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 336 -SV-S-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp -EE-E-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred -EE-C-CceEEEecCCCCeEEEEECCCcccce
Confidence 33 4 56899999999999999999877655
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=207.95 Aligned_cols=214 Identities=14% Similarity=0.232 Sum_probs=170.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE---EEecCCCCCCeE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK---WKSTGRHPGGLA 77 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~---~~~~~~h~~~v~ 77 (340)
|||+.+++.+..+. +|...|.+++|+ +. ++++|+.||.|++||+.++... ..+.+ |.+.|.
T Consensus 197 vwd~~~~~~~~~~~----~h~~~v~~l~~~--~~---------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~ 260 (435)
T 1p22_A 197 VWDVNTGEMLNTLI----HHCEAVLHLRFN--NG---------MMVTCSKDRSIAVWDMASPTDITLRRVLVG-HRAAVN 260 (435)
T ss_dssp EEESSSCCEEEEEC----CCCSCEEEEECC--TT---------EEEEEETTSCEEEEECSSSSCCEEEEEECC-CSSCEE
T ss_pred EEECCCCcEEEEEc----CCCCcEEEEEEc--CC---------EEEEeeCCCcEEEEeCCCCCCceeeeEecC-CCCcEE
Confidence 69999999998887 789999999997 45 7999999999999999987644 55666 999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEeecCC
Q 036605 78 GLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 78 ~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~~ 155 (340)
+++| +++.|++++.||.|++||+.+++.+..+..|...+.+++++ +.++++++. .|++||+++++.+..+.+|.
T Consensus 261 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 336 (435)
T 1p22_A 261 VVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE 336 (435)
T ss_dssp EEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc
Confidence 9999 68899999999999999999999999999999999999984 567777544 49999999999999999999
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccC----CceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEE
Q 036605 156 GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNK----GPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAY 231 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~ 231 (340)
..|.+++| ++.+|++++. ||.|++||++........ .......|...+..+ . .++.+|++++.||.|+
T Consensus 337 ~~v~~~~~--~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~---~~~~~l~s~s~Dg~i~ 408 (435)
T 1p22_A 337 ELVRCIRF--DNKRIVSGAY-DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL--Q---FDEFQIVSSSHDDTIL 408 (435)
T ss_dssp SCEEEEEC--CSSEEEEEET-TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE--E---ECSSCEEECCSSSEEE
T ss_pred CcEEEEEe--cCCEEEEEeC-CCcEEEEECCCCCCccccccchheeeccCCCCCeEEE--E---eCCCEEEEEeCCCEEE
Confidence 99999999 6789999887 999999998422211000 111122555555555 2 3678899999999999
Q ss_pred EEECCCCCccC
Q 036605 232 SWDLKTVSQDE 242 (340)
Q Consensus 232 vwd~~~~~~~~ 242 (340)
+||+.+.....
T Consensus 409 iwd~~~~~~~~ 419 (435)
T 1p22_A 409 IWDFLNDPAAQ 419 (435)
T ss_dssp EEC--------
T ss_pred EEECCCCCCcc
Confidence 99998755443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=202.26 Aligned_cols=170 Identities=14% Similarity=0.133 Sum_probs=144.5
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEE-ecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWK-STGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~h~~~v~~v 79 (340)
|||+.+++.+..+. |...|.+++|+|+++ +|++++.+ .+.+|+..+++.... ....|...|.++
T Consensus 161 iwd~~~~~~~~~~~-----~~~~V~~v~fspdg~---------~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v 225 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-----TRGEVKDLHFSTDGK---------VVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKI 225 (365)
T ss_dssp EEETTTTEEEEEEE-----CSSCCCEEEECTTSS---------EEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEE
T ss_pred EeECCCCcEEEEeC-----CCCceEEEEEccCCc---------eEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEE
Confidence 69999999888776 557899999999999 89988855 577777777765433 333488899999
Q ss_pred EEecCCCEEEEEeCCC----cEEEEeCCCCeE----EEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeE
Q 036605 80 AFAKKGRSLHVVGTNG----MASEMKSEMGEV----IREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVL 149 (340)
Q Consensus 80 ~~~~~~~~l~s~~~dg----~i~~wd~~~~~~----~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~ 149 (340)
+|+|+++.+++++.|+ .+..|++..+.. ...+..|...|++++|+|+|++|++++.+ |+|||+.+++.+.
T Consensus 226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~ 305 (365)
T 4h5i_A 226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK 305 (365)
T ss_dssp EEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE
Confidence 9999999999999886 688899876653 34567888999999999999999987655 9999999999988
Q ss_pred Ee-ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 150 KF-SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 150 ~~-~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
.+ .+|...|++++|+|||++|++++. |++|+||+++
T Consensus 306 ~~~~gH~~~V~~v~fSpdg~~laS~S~-D~tvrvw~ip 342 (365)
T 4h5i_A 306 IFKQAHSFAITEVTISPDSTYVASVSA-ANTIHIIKLP 342 (365)
T ss_dssp EETTSSSSCEEEEEECTTSCEEEEEET-TSEEEEEECC
T ss_pred EecCcccCCEEEEEECCCCCEEEEEeC-CCeEEEEEcC
Confidence 86 789999999999999999999888 9999999994
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-27 Score=202.30 Aligned_cols=212 Identities=11% Similarity=0.121 Sum_probs=165.0
Q ss_pred CccCCC-Ccee-eeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEE
Q 036605 1 IWSTND-GSLL-AEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~-g~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~ 78 (340)
|||+.+ +..+ ..+. +|...|++++|+|+++ +|++|+.||.|++||+.+++... +.. |...|.+
T Consensus 68 iw~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~---------~l~s~~~dg~v~iwd~~~~~~~~-~~~-~~~~v~~ 132 (368)
T 3mmy_A 68 CWEVQDSGQTIPKAQQ----MHTGPVLDVCWSDDGS---------KVFTASCDKTAKMWDLSSNQAIQ-IAQ-HDAPVKT 132 (368)
T ss_dssp EEEECTTSCEEEEEEE----ECSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTTEEEE-EEE-CSSCEEE
T ss_pred EEEcCCCCceeEEEec----cccCCEEEEEECcCCC---------EEEEEcCCCcEEEEEcCCCCcee-ecc-ccCceEE
Confidence 688887 5554 5665 7899999999999999 99999999999999999998665 444 9999999
Q ss_pred EEE--ecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC-----------------------------------------
Q 036605 79 LAF--AKKGRSLHVVGTNGMASEMKSEMGEVIREFKASE----------------------------------------- 115 (340)
Q Consensus 79 v~~--~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~----------------------------------------- 115 (340)
++| ++++.+|++++.||.|++||+++++.+..+..+.
T Consensus 133 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 212 (368)
T 3mmy_A 133 IHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLK 212 (368)
T ss_dssp EEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCS
T ss_pred EEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhcccccc
Confidence 999 8899999999999999999999887665554332
Q ss_pred CCeeEEEEccCCCE----EEEec--CcEEEEECCCC---ceeEEeecCCC------------CeEEEEECCCCCEEEEEE
Q 036605 116 KPISSSAFLCEEKI----FALAS--SEVRILSLENG---EEVLKFSDDVG------------PLQYVSASDGAKIIITAG 174 (340)
Q Consensus 116 ~~i~~l~~~~~~~~----l~~~~--~~i~i~d~~~~---~~~~~~~~~~~------------~v~~~~~s~~~~~l~s~~ 174 (340)
..+.++++.++... +++++ +.|++||+... ..+..+..|.. .|.+++|+|++++|++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 292 (368)
T 3mmy_A 213 HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292 (368)
T ss_dssp SCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred CCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc
Confidence 22344444444332 55543 44999999887 45667777765 799999999999999988
Q ss_pred cCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 175 YGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
. |+.|++||+ .+++....+. .|...+..+ .| +|++.+|++++.|+..+.|++.
T Consensus 293 ~-dg~i~iwd~--~~~~~~~~~~---~~~~~v~~~--~~-s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 293 S-DGRFSFWDK--DARTKLKTSE---QLDQPISAC--CF-NHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp T-TSCEEEEET--TTTEEEEECC---CCSSCEEEE--EE-CTTSSCEEEEECCCSTTCGGGC
T ss_pred c-CCeEEEEEC--CCCcEEEEec---CCCCCceEE--EE-CCCCCeEEEEeccccccccccc
Confidence 8 999999999 4554444333 556666666 66 8999999999999866555543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-26 Score=196.47 Aligned_cols=213 Identities=10% Similarity=0.106 Sum_probs=153.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
||+..+.+.+.++. .|...|+|++|+|+++ +|++|+.+| +++||+.+++....... ..+..++
T Consensus 3 i~s~~~~~~~~~~~----~h~~~V~~v~fs~dg~---------~la~g~~~~-~~iw~~~~~~~~~~~~~---~~~~~~~ 65 (355)
T 3vu4_A 3 LGSMITRNPIVPEN----HVSNPVTDYEFNQDQS---------CLILSTLKS-FEIYNVHPVAHIMSQEM---RHLSKVR 65 (355)
T ss_dssp --------------------CCCCCEEEECTTSS---------EEEEECSSE-EEEEEETTEEEEEEEEC---SCCCEEE
T ss_pred cccccccCCccccc----cCCCceEEEEECCCCC---------EEEEEcCCE-EEEEecCCcceeeeeec---CCeEEEE
Confidence 46666666665555 7899999999999999 899998776 78999998876655442 2588889
Q ss_pred EecCCCEE-EEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC-------------------------------
Q 036605 81 FAKKGRSL-HVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEK------------------------------- 128 (340)
Q Consensus 81 ~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~------------------------------- 128 (340)
+.++++.+ ++++.|+.|++||+.+++.+..+. +...|.+++++++..
T Consensus 66 ~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 144 (355)
T 3vu4_A 66 MLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCE 144 (355)
T ss_dssp ECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEE
T ss_pred EcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEE
Confidence 99888877 556778999999999999888876 556788888877532
Q ss_pred ----EEEEe----cCcEEEEECCCCc----------------eeEEeecCCCCeEEEEECCCCCEEEEEEcCCCe-EEEE
Q 036605 129 ----IFALA----SSEVRILSLENGE----------------EVLKFSDDVGPLQYVSASDGAKIIITAGYGEKH-LQVW 183 (340)
Q Consensus 129 ----~l~~~----~~~i~i~d~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~-i~iw 183 (340)
+++++ ++.|++||+.++. .+..+.+|...|.+++|+|++.+|++++. |++ |++|
T Consensus 145 ~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-d~~~v~iw 223 (355)
T 3vu4_A 145 FSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-DGTIIRVF 223 (355)
T ss_dssp EETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET-TCSEEEEE
T ss_pred EEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC-CCCEEEEE
Confidence 22221 2237777777654 15678899999999999999999999888 998 9999
Q ss_pred EccCCCCCccCCceeeec-CCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 184 RCDISSKTVNKGPALSMR-HSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 184 d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
|+ .+++.... +..+ |...+..+ .| +|++.+|++++.||.|++||+....
T Consensus 224 d~--~~~~~~~~--~~~g~h~~~v~~~--~~-s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 224 KT--EDGVLVRE--FRRGLDRADVVDM--KW-STDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp ET--TTCCEEEE--EECTTCCSCEEEE--EE-CTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EC--CCCcEEEE--EEcCCCCCcEEEE--EE-CCCCCEEEEEECCCEEEEEEccCCC
Confidence 99 44443322 2212 66666666 67 8999999999999999999998753
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=205.52 Aligned_cols=202 Identities=14% Similarity=0.114 Sum_probs=164.3
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe---eEEEecC----------------------------
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE---MKWKSTG---------------------------- 70 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~---------------------------- 70 (340)
.++.|++|+|+|+ +|+++ .++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~---------~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (450)
T 2vdu_B 5 HPLQNLLTSRDGS---------LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENK 74 (450)
T ss_dssp CCCCEEEECSSSS---------EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC--------------------------
T ss_pred ccEEEEEecCCCC---------EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccc
Confidence 5788999999999 66665 57899999999998 5555442
Q ss_pred -------------------------CCCCCeEEEEEecCCCEE-EEEeCCCcEEEEeCC--CCeEEEEee--cCCCCeeE
Q 036605 71 -------------------------RHPGGLAGLAFAKKGRSL-HVVGTNGMASEMKSE--MGEVIREFK--ASEKPISS 120 (340)
Q Consensus 71 -------------------------~h~~~v~~v~~~~~~~~l-~s~~~dg~i~~wd~~--~~~~~~~~~--~~~~~i~~ 120 (340)
.|.+.|++++|+|++++| ++++.||.|++||+. +++.+..+. .+...|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~ 154 (450)
T 2vdu_B 75 KLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNA 154 (450)
T ss_dssp -------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEE
T ss_pred ccccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceE
Confidence 134479999999999996 888899999999999 888777776 56788999
Q ss_pred EEEccCCCEEEEecCc--EEEEECCCCceeE----EeecCCCCeEEEEECCC---CCEEEEEEcCCCeEEEEEccCCCCC
Q 036605 121 SAFLCEEKIFALASSE--VRILSLENGEEVL----KFSDDVGPLQYVSASDG---AKIIITAGYGEKHLQVWRCDISSKT 191 (340)
Q Consensus 121 l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~----~~~~~~~~v~~~~~s~~---~~~l~s~~~~d~~i~iwd~~~~~~~ 191 (340)
++|+|++.+|++++.+ +++|++.+++... .+.+|...|.+++|+|+ +++|++++. |+.|++||++ .+.
T Consensus 155 ~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-d~~i~vwd~~--~~~ 231 (450)
T 2vdu_B 155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-DEHIKISHYP--QCF 231 (450)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET-TSCEEEEEES--CTT
T ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC-CCcEEEEECC--CCc
Confidence 9999999999987654 9999998876544 77889999999999999 989999887 9999999993 433
Q ss_pred ccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 192 VNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.... +..+|...+..+ .| + ++.+|++++.||.|++||+.+++.+.
T Consensus 232 ~~~~--~~~~h~~~v~~~--~~-s-d~~~l~s~~~d~~v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 232 IVDK--WLFGHKHFVSSI--CC-G-KDYLLLSAGGDDKIFAWDWKTGKNLS 276 (450)
T ss_dssp CEEE--ECCCCSSCEEEE--EE-C-STTEEEEEESSSEEEEEETTTCCEEE
T ss_pred eeee--eecCCCCceEEE--EE-C-CCCEEEEEeCCCeEEEEECCCCcEee
Confidence 2221 122566666666 66 6 99999999999999999999876544
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-25 Score=196.85 Aligned_cols=215 Identities=18% Similarity=0.299 Sum_probs=178.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-eEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-MKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~h~~~v~~v 79 (340)
|||+.+++.+..+. +|...+.+++|+ +. +|++|+.|+.+++||..... .+..+.+ |...+..+
T Consensus 173 iWd~~~~~~~~~~~----~h~~~v~~~s~~--~~---------~l~sgs~d~~i~~~d~~~~~~~~~~~~~-h~~~~~~~ 236 (420)
T 4gga_A 173 LWDVQQQKRLRNMT----SHSARVGSLSWN--SY---------ILSSGSRSGHIHHHDVRVAEHHVATLSG-HSQEVCGL 236 (420)
T ss_dssp EEETTTTEEEEEEC----CCSSCEEEEEEE--TT---------EEEEEETTSEEEEEETTSSSCEEEEEEC-CSSCEEEE
T ss_pred EEEcCCCcEEEEEe----CCCCceEEEeeC--CC---------EEEEEeCCCceeEeeecccceeeEEecc-cccceeee
Confidence 69999999998887 899999998775 67 89999999999999988654 4566777 99999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCe----EEEEeecCCCCeeEEEEccCCC-EEEEe----cCcEEEEECCCCceeEE
Q 036605 80 AFAKKGRSLHVVGTNGMASEMKSEMGE----VIREFKASEKPISSSAFLCEEK-IFALA----SSEVRILSLENGEEVLK 150 (340)
Q Consensus 80 ~~~~~~~~l~s~~~dg~i~~wd~~~~~----~~~~~~~~~~~i~~l~~~~~~~-~l~~~----~~~i~i~d~~~~~~~~~ 150 (340)
.|+|++..+++++.|+.|++|+..+++ .+.....|...|.+++|+|.+. +++++ ++.|++||+.+++.+..
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred eecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 999999999999999999999998765 3455677888999999999765 44543 24499999999988887
Q ss_pred eecCCCCeEEEEECCCCCEEEEEE-cCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCc
Q 036605 151 FSDDVGPLQYVSASDGAKIIITAG-YGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGV 229 (340)
Q Consensus 151 ~~~~~~~v~~~~~s~~~~~l~s~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~ 229 (340)
+..| ..+.++.|++++..+++++ ..|+.|+|||+ .+++....+. +|...+..+ .| +|+|.+|++|+.||.
T Consensus 317 ~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~--~~~~~v~~l~---gH~~~V~~l--~~-spdg~~l~S~s~D~t 387 (420)
T 4gga_A 317 VDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKY--PTMAKVAELK---GHTSRVLSL--TM-SPDGATVASAAADET 387 (420)
T ss_dssp EECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEET--TTCCEEEEEC---CCSSCEEEE--EE-CTTSSCEEEEETTTE
T ss_pred eccc-cceeeeeecCCCCeEEEEEecCCCEEEEEEC--CCCcEEEEEc---CCCCCEEEE--EE-cCCCCEEEEEecCCe
Confidence 7754 5788999999999988865 34899999999 4555554444 788777777 67 899999999999999
Q ss_pred EEEEECCCCCc
Q 036605 230 AYSWDLKTVSQ 240 (340)
Q Consensus 230 i~vwd~~~~~~ 240 (340)
|+|||+.....
T Consensus 388 vriWdv~~~~~ 398 (420)
T 4gga_A 388 LRLWRCFELDP 398 (420)
T ss_dssp EEEECCSCSSC
T ss_pred EEEEECCCCCc
Confidence 99999876443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-26 Score=202.88 Aligned_cols=207 Identities=8% Similarity=0.019 Sum_probs=158.1
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCC-----Ce
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPG-----GL 76 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~-----~v 76 (340)
|+..+++....+. ..|...|.+++|||+|+ +||+++.||.|++||.+. .+..+. |.. .|
T Consensus 69 ~~~~~~~~~~~~~---~~~~~~V~~vawSPdG~---------~LAs~s~dg~V~iwd~~~--~l~~l~--~~~~~~~~sv 132 (588)
T 2j04_A 69 LDFELAQQNGLLN---SQPVCYPRVCKPSPIDD---------WMAVLSNNGNVSVFKDNK--MLTNLD--SKGNLSSRTY 132 (588)
T ss_dssp TTTSCCCSSCSST---TSCSCCEEEEEECSSSS---------CEEEEETTSCEEEEETTE--EEEECC--CSSCSTTTCE
T ss_pred EEEEeCCCceEee---cCCCCcEEEEEECCCCC---------EEEEEeCCCcEEEEeCCc--eeeecc--CCCccccccE
Confidence 5666555333333 24578999999999999 899999999999999544 555555 443 59
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCe-------EEEEe----ecCCCCeeEEEEccCCCEEEE-ecCcEEEEECCC
Q 036605 77 AGLAFAKKGRSLHVVGTNGMASEMKSEMGE-------VIREF----KASEKPISSSAFLCEEKIFAL-ASSEVRILSLEN 144 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~-------~~~~~----~~~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~~~ 144 (340)
.+++|+|||++|++|+.||.|++||+.++. .+..+ .+|...|.+++|+|+| ++++ .|+.|++||+.+
T Consensus 133 ~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 133 HCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp EEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCS
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCC
Confidence 999999999999999999999999999875 35665 5667899999999999 4444 344499999988
Q ss_pred Cce---eEEe-ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCE
Q 036605 145 GEE---VLKF-SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTV 220 (340)
Q Consensus 145 ~~~---~~~~-~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (340)
+.. ...+ .+|...|.+++|+ +.+|+++ . ++.|++||+ ..++.. .+..+|...+.++... .++++..
T Consensus 212 ~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa-~-~~tIkLWd~--~~~~~~---~~~~gh~~~V~~va~~-~s~d~~~ 281 (588)
T 2j04_A 212 SSHQPVSRMIQNASRRKITDLKIV--DYKVVLT-C-PGYVHKIDL--KNYSIS---SLKTGSLENFHIIPLN-HEKESTI 281 (588)
T ss_dssp SSSCCCEEEEECCCSSCCCCEEEE--TTEEEEE-C-SSEEEEEET--TTTEEE---EEECSCCSCCCEEEET-TCSSCEE
T ss_pred CccccceeeecccccCcEEEEEEE--CCEEEEE-e-CCeEEEEEC--CCCeEE---EEEcCCCceEEEEEee-eCCCCCE
Confidence 763 3456 4788899999999 5788875 4 699999998 333221 2233666666665222 2689999
Q ss_pred EEEEeCCCcEEEEECC
Q 036605 221 ILAVAESGVAYSWDLK 236 (340)
Q Consensus 221 l~~~s~dg~i~vwd~~ 236 (340)
+++++.||. ++|...
T Consensus 282 La~a~edG~-klw~~d 296 (588)
T 2j04_A 282 LLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEECSSCEE-EEEESS
T ss_pred EEEEcCCCC-EEEeec
Confidence 999999999 999986
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-26 Score=196.34 Aligned_cols=218 Identities=13% Similarity=0.078 Sum_probs=168.2
Q ss_pred CccCCCCc---eeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEc-cCCeeEEEecC-CCCCC
Q 036605 1 IWSTNDGS---LLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDV-LTGEMKWKSTG-RHPGG 75 (340)
Q Consensus 1 vwd~~~g~---~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~-~~~~~~~~~~~-~h~~~ 75 (340)
|||+.++. ....+. .|...|++++|+|+++ .+|++|+.||.|++||+ .+++. ..+.. .|...
T Consensus 37 iw~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~--------~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~ 103 (342)
T 1yfq_A 37 VYKFDIQAKNVDLLQSL----RYKHPLLCCNFIDNTD--------LQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLG 103 (342)
T ss_dssp EEEEETTTTEEEEEEEE----ECSSCEEEEEEEESSS--------EEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSC
T ss_pred EEEeCCCCccccceeee----ecCCceEEEEECCCCC--------cEEEEEcCCCeEEEEEeccCCce-EeccccCCCCc
Confidence 58887776 223333 5889999999999874 15899999999999999 88764 34432 28899
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCC---------CeEEEEeecCCCCeeEEEEccCCCEEEE--ecCcEEEEECCC
Q 036605 76 LAGLAFAKKGRSLHVVGTNGMASEMKSEM---------GEVIREFKASEKPISSSAFLCEEKIFAL--ASSEVRILSLEN 144 (340)
Q Consensus 76 v~~v~~~~~~~~l~s~~~dg~i~~wd~~~---------~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~~i~i~d~~~ 144 (340)
|.+++|+| +..|++++.|+.|++||+.+ ++.+..+. +...+.+++|+|++ +++ .++.|++||+++
T Consensus 104 v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 104 ICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp EEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSC
T ss_pred eEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCc
Confidence 99999999 99999999999999999987 66666665 78899999999998 444 445599999998
Q ss_pred -Cce--eEEeecCCCCeEEEEECC-CCCEEEEEEcCCCeEEEEEccCCC----CCccCCceeeecCCC---------eee
Q 036605 145 -GEE--VLKFSDDVGPLQYVSASD-GAKIIITAGYGEKHLQVWRCDISS----KTVNKGPALSMRHSP---------VAI 207 (340)
Q Consensus 145 -~~~--~~~~~~~~~~v~~~~~s~-~~~~l~s~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~---------~~~ 207 (340)
+.. ......|...+.+++|+| ++.++++++. |+.|++|+++... ......+. .|.. .+.
T Consensus 180 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~ 255 (342)
T 1yfq_A 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI-DGRVAVEFFDDQGDDYNSSKRFAFR---CHRLNLKDTNLAYPVN 255 (342)
T ss_dssp CTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-TSEEEEEECCTTCCSTTCTTCEEEE---CCCCCTTCCSSCCCEE
T ss_pred cccccceeeecCCCCceeEEEECCCCCCEEEEEec-CCcEEEEEEcCCCcccccccceeee---cccccccccccceeEE
Confidence 543 234456888999999999 9999999888 9999999995320 12211221 3322 444
Q ss_pred eeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 208 DCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 208 ~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.+ .| +|++.+|++++.||.|++||+.+++.+.
T Consensus 256 ~~--~~-s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 256 SI--EF-SPRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp EE--EE-CTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred EE--EE-cCCCCEEEEecCCceEEEEcCccHhHhh
Confidence 44 55 7899999999999999999998776554
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=190.18 Aligned_cols=171 Identities=16% Similarity=0.275 Sum_probs=146.0
Q ss_pred CccCCCC----ceeeeeeCCCCCCCCCeEEEEeec--cccccccccCceEEEEEcCCCcEEEEEccCC---------eeE
Q 036605 1 IWSTNDG----SLLAEWKQPDGEPVVSYSCLACGF--VGKKRRKERGTLLLALGTSNGDILAVDVLTG---------EMK 65 (340)
Q Consensus 1 vwd~~~g----~~~~~~~~~~~~~~~~v~~l~~sp--~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~---------~~~ 65 (340)
|||+.++ +....+. +|...|++++|+| +++ +|++|+.||.|++||+.++ +..
T Consensus 37 iw~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~d~~---------~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 103 (351)
T 3f3f_A 37 VFKLDKDTSNWELSDSWR----AHDSSIVAIDWASPEYGR---------IIASASYDKTVKLWEEDPDQEECSGRRWNKL 103 (351)
T ss_dssp EEEECSSSCCEEEEEEEE----CCSSCEEEEEECCGGGCS---------EEEEEETTSCEEEEEECTTSCTTSSCSEEEE
T ss_pred EEECCCCCCcceecceec----cCCCcEEEEEEcCCCCCC---------EEEEEcCCCeEEEEecCCCcccccccCccee
Confidence 5888766 3555666 7999999999999 578 8999999999999999887 556
Q ss_pred EEecCCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCe-------------------------------------
Q 036605 66 WKSTGRHPGGLAGLAFAKK--GRSLHVVGTNGMASEMKSEMGE------------------------------------- 106 (340)
Q Consensus 66 ~~~~~~h~~~v~~v~~~~~--~~~l~s~~~dg~i~~wd~~~~~------------------------------------- 106 (340)
..+.. |.+.|.+++|+|+ +.+|++++.||.|++||+.+++
T Consensus 104 ~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 182 (351)
T 3f3f_A 104 CTLND-SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP 182 (351)
T ss_dssp EEECC-CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC
T ss_pred eeecc-cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCC
Confidence 67777 9999999999999 9999999999999999986543
Q ss_pred -----------------------EEEEeecCCCCeeEEEEccCC----CEEEEecCc--EEEEECCCC------------
Q 036605 107 -----------------------VIREFKASEKPISSSAFLCEE----KIFALASSE--VRILSLENG------------ 145 (340)
Q Consensus 107 -----------------------~~~~~~~~~~~i~~l~~~~~~----~~l~~~~~~--i~i~d~~~~------------ 145 (340)
.+..+..|...|.+++|+|++ .+|++++.+ |++||+..+
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 262 (351)
T 3f3f_A 183 EKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTN 262 (351)
T ss_dssp CEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------
T ss_pred cEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccc
Confidence 134455788899999999998 788886554 999999874
Q ss_pred ----------------------------------ceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 146 ----------------------------------EEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 146 ----------------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
+.+..+.+|...|.+++|+|++++|++++. |+.|++|++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~~ 336 (351)
T 3f3f_A 263 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD-DGKVRLWKAT 336 (351)
T ss_dssp ----------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEET-TSCEEEEEEC
T ss_pred eeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecC-CCcEEEEecC
Confidence 456777889999999999999999999888 9999999993
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-25 Score=193.41 Aligned_cols=194 Identities=11% Similarity=0.015 Sum_probs=140.5
Q ss_pred EEEEEcCCCcEEEEEccCCeeEE-----EecCCCCCCeEEEEEec--------CCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKW-----KSTGRHPGGLAGLAFAK--------KGRSLHVVGTNGMASEMKSEMGEVIRE 110 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~-----~~~~~h~~~v~~v~~~~--------~~~~l~s~~~dg~i~~wd~~~~~~~~~ 110 (340)
+|++|+.|++|++||+.+++... .+.+ |.+.|++++|+| |+++|++++.|++|++||+.++..+..
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~g-H~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSG-HHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA 181 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTS-CSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCC-CCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence 89999999999999999886432 2455 999999999998 789999999999999999998888888
Q ss_pred eecCCCCeeEEEEccCCC-EEEEecCc--EEEEECCCCceeEEe-------------------------ecCCCCeEEEE
Q 036605 111 FKASEKPISSSAFLCEEK-IFALASSE--VRILSLENGEEVLKF-------------------------SDDVGPLQYVS 162 (340)
Q Consensus 111 ~~~~~~~i~~l~~~~~~~-~l~~~~~~--i~i~d~~~~~~~~~~-------------------------~~~~~~v~~~~ 162 (340)
+..|..++.+++|+|++. +|++++.+ |++||+.+++..... .+|...+.++.
T Consensus 182 ~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~ 261 (393)
T 4gq1_A 182 GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR 261 (393)
T ss_dssp EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE
T ss_pred ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee
Confidence 888999999999999875 67775544 999999887543221 35667788888
Q ss_pred EC-CCCCEEEEEEcCCCeEEEEEccCCCCCccCCcee---------------eecCCCeeeeeecCCCCCCCCEEEEEeC
Q 036605 163 AS-DGAKIIITAGYGEKHLQVWRCDISSKTVNKGPAL---------------SMRHSPVAIDCKNSPNGEDGTVILAVAE 226 (340)
Q Consensus 163 ~s-~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~l~~~s~ 226 (340)
|+ +++..|++++. |+.+++||+. .+.....+.. ........... +.+...++.++++|+.
T Consensus 262 ~~~~dg~~l~s~s~-d~~i~vwd~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 262 WIGSDGSGILAMCK-SGAWLRWNLF--ANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGA-CPHPRYMDYFATAHSQ 337 (393)
T ss_dssp EETTTTCEEEEECT-TSEEEEEEC---------------------CCSCSEEEECSSCCSSCC-EECSSCTTEEEEEETT
T ss_pred eecCCCCEEEEEeC-CCCEEEEECc--cCCCCceEeeecCccccEEEccccccccccCcceeE-EEccCCCCEEEEEECC
Confidence 85 89999999777 9999999984 2221111110 00000011111 0121346667888999
Q ss_pred CCcEEEEECCCCCccC
Q 036605 227 SGVAYSWDLKTVSQDE 242 (340)
Q Consensus 227 dg~i~vwd~~~~~~~~ 242 (340)
||.|++||+.+++...
T Consensus 338 Dg~V~lwd~~~~~~~~ 353 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNS 353 (393)
T ss_dssp TTEEEEEETTCTTCCE
T ss_pred CCEEEEEECCCCcEEE
Confidence 9999999998775543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=200.12 Aligned_cols=197 Identities=11% Similarity=0.002 Sum_probs=149.6
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-----------------------------eEEEec
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-----------------------------MKWKST 69 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-----------------------------~~~~~~ 69 (340)
.....|.+++|||||+ ++|+++.|++|+ |...++ ....+.
T Consensus 13 ~~~~~v~sv~~SpDG~---------~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~ 81 (588)
T 2j04_A 13 EFEDWKNNLTWARDGT---------LYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLN 81 (588)
T ss_dssp CCSSSSCCEEECTTSC---------EEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSST
T ss_pred HhhccEEEEEECCCCC---------EEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEee
Confidence 4568899999999999 999999999995 433332 111222
Q ss_pred CCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC-----CeeEEEEccCCCEEEEecCc--EEEEEC
Q 036605 70 GRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEK-----PISSSAFLCEEKIFALASSE--VRILSL 142 (340)
Q Consensus 70 ~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-----~i~~l~~~~~~~~l~~~~~~--i~i~d~ 142 (340)
..|...|.+++|+|+|..|++++.||.|++||... .+..+. |.. .+.+++|||||++|++++.+ |++||+
T Consensus 82 ~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 82 SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI 158 (588)
T ss_dssp TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence 13678899999999999999999999999999654 566666 655 49999999999999997655 999999
Q ss_pred CCCce-------eEEe----ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCC-ceeeecCCCeeeeee
Q 036605 143 ENGEE-------VLKF----SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKG-PALSMRHSPVAIDCK 210 (340)
Q Consensus 143 ~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~ 210 (340)
.++.. +..+ .+|...|.+++|+|+| +++++. |+.|++||+. .+..... ..+...|...+..+
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~-D~tVrlWd~~--~~~~~~~~~tL~~~h~~~V~sv- 232 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS-NNSVFSMTVS--ASSHQPVSRMIQNASRRKITDL- 232 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET-TCCEEEECCC--SSSSCCCEEEEECCCSSCCCCE-
T ss_pred CCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC-CCeEEEEECC--CCccccceeeecccccCcEEEE-
Confidence 98853 4665 6677899999999999 777677 9999999983 3332110 11211455556665
Q ss_pred cCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 211 NSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 211 ~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
.| + +..|++++ +|.|++||+.+.+.
T Consensus 233 -aF-s--g~~LASa~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 233 -KI-V--DYKVVLTC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp -EE-E--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred -EE-E--CCEEEEEe-CCeEEEEECCCCeE
Confidence 55 4 57888887 69999999987654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-24 Score=179.57 Aligned_cols=149 Identities=12% Similarity=0.164 Sum_probs=127.8
Q ss_pred eEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 036605 24 YSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-RHPGGLAGLAFAKKGRSLHVVGTNGMASEMKS 102 (340)
Q Consensus 24 v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~ 102 (340)
+++|+||+++ +||+|. |++|+|||+.+++.+..+.. .|...|++++|+|++++|++|+.||.|++||+
T Consensus 28 ~~~l~WS~~~----------~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~ 96 (318)
T 4ggc_A 28 LNLVDWSSGN----------VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 96 (318)
T ss_dssp CBCEEECTTS----------EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ceEEEECCCC----------EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeec
Confidence 5789999864 478775 89999999999998776643 38889999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCc-eeEEeecCCCCeEEEEECCCCCEEEEEEcCCCe
Q 036605 103 EMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGE-EVLKFSDDVGPLQYVSASDGAKIIITAGYGEKH 179 (340)
Q Consensus 103 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~ 179 (340)
.+++.+..+.+|...+.++. +++..+++++.+ +++|+..... .+..+.+|...+..+.+++++.++++++. |+.
T Consensus 97 ~~~~~~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~ 173 (318)
T 4ggc_A 97 QQQKRLRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN-DNL 173 (318)
T ss_dssp TTTEEEEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-TSC
T ss_pred CCceeEEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec-Ccc
Confidence 99999999999988777655 556788776555 8899987664 45677899999999999999999999888 999
Q ss_pred EEEEEcc
Q 036605 180 LQVWRCD 186 (340)
Q Consensus 180 i~iwd~~ 186 (340)
|++||++
T Consensus 174 i~iwd~~ 180 (318)
T 4ggc_A 174 VNVWPSA 180 (318)
T ss_dssp EEEEESS
T ss_pred eeEEECC
Confidence 9999984
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-24 Score=185.59 Aligned_cols=215 Identities=11% Similarity=0.081 Sum_probs=170.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEE-EEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLL-ALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
|||+.+++++..+. +| ..+.+++|+|+++ +| ++++.|+.|++||+.+++....+.. +. .+.++
T Consensus 16 v~d~~~~~~~~~~~----~~-~~~~~~~~s~dg~---------~l~~~~~~d~~i~v~d~~~~~~~~~~~~-~~-~v~~~ 79 (391)
T 1l0q_A 16 VIDVTSNKVTATIP----VG-SNPMGAVISPDGT---------KVYVANAHSNDVSIIDTATNNVIATVPA-GS-SPQGV 79 (391)
T ss_dssp EEETTTTEEEEEEE----CS-SSEEEEEECTTSS---------EEEEEEGGGTEEEEEETTTTEEEEEEEC-SS-SEEEE
T ss_pred EEECCCCeEEEEee----cC-CCcceEEECCCCC---------EEEEECCCCCeEEEEECCCCeEEEEEEC-CC-Cccce
Confidence 69999999988887 44 4589999999997 55 6778999999999999998888875 43 89999
Q ss_pred EEecCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEE-EEec--CcEEEEECCCCceeEEeecCC
Q 036605 80 AFAKKGRSLHVVG-TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIF-ALAS--SEVRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 80 ~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~~~--~~i~i~d~~~~~~~~~~~~~~ 155 (340)
+|+|+++.|+.++ .++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ +++. +.|++||+.+++.+..+..+
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~- 157 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG- 157 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-
Confidence 9999999886555 6699999999999988777654 468999999999987 4543 44999999999888877765
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEe---CCCcEEE
Q 036605 156 GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVA---ESGVAYS 232 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s---~dg~i~v 232 (340)
..+..++|+|++++++.++..++.|++||++ +++.... +.+......+ .+ ++++.++++++ .++.|++
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~--~~~~~~~----~~~~~~~~~~--~~-~~~g~~l~~~~~~~~~~~v~~ 228 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTV--TNSVIDT----VKVEAAPSGI--AV-NPEGTKAYVTNVDKYFNTVSM 228 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETT--TTEEEEE----EECSSEEEEE--EE-CTTSSEEEEEEECSSCCEEEE
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECC--CCeEEEE----EecCCCccce--EE-CCCCCEEEEEecCcCCCcEEE
Confidence 4569999999999986666668999999983 4332221 1233334443 45 78999998888 6899999
Q ss_pred EECCCCCccC
Q 036605 233 WDLKTVSQDE 242 (340)
Q Consensus 233 wd~~~~~~~~ 242 (340)
||+.+++.+.
T Consensus 229 ~d~~~~~~~~ 238 (391)
T 1l0q_A 229 IDTGTNKITA 238 (391)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCeEEE
Confidence 9998765443
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-24 Score=187.54 Aligned_cols=221 Identities=10% Similarity=0.039 Sum_probs=163.2
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEE-EEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLL-ALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
|||+.+++...... . ..+..++|.+++. ++ ++|+.|++|++||..+++.+..+. |...|.++
T Consensus 44 iw~~~~~~~~~~~~----~--~~~~~~~~~~~~~---------~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v 106 (355)
T 3vu4_A 44 IYNVHPVAHIMSQE----M--RHLSKVRMLHRTN---------YVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDL 106 (355)
T ss_dssp EEEETTEEEEEEEE----C--SCCCEEEECTTSS---------EEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEE
T ss_pred EEecCCcceeeeee----c--CCeEEEEEcCCCC---------EEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEE
Confidence 57777766554433 1 2477788888876 55 568888999999999999888876 66689999
Q ss_pred EEecCC-----------------------------------CEEEE--EeCCCcEEEEeCCCCe---------------E
Q 036605 80 AFAKKG-----------------------------------RSLHV--VGTNGMASEMKSEMGE---------------V 107 (340)
Q Consensus 80 ~~~~~~-----------------------------------~~l~s--~~~dg~i~~wd~~~~~---------------~ 107 (340)
+|+++. ..+++ ++.||.|++||+.++. +
T Consensus 107 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p 186 (355)
T 3vu4_A 107 FLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILG 186 (355)
T ss_dssp EECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------
T ss_pred EEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCc
Confidence 888652 23343 4678999999998765 1
Q ss_pred -EEEeecCCCCeeEEEEccCCCEEEEe--cCc-EEEEECCCCceeEEee-c-CCCCeEEEEECCCCCEEEEEEcCCCeEE
Q 036605 108 -IREFKASEKPISSSAFLCEEKIFALA--SSE-VRILSLENGEEVLKFS-D-DVGPLQYVSASDGAKIIITAGYGEKHLQ 181 (340)
Q Consensus 108 -~~~~~~~~~~i~~l~~~~~~~~l~~~--~~~-i~i~d~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~s~~~~d~~i~ 181 (340)
+..+.+|...|.+++|+|++.+|+++ ++. |++||+.+++.+..+. + |...|.+++|+|++++|++++. |+.|+
T Consensus 187 ~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~-d~~v~ 265 (355)
T 3vu4_A 187 KGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD-KWTLH 265 (355)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET-TCEEE
T ss_pred ccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC-CCEEE
Confidence 56788999999999999999999885 555 9999999999999998 5 9999999999999999999888 99999
Q ss_pred EEEccCCCCCccCCc----------------eeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 182 VWRCDISSKTVNKGP----------------ALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 182 iwd~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
+||++.........+ .+.+..........++| ++++.+|++++.||.+++|++..+..
T Consensus 266 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 266 VFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW-ISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp EEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE-SSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred EEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE-eCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 999953221111000 00001000000011245 88999999999999999999876543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-25 Score=183.64 Aligned_cols=155 Identities=11% Similarity=0.019 Sum_probs=117.3
Q ss_pred CCCCCeEEEEeec---cccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCC--CCCeEEEEEecCCCEE-----
Q 036605 19 EPVVSYSCLACGF---VGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRH--PGGLAGLAFAKKGRSL----- 88 (340)
Q Consensus 19 ~~~~~v~~l~~sp---~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~l----- 88 (340)
.|...++.++|+| ++. +|++|+.|++|+|||+.+|+.++++.+.| ...+.+++|+|+|..+
T Consensus 176 ~~~~~v~~l~fs~~~g~~~---------~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~ 246 (356)
T 2w18_A 176 LMPPEETILTFAEVQGMQE---------ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSH 246 (356)
T ss_dssp ECCCSSCEEEEEEEETSTT---------EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-
T ss_pred cCCCceeeEEeeccCCCCc---------eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEecc
Confidence 4444555555555 334 89999999999999999999999997622 3467888999999876
Q ss_pred -------EEEeCCCcEEEEeCCCCeEEEEe-----ecCCCCeeEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeecC
Q 036605 89 -------HVVGTNGMASEMKSEMGEVIREF-----KASEKPISSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSDD 154 (340)
Q Consensus 89 -------~s~~~dg~i~~wd~~~~~~~~~~-----~~~~~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~~ 154 (340)
++|+.|++|++||..+++.+..+ .+|...+.+ .+.++.+++++ +++|+|||+.+++.+..+.+|
T Consensus 247 ~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~ls--g~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH 324 (356)
T 2w18_A 247 PCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLE--GDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPV 324 (356)
T ss_dssp -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEE--EEEETTEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred CCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEc--cccCCCEEEEEcCCCcEEEEECCCCcEEEEecCC
Confidence 56788999999999999887654 244444333 33347788875 555999999999999999988
Q ss_pred CCCeE-EEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 155 VGPLQ-YVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 155 ~~~v~-~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
...+. .++|+|||++|++++. |++|+|||+
T Consensus 325 ~~~vvs~vafSPDG~~LaSGS~-D~TIklWd~ 355 (356)
T 2w18_A 325 SDQHWSFVKWSGTDSHLLAGQK-DGNIFVYHY 355 (356)
T ss_dssp --CCCCEEEECSSSSEEEEECT-TSCEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEEC-CCcEEEecC
Confidence 87655 6899999999999887 999999996
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-24 Score=189.40 Aligned_cols=221 Identities=12% Similarity=0.037 Sum_probs=174.1
Q ss_pred CccCCCCceeeeeeCC-CCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQP-DGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
+||+.+|+........ ..+|...|.+++|+|+++ ++++++.|+.|++||+.+++....+.. |...+.++
T Consensus 148 ~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~~s~~~d~~v~~~d~~~~~~~~~~~~-~~~~~~~~ 217 (433)
T 3bws_A 148 VLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE---------LWVSQMQANAVHVFDLKTLAYKATVDL-TGKWSKIL 217 (433)
T ss_dssp EEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE---------EEEEEGGGTEEEEEETTTCCEEEEEEC-SSSSEEEE
T ss_pred EEECCCCeEeeecCcccccccCCceeEEEEcCCCE---------EEEEECCCCEEEEEECCCceEEEEEcC-CCCCeeEE
Confidence 5899988877632210 016788999999999999 999999999999999999998888887 88999999
Q ss_pred EEecCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec----------CcEEEEECCCCcee
Q 036605 80 AFAKKGRSLHVVG-TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS----------SEVRILSLENGEEV 148 (340)
Q Consensus 80 ~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----------~~i~i~d~~~~~~~ 148 (340)
+|+|+++.+++++ .|+.|++||+.+++.+..+..+ ..+.+++|+|+++.+++++ +.|++||+.+++.+
T Consensus 218 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence 9999999886555 7899999999999988777654 4589999999999887754 35999999998766
Q ss_pred EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeC--
Q 036605 149 LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAE-- 226 (340)
Q Consensus 149 ~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~-- 226 (340)
..+ .|...+..++|+|++++++.++..++.|.+||+ .+++....+ .+...+..+ .+ ++++.++++++.
T Consensus 297 ~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~--~~~~~~~~~----~~~~~~~~~--~~-s~dg~~l~~~~~~~ 366 (433)
T 3bws_A 297 DTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL--KEKKVQKSI----PVFDKPNTI--AL-SPDGKYLYVSCRGP 366 (433)
T ss_dssp EEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEET--TTTEEEEEE----ECSSSEEEE--EE-CTTSSEEEEEECCC
T ss_pred eec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEEC--CCCcEEEEe----cCCCCCCeE--EE-cCCCCEEEEEecCC
Confidence 555 355688999999999888776666999999998 344332211 233333333 45 789998888876
Q ss_pred -------------CCcEEEEECCCCCccC
Q 036605 227 -------------SGVAYSWDLKTVSQDE 242 (340)
Q Consensus 227 -------------dg~i~vwd~~~~~~~~ 242 (340)
||.|++||+.+++.+.
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred CccccccccccccceEEEEEECCCCcEEE
Confidence 5799999998765544
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-23 Score=182.69 Aligned_cols=215 Identities=11% Similarity=0.066 Sum_probs=168.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEE-EEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLL-ALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
+||+.+++++..+. .+ ..+.+++|+|+++ +| ++++.++.|++||+.+++....+.. ...+.++
T Consensus 58 v~d~~~~~~~~~~~----~~-~~v~~~~~spdg~---------~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~ 121 (391)
T 1l0q_A 58 IIDTATNNVIATVP----AG-SSPQGVAVSPDGK---------QVYVTNMASSTLSVIDTTSNTVAGTVKT--GKSPLGL 121 (391)
T ss_dssp EEETTTTEEEEEEE----CS-SSEEEEEECTTSS---------EEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEE
T ss_pred EEECCCCeEEEEEE----CC-CCccceEECCCCC---------EEEEEECCCCEEEEEECCCCeEEEEEeC--CCCcceE
Confidence 58999999988887 33 3999999999997 66 4566779999999999998877774 4578999
Q ss_pred EEecCCCEE-EEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEE-Eec--CcEEEEECCCCceeEEeecCC
Q 036605 80 AFAKKGRSL-HVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFA-LAS--SEVRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 80 ~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~~--~~i~i~d~~~~~~~~~~~~~~ 155 (340)
+|+|+++.| ++++.|+.|++||+.+++.+..+..+ ..+.+++|+|+++.++ ++. +.|++||+.+++.+..+. +.
T Consensus 122 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~ 199 (391)
T 1l0q_A 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VE 199 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CS
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cC
Confidence 999999977 67778999999999999988887765 4569999999999884 443 349999999997776665 45
Q ss_pred CCeEEEEECCCCCEEEEEEc--CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEE-EEEeCCCcEEE
Q 036605 156 GPLQYVSASDGAKIIITAGY--GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVI-LAVAESGVAYS 232 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~s~dg~i~v 232 (340)
..+.+++|+|+++++++++. .++.|++||+ ..++....+. .+ .....+ .+ ++++.++ ++++.|+.|++
T Consensus 200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~--~~~~~~~~~~---~~-~~~~~~--~~-s~dg~~l~~s~~~d~~v~v 270 (391)
T 1l0q_A 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT--GTNKITARIP---VG-PDPAGI--AV-TPDGKKVYVALSFXNTVSV 270 (391)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCCEEEEEET--TTTEEEEEEE---CC-SSEEEE--EE-CTTSSEEEEEETTTTEEEE
T ss_pred CCccceEECCCCCEEEEEecCcCCCcEEEEEC--CCCeEEEEEe---cC-CCccEE--EE-ccCCCEEEEEcCCCCEEEE
Confidence 67899999999999999874 4899999998 3443322222 12 222233 44 7888877 66788999999
Q ss_pred EECCCCCccC
Q 036605 233 WDLKTVSQDE 242 (340)
Q Consensus 233 wd~~~~~~~~ 242 (340)
||+.+++.+.
T Consensus 271 ~d~~~~~~~~ 280 (391)
T 1l0q_A 271 IDTATNTITA 280 (391)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCcEEE
Confidence 9999876554
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=206.38 Aligned_cols=167 Identities=13% Similarity=0.087 Sum_probs=142.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|||..+++....+ .|...|++++|+| ++ +|++++.|++|++||+.+++.+..+. |.+.|++++
T Consensus 43 lw~~~~~~~~~~~-----~~~~~V~~l~fsp-g~---------~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~ 105 (902)
T 2oaj_A 43 IYGQQQVEVVIKL-----EDRSAIKEMRFVK-GI---------YLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSID 105 (902)
T ss_dssp EECSTTCEEEEEC-----SSCCCEEEEEEET-TT---------EEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEE
T ss_pred EEeCCCcEEEEEc-----CCCCCEEEEEEcC-CC---------EEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEE
Confidence 5887777665443 3678999999999 88 89999999999999999999888886 678999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEE-----------EEeecCCCCeeEEEEccCC-CEEEEecCc--EEEEECCCCc
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVI-----------REFKASEKPISSSAFLCEE-KIFALASSE--VRILSLENGE 146 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~-----------~~~~~~~~~i~~l~~~~~~-~~l~~~~~~--i~i~d~~~~~ 146 (340)
|+|++++|++|+.||.|++||+.+++.. ..+.+|..+|.+++|+|++ ..+++++.+ | +||+++++
T Consensus 106 ~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~ 184 (902)
T 2oaj_A 106 TDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE 184 (902)
T ss_dssp CCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc
Confidence 9999999999999999999999988753 1235688899999999964 566665444 8 99999998
Q ss_pred eeEEeecC------------------CCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 147 EVLKFSDD------------------VGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 147 ~~~~~~~~------------------~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
.+..+..| ...|.+++|+|+|.+|++++. |+.|++||++
T Consensus 185 ~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~-Dg~i~lWd~~ 241 (902)
T 2oaj_A 185 IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE-DNSLVFWDAN 241 (902)
T ss_dssp EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET-TCCEEEEETT
T ss_pred eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECC
Confidence 88888765 467999999999999999888 9999999994
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-22 Score=179.57 Aligned_cols=211 Identities=12% Similarity=0.042 Sum_probs=167.2
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEE-EEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLL-ALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
+||+.+++....+. .|...+.+++|+|+++ ++ ++++.++.|++||+.+++....+.. ...+.++
T Consensus 195 ~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~---------~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~ 259 (433)
T 3bws_A 195 VFDLKTLAYKATVD----LTGKWSKILLYDPIRD---------LVYCSNWISEDISVIDRKTKLEIRKTDK--IGLPRGL 259 (433)
T ss_dssp EEETTTCCEEEEEE----CSSSSEEEEEEETTTT---------EEEEEETTTTEEEEEETTTTEEEEECCC--CSEEEEE
T ss_pred EEECCCceEEEEEc----CCCCCeeEEEEcCCCC---------EEEEEecCCCcEEEEECCCCcEEEEecC--CCCceEE
Confidence 58999999888887 6788999999999997 56 5666899999999999988877764 4469999
Q ss_pred EEecCCCEEEEEe--------CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-e--cCcEEEEECCCCcee
Q 036605 80 AFAKKGRSLHVVG--------TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-A--SSEVRILSLENGEEV 148 (340)
Q Consensus 80 ~~~~~~~~l~s~~--------~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~--~~~i~i~d~~~~~~~ 148 (340)
+|+|+++.|++++ .|+.|++||+.+++.+..+. +...+.+++|+|+++.+++ + ++.|++||+.+++.+
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ 338 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE
Confidence 9999999999988 48899999999998776653 4457889999999986644 3 344999999999877
Q ss_pred EEeecCCCCeEEEEECCCCCEEEEEEcC--------------CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCC
Q 036605 149 LKFSDDVGPLQYVSASDGAKIIITAGYG--------------EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPN 214 (340)
Q Consensus 149 ~~~~~~~~~v~~~~~s~~~~~l~s~~~~--------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (340)
..+. +...+.+++|+|+++++++++.. ||.|++||+ .+++....+. ....+..+ .+
T Consensus 339 ~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~--~~~~~~~~~~----~~~~~~~~--~~- 408 (433)
T 3bws_A 339 KSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT--TTDTVKEFWE----AGNQPTGL--DV- 408 (433)
T ss_dssp EEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET--TTTEEEEEEE----CSSSEEEE--EE-
T ss_pred EEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC--CCCcEEEEec----CCCCCceE--EE-
Confidence 7765 66789999999999999887764 469999998 4444332222 22233333 44
Q ss_pred CCCCCEEEEEeC-CCcEEEEECCC
Q 036605 215 GEDGTVILAVAE-SGVAYSWDLKT 237 (340)
Q Consensus 215 ~~~~~~l~~~s~-dg~i~vwd~~~ 237 (340)
+|++.+|++++. |+.|++|++..
T Consensus 409 s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 409 SPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CTTSCEEEEEETTTTEEEEEEETT
T ss_pred cCCCCEEEEEECCCCeEEEEEecC
Confidence 899999988775 99999999763
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-22 Score=178.28 Aligned_cols=211 Identities=14% Similarity=0.137 Sum_probs=161.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCC---cEEEEEccCCeeEEEecCCCCCCeE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNG---DILAVDVLTGEMKWKSTGRHPGGLA 77 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~h~~~v~ 77 (340)
+||+..+ ....+. .|...+.+++|+|+|+ +|++++.++ .|++||+.+++.. .+.. |.+.+.
T Consensus 163 i~d~~g~-~~~~l~----~~~~~v~~~~~Spdg~---------~la~~s~~~~~~~i~~~d~~tg~~~-~l~~-~~~~~~ 226 (415)
T 2hqs_A 163 VSDYDGY-NQFVVH----RSPQPLMSPAWSPDGS---------KLAYVTFESGRSALVIQTLANGAVR-QVAS-FPRHNG 226 (415)
T ss_dssp EEETTSC-SCEEEE----EESSCEEEEEECTTSS---------EEEEEECTTSSCEEEEEETTTCCEE-EEEC-CSSCEE
T ss_pred EEcCCCC-CCEEEe----CCCCcceeeEEcCCCC---------EEEEEEecCCCcEEEEEECCCCcEE-Eeec-CCCccc
Confidence 4777643 344555 5778999999999999 899998875 9999999998765 4555 888999
Q ss_pred EEEEecCCCEEE-EEeCCCc--EEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC-----cEEEEECCCCceeE
Q 036605 78 GLAFAKKGRSLH-VVGTNGM--ASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS-----EVRILSLENGEEVL 149 (340)
Q Consensus 78 ~v~~~~~~~~l~-s~~~dg~--i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-----~i~i~d~~~~~~~~ 149 (340)
+++|+|||+.|+ +++.++. |++||+.+++. ..+..+...+.+++|+|+|+.|++++. .|++||+.+++ ..
T Consensus 227 ~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-~~ 304 (415)
T 2hqs_A 227 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQ 304 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CE
T ss_pred CEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-EE
Confidence 999999999877 6666654 99999998876 566777888999999999998876432 38888998875 34
Q ss_pred EeecCCCCeEEEEECCCCCEEEEEEcCC--CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCC
Q 036605 150 KFSDDVGPLQYVSASDGAKIIITAGYGE--KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAES 227 (340)
Q Consensus 150 ~~~~~~~~v~~~~~s~~~~~l~s~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d 227 (340)
.+..+...+..++|+|+|++|++++..+ ..|.+||+ .+++.. .+. .+. .+..+ .| +|+|.+|++++.+
T Consensus 305 ~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~--~~~~~~-~l~---~~~-~~~~~--~~-spdg~~l~~~s~~ 374 (415)
T 2hqs_A 305 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL--ATGGVQ-VLS---STF-LDETP--SL-APNGTMVIYSSSQ 374 (415)
T ss_dssp ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET--TTCCEE-ECC---CSS-SCEEE--EE-CTTSSEEEEEEEE
T ss_pred EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC--CCCCEE-Eec---CCC-CcCCe--EE-cCCCCEEEEEEcC
Confidence 5556677889999999999999887632 58999998 444331 111 222 33333 55 8999999998888
Q ss_pred C---cEEEEECCCCC
Q 036605 228 G---VAYSWDLKTVS 239 (340)
Q Consensus 228 g---~i~vwd~~~~~ 239 (340)
+ .|++||+....
T Consensus 375 ~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 375 GMGSVLNLVSTDGRF 389 (415)
T ss_dssp TTEEEEEEEETTSCC
T ss_pred CCccEEEEEECCCCc
Confidence 7 79999987543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=176.24 Aligned_cols=214 Identities=13% Similarity=0.066 Sum_probs=161.2
Q ss_pred CccC--CCCcee--eeeeCCCCCCCCCeEEEEeecc--------------ccccccccCceEEEEEcCC------CcEEE
Q 036605 1 IWST--NDGSLL--AEWKQPDGEPVVSYSCLACGFV--------------GKKRRKERGTLLLALGTSN------GDILA 56 (340)
Q Consensus 1 vwd~--~~g~~~--~~~~~~~~~~~~~v~~l~~sp~--------------~~~~~~~~~~~~l~~g~~d------g~i~i 56 (340)
|||+ .+|+.+ ..+. +|...+.++++++. +. .++.++.+ +.|++
T Consensus 97 lwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~---------~l~~~s~~~~~~~~~~i~i 163 (415)
T 2hqs_A 97 LVDTGGAPGTVLAQNSYK----VNKQWLRYAGHTASDEVFEKLTGIKGAFRT---------RIAYVVQTNGGQFPYELRV 163 (415)
T ss_dssp EEECSSSTTCEEEEEEEE----ECGGGHHHHHHHHHHHHHHHHHSSCCCTTC---------EEEEEEECSSSSCCEEEEE
T ss_pred EEeCCCCCCCEEeeeEEE----cChhHHHHHHHHHHHHHHHHHcCCCCcCCC---------EEEEEEecCCCCccceEEE
Confidence 6999 888877 3466 67778888888752 32 35554443 79999
Q ss_pred EEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEE-E
Q 036605 57 VDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG---MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFA-L 132 (340)
Q Consensus 57 ~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~ 132 (340)
||+..+ ....+.. |...+.+++|+|+|+.|++++.++ .|++||+.+++.. .+..+...+.+++|+|+|+.|+ +
T Consensus 164 ~d~~g~-~~~~l~~-~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~ 240 (415)
T 2hqs_A 164 SDYDGY-NQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFA 240 (415)
T ss_dssp EETTSC-SCEEEEE-ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEE
T ss_pred EcCCCC-CCEEEeC-CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEE
Confidence 999754 4556666 889999999999999999999875 9999999998875 4666777899999999999887 4
Q ss_pred ec----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCC--eEEEEEccCCCCCccCCceeeecCCCee
Q 036605 133 AS----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEK--HLQVWRCDISSKTVNKGPALSMRHSPVA 206 (340)
Q Consensus 133 ~~----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 206 (340)
++ ..|++||+.+++. ..+..|...+.+++|+|||++|++++..++ .|.+||+ .+++. ..+. .+...+
T Consensus 241 ~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~--~~~~~-~~l~---~~~~~~ 313 (415)
T 2hqs_A 241 LSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI--NGGAP-QRIT---WEGSQN 313 (415)
T ss_dssp ECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET--TSSCC-EECC---CSSSEE
T ss_pred EecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC--CCCCE-EEEe---cCCCcc
Confidence 42 2399999998865 667778889999999999999998776455 5666676 44432 1111 233334
Q ss_pred eeeecCCCCCCCCEEEEEeCC---CcEEEEECCCCCc
Q 036605 207 IDCKNSPNGEDGTVILAVAES---GVAYSWDLKTVSQ 240 (340)
Q Consensus 207 ~~~~~~~~~~~~~~l~~~s~d---g~i~vwd~~~~~~ 240 (340)
..+ .| +|+|.+|++++.+ +.|++||+.+++.
T Consensus 314 ~~~--~~-spdG~~l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 314 QDA--DV-SSDGKFMVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp EEE--EE-CTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred cCe--EE-CCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence 333 55 8999999988865 5899999987654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-21 Score=160.67 Aligned_cols=215 Identities=13% Similarity=0.123 Sum_probs=155.8
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC-CeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT-GEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~h~~~v~~v 79 (340)
+||+.+++..... .|...|.+++|+|+++ +|++++ ++.|++||+.+ ++....+...+...+.++
T Consensus 26 ~~d~~~~~~~~~~-----~~~~~v~~~~~spdg~---------~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 90 (297)
T 2ojh_A 26 IFNIRTRKMRVVW-----QTPELFEAPNWSPDGK---------YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDH 90 (297)
T ss_dssp EEETTTTEEEEEE-----EESSCCEEEEECTTSS---------EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred EEeCCCCceeeec-----cCCcceEeeEECCCCC---------EEEEEc-CCeEEEEeCCCCCCceEeccccccccccce
Confidence 5888888766443 3678999999999999 888876 88999999999 876655555234788999
Q ss_pred EEecCCCEEEEEeC--C--CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEE-Ee--cCcEEEEEC--CCCceeEE
Q 036605 80 AFAKKGRSLHVVGT--N--GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFA-LA--SSEVRILSL--ENGEEVLK 150 (340)
Q Consensus 80 ~~~~~~~~l~s~~~--d--g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~~--~~~i~i~d~--~~~~~~~~ 150 (340)
+|+|+++.|++++. + ..|..|+..++. ...+..+ ..+..++|+|+++.++ ++ ++.+.+|++ .++ ....
T Consensus 91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-~~~~ 167 (297)
T 2ojh_A 91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-VETR 167 (297)
T ss_dssp EECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-CEEE
T ss_pred EECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC-cceE
Confidence 99999999999883 3 455555656555 3344433 3488999999999886 33 444777775 444 4456
Q ss_pred eecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCC---
Q 036605 151 FSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAES--- 227 (340)
Q Consensus 151 ~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d--- 227 (340)
+..+...+.++.|+|++++|+.++..++.+.+|+++...+. ...+. .+...+..+ .| +|++.+|++++.+
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~-~~~~~---~~~~~~~~~--~~-s~dg~~l~~~~~~~~~ 240 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS-VERIT---DSAYGDWFP--HP-SPSGDKVVFVSYDADV 240 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-EEECC---CCSEEEEEE--EE-CTTSSEEEEEEEETTC
T ss_pred cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC-cEEEe---cCCcccCCe--EE-CCCCCEEEEEEcCCCC
Confidence 67778899999999999998887755899999998533322 22221 233333333 55 8999999888876
Q ss_pred --------CcEEEEECCCCCc
Q 036605 228 --------GVAYSWDLKTVSQ 240 (340)
Q Consensus 228 --------g~i~vwd~~~~~~ 240 (340)
+.|++||+.+++.
T Consensus 241 ~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 241 FDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CSCCSSEEEEEEEEETTSCSC
T ss_pred CcccccCceEEEEEecCCCCc
Confidence 5699999987543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-20 Score=159.91 Aligned_cols=218 Identities=14% Similarity=0.126 Sum_probs=163.5
Q ss_pred CccCCCCceeeeeeCCCCCCCC-CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCC----CC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVV-SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHP----GG 75 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~----~~ 75 (340)
+||+.+++.+..+... +.. .+.+++|+|+++ .+++++..++.|.+||+.+++....+...+. ..
T Consensus 15 ~~d~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~--------~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 83 (337)
T 1pby_B 15 VIDTEKMAVDKVITIA---DAGPTPMVPMVAPGGR--------IAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp EEETTTTEEEEEEECT---TCTTCCCCEEECTTSS--------EEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred EEECCCCcEEEEEEcC---CCCCCccceEEcCCCC--------EEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccc
Confidence 5899999988877622 222 478899999996 0456667789999999999988777664231 26
Q ss_pred eEEEEEecCCCEEEEEe------------CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCcEEEEECC
Q 036605 76 LAGLAFAKKGRSLHVVG------------TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSEVRILSLE 143 (340)
Q Consensus 76 v~~v~~~~~~~~l~s~~------------~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~ 143 (340)
+.+++|+|+++.|++++ .++.|.+||+.+++.+..+.. ...+.+++|+|++++++++++.|++||+.
T Consensus 84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~i~~~d~~ 162 (337)
T 1pby_B 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRDLHVMDPE 162 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSSEEEEETT
T ss_pred ccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeCCeEEEEECC
Confidence 77899999999999886 579999999999988777765 44678899999999888888889999998
Q ss_pred CCceeEEeecCC------------------------------------------------------------------CC
Q 036605 144 NGEEVLKFSDDV------------------------------------------------------------------GP 157 (340)
Q Consensus 144 ~~~~~~~~~~~~------------------------------------------------------------------~~ 157 (340)
+++.+..+..+. ..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 242 (337)
T 1pby_B 163 AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence 887654442211 23
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 158 LQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
+..++|+|++++++++ ++.|.+||+ .+++....+ .....+... .+ ++++.+|++++.++.|++||+.+
T Consensus 243 ~~~~~~s~dg~~l~~~---~~~v~~~d~--~~~~~~~~~--~~~~~~~~~----~~-s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 243 YFSTAVNPAKTRAFGA---YNVLESFDL--EKNASIKRV--PLPHSYYSV----NV-STDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEEEEECTTSSEEEEE---ESEEEEEET--TTTEEEEEE--ECSSCCCEE----EE-CTTSCEEEEESBSSEEEEEETTT
T ss_pred eeeEEECCCCCEEEEe---CCeEEEEEC--CCCcCccee--cCCCceeeE----EE-CCCCCEEEEEcCCCcEEEEECcC
Confidence 4468999999998886 689999998 444332222 223333333 33 89999999999999999999988
Q ss_pred CCccC
Q 036605 238 VSQDE 242 (340)
Q Consensus 238 ~~~~~ 242 (340)
++.+.
T Consensus 311 ~~~~~ 315 (337)
T 1pby_B 311 LEKKG 315 (337)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 76554
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-20 Score=159.49 Aligned_cols=218 Identities=11% Similarity=0.002 Sum_probs=165.6
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCC------
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPG------ 74 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~------ 74 (340)
+||+.+++....+.. ...+..++|+|+++ .+++++..++.|.+||..+++....+.. +..
T Consensus 73 ~~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~--------~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~ 138 (353)
T 3vgz_A 73 RLDPVTLEVTQAIHN-----DLKPFGATINNTTQ--------TLWFGNTVNSAVTAIDAKTGEVKGRLVL-DDRKRTEEV 138 (353)
T ss_dssp EECTTTCCEEEEEEE-----SSCCCSEEEETTTT--------EEEEEETTTTEEEEEETTTCCEEEEEES-CCCCCCSSC
T ss_pred EEcCCCCeEEEEEec-----CCCcceEEECCCCC--------EEEEEecCCCEEEEEeCCCCeeEEEEec-CCCcccccc
Confidence 478888888877762 24477899999996 0444556689999999999998877765 322
Q ss_pred ---CeEEEEEecCCCEEEEEe--CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCce
Q 036605 75 ---GLAGLAFAKKGRSLHVVG--TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEE 147 (340)
Q Consensus 75 ---~v~~v~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~ 147 (340)
.+.+++|+|+++.+++++ .++.|.+||+.+++.+..+..+...+.+++|+|+++.+++++. .|.+||+.+++.
T Consensus 139 ~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~ 218 (353)
T 3vgz_A 139 RPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI 218 (353)
T ss_dssp CCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE
T ss_pred CCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE
Confidence 278999999999888876 4789999999999988888755566889999999998887554 499999999988
Q ss_pred eEEeec----CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEE
Q 036605 148 VLKFSD----DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILA 223 (340)
Q Consensus 148 ~~~~~~----~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 223 (340)
+..+.. +...+..++|+|+++++++++..++.|.+||+ .+++....+. ... +... .+ ++++.++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~--~~~~~~~~~~--~~~-~~~~----~~-s~dg~~l~v 288 (353)
T 3vgz_A 219 LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT--RNGNILAKVA--APE-SLAV----LF-NPARNEAYV 288 (353)
T ss_dssp EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET--TTCCEEEEEE--CSS-CCCE----EE-ETTTTEEEE
T ss_pred EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC--CCCcEEEEEE--cCC-CceE----EE-CCCCCEEEE
Confidence 877654 45567889999999998887876799999998 4444333222 222 2222 33 788886655
Q ss_pred Ee-CCCcEEEEECCCCCccC
Q 036605 224 VA-ESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 224 ~s-~dg~i~vwd~~~~~~~~ 242 (340)
++ .++.|.+||..+++.+.
T Consensus 289 ~~~~~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 289 THRQAGKVSVIDAKSYKVVK 308 (353)
T ss_dssp EETTTTEEEEEETTTTEEEE
T ss_pred EECCCCeEEEEECCCCeEEE
Confidence 55 68999999998765544
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-20 Score=168.73 Aligned_cols=214 Identities=10% Similarity=0.020 Sum_probs=163.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEc--cCCeeEEEecCCCCCCeEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDV--LTGEMKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~--~~~~~~~~~~~~h~~~v~~ 78 (340)
|||..+++++..+. .++. +.+++|+|+++ +|++++.|+.|.+||+ .+++.+..+. +...+..
T Consensus 163 v~D~~t~~~~~~i~---~g~~--~~~v~~spdg~---------~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~ 226 (543)
T 1nir_A 163 LVDGDSKKIVKVID---TGYA--VHISRMSASGR---------YLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARS 226 (543)
T ss_dssp EEETTTCCEEEEEE---CSTT--EEEEEECTTSC---------EEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEE
T ss_pred EEECCCceEEEEEe---cCcc--cceEEECCCCC---------EEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcce
Confidence 58999999998887 2333 88999999999 9999999999999999 8888888887 4456899
Q ss_pred EEEec----CCCEEEEEeC-CCcEEEEeCCCCeEEEEeecC-----------CCCeeEEEEccCCCEEEEe---cCcEEE
Q 036605 79 LAFAK----KGRSLHVVGT-NGMASEMKSEMGEVIREFKAS-----------EKPISSSAFLCEEKIFALA---SSEVRI 139 (340)
Q Consensus 79 v~~~~----~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~-----------~~~i~~l~~~~~~~~l~~~---~~~i~i 139 (340)
++|+| +|++|++++. ++.|.+||..+++.+..+..+ ...+..+.++|++..+++. ++.|.+
T Consensus 227 va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~v 306 (543)
T 1nir_A 227 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL 306 (543)
T ss_dssp EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred EEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEE
Confidence 99999 9999999884 899999999999988877642 2268899999988776553 344999
Q ss_pred EECCCCceeE--EeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCcee-eecCCCeeeeeecCCCCC
Q 036605 140 LSLENGEEVL--KFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPAL-SMRHSPVAIDCKNSPNGE 216 (340)
Q Consensus 140 ~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 216 (340)
||+.+.+.+. .+ .+...+..+.|+|+|+++++++..++.|.+||+ .+++....+.. ...|+.....+ + +|
T Consensus 307 vd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~--~tg~l~~~i~~g~~ph~g~g~~~---~-~p 379 (543)
T 1nir_A 307 VNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDS--KDRRLSALVDVGKTPHPGRGANF---V-HP 379 (543)
T ss_dssp EECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEET--TTTEEEEEEECSSSBCCTTCEEE---E-ET
T ss_pred EEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEEC--CCCeEEEeeccCCCCCCCCCccc---C-CC
Confidence 9998876543 33 355678899999999999888877899999998 45544332221 01233222222 1 45
Q ss_pred C-CCEEEEEe-CCCcEEEEECCC
Q 036605 217 D-GTVILAVA-ESGVAYSWDLKT 237 (340)
Q Consensus 217 ~-~~~l~~~s-~dg~i~vwd~~~ 237 (340)
+ +..++++. .|+.|.+||+.+
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCccEEEeccCCCceEEEEEeCC
Confidence 5 55666665 589999999987
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=155.61 Aligned_cols=217 Identities=9% Similarity=0.021 Sum_probs=156.8
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcC-CCcEEEEEccCCee-EEEecCCCCCCeEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTS-NGDILAVDVLTGEM-KWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~-~~~~~~~h~~~v~~ 78 (340)
+||+.++++...+. .+...+ +++|+|+++ ++++++. ++.|.+||+.+++. ...+.. +.....+
T Consensus 24 ~~d~~~~~~~~~~~----~~~~~~-~~~~s~dg~---------~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~ 88 (331)
T 3u4y_A 24 FFSTDTLEILNQIT----LGYDFV-DTAITSDCS---------NVVVTSDFCQTLVQIETQLEPPKVVAIQE-GQSSMAD 88 (331)
T ss_dssp EEETTTCCEEEEEE----CCCCEE-EEEECSSSC---------EEEEEESTTCEEEEEECSSSSCEEEEEEE-CSSCCCC
T ss_pred EEeCcccceeeeEE----ccCCcc-eEEEcCCCC---------EEEEEeCCCCeEEEEECCCCceeEEeccc-CCCCccc
Confidence 58999999887776 334555 999999997 5665554 89999999999987 666665 5555555
Q ss_pred EEEecCCCEEEEEeCCC---cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEe---cCc-EEEEECCCCcee---
Q 036605 79 LAFAKKGRSLHVVGTNG---MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALA---SSE-VRILSLENGEEV--- 148 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~---~~~-i~i~d~~~~~~~--- 148 (340)
++|+|++++|+++..++ .|.+||+.+++.+..+..+ ....+++|+|+|++++++ ++. |.+|++.....+
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence 99999999999554443 8999999999988777654 456899999999866553 255 999998764333
Q ss_pred -EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccC-CceeeecCCCeeeeeecCCCCCCCCEEEEEe-
Q 036605 149 -LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNK-GPALSMRHSPVAIDCKNSPNGEDGTVILAVA- 225 (340)
Q Consensus 149 -~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s- 225 (340)
.........+..++|+|+|++++.++..++.|.+||+ .+++... ...+.....+..+. + +|+|.++++++
T Consensus 168 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~--~~~~~~~~~~~~~~~~~~~~~~----~-spdg~~l~v~~~ 240 (331)
T 3u4y_A 168 GQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILET--QNPENITLLNAVGTNNLPGTIV----V-SRDGSTVYVLTE 240 (331)
T ss_dssp EEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEEC--SSTTSCEEEEEEECSSCCCCEE----E-CTTSSEEEEECS
T ss_pred CCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEEC--CCCcccceeeeccCCCCCceEE----E-CCCCCEEEEEEc
Confidence 1222334567899999999988887776899999998 4444311 11222222223333 3 89999776665
Q ss_pred CCCcEEEEECCCCCc
Q 036605 226 ESGVAYSWDLKTVSQ 240 (340)
Q Consensus 226 ~dg~i~vwd~~~~~~ 240 (340)
.++.|.+||+.+++.
T Consensus 241 ~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 241 STVDVFNFNQLSGTL 255 (331)
T ss_dssp SEEEEEEEETTTTEE
T ss_pred CCCEEEEEECCCCce
Confidence 477899999987654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=166.17 Aligned_cols=156 Identities=12% Similarity=-0.053 Sum_probs=127.7
Q ss_pred CCCCeEEEEeeccccccccccCceEEE----EEcCCCcEEEEEccCC--------e---eEEEecCCCCCCeEEEEEecC
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLA----LGTSNGDILAVDVLTG--------E---MKWKSTGRHPGGLAGLAFAKK 84 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~----~g~~dg~i~i~d~~~~--------~---~~~~~~~~h~~~v~~v~~~~~ 84 (340)
+...|++++|+|+++ +|+ +|+.|+.|++||+.++ + ....+.+ |.+.|.+++|+|+
T Consensus 91 ~~~~v~~l~~spdg~---------~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~ 160 (434)
T 2oit_A 91 MKFPIHHLALSCDNL---------TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD-AGGMVIDMKWNPT 160 (434)
T ss_dssp CSSCEEEEEECTTSC---------EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS-GGGSEEEEEECSS
T ss_pred CCCcccEEEEcCCCC---------EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC-CCCceEEEEECCC
Confidence 456799999999998 888 7889999999998765 1 1344455 8999999999997
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecC-------
Q 036605 85 -GRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDD------- 154 (340)
Q Consensus 85 -~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~------- 154 (340)
+..|++++.||.|++||++++..+.....|...+.+++|+|+|++|++++.+ |++||++ ++....+..|
T Consensus 161 ~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 161 VPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDH 239 (434)
T ss_dssp CTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred CCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCC
Confidence 7899999999999999999987776677788899999999999999886554 9999998 5555555433
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCC------eEEEEEcc
Q 036605 155 VGPLQYVSASDGAKIIITAGYGEK------HLQVWRCD 186 (340)
Q Consensus 155 ~~~v~~~~~s~~~~~l~s~~~~d~------~i~iwd~~ 186 (340)
...+.++.|++++.++++.+..+| .+++|+++
T Consensus 240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence 237899999999888877665453 38999995
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-19 Score=154.25 Aligned_cols=219 Identities=12% Similarity=0.075 Sum_probs=150.9
Q ss_pred CccCCCCce-eeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCC---cEEEEEccCCeeEEEecCCCCCCe
Q 036605 1 IWSTNDGSL-LAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNG---DILAVDVLTGEMKWKSTGRHPGGL 76 (340)
Q Consensus 1 vwd~~~g~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~h~~~v 76 (340)
+||+.++++ ...+. .+..++.+++|+|+++ +|+++..++ .|.+||+.+++.+..+.. ....
T Consensus 66 ~~d~~~~~~~~~~~~----~~~~~~~~~~~s~dg~---------~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~ 130 (331)
T 3u4y_A 66 QIETQLEPPKVVAIQ----EGQSSMADVDITPDDQ---------FAVTVTGLNHPFNMQSYSFLKNKFISTIPI--PYDA 130 (331)
T ss_dssp EEECSSSSCEEEEEE----ECSSCCCCEEECTTSS---------EEEECCCSSSSCEEEEEETTTTEEEEEEEC--CTTE
T ss_pred EEECCCCceeEEecc----cCCCCccceEECCCCC---------EEEEecCCCCcccEEEEECCCCCeEEEEEC--CCCc
Confidence 478888887 55555 4555665699999998 788655553 899999999988877764 4467
Q ss_pred EEEEEecCCCEEEEEe-CCCc-EEEEeCCCCeEE----EEeecCCCCeeEEEEccCCCEEEEe---cCcEEEEECCCCce
Q 036605 77 AGLAFAKKGRSLHVVG-TNGM-ASEMKSEMGEVI----REFKASEKPISSSAFLCEEKIFALA---SSEVRILSLENGEE 147 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~-~dg~-i~~wd~~~~~~~----~~~~~~~~~i~~l~~~~~~~~l~~~---~~~i~i~d~~~~~~ 147 (340)
.+++|+|+|++|++++ .++. |.+|++.....+ .........+..++|+|+|++++++ ++.|.+||+.+++.
T Consensus 131 ~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 131 VGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred cceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 9999999998666654 5578 999998754322 1112334567899999999976553 34499999999887
Q ss_pred ---eEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeec---CCCeeee-eecCCCCCCCCE
Q 036605 148 ---VLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMR---HSPVAID-CKNSPNGEDGTV 220 (340)
Q Consensus 148 ---~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~ 220 (340)
+..+..+ ..+..++|+|+|++++++...++.|.+||+ .+++......+... +...... -...+ +|++.+
T Consensus 211 ~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~ 286 (331)
T 3u4y_A 211 ITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQ--LSGTLSFVKSFGHGLLIDPRPLFGANQMAL-NKTETK 286 (331)
T ss_dssp CEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEET--TTTEEEEEEEEECCCCCCCGGGTTCCCEEE-CTTSSE
T ss_pred cceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEEC--CCCceeeecccccccccCCCCcccccceEE-CCCCCE
Confidence 6666643 567889999999988877766889999998 44433111110000 0111000 00033 899998
Q ss_pred EEEEeC-CCcEEEEECCCC
Q 036605 221 ILAVAE-SGVAYSWDLKTV 238 (340)
Q Consensus 221 l~~~s~-dg~i~vwd~~~~ 238 (340)
|++++. ++.|.+||+...
T Consensus 287 l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 287 LFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEEETTTTEEEEEETTSC
T ss_pred EEEecCCCCcEEEEEecCC
Confidence 866555 569999998753
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-19 Score=162.17 Aligned_cols=196 Identities=13% Similarity=0.020 Sum_probs=155.0
Q ss_pred EeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC--CCC
Q 036605 28 ACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKS--EMG 105 (340)
Q Consensus 28 ~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~--~~~ 105 (340)
+|+|+++ ++++++.+++|.+||..+++.+..+..++. +..++|+|+|++|++++.|+.|.+||+ .++
T Consensus 144 ~~~p~~~---------~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~ 212 (543)
T 1nir_A 144 DLDLPNL---------FSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP 212 (543)
T ss_dssp CCCGGGE---------EEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred ccCCCCE---------EEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC
Confidence 4889888 899999999999999999999988885243 899999999999999999999999999 888
Q ss_pred eEEEEeecCCCCeeEEEEcc----CCCEEEEec---CcEEEEECCCCceeEEeecC----------C-CCeEEEEECCCC
Q 036605 106 EVIREFKASEKPISSSAFLC----EEKIFALAS---SEVRILSLENGEEVLKFSDD----------V-GPLQYVSASDGA 167 (340)
Q Consensus 106 ~~~~~~~~~~~~i~~l~~~~----~~~~l~~~~---~~i~i~d~~~~~~~~~~~~~----------~-~~v~~~~~s~~~ 167 (340)
+.+..+.. ...+..++|+| +|+++++++ +.|.+||..+++.+..+..+ . ..+..+.++|++
T Consensus 213 ~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~ 291 (543)
T 1nir_A 213 TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 291 (543)
T ss_dssp EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC
Confidence 88888874 45679999999 999998754 55999999999988877542 2 368899999998
Q ss_pred CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEe-CCCcEEEEECCCCCccC
Q 036605 168 KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVA-ESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s-~dg~i~vwd~~~~~~~~ 242 (340)
..++++...++.|.+||+. ..+...... +.+.....++ .| +|++.++++++ .++.|.+||..+++.+.
T Consensus 292 ~~~~vs~~~~g~i~vvd~~--~~~~l~~~~--i~~~~~~~~~--~~-spdg~~l~va~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 292 PEFIVNVKETGKVLLVNYK--DIDNLTVTS--IGAAPFLHDG--GW-DSSHRYFMTAANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp SEEEEEETTTTEEEEEECT--TSSSCEEEE--EECCSSCCCE--EE-CTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCeEEEEEec--CCCcceeEE--eccCcCccCc--eE-CCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence 8888777779999999983 333222111 2222223333 34 89999876554 58899999999876554
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=165.69 Aligned_cols=202 Identities=11% Similarity=-0.019 Sum_probs=146.0
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC----------eeEEEec----CCCCCCeEEEEEecCC
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG----------EMKWKST----GRHPGGLAGLAFAKKG 85 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~----------~~~~~~~----~~h~~~v~~v~~~~~~ 85 (340)
....++++++++++. ++++|+.+| +++|+.... ....... -.+.+.|.+++|+|++
T Consensus 35 ~~~~~n~lavs~~~~---------~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 104 (434)
T 2oit_A 35 PKERSSLLAVSNKYG---------LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN 104 (434)
T ss_dssp CCSCCBCEEEETTTT---------EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS
T ss_pred CCCCccEEEEecCCC---------EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC
Confidence 345689999999998 899998888 889875321 0111110 0156789999999999
Q ss_pred CEEE----EEeCCCcEEEEeCCCC--------e---EEEEeecCCCCeeEEEEccC-CCEEEEec--CcEEEEECCCCce
Q 036605 86 RSLH----VVGTNGMASEMKSEMG--------E---VIREFKASEKPISSSAFLCE-EKIFALAS--SEVRILSLENGEE 147 (340)
Q Consensus 86 ~~l~----s~~~dg~i~~wd~~~~--------~---~~~~~~~~~~~i~~l~~~~~-~~~l~~~~--~~i~i~d~~~~~~ 147 (340)
++|+ +++.|+.|++||+.++ + .+..+.+|...|.+++|+|+ +.+|++++ +.|++||++++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 7888999999998765 2 23456678889999999998 78888754 4499999999877
Q ss_pred eEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeee----cCCCeeeeeecCCCCCCCCEEEE
Q 036605 148 VLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSM----RHSPVAIDCKNSPNGEDGTVILA 223 (340)
Q Consensus 148 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~ 223 (340)
+....+|...|.+++|+|+|++|++++. |+.|++||++ +.....+.... .|...+..+ .| .+++.++++
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~-dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~v~~v--~w-~~~~~~l~~ 257 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQ-NGTVVQYLPT---LQEKKVIPCPPFYESDHPVRVLDV--LW-IGTYVFAIV 257 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEET-TSCEEEECTT---CCEEEEECCCTTCCTTSCEEEEEE--EE-EETTEEEEE
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcC-CCcEEEEccC---CcccccccCCcccCCCCceeEEEE--EE-ecCceEEEE
Confidence 7677778899999999999999999887 9999999984 11111111000 122244444 56 566666644
Q ss_pred -EeCCCc------EEEEECCCC
Q 036605 224 -VAESGV------AYSWDLKTV 238 (340)
Q Consensus 224 -~s~dg~------i~vwd~~~~ 238 (340)
.+.||. +++|++...
T Consensus 258 ~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 258 YAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEETTCCSSSCCEEEEEECCCT
T ss_pred EccCCCccCCCCceEEEEeccC
Confidence 344443 899999764
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=155.79 Aligned_cols=216 Identities=9% Similarity=0.080 Sum_probs=158.1
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEE-EEEcCCCcEEEEEccCCeeEEEecCCC-----CC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLL-ALGTSNGDILAVDVLTGEMKWKSTGRH-----PG 74 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~h-----~~ 74 (340)
+||+.+++.+..+.. +....+..++|+|+++ ++ +++..++.|.+||+.+++....+...+ ..
T Consensus 25 ~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~---------~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~ 92 (349)
T 1jmx_B 25 VVDVASDTVYKSCVM---PDKFGPGTAMMAPDNR---------TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGR 92 (349)
T ss_dssp EEETTTTEEEEEEEC---SSCCSSCEEEECTTSS---------EEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEE
T ss_pred EEECCCCcEEEEEec---CCCCCCceeEECCCCC---------EEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccc
Confidence 589999998887762 2223578899999996 44 556678999999999998877765313 22
Q ss_pred CeEEEEEecCCCEEEEEeCC------------CcEEEEeCCCCeE---EEEeecCCCCeeEEEEccCCCEEEEecCcEEE
Q 036605 75 GLAGLAFAKKGRSLHVVGTN------------GMASEMKSEMGEV---IREFKASEKPISSSAFLCEEKIFALASSEVRI 139 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~d------------g~i~~wd~~~~~~---~~~~~~~~~~i~~l~~~~~~~~l~~~~~~i~i 139 (340)
.+.+++|+|+|++|++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+++ +++++.+|++
T Consensus 93 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~~i~~ 170 (349)
T 1jmx_B 93 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGPDIYK 170 (349)
T ss_dssp CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESSSEEE
T ss_pred cccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccCcEEE
Confidence 37899999999999998865 8999999988543 23333 334688999999999 6667778999
Q ss_pred EECCCCceeEEeecCC----------------------------------------------------------------
Q 036605 140 LSLENGEEVLKFSDDV---------------------------------------------------------------- 155 (340)
Q Consensus 140 ~d~~~~~~~~~~~~~~---------------------------------------------------------------- 155 (340)
||+.+++.+..+..+.
T Consensus 171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
T 1jmx_B 171 MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 250 (349)
T ss_dssp ECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred EeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc
Confidence 9999887766554321
Q ss_pred ----CCeEEEEECC-CCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcE
Q 036605 156 ----GPLQYVSASD-GAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVA 230 (340)
Q Consensus 156 ----~~v~~~~~s~-~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i 230 (340)
..+..++|+| ++++++++ ++.|.+||+ .+++....+ ...+.+..+. + ++++.+|++++.++.|
T Consensus 251 ~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~--~~~~~~~~~--~~~~~~~~~~----~-s~dg~~l~~~~~~~~v 318 (349)
T 1jmx_B 251 ADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDL--KQRKLIKAA--NLDHTYYCVA----F-DKKGDKLYLGGTFNDL 318 (349)
T ss_dssp EECSSCEEEEEECSSCTTEEEEE---ESEEEEEET--TTTEEEEEE--ECSSCCCEEE----E-CSSSSCEEEESBSSEE
T ss_pred ccCCCcceeeEecCCCCCEEEEE---cCeEEEEEC--ccCeEEEEE--cCCCCccceE----E-CCCCCEEEEecCCCeE
Confidence 1345677789 99998886 689999998 444332222 2233333333 3 8899888888889999
Q ss_pred EEEECCCCCccC
Q 036605 231 YSWDLKTVSQDE 242 (340)
Q Consensus 231 ~vwd~~~~~~~~ 242 (340)
++||..+++.+.
T Consensus 319 ~v~d~~~~~~~~ 330 (349)
T 1jmx_B 319 AVFNPDTLEKVK 330 (349)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEeccccceee
Confidence 999998766544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-19 Score=151.81 Aligned_cols=202 Identities=13% Similarity=0.120 Sum_probs=141.0
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCC-CcEEEEEcc--CCe--eEEEecCCCCCCeEEEEEecCCCEEEEEeC-
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSN-GDILAVDVL--TGE--MKWKSTGRHPGGLAGLAFAKKGRSLHVVGT- 93 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d-g~i~i~d~~--~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~- 93 (340)
+...+.+++|+|+++ +|++++.+ +.|.+|++. +++ .+..+.. + +.+..++|+|+++.|++++.
T Consensus 36 ~~~~~~~~~~spdg~---------~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~ 104 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKR---------YLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-P-GSLTHISTDHQGQFVFVGSYN 104 (343)
T ss_dssp CSSCCCCEEECTTSS---------EEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-S-SCCSEEEECTTSSEEEEEETT
T ss_pred cCCCCceEEECCCCC---------EEEEeecCCCeEEEEEecCCCCceeecccccc-C-CCCcEEEEcCCCCEEEEEecC
Confidence 567888999999998 78887776 999999997 555 3334443 3 37899999999998877765
Q ss_pred CCcEEEEeCC---CCeEEEEeecCCCCeeEEEEccCCCEEEEec---CcEEEEECCC-CceeE----Eeec-CCCCeEEE
Q 036605 94 NGMASEMKSE---MGEVIREFKASEKPISSSAFLCEEKIFALAS---SEVRILSLEN-GEEVL----KFSD-DVGPLQYV 161 (340)
Q Consensus 94 dg~i~~wd~~---~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~~-~~~~~----~~~~-~~~~v~~~ 161 (340)
++.|.+||+. ..+....+.. ...+.+++|+|+++++++++ +.|++||+.+ ++... .+.. ....+..+
T Consensus 105 ~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (343)
T 1ri6_A 105 AGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 183 (343)
T ss_dssp TTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred CCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceE
Confidence 7889999994 3344444443 34588999999999887654 4599999987 54332 2333 23578889
Q ss_pred EECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceee---ecCC--CeeeeeecCCCCCCCCEEEE-EeCCCcEEEEEC
Q 036605 162 SASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALS---MRHS--PVAIDCKNSPNGEDGTVILA-VAESGVAYSWDL 235 (340)
Q Consensus 162 ~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~l~~-~s~dg~i~vwd~ 235 (340)
+|+|+++++++++..++.|.+|+++...+......... ..+. .....+ .| ++++.+|++ ...++.|.+|++
T Consensus 184 ~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i--~~-s~dg~~l~v~~~~~~~i~v~d~ 260 (343)
T 1ri6_A 184 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI--HI-TPDGRHLYACDRTASLITVFSV 260 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE--EE-CTTSSEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce--EE-CCCCCEEEEEecCCCEEEEEEE
Confidence 99999998887776699999999853233221111110 0111 112122 44 789987774 457899999999
Q ss_pred C
Q 036605 236 K 236 (340)
Q Consensus 236 ~ 236 (340)
.
T Consensus 261 ~ 261 (343)
T 1ri6_A 261 S 261 (343)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-18 Score=148.89 Aligned_cols=215 Identities=14% Similarity=0.194 Sum_probs=144.2
Q ss_pred CccCC--CCcee--eeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEc-CCCcEEEEEcc---CCeeEEEecCCC
Q 036605 1 IWSTN--DGSLL--AEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGT-SNGDILAVDVL---TGEMKWKSTGRH 72 (340)
Q Consensus 1 vwd~~--~g~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~-~dg~i~i~d~~---~~~~~~~~~~~h 72 (340)
+|++. +|++. ..+. .+ ..+.+++|+|+++ +|++++ .++.|.+||+. .++....+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~s~dg~---------~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-- 127 (343)
T 1ri6_A 64 AYRIAPDDGALTFAAESA----LP-GSLTHISTDHQGQ---------FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-- 127 (343)
T ss_dssp EEEECTTTCCEEEEEEEE----CS-SCCSEEEECTTSS---------EEEEEETTTTEEEEEEEETTEEEEEEEEECC--
T ss_pred EEEecCCCCceeeccccc----cC-CCCcEEEEcCCCC---------EEEEEecCCCeEEEEECCCCccccccccccC--
Confidence 46665 55543 3343 22 3788999999997 666554 58899999994 3344445543
Q ss_pred CCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCC-CeEEE----Eeec-CCCCeeEEEEccCCCEEEEec---CcEEEEEC
Q 036605 73 PGGLAGLAFAKKGRSLHVVG-TNGMASEMKSEM-GEVIR----EFKA-SEKPISSSAFLCEEKIFALAS---SEVRILSL 142 (340)
Q Consensus 73 ~~~v~~v~~~~~~~~l~s~~-~dg~i~~wd~~~-~~~~~----~~~~-~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~ 142 (340)
...+.+++|+|+++.|++++ .++.|.+||+.+ ++... .+.. ....+..++|+|+++++++++ +.|.+||+
T Consensus 128 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~ 207 (343)
T 1ri6_A 128 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL 207 (343)
T ss_dssp CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 34689999999999888887 889999999987 65432 2222 234678899999999775533 44999999
Q ss_pred CC--Cce--eEEee---cC---CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecC
Q 036605 143 EN--GEE--VLKFS---DD---VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNS 212 (340)
Q Consensus 143 ~~--~~~--~~~~~---~~---~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
.. ++. ...+. .. ...+..++|+|++++|+++...++.|.+||++...+.......+.....+..+ .
T Consensus 208 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----~ 283 (343)
T 1ri6_A 208 KDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGF----N 283 (343)
T ss_dssp SCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCE----E
T ss_pred cCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceE----E
Confidence 53 432 22222 11 23566899999999998777669999999995222221111111112222222 3
Q ss_pred CCCCCCCEEEEEe-CCCcEEEEECC
Q 036605 213 PNGEDGTVILAVA-ESGVAYSWDLK 236 (340)
Q Consensus 213 ~~~~~~~~l~~~s-~dg~i~vwd~~ 236 (340)
+ ++++.+|++++ .++.|.+|++.
T Consensus 284 ~-s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 284 V-DHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp E-CTTSSEEEEECTTTCEEEEEEEE
T ss_pred E-CCCCCEEEEecCCCCeEEEEEEc
Confidence 4 89999888887 57999999654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-18 Score=147.58 Aligned_cols=218 Identities=12% Similarity=0.075 Sum_probs=145.0
Q ss_pred ccCCCCceee-eeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcC--CCcEEEEEccCCe--eEEEecCCCCCCe
Q 036605 2 WSTNDGSLLA-EWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTS--NGDILAVDVLTGE--MKWKSTGRHPGGL 76 (340)
Q Consensus 2 wd~~~g~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~--dg~i~i~d~~~~~--~~~~~~~~h~~~v 76 (340)
||..+|++.. ... .+...+..++|+|+++ +++++.. ++.|.+|++.+++ .+..+.. +...+
T Consensus 23 ~d~~tg~~~~~~~~----~~~~~p~~~a~spdg~---------l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~p 88 (347)
T 3hfq_A 23 LDTTAKTLTNDGLL----AATQNPTYLALSAKDC---------LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-PGTPP 88 (347)
T ss_dssp EETTTTEEEEEEEE----EECSCCCCEEECTTCE---------EEEEEEETTEEEEEEEEEETTEEEEEEEEEE-ESCCC
T ss_pred EcCCCCeEEEeeee----eccCCcceEEEccCCe---------EEEEEecCCCceEEEEEecCCcEEEeeeeec-CCCCC
Confidence 4566676543 222 2346677899999998 6666543 7899999998776 3334333 66788
Q ss_pred EEEEEecCCCEEEEEe-CCCcEEEEeCC-CCe--EEEEeecC---------CCCeeEEEEccCCCEEEEe--cCcEEEEE
Q 036605 77 AGLAFAKKGRSLHVVG-TNGMASEMKSE-MGE--VIREFKAS---------EKPISSSAFLCEEKIFALA--SSEVRILS 141 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~-~dg~i~~wd~~-~~~--~~~~~~~~---------~~~i~~l~~~~~~~~l~~~--~~~i~i~d 141 (340)
..++|+|+|++|++++ .++.|.+|++. ++. .+..+... ...+.+++|+|+|+++++. ++.|++|+
T Consensus 89 ~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 89 AYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp SEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence 9999999999999888 67999999995 333 23333221 1247889999999955543 33499999
Q ss_pred CC-CCcee--EEeecCC-CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCC------Ceeeeeec
Q 036605 142 LE-NGEEV--LKFSDDV-GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHS------PVAIDCKN 211 (340)
Q Consensus 142 ~~-~~~~~--~~~~~~~-~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 211 (340)
+. +++.. ..+..+. ..+..++|+|+|+++++++..++.|.+|+++...++......+. ..+ .....+
T Consensus 169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i-- 245 (347)
T 3hfq_A 169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK-TIPADYTAHNGAAAI-- 245 (347)
T ss_dssp ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SSCTTCCSCCEEEEE--
T ss_pred ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee-ecCCCCCCCCcceeE--
Confidence 98 45432 2223322 36788999999998888777789999999963233221111111 111 122223
Q ss_pred CCCCCCCCEE-EEEeCCCcEEEEECCC
Q 036605 212 SPNGEDGTVI-LAVAESGVAYSWDLKT 237 (340)
Q Consensus 212 ~~~~~~~~~l-~~~s~dg~i~vwd~~~ 237 (340)
.+ +|+|.+| ++...++.|.+|++..
T Consensus 246 ~~-spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 246 RL-SHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EE-CTTSCEEEEEEETTTEEEEEEECG
T ss_pred EE-CCCCCEEEEEeCCCCEEEEEEECC
Confidence 44 8999987 4555689999999863
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-18 Score=146.24 Aligned_cols=207 Identities=13% Similarity=0.073 Sum_probs=154.6
Q ss_pred CccCCCCceeeeeeCCCCCC-----CCCeEEEEeeccccccccccCceEEEEEc--CCCcEEEEEccCCeeEEEecCCCC
Q 036605 1 IWSTNDGSLLAEWKQPDGEP-----VVSYSCLACGFVGKKRRKERGTLLLALGT--SNGDILAVDVLTGEMKWKSTGRHP 73 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~-----~~~v~~l~~sp~~~~~~~~~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~h~ 73 (340)
+||+.+++....+....... ...+.+++|+|+++ +++++. .++.|.+||..+++....+.. +.
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---------~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~ 184 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN---------TVYISGIGKESVIWVVDGGNIKLKTAIQN-TG 184 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT---------EEEEEEESSSCEEEEEETTTTEEEEEECC-CC
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC---------EEEEEecCCCceEEEEcCCCCceEEEecC-CC
Confidence 58888998887776320000 01278999999997 666655 578999999999998888875 55
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeec----CCCCeeEEEEccCCCEEEEec---CcEEEEECCCCc
Q 036605 74 GGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKA----SEKPISSSAFLCEEKIFALAS---SEVRILSLENGE 146 (340)
Q Consensus 74 ~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~~~~ 146 (340)
..+.+++|+|+++.|++++.++.|.+||+.+++.+..+.. +...+..++|+|+++.+++++ +.|.+||+.+++
T Consensus 185 ~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 185 KMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 5688999999999999999999999999999998877664 344577899999999876643 449999999998
Q ss_pred eeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeC
Q 036605 147 EVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAE 226 (340)
Q Consensus 147 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~ 226 (340)
.+..+.... ...++|+|++++++++...++.|.+||+ .+++....+. ... ....+ .+ ++++.+|+++..
T Consensus 265 ~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~--~~~~~~~~~~--~~~--~~~~~--~~-s~dg~~l~v~~~ 333 (353)
T 3vgz_A 265 ILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDA--KSYKVVKTFD--TPT--HPNSL--AL-SADGKTLYVSVK 333 (353)
T ss_dssp EEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEET--TTTEEEEEEE--CCS--EEEEE--EE-CTTSCEEEEEEE
T ss_pred EEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEEC--CCCeEEEEEe--cCC--CCCeE--EE-cCCCCEEEEEEc
Confidence 887776433 2569999999988887766999999998 4444332221 122 23333 44 788887777766
Q ss_pred CC
Q 036605 227 SG 228 (340)
Q Consensus 227 dg 228 (340)
++
T Consensus 334 ~~ 335 (353)
T 3vgz_A 334 QK 335 (353)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-17 Score=144.03 Aligned_cols=217 Identities=11% Similarity=0.073 Sum_probs=141.0
Q ss_pred CccCCCCcee--eeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEc-CCCcEEEEEcc-CCe--eEEEecCC---
Q 036605 1 IWSTNDGSLL--AEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGT-SNGDILAVDVL-TGE--MKWKSTGR--- 71 (340)
Q Consensus 1 vwd~~~g~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~-~dg~i~i~d~~-~~~--~~~~~~~~--- 71 (340)
+||+.+|... ..+. .+...+..++|+|+++ +|++++ .++.|.+|++. ++. .+..+...
T Consensus 67 ~~~~~~g~~~~~~~~~----~~~~~p~~~a~spdg~---------~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~ 133 (347)
T 3hfq_A 67 AWQIDGQTAHKLNTVV----APGTPPAYVAVDEARQ---------LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHG 133 (347)
T ss_dssp EEEEETTEEEEEEEEE----EESCCCSEEEEETTTT---------EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCC
T ss_pred EEEecCCcEEEeeeee----cCCCCCEEEEECCCCC---------EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCC
Confidence 4777666533 2322 3456788999999998 777776 78999999995 333 23333210
Q ss_pred -----CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC-CCeEEE--EeecC-CCCeeEEEEccCCCEEEEe---cCcEEE
Q 036605 72 -----HPGGLAGLAFAKKGRSLHVVGTNGMASEMKSE-MGEVIR--EFKAS-EKPISSSAFLCEEKIFALA---SSEVRI 139 (340)
Q Consensus 72 -----h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~--~~~~~-~~~i~~l~~~~~~~~l~~~---~~~i~i 139 (340)
+...+.+++|+|+|+.+++...++.|.+|++. +++... .+... ...+..++|+|+|++++++ ++.|.+
T Consensus 134 p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 213 (347)
T 3hfq_A 134 PRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIAS 213 (347)
T ss_dssp SSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEE
Confidence 12248899999999955555567899999998 554332 22222 2357889999999977663 334999
Q ss_pred EECCC--Cce--eEEeecCC------CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeee-cCCCeeee
Q 036605 140 LSLEN--GEE--VLKFSDDV------GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSM-RHSPVAID 208 (340)
Q Consensus 140 ~d~~~--~~~--~~~~~~~~------~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~ 208 (340)
|++.. ++. +..+.... ..+..++|+|+|++|+++...++.|.+|+++. .+.......+.. ...+..+
T Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~-~g~~~~~~~~~~~~~~~~~~- 291 (347)
T 3hfq_A 214 LKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA-DGHLTLIQQISTEGDFPRDF- 291 (347)
T ss_dssp EEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG-GGCEEEEEEEECSSSCCCEE-
T ss_pred EEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC-CCcEEEeEEEecCCCCcCeE-
Confidence 98874 432 22333222 34788999999998877666689999999842 221111111111 1122333
Q ss_pred eecCCCCCCCCEEEEEeCC-CcEEEEECC
Q 036605 209 CKNSPNGEDGTVILAVAES-GVAYSWDLK 236 (340)
Q Consensus 209 ~~~~~~~~~~~~l~~~s~d-g~i~vwd~~ 236 (340)
.+ +|++.+|++++.+ +.|.+|++.
T Consensus 292 ---~~-spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 292 ---DL-DPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ---EE-CTTSSEEEEEETTTTEEEEEEEC
T ss_pred ---EE-CCCCCEEEEEEcCCCcEEEEEEe
Confidence 34 8999988888765 899999553
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-19 Score=169.60 Aligned_cols=194 Identities=9% Similarity=0.009 Sum_probs=142.0
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEM 100 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~w 100 (340)
.+.+++|||||+ +|++++. +.|++||+.++. ....+.. |...+.+++|+|||+.|++++. +.|++|
T Consensus 110 ~v~~~~~SpDg~---------~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~~-~~i~~~ 177 (741)
T 2ecf_A 110 GIVDYQWSPDAQ---------RLLFPLG-GELYLYDLKQEGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIRG-RNLWVI 177 (741)
T ss_dssp ESCCCEECTTSS---------EEEEEET-TEEEEEESSSCSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEET-TEEEEE
T ss_pred CcceeEECCCCC---------EEEEEeC-CcEEEEECCCCCcceEEEccc-CCcccccccCCCCCCEEEEEeC-CcEEEE
Confidence 378999999999 8888876 999999999882 3445666 7888999999999999998874 599999
Q ss_pred eCCCCeEEEEeecCCCC----------------eeEEEEccCCCEEEEe--cC---------------------------
Q 036605 101 KSEMGEVIREFKASEKP----------------ISSSAFLCEEKIFALA--SS--------------------------- 135 (340)
Q Consensus 101 d~~~~~~~~~~~~~~~~----------------i~~l~~~~~~~~l~~~--~~--------------------------- 135 (340)
|+.+++.......+... +..++|+|||++|+++ ++
T Consensus 178 d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 178 DLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp ETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred ecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence 99998876554433332 4789999999988774 22
Q ss_pred ------cEEEEECCC-CceeEEee--cCCCCeEEEEECCCCCEEEEEEc----CCCeEEEEEccCCCCCccCCceeeecC
Q 036605 136 ------EVRILSLEN-GEEVLKFS--DDVGPLQYVSASDGAKIIITAGY----GEKHLQVWRCDISSKTVNKGPALSMRH 202 (340)
Q Consensus 136 ------~i~i~d~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~ 202 (340)
.|++||+.+ ++...... .|...+..++| |||++|++++. .+..|.+||+ .+++...... ...
T Consensus 258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~--~~g~~~~~~~--~~~ 332 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL--ASNQQRVLAH--ETS 332 (741)
T ss_dssp SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET--TTCCEEEEEE--EEC
T ss_pred CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC--CCCceEEEEE--cCC
Confidence 588899988 76543332 46778999999 99999997654 2567899998 4443322221 111
Q ss_pred CCe---eeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 203 SPV---AIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 203 ~~~---~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
..+ ...+ .| +++|.++++++.||.+.||.+.
T Consensus 333 ~~~~~~~~~~--~~-spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 333 PTWVPLHNSL--RF-LDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp SSCCCCCSCC--EE-CTTSCEEEEECTTSSCEEEEEC
T ss_pred CCcCCcCCce--EE-CCCCeEEEEecCCCccEEEEEc
Confidence 111 1122 44 8999999999999987777665
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-19 Score=168.27 Aligned_cols=200 Identities=9% Similarity=0.019 Sum_probs=147.4
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcC-CC-----cEEEEEccCCeeEEEecCCCCC--------------------
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTS-NG-----DILAVDVLTGEMKWKSTGRHPG-------------------- 74 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~-dg-----~i~i~d~~~~~~~~~~~~~h~~-------------------- 74 (340)
...+.+++|||||+ +|++++. || .|++||+.+++....+.. +..
T Consensus 36 ~~~~~~~~~SpdG~---------~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 105 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS---------RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDS-KVVLPGTETLSDEEKARRERQRI 105 (741)
T ss_dssp CCCCEEEEECTTSS---------EEEEEECCSSCTTEEEEEEEETTTCCEEEEECG-GGTC-------------------
T ss_pred CCCCCCceEecCCC---------EEEEEeccCCCCcccEEEEEECCCCceeEccch-hhcccccccccchhhhhhhhhhh
Confidence 45689999999999 8999888 88 899999999987665543 322
Q ss_pred ----CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--EEEEeecCCCCeeEEEEccCCCEEEEe-cCcEEEEECCCCce
Q 036605 75 ----GLAGLAFAKKGRSLHVVGTNGMASEMKSEMGE--VIREFKASEKPISSSAFLCEEKIFALA-SSEVRILSLENGEE 147 (340)
Q Consensus 75 ----~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~~i~i~d~~~~~~ 147 (340)
.|.+++|+|||+.|++++. +.|.+||+.++. ....+..+...+..++|+|||++|+.+ +++|++||+.+++.
T Consensus 106 ~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 106 AAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQ 184 (741)
T ss_dssp -CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEE
T ss_pred ccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCE
Confidence 3789999999999999886 899999999882 344566677789999999999988774 45699999998866
Q ss_pred eEEeecCCCC----------------eEEEEECCCCCEEEEEEcCCC---------------------------------
Q 036605 148 VLKFSDDVGP----------------LQYVSASDGAKIIITAGYGEK--------------------------------- 178 (340)
Q Consensus 148 ~~~~~~~~~~----------------v~~~~~s~~~~~l~s~~~~d~--------------------------------- 178 (340)
......+... +..++|+|||++|++++. |+
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE-cCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 5444333332 477999999999999776 44
Q ss_pred eEEEEEccCCC-CCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeC-----CCcEEEEECCCCC
Q 036605 179 HLQVWRCDISS-KTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAE-----SGVAYSWDLKTVS 239 (340)
Q Consensus 179 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~-----dg~i~vwd~~~~~ 239 (340)
.|.+||+ .+ ++...... ...+...+..+ .| |||.+|++++. ++.|++||+.+++
T Consensus 264 ~l~~~d~--~~~~~~~~~~~-~~~~~~~~~~~--~~--pDg~~l~~~~~~~~~~~~~i~~~d~~~g~ 323 (741)
T 2ecf_A 264 KLGVISP--AEQAQTQWIDL-GKEQDIYLARV--NW--RDPQHLSFQRQSRDQKKLDLVEVTLASNQ 323 (741)
T ss_dssp EEEEECS--STTCCCEEECC-CSCSSEEEEEE--EE--EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred EEEEEEC--CCCCceEEecC-CCCcceEEEEE--Ee--CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence 6777887 34 33211110 00233334444 55 88998887764 5679999998754
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=165.36 Aligned_cols=215 Identities=10% Similarity=0.029 Sum_probs=151.9
Q ss_pred CccCCCCceeeeeeCCCCCCCC---CeEEEEeeccccccccccCceEEEEEcCC---------CcEEEEEccCCeeEEEe
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVV---SYSCLACGFVGKKRRKERGTLLLALGTSN---------GDILAVDVLTGEMKWKS 68 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~~~~~~~~~l~~g~~d---------g~i~i~d~~~~~~~~~~ 68 (340)
+||+.+|+....+. +|.. .|.+++|||||+ +|++++.+ +.|++||+.+++. ..+
T Consensus 41 ~~d~~~g~~~~~~~----~~~~~~~~v~~~~~SpDg~---------~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l 106 (723)
T 1xfd_A 41 LWNVETNTSTVLIE----GKKIESLRAIRYEISPDRE---------YALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSL 106 (723)
T ss_dssp EBCGGGCCCEEEEC----TTTTTTTTCSEEEECTTSS---------EEEEEESCCCCSSSCCCSEEEEEESSSCCC-EEC
T ss_pred EEECCCCcEEEEec----cccccccccceEEECCCCC---------EEEEEecCccceeecceeeEEEEECCCCce-Eec
Confidence 58999998776665 4443 499999999999 89988764 7888999999875 334
Q ss_pred cC--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCe------------------eEEEEccCCC
Q 036605 69 TG--RHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPI------------------SSSAFLCEEK 128 (340)
Q Consensus 69 ~~--~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i------------------~~l~~~~~~~ 128 (340)
.. .|...+..++|+|||+.|++++. +.|++||+.+++.......+...+ .+++|+|||+
T Consensus 107 ~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~ 185 (723)
T 1xfd_A 107 DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT 185 (723)
T ss_dssp CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS
T ss_pred cCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC
Confidence 32 24555899999999999999876 799999999988765554433333 7899999999
Q ss_pred EEEEec--C----------------------------------cEEEEECCCCceeEEeecC------CCCeEEEEECCC
Q 036605 129 IFALAS--S----------------------------------EVRILSLENGEEVLKFSDD------VGPLQYVSASDG 166 (340)
Q Consensus 129 ~l~~~~--~----------------------------------~i~i~d~~~~~~~~~~~~~------~~~v~~~~~s~~ 166 (340)
.|+++. . +|++||+.+++....+..+ ...+..++|+||
T Consensus 186 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpD 265 (723)
T 1xfd_A 186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS 265 (723)
T ss_dssp EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS
T ss_pred EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCC
Confidence 987742 1 4899999988765566544 567889999999
Q ss_pred CCEEEEEEcC---CCeEEEEEccCCCCCccCCceeeecCCCeeee--eecCCCCCCCCEEEE--EeCCC------cEEEE
Q 036605 167 AKIIITAGYG---EKHLQVWRCDISSKTVNKGPALSMRHSPVAID--CKNSPNGEDGTVILA--VAESG------VAYSW 233 (340)
Q Consensus 167 ~~~l~s~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~--~s~dg------~i~vw 233 (340)
|+++++.... +..|.+||+ .+++...... ..+...+.. ....| +|||..|+. ...+| .|++|
T Consensus 266 g~~l~~~~~~~~~~~~i~~~d~--~~g~~~~~~~--~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~l~~~ 340 (723)
T 1xfd_A 266 TKVAVTWLNRAQNVSILTLCDA--TTGVCTKKHE--DESEAWLHRQNEEPVF-SKDGRKFFFIRAIPQGGRGKFYHITVS 340 (723)
T ss_dssp SEEEEEEEETTSCEEEEEEEET--TTCCEEEEEE--EECSSCCCCCCCCCEE-CTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred CeEEEEEEcCCCCeEEEEEEeC--CCCcceEEEE--eccCCEEeccCCCceE-cCCCCeEEEEEecccCCCcceeEEEEE
Confidence 9988775542 357899998 4444322111 112222110 01244 899987765 45666 57778
Q ss_pred EC
Q 036605 234 DL 235 (340)
Q Consensus 234 d~ 235 (340)
|+
T Consensus 341 d~ 342 (723)
T 1xfd_A 341 SS 342 (723)
T ss_dssp CS
T ss_pred ec
Confidence 73
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=145.04 Aligned_cols=206 Identities=12% Similarity=0.048 Sum_probs=144.0
Q ss_pred CccCCC-CceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEc--CCC--cEEEEEccCCeeEEEecCCCCCC
Q 036605 1 IWSTND-GSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGT--SNG--DILAVDVLTGEMKWKSTGRHPGG 75 (340)
Q Consensus 1 vwd~~~-g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~--~dg--~i~i~d~~~~~~~~~~~~~h~~~ 75 (340)
+||+.+ ++...... .++...+.+++|+|+++ +|++++ .++ .|..|+..++. ...+.. + ..
T Consensus 66 ~~d~~~~~~~~~~~~---~~~~~~~~~~~~spdg~---------~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~-~~ 130 (297)
T 2ojh_A 66 RLSLAGDPSPEKVDT---GFATICNNDHGISPDGA---------LYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-N-LP 130 (297)
T ss_dssp EEESSSCCSCEECCC---TTCCCBCSCCEECTTSS---------EEEEEECTTTSSCEEEEEETTCCC-CEECCS-S-SS
T ss_pred EEeCCCCCCceEecc---ccccccccceEECCCCC---------EEEEEEeCCCCcceEEEEECCCCc-eEEeec-C-CC
Confidence 588888 77665554 23457889999999998 888888 334 44555555554 344443 3 35
Q ss_pred eEEEEEecCCCEEE-EEeCCCcEEEEeC--CCCeEEEEeecCCCCeeEEEEccCCCEEEEe---cCcEEEEECC-CCcee
Q 036605 76 LAGLAFAKKGRSLH-VVGTNGMASEMKS--EMGEVIREFKASEKPISSSAFLCEEKIFALA---SSEVRILSLE-NGEEV 148 (340)
Q Consensus 76 v~~v~~~~~~~~l~-s~~~dg~i~~wd~--~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~---~~~i~i~d~~-~~~~~ 148 (340)
+..++|+|+++.|+ +++.++.+.+|++ .++. ...+..+...+.+++|+|+++.++.+ ++.+.+|++. .+..+
T Consensus 131 ~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~ 209 (297)
T 2ojh_A 131 SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV 209 (297)
T ss_dssp EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE
T ss_pred ccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc
Confidence 99999999999877 6778898888885 4444 34566677789999999999988764 3347888775 45566
Q ss_pred EEeecCCCCeEEEEECCCCCEEEEEEcC----------CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCC
Q 036605 149 LKFSDDVGPLQYVSASDGAKIIITAGYG----------EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDG 218 (340)
Q Consensus 149 ~~~~~~~~~v~~~~~s~~~~~l~s~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (340)
..+..|...+..+.|+|++++|++++.. ++.|.+||+ .+++...... ...+...+..+ .| +|++
T Consensus 210 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~--~~~~~~~~~~-~~~~~~~~~~~--~~-spdg 283 (297)
T 2ojh_A 210 ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM--DGGNVETLFD-LFGGQGTMNSP--NW-SPDG 283 (297)
T ss_dssp EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET--TSCSCEEEEE-EEESTTTSCSC--CB-CTTS
T ss_pred EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec--CCCCceeeec-cCCCCcccccc--eE-CCCC
Confidence 7777788889999999999999887762 256999998 3433211111 11333333333 56 8999
Q ss_pred CEEEEEeCCC
Q 036605 219 TVILAVAESG 228 (340)
Q Consensus 219 ~~l~~~s~dg 228 (340)
.+|++++.+.
T Consensus 284 ~~l~~~~~~~ 293 (297)
T 2ojh_A 284 DEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEECC
T ss_pred CEEEEEEecc
Confidence 9998887664
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8e-19 Score=165.64 Aligned_cols=194 Identities=13% Similarity=0.070 Sum_probs=141.1
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMK 101 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd 101 (340)
..|.+++|||+ + .++.+ .++.|++||+.+++... +.. +.+.+.+++|+|||+.|+++ .++.|++||
T Consensus 82 ~~v~~~~~spd-~---------~~~~~-~~~~i~~~d~~~~~~~~-l~~-~~~~~~~~~~SpdG~~la~~-~~~~i~v~~ 147 (706)
T 2z3z_A 82 FPSFRTLDAGR-G---------LVVLF-TQGGLVGFDMLARKVTY-LFD-TNEETASLDFSPVGDRVAYV-RNHNLYIAR 147 (706)
T ss_dssp CCCEEEEETTT-T---------EEEEE-ETTEEEEEETTTTEEEE-EEC-CTTCCTTCEECTTSSEEEEE-ETTEEEEEE
T ss_pred cCceeEEECCC-C---------eEEEE-ECCEEEEEECCCCceEE-ccC-CcccccCCcCCCCCCEEEEE-ECCeEEEEe
Confidence 56999999999 5 45554 35999999999887554 444 67789999999999999985 679999999
Q ss_pred CCC-----CeEEEEeecCCCC--------------eeEEEEccCCCEEEEec----------------------------
Q 036605 102 SEM-----GEVIREFKASEKP--------------ISSSAFLCEEKIFALAS---------------------------- 134 (340)
Q Consensus 102 ~~~-----~~~~~~~~~~~~~--------------i~~l~~~~~~~~l~~~~---------------------------- 134 (340)
+.+ ++.......+... +.+++|+|||++|+++.
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~ 227 (706)
T 2z3z_A 148 GGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPM 227 (706)
T ss_dssp CBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCB
T ss_pred cCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCC
Confidence 998 7765544333332 48999999999998764
Q ss_pred -------CcEEEEECCCCceeEEee--cCCCCeEEEEECCCCCEEEEEEcCCC-----eEEEEEccCCCCCccCCceeee
Q 036605 135 -------SEVRILSLENGEEVLKFS--DDVGPLQYVSASDGAKIIITAGYGEK-----HLQVWRCDISSKTVNKGPALSM 200 (340)
Q Consensus 135 -------~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~ 200 (340)
..|++||+.+++...... .|...+..++|+|||++|++++. ++ .|.+||+ .+++....+. ..
T Consensus 228 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~~v~~~d~--~~g~~~~~~~-~~ 303 (706)
T 2z3z_A 228 AGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEV-NRAQNECKVNAYDA--ETGRFVRTLF-VE 303 (706)
T ss_dssp TTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEE-CTTSCEEEEEEEET--TTCCEEEEEE-EE
T ss_pred CCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEe-CCCCCeeEEEEEEC--CCCceeeEEE-Ec
Confidence 239999999887544332 45677899999999999998776 54 8999998 4442211111 11
Q ss_pred cCCCee---eeeecCCCCC--CCCEEEEEeCCCcEEEEECC
Q 036605 201 RHSPVA---IDCKNSPNGE--DGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 201 ~~~~~~---~~~~~~~~~~--~~~~l~~~s~dg~i~vwd~~ 236 (340)
...... ..+ .| +| +|.++++++.||.++||.+.
T Consensus 304 ~~~~~~~~~~~~--~~-sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 304 TDKHYVEPLHPL--TF-LPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp ECSSCCCCCSCC--EE-CTTCSSEEEEEECTTSSCEEEEEE
T ss_pred cCCCeECccCCc--ee-ecCCCCEEEEEEccCCccEEEEEE
Confidence 111111 111 34 78 99999999999999998775
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=162.93 Aligned_cols=219 Identities=11% Similarity=0.018 Sum_probs=147.8
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCe----
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGL---- 76 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v---- 76 (340)
|||+.+|+.. .+... ..+...+.+++|||||+ .||.++. +.|++||+.+++....... +...+
T Consensus 95 ~~d~~~~~~~-~l~~~-~~~~~~~~~~~~SPdG~---------~la~~~~-~~i~~~~~~~g~~~~~~~~-~~~~~~~~g 161 (723)
T 1xfd_A 95 LSKIPHGDPQ-SLDPP-EVSNAKLQYAGWGPKGQ---------QLIFIFE-NNIYYCAHVGKQAIRVVST-GKEGVIYNG 161 (723)
T ss_dssp EEESSSCCCE-ECCCT-TCCSCCCSBCCBCSSTT---------CEEEEET-TEEEEESSSSSCCEEEECC-CBTTTEEEE
T ss_pred EEECCCCceE-eccCC-ccccccccccEECCCCC---------EEEEEEC-CeEEEEECCCCceEEEecC-CCCCceECc
Confidence 5788888762 33321 24555688999999998 7888875 7999999999876655554 33333
Q ss_pred --------------EEEEEecCCCEEEEEeCCC----------------------------------cEEEEeCCCCeEE
Q 036605 77 --------------AGLAFAKKGRSLHVVGTNG----------------------------------MASEMKSEMGEVI 108 (340)
Q Consensus 77 --------------~~v~~~~~~~~l~s~~~dg----------------------------------~i~~wd~~~~~~~ 108 (340)
.+++|+|||+.|++++.|+ .|.+||+.+++..
T Consensus 162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~ 241 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD 241 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC
T ss_pred ccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee
Confidence 7899999999999887553 7999999988755
Q ss_pred EEeecC------CCCeeEEEEccCCCEEEEec------CcEEEEECCCCceeEEeec-CCCCe----EEEEECCCCCEEE
Q 036605 109 REFKAS------EKPISSSAFLCEEKIFALAS------SEVRILSLENGEEVLKFSD-DVGPL----QYVSASDGAKIII 171 (340)
Q Consensus 109 ~~~~~~------~~~i~~l~~~~~~~~l~~~~------~~i~i~d~~~~~~~~~~~~-~~~~v----~~~~~s~~~~~l~ 171 (340)
..+..+ ...+..++|+|||+++++.. ..|++||+.+++....+.. +...+ ..++|+|||+.|+
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 321 (723)
T 1xfd_A 242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF 321 (723)
T ss_dssp EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEE
Confidence 555543 45688999999999886632 2399999999876655533 33443 3789999999887
Q ss_pred EE-EcCCC----eEEEEEcc-CCCCCc--cCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCC---CcEEEEECCC
Q 036605 172 TA-GYGEK----HLQVWRCD-ISSKTV--NKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAES---GVAYSWDLKT 237 (340)
Q Consensus 172 s~-~~~d~----~i~iwd~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d---g~i~vwd~~~ 237 (340)
.. +..++ ...||.++ ...+.. ...+. .++......+ .| +|++..|+..+.+ +.+++|++..
T Consensus 322 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~~~--~~-spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 322 FIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGDWDVTKIL--AY-DEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSSSCEEEEE--EE-ETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred EEEecccCCCcceeEEEEEeccCCCCccceeEee--cCCeEEEeee--EE-cCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 64 44467 44444442 122220 22221 1121111111 45 8999999776655 7899999865
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-17 Score=155.59 Aligned_cols=199 Identities=14% Similarity=0.121 Sum_probs=140.7
Q ss_pred eEEEEeeccccccccccCceEEEEEc---------------------------------CCCcEEEEEccCCeeEEEecC
Q 036605 24 YSCLACGFVGKKRRKERGTLLLALGT---------------------------------SNGDILAVDVLTGEMKWKSTG 70 (340)
Q Consensus 24 v~~l~~sp~~~~~~~~~~~~~l~~g~---------------------------------~dg~i~i~d~~~~~~~~~~~~ 70 (340)
+.+++|||||+ +|++++ .+..|++||+.+++.......
T Consensus 183 ~~~~~~SpDg~---------~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 183 EKGTFWSPKGS---------CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCSEEECTTSS---------EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred CceEEECCCCC---------EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 58999999999 888887 446899999999876544432
Q ss_pred -CCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEeCCCC-eEEEEeec-CCC---CeeEEEEcc--CCCEEEEecCc-
Q 036605 71 -RHPGGLAGLAFAKKGRSLHVVGTNG-----MASEMKSEMG-EVIREFKA-SEK---PISSSAFLC--EEKIFALASSE- 136 (340)
Q Consensus 71 -~h~~~v~~v~~~~~~~~l~s~~~dg-----~i~~wd~~~~-~~~~~~~~-~~~---~i~~l~~~~--~~~~l~~~~~~- 136 (340)
.|...+.+++|+|||+.|++++.++ .|.+||+.++ ........ +.. .+..++|+| +|+++++++.+
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 3677899999999999999887775 8999999998 43332322 221 246789999 99988876543
Q ss_pred -EEEEECC-CCceeEEeecCCCCeEE-EEECCCCCEEEEEEcCCC--eEEEEEccCCCCCccCCceeeecCCCeeeeeec
Q 036605 137 -VRILSLE-NGEEVLKFSDDVGPLQY-VSASDGAKIIITAGYGEK--HLQVWRCDISSKTVNKGPALSMRHSPVAIDCKN 211 (340)
Q Consensus 137 -i~i~d~~-~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (340)
+++|++. ++..+..+..+...+.. ++|+|+++.|+.++..++ .+.||.++..++.. ..+ .+...+..+
T Consensus 334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l----~~~~~~~~~-- 406 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDL----TPESGMHRT-- 406 (706)
T ss_dssp SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EES----CCSSSEEEE--
T ss_pred ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eec----cCCCceEEE--
Confidence 6777665 56667777778778877 799999999888777454 34444443244331 111 233334443
Q ss_pred CCCCCCCCEEEEEeCC----CcEEEEECCCCC
Q 036605 212 SPNGEDGTVILAVAES----GVAYSWDLKTVS 239 (340)
Q Consensus 212 ~~~~~~~~~l~~~s~d----g~i~vwd~~~~~ 239 (340)
.| +|++.+++..+.+ +.|++||+.+++
T Consensus 407 ~~-spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 407 QL-SPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EE-CTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EE-CCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 55 8999988876544 569999998764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=163.86 Aligned_cols=194 Identities=12% Similarity=0.050 Sum_probs=153.9
Q ss_pred CCCeEEEEee-ccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCC-CeEEEEEecCCCEEEEEeCCCcEE
Q 036605 21 VVSYSCLACG-FVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPG-GLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 21 ~~~v~~l~~s-p~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
...+.+++|| |+|+ +|++++ ++.|++|++.+++.. .+.. |.+ .+..++|+ +|+.|++++.+..+.
T Consensus 295 ~~~v~~~~~S~pdG~---------~la~~~-~~~i~~~~~~~~~~~-~~~~-~~~~~~~~~~~s-dg~~l~~~s~~~~l~ 361 (1045)
T 1k32_A 295 IPSKFAEDFSPLDGD---------LIAFVS-RGQAFIQDVSGTYVL-KVPE-PLRIRYVRRGGD-TKVAFIHGTREGDFL 361 (1045)
T ss_dssp CGGGGEEEEEECGGG---------CEEEEE-TTEEEEECTTSSBEE-ECSC-CSCEEEEEECSS-SEEEEEEEETTEEEE
T ss_pred ccccceeeecCCCCC---------EEEEEE-cCEEEEEcCCCCceE-EccC-CCcceEEeeeEc-CCCeEEEEECCCceE
Confidence 3468999999 9998 788877 889999999888644 4555 777 89999999 999999999888888
Q ss_pred -EEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 99 -EMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 99 -~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
+|++.+++... +..+...+..++|+|+|++|++++. .|++||+.+++....+..|...+..++|+|||++|++++.
T Consensus 362 ~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~ 440 (1045)
T 1k32_A 362 GIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP 440 (1045)
T ss_dssp EEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred EEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEec
Confidence 99998876543 4467788999999999999987554 4999999999877777788999999999999999988776
Q ss_pred CC---------CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 176 GE---------KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 176 ~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.+ +.|++||+ .+++ ...+. .+......+ .| +++|.+|++++.++...+|+...
T Consensus 441 ~~~~~~~~~~~~~i~l~d~--~~g~-~~~l~---~~~~~~~~~--~~-spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 441 LKHGETDGYVMQAIHVYDM--EGRK-IFAAT---TENSHDYAP--AF-DADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp ECSSTTCSCCEEEEEEEET--TTTE-EEECS---CSSSBEEEE--EE-CTTSCEEEEEESCCCCCEECSSS
T ss_pred CccccccCCCCCeEEEEEC--CCCc-EEEee---CCCcccCCc--eE-cCCCCEEEEEecccCCcCcchhc
Confidence 22 48999998 3433 22222 333333333 56 89999999999988888887654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-17 Score=140.22 Aligned_cols=202 Identities=11% Similarity=0.070 Sum_probs=138.8
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc-CCeeEEEecCCCCCCeEEEEEecCCCE--EEEEe------
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL-TGEMKWKSTGRHPGGLAGLAFAKKGRS--LHVVG------ 92 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~--l~s~~------ 92 (340)
..+..++|+|+++ +|++++.+ .|.+|++. +++..........+.+.+++|+|+|+. +++++
T Consensus 40 ~~~~~~a~spdg~---------~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~ 109 (365)
T 1jof_A 40 EPISWMTFDHERK---------NIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAV 109 (365)
T ss_dssp CCCSEEEECTTSS---------EEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred CCCcEEEECCCCC---------EEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCccee
Confidence 4678899999999 88888887 99999997 787543332101134667899999994 45553
Q ss_pred -------CCCcEEEEeCC-CCeEEEEee----cCCCCeeEEEEccCCCEEEEec---CcEEEEECC-CCcee--EEee--
Q 036605 93 -------TNGMASEMKSE-MGEVIREFK----ASEKPISSSAFLCEEKIFALAS---SEVRILSLE-NGEEV--LKFS-- 152 (340)
Q Consensus 93 -------~dg~i~~wd~~-~~~~~~~~~----~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~-~~~~~--~~~~-- 152 (340)
.++.+.+|++. +++....+. .+...+.+++|+|+|+++++++ +.|++||+. +++.. ..+.
T Consensus 110 ~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 189 (365)
T 1jof_A 110 YANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP 189 (365)
T ss_dssp EEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred ccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC
Confidence 68999999997 466544333 2456789999999999887743 349999998 67543 2333
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccC---Cce-eee---cCCC------eeeeeecC-CCCCCC
Q 036605 153 DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNK---GPA-LSM---RHSP------VAIDCKNS-PNGEDG 218 (340)
Q Consensus 153 ~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~---~~~-~~~---~~~~------~~~~~~~~-~~~~~~ 218 (340)
.|...+..++|+|+|+++++++..++.|.+|+++..+++... .+. +.. ++.. ....+ . + +|+|
T Consensus 190 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i--~~~-spdG 266 (365)
T 1jof_A 190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV--CAL-TFSG 266 (365)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE--EEE-CTTS
T ss_pred CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccE--EEE-CCCC
Confidence 235678999999999999888776889999998533333211 000 000 1110 23333 4 4 8999
Q ss_pred CEEEEEeCCC------cEEEEECC
Q 036605 219 TVILAVAESG------VAYSWDLK 236 (340)
Q Consensus 219 ~~l~~~s~dg------~i~vwd~~ 236 (340)
.+|++++.++ .|.+|++.
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEEC
T ss_pred CEEEEECCCCCCCCCCeEEEEEEC
Confidence 9888776433 79999986
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-16 Score=133.99 Aligned_cols=201 Identities=12% Similarity=0.089 Sum_probs=130.8
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEc-CCCcEEEEEccCCeeEEEe------cC-------CCCCCeEEEEEecCC
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGT-SNGDILAVDVLTGEMKWKS------TG-------RHPGGLAGLAFAKKG 85 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~------~~-------~h~~~v~~v~~~~~~ 85 (340)
+......+++ +++ +|+++. .++.|.+|++.....+..+ .+ .+...+.+++|+|+|
T Consensus 98 ~~~~p~~~~~--dg~---------~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg 166 (361)
T 3scy_A 98 MGADPCYLTT--NGK---------NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG 166 (361)
T ss_dssp SSSCEEEEEE--CSS---------EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred CCCCcEEEEE--CCC---------EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence 3445666777 666 555554 6889999999754322111 11 022346889999999
Q ss_pred CEEEEEeC-CCcEEEEeCCCCeE------E------EE-eecCCCCeeEEEEccCCCEEEEec---CcEEEEECCCCce-
Q 036605 86 RSLHVVGT-NGMASEMKSEMGEV------I------RE-FKASEKPISSSAFLCEEKIFALAS---SEVRILSLENGEE- 147 (340)
Q Consensus 86 ~~l~s~~~-dg~i~~wd~~~~~~------~------~~-~~~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~~~~~- 147 (340)
++|++++. ++.|.+|++..... + .. .......+..++|+|+|+++++++ +.|.+||+.+++.
T Consensus 167 ~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~ 246 (361)
T 3scy_A 167 KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD 246 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE
Confidence 97776664 78999998764331 1 11 222345678999999999886643 4499999987743
Q ss_pred -eEEee---cCCCCeEEEEECCCCCEEEEEEcC-CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEE
Q 036605 148 -VLKFS---DDVGPLQYVSASDGAKIIITAGYG-EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVIL 222 (340)
Q Consensus 148 -~~~~~---~~~~~v~~~~~s~~~~~l~s~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 222 (340)
+..+. .+......++|+|||++|+++... ++.|.+|+++...+.......+..+..+..+. | +|+|.+|+
T Consensus 247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~----~-spdg~~l~ 321 (361)
T 3scy_A 247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFI----I-TPNGKYLL 321 (361)
T ss_dssp EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEE----E-CTTSCEEE
T ss_pred EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEE----E-CCCCCEEE
Confidence 23332 233456899999999999888875 68999999953333321111222122233333 3 89999888
Q ss_pred EEe-CCCcEEEEECC
Q 036605 223 AVA-ESGVAYSWDLK 236 (340)
Q Consensus 223 ~~s-~dg~i~vwd~~ 236 (340)
+++ .++.|.+|++.
T Consensus 322 ~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 322 VACRDTNVIQIFERD 336 (361)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEEE
Confidence 887 67889997554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-17 Score=149.85 Aligned_cols=204 Identities=14% Similarity=0.067 Sum_probs=140.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcC---CCcEEEEEccC---CeeEEEecCCCCC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTS---NGDILAVDVLT---GEMKWKSTGRHPG 74 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~---dg~i~i~d~~~---~~~~~~~~~~h~~ 74 (340)
||++.+|+.. .++ .++...+..++|||| + ++++++. +....+|.+.. +... .+.. + .
T Consensus 48 lw~~~~g~~~-~lt---~~~~~~~~~~~~spd-~---------~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~-~ 110 (582)
T 3o4h_A 48 AYLYDGGETV-KLN---REPINSVLDPHYGVG-R---------VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-V-K 110 (582)
T ss_dssp EEEEETTEEE-ECC---SSCCSEECEECTTCS-E---------EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-S-C
T ss_pred EEEEcCCCcE-eee---cccccccccccCCCC-e---------EEEEeccCCCCcceEEEEEeccCCCccc-cccC-C-C
Confidence 5777555544 343 244468999999999 8 7887765 45556655433 3323 4443 2 2
Q ss_pred CeEEEEEecCCCE-EEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec------CcEEEEECCCCce
Q 036605 75 GLAGLAFAKKGRS-LHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS------SEVRILSLENGEE 147 (340)
Q Consensus 75 ~v~~v~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~------~~i~i~d~~~~~~ 147 (340)
.+...+|+|+++. +++.+.++.+.+||+.+++.......+. .+++|+|||+++++++ ..|++||+.+++.
T Consensus 111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~ 187 (582)
T 3o4h_A 111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL 187 (582)
T ss_dssp SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC
T ss_pred CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc
Confidence 4557788988863 3444445556699999987655544332 8899999999998632 3399999998864
Q ss_pred eEEeecCCCCeEEEEECCCCCEEEEEEcCCC--eEEEEEccCCCCCccCCceeeecCCCeeeeeecC--------CCCCC
Q 036605 148 VLKFSDDVGPLQYVSASDGAKIIITAGYGEK--HLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNS--------PNGED 217 (340)
Q Consensus 148 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 217 (340)
..+..|...+..++|+|||++|+++.. ++ .|++||+ .+++.. ... .+...+..+ . | +||
T Consensus 188 -~~l~~~~~~~~~~~~SpDG~~l~~~~~-~~~~~i~~~d~--~~~~~~-~~~---~~~~~~~~~--~~~~~~~~~~-spd 256 (582)
T 3o4h_A 188 -RVFDSGEGSFSSASISPGMKVTAGLET-AREARLVTVDP--RDGSVE-DLE---LPSKDFSSY--RPTAITWLGY-LPD 256 (582)
T ss_dssp -EEECCSSCEEEEEEECTTSCEEEEEEC-SSCEEEEEECT--TTCCEE-ECC---CSCSHHHHH--CCSEEEEEEE-CTT
T ss_pred -eEeecCCCccccceECCCCCEEEEccC-CCeeEEEEEcC--CCCcEE-Ecc---CCCcChhhh--hhccccceeE-cCC
Confidence 467788888999999999999996554 88 8889988 444432 211 333222222 3 5 899
Q ss_pred CCEEEEEeCCCcEEEEEC
Q 036605 218 GTVILAVAESGVAYSWDL 235 (340)
Q Consensus 218 ~~~l~~~s~dg~i~vwd~ 235 (340)
|..+++++.||.+++|++
T Consensus 257 g~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 257 GRLAVVARREGRSAVFID 274 (582)
T ss_dssp SCEEEEEEETTEEEEEET
T ss_pred CcEEEEEEcCCcEEEEEE
Confidence 988999999999999999
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-16 Score=136.25 Aligned_cols=175 Identities=17% Similarity=0.083 Sum_probs=135.5
Q ss_pred CccCCCCceeeeeeCCC-CCCCCCeEEEEeeccccccccccCceEEEEEc------------CCCcEEEEEccCCeeEEE
Q 036605 1 IWSTNDGSLLAEWKQPD-GEPVVSYSCLACGFVGKKRRKERGTLLLALGT------------SNGDILAVDVLTGEMKWK 67 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~------------~dg~i~i~d~~~~~~~~~ 67 (340)
+||+.+++....+.... ..+...+.+++|+|+++ +|+++. .++.|.+||+.+++....
T Consensus 60 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---------~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 130 (337)
T 1pby_B 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK---------TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA 130 (337)
T ss_dssp EEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS---------EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE
T ss_pred EEECCCCCeEeeEEcCCcccccccccceEECCCCC---------EEEEEecccccccccccccCceEEEEECCCCcEEEE
Confidence 58888888877666220 00123677899999998 788775 579999999999987777
Q ss_pred ecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC--------------------------------
Q 036605 68 STGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASE-------------------------------- 115 (340)
Q Consensus 68 ~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-------------------------------- 115 (340)
+.. ...+.+++|+|++++|+++ ++.|.+||+.+++....+..+.
T Consensus 131 ~~~--~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 206 (337)
T 1pby_B 131 FEA--PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTAR 206 (337)
T ss_dssp EEC--CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred EeC--CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccc
Confidence 763 3467889999999988887 6889999999887765443221
Q ss_pred ----------------------------------CCeeEEEEccCCCEEEEecCcEEEEECCCCceeEEeecCCCCeEEE
Q 036605 116 ----------------------------------KPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYV 161 (340)
Q Consensus 116 ----------------------------------~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~ 161 (340)
..+.+++|+|++++++++++.|++||+.+++.+..+..+ ..+.++
T Consensus 207 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 285 (337)
T 1pby_B 207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLP-HSYYSV 285 (337)
T ss_dssp TTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEECS-SCCCEE
T ss_pred cccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeCCeEEEEECCCCcCcceecCC-CceeeE
Confidence 123468999999999888888999999999887776543 467899
Q ss_pred EECCCCCEEEEEEcCCCeEEEEEccCCCCCc
Q 036605 162 SASDGAKIIITAGYGEKHLQVWRCDISSKTV 192 (340)
Q Consensus 162 ~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~ 192 (340)
+|+|+++++++++. ++.|.+||+ .+++.
T Consensus 286 ~~s~dg~~l~~~~~-~~~i~v~d~--~~~~~ 313 (337)
T 1pby_B 286 NVSTDGSTVWLGGA-LGDLAAYDA--ETLEK 313 (337)
T ss_dssp EECTTSCEEEEESB-SSEEEEEET--TTCCE
T ss_pred EECCCCCEEEEEcC-CCcEEEEEC--cCCcE
Confidence 99999999998766 999999998 44443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-18 Score=160.86 Aligned_cols=222 Identities=10% Similarity=0.027 Sum_probs=145.0
Q ss_pred CccCCCCceeeeeeCCCCCCCC---CeEEEEeeccccccccccCceEEEEEcC---------CCcEEEEEccCCeeEEEe
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVV---SYSCLACGFVGKKRRKERGTLLLALGTS---------NGDILAVDVLTGEMKWKS 68 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~~~~~~~~~l~~g~~---------dg~i~i~d~~~~~~~~~~ 68 (340)
+||+.+|+....+. ++.. .+.+++|||||+ +|++++. ++.|++||+.+++.+...
T Consensus 40 ~~~~~~g~~~~~~~----~~~~~~~~~~~~~~SpDg~---------~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~ 106 (719)
T 1z68_A 40 LYNIETGQSYTILS----NRTMKSVNASNYGLSPDRQ---------FVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN 106 (719)
T ss_dssp EEESSSCCEEEEEC----HHHHHTTTCSEEEECTTSS---------EEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred EEEcCCCcEEEEEc----cccccccceeeEEECCCCC---------eEEEEecCceeEEeecceEEEEEECCCCccccce
Confidence 58888888765554 3332 489999999999 8888876 789999999998752111
Q ss_pred cCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEe-ecCCCCe-----------------eEEEEccCCCEE
Q 036605 69 TGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREF-KASEKPI-----------------SSSAFLCEEKIF 130 (340)
Q Consensus 69 ~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~i-----------------~~l~~~~~~~~l 130 (340)
. ....+..++|+|||+.|+++. ++.|++|++.+++..... .++...+ .+++|+|||+.|
T Consensus 107 ~--l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~l 183 (719)
T 1z68_A 107 E--LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFL 183 (719)
T ss_dssp C--CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEE
T ss_pred e--cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEE
Confidence 1 234688999999999999875 779999999988765432 2222212 489999999999
Q ss_pred EEecC------------------------------------cEEEEECCCCcee--------EEeecCCCCeEEEEECCC
Q 036605 131 ALASS------------------------------------EVRILSLENGEEV--------LKFSDDVGPLQYVSASDG 166 (340)
Q Consensus 131 ~~~~~------------------------------------~i~i~d~~~~~~~--------~~~~~~~~~v~~~~~s~~ 166 (340)
+++.. +|++||+.+++.. ..+.+|...+..++|+||
T Consensus 184 a~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD 263 (719)
T 1z68_A 184 AYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD 263 (719)
T ss_dssp EEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS
T ss_pred EEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC
Confidence 87431 4889999988642 123457788999999999
Q ss_pred CCEEEEEEcC-C--CeEEEEEcc--CCCCCccCCce-eeecCCCeeee---eecCCCCCCCCEEEE--EeCCC--cEEEE
Q 036605 167 AKIIITAGYG-E--KHLQVWRCD--ISSKTVNKGPA-LSMRHSPVAID---CKNSPNGEDGTVILA--VAESG--VAYSW 233 (340)
Q Consensus 167 ~~~l~s~~~~-d--~~i~iwd~~--~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~l~~--~s~dg--~i~vw 233 (340)
++.+++.... + ..|.+||+. ..+++...... ....+...+.. ....| +|+|..++. ...+| .|++|
T Consensus 264 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~g~~~l~~~ 342 (719)
T 1z68_A 264 ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVF-SYDAISYYKIFSDKDGYKHIHYI 342 (719)
T ss_dssp SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEE-CTTSSCEEEEEECTTSCEEEEEE
T ss_pred CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEE-CCCCCeEEEEEEccCCceEEEEE
Confidence 8766664331 2 247777721 14443322221 00133332220 01144 789886554 44555 56777
Q ss_pred ECCCCC
Q 036605 234 DLKTVS 239 (340)
Q Consensus 234 d~~~~~ 239 (340)
++.+++
T Consensus 343 ~~~~~~ 348 (719)
T 1z68_A 343 KDTVEN 348 (719)
T ss_dssp SSCSTT
T ss_pred ECCCCc
Confidence 776644
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-16 Score=134.52 Aligned_cols=213 Identities=10% Similarity=0.052 Sum_probs=138.3
Q ss_pred cCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCC----CcEEEEEccC--Cee--EEEecCCCCC
Q 036605 3 STNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSN----GDILAVDVLT--GEM--KWKSTGRHPG 74 (340)
Q Consensus 3 d~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d----g~i~i~d~~~--~~~--~~~~~~~h~~ 74 (340)
|..+|++..... .+...+..++|+|+++ +|++++.+ +.|.+|++.. ++. +..... +..
T Consensus 35 d~~~g~~~~~~~----~~~~~p~~l~~spdg~---------~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~-~~~ 100 (361)
T 3scy_A 35 NEETGESLPLSD----AEVANPSYLIPSADGK---------FVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT-MGA 100 (361)
T ss_dssp ETTTCCEEEEEE----EECSCCCSEEECTTSS---------EEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC-SSS
T ss_pred eCCCCCEEEeec----ccCCCCceEEECCCCC---------EEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc-CCC
Confidence 445666554333 1446677899999998 88888875 7999998876 442 233333 455
Q ss_pred CeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCeEEEEe------ec--------CCCCeeEEEEccCCCEEEEec---Cc
Q 036605 75 GLAGLAFAKKGRSLHVVG-TNGMASEMKSEMGEVIREF------KA--------SEKPISSSAFLCEEKIFALAS---SE 136 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~------~~--------~~~~i~~l~~~~~~~~l~~~~---~~ 136 (340)
....+++ +++.|++++ .++.|.+|++.....+..+ .+ +...+.+++|+|+|+++++++ +.
T Consensus 101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 178 (361)
T 3scy_A 101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQ 178 (361)
T ss_dssp CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCE
Confidence 6778888 788888776 5789999998754322111 11 122357899999999776633 34
Q ss_pred EEEEECCCCce------e------EEe-ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeee--c
Q 036605 137 VRILSLENGEE------V------LKF-SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSM--R 201 (340)
Q Consensus 137 i~i~d~~~~~~------~------~~~-~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~ 201 (340)
|.+|++..... + ..+ ..+...+..++|+|+|+++++++..++.|.+|+++ .+.......+.. .
T Consensus 179 v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~--~g~~~~~~~~~~~~~ 256 (361)
T 3scy_A 179 IHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA--DGMLDEIQTVAADTV 256 (361)
T ss_dssp EEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE--TTEEEEEEEEESCSS
T ss_pred EEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec--CCceEEeEEEecCCC
Confidence 99998875431 1 112 23345678999999999998888668999999984 332211111110 1
Q ss_pred CCCeeeeeecCCCCCCCCEEEEEeCC--CcEEEEECC
Q 036605 202 HSPVAIDCKNSPNGEDGTVILAVAES--GVAYSWDLK 236 (340)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~l~~~s~d--g~i~vwd~~ 236 (340)
+......+ .+ +|+|.+|+++..+ +.|.+|++.
T Consensus 257 ~~~~~~~i--~~-spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 257 NAQGSGDI--HL-SPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp CCCCEEEE--EE-CTTSSEEEEEECSSSCEEEEEEEC
T ss_pred CCCCcccE--EE-CCCCCEEEEECCCCCCEEEEEEEc
Confidence 11112222 44 8999998776655 889999986
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-16 Score=136.55 Aligned_cols=220 Identities=10% Similarity=0.014 Sum_probs=142.1
Q ss_pred CccCC-CCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceE--EEEEc-------------CCCcEEEEEcc-CCe
Q 036605 1 IWSTN-DGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLL--LALGT-------------SNGDILAVDVL-TGE 63 (340)
Q Consensus 1 vwd~~-~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~--l~~g~-------------~dg~i~i~d~~-~~~ 63 (340)
+||+. +|++....... .+ ..+.+++|+|+++ + ++++. .+|.+.+|++. +++
T Consensus 64 ~~~~~~~g~~~~~~~~~--~~-g~~~~~~~spdg~---------~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~ 131 (365)
T 1jof_A 64 SFAVKSPTEIVHEASHP--IG-GHPRANDADTNTR---------AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK 131 (365)
T ss_dssp EEEEEETTEEEEEEEEE--CC-SSGGGGCTTSCCE---------EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC
T ss_pred EEEECCCCCEEEeeEee--cC-CCCccEEECCCCC---------EEEEEEecCCcceeccceeecCCceEEEEccCCCCc
Confidence 47776 77765433211 11 2355689999997 5 33443 68999999997 465
Q ss_pred eEEEec---CCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCC-CCeEE--EEee--cCCCCeeEEEEccCCCEEEEec
Q 036605 64 MKWKST---GRHPGGLAGLAFAKKGRSLHVVGT-NGMASEMKSE-MGEVI--REFK--ASEKPISSSAFLCEEKIFALAS 134 (340)
Q Consensus 64 ~~~~~~---~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~~wd~~-~~~~~--~~~~--~~~~~i~~l~~~~~~~~l~~~~ 134 (340)
....+. ..+...+.+++|+|+|++|++++. ++.|.+|++. +++.. ..+. .+...+..++|+|+|+++++++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~ 211 (365)
T 1jof_A 132 LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALM 211 (365)
T ss_dssp EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEE
T ss_pred CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEE
Confidence 443332 114567999999999999888764 5799999998 77653 2333 2355689999999999887643
Q ss_pred ---CcEEEEECC--CCcee---EEeec-------CCC------CeEEEE-ECCCCCEEEEEEcCCC-----eEEEEEccC
Q 036605 135 ---SEVRILSLE--NGEEV---LKFSD-------DVG------PLQYVS-ASDGAKIIITAGYGEK-----HLQVWRCDI 187 (340)
Q Consensus 135 ---~~i~i~d~~--~~~~~---~~~~~-------~~~------~v~~~~-~s~~~~~l~s~~~~d~-----~i~iwd~~~ 187 (340)
+.|.+|++. +++.. ..+.. |.. .+..++ |+|||++|+++...++ .|.+|+++.
T Consensus 212 ~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 212 EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred CCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC
Confidence 458898765 55432 12221 121 478899 9999999887665334 899999942
Q ss_pred CCCCccCCce-ee-ecCCCeeeeeecCCCCC---CCCEEEEEeCC-CcEEEEECCCC
Q 036605 188 SSKTVNKGPA-LS-MRHSPVAIDCKNSPNGE---DGTVILAVAES-GVAYSWDLKTV 238 (340)
Q Consensus 188 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~---~~~~l~~~s~d-g~i~vwd~~~~ 238 (340)
.++...... .. ....+..+ .+ +| +|.+|++++.+ +.|.+|++...
T Consensus 292 -~g~~~~~~~~~~~~~~~~~~~----a~-sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 292 -CGSIEKQLFLSPTPTSGGHSN----AV-SPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -TSCEEEEEEEEECSSCCTTCC----CE-EECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred -CCCEEEeeeeeecCCCCcccc----ee-cCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 333211110 10 01112222 22 67 79999998875 89999998654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=157.33 Aligned_cols=209 Identities=11% Similarity=0.046 Sum_probs=151.9
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAF 81 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 81 (340)
||..+++.. .+. +|...+.+++|+|+|+ +|++++.++.|++||+.+++....+.. |.+.+.+++|
T Consensus 364 ~d~~~~~~~-~l~----~~~~~~~~~~~SpDG~---------~la~~~~~~~v~~~d~~tg~~~~~~~~-~~~~v~~~~~ 428 (1045)
T 1k32_A 364 YDYRTGKAE-KFE----ENLGNVFAMGVDRNGK---------FAVVANDRFEIMTVDLETGKPTVIERS-REAMITDFTI 428 (1045)
T ss_dssp EETTTCCEE-ECC----CCCCSEEEEEECTTSS---------EEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCCEEE
T ss_pred EECCCCCce-Eec----CCccceeeeEECCCCC---------EEEEECCCCeEEEEECCCCceEEeccC-CCCCccceEE
Confidence 566666543 233 4668899999999999 899999999999999999987766666 8889999999
Q ss_pred ecCCCEEEEEeCCC----------cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCC----
Q 036605 82 AKKGRSLHVVGTNG----------MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENG---- 145 (340)
Q Consensus 82 ~~~~~~l~s~~~dg----------~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~---- 145 (340)
+|||++|++++.++ .|++||+.+++ ...+..+...+..++|+|+|+.|++.+.. ..+|+....
T Consensus 429 SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~ 507 (1045)
T 1k32_A 429 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF 507 (1045)
T ss_dssp CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEEC
T ss_pred CCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccccc
Confidence 99999998887654 89999999887 56677777888999999999988774432 333332111
Q ss_pred ---------------------------------------ceeEEeecCCCCeEEEEECCCCCEEEE------------EE
Q 036605 146 ---------------------------------------EEVLKFSDDVGPLQYVSASDGAKIIIT------------AG 174 (340)
Q Consensus 146 ---------------------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s------------~~ 174 (340)
..+..+..|.+.+..+.++|++.++++ ..
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~ 587 (1045)
T 1k32_A 508 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGA 587 (1045)
T ss_dssp CSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCC
T ss_pred ccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCccccccccc
Confidence 112334456678899999999987775 11
Q ss_pred cCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 175 YGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
.....|.+||+ .+++. ..+ . ..+..+ .+ ++||.+|++++.+ .|++||+.+++
T Consensus 588 ~~~~~l~~~d~--~~~~~-~~l----~--~~v~~~--~~-S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 588 PEKGVLLKYDV--KTRKV-TEV----K--NNLTDL--RL-SADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCCEEEEEEET--TTCCE-EEE----E--EEEEEE--EE-CTTSCEEEEEETT-SCEEEEESSCT
T ss_pred CCCceEEEEEC--CCCcE-EEe----e--cCcceE--EE-CCCCCEEEEEcCC-cEEEEeCccCc
Confidence 12446677776 44432 111 1 112222 33 8999999998877 69999998876
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-16 Score=136.30 Aligned_cols=215 Identities=13% Similarity=0.092 Sum_probs=149.6
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEE-----EEeeccccccccccCceEEEEEcC-CC--cEEEEEccCCeeEEEecCCCC
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSC-----LACGFVGKKRRKERGTLLLALGTS-NG--DILAVDVLTGEMKWKSTGRHP 73 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~-----l~~sp~~~~~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~h~ 73 (340)
+|..+|.....++ .+...+.. .+|||||+ +|+.++. +| .|.+||+.+++....... +.
T Consensus 15 ~~~~~g~~~~~lt----~~~~~~~~~~~~~~~~SpDg~---------~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-~~ 80 (388)
T 3pe7_A 15 QDASTGAQVTRLT----PPDVTCHRNYFYQKCFTRDGS---------KLLFGGAFDGPWNYYLLDLNTQVATQLTEG-RG 80 (388)
T ss_dssp ECTTTCCEEEECS----CTTSCEECCCTTSCCBCTTSC---------EEEEEECTTSSCEEEEEETTTCEEEECCCS-SC
T ss_pred ecCCCCcceEEec----CCcccccchhhcCccCCCCCC---------EEEEEEcCCCCceEEEEeCCCCceEEeeeC-CC
Confidence 3566777777776 44444554 78999998 7888776 66 488899999886655544 65
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEE--EEccCCCEEEEe------------------
Q 036605 74 GGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSS--AFLCEEKIFALA------------------ 133 (340)
Q Consensus 74 ~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l--~~~~~~~~l~~~------------------ 133 (340)
..+..++|+|||+.|+.++.++.|++||+.+++....+..+...+... .++|++..++..
T Consensus 81 ~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 81 DNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp BCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred CCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhh
Confidence 566678899999999999999999999999998776666555544333 358999988741
Q ss_pred ------cCcEEEEECCCCceeEEeecCCCCeEEEEECC-CCCEEEEEEcC-----CCeEEEEEccCCCCCccCCceeeec
Q 036605 134 ------SSEVRILSLENGEEVLKFSDDVGPLQYVSASD-GAKIIITAGYG-----EKHLQVWRCDISSKTVNKGPALSMR 201 (340)
Q Consensus 134 ------~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~ 201 (340)
...|++||+.+++. ..+..+...+..+.|+| ||+.|+..... ...|.++|+ ..+.. ..+. .
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~--~~~~~-~~l~---~ 233 (388)
T 3pe7_A 161 FYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE--DGTNM-RKVK---T 233 (388)
T ss_dssp HGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET--TSCCC-EESC---C
T ss_pred hhccCCcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC--CCCce-EEee---e
Confidence 13399999999854 44555667789999999 99988886652 226667775 33322 1111 2
Q ss_pred CCC--eeeeeecCCCCCCCCEEEEEeC-CC----cEEEEECCCCCc
Q 036605 202 HSP--VAIDCKNSPNGEDGTVILAVAE-SG----VAYSWDLKTVSQ 240 (340)
Q Consensus 202 ~~~--~~~~~~~~~~~~~~~~l~~~s~-dg----~i~vwd~~~~~~ 240 (340)
+.. .+... .| +|||..|+..+. ++ .|++||+.+++.
T Consensus 234 ~~~~~~~~~~--~~-spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 234 HAEGESCTHE--FW-VPDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp CCTTEEEEEE--EE-CTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred CCCCcccccc--eE-CCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 221 22222 45 899997765543 22 399999988764
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-16 Score=134.40 Aligned_cols=146 Identities=14% Similarity=0.073 Sum_probs=113.0
Q ss_pred EEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCC
Q 036605 26 CLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVV-GTNGMASEMKSEM 104 (340)
Q Consensus 26 ~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~dg~i~~wd~~~ 104 (340)
.++++++++ ++++++.++.|.+||+.+++....+.......+..++|+|+++.++.+ ..++.|.+||+.+
T Consensus 4 g~~~~~~~~---------~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t 74 (349)
T 1jmx_B 4 GPALKAGHE---------YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT 74 (349)
T ss_dssp CCCCCTTCE---------EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cccccCCCE---------EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC
Confidence 456777777 899999999999999999998877765222367899999999876654 4679999999999
Q ss_pred CeEEEEeecCC------CCeeEEEEccCCCEEEEec--------------CcEEEEECCCCcee---EEeecCCCCeEEE
Q 036605 105 GEVIREFKASE------KPISSSAFLCEEKIFALAS--------------SEVRILSLENGEEV---LKFSDDVGPLQYV 161 (340)
Q Consensus 105 ~~~~~~~~~~~------~~i~~l~~~~~~~~l~~~~--------------~~i~i~d~~~~~~~---~~~~~~~~~v~~~ 161 (340)
++.+..+.... ..+..++|+|+|+++++++ +.|.+||+.+++.. ..+. +...+.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~ 153 (349)
T 1jmx_B 75 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLM 153 (349)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCE
T ss_pred CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccce
Confidence 98877766432 2378899999999998755 66999999885433 3333 34468889
Q ss_pred EECCCCCEEEEEEcCCCeEEEEEc
Q 036605 162 SASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 162 ~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
+|+|+|+ ++++ ++.|.+||+
T Consensus 154 ~~s~dg~-l~~~---~~~i~~~d~ 173 (349)
T 1jmx_B 154 RAADDGS-LYVA---GPDIYKMDV 173 (349)
T ss_dssp EECTTSC-EEEE---SSSEEEECT
T ss_pred eECCCCc-EEEc---cCcEEEEeC
Confidence 9999999 6653 334999998
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=146.41 Aligned_cols=195 Identities=16% Similarity=0.034 Sum_probs=135.8
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcC-CCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC---CCc
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTS-NGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT---NGM 96 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---dg~ 96 (340)
..+|.+++|+|||+ .||.++. ||++.||++.+++. ..+...+...+..++|+|| +.+++++. +..
T Consensus 21 ~~~~~~~~~~~DG~---------~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~ 89 (582)
T 3o4h_A 21 AVEKYSLQGVVDGD---------KLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQ 89 (582)
T ss_dssp HSCEEEEEEEETTT---------EEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCC
T ss_pred ccchheeecCCCCC---------eEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcc
Confidence 46799999999998 8888876 99999999977764 4555523368999999999 77887765 444
Q ss_pred EEEEeCCC---CeEEEEeecCCCCeeEEEEccCCCEE--EEecC-cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEE
Q 036605 97 ASEMKSEM---GEVIREFKASEKPISSSAFLCEEKIF--ALASS-EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKII 170 (340)
Q Consensus 97 i~~wd~~~---~~~~~~~~~~~~~i~~l~~~~~~~~l--~~~~~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 170 (340)
..+|.+.. +... .+... ..+...+|+|+++.+ +++.. .+.+||+.+++...... +.. .+++|+|||++|
T Consensus 90 ~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~l 164 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLI 164 (582)
T ss_dssp EEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEE
T ss_pred eEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEE
Confidence 55544322 2222 33322 234567888888643 33333 37799999886544333 333 789999999999
Q ss_pred EEEEcCC----CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCC--cEEEEECCCCCcc
Q 036605 171 ITAGYGE----KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESG--VAYSWDLKTVSQD 241 (340)
Q Consensus 171 ~s~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg--~i~vwd~~~~~~~ 241 (340)
++++. + +.|++||+ .+++.. .+. .+....... .| +|||.+|+++..+| .|++||+.+++..
T Consensus 165 a~~~~-~~~~~~~i~~~d~--~~g~~~-~l~---~~~~~~~~~--~~-SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 165 AGLGF-FGGGRVSLFTSNL--SSGGLR-VFD---SGEGSFSSA--SI-SPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEEE-EETTEEEEEEEET--TTCCCE-EEC---CSSCEEEEE--EE-CTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred EEEEE-cCCCCeEEEEEcC--CCCCce-Eee---cCCCccccc--eE-CCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 98776 5 67899997 444332 222 444444444 66 89999999888888 8999999876543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-17 Score=154.62 Aligned_cols=198 Identities=10% Similarity=-0.004 Sum_probs=136.3
Q ss_pred EEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCC---CeEEEEEecCCCEEEEEeC---------
Q 036605 26 CLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPG---GLAGLAFAKKGRSLHVVGT--------- 93 (340)
Q Consensus 26 ~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~---~v~~v~~~~~~~~l~s~~~--------- 93 (340)
.++|+|+++ +++++ .|++|++||+.+++....+.. |.. .+.+++|+|||+.|++++.
T Consensus 20 ~~~~s~dg~---------~~~~~-~d~~i~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~ 88 (719)
T 1z68_A 20 FPNWISGQE---------YLHQS-ADNNIVLYNIETGQSYTILSN-RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSY 88 (719)
T ss_dssp CCEESSSSE---------EEEEC-TTSCEEEEESSSCCEEEEECH-HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred ccEECCCCe---------EEEEc-CCCCEEEEEcCCCcEEEEEcc-ccccccceeeEEECCCCCeEEEEecCceeEEeec
Confidence 689999998 66655 699999999999987665554 432 4899999999999998876
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ecCcEEEEECCCCceeEEe-ecCCCCe-------------
Q 036605 94 NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-ASSEVRILSLENGEEVLKF-SDDVGPL------------- 158 (340)
Q Consensus 94 dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~~~~~~~~~~-~~~~~~v------------- 158 (340)
++.|++||+.+++.+.... ....+..++|+|||+.|+. .+++|++||+.+++..... .++...+
T Consensus 89 ~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~ 167 (719)
T 1z68_A 89 TATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEM 167 (719)
T ss_dssp EEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHT
T ss_pred ceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeec
Confidence 6899999999987631111 1246889999999998876 5556999999888654322 2222212
Q ss_pred ----EEEEECCCCCEEEEEEcCCC---------------------------------eEEEEEccCCCCCccCCceee--
Q 036605 159 ----QYVSASDGAKIIITAGYGEK---------------------------------HLQVWRCDISSKTVNKGPALS-- 199 (340)
Q Consensus 159 ----~~~~~s~~~~~l~s~~~~d~---------------------------------~i~iwd~~~~~~~~~~~~~~~-- 199 (340)
..++|+|||++|++++..++ .|++||+ .+++......+.
T Consensus 168 ~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~--~~~~~~~~~~~~~~ 245 (719)
T 1z68_A 168 LATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT--TYPAYVGPQEVPVP 245 (719)
T ss_dssp TCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES--SCHHHHCCEECCCC
T ss_pred ccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC--CCCCccceeEccCC
Confidence 48999999999999776221 7888998 343321000100
Q ss_pred ---ecCCCeeeeeecCCCCCCCCEEEEEeCC----CcEEEEE----CCCCCc
Q 036605 200 ---MRHSPVAIDCKNSPNGEDGTVILAVAES----GVAYSWD----LKTVSQ 240 (340)
Q Consensus 200 ---~~~~~~~~~~~~~~~~~~~~~l~~~s~d----g~i~vwd----~~~~~~ 240 (340)
..+...+..+ .| +||+.++++.... ..|++|| ..+++.
T Consensus 246 ~~~~~~~~~~~~~--~~-SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~ 294 (719)
T 1z68_A 246 AMIASSDYYFSWL--TW-VTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC 294 (719)
T ss_dssp HHHHTSCEEEEEE--EE-SSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred ccCCCCcceEEEe--EE-eCCCeEEEEEeccccCeEEEEEEcccCCCCCCce
Confidence 0233344444 56 8888777664433 2488899 666443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=7.5e-16 Score=146.04 Aligned_cols=200 Identities=10% Similarity=-0.014 Sum_probs=138.8
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCC-----eEEEEEecCCCEEEEEeCC--
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGG-----LAGLAFAKKGRSLHVVGTN-- 94 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~-----v~~v~~~~~~~~l~s~~~d-- 94 (340)
....+++|+|+++ +++++ ||+|++||+.+++....+.+ |... ...++|||||+.|++++.+
T Consensus 17 ~~~~~~~w~~dg~---------~~~~~--~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~ 84 (740)
T 4a5s_A 17 LKLYSLRWISDHE---------YLYKQ--ENNILVFNAEYGNSSVFLEN-STFDEFGHSINDYSISPDGQFILLEYNYVK 84 (740)
T ss_dssp CCCCCEEECSSSE---------EEEEE--TTEEEEEETTTCCEEEEECT-TTTTTCCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred ccccccEECCCCc---------EEEEc--CCcEEEEECCCCceEEEEec-hhhhhhcccccceEECCCCCEEEEEECCee
Confidence 3456899999999 88886 99999999999987766665 5432 2458999999999998876
Q ss_pred -------CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ecCcEEEEECCCCceeEE-eecCCCCe-------
Q 036605 95 -------GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-ASSEVRILSLENGEEVLK-FSDDVGPL------- 158 (340)
Q Consensus 95 -------g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~~~~~~~~~-~~~~~~~v------- 158 (340)
+.+.+||+.+++.. .+..+...+..++|||||+.|+. .+++|++||+.+++..+. ..++...+
T Consensus 85 ~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~ 163 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDW 163 (740)
T ss_dssp CSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCH
T ss_pred eEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccc
Confidence 56779999998854 46666778999999999998876 556699999988764431 12222222
Q ss_pred ----------EEEEECCCCCEEEEEEcCCC-----------------------------------eEEEEEccCCC---C
Q 036605 159 ----------QYVSASDGAKIIITAGYGEK-----------------------------------HLQVWRCDISS---K 190 (340)
Q Consensus 159 ----------~~~~~s~~~~~l~s~~~~d~-----------------------------------~i~iwd~~~~~---~ 190 (340)
..+.|||||++|+.....+. .|.+||+ .+ +
T Consensus 164 v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~--~~~~~~ 241 (740)
T 4a5s_A 164 VYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNT--DSLSSV 241 (740)
T ss_dssp HHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEET--TSCCSS
T ss_pred cccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEEC--CCCCCC
Confidence 35899999999998764233 4666666 23 2
Q ss_pred CccCCceeee-----cCCCeeeeeecCCCCCCCCEEEEEeC----CCcEEEEECCCCC
Q 036605 191 TVNKGPALSM-----RHSPVAIDCKNSPNGEDGTVILAVAE----SGVAYSWDLKTVS 239 (340)
Q Consensus 191 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~s~----dg~i~vwd~~~~~ 239 (340)
+......+.. .+...+..+ .| +|||..++.... +..|++||+.+++
T Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~--~w-spdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 242 TNATSIQITAPASMLIGDHYLCDV--TW-ATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp SCCCEEEECCCHHHHTSCEEEEEE--EE-EETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CcceEEEecCCccCCCCCeEEEEE--EE-eCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 1101111111 133334444 66 799986665533 3379999988765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-14 Score=123.85 Aligned_cols=218 Identities=14% Similarity=0.105 Sum_probs=148.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-eEEEec--------CC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-MKWKST--------GR 71 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~--------~~ 71 (340)
+||..+|+++..+. ..+-.....++++|+++ ++++...++.|++||..... .+..+. ..
T Consensus 73 ~~d~~~g~~~~~~~---~~~~~~p~gia~d~~g~---------l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~ 140 (329)
T 3fvz_A 73 VIDPNNAEILQSSG---KNLFYLPHGLSIDTDGN---------YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQN 140 (329)
T ss_dssp EECTTTCCEEEEEC---TTTCSSEEEEEECTTSC---------EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTT
T ss_pred EEECCCCeEEeccC---CCccCCceEEEECCCCC---------EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCcc
Confidence 36777788776554 23446788999999999 89999999999999976542 444442 12
Q ss_pred CCCCeEEEEEec-CCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCC----------CCeeEEEEccC-CCEEEEe--cCc
Q 036605 72 HPGGLAGLAFAK-KGRSLHVVG-TNGMASEMKSEMGEVIREFKASE----------KPISSSAFLCE-EKIFALA--SSE 136 (340)
Q Consensus 72 h~~~v~~v~~~~-~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~----------~~i~~l~~~~~-~~~l~~~--~~~ 136 (340)
+......++++| ++..+++.+ .++.|.+|+ .++..+..+.... .....++++|+ +.++++. ++.
T Consensus 141 ~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~ 219 (329)
T 3fvz_A 141 HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR 219 (329)
T ss_dssp CCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE
T ss_pred ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE
Confidence 455789999999 677777665 589999999 5677776664322 23789999999 5555553 334
Q ss_pred EEEEECCCCceeEEee--cCCCCeEEEEECCCCCEEEEEE------cCCCeEEEEEccCCCCCccCCceeeecCCCeeee
Q 036605 137 VRILSLENGEEVLKFS--DDVGPLQYVSASDGAKIIITAG------YGEKHLQVWRCDISSKTVNKGPALSMRHSPVAID 208 (340)
Q Consensus 137 i~i~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 208 (340)
|++||..+++.+..+. .+...+..++|+| +..+.+.+ ..+..|.+|++ .+++....+.....+......
T Consensus 220 I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~--~~g~~~~~~~~~~~~~~~p~~ 296 (329)
T 3fvz_A 220 IQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNF--SSGEIIDVFKPVRKHFDMPHD 296 (329)
T ss_dssp EEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEET--TTCCEEEEECCSSSCCSSEEE
T ss_pred EEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEc--CCCeEEEEEcCCCCccCCeeE
Confidence 9999999888887773 4556788999999 43333321 11458999997 444433221100122222233
Q ss_pred eecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 209 CKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 209 ~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
+ ++ +++|..+++...++.|++|++..
T Consensus 297 i--a~-~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 297 I--VA-SEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp E--EE-CTTSEEEEEESSSCCEEEEEEEE
T ss_pred E--EE-CCCCCEEEEECCCCEEEEEeCCc
Confidence 3 33 78998888888899999999865
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-15 Score=141.71 Aligned_cols=222 Identities=11% Similarity=0.049 Sum_probs=148.7
Q ss_pred CccCCCCceeeeeeCCCCCCCC-----CeEEEEeeccccccccccCceEEEEEcCC---------CcEEEEEccCCeeEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVV-----SYSCLACGFVGKKRRKERGTLLLALGTSN---------GDILAVDVLTGEMKW 66 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~-----~v~~l~~sp~~~~~~~~~~~~~l~~g~~d---------g~i~i~d~~~~~~~~ 66 (340)
+||+.+|+....+. +|.. ....++|||||+ +|+.++.+ +.+.+||+.+++..
T Consensus 40 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~Spdg~---------~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~- 105 (740)
T 4a5s_A 40 VFNAEYGNSSVFLE----NSTFDEFGHSINDYSISPDGQ---------FILLEYNYVKQWRHSYTASYDIYDLNKRQLI- 105 (740)
T ss_dssp EEETTTCCEEEEEC----TTTTTTCCSCCCEEEECTTSS---------EEEEEEEEEECSSSCEEEEEEEEETTTTEEC-
T ss_pred EEECCCCceEEEEe----chhhhhhcccccceEECCCCC---------EEEEEECCeeeEEEccceEEEEEECCCCcEE-
Confidence 58999998766555 3332 234488999999 88888876 66789999999754
Q ss_pred EecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEe-ecCCCCe-----------------eEEEEccCCC
Q 036605 67 KSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREF-KASEKPI-----------------SSSAFLCEEK 128 (340)
Q Consensus 67 ~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~i-----------------~~l~~~~~~~ 128 (340)
.+.. |.+.+..++|||||+.|+.+ .++.|++|++.+++..... .++...+ ..+.|||||+
T Consensus 106 ~l~~-~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~ 183 (740)
T 4a5s_A 106 TEER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT 183 (740)
T ss_dssp CSSC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS
T ss_pred Eccc-CCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCC
Confidence 5665 78899999999999999987 4679999999988754321 2222212 3589999999
Q ss_pred EEEEec---C-----------------------------------cEEEEECCC---Cc--eeEEee------cCCCCeE
Q 036605 129 IFALAS---S-----------------------------------EVRILSLEN---GE--EVLKFS------DDVGPLQ 159 (340)
Q Consensus 129 ~l~~~~---~-----------------------------------~i~i~d~~~---~~--~~~~~~------~~~~~v~ 159 (340)
.|+... . +|++||+.+ ++ ....+. +|...+.
T Consensus 184 ~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 263 (740)
T 4a5s_A 184 FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLC 263 (740)
T ss_dssp EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEE
T ss_pred EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEE
Confidence 987631 0 378899988 73 223333 3777899
Q ss_pred EEEECCCCCEEEEEEcC---CCeEEEEEccCCCCC----ccCCc-eeeecCCCeee---eeecCCCCCCCCEEE-EEeC-
Q 036605 160 YVSASDGAKIIITAGYG---EKHLQVWRCDISSKT----VNKGP-ALSMRHSPVAI---DCKNSPNGEDGTVIL-AVAE- 226 (340)
Q Consensus 160 ~~~~s~~~~~l~s~~~~---d~~i~iwd~~~~~~~----~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~l~-~~s~- 226 (340)
.++|+|||+.++..... +..|.+||+. +++ ..... .+...+..++. .....| +|||..++ ..+.
T Consensus 264 ~~~wspdg~~~~~~~~r~~~~~~i~~~d~~--tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f-spDG~~l~~~~s~~ 340 (740)
T 4a5s_A 264 DVTWATQERISLQWLRRIQNYSVMDICDYD--ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF-TLDGNSFYKIISNE 340 (740)
T ss_dssp EEEEEETTEEEEEEEESSTTEEEEEEEEEE--TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE-CTTSSEEEEEEECT
T ss_pred EEEEeCCCeEEEEEeCCCCCEEEEEEEECC--CCccccceeEEEEeeeccCCceEccCcCCCceE-cCCCCEEEEEEEcC
Confidence 99999999876654432 3478999984 443 11111 11123333322 111245 89999877 6653
Q ss_pred CC--cEEEEECCCCCcc
Q 036605 227 SG--VAYSWDLKTVSQD 241 (340)
Q Consensus 227 dg--~i~vwd~~~~~~~ 241 (340)
+| .|++|++..+...
T Consensus 341 ~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 341 EGYRHICYFQIDKKDCT 357 (740)
T ss_dssp TSCEEEEEEETTCSSCE
T ss_pred CCceEEEEEECCCCceE
Confidence 33 5888888765443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-13 Score=114.60 Aligned_cols=214 Identities=14% Similarity=0.179 Sum_probs=143.6
Q ss_pred ccCCCCceeeeeeCCC--CCCCCCeEEEEee-ccccccccccCceEEEEEcC-CCcEEEEEccCCeeEEEecCCCCCCeE
Q 036605 2 WSTNDGSLLAEWKQPD--GEPVVSYSCLACG-FVGKKRRKERGTLLLALGTS-NGDILAVDVLTGEMKWKSTGRHPGGLA 77 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~--~~~~~~v~~l~~s-p~~~~~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~h~~~v~ 77 (340)
||.. |.....+.... ..+...+.++++. ++++ ++++... ++.|.+|| .+++.+..+...+...+.
T Consensus 56 ~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~---------l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~ 124 (286)
T 1q7f_A 56 FDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD---------IIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPR 124 (286)
T ss_dssp ECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE---------EEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEE
T ss_pred ECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe---------EEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCce
Confidence 5655 55554443210 1244578899994 6777 6666543 88999999 567767666543556789
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEee--cCCCCeeEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeec
Q 036605 78 GLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK--ASEKPISSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSD 153 (340)
Q Consensus 78 ~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~ 153 (340)
+++++++|+.+++...++.|.+||.. ++.+..+. .+...+..++++|+++++++. ++.|++||.. ++.+..+..
T Consensus 125 ~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~ 202 (286)
T 1q7f_A 125 GVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGG 202 (286)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESC
T ss_pred EEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEcc
Confidence 99999999877776778899999964 56665554 334568999999999877764 4459999974 455666643
Q ss_pred C--CCCeEEEEECCCCCEEEEEEcCCC-eEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcE
Q 036605 154 D--VGPLQYVSASDGAKIIITAGYGEK-HLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVA 230 (340)
Q Consensus 154 ~--~~~v~~~~~s~~~~~l~s~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i 230 (340)
+ ...+..++++++|..+++... ++ .|.+|+. .++....+... ........+ .+ .++|.++++ +.++.|
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~-~~~~i~~~~~---~g~~~~~~~~~-~~~~~~~~i--~~-~~~g~l~vs-~~~~~v 273 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNH-NNFNLTIFTQ---DGQLISALESK-VKHAQCFDV--AL-MDDGSVVLA-SKDYRL 273 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECS-SSCEEEEECT---TSCEEEEEEES-SCCSCEEEE--EE-ETTTEEEEE-ETTTEE
T ss_pred CCccCCCcEEEECCCCCEEEEeCC-CCEEEEEECC---CCCEEEEEccc-CCCCcceeE--EE-CCCCcEEEE-CCCCeE
Confidence 3 357889999999977776544 65 9999995 33332222211 111112222 33 678876666 679999
Q ss_pred EEEECCC
Q 036605 231 YSWDLKT 237 (340)
Q Consensus 231 ~vwd~~~ 237 (340)
++|++..
T Consensus 274 ~v~~~~~ 280 (286)
T 1q7f_A 274 YIYRYVQ 280 (286)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 9999754
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-13 Score=117.01 Aligned_cols=214 Identities=12% Similarity=0.042 Sum_probs=151.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCC----CCCe
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRH----PGGL 76 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h----~~~v 76 (340)
+||+.+++++.++. .......++++++++ ++++...++.|.+||..+++....+.... ....
T Consensus 68 viD~~t~~~~~~i~-----~~~~p~~i~~~~~g~---------lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p 133 (328)
T 3dsm_A 68 AIDINTFKEVGRIT-----GFTSPRYIHFLSDEK---------AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGST 133 (328)
T ss_dssp EEETTTCCEEEEEE-----CCSSEEEEEEEETTE---------EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBC
T ss_pred EEECcccEEEEEcC-----CCCCCcEEEEeCCCe---------EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCc
Confidence 47888999888875 235678999999888 66666589999999999998777665411 1145
Q ss_pred EEEEEecCCCEEEEEe--CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec------------CcEEEEEC
Q 036605 77 AGLAFAKKGRSLHVVG--TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS------------SEVRILSL 142 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~------------~~i~i~d~ 142 (340)
..+++ ++..|+.++ .++.|.++|+.+++.+..+.... ....++++|+|++++++. +.|.++|.
T Consensus 134 ~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 134 EQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp CCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred ceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEEC
Confidence 56777 355666665 47899999999999888776543 457899999999887743 35999999
Q ss_pred CCCceeEEeecC-CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeee-cCCCeeeeeecCCCCC-CCC
Q 036605 143 ENGEEVLKFSDD-VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSM-RHSPVAIDCKNSPNGE-DGT 219 (340)
Q Consensus 143 ~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~ 219 (340)
.+++....+... ......++|+|++++++++ . +.|.+||. .+++......+.. ...+..+.+ +| ++.
T Consensus 211 ~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~-~--~~v~~~d~--~t~~~~~~~~~~~~~~~p~gi~v-----dp~~g~ 280 (328)
T 3dsm_A 211 ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI-N--NDIWRMPV--EADRVPVRPFLEFRDTKYYGLTV-----NPNNGE 280 (328)
T ss_dssp TTTEEEEEEECCTTCCCEEEEECTTSCEEEEE-S--SSEEEEET--TCSSCCSSCSBCCCSSCEEEEEE-----CTTTCC
T ss_pred CCCeEEEEEecCCCCCceeEEEecCCCEEEEE-c--cEEEEEEC--CCCceeeeeeecCCCCceEEEEE-----cCCCCe
Confidence 999877666532 2367899999999988884 3 38888887 4444322111111 122333334 66 566
Q ss_pred EEEEE----eCCCcEEEEECCCCCccC
Q 036605 220 VILAV----AESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 220 ~l~~~----s~dg~i~vwd~~~~~~~~ 242 (340)
.+++. ..++.|.+||.. ++.+.
T Consensus 281 lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 281 VYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp EEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred EEEEcccccccCCEEEEECCC-CCEEE
Confidence 66665 578899999987 65554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-15 Score=137.61 Aligned_cols=198 Identities=10% Similarity=0.044 Sum_probs=129.4
Q ss_pred EEEee--ccccccccccCceE-EEEEcC-CCcEEEEEcc--C-CeeEEEecCC----CCCCeEEEEEecCCCEEEEEeCC
Q 036605 26 CLACG--FVGKKRRKERGTLL-LALGTS-NGDILAVDVL--T-GEMKWKSTGR----HPGGLAGLAFAKKGRSLHVVGTN 94 (340)
Q Consensus 26 ~l~~s--p~~~~~~~~~~~~~-l~~g~~-dg~i~i~d~~--~-~~~~~~~~~~----h~~~v~~v~~~~~~~~l~s~~~d 94 (340)
...|+ ||++ . |+.++. +..|+++++. . ++ ...+... |...+..++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~---------~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~ 150 (662)
T 3azo_A 81 PWAGVPRPAGG---------PLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEE 150 (662)
T ss_dssp CEEEECCSSSS---------CEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEE
T ss_pred cceeeeecCCC---------eEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEec
Confidence 55565 9998 6 666553 5677777765 3 43 4455441 45678999999999999988876
Q ss_pred ----------CcEEEEeCCC------CeEEEEee-cCCCCeeEEEEccCCCEEEEec----------CcEEEEECC-CC-
Q 036605 95 ----------GMASEMKSEM------GEVIREFK-ASEKPISSSAFLCEEKIFALAS----------SEVRILSLE-NG- 145 (340)
Q Consensus 95 ----------g~i~~wd~~~------~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~----------~~i~i~d~~-~~- 145 (340)
..|++||+.+ ++. ..+. .+...+..++|+|||++|+..+ .+|++||+. ++
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5899999988 554 3444 5556788899999999987632 249999998 56
Q ss_pred --ceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCcee--eecCCCe---eeeeecCCCCCCC
Q 036605 146 --EEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPAL--SMRHSPV---AIDCKNSPNGEDG 218 (340)
Q Consensus 146 --~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~ 218 (340)
+.......+...+..+.|+|||++++++ ..++...||.++..+++....... ....+.+ ...+ .+ ++++
T Consensus 230 ~~~~~~l~~~~~~~~~~~~~spdg~l~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~--~~-~~~~ 305 (662)
T 3azo_A 230 FADTRTLLGGPEEAIAQAEWAPDGSLIVAT-DRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWF--AP-LANG 305 (662)
T ss_dssp EEEEEEEEEETTBCEEEEEECTTSCEEEEE-CTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSE--EE-CTTS
T ss_pred ccccEEeCCCCCceEcceEECCCCeEEEEE-CCCCCeEEEEEECCCCceeecccccccccCccccccCceE--eE-eCCC
Confidence 3333334557889999999999955554 447855555553334332211110 0001111 0111 22 5788
Q ss_pred CEEEEEeCCCcEEEE--ECCCCC
Q 036605 219 TVILAVAESGVAYSW--DLKTVS 239 (340)
Q Consensus 219 ~~l~~~s~dg~i~vw--d~~~~~ 239 (340)
.++++++. +.++|| |+.+++
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTTE
T ss_pred EEEEEEEc-CccEEEEEECCCCc
Confidence 99999988 999999 554433
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.8e-15 Score=127.83 Aligned_cols=219 Identities=8% Similarity=-0.034 Sum_probs=141.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+||+.+|+...... ++...+..++|+||++ .|+.++.++.|++||+.+++....+.. +.+.+....
T Consensus 64 ~~d~~~g~~~~lt~----~~~~~~~~~~~spdg~---------~l~~~~~~~~l~~~d~~~g~~~~~~~~-~~~~~~~~~ 129 (388)
T 3pe7_A 64 LLDLNTQVATQLTE----GRGDNTFGGFLSPDDD---------ALFYVKDGRNLMRVDLATLEENVVYQV-PAEWVGYGT 129 (388)
T ss_dssp EEETTTCEEEECCC----SSCBCSSSCEECTTSS---------EEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEE
T ss_pred EEeCCCCceEEeee----CCCCCccceEEcCCCC---------EEEEEeCCCeEEEEECCCCcceeeeec-hhhcccccc
Confidence 35777777654433 4455555678999999 899999999999999999986655554 555554444
Q ss_pred --EecCCCEEEEE----------------------eCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEcc-CCCEEEEec-
Q 036605 81 --FAKKGRSLHVV----------------------GTNGMASEMKSEMGEVIREFKASEKPISSSAFLC-EEKIFALAS- 134 (340)
Q Consensus 81 --~~~~~~~l~s~----------------------~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~- 134 (340)
+++++..++.. +.+..|.+||+.+++... +..+...+..++|+| +|+.++...
T Consensus 130 ~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~ 208 (388)
T 3pe7_A 130 WVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHE 208 (388)
T ss_dssp EEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEEC
T ss_pred eeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEe
Confidence 48899988743 234689999999987544 444566789999999 999886522
Q ss_pred -------CcEEEEECCCCceeEEeecCC--CCeEEEEECCCCCEEEEEEcCCC----eEEEEEccCCCCCccCCceeeec
Q 036605 135 -------SEVRILSLENGEEVLKFSDDV--GPLQYVSASDGAKIIITAGYGEK----HLQVWRCDISSKTVNKGPALSMR 201 (340)
Q Consensus 135 -------~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~ 201 (340)
..|+++|+..+. ...+..+. ..+..+.|+|||+.|+..+..++ .|.+||+ .+++......+. .
T Consensus 209 ~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~--~~g~~~~l~~~~-~ 284 (388)
T 3pe7_A 209 GPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP--ETLENRQLTSMP-A 284 (388)
T ss_dssp SCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT--TTCCEEEEEEEC-C
T ss_pred cCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec--CCCceEEEEcCC-C
Confidence 148888887664 34444444 35778899999998866554222 3889998 444321111110 0
Q ss_pred CCCeeeeee-cCCCCCCCCEEEEE---------eCCCcEEEEECCCCC
Q 036605 202 HSPVAIDCK-NSPNGEDGTVILAV---------AESGVAYSWDLKTVS 239 (340)
Q Consensus 202 ~~~~~~~~~-~~~~~~~~~~l~~~---------s~dg~i~vwd~~~~~ 239 (340)
+........ ..| +|+|..|+.. ..+..|++||+.+++
T Consensus 285 ~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 285 CSHLMSNYDGSLM-VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp EEEEEECTTSSEE-EEEECCC------------CCCCEEEEEETTTTE
T ss_pred ceeeeecCCCCeE-ccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 000000000 023 7888877754 456689999998754
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=130.12 Aligned_cols=219 Identities=12% Similarity=0.003 Sum_probs=140.4
Q ss_pred ccCCCCceeeeeeCCC-CCCCCCeEEEEeeccccccccccCceEEEEEcCC---CcEEEEEccCCeeEEEecCCCCCCeE
Q 036605 2 WSTNDGSLLAEWKQPD-GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSN---GDILAVDVLTGEMKWKSTGRHPGGLA 77 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~h~~~v~ 77 (340)
.|..+|..+..+.... ..+...+.+++|||+|+ +|+..... ..|++||+.+++.. .+...+.....
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~---------~l~~~~~~~g~~~l~~~d~~~~~~~-~l~~~~~~~~~ 84 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGK---------KLLFAGDFDGNRNYYLLNLETQQAV-QLTEGKGDNTF 84 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSC---------EEEEEECTTSSCEEEEEETTTTEEE-ECCCSSCBCTT
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCC---------EEEEEEecCCCceEEEEECCCCcEE-EeecCCCCccc
Confidence 3677887776666220 01122377889999998 77666433 47888999888754 34431332233
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeE-------------------EEEccCCCEEEEe-----
Q 036605 78 GLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS-------------------SAFLCEEKIFALA----- 133 (340)
Q Consensus 78 ~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~-------------------l~~~~~~~~l~~~----- 133 (340)
.+.|+|||+.|+.++.++.|++||+.+++.......+...... +.++|+++.++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 4789999999999999999999999988766555433332222 3456777766542
Q ss_pred cC--cEEEEECCCCceeEEeecCCCCeEEEEECC-CCCEEEEEEcCC-----CeEEEEEccCCCCCccCCceeeecCC-C
Q 036605 134 SS--EVRILSLENGEEVLKFSDDVGPLQYVSASD-GAKIIITAGYGE-----KHLQVWRCDISSKTVNKGPALSMRHS-P 204 (340)
Q Consensus 134 ~~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~-~ 204 (340)
+. .|++||+.+++.... ..+...+..+.|+| ++..|+..+... ..|.+|++ ..+... .+. .+. .
T Consensus 165 ~~~~~l~~~d~~~g~~~~~-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~--~~~~~~-~l~---~~~~~ 237 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVI-HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNE--DGSNVR-KIK---EHAEG 237 (396)
T ss_dssp CCCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEET--TSCCCE-ESS---CCCTT
T ss_pred CCcceEEEEECCCCcEEee-ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEEC--CCCcee-Eee---ccCCC
Confidence 22 399999998865433 34567789999999 788777655422 35777776 333211 111 111 1
Q ss_pred -eeeeeecCCCCCCCCEEEEEeCC-----CcEEEEECCCCCc
Q 036605 205 -VAIDCKNSPNGEDGTVILAVAES-----GVAYSWDLKTVSQ 240 (340)
Q Consensus 205 -~~~~~~~~~~~~~~~~l~~~s~d-----g~i~vwd~~~~~~ 240 (340)
.+..+ .| +|+|.+|+.++.+ +.|++||+.+++.
T Consensus 238 ~~~~~~--~~-spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 238 ESCTHE--FW-IPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp EEEEEE--EE-CTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred ccccce--EE-CCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 22222 45 8999988777554 4499999987653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-13 Score=119.83 Aligned_cols=216 Identities=10% Similarity=0.039 Sum_probs=138.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEc----------CCCcEEEEEccCCeeEEEecC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGT----------SNGDILAVDVLTGEMKWKSTG 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~----------~dg~i~i~d~~~~~~~~~~~~ 70 (340)
+||+.+++++..+. .+..+ .++|+|+++ +|+++. .++.|.+||..+++.+..+..
T Consensus 35 v~D~~t~~~~~~i~----~g~~p--~i~~spdg~---------~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~ 99 (361)
T 2oiz_A 35 VYDYTNGKFLGMVP----TAFNG--HVQVSNDGK---------KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL 99 (361)
T ss_dssp EEETTTCCEEEEEE----CCEEE--EEEECTTSS---------EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred EEECCCCeEEEEec----CCCCC--ceEECCCCC---------EEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence 47888998887776 33334 899999998 788775 367799999999887777653
Q ss_pred C-----CCCCeEEEEEecCCCEEEEEeC--CCcEEEEeCCCCeEEEE-eecCCC---------CeeEEEEccCCCEEEE-
Q 036605 71 R-----HPGGLAGLAFAKKGRSLHVVGT--NGMASEMKSEMGEVIRE-FKASEK---------PISSSAFLCEEKIFAL- 132 (340)
Q Consensus 71 ~-----h~~~v~~v~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~-~~~~~~---------~i~~l~~~~~~~~l~~- 132 (340)
. +......++|+|||++|+++.. ++.|.+||+.+++.+.. +..... ...-++++++|.+++.
T Consensus 100 ~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 100 PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTIN 179 (361)
T ss_dssp CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence 1 1245678999999999999874 57999999999988776 432110 0111333333333321
Q ss_pred ---------------------------------------ecCcEEEEECCCCcee--EEeecC----------CCCeEEE
Q 036605 133 ---------------------------------------ASSEVRILSLENGEEV--LKFSDD----------VGPLQYV 161 (340)
Q Consensus 133 ---------------------------------------~~~~i~i~d~~~~~~~--~~~~~~----------~~~v~~~ 161 (340)
.++.+.++|+...... ..+... ......+
T Consensus 180 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 259 (361)
T 2oiz_A 180 LGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV 259 (361)
T ss_dssp ECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred ECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence 1112455555433211 111100 0111237
Q ss_pred EECCCCCEEEEEEc----------CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEE
Q 036605 162 SASDGAKIIITAGY----------GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAY 231 (340)
Q Consensus 162 ~~s~~~~~l~s~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~ 231 (340)
+|+|++..++++.. ..+.|.+||+ .+++....+ ..+. +..+.+ +|+|.+|++++. +.|.
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~--~t~~~v~~i--~~~~-p~~ia~-----spdg~~l~v~n~-~~v~ 328 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT--KTKQRVARI--PGRD-ALSMTI-----DQQRNLMLTLDG-GNVN 328 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET--TTTEEEEEE--ECTT-CCEEEE-----ETTTTEEEEECS-SCEE
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEEC--CCCcEEEEE--ecCC-eeEEEE-----CCCCCEEEEeCC-CeEE
Confidence 89999888887543 1348999998 555544333 2344 555555 899999998887 9999
Q ss_pred EEECCCC--CccC
Q 036605 232 SWDLKTV--SQDE 242 (340)
Q Consensus 232 vwd~~~~--~~~~ 242 (340)
+||..++ +.+.
T Consensus 329 v~D~~t~~l~~~~ 341 (361)
T 2oiz_A 329 VYDISQPEPKLLR 341 (361)
T ss_dssp EEECSSSSCEEEE
T ss_pred EEECCCCcceeeE
Confidence 9999987 5544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-12 Score=112.28 Aligned_cols=202 Identities=13% Similarity=0.113 Sum_probs=139.1
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC----C
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN----G 95 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----g 95 (340)
+...+.+++|+|+++ +++++..++.|.+||..+++....... +...+.+++|+++++++++...+ +
T Consensus 43 ~~~~~~~~~~~~~g~---------l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~i~~~~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQ---------LFLLDVFEGNIFKINPETKEIKRPFVS-HKANPAAIKIHKDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp SCCCEEEEEECTTSC---------EEEEETTTCEEEEECTTTCCEEEEEEC-SSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred cCccccCcEECCCCC---------EEEEECCCCEEEEEeCCCCcEEEEeeC-CCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence 445678999999999 888899999999999988876544434 66789999999999877776666 6
Q ss_pred cEEEEeCCCCeEEEEee--cCCCCeeEEEEccCCCEEEEecC--------cEEEEECCCCceeEEeecCCCCeEEEEECC
Q 036605 96 MASEMKSEMGEVIREFK--ASEKPISSSAFLCEEKIFALASS--------EVRILSLENGEEVLKFSDDVGPLQYVSASD 165 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~--------~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 165 (340)
.|.+||..++.....+. .....+..++++|+|+++++... .|..+|..+++.. .+......+..++|+|
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 191 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALST 191 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECT
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECC
Confidence 89999998876543332 23456889999999998877542 3667776655433 3322334578899999
Q ss_pred CCCEEEEEEcCCCeEEEEEccCCCCCccCCc----eeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 166 GAKIIITAGYGEKHLQVWRCDISSKTVNKGP----ALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 166 ~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
++++++.+...++.|.+|+++. .+.....+ ............+ .+ .++|.++++...++.|.+||..
T Consensus 192 dg~~l~v~~~~~~~i~~~d~~~-~g~~~~~~~~~~~~~~~~~~~~~~i--~~-d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 192 DEKVLWVTETTANRLHRIALED-DGVTIQPFGATIPYYFTGHEGPDSC--CI-DSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp TSSEEEEEEGGGTEEEEEEECT-TSSSEEEEEEEEEEECCSSSEEEEE--EE-BTTCCEEEEEETTTEEEEECTT
T ss_pred CCCEEEEEeCCCCeEEEEEecC-CCcCcccccceEEEecCCCCCCCce--EE-CCCCCEEEEEcCCCEEEEECCC
Confidence 9987776665578999999842 12211110 0011110122222 33 6788877777778899999874
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-14 Score=132.94 Aligned_cols=158 Identities=8% Similarity=-0.006 Sum_probs=115.5
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCC----------CcEEEEEccC------CeeEEEec-CCCCCCeEEEEEe
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSN----------GDILAVDVLT------GEMKWKST-GRHPGGLAGLAFA 82 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d----------g~i~i~d~~~------~~~~~~~~-~~h~~~v~~v~~~ 82 (340)
+...+.+++|||||+ .|++++.+ ..|++||+.+ ++. ..+. . +...+..++|+
T Consensus 128 ~~~~~~~~~~spDg~---------~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~-~~~~~~~~~~S 196 (662)
T 3azo_A 128 GGLRWADPVLLPERG---------EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDD-AHRFVTGPRLS 196 (662)
T ss_dssp TCEEEEEEEEETTTT---------EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCS-CSSEECCCEEC
T ss_pred CCccccCcEECCCCC---------EEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEec-CCCcccCceEC
Confidence 567889999999998 88888776 5899999988 554 4555 4 56678889999
Q ss_pred cCCCEEEEEeCC--------CcEEEEeCC-CC---eEEEEeecCCCCeeEEEEccCCCEEEEecC----cEEEEECCCCc
Q 036605 83 KKGRSLHVVGTN--------GMASEMKSE-MG---EVIREFKASEKPISSSAFLCEEKIFALASS----EVRILSLENGE 146 (340)
Q Consensus 83 ~~~~~l~s~~~d--------g~i~~wd~~-~~---~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~----~i~i~d~~~~~ 146 (340)
|||+.|+.++.+ ..|.+||+. ++ +.......+...+..++|+|||+++++++. .|++||+.+++
T Consensus 197 pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 197 PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence 999999887755 379999998 57 444444445678899999999997766543 37788876775
Q ss_pred eeEEeecCCCC--------eEEEEECCCCCEEEEEEcCCCeEEEEEccCCCC
Q 036605 147 EVLKFSDDVGP--------LQYVSASDGAKIIITAGYGEKHLQVWRCDISSK 190 (340)
Q Consensus 147 ~~~~~~~~~~~--------v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~ 190 (340)
.......+... +..++|+|++..++++ .. +.++||.++...+
T Consensus 277 ~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~-~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 277 ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVH-GK-GAAVLGILDPESG 326 (662)
T ss_dssp EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE-BS-SSCEEEEEETTTT
T ss_pred eeecccccccccCccccccCceEeEeCCCEEEEEE-Ec-CccEEEEEECCCC
Confidence 44333322221 5678899999877774 44 8889996643443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-13 Score=114.09 Aligned_cols=183 Identities=12% Similarity=0.130 Sum_probs=139.4
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC-CCeeEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHP-GGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASE-KPISSS 121 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~i~~l 121 (340)
+|++++.++.|.+||.++|+.++++.. +. ..+.++.++|+|+.|+ +.++.|..||. +|+.+..+..+. ..+.++
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~~~~-~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~ 82 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWEYPL-EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTA 82 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEEEEC-CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred EEEeeCCCCEEEEEECCCCeEEEEeCC-CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence 799999999999999999999999987 54 4789999999999888 45778999999 899998888653 468899
Q ss_pred EEccCCCEEEEecC-c--EEEEECCCCceeEEeec------CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCc
Q 036605 122 AFLCEEKIFALASS-E--VRILSLENGEEVLKFSD------DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTV 192 (340)
Q Consensus 122 ~~~~~~~~l~~~~~-~--i~i~d~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~ 192 (340)
.+.++|+++++..+ . +..+|. +++.+.++.. +......+.+.++|.++++... ++.|..||. . ++.
T Consensus 83 ~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-~~~v~~~d~--~-G~~ 157 (276)
T 3no2_A 83 RILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA-TSEVREIAP--N-GQL 157 (276)
T ss_dssp EECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT-TTEEEEECT--T-SCE
T ss_pred EECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC-CCEEEEECC--C-CCE
Confidence 99999999988654 4 666664 6777766642 2224556778999999888555 999999997 3 544
Q ss_pred cCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 193 NKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
...+. ....+..... .+++..+++++.+++|..+|..+++.+.
T Consensus 158 ~w~~~--~~~~~~~~~~-----~~~g~~~v~~~~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 158 LNSVK--LSGTPFSSAF-----LDNGDCLVACGDAHCFVQLNLESNRIVR 200 (276)
T ss_dssp EEEEE--CSSCCCEEEE-----CTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred EEEEE--CCCCccceeE-----cCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence 33322 1222222222 5788899988888899999998877655
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-12 Score=118.71 Aligned_cols=214 Identities=7% Similarity=-0.038 Sum_probs=152.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEcc--CCeeEEEecCCCCCCeEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVL--TGEMKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~~h~~~v~~ 78 (340)
|+|+.+++++..+. ....+.++.|+||++ ++++++.++.|.+||+. +++.+.++.. . .....
T Consensus 181 viD~~t~~v~~~i~-----~g~~p~~v~~SpDGr---------~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G-~~P~~ 244 (567)
T 1qks_A 181 LIDGSTYEIKTVLD-----TGYAVHISRLSASGR---------YLFVIGRDGKVNMIDLWMKEPTTVAEIKI-G-SEARS 244 (567)
T ss_dssp EEETTTCCEEEEEE-----CSSCEEEEEECTTSC---------EEEEEETTSEEEEEETTSSSCCEEEEEEC-C-SEEEE
T ss_pred EEECCCCeEEEEEe-----CCCCccceEECCCCC---------EEEEEcCCCeEEEEECCCCCCcEeEEEec-C-CCCce
Confidence 47888898888876 224567999999999 89999999999999995 7777777764 2 34689
Q ss_pred EEEe----cCCCEEEEEeC-CCcEEEEeCCCCeEEEEeecC-----------CCCeeEEEEccCCCEEEEe---cCcEEE
Q 036605 79 LAFA----KKGRSLHVVGT-NGMASEMKSEMGEVIREFKAS-----------EKPISSSAFLCEEKIFALA---SSEVRI 139 (340)
Q Consensus 79 v~~~----~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~-----------~~~i~~l~~~~~~~~l~~~---~~~i~i 139 (340)
++|+ |||+++++++. ++.|.++|..+.+.+..+... ...+..+..++++..++.. ++.|.+
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 9999 69999888765 489999999999988775421 1257788889987776553 355999
Q ss_pred EECCCCcee--EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCcee--eecCCCeeeeeecCCCC
Q 036605 140 LSLENGEEV--LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPAL--SMRHSPVAIDCKNSPNG 215 (340)
Q Consensus 140 ~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 215 (340)
+|....+.+ ..+ ........+.|+|+++++++++..++.|.++|+ .+++....... ...|+.....+ + +
T Consensus 325 vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~--~t~kl~~~i~vgg~~Phpg~g~~~---~-~ 397 (567)
T 1qks_A 325 VDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDT--KEGKLVAIEDTGGQTPHPGRGANF---V-H 397 (567)
T ss_dssp EETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET--TTTEEEEEEECSSSSBCCTTCEEE---E-E
T ss_pred EecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEEC--CCCcEEEEEeccCcCCCCccceee---E-C
Confidence 998876433 222 233456788999999999998877899999998 45443332221 11233222211 1 5
Q ss_pred CCCCEEE-EEe-CCCcEEEEECCC
Q 036605 216 EDGTVIL-AVA-ESGVAYSWDLKT 237 (340)
Q Consensus 216 ~~~~~l~-~~s-~dg~i~vwd~~~ 237 (340)
|++..++ +.. .++.|.++|..+
T Consensus 398 p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 398 PTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCCcEEEeCCCCCCeEEEecCCC
Confidence 6644444 443 468999999886
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-13 Score=118.65 Aligned_cols=181 Identities=19% Similarity=0.161 Sum_probs=121.6
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCC---C--cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC---
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSN---G--DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN--- 94 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~d---g--~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d--- 94 (340)
.+.+++|||||+ +|+..+.+ + .|++|++.+++...... +.. +..++|+|||+.|+.++.+
T Consensus 60 ~~~~~~~SpDg~---------~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~--~~~-~~~~~wspdg~~l~~~~~~~~~ 127 (347)
T 2gop_A 60 NATMPRISPDGK---------KIAFMRANEEKKVSEIWVADLETLSSKKILE--AKN-IRSLEWNEDSRKLLIVGFKRRE 127 (347)
T ss_dssp SCEEEEECTTSS---------EEEEEEEETTTTEEEEEEEETTTTEEEEEEE--ESE-EEEEEECTTSSEEEEEEECCCC
T ss_pred cCCCeEECCCCC---------EEEEEEeccCCCcceEEEEECCCCceEEEEc--CCC-ccceeECCCCCEEEEEEccCCC
Confidence 577899999998 78776643 3 48888998887554444 334 9999999999988887632
Q ss_pred ------------------------CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--------C-c--EEE
Q 036605 95 ------------------------GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--------S-E--VRI 139 (340)
Q Consensus 95 ------------------------g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--------~-~--i~i 139 (340)
..|.+||+.+++.+..+.. . .+..++|+|+| +++++. . . |++
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~ 204 (347)
T 2gop_A 128 DEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYI 204 (347)
T ss_dssp ---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEE
T ss_pred cCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEE
Confidence 5789999999887455554 3 78899999999 766642 1 3 566
Q ss_pred EECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCC-------CeEEEEEccCCCCCccCCceeeecCCCeeee-eec
Q 036605 140 LSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGE-------KHLQVWRCDISSKTVNKGPALSMRHSPVAID-CKN 211 (340)
Q Consensus 140 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 211 (340)
+| +++ ...+..+ ..+..+ +|+|++|+..+..+ ..|.+|| +++...... .+...+.. +
T Consensus 205 ~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d----~~~~~~l~~---~~~~~~~~~~-- 269 (347)
T 2gop_A 205 WE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD----GKEVMGILD---EVDRGVGQAK-- 269 (347)
T ss_dssp EE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC----SSCEEESST---TCCSEEEEEE--
T ss_pred eC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC----CCceEeccc---cCCcccCCcc--
Confidence 66 543 4444444 455444 99999988877522 3566665 222111111 22333332 3
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 212 SPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 212 ~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.| + ++ ++++++.++.++|| +.+
T Consensus 270 ~~-s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 270 IK-D-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp EE-T-TE-EEEEEEETTEEEEE-EES
T ss_pred EE-c-Cc-EEEEEecCCcEEEE-EcC
Confidence 55 6 77 88899999999999 874
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-13 Score=110.63 Aligned_cols=171 Identities=13% Similarity=0.113 Sum_probs=132.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+||.++|+.+.++... ....+.+++++|+|+ +|+ +.++.|..||. +|+.++.+.......+.++.
T Consensus 19 ~~d~~tG~~~w~~~~~---~~~~~~~~~~~pdG~---------ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~ 83 (276)
T 3no2_A 19 IINKDTKEIVWEYPLE---KGWECNSVAATKAGE---------ILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTAR 83 (276)
T ss_dssp EEETTTTEEEEEEECC---TTCCCCEEEECTTSC---------EEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEE
T ss_pred EEECCCCeEEEEeCCC---ccCCCcCeEECCCCC---------EEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccE
Confidence 5888999999888722 125688999999999 777 45778999998 89999999863345788999
Q ss_pred EecCCCEEEEEeC-CCcEEEEeCCCCeEEEEeecCC------CCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEe
Q 036605 81 FAKKGRSLHVVGT-NGMASEMKSEMGEVIREFKASE------KPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKF 151 (340)
Q Consensus 81 ~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~------~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~ 151 (340)
+.++|+.+++.+. ++.|..+|. +|+.+..+.... .....+++.++|.++++.. +.|.+||.. |+.+.++
T Consensus 84 ~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~ 161 (276)
T 3no2_A 84 ILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSV 161 (276)
T ss_dssp ECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred ECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEE
Confidence 9999999999887 788888886 688777765321 2345677899999998854 449999998 9888888
Q ss_pred ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCc
Q 036605 152 SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTV 192 (340)
Q Consensus 152 ~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~ 192 (340)
... ..+..+.+.+++..++++.. ++.|..+|. .+++.
T Consensus 162 ~~~-~~~~~~~~~~~g~~~v~~~~-~~~v~~~d~--~tG~~ 198 (276)
T 3no2_A 162 KLS-GTPFSSAFLDNGDCLVACGD-AHCFVQLNL--ESNRI 198 (276)
T ss_dssp ECS-SCCCEEEECTTSCEEEECBT-TSEEEEECT--TTCCE
T ss_pred ECC-CCccceeEcCCCCEEEEeCC-CCeEEEEeC--cCCcE
Confidence 654 34567788899988888655 778888886 44544
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-13 Score=115.54 Aligned_cols=206 Identities=12% Similarity=0.042 Sum_probs=139.0
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCC------------------------CcEEEEEccCCeeEEEecCCCCCCe
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSN------------------------GDILAVDVLTGEMKWKSTGRHPGGL 76 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d------------------------g~i~i~d~~~~~~~~~~~~~h~~~v 76 (340)
-..+.+++++|+|+ ++++...+ +.|.+||..+++....+...+-...
T Consensus 23 l~~v~~va~d~~G~---------l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p 93 (329)
T 3fvz_A 23 PGQVSGVALDSKNN---------LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLP 93 (329)
T ss_dssp CSCEEEEEECTTCC---------EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSE
T ss_pred cCCceEEEECCCCC---------EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCc
Confidence 36799999999999 88887777 4799999998988776654355688
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCe-EEEEee---------cCCCCeeEEEEcc-CCCEEEEec---CcEEEEEC
Q 036605 77 AGLAFAKKGRSLHVVGTNGMASEMKSEMGE-VIREFK---------ASEKPISSSAFLC-EEKIFALAS---SEVRILSL 142 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~---------~~~~~i~~l~~~~-~~~~l~~~~---~~i~i~d~ 142 (340)
..++++++|+.+++...++.|++||..... .+..+. .+......++++| ++.++++.. +.|++||
T Consensus 94 ~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~- 172 (329)
T 3fvz_A 94 HGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS- 172 (329)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred eEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence 999999999987777778999999986442 344442 2334678999999 788777753 3399999
Q ss_pred CCCceeEEeec----------CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecC
Q 036605 143 ENGEEVLKFSD----------DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNS 212 (340)
Q Consensus 143 ~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
.+++.+..+.. +......++++|++..|+.+...++.|++|+. .+++....+... .+......+ .
T Consensus 173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~--~~G~~~~~~~~~-~~~~~~~~~--~ 247 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT--DTKEFVREIKHA-SFGRNVFAI--S 247 (329)
T ss_dssp TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEET--TTCCEEEEECCT-TTTTCEEEE--E
T ss_pred CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEEC--CCCcEEEEEecc-ccCCCccee--e
Confidence 56666666632 12347899999994456665666899999998 334332222100 111222222 2
Q ss_pred CCCC------CCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 213 PNGE------DGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 213 ~~~~------~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+ +| ++..+++...+..|++|+..+++.+.
T Consensus 248 ~-~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~ 282 (329)
T 3fvz_A 248 Y-IPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIID 282 (329)
T ss_dssp E-ETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEE
T ss_pred e-cCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEE
Confidence 2 34 22222233345589999988776554
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=125.70 Aligned_cols=212 Identities=8% Similarity=-0.031 Sum_probs=136.2
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEE---
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAG--- 78 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~--- 78 (340)
||+.+|+...... ++.....++.|+|+++ +|+.++.++.|++||+.+++....+.. +.+....
T Consensus 65 ~d~~~~~~~~l~~----~~~~~~~~~~~spdg~---------~l~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~g~~ 130 (396)
T 3c5m_A 65 LNLETQQAVQLTE----GKGDNTFGGFISTDER---------AFFYVKNELNLMKVDLETLEEQVIYTV-DEEWKGYGTW 130 (396)
T ss_dssp EETTTTEEEECCC----SSCBCTTTCEECTTSS---------EEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEEE
T ss_pred EECCCCcEEEeec----CCCCccccceECCCCC---------EEEEEEcCCcEEEEECCCCCcEEEEec-ccccCCCCCE
Confidence 5666665443221 2222333478999999 899998899999999998876554443 3332222
Q ss_pred ----------------EEEecCCCEEEEE-----eCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEcc-CCCEEEEe-c-
Q 036605 79 ----------------LAFAKKGRSLHVV-----GTNGMASEMKSEMGEVIREFKASEKPISSSAFLC-EEKIFALA-S- 134 (340)
Q Consensus 79 ----------------v~~~~~~~~l~s~-----~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~-~- 134 (340)
+.|+|+++.++.+ ..+..|.+||+.+++..... .+...+..+.|+| ++..++.. .
T Consensus 131 l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~ 209 (396)
T 3c5m_A 131 VANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEG 209 (396)
T ss_dssp EECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECS
T ss_pred EEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecC
Confidence 3456777665543 35568999999988765444 4566788999999 78766542 1
Q ss_pred ------CcEEEEECCCCceeEEeecC--CCCeEEEEECCCCCEEEEEEcCC----CeEEEEEccCCCCCccCCceeeecC
Q 036605 135 ------SEVRILSLENGEEVLKFSDD--VGPLQYVSASDGAKIIITAGYGE----KHLQVWRCDISSKTVNKGPALSMRH 202 (340)
Q Consensus 135 ------~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~ 202 (340)
..|++||+..++. ..+..+ ...+..+.|+|+|++|+..+..+ +.|.+||+ .+++.... . ..
T Consensus 210 ~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~--~~g~~~~l-~---~~ 282 (396)
T 3c5m_A 210 PHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP--ETLENEEV-M---VM 282 (396)
T ss_dssp CSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT--TTCCEEEE-E---EC
T ss_pred CCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC--CCCCeEEe-e---eC
Confidence 2489999876643 333323 23577899999999887765522 44999998 34432111 1 11
Q ss_pred CCeeeeeecCCCCC-CCCEEEEEe----------------CCCcEEEEECCCCCc
Q 036605 203 SPVAIDCKNSPNGE-DGTVILAVA----------------ESGVAYSWDLKTVSQ 240 (340)
Q Consensus 203 ~~~~~~~~~~~~~~-~~~~l~~~s----------------~dg~i~vwd~~~~~~ 240 (340)
+... ..| ++ ++.++++++ .++.|++||+.+++.
T Consensus 283 ~~~~----~~~-s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 283 PPCS----HLM-SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp CSEE----EEE-ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred CCCC----CCc-cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 1111 244 67 888888755 347899999887643
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-12 Score=107.61 Aligned_cols=196 Identities=7% Similarity=-0.066 Sum_probs=134.1
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASE 99 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~ 99 (340)
+.....+++|+|+++ .+++++..++.|..||..++ ...+.. +...+.+++++++|+++++...++.|.+
T Consensus 26 ~~~~~eg~~~d~~g~--------~l~~~~~~~~~i~~~~~~~~--~~~~~~-~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 26 GFTWTEGPVYVPARS--------AVIFSDVRQNRTWAWSDDGQ--LSPEMH-PSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CCSSEEEEEEEGGGT--------EEEEEEGGGTEEEEEETTSC--EEEEES-SCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCccccCCeEeCCCC--------EEEEEeCCCCEEEEEECCCC--eEEEEC-CCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 445678999999984 16788889999999999887 455555 6678999999999998777666789999
Q ss_pred EeCCCCeEEEEeecC----CCCeeEEEEccCCCEEEEec-------------------CcEEEEECCCCceeEEeecCCC
Q 036605 100 MKSEMGEVIREFKAS----EKPISSSAFLCEEKIFALAS-------------------SEVRILSLENGEEVLKFSDDVG 156 (340)
Q Consensus 100 wd~~~~~~~~~~~~~----~~~i~~l~~~~~~~~l~~~~-------------------~~i~i~d~~~~~~~~~~~~~~~ 156 (340)
||..+++........ ...+..++++|+|+++++.. +.|..++.. + .+..+..+..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~~~~~ 172 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-TLSAPIRDRV 172 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-CEEEEECCCS
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-CEEEeecCCC
Confidence 999888754433221 23467899999999888621 236666654 4 3445556667
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCc-cCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTV-NKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
....++|+|+++.+ .+...++.|.+|+++ ..+.. .....+ .........+ .+ .++|.++++. ++.|.+|+.
T Consensus 173 ~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~-~~g~~~~~~~~~-~~~~~~p~~i--~~-d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 173 KPNGLAFLPSGNLL-VSDTGDNATHRYCLN-ARGETEYQGVHF-TVEPGKTDGL--RV-DAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SEEEEEECTTSCEE-EEETTTTEEEEEEEC-SSSCEEEEEEEE-CCSSSCCCSE--EE-BTTSCEEEEE--TTEEEEECT
T ss_pred CCccEEECCCCCEE-EEeCCCCeEEEEEEC-CCCcCcCCCeEe-eCCCCCCCeE--EE-CCCCCEEEEc--CCeEEEECC
Confidence 78999999999988 445558999999984 12222 001111 0111111111 22 6788766555 778999997
Q ss_pred C
Q 036605 236 K 236 (340)
Q Consensus 236 ~ 236 (340)
.
T Consensus 245 ~ 245 (296)
T 3e5z_A 245 D 245 (296)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-13 Score=128.09 Aligned_cols=203 Identities=11% Similarity=0.003 Sum_probs=135.8
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCC-----cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNG-----DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN 94 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d 94 (340)
+...+..++|||||+ +||.+..++ .|++||+.+++....... + ..+..++|+|||+.|+.++.+
T Consensus 123 ~~~~~~~~~~SPDg~---------~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~-~~~~~~~wspDg~~l~~~~~~ 191 (710)
T 2xdw_A 123 GTVALRGYAFSEDGE---------YFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-R-VKFSCMAWTHDGKGMFYNAYP 191 (710)
T ss_dssp SCEEEEEEEECTTSS---------EEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-E-ECSCCEEECTTSSEEEEEECC
T ss_pred CCEEEEEEEECCCCC---------EEEEEEcCCCCceEEEEEEECCCCCCCccccc-C-cccceEEEEeCCCEEEEEEEC
Confidence 334688999999998 788765543 899999999986653322 2 236789999999999998877
Q ss_pred Cc----------------EEEEeCCCCeE--EEEeec--CCCCeeEEEEccCCCEEEEe-------cCcEEEEECCC---
Q 036605 95 GM----------------ASEMKSEMGEV--IREFKA--SEKPISSSAFLCEEKIFALA-------SSEVRILSLEN--- 144 (340)
Q Consensus 95 g~----------------i~~wd~~~~~~--~~~~~~--~~~~i~~l~~~~~~~~l~~~-------~~~i~i~d~~~--- 144 (340)
+. |++|++.++.. ...+.. +...+..+.|+|||++|+.. ...|++||+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred CccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence 65 99999988752 122222 34457889999999998763 23499999986
Q ss_pred ---Cc-eeEEeecCCCCeEEEEECCCCCEEEEEEcCC---CeEEEEEccCCCCCccCCceeeecCCC--eeeeeecCCCC
Q 036605 145 ---GE-EVLKFSDDVGPLQYVSASDGAKIIITAGYGE---KHLQVWRCDISSKTVNKGPALSMRHSP--VAIDCKNSPNG 215 (340)
Q Consensus 145 ---~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 215 (340)
+. ....+..+...+.. .|+++|..|+..+..+ ..|.+||+ .++... .......+.. .+..+ .+ .
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~--~~~~~~-~~~~l~~~~~~~~~~~~--~~-~ 344 (710)
T 2xdw_A 272 GITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDF--TDPEES-KWKVLVPEHEKDVLEWV--AC-V 344 (710)
T ss_dssp SSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEET--TSCCGG-GCEEEECCCSSCEEEEE--EE-E
T ss_pred ccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeC--CCCCcc-cceeccCCCCCCeEEEE--EE-E
Confidence 43 35666666666554 5888988887766533 36888887 333210 0111113322 33333 34 4
Q ss_pred CCCCEEEEEeCCCc--EEEEECCCCCc
Q 036605 216 EDGTVILAVAESGV--AYSWDLKTVSQ 240 (340)
Q Consensus 216 ~~~~~l~~~s~dg~--i~vwd~~~~~~ 240 (340)
+++.++++...+|. |++|++.+++.
T Consensus 345 ~~~~lv~~~~~~g~~~l~~~~~~~g~~ 371 (710)
T 2xdw_A 345 RSNFLVLCYLHDVKNTLQLHDLATGAL 371 (710)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred cCCEEEEEEEECCEEEEEEEECCCCCE
Confidence 56778888888884 56677755543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-12 Score=123.29 Aligned_cols=217 Identities=12% Similarity=0.091 Sum_probs=140.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCc----------------EEEEEccCCee
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGD----------------ILAVDVLTGEM 64 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~----------------i~i~d~~~~~~ 64 (340)
|||+.+|+...... ....+..++|+||++ .|+.++.++. |++|++.+++.
T Consensus 155 v~d~~tg~~~~~~~-----~~~~~~~~~wspDg~---------~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~ 220 (710)
T 2xdw_A 155 FMKVDGAKELPDVL-----ERVKFSCMAWTHDGK---------GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS 220 (710)
T ss_dssp EEETTTTEEEEEEE-----EEECSCCEEECTTSS---------EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG
T ss_pred EEECCCCCCCcccc-----cCcccceEEEEeCCC---------EEEEEEECCccccccccccccCCCCEEEEEECCCCcc
Confidence 57888888765322 112367899999998 7888887766 99999988762
Q ss_pred --EEEecC-CCCCCeEEEEEecCCCEEEEEeC-----CCcEEEEeCCC------Ce-EEEEeecCCCCeeEEEEccCCCE
Q 036605 65 --KWKSTG-RHPGGLAGLAFAKKGRSLHVVGT-----NGMASEMKSEM------GE-VIREFKASEKPISSSAFLCEEKI 129 (340)
Q Consensus 65 --~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~-----dg~i~~wd~~~------~~-~~~~~~~~~~~i~~l~~~~~~~~ 129 (340)
...+.. .|...+..+.|+|||++|+.++. +..|.+||+.+ +. ....+..+...+.. .|+|+|..
T Consensus 221 ~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~ 299 (710)
T 2xdw_A 221 EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTV 299 (710)
T ss_dssp GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTE
T ss_pred cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCE
Confidence 222222 15666889999999999888764 56899999976 43 34555555555544 48899887
Q ss_pred EEEecC------cEEEEECCCCc--eeEEeecCCC--CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceee
Q 036605 130 FALASS------EVRILSLENGE--EVLKFSDDVG--PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALS 199 (340)
Q Consensus 130 l~~~~~------~i~i~d~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~ 199 (340)
|+..+. .|.+||+.++. ....+..|.. .+..+.|++++..+++... ++..+||-++...++....+.
T Consensus 300 l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~-~g~~~l~~~~~~~g~~~~~l~-- 376 (710)
T 2xdw_A 300 FTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH-DVKNTLQLHDLATGALLKIFP-- 376 (710)
T ss_dssp EEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE-TTEEEEEEEETTTCCEEEEEC--
T ss_pred EEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE-CCEEEEEEEECCCCCEEEecC--
Confidence 765322 29999998764 2345555543 5778899877766666555 876555554323443222222
Q ss_pred ecCCCeeeeeecCCCCCCCCEEEEE-e---CCCcEEEEECCCCC
Q 036605 200 MRHSPVAIDCKNSPNGEDGTVILAV-A---ESGVAYSWDLKTVS 239 (340)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~l~~~-s---~dg~i~vwd~~~~~ 239 (340)
.+...+..+ .+ ++++..++.. + ..+.|++||+.+++
T Consensus 377 -~~~~~v~~~--~~-s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 377 -LEVGSVVGY--SG-QKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp -CCSSEEEEE--EC-CTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred -CCCceEEEE--ec-CCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 123333333 44 5677665533 2 34789999998765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-12 Score=107.72 Aligned_cols=200 Identities=11% Similarity=0.016 Sum_probs=135.4
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMK 101 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd 101 (340)
..+.+++++++++ ++++.. ++.|.+||...... ..+.......+.+++++++|+.+++...++.|.+|+
T Consensus 67 ~~p~~i~~~~~g~---------l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 135 (270)
T 1rwi_B 67 YQPQGLAVDGAGT---------VYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLA 135 (270)
T ss_dssp CSCCCEEECTTCC---------EEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred CCcceeEECCCCC---------EEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEE
Confidence 4677899999988 666666 88999999876543 333321335789999999998777666778999998
Q ss_pred CCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCe
Q 036605 102 SEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKH 179 (340)
Q Consensus 102 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~ 179 (340)
..+.............+..++++++++++++.. +.|.+||............+...+..++++++|..+++ ...++.
T Consensus 136 ~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~-~~~~~~ 214 (270)
T 1rwi_B 136 AGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVT-EHNTNQ 214 (270)
T ss_dssp TTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEE-ETTTSC
T ss_pred CCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEE-ECCCCc
Confidence 665543322222334678999999998776643 45999998876544333333367889999999955555 544889
Q ss_pred EEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 036605 180 LQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 180 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
|.+|+.. ...... . ...+......+ .+ .++|..+++...++.|++|++...+..
T Consensus 215 v~~~~~~--~~~~~~-~--~~~~~~~p~~i--~~-~~~g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 215 VVKLLAG--STTSTV-L--PFTGLNTPLAV--AV-DSDRTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp EEEECTT--CSCCEE-C--CCCSCSCEEEE--EE-CTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred EEEEcCC--CCccee-e--ccCCCCCceeE--EE-CCCCCEEEEECCCCEEEEEcCCCcccc
Confidence 9999973 222111 1 11111222223 33 688888888889999999998765543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-12 Score=108.04 Aligned_cols=215 Identities=8% Similarity=-0.037 Sum_probs=146.5
Q ss_pred CccCCCCceeeeeeC--CCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEE
Q 036605 1 IWSTNDGSLLAEWKQ--PDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~~~~~~~~--~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~ 78 (340)
+||+.++++...+.. ...........+.+. +++ ++++...++.|.+||..+++.+.++. .......
T Consensus 21 ~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~---------lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~ 88 (328)
T 3dsm_A 21 YYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGI---------GWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRY 88 (328)
T ss_dssp EEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTE---------EEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEE
T ss_pred EEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCE---------EEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcE
Confidence 367777776654310 001223456677774 345 67777778999999999999888885 3467899
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCC-----CCeeEEEEccCCCEEEEe---cCcEEEEECCCCceeE
Q 036605 79 LAFAKKGRSLHVVG-TNGMASEMKSEMGEVIREFKASE-----KPISSSAFLCEEKIFALA---SSEVRILSLENGEEVL 149 (340)
Q Consensus 79 v~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~-----~~i~~l~~~~~~~~l~~~---~~~i~i~d~~~~~~~~ 149 (340)
+++++++ .|+.+. .++.|.+||+.+++....+.... .....+++ .+++.+++. ++.|.++|+.+++.+.
T Consensus 89 i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 89 IHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVD 166 (328)
T ss_dssp EEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred EEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence 9999888 566655 78999999999999877766433 14567777 444444442 3459999999998877
Q ss_pred EeecCCCCeEEEEECCCCCEEEEEEcCC----------CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCC
Q 036605 150 KFSDDVGPLQYVSASDGAKIIITAGYGE----------KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGT 219 (340)
Q Consensus 150 ~~~~~~~~v~~~~~s~~~~~l~s~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (340)
.+... .....+.++|+|++++++.. + +.|.++|. .+++....+.+..+..+..+.+ ++++.
T Consensus 167 ~i~~g-~~p~~i~~~~dG~l~v~~~~-~~~~~~~~~~~~~v~~id~--~t~~v~~~~~~~~g~~p~~la~-----~~d~~ 237 (328)
T 3dsm_A 167 ELTIG-IQPTSLVMDKYNKMWTITDG-GYEGSPYGYEAPSLYRIDA--ETFTVEKQFKFKLGDWPSEVQL-----NGTRD 237 (328)
T ss_dssp EEECS-SCBCCCEECTTSEEEEEBCC-BCTTCSSCBCCCEEEEEET--TTTEEEEEEECCTTCCCEEEEE-----CTTSC
T ss_pred EEEcC-CCccceEEcCCCCEEEEECC-CccCCccccCCceEEEEEC--CCCeEEEEEecCCCCCceeEEE-----ecCCC
Confidence 77543 34578899999986666433 4 78999997 4444332222211223444444 78888
Q ss_pred EEEEEeCCCcEEEEECCCCCc
Q 036605 220 VILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 220 ~l~~~s~dg~i~vwd~~~~~~ 240 (340)
+|+++.. .|++||..+++.
T Consensus 238 ~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 238 TLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp EEEEESS--SEEEEETTCSSC
T ss_pred EEEEEcc--EEEEEECCCCce
Confidence 8888765 899999987664
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.1e-12 Score=114.66 Aligned_cols=188 Identities=15% Similarity=0.022 Sum_probs=140.9
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC--CCeEEEEeecCCCCeeEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSE--MGEVIREFKASEKPISSS 121 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~i~~l 121 (340)
++++...++.|.++|..+++.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++.+..+.... ....+
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~i 245 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSI 245 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCcee
Confidence 778888899999999999998888874 3367799999999999999999999999996 888887776543 46789
Q ss_pred EEc----cCCCEEEEec---CcEEEEECCCCceeEEeecC----------C-CCeEEEEECCCCCEEEEEEcCCCeEEEE
Q 036605 122 AFL----CEEKIFALAS---SEVRILSLENGEEVLKFSDD----------V-GPLQYVSASDGAKIIITAGYGEKHLQVW 183 (340)
Q Consensus 122 ~~~----~~~~~l~~~~---~~i~i~d~~~~~~~~~~~~~----------~-~~v~~~~~s~~~~~l~s~~~~d~~i~iw 183 (340)
+|+ |||+++++++ +.+.++|..+.+.+..+... . ..+..+.+++++..++.....+|.|.++
T Consensus 246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v 325 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 325 (567)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence 999 6999998744 55999999999888766421 1 2577888899887777766768999999
Q ss_pred EccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEe-CCCcEEEEECCCCCcc
Q 036605 184 RCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVA-ESGVAYSWDLKTVSQD 241 (340)
Q Consensus 184 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s-~dg~i~vwd~~~~~~~ 241 (340)
|.. ......... +.......+. .| ++++.++++++ .++.|.++|+.+++..
T Consensus 326 d~~--~~~~~~v~~--i~~~~~~~d~--~~-~pdgr~~~va~~~sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 326 DYT--DLNNLKTTE--ISAERFLHDG--GL-DGSHRYFITAANARNKLVVIDTKEGKLV 377 (567)
T ss_dssp ETT--CSSEEEEEE--EECCSSEEEE--EE-CTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred ecC--CCccceeee--eeccccccCc--eE-CCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence 973 322111111 1222222233 34 78999887665 5788999999986544
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-12 Score=107.28 Aligned_cols=208 Identities=13% Similarity=0.123 Sum_probs=137.2
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC---CCCCCeEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG---RHPGGLAG 78 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---~h~~~v~~ 78 (340)
||..++ ...+. .+...+.+++|+|+++ ++++...++.|.+||..+++....... .....++.
T Consensus 55 ~~~~~~--~~~~~----~~~~~~~~l~~~~dg~---------l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 119 (296)
T 3e5z_A 55 WSDDGQ--LSPEM----HPSHHQNGHCLNKQGH---------LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPND 119 (296)
T ss_dssp EETTSC--EEEEE----SSCSSEEEEEECTTCC---------EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCC
T ss_pred EECCCC--eEEEE----CCCCCcceeeECCCCc---------EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCC
Confidence 555555 44454 3456789999999999 777777778999999988875433221 11235678
Q ss_pred EEEecCCCEEEEE----e-------------CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEE
Q 036605 79 LAFAKKGRSLHVV----G-------------TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRI 139 (340)
Q Consensus 79 v~~~~~~~~l~s~----~-------------~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i 139 (340)
++++|+|+.+++. . ..+.|..++.. ++. ..+..+......++|+|+++.+++.. +.|++
T Consensus 120 i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~ 197 (296)
T 3e5z_A 120 VCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHR 197 (296)
T ss_dssp EEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEE
Confidence 9999999988763 2 13467777765 543 33444556678999999999885543 34999
Q ss_pred EECC-CCce---eEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCC
Q 036605 140 LSLE-NGEE---VLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNG 215 (340)
Q Consensus 140 ~d~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
|++. +++. ...+..+...+..++++++|...++. ++.|.+|+. .++....+. .+.. ...+ .+..
T Consensus 198 ~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~~v~~~~~---~g~~~~~~~---~~~~-~~~~--~f~~ 265 (296)
T 3e5z_A 198 YCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GDGVHVLTP---DGDELGRVL---TPQT-TSNL--CFGG 265 (296)
T ss_dssp EEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TTEEEEECT---TSCEEEEEE---CSSC-CCEE--EEES
T ss_pred EEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CCeEEEECC---CCCEEEEEE---CCCC-ceeE--EEEC
Confidence 9986 4543 23333345567789999999866654 688999996 243332222 1111 2233 3325
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCC
Q 036605 216 EDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 216 ~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
+++..|++++.++ +.-++..+..
T Consensus 266 ~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 266 PEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp TTSCEEEEEETTE-EEEEECSCCB
T ss_pred CCCCEEEEEcCCe-EEEEEccccc
Confidence 7888888888765 6666766544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.9e-12 Score=104.38 Aligned_cols=197 Identities=14% Similarity=0.142 Sum_probs=135.4
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-----CCCCCeEEEEEe-cCCCEEEEEeC
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-----RHPGGLAGLAFA-KKGRSLHVVGT 93 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-----~h~~~v~~v~~~-~~~~~l~s~~~ 93 (340)
+-....+++++|+++ ++++...++.|.+||.. ++....+.. .+...+.+++++ +++..+++...
T Consensus 28 ~~~~p~~v~~~~~g~---------l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~ 97 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND---------IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS 97 (286)
T ss_dssp CBSCEEEEEECTTCC---------EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG
T ss_pred ccCCCceEEECCCCC---------EEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC
Confidence 446789999999999 88888899999999987 555655532 244578999995 56655555433
Q ss_pred -CCcEEEEeCCCCeEEEEeec-CCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEee--cCCCCeEEEEECCCC
Q 036605 94 -NGMASEMKSEMGEVIREFKA-SEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFS--DDVGPLQYVSASDGA 167 (340)
Q Consensus 94 -dg~i~~wd~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~s~~~ 167 (340)
++.|.+|| .+++.+..+.. +...+..++++|+++++++.. +.|.+||.. ++.+..+. .+...+..++++++|
T Consensus 98 ~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g 175 (286)
T 1q7f_A 98 PTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQ 175 (286)
T ss_dssp GGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSS
T ss_pred CCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCC
Confidence 78999999 56776666643 335688999999999777743 449999964 55555554 344568999999999
Q ss_pred CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCC-cEEEEECC
Q 036605 168 KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESG-VAYSWDLK 236 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg-~i~vwd~~ 236 (340)
..+++ ...++.|.+|+.. +.....+.. .++......+ ++ +++|.++++...++ .|.+|+..
T Consensus 176 ~l~v~-~~~~~~i~~~~~~---g~~~~~~~~-~g~~~~p~~i--~~-d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 176 EIFIS-DNRAHCVKVFNYE---GQYLRQIGG-EGITNYPIGV--GI-NSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp EEEEE-EGGGTEEEEEETT---CCEEEEESC-TTTSCSEEEE--EE-CTTCCEEEEECSSSCEEEEECTT
T ss_pred CEEEE-ECCCCEEEEEcCC---CCEEEEEcc-CCccCCCcEE--EE-CCCCCEEEEeCCCCEEEEEECCC
Confidence 76555 4448999999962 222111110 0111122222 33 68888888887775 99999953
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-12 Score=108.94 Aligned_cols=195 Identities=9% Similarity=-0.035 Sum_probs=123.8
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcC---------------------------CCcE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTS---------------------------NGDI 54 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~---------------------------dg~i 54 (340)
||+.+|+...... .. . +.+++|+|+++ .|+.++. ...|
T Consensus 90 ~~~~~g~~~~l~~----~~-~-~~~~~wspdg~---------~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 90 ADLETLSSKKILE----AK-N-IRSLEWNEDSR---------KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EETTTTEEEEEEE----ES-E-EEEEEECTTSS---------EEEEEEECCCC---------CCCC---------CEEEE
T ss_pred EECCCCceEEEEc----CC-C-ccceeECCCCC---------EEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence 5666666554443 22 3 89999999998 7777653 2579
Q ss_pred EEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCC-------cEEEEeCCCCeEEEEeecCCCCeeEEEEccCC
Q 036605 55 LAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG-------MASEMKSEMGEVIREFKASEKPISSSAFLCEE 127 (340)
Q Consensus 55 ~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg-------~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~ 127 (340)
++||+.+++....+.. . .+..++|+|+| .++++..++ ...+|.+.+++.. .+..+ ..+..+ +|+|
T Consensus 155 ~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~-~~~~~~--spdg 226 (347)
T 2gop_A 155 WIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK-VSFYAV--DSDG 226 (347)
T ss_dssp EEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE-ESEEEE--EECS
T ss_pred EEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-EeccC-cceeeE--CCCC
Confidence 9999998876455554 2 78899999999 877776542 3344433355543 33333 444444 9999
Q ss_pred CEEEEec----------CcEEEEECCCCceeEEeecCCCCeEE-EEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCc
Q 036605 128 KIFALAS----------SEVRILSLENGEEVLKFSDDVGPLQY-VSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGP 196 (340)
Q Consensus 128 ~~l~~~~----------~~i~i~d~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~ 196 (340)
+.++..+ ..|++|| +++.......+...+.. +.|+ ++ .++++.. ++.++|| ++ .++. ..
T Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~-~~~~~l~-~~--~g~~-~~- 296 (347)
T 2gop_A 227 ERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFE-EGSVNLY-IW--DGEI-KP- 296 (347)
T ss_dssp SCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEE-TTEEEEE-EE--SSSE-EE-
T ss_pred CEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEec-CCcEEEE-Ec--CCce-EE-
Confidence 9876532 2388888 55444334555677876 8999 88 7777666 8999999 95 3322 11
Q ss_pred eeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcE-EEEECC
Q 036605 197 ALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVA-YSWDLK 236 (340)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i-~vwd~~ 236 (340)
...+...+..+ .+ ++ ..+++++.++.. .+|.+.
T Consensus 297 --~~~~~~~v~~~--~~-s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 297 --IAKGRHWIMGF--DV-DE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp --EECSSSEEEEE--EE-SS--SEEEEEECSSSCCEEEEES
T ss_pred --EecCCCeEEee--ee-eC--cEEEEEcCCCChHHheEeC
Confidence 11334444444 44 55 567777777654 666654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.4e-11 Score=101.92 Aligned_cols=216 Identities=13% Similarity=0.033 Sum_probs=134.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEc----------CCCcEEEEEccCCeeEEEecC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGT----------SNGDILAVDVLTGEMKWKSTG 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~----------~dg~i~i~d~~~~~~~~~~~~ 70 (340)
+||+.+++++..+.. ...+ .+++|||++ +|+++. .++.|.+||..+.+.+..+.-
T Consensus 51 v~D~~t~~~~~~i~~----g~~p--~i~~spDg~---------~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~ 115 (373)
T 2mad_H 51 VLDAGSGSILGHVNG----GFLP--NPVAAHSGS---------EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL 115 (373)
T ss_pred EEECCCCeEEEEecC----CCCC--CeEECCCCC---------EEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC
Confidence 478888888877662 1223 899999998 777765 367899999998887766542
Q ss_pred C---C---CCCeEEEEEecCCCEEEEEeC--CCcEEEEeCCCCeEEEE-eecCCCCee--------EEEEccCCCEEE--
Q 036605 71 R---H---PGGLAGLAFAKKGRSLHVVGT--NGMASEMKSEMGEVIRE-FKASEKPIS--------SSAFLCEEKIFA-- 131 (340)
Q Consensus 71 ~---h---~~~v~~v~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~-~~~~~~~i~--------~l~~~~~~~~l~-- 131 (340)
. + ......++|+|||++|+++.. ++.|.++| .+++.+.. +..... +. -+.++++|..++
T Consensus 116 ~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~dg~~~~vd 193 (373)
T 2mad_H 116 PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC-YHIHPGAPSTFYLLCAQGGLAKTD 193 (373)
T ss_pred CCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce-EEEEeCCCceEEEEcCCCCEEEEE
Confidence 1 0 123458999999999999874 47899999 99988777 543211 00 011222222111
Q ss_pred -------------------------------------EecCcEEEEECCCCc--eeEEeec----------CCCCeEEEE
Q 036605 132 -------------------------------------LASSEVRILSLENGE--EVLKFSD----------DVGPLQYVS 162 (340)
Q Consensus 132 -------------------------------------~~~~~i~i~d~~~~~--~~~~~~~----------~~~~v~~~~ 162 (340)
+.++.+.+.|+..+. .+..+.. .......+.
T Consensus 194 ~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~ 273 (373)
T 2mad_H 194 HAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA 273 (373)
T ss_pred CCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE
Confidence 111224444543321 1111110 012233477
Q ss_pred ECCCCCEEEEEEcC---------CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCC-EEEEEe-CCCcEE
Q 036605 163 ASDGAKIIITAGYG---------EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGT-VILAVA-ESGVAY 231 (340)
Q Consensus 163 ~s~~~~~l~s~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~s-~dg~i~ 231 (340)
+++++..++.+... .+.|.++|. .+.+....+ ..+..+..+.+ ++||. +++++. .++.|.
T Consensus 274 ~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~--~t~~vv~~i--~~g~~p~~i~~-----s~Dg~~~l~v~~~~~~~V~ 344 (373)
T 2mad_H 274 YLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG--LVGQTSSQI--SLGHDVDAISV-----AQDGGPDLYALSAGTEVLH 344 (373)
T ss_pred ECCCCCEEEEEeccCCcccccCCCCeEEEEEC--CCCEEEEEE--ECCCCcCeEEE-----CCCCCeEEEEEcCCCCeEE
Confidence 89998888875531 357888887 455443333 33555555555 89998 777777 489999
Q ss_pred EEECCCCCccC
Q 036605 232 SWDLKTVSQDE 242 (340)
Q Consensus 232 vwd~~~~~~~~ 242 (340)
+||..+++.+.
T Consensus 345 ViD~~t~~vv~ 355 (373)
T 2mad_H 345 IYDAGAGDQDQ 355 (373)
T ss_pred EEECCCCCEEe
Confidence 99999887665
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.45 E-value=8e-11 Score=100.45 Aligned_cols=168 Identities=11% Similarity=0.105 Sum_probs=115.6
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCC----CcEEEEEccCCeeEEEecC-CCCCCe
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSN----GDILAVDVLTGEMKWKSTG-RHPGGL 76 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d----g~i~i~d~~~~~~~~~~~~-~h~~~v 76 (340)
||..+++...... .+...+.+++|+|+++ ++++...+ +.|.+||..++.....+.. .+...+
T Consensus 71 ~d~~~~~~~~~~~----~~~~~~~~i~~~~dg~---------l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 71 INPETKEIKRPFV----SHKANPAAIKIHKDGR---------LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp ECTTTCCEEEEEE----CSSSSEEEEEECTTSC---------EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred EeCCCCcEEEEee----CCCCCcceEEECCCCc---------EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 6666666554433 2456799999999999 77777666 6899999988765433331 144579
Q ss_pred EEEEEecCCCEEEEEeC------CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEe---cCcEEEEECCC-Cc
Q 036605 77 AGLAFAKKGRSLHVVGT------NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALA---SSEVRILSLEN-GE 146 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~---~~~i~i~d~~~-~~ 146 (340)
.+++++|+|+.+++... .+.|..+|..+++..... .....+..++|+|+++.++.+ ++.|++||+.+ +.
T Consensus 138 ~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~ 216 (333)
T 2dg1_A 138 DDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV 216 (333)
T ss_dssp EEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred cceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc
Confidence 99999999987776543 356777887665543322 233457889999999866543 34599999864 33
Q ss_pred eeEE--------eecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 147 EVLK--------FSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 147 ~~~~--------~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
.+.. +.++ ..+..++++++|..+++... ++.|.+||.
T Consensus 217 ~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~-~~~v~~~d~ 261 (333)
T 2dg1_A 217 TIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYG-QGRVLVFNK 261 (333)
T ss_dssp SEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEET-TTEEEEECT
T ss_pred CcccccceEEEecCCC-CCCCceEECCCCCEEEEEcC-CCEEEEECC
Confidence 2221 1122 35788999999987766544 789999986
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.9e-12 Score=118.48 Aligned_cols=196 Identities=13% Similarity=0.019 Sum_probs=128.0
Q ss_pred CCCCeEEEEeeccccccccccCceEEE-----EEcCCCcEEEEEccCCeeEEEecCCCCCCe--EEEEEecCCCEEEEEe
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLA-----LGTSNGDILAVDVLTGEMKWKSTGRHPGGL--AGLAFAKKGRSLHVVG 92 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~-----~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v--~~v~~~~~~~~l~s~~ 92 (340)
|...+..++|||||+ +|| .|+.+..|++||+.+++.+. .. +...+ ..++|+|||+.|+.++
T Consensus 119 ~~~~~~~~~~SPDG~---------~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~-~~~~~~~~~~~wspDg~~l~~~~ 186 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGK---------KVAFAQKPNAADEAVLHVIDVDSGEWSK--VD-VIEGGKYATPKWTPDSKGFYYEW 186 (695)
T ss_dssp SCEEEEEEEECTTSS---------EEEEEEEETTCSCCEEEEEETTTCCBCS--SC-CBSCCTTCCCEECTTSSEEEEEE
T ss_pred CCEEEEEEEECCCCC---------EEEEEECCCCCceEEEEEEECCCCCCcC--Cc-ccCcccccceEEecCCCEEEEEE
Confidence 445789999999998 777 34445789999999997541 11 21222 6899999999999998
Q ss_pred CCCc-------------EEEEeCCCCe----EEEEeecCCCCeeEEEEccCCCEEEE--ecC----cEEEEECCCCceeE
Q 036605 93 TNGM-------------ASEMKSEMGE----VIREFKASEKPISSSAFLCEEKIFAL--ASS----EVRILSLENGEEVL 149 (340)
Q Consensus 93 ~dg~-------------i~~wd~~~~~----~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~----~i~i~d~~~~~~~~ 149 (340)
.|.. |++|++.++. .+.....+...+..+.|+|||++|+. .++ .|++++..+++ ..
T Consensus 187 ~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~ 265 (695)
T 2bkl_A 187 LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FR 265 (695)
T ss_dssp CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CE
T ss_pred ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eE
Confidence 8765 9999998876 33333334457889999999998865 233 38888766553 45
Q ss_pred EeecCCCCeEEEEECCCCCEEEEEEc---CCCeEEEEEccCCCCCccCCceeeecC-CCeeeeeecCCCCCCCCEEEEEe
Q 036605 150 KFSDDVGPLQYVSASDGAKIIITAGY---GEKHLQVWRCDISSKTVNKGPALSMRH-SPVAIDCKNSPNGEDGTVILAVA 225 (340)
Q Consensus 150 ~~~~~~~~v~~~~~s~~~~~l~s~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~s 225 (340)
.+..+...+....+ ++|. ++..+. .++.|.+||+ .++.......+...+ ...+..+ .+ . ++.++++..
T Consensus 266 ~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~--~~~~~~~~~~l~~~~~~~~l~~~--~~-~-~~~lv~~~~ 337 (695)
T 2bkl_A 266 LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDP--AKPARASWKEIVPEDSSASLLSV--SI-V-GGHLSLEYL 337 (695)
T ss_dssp EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBT--TBCSGGGCEEEECCCSSCEEEEE--EE-E-TTEEEEEEE
T ss_pred EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeC--CCCCccCCeEEecCCCCCeEEEE--EE-E-CCEEEEEEE
Confidence 55556666666666 5565 444443 2578899987 333211001111122 2223333 33 3 567888889
Q ss_pred CCCcEEEEECC
Q 036605 226 ESGVAYSWDLK 236 (340)
Q Consensus 226 ~dg~i~vwd~~ 236 (340)
.|+..+||.+.
T Consensus 338 ~dg~~~l~~~~ 348 (695)
T 2bkl_A 338 KDATSEVRVAT 348 (695)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 99988887654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.3e-12 Score=117.51 Aligned_cols=214 Identities=13% Similarity=0.031 Sum_probs=134.8
Q ss_pred CccCCCCcee-eeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCc-------------EEEEEccCCe---
Q 036605 1 IWSTNDGSLL-AEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGD-------------ILAVDVLTGE--- 63 (340)
Q Consensus 1 vwd~~~g~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~-------------i~i~d~~~~~--- 63 (340)
|||+.+|+.+ .... .......++|+|||+ .|+.++.+.. |++|++.++.
T Consensus 151 v~dl~tg~~~~~~~~-----~~~~~~~~~wspDg~---------~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~ 216 (695)
T 2bkl_A 151 VIDVDSGEWSKVDVI-----EGGKYATPKWTPDSK---------GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD 216 (695)
T ss_dssp EEETTTCCBCSSCCB-----SCCTTCCCEECTTSS---------EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC
T ss_pred EEECCCCCCcCCccc-----CcccccceEEecCCC---------EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc
Confidence 5788888764 2111 011126789999998 8888888776 9999998876
Q ss_pred -eEEEecCCCCCCeEEEEEecCCCEEEEEeCCC----cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec----
Q 036605 64 -MKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG----MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS---- 134 (340)
Q Consensus 64 -~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg----~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---- 134 (340)
.+..... |...+..+.|+|||++|+..+.++ .|.+|+..++.. ..+..+...+....+ +++.+++..+
T Consensus 217 ~lv~~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~ 293 (695)
T 2bkl_A 217 TVVHERTG-DPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAP 293 (695)
T ss_dssp EEEECCCC-CTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCT
T ss_pred eEEEecCC-CCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCC
Confidence 3333333 566889999999999988877665 778887766653 344445555555555 5666444443
Q ss_pred -CcEEEEECCCCce--eEEeecC--CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeee
Q 036605 135 -SEVRILSLENGEE--VLKFSDD--VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDC 209 (340)
Q Consensus 135 -~~i~i~d~~~~~~--~~~~~~~--~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (340)
..|.+||+.++.. ...+..+ ...+..+.|+ ++..+++... |+..+||.++.. +.....+. ......+..+
T Consensus 294 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~-dg~~~l~~~~~~-g~~~~~l~--~~~~~~v~~~ 368 (695)
T 2bkl_A 294 RQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK-DATSEVRVATLK-GKPVRTVQ--LPGVGAASNL 368 (695)
T ss_dssp TCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE-TTEEEEEEEETT-CCEEEECC--CSSSSEECCC
T ss_pred CCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE-CCEEEEEEEeCC-CCeeEEec--CCCCeEEEEe
Confidence 3399999987653 2344333 3457788887 5555666555 899998887532 22211111 1222233323
Q ss_pred ecCCCCCCCCEEEEEe----CCCcEEEEECCCCC
Q 036605 210 KNSPNGEDGTVILAVA----ESGVAYSWDLKTVS 239 (340)
Q Consensus 210 ~~~~~~~~~~~l~~~s----~dg~i~vwd~~~~~ 239 (340)
.+ ++++..++... ..+.|++||+.+++
T Consensus 369 --~~-s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 369 --MG-LEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp --BS-CTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred --ec-CCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 44 67777666333 34789999998754
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-11 Score=105.98 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=109.0
Q ss_pred CccCCCCceeeeeeCCCCC--CCCCeEEEEeeccccccccccCceEEEEEcC--CCcEEEEEccCCeeEEE-ecCCCCCC
Q 036605 1 IWSTNDGSLLAEWKQPDGE--PVVSYSCLACGFVGKKRRKERGTLLLALGTS--NGDILAVDVLTGEMKWK-STGRHPGG 75 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~-~~~~h~~~ 75 (340)
+||+.+++.+.++...... +......++|+|+|+ +|+++.. ++.|.+||+.+++.+.. +.. .+
T Consensus 85 v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~---------~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~~- 152 (361)
T 2oiz_A 85 VWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK---------FIVLQNASPATSIGIVDVAKGDYVEDVTAA--AG- 152 (361)
T ss_dssp EEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS---------EEEEEEESSSEEEEEEETTTTEEEEEEGGG--TT-
T ss_pred EEECcCCcEEEEEEcCccccccCCCcceEEECCCCC---------EEEEECCCCCCeEEEEECCCCcEEEEEecC--CC-
Confidence 4788888877766521000 224566799999998 8887763 68999999999988777 442 11
Q ss_pred eEEEEEecCC-CEEEEEeCCCc------------------------------------------------EEEEeCCCCe
Q 036605 76 LAGLAFAKKG-RSLHVVGTNGM------------------------------------------------ASEMKSEMGE 106 (340)
Q Consensus 76 v~~v~~~~~~-~~l~s~~~dg~------------------------------------------------i~~wd~~~~~ 106 (340)
...+.+.|++ ..+++.+.||. |.++|+..+.
T Consensus 153 ~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~ 232 (361)
T 2oiz_A 153 CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDE 232 (361)
T ss_dssp EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence 1112233322 23333333333 4444433221
Q ss_pred E--EEEeecC----------CCCeeEEEEccCCCEEEEec-------------CcEEEEECCCCceeEEeecCCCCeEEE
Q 036605 107 V--IREFKAS----------EKPISSSAFLCEEKIFALAS-------------SEVRILSLENGEEVLKFSDDVGPLQYV 161 (340)
Q Consensus 107 ~--~~~~~~~----------~~~i~~l~~~~~~~~l~~~~-------------~~i~i~d~~~~~~~~~~~~~~~~v~~~ 161 (340)
. ...+... ......++++|++..++++. ..|.+||+.+++.+..+..+. +..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~i 310 (361)
T 2oiz_A 233 VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSM 310 (361)
T ss_dssp CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEE
T ss_pred ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEE
Confidence 1 1111100 01112378999988876632 259999999999999998776 8999
Q ss_pred EECCCCCEEEEEEcCCCeEEEEEccCCCC
Q 036605 162 SASDGAKIIITAGYGEKHLQVWRCDISSK 190 (340)
Q Consensus 162 ~~s~~~~~l~s~~~~d~~i~iwd~~~~~~ 190 (340)
+|+|+|++|++++. +.|.+||. .++
T Consensus 311 a~spdg~~l~v~n~--~~v~v~D~--~t~ 335 (361)
T 2oiz_A 311 TIDQQRNLMLTLDG--GNVNVYDI--SQP 335 (361)
T ss_dssp EEETTTTEEEEECS--SCEEEEEC--SSS
T ss_pred EECCCCCEEEEeCC--CeEEEEEC--CCC
Confidence 99999999888553 99999998 455
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-11 Score=99.15 Aligned_cols=195 Identities=11% Similarity=0.026 Sum_probs=125.7
Q ss_pred CeEEEEeeccccccccccCceEEE-EEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLA-LGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMK 101 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~-~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd 101 (340)
...+++++++++ +++ +...++.|.+||..++... .+...+...+.+++++++++.+++.. ++.|.+||
T Consensus 25 ~p~~i~~~~~g~---------l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d 93 (270)
T 1rwi_B 25 SPSGVAVDSAGN---------VYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLA 93 (270)
T ss_dssp CEEEEEECTTCC---------EEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEEC
T ss_pred CccceEECCCCC---------EEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEe
Confidence 778999999999 777 5577899999997665432 22222445688999999988555544 88999999
Q ss_pred CCCCeEEEEee-cCCCCeeEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCC
Q 036605 102 SEMGEVIREFK-ASEKPISSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEK 178 (340)
Q Consensus 102 ~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~ 178 (340)
...... ..+. .....+..++++++|+++++. ++.|.+|+..+.............+..++++++|+.+++ ...++
T Consensus 94 ~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~-~~~~~ 171 (270)
T 1rwi_B 94 AGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVT-DTDNN 171 (270)
T ss_dssp TTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEE-EGGGT
T ss_pred CCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEE-ECCCC
Confidence 876543 2332 223568899999999877764 345888876655433222223346788999999985555 44378
Q ss_pred eEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 179 HLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 179 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.|.+|+.+ ......... ........+ .+ .++|..+++...++.|.+|+....
T Consensus 172 ~i~~~~~~--~~~~~~~~~---~~~~~p~~i--~~-d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 172 RVVKLEAE--SNNQVVLPF---TDITAPWGI--AV-DEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp EEEEECTT--TCCEEECCC---SSCCSEEEE--EE-CTTCCEEEEETTTSCEEEECTTCS
T ss_pred EEEEEecC--CCceEeecc---cCCCCceEE--EE-CCCCCEEEEECCCCcEEEEcCCCC
Confidence 99999973 322111111 111122222 33 678877777777889999998653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-10 Score=94.59 Aligned_cols=204 Identities=12% Similarity=0.078 Sum_probs=132.3
Q ss_pred CCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 036605 22 VSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEM 100 (340)
Q Consensus 22 ~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~w 100 (340)
.--.+..|+|++ . ++++...++.|+.||..+++. ..+. ....+.+++++++|++++ +. +..|.+|
T Consensus 13 ~~~Egp~w~~~~~~---------l~~~d~~~~~i~~~d~~~~~~-~~~~--~~~~~~~i~~~~dG~l~v-~~-~~~l~~~ 78 (297)
T 3g4e_A 13 RCGESPVWEEVSNS---------LLFVDIPAKKVCRWDSFTKQV-QRVT--MDAPVSSVALRQSGGYVA-TI-GTKFCAL 78 (297)
T ss_dssp SBEEEEEEETTTTE---------EEEEETTTTEEEEEETTTCCE-EEEE--CSSCEEEEEEBTTSSEEE-EE-TTEEEEE
T ss_pred ccccCCeEECCCCE---------EEEEECCCCEEEEEECCCCcE-EEEe--CCCceEEEEECCCCCEEE-EE-CCeEEEE
Confidence 345688999965 6 778888899999999988764 3333 456899999999999544 44 5689999
Q ss_pred eCCCCeEEEEeecC----CCCeeEEEEccCCCEEEEe-c----------CcEEEEECCCCceeEEeecCCCCeEEEEECC
Q 036605 101 KSEMGEVIREFKAS----EKPISSSAFLCEEKIFALA-S----------SEVRILSLENGEEVLKFSDDVGPLQYVSASD 165 (340)
Q Consensus 101 d~~~~~~~~~~~~~----~~~i~~l~~~~~~~~l~~~-~----------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~ 165 (340)
|..+++........ ...+..++++|+|+++++. . ....+|.+.....+..+..+......++|+|
T Consensus 79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL 158 (297)
T ss_dssp ETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT
T ss_pred ECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC
Confidence 99888754333221 2347889999999977753 1 2234554432222333333334568899999
Q ss_pred CCCEEEEEEcCCCeEEEEEccCCCCCccC-Cceeeec-CCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 166 GAKIIITAGYGEKHLQVWRCDISSKTVNK-GPALSMR-HSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 166 ~~~~l~s~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+++.++.+...++.|.+|+++...+.... .....+. .......+ .+ .++|.+.++...++.|..||..+++.+.
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~--~~-d~~G~lwva~~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGM--CI-DAEGKLWVACYNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEE--EE-BTTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCee--EE-CCCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence 99988777766889999998433332211 1111111 11112222 22 6788877777778889999988766544
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-12 Score=110.38 Aligned_cols=174 Identities=11% Similarity=0.100 Sum_probs=120.8
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-----------eEEEecCCCCCCeEEEEEecCCCEEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-----------MKWKSTGRHPGGLAGLAFAKKGRSLHV 90 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-----------~~~~~~~~h~~~v~~v~~~~~~~~l~s 90 (340)
..+..|++++... ++++|+.++ +.+|+++..+ ..... . +.+ |+.++| +++.|++
T Consensus 38 ~~~nlLais~~~g---------ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~-lp~-V~~l~f--d~~~L~v 102 (388)
T 1xip_A 38 ASLQNLDISNSKS---------LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-E-IPD-VIFVCF--HGDQVLV 102 (388)
T ss_dssp SCCBCEEEETTTT---------EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-E-CTT-EEEEEE--ETTEEEE
T ss_pred ccccEEEEcCCCC---------EEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-e-CCC-eeEEEE--CCCEEEE
Confidence 4689999999998 899998885 6669866433 11222 2 666 999999 8999999
Q ss_pred EeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEE
Q 036605 91 VGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKII 170 (340)
Q Consensus 91 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 170 (340)
+ .++.|++||+.+.........+..++.++.+.+..-.+++.++.|.+||+.++.... +...|++++|+|+| +
T Consensus 103 ~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~ 175 (388)
T 1xip_A 103 S-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--L 175 (388)
T ss_dssp E-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--E
T ss_pred E-cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--e
Confidence 8 889999999987665555666777788877766542223367779999999876543 34589999999999 5
Q ss_pred EEEEcCCCeEEEEEccCCCCCc--cCCc----eee--ecCCCeeeeeecCCCCCCCCEEEE
Q 036605 171 ITAGYGEKHLQVWRCDISSKTV--NKGP----ALS--MRHSPVAIDCKNSPNGEDGTVILA 223 (340)
Q Consensus 171 ~s~~~~d~~i~iwd~~~~~~~~--~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 223 (340)
+.+.. ||.+++|+.+ .++. ...+ .+. ..+...+..+ .| .+++.++++
T Consensus 176 ~vg~~-dg~i~~~~~~--~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI--~w-l~~~~flv~ 230 (388)
T 1xip_A 176 AVLLK-DRSFQSFAWR--NGEMEKQFEFSLPSELEELPVEEYSPLSV--TI-LSPQDFLAV 230 (388)
T ss_dssp EEEET-TSCEEEEEEE--TTEEEEEEEECCCHHHHTSCTTTSEEEEE--EE-SSSSEEEEE
T ss_pred EEEEc-CCcEEEEcCC--CccccccceecCCcccccccCCCeeEEEE--EE-ecCCeEEEE
Confidence 55566 9999999874 3221 1111 000 1245556666 66 566666665
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-10 Score=96.63 Aligned_cols=214 Identities=10% Similarity=0.054 Sum_probs=132.7
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeecc-ccccccccCceEEEEEcCCCcEEEEEccCCeeEEE-ecC---CCCCCe
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFV-GKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWK-STG---RHPGGL 76 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~---~h~~~v 76 (340)
||+.+|+......+...++...+.+++++++ ++ ++++.. .+.|.+||.. ++.... ... .....+
T Consensus 51 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~---------l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 119 (314)
T 1pjx_A 51 IDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ---------LFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGC 119 (314)
T ss_dssp ECTTTCCEEEEECCEETTEECCEEEEEECSSSSE---------EEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCC
T ss_pred EeCCCCcEEEEEecccCCCCCCCceEEEecCCCc---------EEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCC
Confidence 5655665442111100123467889999999 77 555544 4479999988 765433 221 112358
Q ss_pred EEEEEecCCCEEEEEeCC---------------CcEEEEeCCCCeEEEEeecCCCCeeEEEEc----cCCCEEEEe---c
Q 036605 77 AGLAFAKKGRSLHVVGTN---------------GMASEMKSEMGEVIREFKASEKPISSSAFL----CEEKIFALA---S 134 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~d---------------g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~----~~~~~l~~~---~ 134 (340)
.+++++++|+.+++...+ +.|..|+.. ++..... .+......++++ |+++.++.+ +
T Consensus 120 ~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~ 197 (314)
T 1pjx_A 120 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPT 197 (314)
T ss_dssp CEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTT
T ss_pred cCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCC
Confidence 899999999877776554 578888876 5543332 233456889999 999766543 2
Q ss_pred CcEEEEECC-CCce-----eEEeecCC-CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeee
Q 036605 135 SEVRILSLE-NGEE-----VLKFSDDV-GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAI 207 (340)
Q Consensus 135 ~~i~i~d~~-~~~~-----~~~~~~~~-~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 207 (340)
+.|.+||+. +++. ...+..+. ..+..++++++|..+++... ++.|.+||. .+++....+. .+.....
T Consensus 198 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-~~~i~~~d~--~~g~~~~~~~---~~~~~~~ 271 (314)
T 1pjx_A 198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-SSHIEVFGP--DGGQPKMRIR---CPFEKPS 271 (314)
T ss_dssp TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-TTEEEEECT--TCBSCSEEEE---CSSSCEE
T ss_pred CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-CCEEEEEcC--CCCcEeEEEe---CCCCCce
Confidence 449999986 4432 22333333 55788999999987776555 889999997 3343322222 1222333
Q ss_pred eeecCCCCCCCCEEEE-EeCCCcEEEEECCC
Q 036605 208 DCKNSPNGEDGTVILA-VAESGVAYSWDLKT 237 (340)
Q Consensus 208 ~~~~~~~~~~~~~l~~-~s~dg~i~vwd~~~ 237 (340)
.+ .+ ++++..|++ ...++.|..|++..
T Consensus 272 ~i--~~-~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 272 NL--HF-KPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EE--EE-CTTSSEEEEEETTTTEEEEEECSS
T ss_pred eE--EE-CCCCCEEEEEeCCCCeEEEEeCCC
Confidence 33 44 788885554 45567899999865
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.7e-11 Score=112.60 Aligned_cols=215 Identities=13% Similarity=0.071 Sum_probs=131.2
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCc--------------EEEEEccCCee--
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGD--------------ILAVDVLTGEM-- 64 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~--------------i~i~d~~~~~~-- 64 (340)
|||+.+|+.+.... +...+..++|+|| + .|+.++.++. |++|++.++..
T Consensus 193 v~dl~tg~~~~~~~-----~~~~~~~~~wspD-~---------~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~ 257 (741)
T 1yr2_A 193 FVGVADGKPLADEL-----KWVKFSGLAWLGN-D---------ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD 257 (741)
T ss_dssp EEETTTCCEEEEEE-----EEEESCCCEESTT-S---------EEEEEECCCC--------CCCCCEEEEEETTSCGGGC
T ss_pred EEECCCCCCCCccC-----CCceeccEEEECC-C---------EEEEEEecCcccccccccCCCCCEEEEEECCCCchhC
Confidence 47888887654321 1122357899999 8 7887776654 88999877652
Q ss_pred EEEecC-CCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCeE--EEEeecCCCCeeEEEEccCCCEEEEec--
Q 036605 65 KWKSTG-RHPGGLAGLAFAKKGRSLHVVGTNG-----MASEMKSEMGEV--IREFKASEKPISSSAFLCEEKIFALAS-- 134 (340)
Q Consensus 65 ~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~-- 134 (340)
...+.. .+...+..+.|+|||++|+..+.++ .|.+||+.++.. ...+..+....... ++|+|..|+...
T Consensus 258 ~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~ 336 (741)
T 1yr2_A 258 QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGD 336 (741)
T ss_dssp EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECT
T ss_pred EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECC
Confidence 222322 1444689999999999888877543 899999987731 34455454444444 358888776632
Q ss_pred ----CcEEEEECCCCc-eeEEe-ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeee
Q 036605 135 ----SEVRILSLENGE-EVLKF-SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAID 208 (340)
Q Consensus 135 ----~~i~i~d~~~~~-~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 208 (340)
..|.+||+.++. ....+ ..+...+..+.++ ++..+++... |+..+||.++.. +.....+. ......+..
T Consensus 337 ~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~-dg~~~l~~~~~~-g~~~~~l~--~~~~~~v~~ 411 (741)
T 1yr2_A 337 GAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIH-DAKSQVLAFDLD-GKPAGAVS--LPGIGSASG 411 (741)
T ss_dssp TCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEE-TTEEEEEEEETT-SCEEEECB--CSSSCEEEE
T ss_pred CCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEE-CCEEEEEEEeCC-CCceeecc--CCCCeEEEE
Confidence 229999998752 33333 4444556677776 4445555444 888888877532 22222221 122233333
Q ss_pred eecCCCCCCCCEEEEE-e---CCCcEEEEECCCCC
Q 036605 209 CKNSPNGEDGTVILAV-A---ESGVAYSWDLKTVS 239 (340)
Q Consensus 209 ~~~~~~~~~~~~l~~~-s---~dg~i~vwd~~~~~ 239 (340)
+ .+ ++++..++.. + ..+.|++||+.+++
T Consensus 412 ~--~~-s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 412 L--SG-RPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp E--EC-CBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred e--ec-CCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 3 34 5676655532 2 34789999998754
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.2e-10 Score=96.98 Aligned_cols=194 Identities=13% Similarity=0.058 Sum_probs=130.2
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCC--cEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG--MASE 99 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg--~i~~ 99 (340)
.....|+|+|+++ ++++...++.|++||..++........ .. ... ++|+++++.|++++.++ .|.+
T Consensus 131 ~~P~~la~d~~g~---------lyv~d~~~~~I~~id~~~g~~~~~~~~-~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~ 198 (409)
T 3hrp_A 131 KYMWGIAAVGNNT---------VLAYQRDDPRVRLISVDDNKVTTVHPG-FK-GGK-PAVTKDKQRVYSIGWEGTHTVYV 198 (409)
T ss_dssp CCEEEEEECSTTE---------EEEEETTTTEEEEEETTTTEEEEEEET-CC-BCB-CEECTTSSEEEEEBSSTTCEEEE
T ss_pred CCceEEEEeCCCC---------EEEEecCCCcEEEEECCCCEEEEeecc-CC-CCc-eeEecCCCcEEEEecCCCceEEE
Confidence 3578999999999 888888889999999988876544443 22 233 99999999999988866 7999
Q ss_pred EeCCCCeEEEEe---ec-CCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEE----eecCCCCe--EEEEECCCC
Q 036605 100 MKSEMGEVIREF---KA-SEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLK----FSDDVGPL--QYVSASDGA 167 (340)
Q Consensus 100 wd~~~~~~~~~~---~~-~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~----~~~~~~~v--~~~~~s~~~ 167 (340)
|+...+.....+ .. ....+.+++++|++..|++++. .|+.||..++..... ..++...- ..++|+|++
T Consensus 199 ~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 199 YMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp EEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred EEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence 998766543333 12 3456789999995444444443 499999987753222 12222222 399999975
Q ss_pred CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecC-----------------CCeeeeeecCCCCCCCCEEEEEe-CCCc
Q 036605 168 KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRH-----------------SPVAIDCKNSPNGEDGTVILAVA-ESGV 229 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~s-~dg~ 229 (340)
..|+.+....+.|+.|+.+ . .. ..+ .+. .+.-+.+ .++|.++++-+ .+++
T Consensus 279 g~lyv~d~~~~~I~~~~~~--g-~~-~~~---~g~~~~~g~~dg~~~~~~~~~P~gia~-----d~dG~lyvad~~~~~~ 346 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPD--G-EC-EWF---CGSATQKTVQDGLREEALFAQPNGMTV-----DEDGNFYIVDGFKGYC 346 (409)
T ss_dssp TEEEEEETTTTEEEEECTT--C-CE-EEE---EECTTCCSCBCEEGGGCBCSSEEEEEE-----CTTCCEEEEETTTTCE
T ss_pred CEEEEEeCCCCEEEEEecC--C-CE-EEE---EeCCCCCCcCCCcccccEeCCCeEEEE-----eCCCCEEEEeCCCCCE
Confidence 6666666668899999863 2 11 100 011 1222333 78888777777 7889
Q ss_pred EEEEECCCCC
Q 036605 230 AYSWDLKTVS 239 (340)
Q Consensus 230 i~vwd~~~~~ 239 (340)
|+.|++.++.
T Consensus 347 I~~~~~~~G~ 356 (409)
T 3hrp_A 347 LRKLDILDGY 356 (409)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCE
Confidence 9999976543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-09 Score=88.31 Aligned_cols=193 Identities=7% Similarity=0.041 Sum_probs=130.1
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE-EEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK-WKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
....+.++++.+++. ++++...++.|..||.. ++.. ..+.. ....+.++++++++..+++...++.|.
T Consensus 55 ~~~~~~~i~~~~~g~---------l~v~~~~~~~i~~~~~~-g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~ 123 (299)
T 2z2n_A 55 PDAKVMCLTISSDGE---------VWFTENAANKIGRITKK-GIIKEYTLPN-PDSAPYGITEGPNGDIWFTEMNGNRIG 123 (299)
T ss_dssp TTCCEEEEEECTTSC---------EEEEETTTTEEEEECTT-SCEEEEECSS-TTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred ccCceeeEEECCCCC---------EEEeCCCCCeEEEECCC-CcEEEEeCCC-cCCCceeeEECCCCCEEEEecCCceEE
Confidence 346788999999998 77777778899999976 4332 22222 455789999999998777766788999
Q ss_pred EEeCCCCeEEEE-eecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEE-eecCCCCeEEEEECCCCCEEEEEE
Q 036605 99 EMKSEMGEVIRE-FKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLK-FSDDVGPLQYVSASDGAKIIITAG 174 (340)
Q Consensus 99 ~wd~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~ 174 (340)
+||. +++.... .......+..+++.+++.++++.. +.|..||. +++.... +......+..+++++++...++ .
T Consensus 124 ~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~-~ 200 (299)
T 2z2n_A 124 RITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFV-E 200 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE-E
T ss_pred EECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE-c
Confidence 9998 5554432 222345688999999998877653 45999998 6654332 2334456889999999986555 4
Q ss_pred cCCCeEEEEEccCCCCCccCCceeeec-CCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 175 YGEKHLQVWRCDISSKTVNKGPALSMR-HSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
..++.|.+|+. .+... . +... .......+ .+ .++|..+++...++.|..||.
T Consensus 201 ~~~~~i~~~~~---~g~~~-~--~~~~~~~~~~~~i--~~-~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 201 IIGNKIGRITT---SGEIT-E--FKIPTPNARPHAI--TA-GAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTTTEEEEECT---TCCEE-E--EECSSTTCCEEEE--EE-CSTTCEEEEETTTTEEEEEET
T ss_pred cCCceEEEECC---CCcEE-E--EECCCCCCCceeE--EE-CCCCCEEEeccCCceEEEECC
Confidence 43788999986 22211 1 1111 11222222 33 677876666657788999997
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.2e-09 Score=87.99 Aligned_cols=198 Identities=7% Similarity=0.055 Sum_probs=131.9
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
.+...+.++++.++++ ++++...++.|.+||.. ++........+...+.++++++++..+++...++.|.
T Consensus 12 ~~~~~~~~i~~d~~g~---------l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 81 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGK---------VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIG 81 (299)
T ss_dssp SSSCCEEEEEECTTSC---------EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CcCCCccceEECCCCC---------EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEE
Confidence 3456899999999999 67766668899999988 6543322111456799999999998777766688999
Q ss_pred EEeCCCCeEEEEee--cCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeE-EeecCCCCeEEEEECCCCCEEEEE
Q 036605 99 EMKSEMGEVIREFK--ASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVL-KFSDDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 99 ~wd~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~ 173 (340)
.||.. ++. ..+. .....+..+++.+++.++++.. +.|..||. +++... ........+..+++++++...++
T Consensus 82 ~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~- 157 (299)
T 2z2n_A 82 RITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFT- 157 (299)
T ss_dssp EECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEE-
T ss_pred EECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEE-
Confidence 99986 443 2232 2345688999999998887753 45999998 554332 22334456899999999976665
Q ss_pred EcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 174 GYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
...++.|..||. .++... .... ........+ .+ .+++..+++...++.|.+|+. ++.
T Consensus 158 ~~~~~~i~~~~~---~g~~~~-~~~~-~~~~~~~~i--~~-~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 158 ENQNNAIGRITE---SGDITE-FKIP-TPASGPVGI--TK-GNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp ETTTTEEEEECT---TCCEEE-EECS-STTCCEEEE--EE-CTTSSEEEEETTTTEEEEECT-TCC
T ss_pred eCCCCEEEEEcC---CCcEEE-eeCC-CCCCcceeE--EE-CCCCCEEEEccCCceEEEECC-CCc
Confidence 443788988886 222111 1100 111112222 23 677887777667888999998 443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-11 Score=102.51 Aligned_cols=136 Identities=10% Similarity=0.058 Sum_probs=107.8
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASE 99 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~ 99 (340)
+.. |+.++| ++. +|+++ .++.|++||+.+......... |...+.++.+.+. .++++..||.|.+
T Consensus 87 lp~-V~~l~f--d~~---------~L~v~-~~~~l~v~dv~sl~~~~~~~~-~~~~v~~i~~~~p--~~av~~~dG~L~v 150 (388)
T 1xip_A 87 IPD-VIFVCF--HGD---------QVLVS-TRNALYSLDLEELSEFRTVTS-FEKPVFQLKNVNN--TLVILNSVNDLSA 150 (388)
T ss_dssp CTT-EEEEEE--ETT---------EEEEE-ESSEEEEEESSSTTCEEEEEE-CSSCEEEEEECSS--EEEEEETTSEEEE
T ss_pred CCC-eeEEEE--CCC---------EEEEE-cCCcEEEEEchhhhccCccce-eecceeeEEecCC--CEEEEECCCCEEE
Confidence 345 999999 888 89998 889999999887665555555 7778988887754 3888999999999
Q ss_pred EeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCcEEEEECCCCce--eEEe------e---cCCCCeEEEEECCCCC
Q 036605 100 MKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSEVRILSLENGEE--VLKF------S---DDVGPLQYVSASDGAK 168 (340)
Q Consensus 100 wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~ 168 (340)
||+.++.... +...|++++|+|+|..+...++++++|+...+.. ...+ . +|...|.++.|.+++.
T Consensus 151 ~dl~~~~~~~----~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 151 LDLRTKSTKQ----LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp EETTTCCEEE----EEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred EEccCCcccc----ccCCceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 9999887643 2347999999999966666788899999887764 4445 2 3678899999999998
Q ss_pred EEEEEEc
Q 036605 169 IIITAGY 175 (340)
Q Consensus 169 ~l~s~~~ 175 (340)
++++-..
T Consensus 227 flv~y~~ 233 (388)
T 1xip_A 227 FLAVFGN 233 (388)
T ss_dssp EEEEEEC
T ss_pred EEEEEcC
Confidence 8887544
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-09 Score=95.08 Aligned_cols=165 Identities=12% Similarity=0.022 Sum_probs=108.8
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCC--cEEEEEccCCeeEEEe----cCCCCCC
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNG--DILAVDVLTGEMKWKS----TGRHPGG 75 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~----~~~h~~~ 75 (340)
||+.++.+..... .... .. ++|+|+++ +|+++..++ .|.+|+...+.....+ .. ....
T Consensus 157 id~~~g~~~~~~~----~~~~-~~-ia~~~~g~---------~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~-~~~~ 220 (409)
T 3hrp_A 157 ISVDDNKVTTVHP----GFKG-GK-PAVTKDKQ---------RVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST-FSGK 220 (409)
T ss_dssp EETTTTEEEEEEE----TCCB-CB-CEECTTSS---------EEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT-SCSC
T ss_pred EECCCCEEEEeec----cCCC-Cc-eeEecCCC---------cEEEEecCCCceEEEEEcCCCceeEEeeeccch-hcCC
Confidence 5666666554443 2222 23 89999998 788887766 7999998776543344 21 3456
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEE----eecCCCCe-e-EEEEccCCCEEEEec---CcEEEEECCCCc
Q 036605 76 LAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIRE----FKASEKPI-S-SSAFLCEEKIFALAS---SEVRILSLENGE 146 (340)
Q Consensus 76 v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~~i-~-~l~~~~~~~~l~~~~---~~i~i~d~~~~~ 146 (340)
+.+++++|++..|+.+..++.|..||..++..... .......- . .++|+|++..|+.++ +.|+.|+....
T Consensus 221 p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~- 299 (409)
T 3hrp_A 221 IGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE- 299 (409)
T ss_dssp CCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-
T ss_pred cEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-
Confidence 78999999666777777889999999987764322 11222111 3 999999655554433 33999987643
Q ss_pred eeEEeecCC---------------CCeEEEEECCCCCEEEEEEc-CCCeEEEEEc
Q 036605 147 EVLKFSDDV---------------GPLQYVSASDGAKIIITAGY-GEKHLQVWRC 185 (340)
Q Consensus 147 ~~~~~~~~~---------------~~v~~~~~s~~~~~l~s~~~-~d~~i~iwd~ 185 (340)
+..+.++. .....++++++|..+++ .. .++.|+.|++
T Consensus 300 -~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva-d~~~~~~I~~~~~ 352 (409)
T 3hrp_A 300 -CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV-DGFKGYCLRKLDI 352 (409)
T ss_dssp -EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE-ETTTTCEEEEEET
T ss_pred -EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE-eCCCCCEEEEEEC
Confidence 33333322 34789999999985555 55 5899999996
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-10 Score=110.80 Aligned_cols=195 Identities=12% Similarity=0.029 Sum_probs=124.8
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCC-----CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSN-----GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG 95 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg 95 (340)
...+..++|||||+ +||.++.+ ..|++||+.+++.+.... +...+..++|+|| +.|+.++.++
T Consensus 162 ~~~~~~~~~SPDG~---------~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~ 229 (741)
T 1yr2_A 162 ATALDAWAASDDGR---------LLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAE 229 (741)
T ss_dssp -EEEEEEEECTTSS---------EEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCC
T ss_pred CEEEEeEEECCCCC---------EEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecC
Confidence 34688999999998 78776543 369999999998654321 2222357899999 9888887664
Q ss_pred c--------------EEEEeCCCCeE--EEEeec--CCCCeeEEEEccCCCEEEEec--C-----cEEEEECCCC--cee
Q 036605 96 M--------------ASEMKSEMGEV--IREFKA--SEKPISSSAFLCEEKIFALAS--S-----EVRILSLENG--EEV 148 (340)
Q Consensus 96 ~--------------i~~wd~~~~~~--~~~~~~--~~~~i~~l~~~~~~~~l~~~~--~-----~i~i~d~~~~--~~~ 148 (340)
. |++|++.++.. ...+.. +...+..+.|+|||++|+... + .|++||+.++ +..
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred cccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence 3 89999877652 222322 223578999999999886522 2 4999999877 314
Q ss_pred EEeecCCCCeEEEEECCCCCEEEEEEcC---CCeEEEEEccCCCCC-ccCCceeeecCCCeeeeeecCCCCCCCCEEEEE
Q 036605 149 LKFSDDVGPLQYVSASDGAKIIITAGYG---EKHLQVWRCDISSKT-VNKGPALSMRHSPVAIDCKNSPNGEDGTVILAV 224 (340)
Q Consensus 149 ~~~~~~~~~v~~~~~s~~~~~l~s~~~~---d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 224 (340)
..+..+...+.... +|+|..|+..+.. .+.|.+||+ ..+. ....+. ..+...+..+ .+ . ++.++++.
T Consensus 310 ~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~--~~~~~~~~~l~--~~~~~~l~~~--~~-~-~~~lv~~~ 380 (741)
T 1yr2_A 310 TALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDL--SGSTPRFDTVV--PESKDNLESV--GI-A-GNRLFASY 380 (741)
T ss_dssp EEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEEC--SSSSCEEEEEE--CCCSSEEEEE--EE-E-BTEEEEEE
T ss_pred EEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeC--CCCccccEEEe--cCCCCeEEEE--EE-E-CCEEEEEE
Confidence 55655555555554 4888888876652 345888887 3321 111111 1222222233 33 2 55677888
Q ss_pred eCCCcEEEEECC
Q 036605 225 AESGVAYSWDLK 236 (340)
Q Consensus 225 s~dg~i~vwd~~ 236 (340)
..||..+||.+.
T Consensus 381 ~~dg~~~l~~~~ 392 (741)
T 1yr2_A 381 IHDAKSQVLAFD 392 (741)
T ss_dssp EETTEEEEEEEE
T ss_pred EECCEEEEEEEe
Confidence 889887777554
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.29 E-value=7.7e-10 Score=93.36 Aligned_cols=203 Identities=14% Similarity=0.104 Sum_probs=130.6
Q ss_pred CCeEEEEeeccccccccccCceEEEE-------EcCCCcEEEEEccCCeeEEEec---CCCCCCeEEEEEecCCCEEEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLAL-------GTSNGDILAVDVLTGEMKWKST---GRHPGGLAGLAFAKKGRSLHVV 91 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~-------g~~dg~i~i~d~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~ 91 (340)
....+++|+++++ ++++ +..++.|.+||..+++...... ..+...+.++++++++..|+.+
T Consensus 18 ~~~~~~~~~~~g~---------l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~ 88 (314)
T 1pjx_A 18 PGAEGPVFDKNGD---------FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp TTCEEEEECTTSC---------EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred CCccCceECCCCC---------EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE
Confidence 3567899999998 7777 5778999999988887543222 0144678999999983344445
Q ss_pred eCCCcEEEEeCCCCeEEEE-eec----CCCCeeEEEEccCCCEEEEec-----------------CcEEEEECCCCceeE
Q 036605 92 GTNGMASEMKSEMGEVIRE-FKA----SEKPISSSAFLCEEKIFALAS-----------------SEVRILSLENGEEVL 149 (340)
Q Consensus 92 ~~dg~i~~wd~~~~~~~~~-~~~----~~~~i~~l~~~~~~~~l~~~~-----------------~~i~i~d~~~~~~~~ 149 (340)
+....|.+||.. ++.... ... ....+.+++++++|+++++.. +.|..||.. ++. .
T Consensus 89 ~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~ 165 (314)
T 1pjx_A 89 DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-I 165 (314)
T ss_dssp ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-E
T ss_pred ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-E
Confidence 555579999998 765433 221 123478999999998887753 237777765 443 3
Q ss_pred EeecCCCCeEEEEEC----CCCCEEEEEEcCCCeEEEEEccCCCCCccCC-ceeeec-CC-CeeeeeecCCCCCCCCEEE
Q 036605 150 KFSDDVGPLQYVSAS----DGAKIIITAGYGEKHLQVWRCDISSKTVNKG-PALSMR-HS-PVAIDCKNSPNGEDGTVIL 222 (340)
Q Consensus 150 ~~~~~~~~v~~~~~s----~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~l~ 222 (340)
.+..+......++|+ ++++.++.+...++.|.+|+++ ..+..... ....+. +. .....+ .+ .++|.+++
T Consensus 166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~-~~g~~~~~~~~~~~~~~~~~~p~~i--~~-d~~G~l~v 241 (314)
T 1pjx_A 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK-GPAKIENKKVWGHIPGTHEGGADGM--DF-DEDNNLLV 241 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE-ETTEEEEEEEEEECCCCSSCEEEEE--EE-BTTCCEEE
T ss_pred EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECC-CCCccccceEEEECCCCCCCCCCce--EE-CCCCCEEE
Confidence 332333456889999 9998777766557899999974 12211000 000111 11 122222 33 67888888
Q ss_pred EEeCCCcEEEEECCCCCc
Q 036605 223 AVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 223 ~~s~dg~i~vwd~~~~~~ 240 (340)
+...++.|.+||..+++.
T Consensus 242 ~~~~~~~i~~~d~~~g~~ 259 (314)
T 1pjx_A 242 ANWGSSHIEVFGPDGGQP 259 (314)
T ss_dssp EEETTTEEEEECTTCBSC
T ss_pred EEcCCCEEEEEcCCCCcE
Confidence 777888999999875543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-10 Score=107.23 Aligned_cols=198 Identities=8% Similarity=0.081 Sum_probs=125.7
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEE-----cCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALG-----TSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN 94 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g-----~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d 94 (340)
+...+..++|||||+ +||.+ +....|++||+.+++.+.... +......++|+ |++.|+.++.+
T Consensus 127 ~~~~l~~~~~SpDg~---------~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 127 GTTALDQLSFSRDGR---------ILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp SCCEEEEEEECTTSS---------EEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-TTTEEEEEESS
T ss_pred CcEEEEEEEECCCCC---------EEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-CCCEEEEEEec
Confidence 455788899999998 77743 333579999999998554311 11113577899 99999888877
Q ss_pred C-------------cEEEEeCCCCe----EEEEeec-CCCCeeEEEEccCCCEEEEe-c-----CcEEEEECCCCc-eeE
Q 036605 95 G-------------MASEMKSEMGE----VIREFKA-SEKPISSSAFLCEEKIFALA-S-----SEVRILSLENGE-EVL 149 (340)
Q Consensus 95 g-------------~i~~wd~~~~~----~~~~~~~-~~~~i~~l~~~~~~~~l~~~-~-----~~i~i~d~~~~~-~~~ 149 (340)
. .|++|++.++. .+..... +......+.++|||++|+.. . ..|+++|+.++. ...
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~ 274 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL 274 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence 4 39999987754 2222233 34456789999999988551 1 249999998764 455
Q ss_pred EeecCCCCeEEEEECCCCCEEEEEEcCC---CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeC
Q 036605 150 KFSDDVGPLQYVSASDGAKIIITAGYGE---KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAE 226 (340)
Q Consensus 150 ~~~~~~~~v~~~~~s~~~~~l~s~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~ 226 (340)
.+..+....... ++++|..|+..+..+ +.|..+++ ..+.......+ ..+......+ ++++.+|+....
T Consensus 275 ~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~--~~~~~~~~~~l-~~~~~~~~~~-----s~~g~~lv~~~~ 345 (693)
T 3iuj_A 275 TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDA--ANPGPAHWRDL-IPERQQVLTV-----HSGSGYLFAEYM 345 (693)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEET--TSCCGGGCEEE-ECCCSSCEEE-----EEETTEEEEEEE
T ss_pred EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeC--CCCCccccEEE-ecCCCCEEEE-----EEECCEEEEEEE
Confidence 666666655555 566666666555433 56888887 33322100111 1333332233 677777766655
Q ss_pred CC---cEEEEECCCC
Q 036605 227 SG---VAYSWDLKTV 238 (340)
Q Consensus 227 dg---~i~vwd~~~~ 238 (340)
++ .|++|++...
T Consensus 346 ~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 346 VDATARVEQFDYEGK 360 (693)
T ss_dssp ETTEEEEEEECTTSC
T ss_pred ECCeeEEEEEECCCC
Confidence 43 6888988753
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=9.1e-09 Score=87.54 Aligned_cols=193 Identities=9% Similarity=-0.004 Sum_probs=125.6
Q ss_pred CeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 036605 23 SYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMK 101 (340)
Q Consensus 23 ~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd 101 (340)
-..+.+|+|++ . +++++..++.|..||..+++.. .+. ....+.+++|+++|+++++. .+ .|.+||
T Consensus 50 ~~egp~~~~~~~~---------l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d 115 (326)
T 2ghs_A 50 LGEGPTFDPASGT---------AWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSKQLIAS-DD-GLFLRD 115 (326)
T ss_dssp BEEEEEEETTTTE---------EEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTEEEEEE-TT-EEEEEE
T ss_pred CCcCCeEeCCCCE---------EEEEECCCCEEEEEECCCCcEE-EEE--CCCcceEEEEeCCCeEEEEE-CC-CEEEEE
Confidence 34678999975 5 7778888899999999887643 333 34679999999999876654 44 499999
Q ss_pred CCCCeEEEEeecC----CCCeeEEEEccCCCEEEEec--------CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCE
Q 036605 102 SEMGEVIREFKAS----EKPISSSAFLCEEKIFALAS--------SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKI 169 (340)
Q Consensus 102 ~~~~~~~~~~~~~----~~~i~~l~~~~~~~~l~~~~--------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 169 (340)
..+++........ ...+..++++|+|+++++.. +.|+.++ +++ +..+..+......++|+|+++.
T Consensus 116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 116 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFADISIPNSICFSPDGTT 192 (326)
T ss_dssp TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEEESSEEEEEECTTSCE
T ss_pred CCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeCCCcccCCeEEcCCCCE
Confidence 9888754332211 13478999999999776642 2366666 453 3333333345678999999998
Q ss_pred EEEEEcCCCeEEEEEccCCCC-CccCCcee-eec-CCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 170 IITAGYGEKHLQVWRCDISSK-TVNKGPAL-SMR-HSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 170 l~s~~~~d~~i~iwd~~~~~~-~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
++.+...++.|.+|+++...+ .......+ .+. .......+ .+ .++|.++++...++.|.+|+.
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi--~~-d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGS--VC-DAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEE--EE-CTTSCEEEEEETTTEEEEECT
T ss_pred EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCee--EE-CCCCCEEEEEeCCCEEEEECC
Confidence 877666578999999841133 21111111 111 11112222 23 677777776666788999987
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.8e-09 Score=91.60 Aligned_cols=186 Identities=9% Similarity=0.039 Sum_probs=126.9
Q ss_pred EEEEEcCCCcEEEEEccCC----eeEEEec------CCCCCCeEEEEEecCCCEEEEEeCC------CcEEEEeCCCCeE
Q 036605 44 LLALGTSNGDILAVDVLTG----EMKWKST------GRHPGGLAGLAFAKKGRSLHVVGTN------GMASEMKSEMGEV 107 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~----~~~~~~~------~~h~~~v~~v~~~~~~~~l~s~~~d------g~i~~wd~~~~~~ 107 (340)
+++.|..++.|+++|+.+. +....+. ......-..+...|+| .++++..+ |.|.++|..+++.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 5666778899999998755 5555552 1011134567788999 76666554 7899999999999
Q ss_pred EEEeecCCCC---eeEEEEccCCCEEEEec---------------------CcEEEEECCCCceeEEeecC-C-CCeEEE
Q 036605 108 IREFKASEKP---ISSSAFLCEEKIFALAS---------------------SEVRILSLENGEEVLKFSDD-V-GPLQYV 161 (340)
Q Consensus 108 ~~~~~~~~~~---i~~l~~~~~~~~l~~~~---------------------~~i~i~d~~~~~~~~~~~~~-~-~~v~~~ 161 (340)
+.++.....+ -+.+.|+|+++.+++.+ ..|.+||+.+++.+.++... . .....+
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i 256 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL 256 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence 9998743222 35688899999998863 45999999998877777542 1 234556
Q ss_pred EE--CCCCCEEEEEEc-----CCCeEEEEEccCCCCCccCCceeee-------------------cCCCeeeeeecCCCC
Q 036605 162 SA--SDGAKIIITAGY-----GEKHLQVWRCDISSKTVNKGPALSM-------------------RHSPVAIDCKNSPNG 215 (340)
Q Consensus 162 ~~--s~~~~~l~s~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 215 (340)
.| +|++++++.++. .++.|.+|..+ .+.......+.+ ...+..+.+ +
T Consensus 257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d--~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l-----S 329 (462)
T 2ece_A 257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE--DGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI-----S 329 (462)
T ss_dssp EECSSTTCCEEEEEEEEETTTCCEEEEEEEEE--TTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE-----C
T ss_pred EeeECCCCCEEEEEEeeeccCCCceEEEEEec--CCceeEEEEEeCCCccccccccccccccccCCCceeEEEE-----C
Confidence 56 999999998887 68899887763 121110000000 111223334 8
Q ss_pred CCCCEEEEEeC-CCcEEEEECCC
Q 036605 216 EDGTVILAVAE-SGVAYSWDLKT 237 (340)
Q Consensus 216 ~~~~~l~~~s~-dg~i~vwd~~~ 237 (340)
+||++|+++.. .+.|.+||+..
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEeCCCCEEEEEEecC
Confidence 99999988776 57899999864
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-10 Score=97.47 Aligned_cols=218 Identities=10% Similarity=-0.001 Sum_probs=140.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEc----------CCCcEEEEEccCCeeEEEecC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGT----------SNGDILAVDVLTGEMKWKSTG 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~----------~dg~i~i~d~~~~~~~~~~~~ 70 (340)
|+|+.+++++.++... ..+ .++++||++ +|+++. .++.|.++|..+++.+..+.-
T Consensus 103 VID~~t~~vv~~I~vG----~~P--gia~SpDgk---------~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v 167 (426)
T 3c75_H 103 VIDGSTGRILGMTDGG----FLP--HPVAAEDGS---------FFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL 167 (426)
T ss_dssp EEETTTTEEEEEEEEC----SSC--EEEECTTSS---------CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred EEECCCCEEEEEEECC----CCC--ceEECCCCC---------EEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence 4678888888888722 234 799999997 666665 467899999999998877642
Q ss_pred C---C---CCCeEEEEEecCCCEEEEEeC--CCcEEEEeCCCCeEEEEeecCCC-------CeeEEEEccCCCEEEEec-
Q 036605 71 R---H---PGGLAGLAFAKKGRSLHVVGT--NGMASEMKSEMGEVIREFKASEK-------PISSSAFLCEEKIFALAS- 134 (340)
Q Consensus 71 ~---h---~~~v~~v~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~-------~i~~l~~~~~~~~l~~~~- 134 (340)
. . ......++|+|||++|+.+.. ++.|.++|+.+++.+..+..... .-..+.++++|++++...
T Consensus 168 ~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~ 247 (426)
T 3c75_H 168 PDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFA 247 (426)
T ss_dssp TTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECC
T ss_pred CCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECC
Confidence 1 0 124567899999999999874 57899999999998877654211 011234455555443311
Q ss_pred --------------------------------------CcEEEEECCCCcee--EEeec----------CCCCeEEEEEC
Q 036605 135 --------------------------------------SEVRILSLENGEEV--LKFSD----------DVGPLQYVSAS 164 (340)
Q Consensus 135 --------------------------------------~~i~i~d~~~~~~~--~~~~~----------~~~~v~~~~~s 164 (340)
+.+.+.|+...... ..+.. .......++++
T Consensus 248 ~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s 327 (426)
T 3c75_H 248 DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH 327 (426)
T ss_dssp TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc
Confidence 12444444332211 11100 01112236889
Q ss_pred CCCCEEEEEEc---------CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCC-EEEEEe-CCCcEEEE
Q 036605 165 DGAKIIITAGY---------GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGT-VILAVA-ESGVAYSW 233 (340)
Q Consensus 165 ~~~~~l~s~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~s-~dg~i~vw 233 (340)
+++..++.+.. ..+.|.++|. .+.+....+. .+..+..+.+ ++++. ++++.. .++.|.++
T Consensus 328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~--~T~kvv~~I~--vg~~P~gia~-----spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNA--ETGERINKIE--LGHEIDSINV-----SQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp GGGTEEEEEEEECCTTCTTSCEEEEEEEET--TTCCEEEEEE--EEEEECEEEE-----CCSSSCEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEecccccccccCCCCEEEEEEC--CCCeEEEEEE--CCCCcCeEEE-----ccCCCEEEEEEcCCCCeEEEE
Confidence 99888777643 1357999998 5555444333 3444555555 89998 888888 58999999
Q ss_pred ECCCCCccC
Q 036605 234 DLKTVSQDE 242 (340)
Q Consensus 234 d~~~~~~~~ 242 (340)
|..+.+.+.
T Consensus 399 D~~t~kvv~ 407 (426)
T 3c75_H 399 DAATGEELR 407 (426)
T ss_dssp ETTTCCEEE
T ss_pred ECCCCCEEE
Confidence 999987765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.23 E-value=4.6e-09 Score=88.11 Aligned_cols=185 Identities=10% Similarity=0.050 Sum_probs=112.9
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC---CCCCCeEEEEEecCCCEEEEEeC----
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG---RHPGGLAGLAFAKKGRSLHVVGT---- 93 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~~~---- 93 (340)
...+.+++++|+++ ++++ . ++.|.+||..+++....... .....+++++++|+|+.+++...
T Consensus 53 ~~~~~~i~~~~dG~---------l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~ 121 (297)
T 3g4e_A 53 DAPVSSVALRQSGG---------YVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA 121 (297)
T ss_dssp SSCEEEEEEBTTSS---------EEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB
T ss_pred CCceEEEEECCCCC---------EEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc
Confidence 46789999999999 5554 3 56799999988875432221 01235789999999996665422
Q ss_pred -------CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec---CcEEEEEC--CCCcee-----EEeecCCC
Q 036605 94 -------NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS---SEVRILSL--ENGEEV-----LKFSDDVG 156 (340)
Q Consensus 94 -------dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~--~~~~~~-----~~~~~~~~ 156 (340)
.+.|..++.. ++... +.........++|+|+++.++.++ +.|.+||+ .++... ..+..+..
T Consensus 122 ~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~ 199 (297)
T 3g4e_A 122 PAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ 199 (297)
T ss_dssp TTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGC
T ss_pred cccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCC
Confidence 2345555543 44332 222334568899999999776543 44999987 455432 22233345
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAE 226 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~ 226 (340)
....++++++|...++... .+.|.+||. .+++....+. ........+ +|..+++..|+..+.
T Consensus 200 ~p~g~~~d~~G~lwva~~~-~~~v~~~d~--~tG~~~~~i~---~p~~~~t~~--~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 200 IPDGMCIDAEGKLWVACYN-GGRVIRLDP--VTGKRLQTVK---LPVDKTTSC--CFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEEEBTTSCEEEEEET-TTEEEEECT--TTCCEEEEEE---CSSSBEEEE--EEESGGGCEEEEEEB
T ss_pred CCCeeEECCCCCEEEEEcC-CCEEEEEcC--CCceEEEEEE---CCCCCceEE--EEeCCCCCEEEEEcC
Confidence 6788999999976666444 788999997 4454433332 111233333 442366665554443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-09 Score=93.71 Aligned_cols=192 Identities=9% Similarity=-0.021 Sum_probs=126.0
Q ss_pred EEeeccccccccccCceEEEEEcC-----CCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe---------
Q 036605 27 LACGFVGKKRRKERGTLLLALGTS-----NGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG--------- 92 (340)
Q Consensus 27 l~~sp~~~~~~~~~~~~~l~~g~~-----dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--------- 92 (340)
....|+++ .+++... ++.|.++|..+++.+.++.. ...+ .++++|||+.||+++
T Consensus 38 ~~~~pd~~---------~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v-G~~P--~va~spDG~~lyVan~~~~r~~~G 105 (386)
T 3sjl_D 38 EAPAPDAR---------RVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GFLP--NPVVADDGSFIAHASTVFSRIARG 105 (386)
T ss_dssp CCCCCCTT---------EEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CSSC--EEEECTTSSCEEEEEEEEEETTEE
T ss_pred eccCCCCC---------EEEEEcCcccCCCCEEEEEECCCCeEEEEEEC-CCCC--cEEECCCCCEEEEEcccccccccC
Confidence 44578886 5555544 68999999999998888875 3334 499999999998876
Q ss_pred -CCCcEEEEeCCCCeEEEEeecCC-------CCeeEEEEccCCCEEEEec----CcEEEEECCCCceeEEeecCCCCeEE
Q 036605 93 -TNGMASEMKSEMGEVIREFKASE-------KPISSSAFLCEEKIFALAS----SEVRILSLENGEEVLKFSDDVGPLQY 160 (340)
Q Consensus 93 -~dg~i~~wd~~~~~~~~~~~~~~-------~~i~~l~~~~~~~~l~~~~----~~i~i~d~~~~~~~~~~~~~~~~v~~ 160 (340)
.++.|.+||..+++.+..+.... .....++++|||++++++. +.|.++|+.+++.+.++.... + .
T Consensus 106 ~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~ 182 (386)
T 3sjl_D 106 ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-Y 182 (386)
T ss_dssp EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-E
T ss_pred CCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-c
Confidence 35789999999999988875432 2467899999999987743 349999999999888885321 1 2
Q ss_pred EEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCc--eeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 161 VSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGP--ALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 161 ~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
..+....+.+++.+. ||.+.+.++... +...... .+.....+..... .|..++|.+++ .+.+|.|+++|+...
T Consensus 183 ~~~P~g~~~~~~~~~-DG~~~~v~~~~~-g~v~~~~~~~~~~~~~~~~~~~--~~~~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 183 HIFPTAPDTFFMHCR-DGSLAKVAFGTE-GTPEITHTEVFHPEDEFLINHP--AYSQKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp EEEEEETTEEEEEET-TSCEEEEECCSS-SCCEEEECCCCSCTTSCBCSCC--EEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred eeecCCCceeEEECC-CCCEEEEECCCC-CeEEEeecceeccccccccccc--eeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence 334334455666556 888888887321 2211000 0000001111000 11135665444 677899999998754
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.6e-12 Score=108.90 Aligned_cols=180 Identities=14% Similarity=0.144 Sum_probs=97.8
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC-Cee-EE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEK-PIS-SS 121 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~i~-~l 121 (340)
++++++.||.|+.||..+|+.++++.. +.+.+..+..++..+++++.||.|+.||..+|+.+..+..+.. .+. +.
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp 87 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP 87 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence 699999999999999999999998874 4555555566777788778999999999999987766543211 010 11
Q ss_pred EEccCCCEEEE--ecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceee
Q 036605 122 AFLCEEKIFAL--ASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALS 199 (340)
Q Consensus 122 ~~~~~~~~l~~--~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~ 199 (340)
.+..++ .+++ .++.++.||..+|+.+..+..+. ...++|++..+++++. ++.|..||. .+++........
T Consensus 88 ~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~-dg~v~a~d~--~tG~~~W~~~~~ 159 (369)
T 2hz6_A 88 CRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT-EYTITMYDT--KTRELRWNATYF 159 (369)
T ss_dssp CC------CCCCEEEEEEEEECCC--------------------------EEEEEE-EEEEECCCS--SSSSCCCEEEEE
T ss_pred eEecCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec-CCEEEEEEC--CCCCEEEeEecc
Confidence 111233 3433 44559999999998877665443 2345667788888777 899999998 455543332211
Q ss_pred ecCCCeeeeeecCCCCCCC---CEEEEEeCCCcEEEEECCCCCccC
Q 036605 200 MRHSPVAIDCKNSPNGEDG---TVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~---~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
. . ... .. ..+. ..+++++.||.|+.||..+++.+-
T Consensus 160 ~-~----~~~--~~-~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 160 D-Y----AAS--LP-EDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp E-E----CCB--CC-CCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred c-c----cCc--cc-cCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 0 0 001 11 2221 457778999999999999887654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-08 Score=82.92 Aligned_cols=193 Identities=6% Similarity=0.053 Sum_probs=128.1
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE-EecCCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW-KSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASE 99 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~ 99 (340)
...+.++++.+++. ++++...++.|..||.. ++... .+.. ....+.++++.++++.+++...++.|..
T Consensus 61 ~~~~~~i~~~~~g~---------l~v~~~~~~~v~~~d~~-g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 129 (300)
T 2qc5_A 61 DAKVMCLIVSSLGD---------IWFTENGANKIGKLSKK-GGFTEYPLPQ-PDSGPYGITEGLNGDIWFTQLNGDRIGK 129 (300)
T ss_dssp TCCEEEEEECTTSC---------EEEEETTTTEEEEECTT-SCEEEEECSS-TTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred CCcceeEEECCCCC---------EEEEecCCCeEEEECCC-CCeEEecCCC-CCCCCccceECCCCCEEEEccCCCeEEE
Confidence 35788999999998 77777678899999987 65432 2222 3467899999999987777666789999
Q ss_pred EeCCCCeEEEE-eecCCCCeeEEEEccCCCEEEEe--cCcEEEEECCCCceeE-EeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 100 MKSEMGEVIRE-FKASEKPISSSAFLCEEKIFALA--SSEVRILSLENGEEVL-KFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 100 wd~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
||.. ++.... +......+..+++.++++++++. ++.|..||. +++... ....+...+..+++++++...++ ..
T Consensus 130 ~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~-~~ 206 (300)
T 2qc5_A 130 LTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV-EI 206 (300)
T ss_dssp ECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE-ET
T ss_pred ECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE-cc
Confidence 9987 655422 22234568899999999976665 345999998 554432 12234456889999999976555 44
Q ss_pred CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 176 GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
..+.|.+|+. .+.... .... ........+ .+ .++|..+++...++.|..|+.
T Consensus 207 ~~~~i~~~~~---~g~~~~-~~~~-~~~~~~~~i--~~-d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 207 MGNKIGRITT---TGEISE-YDIP-TPNARPHAI--TA-GKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TTTEEEEECT---TCCEEE-EECS-STTCCEEEE--EE-CSTTCEEEEETTTTEEEEECT
T ss_pred CCCEEEEEcC---CCcEEE-EECC-CCCCCceEE--EE-CCCCCEEEeccCCCeEEEECC
Confidence 3678999986 222111 1100 111122222 23 677776666666788999987
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.19 E-value=8e-09 Score=86.99 Aligned_cols=152 Identities=9% Similarity=-0.037 Sum_probs=106.8
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEM 100 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~w 100 (340)
........|+|+++ .+++++..++.|..|+. +++ ...+.. +...+.+++++++|+++++...++.|.+|
T Consensus 44 ~~~~egp~~~~~g~--------~l~~~d~~~~~i~~~~~-~g~-~~~~~~-~~~~~~gl~~d~dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 44 ATWSEGPAWWEAQR--------TLVWSDLVGRRVLGWRE-DGT-VDVLLD-ATAFTNGNAVDAQQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CSSEEEEEEEGGGT--------EEEEEETTTTEEEEEET-TSC-EEEEEE-SCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CcCccCCeEeCCCC--------EEEEEECCCCEEEEEeC-CCC-EEEEeC-CCCccceeeECCCCCEEEEECCCCEEEEE
Confidence 34567899999985 16777888899999997 454 334443 55678999999999866554556789999
Q ss_pred eCCCCeEEEEeecC----CCCeeEEEEccCCCEEEE----ec---------------CcEEEEECCCCceeEEeecCCCC
Q 036605 101 KSEMGEVIREFKAS----EKPISSSAFLCEEKIFAL----AS---------------SEVRILSLENGEEVLKFSDDVGP 157 (340)
Q Consensus 101 d~~~~~~~~~~~~~----~~~i~~l~~~~~~~~l~~----~~---------------~~i~i~d~~~~~~~~~~~~~~~~ 157 (340)
+.. ++........ ...+..++++|+|.++++ +. +.|+.||..+++.... . ....
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~-~-~~~~ 189 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM-A-DLDH 189 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE-E-EESS
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE-e-cCCC
Confidence 986 6543222111 134678999999998885 11 2388888776654332 2 3345
Q ss_pred eEEEEECCCCCEEEEEEcC-----CCeEEEEEcc
Q 036605 158 LQYVSASDGAKIIITAGYG-----EKHLQVWRCD 186 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~~-----d~~i~iwd~~ 186 (340)
...++|+|+++.|+.+... .+.|.+|++.
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~ 223 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWR 223 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEE
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEec
Confidence 6889999999988886662 2689999984
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.8e-08 Score=81.04 Aligned_cols=194 Identities=9% Similarity=0.079 Sum_probs=130.3
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE-EecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW-KSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
....+.++++.++++ ++++...++.|.+||.. ++... .+.. +...+.+++++++++.+++...++.|.
T Consensus 18 ~~~~p~~i~~d~~g~---------l~v~~~~~~~v~~~~~~-~~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~v~ 86 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK---------VWFTQHKANKISSLDQS-GRIKEFEVPT-PDAKVMCLIVSSLGDIWFTENGANKIG 86 (300)
T ss_dssp TTCCEEEEEECTTSC---------EEEEETTTTEEEEECTT-SCEEEEECSS-TTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCCcceeeECCCCC---------EEEEcCCCCeEEEECCC-CceEEEECCC-CCCcceeEEECCCCCEEEEecCCCeEE
Confidence 456789999999999 77777778999999988 65443 2222 446789999999998777666678999
Q ss_pred EEeCCCCeEEEE-eecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeE-EeecCCCCeEEEEECCCCCEEEEEE
Q 036605 99 EMKSEMGEVIRE-FKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVL-KFSDDVGPLQYVSASDGAKIIITAG 174 (340)
Q Consensus 99 ~wd~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~ 174 (340)
.||.. ++.... .......+.++++.+++.++++.. +.|..||.. ++... .+......+..+++.++++..++ .
T Consensus 87 ~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~-~ 163 (300)
T 2qc5_A 87 KLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFT-E 163 (300)
T ss_dssp EECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEE-E
T ss_pred EECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEE-e
Confidence 99988 654322 222345688999999998887753 459999987 54432 22333467889999999985555 4
Q ss_pred cCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 175 YGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
..++.|..|+. .++... .... ........+ .+ .+++..+++....+.|.+|+.
T Consensus 164 ~~~~~i~~~~~---~g~~~~-~~~~-~~~~~~~~i--~~-d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 164 NQNNSIGRITN---TGKLEE-YPLP-TNAAAPVGI--TS-GNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp TTTTEEEEECT---TCCEEE-EECS-STTCCEEEE--EE-CTTSSEEEEETTTTEEEEECT
T ss_pred cCCCeEEEECC---CCcEEE-eeCC-CCCCCcceE--EE-CCCCCEEEEccCCCEEEEEcC
Confidence 43678888886 222111 1100 111122222 23 567777776666778999987
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=7.8e-10 Score=95.08 Aligned_cols=214 Identities=13% Similarity=0.008 Sum_probs=130.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEc----------CCCcEEEEEccCCeeEEEecC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGT----------SNGDILAVDVLTGEMKWKSTG 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~----------~dg~i~i~d~~~~~~~~~~~~ 70 (340)
|+|+.+++++.++... ..+ .+.++||++ +++++. .++.|.+||+.+++.+.++.-
T Consensus 50 vID~~t~~v~~~i~vG----~~P--~i~~spDg~---------~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v 114 (368)
T 1mda_H 50 VSCAGCGVTLGHSLGA----FLS--LAVAGHSGS---------DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp EEETTTTEEEEEEEEC----TTC--EEEECTTSS---------CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred EEECCCCeEEEEEeCC----CCC--ceEECCCCC---------EEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence 4688899999888722 234 799999997 677665 368899999999998888753
Q ss_pred CC-------CCCeEEEEEecCCCEEEEEeC--CCcEEE--EeCCCCeEEEEeecCCC-Ce------eEEEEccC------
Q 036605 71 RH-------PGGLAGLAFAKKGRSLHVVGT--NGMASE--MKSEMGEVIREFKASEK-PI------SSSAFLCE------ 126 (340)
Q Consensus 71 ~h-------~~~v~~v~~~~~~~~l~s~~~--dg~i~~--wd~~~~~~~~~~~~~~~-~i------~~l~~~~~------ 126 (340)
. ......++|+|||++|+++.. +..|.+ +|+.+ +..+..... .+ .-++++++
T Consensus 115 -~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~v 190 (368)
T 1mda_H 115 -PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAAS 190 (368)
T ss_dssp -TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEE
T ss_pred -CCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEE
Confidence 2 124568999999999999874 457888 99866 222221000 00 00111122
Q ss_pred -------------------------------CCE-EEEecCcEEEEECCCCc--eeEEeec-------C---CCCeEEEE
Q 036605 127 -------------------------------EKI-FALASSEVRILSLENGE--EVLKFSD-------D---VGPLQYVS 162 (340)
Q Consensus 127 -------------------------------~~~-l~~~~~~i~i~d~~~~~--~~~~~~~-------~---~~~v~~~~ 162 (340)
+.. +++..+.+.+.|+.+.. .+..+.. + ......+.
T Consensus 191 d~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~ 270 (368)
T 1mda_H 191 DLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA 270 (368)
T ss_dssp ECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred ECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeE
Confidence 221 11111346666664432 1111110 0 01112268
Q ss_pred ECCCCCEEEEEEc---C-----CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCE-EEEEe-CCCcEEE
Q 036605 163 ASDGAKIIITAGY---G-----EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTV-ILAVA-ESGVAYS 232 (340)
Q Consensus 163 ~s~~~~~l~s~~~---~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~s-~dg~i~v 232 (340)
|+|+++.++.+.. . ++.+.++|+ .+.+....+.+ +..+..+.+ ++|+.+ +++.. .++.|.+
T Consensus 271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~--~t~~vv~~i~v--g~~p~gi~~-----s~Dg~~l~va~~~~~~~VsV 341 (368)
T 1mda_H 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTA--SVGQTSGPISN--GHDSDAIIA-----AQDGASDNYANSAGTEVLDI 341 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEES--SSCCEEECCEE--EEEECEEEE-----CCSSSCEEEEEETTTTEEEE
T ss_pred EcCCCCEEEEEeccccCcccccCCCEEEEEC--CCCeEEEEEEC--CCCcceEEE-----CCCCCEEEEEccCCCCeEEE
Confidence 9999998887543 2 235669998 56555554443 333444555 788874 55555 5899999
Q ss_pred EECCCCCccC
Q 036605 233 WDLKTVSQDE 242 (340)
Q Consensus 233 wd~~~~~~~~ 242 (340)
+|+.+.+.+.
T Consensus 342 ID~~t~kvv~ 351 (368)
T 1mda_H 342 YDAASDQDQS 351 (368)
T ss_dssp EESSSCEEEE
T ss_pred EECCCCcEEE
Confidence 9999987665
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-08 Score=86.15 Aligned_cols=150 Identities=14% Similarity=0.044 Sum_probs=99.4
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC--C-CCCCeEEEEEecCCCEEEEEeC----
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG--R-HPGGLAGLAFAKKGRSLHVVGT---- 93 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--~-h~~~v~~v~~~~~~~~l~s~~~---- 93 (340)
...+.+++|+|+++ ++++. .+| |.+||..+++....... . ....+++++++|+|+.+++...
T Consensus 89 ~~~v~~i~~~~dg~---------l~v~~-~~g-l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~ 157 (326)
T 2ghs_A 89 PFMGSALAKISDSK---------QLIAS-DDG-LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAE 157 (326)
T ss_dssp SSCEEEEEEEETTE---------EEEEE-TTE-EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCC
T ss_pred CCcceEEEEeCCCe---------EEEEE-CCC-EEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCC
Confidence 35789999999998 55544 444 99999988875432221 0 1235889999999987665432
Q ss_pred --CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec---CcEEEEECC--CC-ce-----eEEeecCCCCeEE
Q 036605 94 --NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS---SEVRILSLE--NG-EE-----VLKFSDDVGPLQY 160 (340)
Q Consensus 94 --dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~--~~-~~-----~~~~~~~~~~v~~ 160 (340)
.+.|..++ +++... +.........++|+|+++.++.++ +.|.+||+. ++ .. +..+......+..
T Consensus 158 ~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~g 234 (326)
T 2ghs_A 158 TGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG 234 (326)
T ss_dssp TTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred CCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCe
Confidence 25666666 555433 322334567899999998775543 349999986 55 31 2222223455678
Q ss_pred EEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 161 VSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 161 ~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
++++++|.+.++... ++.|.+|+.
T Consensus 235 i~~d~~G~lwva~~~-~~~v~~~d~ 258 (326)
T 2ghs_A 235 SVCDAEGHIWNARWG-EGAVDRYDT 258 (326)
T ss_dssp EEECTTSCEEEEEET-TTEEEEECT
T ss_pred eEECCCCCEEEEEeC-CCEEEEECC
Confidence 999999976666444 688999986
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-08 Score=84.38 Aligned_cols=201 Identities=5% Similarity=-0.054 Sum_probs=126.0
Q ss_pred CCeEEEEeeccccccccccCceEEEEEc--CCCcEEEEEccCCeeEEEecC------CCCCCeEEEEEecCCCEEEEEeC
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGT--SNGDILAVDVLTGEMKWKSTG------RHPGGLAGLAFAKKGRSLHVVGT 93 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~~~------~h~~~v~~v~~~~~~~~l~s~~~ 93 (340)
.....++++|+|+ ++++.. .++.+.||.+.+++. ..+.. .|-..+.+++++++++++++-..
T Consensus 17 ~~p~~va~~~~g~---------~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g 86 (343)
T 2qe8_A 17 LAPGNITLTPDGR---------LFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNG 86 (343)
T ss_dssp SCEEEEEECTTSC---------EEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECH
T ss_pred CCcceEEECCCCC---------EEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCC
Confidence 5788999999999 777753 234244554446653 33321 24568999999999865444322
Q ss_pred -----CCcEEEEeCCCCeEEEEeecC------CCCeeEEEEccCCCEEEEec------CcEEEEECCCCceeEEeecCC-
Q 036605 94 -----NGMASEMKSEMGEVIREFKAS------EKPISSSAFLCEEKIFALAS------SEVRILSLENGEEVLKFSDDV- 155 (340)
Q Consensus 94 -----dg~i~~wd~~~~~~~~~~~~~------~~~i~~l~~~~~~~~l~~~~------~~i~i~d~~~~~~~~~~~~~~- 155 (340)
++.|.+||+.+++.+..+... ...+..+++++++..++.++ ..|.+||+.+++..+.+..|.
T Consensus 87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 578999999999877766532 23468999998655554432 339999998886655443321
Q ss_pred ----------------------------CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCC-C-----ccCCceeeec
Q 036605 156 ----------------------------GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSK-T-----VNKGPALSMR 201 (340)
Q Consensus 156 ----------------------------~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~-~-----~~~~~~~~~~ 201 (340)
..+..++|+|+++.|+.+......+..++.+.... . ....+.. .+
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g 245 (343)
T 2qe8_A 167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER-YS 245 (343)
T ss_dssp TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE-EE
T ss_pred ccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe-cc
Confidence 23578999999998988776344555554321010 0 0011110 01
Q ss_pred C--CCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 202 H--SPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 202 ~--~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
+ .+.-+.+ +++|..+++...++.|.+||..++
T Consensus 246 ~~g~pdgia~-----d~~G~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 246 EKPICDGISI-----DKDHNIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp ECCSCSCEEE-----CTTCCEEEEEGGGTEEEEEETTTT
T ss_pred cCCCCceEEE-----CCCCCEEEEccCCCeEEEEECCCC
Confidence 1 1122333 678888899888999999998443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-08 Score=85.49 Aligned_cols=181 Identities=9% Similarity=-0.014 Sum_probs=115.7
Q ss_pred EEEEEcC--CC---cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe----------CCCcEEEEeCCCCeEE
Q 036605 44 LLALGTS--NG---DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG----------TNGMASEMKSEMGEVI 108 (340)
Q Consensus 44 ~l~~g~~--dg---~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~dg~i~~wd~~~~~~~ 108 (340)
++++... .+ +|.+||..+++.+..+.. ...+ .++++|||+.|+.+. .++.|.+||..+.+.+
T Consensus 34 ~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~-g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~ 110 (373)
T 2mad_H 34 RSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-GFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI 110 (373)
T ss_pred EEEEeCCcccCCccEEEEEECCCCeEEEEecC-CCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE
Confidence 5666543 33 889999999998887775 3333 999999999999986 3578999999998887
Q ss_pred EEeecC-------CCCeeEEEEccCCCEEEEec----CcEEEEECCCCceeEE-eecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 109 REFKAS-------EKPISSSAFLCEEKIFALAS----SEVRILSLENGEEVLK-FSDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 109 ~~~~~~-------~~~i~~l~~~~~~~~l~~~~----~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
..+... ......++++|||++|+++. ..|.++| .+++.+.. +.. .. ++.+.|++...+.....
T Consensus 111 ~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~ 185 (373)
T 2mad_H 111 ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCA 185 (373)
T ss_pred EEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcC
Confidence 776532 12346899999999998743 3399999 99988776 532 12 24455665444443445
Q ss_pred CCeEEEEEccCCCCCccCCce---eeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 177 EKHLQVWRCDISSKTVNKGPA---LSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
|+.+.+++. .++...... ......+..... .+ .+++..++..+..+.+++.|+...
T Consensus 186 dg~~~~vd~---~g~~~~~~~~~~~~~~~~p~~~~~--~~-~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 186 QGGLAKTDH---AGGAAGAGLVGAMLTAAQNLLTQP--AQ-ANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred CCCEEEEEC---CCcEEEEEeccccccCCcceeecc--ee-EecCCEEEEEcCCceEEEEeccCC
Confidence 899999997 221111000 001111111111 22 334444444557888999998653
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-08 Score=95.00 Aligned_cols=213 Identities=8% Similarity=0.019 Sum_probs=132.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCc-------------EEEEEccCCee--E
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGD-------------ILAVDVLTGEM--K 65 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~-------------i~i~d~~~~~~--~ 65 (340)
|||+.+|+.+.... .......++|+ |++ .|+.++.+.. |++|++.++.. .
T Consensus 159 v~dl~tg~~~~~~~-----~~~k~~~~~Ws-Dg~---------~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~ 223 (693)
T 3iuj_A 159 LMDVESKQPLETPL-----KDVKFSGISWL-GNE---------GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR 223 (693)
T ss_dssp EEETTTCSEEEEEE-----EEEESCCCEEE-TTT---------EEEEEESSCCC-------CCCCEEEEEETTSCGGGCE
T ss_pred EEECCCCCCCcccc-----CCceeccEEEe-CCC---------EEEEEEecCcccccccccCCCcEEEEEECCCCcccce
Confidence 47888887654321 11113568899 998 7888777643 99999877642 2
Q ss_pred EEecC-C-CCCCeEEEEEecCCCEEEEEeC----CCcEEEEeCCCCe-EEEEeecCCCCeeEEEEccCCCEEE-Eec---
Q 036605 66 WKSTG-R-HPGGLAGLAFAKKGRSLHVVGT----NGMASEMKSEMGE-VIREFKASEKPISSSAFLCEEKIFA-LAS--- 134 (340)
Q Consensus 66 ~~~~~-~-h~~~v~~v~~~~~~~~l~s~~~----dg~i~~wd~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~-~~~--- 134 (340)
..+.. . |...+..+.|+|||++|+.... ...|.++|+.++. ....+..+....... +++++..|+ ..+
T Consensus 224 ~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~ 302 (693)
T 3iuj_A 224 LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDA 302 (693)
T ss_dssp EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTC
T ss_pred EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCC
Confidence 23332 1 3445788999999998765432 2589999997763 334455555555444 666666554 332
Q ss_pred --CcEEEEECCCCce--eEEeecCCCCeEEEEECCCCCEEEEEEcCCC--eEEEEEccCCCCCccCCceeeecCCCeeee
Q 036605 135 --SEVRILSLENGEE--VLKFSDDVGPLQYVSASDGAKIIITAGYGEK--HLQVWRCDISSKTVNKGPALSMRHSPVAID 208 (340)
Q Consensus 135 --~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 208 (340)
..|..+|+.++.. ...+..|...+. .|++++.+|+.....++ .|.+|++ ..+. ... +.+.....+..
T Consensus 303 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~--~g~~-~~~--l~~p~~~~~~~ 375 (693)
T 3iuj_A 303 PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDY--EGKR-VRE--VALPGLGSVSG 375 (693)
T ss_dssp TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECT--TSCE-EEE--ECCSSSSEEEE
T ss_pred CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEEC--CCCe-eEE--eecCCCceEEe
Confidence 2399999987654 355666666655 88999999888776455 5777776 3322 111 11222223333
Q ss_pred eecCCCCCCCCEEEEEeCC----CcEEEEECCCCC
Q 036605 209 CKNSPNGEDGTVILAVAES----GVAYSWDLKTVS 239 (340)
Q Consensus 209 ~~~~~~~~~~~~l~~~s~d----g~i~vwd~~~~~ 239 (340)
+ .+ ++++..++....+ +.++.||+.+++
T Consensus 376 ~--~~-~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 376 F--NG-KHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp C--CC-CTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred e--ec-CCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 3 34 5666666555444 789999987653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-08 Score=80.54 Aligned_cols=208 Identities=11% Similarity=0.001 Sum_probs=134.5
Q ss_pred CceeeeeeCCCCCCC-CCeEEEEeeccccccccccCceEEEEEcC--CCcEEEEEccCCeeEEEecCCCCCCeEEEEEec
Q 036605 7 GSLLAEWKQPDGEPV-VSYSCLACGFVGKKRRKERGTLLLALGTS--NGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAK 83 (340)
Q Consensus 7 g~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~ 83 (340)
.+++.++. +.. .....++|+|++. ++++.+. ++.|.++|+.+++.+..+.-........+++.
T Consensus 9 ~~vv~~~p----~~~~~f~~Gl~~~~dg~---------Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~- 74 (266)
T 2iwa_A 9 VEVLNEFP----HDPYAFTQGLVYAENDT---------LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL- 74 (266)
T ss_dssp EEEEEEEE----CCTTCCEEEEEECSTTE---------EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-
T ss_pred ceEEEEEE----CCCCCCcccEEEeCCCe---------EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-
Confidence 34556665 222 3457899999876 5555443 68999999999998887653121223355554
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEeecC--C---
Q 036605 84 KGRSLHVVG-TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSDD--V--- 155 (340)
Q Consensus 84 ~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~--~--- 155 (340)
+..|+.+. .++.+.++|..+.+.+..+... . -....+++||+.++++++ .|.++|..+.+.+..+.-. .
T Consensus 75 -g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~-~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 75 -NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-M-KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV 151 (266)
T ss_dssp -TTEEEEEETTCSEEEEEETTTTEEEEEEECC-S-SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred -CCEEEEEEecCCEEEEEECCCCcEEEEEECC-C-CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence 56676665 4689999999999999888644 1 123446678877766444 4999999998888776421 1
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceee-ec-------CC--CeeeeeecCCCCCCCC-EEEEE
Q 036605 156 GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALS-MR-------HS--PVAIDCKNSPNGEDGT-VILAV 224 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~-------~~--~~~~~~~~~~~~~~~~-~l~~~ 224 (340)
..+..+.|. ++ .+++....++.|.+.|. .+++....+.+. +. .+ .....+ .+ .+++. .++++
T Consensus 152 ~~~nele~~-dg-~lyvn~~~~~~V~vID~--~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGI--a~-~~~~~~lfVTg 224 (266)
T 2iwa_A 152 IRLNELEYI-NG-EVWANIWQTDCIARISA--KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGI--AW-DQENKRIFVTG 224 (266)
T ss_dssp CCEEEEEEE-TT-EEEEEETTSSEEEEEET--TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEE--EE-ETTTTEEEEEE
T ss_pred ccceeEEEE-CC-EEEEecCCCCeEEEEEC--CCCcEEEEEECCCcccccccccccccCceEEE--EE-cCCCCEEEEEC
Confidence 246678888 66 56665655889999998 566554444332 00 01 111222 33 56654 55666
Q ss_pred eCCCcEEEEECCCC
Q 036605 225 AESGVAYSWDLKTV 238 (340)
Q Consensus 225 s~dg~i~vwd~~~~ 238 (340)
...+.+++.++...
T Consensus 225 k~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 225 KLWPKLFEIKLHLV 238 (266)
T ss_dssp TTCSEEEEEEEEEC
T ss_pred CCCCeEEEEEEecc
Confidence 67888999887653
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-08 Score=87.90 Aligned_cols=220 Identities=13% Similarity=0.061 Sum_probs=140.4
Q ss_pred CccCCCCceeeeeeCCCCC---CCCCeEEEEeeccccccccccCceEEEEEcC--CCcEEEEEccCCeeEEEecCCCCCC
Q 036605 1 IWSTNDGSLLAEWKQPDGE---PVVSYSCLACGFVGKKRRKERGTLLLALGTS--NGDILAVDVLTGEMKWKSTGRHPGG 75 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~h~~~ 75 (340)
+||+.+++...++....+. .......++|+|||+ +|+++.. ++.|.++|+.+++.+.++.- .+
T Consensus 113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk---------~lyVan~~~~~~VsVID~~t~~vv~tI~v--~g- 180 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK---------TLLFYQFSPAPAVGVVDLEGKAFKRMLDV--PD- 180 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS---------EEEEEECSSSCEEEEEETTTTEEEEEEEC--CS-
T ss_pred EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC---------EEEEEEcCCCCeEEEEECCCCcEEEEEEC--CC-
Confidence 5788888888777522000 123456799999998 7777653 68999999999998888864 22
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCC-CeEEEEeecC----CCCee-EEEE-ccCCCEEE-EecCcEEEEECCCCc-
Q 036605 76 LAGLAFAKKGRSLHVVGTNGMASEMKSEM-GEVIREFKAS----EKPIS-SSAF-LCEEKIFA-LASSEVRILSLENGE- 146 (340)
Q Consensus 76 v~~v~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~----~~~i~-~l~~-~~~~~~l~-~~~~~i~i~d~~~~~- 146 (340)
. ...+....+.+++.+.||.+.+.++.+ ++........ ..++. ...| .++|++++ +.++.+++.|+.++.
T Consensus 181 ~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~ 259 (386)
T 3sjl_D 181 C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA 259 (386)
T ss_dssp E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC
T ss_pred c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc
Confidence 1 222333455777888899999999876 5543221111 12222 2355 47887654 455669999997664
Q ss_pred -eeEEee----------cCCCCeEEEEECCCCCEEEEEEcC---------CCeEEEEEccCCCCCccCCceeeecCCCee
Q 036605 147 -EVLKFS----------DDVGPLQYVSASDGAKIIITAGYG---------EKHLQVWRCDISSKTVNKGPALSMRHSPVA 206 (340)
Q Consensus 147 -~~~~~~----------~~~~~v~~~~~s~~~~~l~s~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 206 (340)
.+..+. ........+++++++..++..... .+.|.++|+ .+++....+. ++..+..
T Consensus 260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~--~t~kv~~~i~--vg~~~~~ 335 (386)
T 3sjl_D 260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA--KTGERLAKFE--MGHEIDS 335 (386)
T ss_dssp EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET--TTCCEEEEEE--EEEEECE
T ss_pred eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC--CCCeEEEEEE--CCCCcce
Confidence 222222 012334457889999888886431 256888887 5665544443 3444445
Q ss_pred eeeecCCCCCCCC-EEEEEe-CCCcEEEEECCCCCccC
Q 036605 207 IDCKNSPNGEDGT-VILAVA-ESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 207 ~~~~~~~~~~~~~-~l~~~s-~dg~i~vwd~~~~~~~~ 242 (340)
+.+ ++|+. +|++.. .++.|.++|..+++.+.
T Consensus 336 lav-----s~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 336 INV-----SQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp EEE-----CSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EEE-----CCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 555 78886 666654 48999999999887665
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-08 Score=88.81 Aligned_cols=173 Identities=9% Similarity=-0.017 Sum_probs=115.5
Q ss_pred CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeecC-------
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG----------TNGMASEMKSEMGEVIREFKAS------- 114 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~~------- 114 (340)
+.|.++|..+++.+.++.- ...+ .++++||++.|+.+. .++.|.++|..+++.+..+...
T Consensus 99 ~~VsVID~~t~~vv~~I~v-G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDG-GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEETTTTEEEEEEEE-CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEECCCCEEEEEEEC-CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 7999999999999988875 3334 899999999999886 3678999999999988877542
Q ss_pred CCCeeEEEEccCCCEEEEec----CcEEEEECCCCceeEEeecCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEEccCCC
Q 036605 115 EKPISSSAFLCEEKIFALAS----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGA-KIIITAGYGEKHLQVWRCDISS 189 (340)
Q Consensus 115 ~~~i~~l~~~~~~~~l~~~~----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~~d~~i~iwd~~~~~ 189 (340)
......++++|||++++++. +.|.++|+.+++.+..+.... . ....|++ ..+++.+. ||.+.+.++ ..
T Consensus 176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~-dG~~~~V~~--~~ 248 (426)
T 3c75_H 176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCR-DGSLARVDF--AD 248 (426)
T ss_dssp SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEET-TSSEEEEEC--CT
T ss_pred CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcC-CCCEEEEEC--CC
Confidence 13457899999999998743 349999999999888775421 1 2233333 33344333 777777776 22
Q ss_pred CCccCC--ceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 190 KTVNKG--PALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 190 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
++.... ..+.....+..... .+ .+++..++..+..|.|++.|...
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~--~~-~~dg~~~~~~s~~g~V~ViD~~~ 295 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHP--AF-SLRSGRLVWPTYTGKIFQADLTA 295 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCC--EE-CTTTCEEEEEBTTSEEEEEEECS
T ss_pred CcEEEEeeeeeccCCCceeeEe--ee-cCCCCEEEEEeCCCcEEEEeccC
Confidence 221100 01111111111111 22 57777777778889999999864
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-08 Score=87.67 Aligned_cols=208 Identities=11% Similarity=0.021 Sum_probs=136.4
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEe-e-ccccccccccCceEEEEEc------------------CCCcEEEEEccC
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLAC-G-FVGKKRRKERGTLLLALGT------------------SNGDILAVDVLT 61 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~-s-p~~~~~~~~~~~~~l~~g~------------------~dg~i~i~d~~~ 61 (340)
.|+.+.++...+..+ .......+++ + |+++ ++++++ .++.+.++|.++
T Consensus 117 Idl~t~~~~~ii~ip---~g~~phg~~~~~~p~~~---------~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t 184 (595)
T 1fwx_A 117 VRCDVMKCDAILEIP---NAKGIHGLRPQKWPRSN---------YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK 184 (595)
T ss_dssp EETTTTEEEEEEECS---SCCSEEEEEECCSSBCS---------EEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT
T ss_pred EECCCceEeeEEeCC---CCCCCcceeeeecCCCc---------EEEEecccccccCCCCcccccccccCceEEEEECCC
Confidence 356667766644422 2345778887 5 8988 777773 346899999999
Q ss_pred CeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCC--------------------------------------cEEEEeCC
Q 036605 62 GEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG--------------------------------------MASEMKSE 103 (340)
Q Consensus 62 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg--------------------------------------~i~~wd~~ 103 (340)
.+..+.+.- .+.-..++++|+|+++++.+.+. .|.+.|..
T Consensus 185 ~~v~~qI~V--gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~ 262 (595)
T 1fwx_A 185 WEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGR 262 (595)
T ss_dssp TEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECS
T ss_pred CeEEEEEEe--CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCc
Confidence 998888763 12456778999999999988553 36777777
Q ss_pred C--CeE-EEEeecCCCCeeEEEEccCCCEEEEecC---cEEEEECCCCc------------eeEEeecCCCCeEEEEECC
Q 036605 104 M--GEV-IREFKASEKPISSSAFLCEEKIFALASS---EVRILSLENGE------------EVLKFSDDVGPLQYVSASD 165 (340)
Q Consensus 104 ~--~~~-~~~~~~~~~~i~~l~~~~~~~~l~~~~~---~i~i~d~~~~~------------~~~~~~~~~~~v~~~~~s~ 165 (340)
+ ++. +..+... ....++.++|||+++++++. .|.++|+.+.+ ....+. -......++|++
T Consensus 263 ~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~ 340 (595)
T 1fwx_A 263 KEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG 340 (595)
T ss_dssp GGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT
T ss_pred ccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC
Confidence 6 444 3444432 34578999999999988544 39999998653 223332 224578999999
Q ss_pred CCCEEEEEEcCCCeEEEEEccCCC----CCc--cCCceeeecCCCeeeeeec-CCCCCCCCEEEEEeC
Q 036605 166 GAKIIITAGYGEKHLQVWRCDISS----KTV--NKGPALSMRHSPVAIDCKN-SPNGEDGTVILAVAE 226 (340)
Q Consensus 166 ~~~~l~s~~~~d~~i~iwd~~~~~----~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~s~ 226 (340)
+| +++++..-|+.|.+|+++... ++. .....+.....+....... ...++||++|++...
T Consensus 341 dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 341 RG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp TS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 99 888878889999999995310 111 1111222333322222211 112799999998865
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=7.7e-07 Score=73.18 Aligned_cols=199 Identities=11% Similarity=0.015 Sum_probs=123.8
Q ss_pred CeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC-CCcEEEE
Q 036605 23 SYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT-NGMASEM 100 (340)
Q Consensus 23 ~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~~w 100 (340)
....++|++++ . ++++-..++.|..++...+.....+.. ......++++++++..|+.+.. .+.|.++
T Consensus 37 ~~~gi~~d~~~~~---------ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~ 106 (267)
T 1npe_A 37 VIIGLAFDCVDKV---------VYWTDISEPSIGRASLHGGEPTTIIRQ-DLGSPEGIALDHLGRTIFWTDSQLDRIEVA 106 (267)
T ss_dssp EEEEEEEETTTTE---------EEEEETTTTEEEEEESSSCCCEEEECT-TCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cEEEEEEecCCCE---------EEEEECCCCEEEEEecCCCCcEEEEEC-CCCCccEEEEEecCCeEEEEECCCCEEEEE
Confidence 45789999865 5 566666788999999876654333332 3357899999998777776654 5789999
Q ss_pred eCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec-----CcEEEEECCCCceeEEe-ecCCCCeEEEEECCCCCEEEEEE
Q 036605 101 KSEMGEVIREFKASEKPISSSAFLCEEKIFALAS-----SEVRILSLENGEEVLKF-SDDVGPLQYVSASDGAKIIITAG 174 (340)
Q Consensus 101 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-----~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~ 174 (340)
++..................++++|++..|+.++ +.|..+++... ....+ .........+++++++.+|+.+.
T Consensus 107 ~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 107 KMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp ETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred EcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEE
Confidence 9865432222222224578999999765554422 34888887543 22333 22335678999999988888877
Q ss_pred cCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 175 YGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
...+.|.+++++ .... ... ......+ ..+ .. . ++..+++....+.|..+|..+++.+.
T Consensus 186 ~~~~~I~~~~~~--g~~~-~~~-~~~~~~P--~gi--~~-d-~~~lyva~~~~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 186 AGTHRAECLNPA--QPGR-RKV-LEGLQYP--FAV--TS-Y-GKNLYYTDWKTNSVIAMDLAISKEMD 243 (267)
T ss_dssp TTTTEEEEEETT--EEEE-EEE-EECCCSE--EEE--EE-E-TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCEEEEEecC--CCce-EEE-ecCCCCc--eEE--EE-e-CCEEEEEECCCCeEEEEeCCCCCceE
Confidence 768899999973 2211 111 1111112 222 11 2 33344444456789999988765544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.4e-08 Score=84.59 Aligned_cols=157 Identities=10% Similarity=0.002 Sum_probs=106.7
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcC-----CCcEEEEEccCCeeEEEecC-----CCCCCeEEEEEecCCCEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTS-----NGDILAVDVLTGEMKWKSTG-----RHPGGLAGLAFAKKGRSL 88 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~-----dg~i~i~d~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~l 88 (340)
.+-..+..++++++++ ++++... ++.|.+||+.+++.+..+.. .+...+..+++++++..+
T Consensus 64 ~~~~~p~gv~~d~~g~---------L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~ 134 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGI---------VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFV 134 (343)
T ss_dssp CCCSCEEEEEECSSSE---------EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEE
T ss_pred cceeEeeEEEEcCCCc---------EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEE
Confidence 3456889999999998 6666544 57899999999986666542 123457899999876666
Q ss_pred EEEe----CCCcEEEEeCCCCeEEEEeecCC-----------------------------CCeeEEEEccCCCEEEEecC
Q 036605 89 HVVG----TNGMASEMKSEMGEVIREFKASE-----------------------------KPISSSAFLCEEKIFALASS 135 (340)
Q Consensus 89 ~s~~----~dg~i~~wd~~~~~~~~~~~~~~-----------------------------~~i~~l~~~~~~~~l~~~~~ 135 (340)
+.+. .++.|.+||+.+++....+..|. ..+..|+++|+++.|+.++.
T Consensus 135 yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 135 YISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES
T ss_pred EEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC
Confidence 5554 46899999999887665543210 23578999999988876433
Q ss_pred ---cEEEEECC---CCc-----eeE--EeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 136 ---EVRILSLE---NGE-----EVL--KFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 136 ---~i~i~d~~---~~~-----~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
.++.++.. .+. ... ...++......++++++|..+++ ...++.|.+||.
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va-~~~~~~V~~~d~ 276 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVG-DLAHSAIGVITS 276 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEE-EGGGTEEEEEET
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEE-ccCCCeEEEEEC
Confidence 35555532 111 000 11233445677999999976666 444899999996
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-07 Score=88.64 Aligned_cols=183 Identities=13% Similarity=0.112 Sum_probs=117.6
Q ss_pred CCcEEEEEccCCeeEEEecCC-CC-----------------------------CCeEEEEEecCCCEEEEEeCCCc----
Q 036605 51 NGDILAVDVLTGEMKWKSTGR-HP-----------------------------GGLAGLAFAKKGRSLHVVGTNGM---- 96 (340)
Q Consensus 51 dg~i~i~d~~~~~~~~~~~~~-h~-----------------------------~~v~~v~~~~~~~~l~s~~~dg~---- 96 (340)
+|.|+.||..+|+.++++... +. .....++++|++..++.+..++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 689999999999999887521 00 01125788998899999887763
Q ss_pred ---------------EEEEeCCCCeEEEEeecCCC---------CeeEEEEccCCC---EEEEecC--cEEEEECCCCce
Q 036605 97 ---------------ASEMKSEMGEVIREFKASEK---------PISSSAFLCEEK---IFALASS--EVRILSLENGEE 147 (340)
Q Consensus 97 ---------------i~~wd~~~~~~~~~~~~~~~---------~i~~l~~~~~~~---~l~~~~~--~i~i~d~~~~~~ 147 (340)
|..||..+|+.+..+..... +.....+..+|+ .++.++. .++++|..+|+.
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 99999999999888764211 111222223554 5666554 499999999988
Q ss_pred eEEeecCC-C--------------------------------------CeEEEEECCCCCEEEEEEcC------------
Q 036605 148 VLKFSDDV-G--------------------------------------PLQYVSASDGAKIIITAGYG------------ 176 (340)
Q Consensus 148 ~~~~~~~~-~--------------------------------------~v~~~~~s~~~~~l~s~~~~------------ 176 (340)
+....... . .-..++|+|+...+++....
T Consensus 342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~ 421 (689)
T 1yiq_A 342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP 421 (689)
T ss_dssp EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence 74332111 0 01236788887777765321
Q ss_pred --------------------------------CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEE
Q 036605 177 --------------------------------EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAV 224 (340)
Q Consensus 177 --------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 224 (340)
++.|..||+ .+++..-... ...+...-.+ ...+.+++.+
T Consensus 422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~--~tG~~~W~~~--~~~~~~~g~~-----~tagglvf~g 492 (689)
T 1yiq_A 422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP--VKQQAAWEVP--YVTIFNGGTL-----STAGNLVFEG 492 (689)
T ss_dssp CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET--TTTEEEEEEE--ESSSCCCCEE-----EETTTEEEEE
T ss_pred cccccccccccCccccccCcccccCCCCCCCcceeEEEEEC--CCCCeEeEcc--CCCCccCccc-----eECCCEEEEE
Confidence 266888887 4554432222 1111111111 3456788899
Q ss_pred eCCCcEEEEECCCCCccC
Q 036605 225 AESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 225 s~dg~i~vwd~~~~~~~~ 242 (340)
+.||.++.||.++++.+.
T Consensus 493 t~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 493 SADGRVIAYAADTGEKLW 510 (689)
T ss_dssp CTTSEEEEEETTTCCEEE
T ss_pred CCCCcEEEEECCCCccce
Confidence 999999999999988875
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-07 Score=88.17 Aligned_cols=192 Identities=15% Similarity=0.140 Sum_probs=124.8
Q ss_pred EEEEEcC------CCcEEEEEccCCeeEEEecCCCCC-------------------------------CeEEEEEecCCC
Q 036605 44 LLALGTS------NGDILAVDVLTGEMKWKSTGRHPG-------------------------------GLAGLAFAKKGR 86 (340)
Q Consensus 44 ~l~~g~~------dg~i~i~d~~~~~~~~~~~~~h~~-------------------------------~v~~v~~~~~~~ 86 (340)
.+++++. +|.|+.||..+|+.++++...... ....++++|++.
T Consensus 176 ~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~ 255 (677)
T 1kb0_A 176 KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN 255 (677)
T ss_dssp EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT
T ss_pred EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC
Confidence 3555553 689999999999999888641111 113578899999
Q ss_pred EEEEEeCCC-------------------cEEEEeCCCCeEEEEeecCCC---------CeeEEEEccCC---CEEEEecC
Q 036605 87 SLHVVGTNG-------------------MASEMKSEMGEVIREFKASEK---------PISSSAFLCEE---KIFALASS 135 (340)
Q Consensus 87 ~l~s~~~dg-------------------~i~~wd~~~~~~~~~~~~~~~---------~i~~l~~~~~~---~~l~~~~~ 135 (340)
.++.+..++ .|..+|..+|+.+..+..... ....+....+| ..++.++.
T Consensus 256 ~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~ 335 (677)
T 1kb0_A 256 TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPK 335 (677)
T ss_dssp EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCT
T ss_pred EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECC
Confidence 999887664 599999999999888664221 12223333467 55666554
Q ss_pred c--EEEEECCCCceeEEeecCCCC-----------e------------------------EEEEECCCCCEEEEEEcC--
Q 036605 136 E--VRILSLENGEEVLKFSDDVGP-----------L------------------------QYVSASDGAKIIITAGYG-- 176 (340)
Q Consensus 136 ~--i~i~d~~~~~~~~~~~~~~~~-----------v------------------------~~~~~s~~~~~l~s~~~~-- 176 (340)
+ ++++|..+|+.+..+...... + ..++|+|++..+++....
T Consensus 336 ~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~ 415 (677)
T 1kb0_A 336 NGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVP 415 (677)
T ss_dssp TSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECC
T ss_pred CCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcc
Confidence 4 999999999987655422100 0 146788888777775430
Q ss_pred ----------------------------------------CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCC
Q 036605 177 ----------------------------------------EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGE 216 (340)
Q Consensus 177 ----------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (340)
.+.|..||+ .+++..-... ...+.....+ ..
T Consensus 416 ~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~--~tG~~~W~~~--~~~~~~~g~~-----~~ 486 (677)
T 1kb0_A 416 VNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP--VAQKAAWSVE--HVSPWNGGTL-----TT 486 (677)
T ss_dssp CEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET--TTTEEEEEEE--ESSSCCCCEE-----EE
T ss_pred eeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC--CCCcEEeecC--CCCCCcCcce-----Ee
Confidence 267888887 4554432222 1211111111 34
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccCCC
Q 036605 217 DGTVILAVAESGVAYSWDLKTVSQDEKT 244 (340)
Q Consensus 217 ~~~~l~~~s~dg~i~vwd~~~~~~~~~~ 244 (340)
.+..++.++.||.+++||..+++.+..+
T Consensus 487 ~g~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 487 AGNVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCceeeee
Confidence 5667888999999999999998877633
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.97 E-value=7e-08 Score=81.18 Aligned_cols=190 Identities=12% Similarity=0.074 Sum_probs=118.4
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEec---CCCCCCeEEEEEecCCCEEEE----Ee
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKST---GRHPGGLAGLAFAKKGRSLHV----VG 92 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s----~~ 92 (340)
+...+..++|+++|+ ++++...++.|.+|+.. ++...... +.....+++++++++|+.+++ +.
T Consensus 84 ~~~~~~gl~~d~dG~---------l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~ 153 (305)
T 3dr2_A 84 ATAFTNGNAVDAQQR---------LVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGL 153 (305)
T ss_dssp SCSCEEEEEECTTSC---------EEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGG
T ss_pred CCCccceeeECCCCC---------EEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCc
Confidence 345688999999999 66666666889999976 55332221 111235678999999987775 32
Q ss_pred C-------------CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--------CcEEEEECCCCcee--E
Q 036605 93 T-------------NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--------SEVRILSLENGEEV--L 149 (340)
Q Consensus 93 ~-------------dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--------~~i~i~d~~~~~~~--~ 149 (340)
. .+.|..||..+++..... .......++|+|+++.|+.++ +.|++|++..+... .
T Consensus 154 ~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~ 231 (305)
T 3dr2_A 154 RKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRR 231 (305)
T ss_dssp SCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEE
T ss_pred cccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCe
Confidence 1 256888888777644333 334567899999999776532 35999998765311 1
Q ss_pred Ee-ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCC
Q 036605 150 KF-SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESG 228 (340)
Q Consensus 150 ~~-~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg 228 (340)
.+ .........++++++|+..++ .. + .|.+|+. .++....+. ... ....+ +| .+++..|+.++.++
T Consensus 232 ~~~~~~~~~pdgi~~d~~G~lwv~-~~-~-gv~~~~~---~g~~~~~~~--~~~--~~~~~--~f-~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 232 HFASVPDGLPDGFCVDRGGWLWSS-SG-T-GVCVFDS---DGQLLGHIP--TPG--TASNC--TF-DQAQQRLFITGGPC 298 (305)
T ss_dssp EEECCSSSCCCSEEECTTSCEEEC-CS-S-EEEEECT---TSCEEEEEE--CSS--CCCEE--EE-CTTSCEEEEEETTE
T ss_pred EEEECCCCCCCeEEECCCCCEEEe-cC-C-cEEEECC---CCCEEEEEE--CCC--ceeEE--EE-eCCCCEEEEEcCCe
Confidence 22 112344567899999985444 33 4 4888885 333332222 122 22233 44 57888888887765
Q ss_pred cEEEEEC
Q 036605 229 VAYSWDL 235 (340)
Q Consensus 229 ~i~vwd~ 235 (340)
++.+++
T Consensus 299 -l~~~~~ 304 (305)
T 3dr2_A 299 -LWMLPL 304 (305)
T ss_dssp -EEEEEC
T ss_pred -EEEEEC
Confidence 555443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-07 Score=76.60 Aligned_cols=167 Identities=13% Similarity=0.034 Sum_probs=118.9
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+|+.+|+++..+... . ......+++. + + +.++.-.++.+.++|..+.+.+.++... ... ...
T Consensus 49 iD~~tg~v~~~i~l~--~-~~fgeGi~~~--g~~---------lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~--g~g 111 (266)
T 2iwa_A 49 VALQTGKVENIHKMD--D-SYFGEGLTLL--NEK---------LYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--GWG 111 (266)
T ss_dssp EETTTCCEEEEEECC--T-TCCEEEEEEE--TTE---------EEEEETTCSEEEEEETTTTEEEEEEECC-SSS--CCE
T ss_pred EECCCCCEEEEEecC--C-CcceEEEEEe--CCE---------EEEEEecCCEEEEEECCCCcEEEEEECC-CCC--eEE
Confidence 577788888776532 1 1122234444 4 4 5666667899999999999988888642 112 233
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC-----CCeeEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeec
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASE-----KPISSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSD 153 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-----~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~ 153 (340)
+++||+.|+.+..++.|.++|..+.+.+..+.... ..+..+.+. ++...+.. +++|.+.|..+++.+..+..
T Consensus 112 lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 112 LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence 55688888888778999999999998887765322 135677887 67554443 44599999999998877743
Q ss_pred C-------------CCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 154 D-------------VGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 154 ~-------------~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
. ......++|+|+++.++.++...+.+.+.++.
T Consensus 191 ~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 191 PNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp HHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred CCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 1 13558999999998888888778999999984
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.6e-07 Score=79.34 Aligned_cols=168 Identities=11% Similarity=0.007 Sum_probs=113.4
Q ss_pred CcEEEEEccCCeeEEEecCC-CC-CCeEEEEEecCCCEEEEEe-------------------CCCcEEEEeCCCCeEEEE
Q 036605 52 GDILAVDVLTGEMKWKSTGR-HP-GGLAGLAFAKKGRSLHVVG-------------------TNGMASEMKSEMGEVIRE 110 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~-h~-~~v~~v~~~~~~~~l~s~~-------------------~dg~i~~wd~~~~~~~~~ 110 (340)
|.|.++|.++++.+.++... .. ..-+.+.|+|+++.+++.. .+..|.+||+.+++.+.+
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 78999999999999888631 22 2345688999999998874 367999999999988888
Q ss_pred eecCC--CCeeEEEE--ccCCCEEEEecC--------cEEEEECCCCcee--EEe--ecC----------------CCCe
Q 036605 111 FKASE--KPISSSAF--LCEEKIFALASS--------EVRILSLENGEEV--LKF--SDD----------------VGPL 158 (340)
Q Consensus 111 ~~~~~--~~i~~l~~--~~~~~~l~~~~~--------~i~i~d~~~~~~~--~~~--~~~----------------~~~v 158 (340)
+.... .....+.| +|++++++++.. +|.+|....++.. ..+ ... ....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence 77532 23445555 999998876443 3666554443211 111 100 2346
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeec-----------C----CCeeeeeecCCCCCCCCEEEE
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMR-----------H----SPVAIDCKNSPNGEDGTVILA 223 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----------~----~~~~~~~~~~~~~~~~~~l~~ 223 (340)
..+.+++||++|+++....+.|.+||+. ........-.+..+ . .+..+.+ ++||++|++
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~-d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l-----SpDGk~LyV 397 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDIS-NPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI-----SRDGRRVYV 397 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECS-STTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE-----CTTSSEEEE
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEec-CCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEE-----cCCCCEEEE
Confidence 7899999999999999989999999983 11111111111222 1 2455556 899999998
Q ss_pred Ee
Q 036605 224 VA 225 (340)
Q Consensus 224 ~s 225 (340)
+.
T Consensus 398 aN 399 (462)
T 2ece_A 398 TN 399 (462)
T ss_dssp EC
T ss_pred Ec
Confidence 88
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-07 Score=73.04 Aligned_cols=155 Identities=12% Similarity=0.058 Sum_probs=107.5
Q ss_pred eEEEEeeccccccccccCceEEEEEcCCC--cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe-CCCcEEEE
Q 036605 24 YSCLACGFVGKKRRKERGTLLLALGTSNG--DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNGMASEM 100 (340)
Q Consensus 24 v~~l~~sp~~~~~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~~w 100 (340)
...|.|+ ++. ++.+.+.+| .|+++|+++++.+.++.- ..........+++..|+... .++.+.+|
T Consensus 45 tqGL~~~-~~~---------LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 45 TEGFFYR-NGY---------FYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp EEEEEEE-TTE---------EEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred cceEEEE-CCE---------EEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 4678888 667 666766665 999999999998888764 23444433334466777765 47899999
Q ss_pred eCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecC--C---CCeEEEEECCCCCEEEEE
Q 036605 101 KSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDD--V---GPLQYVSASDGAKIIITA 173 (340)
Q Consensus 101 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~--~---~~v~~~~~s~~~~~l~s~ 173 (340)
|..+.+.+.++.... ....+++++..|+..+++ |.++|..+.+.+..+... . ..++.+.|. +| .|++.
T Consensus 113 D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan 187 (262)
T 3nol_A 113 NIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFAN 187 (262)
T ss_dssp ETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEE
T ss_pred ECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEE
Confidence 999999999887543 223445677777765544 999999999888776431 1 334567776 56 46665
Q ss_pred EcCCCeEEEEEccCCCCCccCCce
Q 036605 174 GYGEKHLQVWRCDISSKTVNKGPA 197 (340)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~~~~~ 197 (340)
...++.|.+.|. .+++....+.
T Consensus 188 ~w~~~~I~vIDp--~tG~V~~~Id 209 (262)
T 3nol_A 188 VWQTNKIVRIDP--ETGKVTGIID 209 (262)
T ss_dssp ETTSSEEEEECT--TTCBEEEEEE
T ss_pred EccCCeEEEEEC--CCCcEEEEEE
Confidence 666888999887 5665444333
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-07 Score=83.91 Aligned_cols=187 Identities=11% Similarity=0.071 Sum_probs=129.9
Q ss_pred EEEEEc-CCCcEEEEEccCCeeEEEecCCCCCCeEEEEE-e-cCCCEEEEEe------------------CCCcEEEEeC
Q 036605 44 LLALGT-SNGDILAVDVLTGEMKWKSTGRHPGGLAGLAF-A-KKGRSLHVVG------------------TNGMASEMKS 102 (340)
Q Consensus 44 ~l~~g~-~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~-~-~~~~~l~s~~------------------~dg~i~~wd~ 102 (340)
+|++.. .++.|.+.|+.+.+....+.-.....+..+++ + |+++++++++ .++.+.++|.
T Consensus 103 ~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~ 182 (595)
T 1fwx_A 103 FLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA 182 (595)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET
T ss_pred EEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC
Confidence 555544 46679999999999777443213346889998 5 8999999885 2357999999
Q ss_pred CCCeEEEEeecCCCCeeEEEEccCCCEEEEec----------------------------------------CcEEEEEC
Q 036605 103 EMGEVIREFKASEKPISSSAFLCEEKIFALAS----------------------------------------SEVRILSL 142 (340)
Q Consensus 103 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----------------------------------------~~i~i~d~ 142 (340)
.+.+...++.... ....++++|+|+++++.+ +.|.+.|.
T Consensus 183 ~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~ 261 (595)
T 1fwx_A 183 DKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDG 261 (595)
T ss_dssp TTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEEC
T ss_pred CCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeC
Confidence 9999888877544 457788999999987632 11667777
Q ss_pred CC--Cce-eEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCC----CCc--c--CCceeeecCCCeeeeeec
Q 036605 143 EN--GEE-VLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISS----KTV--N--KGPALSMRHSPVAIDCKN 211 (340)
Q Consensus 143 ~~--~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~----~~~--~--~~~~~~~~~~~~~~~~~~ 211 (340)
.+ ++. +..+.. .....++.++|||+++++++..+.+|.++|+.... ++. . .......+..+....+
T Consensus 262 ~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF-- 338 (595)
T 1fwx_A 262 RKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF-- 338 (595)
T ss_dssp SGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEE--
T ss_pred cccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEE--
Confidence 76 444 344432 23457899999999999999889999999994210 000 0 0111223444555555
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 212 SPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 212 ~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
+++|...++.--|+.|.+||+..
T Consensus 339 ---~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 339 ---DGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ---CTTSEEEEEETTTTEEEEEEHHH
T ss_pred ---CCCCeEEEEEecCCcEEEEEhhH
Confidence 88995556777899999999876
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.5e-07 Score=86.47 Aligned_cols=158 Identities=14% Similarity=0.161 Sum_probs=110.1
Q ss_pred EEEeeccccccccccCceEEEEEcCCC-------------------cEEEEEccCCeeEEEecCCCC--------CCeEE
Q 036605 26 CLACGFVGKKRRKERGTLLLALGTSNG-------------------DILAVDVLTGEMKWKSTGRHP--------GGLAG 78 (340)
Q Consensus 26 ~l~~sp~~~~~~~~~~~~~l~~g~~dg-------------------~i~i~d~~~~~~~~~~~~~h~--------~~v~~ 78 (340)
.+++.|++. ++++++.++ .|..+|..+|+.++.++..+. .....
T Consensus 247 ~~~~d~~~~---------~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l 317 (677)
T 1kb0_A 247 SMTFDAELN---------TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMIL 317 (677)
T ss_dssp CEEEETTTT---------EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEE
T ss_pred ceeEcCCCC---------EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEE
Confidence 467788777 788877664 599999999999998764221 12233
Q ss_pred EEEecCC---CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCC-----------e------------------------eE
Q 036605 79 LAFAKKG---RSLHVVGTNGMASEMKSEMGEVIREFKASEKP-----------I------------------------SS 120 (340)
Q Consensus 79 v~~~~~~---~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-----------i------------------------~~ 120 (340)
+....+| ..++.++.+|.++++|..+|+.+..+...... + ..
T Consensus 318 ~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~ 397 (677)
T 1kb0_A 318 ADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHP 397 (677)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSC
T ss_pred EecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCC
Confidence 3344467 67889999999999999999988765432110 1 15
Q ss_pred EEEccCCCEEEEec---------------------------------------------CcEEEEECCCCceeEEeecCC
Q 036605 121 SAFLCEEKIFALAS---------------------------------------------SEVRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 121 l~~~~~~~~l~~~~---------------------------------------------~~i~i~d~~~~~~~~~~~~~~ 155 (340)
++++|+..++++.. +.|..||+.+++.+-++.. .
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~ 476 (677)
T 1kb0_A 398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-V 476 (677)
T ss_dssp CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-S
T ss_pred ceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-C
Confidence 68889888776521 4499999999988866653 2
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCc
Q 036605 156 GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGP 196 (340)
Q Consensus 156 ~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~ 196 (340)
.++....+..++..++.++. |+.+++||. .+++.+..+
T Consensus 477 ~~~~~g~~~~~g~~v~~g~~-dg~l~a~D~--~tG~~lw~~ 514 (677)
T 1kb0_A 477 SPWNGGTLTTAGNVVFQGTA-DGRLVAYHA--ATGEKLWEA 514 (677)
T ss_dssp SSCCCCEEEETTTEEEEECT-TSEEEEEET--TTCCEEEEE
T ss_pred CCCcCcceEeCCCEEEEECC-CCcEEEEEC--CCCceeeee
Confidence 33444455566777887655 999999998 566554433
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-07 Score=80.86 Aligned_cols=177 Identities=15% Similarity=0.187 Sum_probs=121.3
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAF 123 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~ 123 (340)
.|.+|+.++.|..+|.. ++..+.+.. +...+.++...+++. |+.++.++.|..+|.. ++.+..+......+.++.+
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTEKWRFKT-KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred EEEEEecCCEEEEEcCC-CCEEEEEcC-CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 47788889999999988 777777765 555567777776665 6667888999999998 8877777666667788888
Q ss_pred ccCCCEEEEecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCC
Q 036605 124 LCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHS 203 (340)
Q Consensus 124 ~~~~~~l~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (340)
.+++.+++.. +.|..+| .+++.+..+......+.++...++|.. ..+.. ++.+..++. .+....... ...
T Consensus 185 d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~-~~gl~~~~~---~g~~~~~~~--~~~- 254 (330)
T 3hxj_A 185 GKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSL-DGHLYAINP---DGTEKWRFK--TGK- 254 (330)
T ss_dssp CTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEET-TTEEEEECT---TSCEEEEEE--CSS-
T ss_pred cCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcC-CCeEEEECC---CCCEeEEee--CCC-
Confidence 8888877777 7799999 777777666655566888888888754 44455 677877763 333221111 111
Q ss_pred CeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 204 PVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
...... .. .++ ..|..++.+|.|+.+|. +++
T Consensus 255 ~~~~~~--~~-~~~-g~l~v~t~~ggl~~~d~-~g~ 285 (330)
T 3hxj_A 255 RIESSP--VI-GNT-DTIYFGSYDGHLYAINP-DGT 285 (330)
T ss_dssp CCCSCC--EE-CTT-SCEEEECTTCEEEEECT-TSC
T ss_pred Cccccc--eE-cCC-CeEEEecCCCCEEEECC-CCc
Confidence 111111 11 233 35777888888999985 443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-10 Score=100.01 Aligned_cols=164 Identities=9% Similarity=-0.040 Sum_probs=85.3
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCC-CeE-EE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPG-GLA-GL 79 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~-~v~-~v 79 (340)
||..+|+++..+. . ..+.+..+..+++ ++++++.||.|+.||.++|+.++.+.. +.. .+. ..
T Consensus 24 ~d~~tG~~~W~~~----~--~~~~s~p~~~~g~---------~~v~~s~dg~l~a~d~~tG~~~w~~~~-~~~~~~~~sp 87 (369)
T 2hz6_A 24 VSKRTGSIKWTLK----E--DPVLQVPTHVEEP---------AFLPDPNDGSLYTLGSKNNEGLTKLPF-TIPELVQASP 87 (369)
T ss_dssp EETTTCCEEEEEE----C--CCSCCCC-----C---------CEEECTTTCCEEEC-----CCSEECSC-CHHHHHTTCS
T ss_pred EECCCCCEEEEec----C--CCceecceEcCCC---------EEEEeCCCCEEEEEECCCCceeeeeec-cCccccccCc
Confidence 7888999887776 2 3444555566776 688888999999999999988777764 211 110 11
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEeecCCCC
Q 036605 80 AFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSDDVGP 157 (340)
Q Consensus 80 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~ 157 (340)
.+. ++..+++++.|+.|+.||..+|+.+..+..+. ...++|++..+++++ +.|+.||..+|+.+..+..+.
T Consensus 88 ~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-- 160 (369)
T 2hz6_A 88 CRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-- 160 (369)
T ss_dssp CC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--
T ss_pred eEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--
Confidence 111 34578888889999999999999887776543 234556777776643 459999999998765553211
Q ss_pred eEEEEECCCC---CEEEEEEcCCCeEEEEEccCCCCC
Q 036605 158 LQYVSASDGA---KIIITAGYGEKHLQVWRCDISSKT 191 (340)
Q Consensus 158 v~~~~~s~~~---~~l~s~~~~d~~i~iwd~~~~~~~ 191 (340)
.....+.++. ..+++++. ++.|..||. .+++
T Consensus 161 ~~~~~~~~~~~~~~~v~~~~~-dg~v~a~d~--~tG~ 194 (369)
T 2hz6_A 161 YAASLPEDDVDYKMSHFVSNG-DGLVVTVDS--ESGD 194 (369)
T ss_dssp ECCBCCCCCTTCCCCEEEEET-SCEEEEECT--TTCC
T ss_pred ccCccccCCccccceEEEECC-CCEEEEEEC--CCCc
Confidence 1223344432 35666566 899999998 4444
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-06 Score=74.92 Aligned_cols=179 Identities=12% Similarity=0.135 Sum_probs=111.3
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCe-----
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPI----- 118 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i----- 118 (340)
.+++++.++.|..+|..+|+.++.... ........... +..++.++.++.|..+|..+|+.+..+.......
T Consensus 105 ~v~v~~~~g~l~a~d~~tG~~~W~~~~-~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDGTVAWQTKV-AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC-SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEEeC-CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 588888999999999999998888764 22222222222 4578888999999999999999887765432211
Q ss_pred eEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeecCCCC----------e-EEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 119 SSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSDDVGP----------L-QYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~~~~~----------v-~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
....+. ++ .++.+ ++.+..+|..+++.+..+...... + ....+ .+..++.++. ++.+..+|.
T Consensus 182 ~~~~~~-~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~-~g~l~~~d~ 256 (376)
T 3q7m_A 182 SAPTTA-FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAY-NGNLTALDL 256 (376)
T ss_dssp CCCEEE-TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECT-TSCEEEEET
T ss_pred CCcEEE-CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEec-CcEEEEEEC
Confidence 222232 34 34443 345999999999887665422100 0 11111 2346666566 889999997
Q ss_pred cCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 186 DISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.+++..... .... .... ..++..++.++.+|.|+.+|..+++.+.
T Consensus 257 --~tG~~~w~~----~~~~-~~~~-----~~~~~~l~~~~~~g~l~~~d~~tG~~~w 301 (376)
T 3q7m_A 257 --RSGQIMWKR----ELGS-VNDF-----IVDGNRIYLVDQNDRVMALTIDGGVTLW 301 (376)
T ss_dssp --TTCCEEEEE----CCCC-EEEE-----EEETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred --CCCcEEeec----cCCC-CCCc-----eEECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 444432211 1111 1112 1235678888889999999998876543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.4e-07 Score=77.59 Aligned_cols=186 Identities=15% Similarity=0.144 Sum_probs=120.0
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKS 102 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~ 102 (340)
.+.++...+++. +.+|+.++.|..||.. ++..+.+.. ....+.++.+.+++.. +.++ +.|..+|
T Consensus 138 ~~~~~~~~~~g~----------l~vgt~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~d~~g~l-~v~t--~~l~~~d- 201 (330)
T 3hxj_A 138 IYATPIVSEDGT----------IYVGSNDNYLYAINPD-GTEKWRFKT-NDAITSAASIGKDGTI-YFGS--DKVYAIN- 201 (330)
T ss_dssp CCSCCEECTTSC----------EEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTCCE-EEES--SSEEEEC-
T ss_pred eeeeeEEcCCCE----------EEEEcCCCEEEEECCC-CCEeEEEec-CCCceeeeEEcCCCEE-EEEe--CEEEEEC-
Confidence 345555566666 7778888999999998 887777765 4556777788777764 4445 8899999
Q ss_pred CCCeEEEEeecCCCCeeEEEEccCCCEEEEe-cCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEE
Q 036605 103 EMGEVIREFKASEKPISSSAFLCEEKIFALA-SSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQ 181 (340)
Q Consensus 103 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~ 181 (340)
.+++.+..+......+.++.+.+++.+.+.. ++.+..+|. +++.+..+......+..+.+.+++. |..+.. ++.|.
T Consensus 202 ~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~-~ggl~ 278 (330)
T 3hxj_A 202 PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSY-DGHLY 278 (330)
T ss_dssp TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECT-TCEEE
T ss_pred CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecC-CCCEE
Confidence 7787777766656678889999998777665 455888874 5666666654444445566666664 555455 77888
Q ss_pred EEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 182 VWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 182 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.+|. .++...... ... ..+.. .....++ .|..++.+|.+++.....
T Consensus 279 ~~d~---~g~~~~~~~--~~~-~~~~~---~~~d~~g-~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 279 AINP---DGTEKWNFE--TGS-WIIAT---PVIDENG-TIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp EECT---TSCEEEEEE--CSS-CCCSC---CEECTTC-CEEEECTTSCEEEEEC--
T ss_pred EECC---CCcEEEEEE--cCC-ccccc---eEEcCCC-EEEEEcCCCeEEEEeccc
Confidence 8884 333222111 111 11111 1113444 467789999998887654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.80 E-value=3e-06 Score=67.69 Aligned_cols=166 Identities=11% Similarity=0.051 Sum_probs=108.9
Q ss_pred ceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCC--CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCC
Q 036605 8 SLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSN--GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKG 85 (340)
Q Consensus 8 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~ 85 (340)
+++.+|. .....-.-.|.|++ +. ++.+.+.+ ..|+.+|+++++.+.++.- ............+
T Consensus 10 ~v~~~~p---hd~~~ftqGL~~~~-~~---------LyestG~~g~S~v~~vD~~tgkv~~~~~l--~~~~fgeGi~~~~ 74 (243)
T 3mbr_X 10 RVVKRYP---HDTTAFTEGLFYLR-GH---------LYESTGETGRSSVRKVDLETGRILQRAEV--PPPYFGAGIVAWR 74 (243)
T ss_dssp EEEEEEE---CCTTCCEEEEEEET-TE---------EEEEECCTTSCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEET
T ss_pred EEEEEcC---CCCccccccEEEEC-CE---------EEEECCCCCCceEEEEECCCCCEEEEEeC--CCCcceeEEEEeC
Confidence 4556675 12234456788986 56 56666654 4899999999998887763 2233333333346
Q ss_pred CEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeec--CC---CC
Q 036605 86 RSLHVVG-TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSD--DV---GP 157 (340)
Q Consensus 86 ~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~--~~---~~ 157 (340)
..|+... .++.+.+||..+.+.+.++.....+ .. +.+++..|+.++++ |.++|..+.+.+..+.- +. ..
T Consensus 75 ~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wg--lt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WA--LTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CE--EEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eE--EeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence 6666654 5789999999999999998754432 34 44667766664444 99999999988877643 21 34
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCC
Q 036605 158 LQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKG 195 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~ 195 (340)
++.+.+. +|. +++....+..|.+.|. .+++....
T Consensus 152 lNeLe~~-~G~-lyanvw~s~~I~vIDp--~tG~V~~~ 185 (243)
T 3mbr_X 152 LNELEWV-NGE-LLANVWLTSRIARIDP--ASGKVVAW 185 (243)
T ss_dssp EEEEEEE-TTE-EEEEETTTTEEEEECT--TTCBEEEE
T ss_pred ceeeEEe-CCE-EEEEECCCCeEEEEEC--CCCCEEEE
Confidence 5566665 554 5555555778888887 55554443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.8e-07 Score=83.72 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=107.5
Q ss_pred EEEeeccccccccccCceEEEEEcCCCc-------------------EEEEEccCCeeEEEecCC-CC-------CCeEE
Q 036605 26 CLACGFVGKKRRKERGTLLLALGTSNGD-------------------ILAVDVLTGEMKWKSTGR-HP-------GGLAG 78 (340)
Q Consensus 26 ~l~~sp~~~~~~~~~~~~~l~~g~~dg~-------------------i~i~d~~~~~~~~~~~~~-h~-------~~v~~ 78 (340)
.+++.|+.. ++++++.++. |..+|..+|+.++.++.. |. ..+..
T Consensus 239 ~~~~d~~~~---------~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l 309 (689)
T 1yiq_A 239 SFAYDPELN---------LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMIL 309 (689)
T ss_dssp CEEEETTTT---------EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred ceeEcCCCC---------EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEE
Confidence 567788777 7888888764 999999999999988652 21 12222
Q ss_pred EEEecCCC---EEEEEeCCCcEEEEeCCCCeEEEEeecCCC---------------------------------------
Q 036605 79 LAFAKKGR---SLHVVGTNGMASEMKSEMGEVIREFKASEK--------------------------------------- 116 (340)
Q Consensus 79 v~~~~~~~---~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--------------------------------------- 116 (340)
.....+|+ .++.++.+|.++++|..+|+.+........
T Consensus 310 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~ 389 (689)
T 1yiq_A 310 AELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAH 389 (689)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSS
T ss_pred EeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccccc
Confidence 22233565 788889999999999999998754321110
Q ss_pred CeeEEEEccCCCEEEEe-----------------------------------------------cCcEEEEECCCCceeE
Q 036605 117 PISSSAFLCEEKIFALA-----------------------------------------------SSEVRILSLENGEEVL 149 (340)
Q Consensus 117 ~i~~l~~~~~~~~l~~~-----------------------------------------------~~~i~i~d~~~~~~~~ 149 (340)
.-..++++|+..++++. ++.|..||+.+++.+-
T Consensus 390 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W 469 (689)
T 1yiq_A 390 DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAW 469 (689)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEE
T ss_pred CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEe
Confidence 01136788887777653 1449999999999887
Q ss_pred EeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCc
Q 036605 150 KFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGP 196 (340)
Q Consensus 150 ~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~ 196 (340)
++..+.. ...-.+...+..++.++. |+.++.||. .+++.+..+
T Consensus 470 ~~~~~~~-~~~g~~~tagglvf~gt~-dg~l~a~D~--~tG~~lw~~ 512 (689)
T 1yiq_A 470 EVPYVTI-FNGGTLSTAGNLVFEGSA-DGRVIAYAA--DTGEKLWEQ 512 (689)
T ss_dssp EEEESSS-CCCCEEEETTTEEEEECT-TSEEEEEET--TTCCEEEEE
T ss_pred EccCCCC-ccCccceECCCEEEEECC-CCcEEEEEC--CCCccceee
Confidence 7755432 233344556667777665 999999998 566654433
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-06 Score=68.15 Aligned_cols=167 Identities=10% Similarity=0.038 Sum_probs=110.7
Q ss_pred ceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCE
Q 036605 8 SLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRS 87 (340)
Q Consensus 8 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 87 (340)
+++.+|. .....-...|.|+ ++. ++.+.+.+|.|+++|+++++.+..+ - .. ........+++..
T Consensus 44 ~Vv~~~p---hd~~~ftqGL~~~-~~~---------Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~-~~FgeGit~~g~~ 107 (268)
T 3nok_A 44 HIIREYP---HATNAFTQGLVFH-QGH---------FFESTGHQGTLRQLSLESAQPVWME-R-LG-NIFAEGLASDGER 107 (268)
T ss_dssp EEEEEEE---CCTTCCEEEEEEE-TTE---------EEEEETTTTEEEECCSSCSSCSEEE-E-CT-TCCEEEEEECSSC
T ss_pred EEEEEEc---CCCccccceEEEE-CCE---------EEEEcCCCCEEEEEECCCCcEEeEE-C-CC-CcceeEEEEeCCE
Confidence 3455664 1122334678887 356 7778888899999999999977776 2 22 3333222334556
Q ss_pred EEEEe-CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeec--CC---CCeE
Q 036605 88 LHVVG-TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSD--DV---GPLQ 159 (340)
Q Consensus 88 l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~--~~---~~v~ 159 (340)
|+... .++.+.+||..+.+.+.++...... .. +++++..|+.++++ |.++|..+.+.+..+.- +. ..++
T Consensus 108 Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG-wG--Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN 184 (268)
T 3nok_A 108 LYQLTWTEGLLFTWSGMPPQRERTTRYSGEG-WG--LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN 184 (268)
T ss_dssp EEEEESSSCEEEEEETTTTEEEEEEECSSCC-CC--EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEEccCCEEEEEECCcCcEEEEEeCCCce-eE--EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence 66554 5789999999999999998754322 33 34677777765544 99999999988877643 22 2456
Q ss_pred EEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCce
Q 036605 160 YVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA 197 (340)
Q Consensus 160 ~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~ 197 (340)
.+.|. +| .|++....++.|.+.|. .+++....+.
T Consensus 185 eLe~~-dG-~lyanvw~s~~I~vIDp--~TG~V~~~Id 218 (268)
T 3nok_A 185 ELECA-NG-VIYANIWHSSDVLEIDP--ATGTVVGVID 218 (268)
T ss_dssp EEEEE-TT-EEEEEETTCSEEEEECT--TTCBEEEEEE
T ss_pred ccEEe-CC-EEEEEECCCCeEEEEeC--CCCcEEEEEE
Confidence 67776 66 46665655888999887 5665544444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.75 E-value=9.8e-07 Score=71.09 Aligned_cols=155 Identities=12% Similarity=0.082 Sum_probs=107.6
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+|+.+|+++...... .........+++ + +.++...++.+.+||.++.+.+.++.... .=..+
T Consensus 70 vD~~Tgkv~~~~~l~-----~~~FgeGit~~g~~---------ly~ltw~~~~v~v~D~~t~~~~~ti~~~~--eG~gl- 132 (262)
T 3nol_A 70 VDIESGKTLQQIELG-----KRYFGEGISDWKDK---------IVGLTWKNGLGFVWNIRNLRQVRSFNYDG--EGWGL- 132 (262)
T ss_dssp ECTTTCCEEEEEECC-----TTCCEEEEEEETTE---------EEEEESSSSEEEEEETTTCCEEEEEECSS--CCCCE-
T ss_pred EECCCCcEEEEEecC-----CccceeEEEEeCCE---------EEEEEeeCCEEEEEECccCcEEEEEECCC--CceEE-
Confidence 588889888777632 233333333345 4 55555678999999999999998887522 11333
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC--C---CCeeEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeec
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKAS--E---KPISSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSD 153 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~---~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~ 153 (340)
++++..|+.+..++.|.++|..+.+.+..+... . ..++.+.+. +|+..+.. +..|.+.|..+++.+..+..
T Consensus 133 -t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 133 -THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp -EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred -ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 356888887776788999999999988776542 1 234457776 67655442 44599999999998877643
Q ss_pred C------------CCCeEEEEECCCCCEEEEEEc
Q 036605 154 D------------VGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 154 ~------------~~~v~~~~~s~~~~~l~s~~~ 175 (340)
. ....+.++|+|+++.|+.++.
T Consensus 211 ~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 211 NGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 2 134588999999888888776
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-06 Score=79.23 Aligned_cols=183 Identities=14% Similarity=0.165 Sum_probs=114.5
Q ss_pred CCcEEEEEccCCeeEEEecCC--CCC----------------------------CeEEEEEecCCCEEEEEeCCC-----
Q 036605 51 NGDILAVDVLTGEMKWKSTGR--HPG----------------------------GLAGLAFAKKGRSLHVVGTNG----- 95 (340)
Q Consensus 51 dg~i~i~d~~~~~~~~~~~~~--h~~----------------------------~v~~v~~~~~~~~l~s~~~dg----- 95 (340)
+|.|+.+|..+|+.++++... ... ....++++++...++.+..++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 589999999999999987531 110 112468888888999887765
Q ss_pred --------------cEEEEeCCCCeEEEEeecCC---------CCeeEEEEccCCC---EEEEecCc--EEEEECCCCce
Q 036605 96 --------------MASEMKSEMGEVIREFKASE---------KPISSSAFLCEEK---IFALASSE--VRILSLENGEE 147 (340)
Q Consensus 96 --------------~i~~wd~~~~~~~~~~~~~~---------~~i~~l~~~~~~~---~l~~~~~~--i~i~d~~~~~~ 147 (340)
.|..+|..+|+.+..+.... .+.....+..+|+ .++.++.+ ++++|..+|+.
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 39999999999988876421 2222223334665 45555444 99999999988
Q ss_pred eEEeecCCC------------C------------------------eEEEEECCCCCEEEEEEc----------------
Q 036605 148 VLKFSDDVG------------P------------------------LQYVSASDGAKIIITAGY---------------- 175 (340)
Q Consensus 148 ~~~~~~~~~------------~------------------------v~~~~~s~~~~~l~s~~~---------------- 175 (340)
+..+..... + -..++++|+...++....
T Consensus 337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~ 416 (668)
T 1kv9_A 337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR 416 (668)
T ss_dssp EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence 744322110 0 012567777666554211
Q ss_pred -------------------CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 176 -------------------GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 176 -------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.++.|..||+ .+++..-... ...+.....+ ...+.+++.++.||.++.||..
T Consensus 417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~--~tG~~~W~~~--~~~~~~~~~~-----~t~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 417 KAFNTAAGFADATDVPAAVVSGALLAWDP--VKQKAAWKVP--YPTHWNGGTL-----STAGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp SSCCCSSCGGGCCCCCGGGCEEEEEEEET--TTTEEEEEEE--ESSSCCCCEE-----EETTTEEEEECTTSEEEEEETT
T ss_pred cccccCccccccCCCCCCCccceEEEEeC--CCCcEEEEcc--CCCCCcCcee-----EeCCCEEEEECCcccchhhhhh
Confidence 1367888887 4554432222 1111111111 2346778889999999999999
Q ss_pred CCCccC
Q 036605 237 TVSQDE 242 (340)
Q Consensus 237 ~~~~~~ 242 (340)
+++.+.
T Consensus 488 tG~~l~ 493 (668)
T 1kv9_A 488 KGEALW 493 (668)
T ss_dssp TCCEEE
T ss_pred cChhhe
Confidence 987765
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-06 Score=74.49 Aligned_cols=189 Identities=13% Similarity=0.151 Sum_probs=113.5
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCC--------CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRH--------PGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASE 115 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h--------~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 115 (340)
.+++++.++.|..||.++|+.++.+.... ...+.+. ...++..++.++.++.|..+|..+|+.+.......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~ 133 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG 133 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC
Confidence 58888889999999999999888776411 2233222 22246688888999999999999999887766543
Q ss_pred CCeeEEEEccCCCEEEE-ecCcEEEEECCCCceeEEeecCCCCe-----EEEEECCCCCEEEEEEcCCCeEEEEEccCCC
Q 036605 116 KPISSSAFLCEEKIFAL-ASSEVRILSLENGEEVLKFSDDVGPL-----QYVSASDGAKIIITAGYGEKHLQVWRCDISS 189 (340)
Q Consensus 116 ~~i~~l~~~~~~~~l~~-~~~~i~i~d~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~ 189 (340)
.......+. ++..++. .++.|..+|..+++.+..+....... ...... +..++.+.. ++.+..+|. .+
T Consensus 134 ~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~-~g~l~~~d~--~t 207 (376)
T 3q7m_A 134 EALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGD-NGRVSAVLM--EQ 207 (376)
T ss_dssp CCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCT-TTEEEEEET--TT
T ss_pred ceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcC-CCEEEEEEC--CC
Confidence 322223333 4444433 34459999999998876664332111 122222 335666555 889999997 44
Q ss_pred CCccCCceeeecCCCe------eeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 190 KTVNKGPALSMRHSPV------AIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 190 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
++...... ...+.. ...+.... ...+..++.++.+|.++.+|..+++.+.
T Consensus 208 G~~~w~~~--~~~~~~~~~~~~~~~~~~~p-~~~~~~v~~~~~~g~l~~~d~~tG~~~w 263 (376)
T 3q7m_A 208 GQMIWQQR--ISQATGSTEIDRLSDVDTTP-VVVNGVVFALAYNGNLTALDLRSGQIMW 263 (376)
T ss_dssp CCEEEEEE--CCC-----------CCCCCC-EEETTEEEEECTTSCEEEEETTTCCEEE
T ss_pred CcEEEEEe--cccCCCCcccccccccCCCc-EEECCEEEEEecCcEEEEEECCCCcEEe
Confidence 44322211 111000 00010010 1134567788889999999998876653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=9.2e-06 Score=68.69 Aligned_cols=152 Identities=9% Similarity=0.068 Sum_probs=102.6
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEec--CC-----------------CCCCeEEEEEec
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKST--GR-----------------HPGGLAGLAFAK 83 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~~-----------------h~~~v~~v~~~~ 83 (340)
...+++|.++++ +++++..++.|..|+..+++.. .+. .. ....+.++++.+
T Consensus 20 ~p~~i~~d~~g~---------~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~ 89 (322)
T 2fp8_A 20 APNSFTFDSTNK---------GFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL 89 (322)
T ss_dssp CCCCEECCTTCS---------SEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred CceEEEEcCCCC---------EEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC
Confidence 456788999988 7889999999999998776533 221 10 013578999998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeec-----CCCCeeEEEEcc-CCCEEEEec-------------------CcEE
Q 036605 84 KGRSLHVVGTNGMASEMKSEMGEVIREFKA-----SEKPISSSAFLC-EEKIFALAS-------------------SEVR 138 (340)
Q Consensus 84 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-----~~~~i~~l~~~~-~~~~l~~~~-------------------~~i~ 138 (340)
++..|+.+...+.|..+|..++.. ..+.. .......+++.+ +|.+.++.. +.|.
T Consensus 90 ~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 90 QNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp TTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred CCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEE
Confidence 444566666666688999876542 22211 113467899999 998777632 2388
Q ss_pred EEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 139 ILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 139 i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
.||..+++...... .......+++++++++|+.+....+.|.+|++.
T Consensus 169 ~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~ 215 (322)
T 2fp8_A 169 KYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLE 215 (322)
T ss_dssp EEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred EEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 88987765332222 123456799999999887766657899999983
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.6e-05 Score=63.34 Aligned_cols=195 Identities=10% Similarity=0.052 Sum_probs=116.8
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC-C-CcEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT-N-GMASE 99 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d-g~i~~ 99 (340)
.....++|+++++ ++++-..++.|..||.... ....+. ..+...++++.++|+.+++... + ..|..
T Consensus 32 ~~pegia~~~~g~---------lyv~d~~~~~I~~~d~~g~-~~~~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 32 TFLENLASAPDGT---------IFVTNHEVGEIVSITPDGN-QQIHAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp CCEEEEEECTTSC---------EEEEETTTTEEEEECTTCC-EEEEEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECCCCC---------EEEEeCCCCeEEEECCCCc-eEEEEe--CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 4567899999999 7777778899999997754 333333 2346889999999985554333 2 24777
Q ss_pred EeCCCCeEEEEeec-CCCCeeEEEEccCCCEEEEe--cCcEEEEECCCCce-eEEee---------cCCCCeEEEEECCC
Q 036605 100 MKSEMGEVIREFKA-SEKPISSSAFLCEEKIFALA--SSEVRILSLENGEE-VLKFS---------DDVGPLQYVSASDG 166 (340)
Q Consensus 100 wd~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~-~~~~~---------~~~~~v~~~~~s~~ 166 (340)
+|..+++....... .......++..+++..+++. .+.|+.+|...++. +.... ........+ +++
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d 177 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF 177 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence 88888875433322 12233455656655544443 34588899876421 11100 111234455 788
Q ss_pred CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 167 AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 167 ~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
+.+|+.+....+.|..|+++. .+.......+.....+.-+.+ .++|.++++....+.|.+++..
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~-~g~~~~~~~~~~~~~P~gi~v-----d~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDS-TDKPGEPEIFVEQTNIDDFAF-----DVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCT-TSCBCCCEEEEESCCCSSEEE-----BTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEeCCCCEEEEEEeCC-CCCCCccEEEeccCCCCCeEE-----CCCCCEEEEeCCCCeEEEECCC
Confidence 888888777688999999842 122111111111112223333 5677776666667788888754
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-07 Score=79.60 Aligned_cols=175 Identities=7% Similarity=-0.071 Sum_probs=111.7
Q ss_pred EEEEEcCCC----cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe----------CCCcEEEEeCCCCeEEE
Q 036605 44 LLALGTSNG----DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG----------TNGMASEMKSEMGEVIR 109 (340)
Q Consensus 44 ~l~~g~~dg----~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~dg~i~~wd~~~~~~~~ 109 (340)
.+++-..++ +|.++|..+++.+.++..+. .+ .+.++||++.++++. .++.|.+||+.+++.+.
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~ 110 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence 445544444 88899999999998887633 34 799999999999986 36789999999999999
Q ss_pred EeecC-------CCCeeEEEEccCCCEEEEec----CcEEE--EECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 110 EFKAS-------EKPISSSAFLCEEKIFALAS----SEVRI--LSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 110 ~~~~~-------~~~i~~l~~~~~~~~l~~~~----~~i~i--~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
++..+ ......++++|||++++++. ..+.+ +|+.+ +..+... +. ..+.|++...+.+...
T Consensus 111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~ 183 (368)
T 1mda_H 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSC 183 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCC
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcC
Confidence 88654 12457899999999998753 34778 88877 4444321 11 1223444433333444
Q ss_pred CCeEEEEEccCC---CCCccCC--ceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 177 EKHLQVWRCDIS---SKTVNKG--PALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 177 d~~i~iwd~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
|+.+.+.++... .++.... ..+..+..+. . .+++..++..+. +.+.+.|+..
T Consensus 184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~------~~~~~~~~~vs~-~~V~viD~~~ 240 (368)
T 1mda_H 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q------ANYPGMLVWAVA-SSILQGDIPA 240 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E------ETTTTEEEECBS-SCCEEEECCS
T ss_pred CCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c------cccCCEEEEEcC-CEEEEEECCC
Confidence 888888887310 0211110 0111122222 1 244455555566 8899999864
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.7e-05 Score=66.75 Aligned_cols=200 Identities=9% Similarity=-0.057 Sum_probs=122.6
Q ss_pred CCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe-CCCcEEE
Q 036605 22 VSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNGMASE 99 (340)
Q Consensus 22 ~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~~ 99 (340)
.....++|.+.+ . ++++-...+.|+.+++..+.....+.. .......+++++.+..|+.+. ..+.|.+
T Consensus 116 ~~~~gl~~d~~~~~---------ly~~D~~~~~I~r~~~~g~~~~~~~~~-~~~~p~glavd~~~g~lY~~d~~~~~I~~ 185 (386)
T 3v65_B 116 ENAIALDFHHRREL---------VFWSDVTLDRILRANLNGSNVEEVVST-GLESPGGLAVDWVHDKLYWTDSGTSRIEV 185 (386)
T ss_dssp SCEEEEEEETTTTE---------EEEEETTTTEEEEEETTSCCEEEEECS-SCSCCCCEEEETTTTEEEEEETTTTEEEE
T ss_pred CccEEEEEecCCCe---------EEEEeCCCCcEEEEecCCCCcEEEEeC-CCCCccEEEEEeCCCeEEEEcCCCCeEEE
Confidence 346789998755 5 566666788999999887654433333 333567889998666666654 4578999
Q ss_pred EeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 100 MKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 100 wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
.++........+...-.....+++.|.+..|+.++ ..|..+++..................++|+|++..|+.+..
T Consensus 186 ~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 186 ANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp CBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET
T ss_pred EeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC
Confidence 98875543333333345678999999777665533 34888887654332222333455789999988888888777
Q ss_pred CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 176 GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
..+.|..++++ ...........+.+ +.-+.+ .++..+++-...+.|..++..+++.
T Consensus 266 ~~~~I~~~d~d--G~~~~~~~~~~~~~-P~giav------~~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 266 KHHVIERANLD--GSHRKAVISQGLPH-PFAITV------FEDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp TTTEEEEECTT--SCSCEEEECSSCSS-EEEEEE------ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCEEEEEeCC--CCeeEEEEECCCCC-ceEEEE------ECCEEEEeeCCCCeEEEEECCCCcc
Confidence 67889888874 21111111100111 122222 2334555556677788888555443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=9.1e-05 Score=62.39 Aligned_cols=198 Identities=8% Similarity=-0.019 Sum_probs=121.4
Q ss_pred CCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccC----CeeEEEecCCCCCCeEEEEEecCCCEEEEE-eCCC
Q 036605 22 VSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLT----GEMKWKSTGRHPGGLAGLAFAKKGRSLHVV-GTNG 95 (340)
Q Consensus 22 ~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~dg 95 (340)
.....++|.+.+ + ++++-..++.|..+++.. ......+.. .-....++++++.+..|+.+ ...+
T Consensus 30 ~~p~g~~~d~~~~~---------ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~p~glavd~~~~~ly~~d~~~~ 99 (316)
T 1ijq_A 30 RNVVALDTEVASNR---------IYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLG 99 (316)
T ss_dssp SSEEEEEEETTTTE---------EEEEETTTTEEEEEEC--------CEEEECS-SCSCCCEEEEETTTTEEEEEETTTT
T ss_pred CceEEEEEEeCCCE---------EEEEECCCCcEEEEECCCCCCCcccEEEEeC-CCCCcCEEEEeecCCeEEEEECCCC
Confidence 456789999865 5 666666779999999876 222222332 22356789998766666655 4568
Q ss_pred cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec----CcEEEEECCCCceeEEe-ecCCCCeEEEEECCCCCEE
Q 036605 96 MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS----SEVRILSLENGEEVLKF-SDDVGPLQYVSASDGAKII 170 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l 170 (340)
.|.++++........+.........+++.|.+..++.++ +.|..+++... ....+ ...-.....+++++++..|
T Consensus 100 ~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 100 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEE
T ss_pred EEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEE
Confidence 999999875544333433345678999999766554432 34888887543 33333 2234567899999988888
Q ss_pred EEEEcCCCeEEEEEccCCCCCccCCceeee-c--CCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 171 ITAGYGEKHLQVWRCDISSKTVNKGPALSM-R--HSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 171 ~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
+.+....+.|..+|++ . .....+. .. . ..+.-+.+ . ++..+++-...+.|..++..+++.
T Consensus 179 Y~~D~~~~~I~~~d~d--g-~~~~~~~-~~~~~~~~P~giav-----~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 179 YWVDSKLHSISSIDVN--G-GNRKTIL-EDEKRLAHPFSLAV-----F-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp EEEETTTTEEEEEETT--S-CSCEEEE-ECTTTTSSEEEEEE-----E-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred EEEECCCCeEEEEecC--C-CceEEEe-ecCCccCCcEEEEE-----E-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 8877767899999984 2 1111111 11 0 11222222 2 345555666677888888766543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-05 Score=63.51 Aligned_cols=198 Identities=10% Similarity=0.083 Sum_probs=124.5
Q ss_pred CCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 19 EPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
+....+..++|.|++ + ++++...++.|..+|.. ++.+.++.-.-....-.|++.+++.++++.-.++.+
T Consensus 24 g~~~~lSGla~~~~~~~---------L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l 93 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNT---------LFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAI 93 (255)
T ss_dssp TCCSCEEEEEEETTTTE---------EEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEE
T ss_pred CcccCcceeEEeCCCCE---------EEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcE
Confidence 455689999999986 5 66667788999999998 887777643133568889999888766665567888
Q ss_pred EEEeCCCCeE---EEEee------cCCCCeeEEEEccCCCEEEEec-Cc-EEEEECC---CCceeEEee-------cCCC
Q 036605 98 SEMKSEMGEV---IREFK------ASEKPISSSAFLCEEKIFALAS-SE-VRILSLE---NGEEVLKFS-------DDVG 156 (340)
Q Consensus 98 ~~wd~~~~~~---~~~~~------~~~~~i~~l~~~~~~~~l~~~~-~~-i~i~d~~---~~~~~~~~~-------~~~~ 156 (340)
.++++..... +.... ........|+++|.+..|+++. +. ..+|.+. ....+..+. .+..
T Consensus 94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence 8888765432 22221 1234568999999987665533 32 3444432 111121111 1335
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeec--------CCCeeeeeecCCCCCCCCEEEEEeCCC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMR--------HSPVAIDCKNSPNGEDGTVILAVAESG 228 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~s~dg 228 (340)
.+..++++|....++..+...+.+.++|. .++....+.+.-+ ..+.-+.+ .++|. |+..++.+
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~---~g~~~~~~~L~~g~~~l~~~~~qpEGia~-----d~~G~-lyIvsE~n 244 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRALQEVTL---VGEVIGEMSLTKGSRGLSHNIKQAEGVAM-----DASGN-IYIVSEPN 244 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEECT---TCCEEEEEECSTTGGGCSSCCCSEEEEEE-----CTTCC-EEEEETTT
T ss_pred CceeEEEcCCCCeEEEEECCCCeEEEEcC---CCCEEEEEEcCCccCCcccccCCCCeeEE-----CCCCC-EEEEcCCc
Confidence 67899999987777666776888888886 3333333332211 12233334 67776 55557777
Q ss_pred cEEEEEC
Q 036605 229 VAYSWDL 235 (340)
Q Consensus 229 ~i~vwd~ 235 (340)
.++.|.-
T Consensus 245 ~~y~f~~ 251 (255)
T 3qqz_A 245 RFYRFTP 251 (255)
T ss_dssp EEEEEEC
T ss_pred eEEEEEe
Confidence 7777653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.9e-06 Score=64.68 Aligned_cols=155 Identities=12% Similarity=0.116 Sum_probs=106.7
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+|+.+|+++.....+ .........+.+ + +..+...++.+.+||..+.+.+.++... +.=..++
T Consensus 48 vD~~tgkv~~~~~l~-----~~~fgeGi~~~~~~---------ly~ltw~~~~v~v~D~~tl~~~~ti~~~--~~Gwglt 111 (243)
T 3mbr_X 48 VDLETGRILQRAEVP-----PPYFGAGIVAWRDR---------LIQLTWRNHEGFVYDLATLTPRARFRYP--GEGWALT 111 (243)
T ss_dssp EETTTCCEEEEEECC-----TTCCEEEEEEETTE---------EEEEESSSSEEEEEETTTTEEEEEEECS--SCCCEEE
T ss_pred EECCCCCEEEEEeCC-----CCcceeEEEEeCCE---------EEEEEeeCCEEEEEECCcCcEEEEEeCC--CCceEEe
Confidence 577888888777633 222222223334 4 5666677899999999999999888752 2224444
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC-----CCeeEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeec
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASE-----KPISSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSD 153 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-----~~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~ 153 (340)
+++..|+.+..++.|.++|..+.+.+..+.... ..+..+.+. +|+..+.. +..|.+.|..+++.+..+..
T Consensus 112 --~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 112 --SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp --ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred --eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 467778877778899999999999887765422 234556655 56555442 44499999999998877641
Q ss_pred C-------------CCCeEEEEECCCCCEEEEEEc
Q 036605 154 D-------------VGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 154 ~-------------~~~v~~~~~s~~~~~l~s~~~ 175 (340)
. ....+.++++|++..|+.++.
T Consensus 189 ~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 189 QALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp GGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 1 135688999998888888776
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.61 E-value=0.00013 Score=62.42 Aligned_cols=199 Identities=9% Similarity=-0.054 Sum_probs=120.6
Q ss_pred CeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe-CCCcEEEE
Q 036605 23 SYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNGMASEM 100 (340)
Q Consensus 23 ~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~~w 100 (340)
....++|.+.+ . ++.+-...+.|+.+++..+.....+.. .......+++.+.+..|+.+. ..+.|.+.
T Consensus 74 ~~~~l~~d~~~~~---------ly~~D~~~~~I~r~~~~g~~~~~~~~~-~~~~p~glavd~~~g~ly~~d~~~~~I~~~ 143 (349)
T 3v64_C 74 NAIALDFHHRREL---------VFWSDVTLDRILRANLNGSNVEEVVST-GLESPGGLAVDWVHDKLYWTDSGTSRIEVA 143 (349)
T ss_dssp CEEEEEEETTTTE---------EEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccccE---------EEEEeccCCceEEEecCCCCceEEEeC-CCCCccEEEEecCCCeEEEEcCCCCeEEEE
Confidence 46788998765 4 555666778899999887654433332 334567899998666666554 45789999
Q ss_pred eCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 101 KSEMGEVIREFKASEKPISSSAFLCEEKIFALAS----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 101 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
++........+...-.....++++|.+..|+..+ ..|..+++........+.........+++++++..|+.+...
T Consensus 144 ~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 144 NLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp ETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred cCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECC
Confidence 9875543333333345678999999766665432 448888876543222222234567899999988888887776
Q ss_pred CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 177 EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 177 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
.+.|..++++ ...........+.+ +.-+.+ .++..+++-...+.|..++..+++.
T Consensus 224 ~~~I~~~~~d--G~~~~~~~~~~~~~-P~giav------~~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 224 HHVIERANLD--GSHRKAVISQGLPH-PFAITV------FEDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp TTEEEEEETT--SCSCEEEECSSCSS-EEEEEE------ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCEEEEEeCC--CCceEEEEeCCCCC-ceEEEE------ECCEEEEecCCCCeEEEEEccCCCc
Confidence 7889999974 21111111100111 122222 2334455555667787777555443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.60 E-value=0.0002 Score=62.45 Aligned_cols=204 Identities=7% Similarity=-0.066 Sum_probs=125.0
Q ss_pred CCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCC----eeEEEecCCCCCCeEEEEEecCCCEEEEEe-CCC
Q 036605 22 VSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTG----EMKWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNG 95 (340)
Q Consensus 22 ~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~----~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg 95 (340)
..+..|+|++.+ + ++.+-...+.|+.+++... .....+.. .......+++.+.+..|+.+. ..+
T Consensus 112 ~~~~~l~~d~~~~~---------lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~p~glavD~~~~~lY~~d~~~~ 181 (400)
T 3p5b_L 112 RNVVALDTEVASNR---------IYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLG 181 (400)
T ss_dssp SCEEEEEEETTTTE---------EEEEETTTTEEEEEEC------CCCEEEECS-SCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CcceEEeeeeccCc---------eEEEecCCCeEEEEEcccCCCCCcceEEEeC-CCCCcccEEEEecCCceEEEECCCC
Confidence 467789999865 4 5556567788998987652 22223332 345678999998666666654 468
Q ss_pred cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEE
Q 036605 96 MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIII 171 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 171 (340)
.|.+.++........+...-.....|++.|.+..|+.++ ..|...++........+...-.....|++++++..|+
T Consensus 182 ~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY 261 (400)
T 3p5b_L 182 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 261 (400)
T ss_dssp EEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred eEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEE
Confidence 899999886655444544445678999999766665533 3488888865433333333345778999999888888
Q ss_pred EEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 172 TAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 172 s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
.+....+.|..+|++ .. ....+............+ .. ..+..+++-...+.|..++..+++...
T Consensus 262 ~aD~~~~~I~~~d~d--G~-~~~~~~~~~~~l~~P~gl--~v--~~~~lywtd~~~~~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 262 WVDSKLHSISSIDVN--GG-NRKTILEDEKRLAHPFSL--AV--FEDKVFWTDIINEAIFSANRLTGSDVN 325 (400)
T ss_dssp EEETTTTEEEEEETT--SC-CCEEEEECSSTTSSEEEE--EE--ETTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred EEECCCCEEEEEeCC--CC-ccEEEEeCCCCCCCCEEE--EE--eCCEEEEecCCCCeEEEEEcCCCCceE
Confidence 877767889999974 22 111111100111112222 11 233445555666788888876665443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-05 Score=72.73 Aligned_cols=190 Identities=14% Similarity=0.112 Sum_probs=115.5
Q ss_pred EEEEEcC------CCcEEEEEccCCeeEEEecCCCCC------------------------------------Ce-EEEE
Q 036605 44 LLALGTS------NGDILAVDVLTGEMKWKSTGRHPG------------------------------------GL-AGLA 80 (340)
Q Consensus 44 ~l~~g~~------dg~i~i~d~~~~~~~~~~~~~h~~------------------------------------~v-~~v~ 80 (340)
.+++++. +|.|+.+|..+|+.++++...... .+ ..++
T Consensus 162 ~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a 241 (571)
T 2ad6_A 162 TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYA 241 (571)
T ss_dssp EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCE
T ss_pred EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEE
Confidence 3556654 799999999999999887641110 00 2356
Q ss_pred EecCCCEEEEEeCC----------------CcEEEEeCCCCeEEEEeecCCC------CeeE---EEEccCCC---EEEE
Q 036605 81 FAKKGRSLHVVGTN----------------GMASEMKSEMGEVIREFKASEK------PISS---SAFLCEEK---IFAL 132 (340)
Q Consensus 81 ~~~~~~~l~s~~~d----------------g~i~~wd~~~~~~~~~~~~~~~------~i~~---l~~~~~~~---~l~~ 132 (340)
+.++...++.+..+ +.|..+|..+|+.+..+..... .+.. +....+|+ .++.
T Consensus 242 ~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~ 321 (571)
T 2ad6_A 242 YDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSH 321 (571)
T ss_dssp EETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEE
T ss_pred EcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEE
Confidence 67777777776542 3599999999999887753211 1111 22234674 4445
Q ss_pred ecC--cEEEEECCCCceeEEeecCC-------------CCe--------------------------EEEEECCCCCEEE
Q 036605 133 ASS--EVRILSLENGEEVLKFSDDV-------------GPL--------------------------QYVSASDGAKIII 171 (340)
Q Consensus 133 ~~~--~i~i~d~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~s~~~~~l~ 171 (340)
++. .++++|..+|+.+..+.... .++ ..++|+|+...++
T Consensus 322 ~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~y 401 (571)
T 2ad6_A 322 IDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLY 401 (571)
T ss_dssp ECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEE
T ss_pred eCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEE
Confidence 444 49999999998876553221 011 2356778777776
Q ss_pred EEEc------------------------------------CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCC
Q 036605 172 TAGY------------------------------------GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNG 215 (340)
Q Consensus 172 s~~~------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
.... .++.|..||+ .+++..-... .........+ .
T Consensus 402 v~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~--~tG~~~W~~~--~~~~~~~~~~-----~ 472 (571)
T 2ad6_A 402 AGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL--TTGKAKWTKW--EKFAAWGGTL-----Y 472 (571)
T ss_dssp EEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT--TTCCEEEEEE--ESSCCCSBCE-----E
T ss_pred EEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC--CCCCEEEEec--CCCCccceeE-----E
Confidence 6542 2467777777 4444322221 1111111001 1
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 216 EDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 216 ~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
..+..++.++.||.|+.||..+++.+.
T Consensus 473 t~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 473 TKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 234567779999999999999988776
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-05 Score=64.71 Aligned_cols=154 Identities=14% Similarity=0.053 Sum_probs=106.2
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
+|+.+|+++..+. . ......-..+++ + +..+...++.+.+||.++.+.+.++... +.-..++
T Consensus 80 iD~~Tgkv~~~~l-~-----~~~FgeGit~~g~~---------Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt 142 (268)
T 3nok_A 80 LSLESAQPVWMER-L-----GNIFAEGLASDGER---------LYQLTWTEGLLFTWSGMPPQRERTTRYS--GEGWGLC 142 (268)
T ss_dssp CCSSCSSCSEEEE-C-----TTCCEEEEEECSSC---------EEEEESSSCEEEEEETTTTEEEEEEECS--SCCCCEE
T ss_pred EECCCCcEEeEEC-C-----CCcceeEEEEeCCE---------EEEEEccCCEEEEEECCcCcEEEEEeCC--CceeEEe
Confidence 5788888777662 2 122221123334 4 6666667899999999999999888752 2224444
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC--C---CeeEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeec
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASE--K---PISSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSD 153 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~---~i~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~ 153 (340)
++++.|+.+..++.|.++|..+.+.+..+.... . .+..+.+. +|+..+.. +..|.+.|..+++.+..+..
T Consensus 143 --~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 143 --YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp --EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred --cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 468888888778999999999999888765422 1 34566766 66655443 44499999999998876642
Q ss_pred C-------------CCCeEEEEECCCCCEEEEEEc
Q 036605 154 D-------------VGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 154 ~-------------~~~v~~~~~s~~~~~l~s~~~ 175 (340)
. ....+.++++|++..|+.++.
T Consensus 220 ~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 220 SALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp HHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 1 135688999998877777665
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=9.8e-05 Score=60.44 Aligned_cols=150 Identities=8% Similarity=-0.058 Sum_probs=97.4
Q ss_pred CCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC---CcE
Q 036605 22 VSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN---GMA 97 (340)
Q Consensus 22 ~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---g~i 97 (340)
.....+++.|++ . ++++-...+.|.+++.........+.. .......++++|++..|+.+... +.|
T Consensus 79 ~~p~~ia~d~~~~~---------lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~~P~~i~vd~~~g~lyv~~~~~~~~~I 148 (267)
T 1npe_A 79 GSPEGIALDHLGRT---------IFWTDSQLDRIEVAKMDGTQRRVLFDT-GLVNPRGIVTDPVRGNLYWTDWNRDNPKI 148 (267)
T ss_dssp CCEEEEEEETTTTE---------EEEEETTTTEEEEEETTSCSCEEEECS-SCSSEEEEEEETTTTEEEEEECCSSSCEE
T ss_pred CCccEEEEEecCCe---------EEEEECCCCEEEEEEcCCCCEEEEEEC-CCCCccEEEEeeCCCEEEEEECCCCCcEE
Confidence 456789999865 5 555666778999999865432222222 22467899999987777776643 688
Q ss_pred EEEeCCCCeEEEEe-ecCCCCeeEEEEccCCCEEEEec---CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEE
Q 036605 98 SEMKSEMGEVIREF-KASEKPISSSAFLCEEKIFALAS---SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 98 ~~wd~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 173 (340)
..+++.... ...+ .........++++|++..|+.++ +.|.++|+........+.. ......+++. +.+++.+
T Consensus 149 ~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva 224 (267)
T 1npe_A 149 ETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYT 224 (267)
T ss_dssp EEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEE
T ss_pred EEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEE
Confidence 888876433 2222 22334578999999887776644 3499999876533333332 2334566654 4567776
Q ss_pred EcCCCeEEEEEc
Q 036605 174 GYGEKHLQVWRC 185 (340)
Q Consensus 174 ~~~d~~i~iwd~ 185 (340)
....+.|.++|.
T Consensus 225 ~~~~~~v~~~d~ 236 (267)
T 1npe_A 225 DWKTNSVIAMDL 236 (267)
T ss_dssp ETTTTEEEEEET
T ss_pred ECCCCeEEEEeC
Confidence 765789999987
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.51 E-value=3e-05 Score=68.29 Aligned_cols=151 Identities=8% Similarity=-0.015 Sum_probs=98.6
Q ss_pred CeEEEEeec-cccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC-C----c
Q 036605 23 SYSCLACGF-VGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN-G----M 96 (340)
Q Consensus 23 ~v~~l~~sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-g----~ 96 (340)
....|+|+| ++. .|+++...+.|+.+|+..+....... .......++|+++++.|+.+... + .
T Consensus 138 ~P~~lavdp~~~g---------~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 138 GAVWLSFDPKNHN---------HLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPN 206 (430)
T ss_dssp CCCEEEEETTEEE---------EEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred CCCEEEECCCCCC---------eEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccce
Confidence 456889998 444 35555444889999998776443333 44568999999999977777652 1 3
Q ss_pred EEEEeCCCCeEE--EEeecCCCCeeEEEEcc-CCCEEEE--ecCcEEEEECCCCceeEEeec-CCCCeEEEEECCCCCEE
Q 036605 97 ASEMKSEMGEVI--REFKASEKPISSSAFLC-EEKIFAL--ASSEVRILSLENGEEVLKFSD-DVGPLQYVSASDGAKII 170 (340)
Q Consensus 97 i~~wd~~~~~~~--~~~~~~~~~i~~l~~~~-~~~~l~~--~~~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l 170 (340)
+.+++. .+... ..+.. ......++++| ++.++++ ..+.|..++...+.....+.. .......++|+|++++|
T Consensus 207 v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 207 NYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp EEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred EEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 444443 23211 22222 23457889999 6666655 334599999987654222221 22456789999999977
Q ss_pred EEEEcCCCeEEEEEcc
Q 036605 171 ITAGYGEKHLQVWRCD 186 (340)
Q Consensus 171 ~s~~~~d~~i~iwd~~ 186 (340)
+.+....+.|..++.+
T Consensus 285 yv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEECCCCEEEEEeCC
Confidence 7777768899999875
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-05 Score=76.63 Aligned_cols=149 Identities=12% Similarity=0.054 Sum_probs=91.5
Q ss_pred CeEEEEee-ccccccccccCceEEEEEcC-CC----cEEEEEccCC-eeEE-EecCCCCCCeEEEEEecCCCEEEEEeCC
Q 036605 23 SYSCLACG-FVGKKRRKERGTLLLALGTS-NG----DILAVDVLTG-EMKW-KSTGRHPGGLAGLAFAKKGRSLHVVGTN 94 (340)
Q Consensus 23 ~v~~l~~s-p~~~~~~~~~~~~~l~~g~~-dg----~i~i~d~~~~-~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~~~d 94 (340)
.+...+|| |||+ +||.+.. +| .|+++|+.++ +.+. .+. .....++|+|||+.|+....|
T Consensus 175 ~~~~~~~S~PDG~---------~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHD---------LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS----GTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTC---------EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE----EECSCCEECSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCC---------EEEEEEeCCCCceEEEEEEECCCCCEeCCcccc----CceeeEEEecCCCEEEEEEEC
Confidence 67889999 9998 7775443 23 4999999998 6321 111 123468899999888777655
Q ss_pred -----CcEEEEeCCCCeE--EEEeec-CCCCeeEEEEccCCCEEEEec-----CcEEEEECCCCc-ee--EEe-ecCCCC
Q 036605 95 -----GMASEMKSEMGEV--IREFKA-SEKPISSSAFLCEEKIFALAS-----SEVRILSLENGE-EV--LKF-SDDVGP 157 (340)
Q Consensus 95 -----g~i~~wd~~~~~~--~~~~~~-~~~~i~~l~~~~~~~~l~~~~-----~~i~i~d~~~~~-~~--~~~-~~~~~~ 157 (340)
..|.++++.++.. ...+.. .......+.|+|||++|+... ..|+++|+.++. .. ..+ ......
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 2688888877641 222322 223456789999999887622 129999998762 22 333 233345
Q ss_pred eEEEEECCCCCEEEEEEcCC--C--eEEEEEc
Q 036605 158 LQYVSASDGAKIIITAGYGE--K--HLQVWRC 185 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~~d--~--~i~iwd~ 185 (340)
..++.|+. |..|+..+..+ + .|..+++
T Consensus 322 ~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~ 352 (751)
T 2xe4_A 322 RYDVQMHG-TSHLVILTNEGGAVNHKLLIAPR 352 (751)
T ss_dssp CEEEEEET-TTEEEEEECTTTCTTCEEEEEET
T ss_pred eEEEeeee-CCEEEEEeCCCCCCCcEEEEEcC
Confidence 55555544 44544444433 3 4555554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4e-05 Score=70.23 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=71.8
Q ss_pred EEEEEc------CCCcEEEEEccCCeeEEEecCCCCC------------------------------------Ce-EEEE
Q 036605 44 LLALGT------SNGDILAVDVLTGEMKWKSTGRHPG------------------------------------GL-AGLA 80 (340)
Q Consensus 44 ~l~~g~------~dg~i~i~d~~~~~~~~~~~~~h~~------------------------------------~v-~~v~ 80 (340)
.+++++ .+|.|+.+|..+|+.++++...... .+ ..++
T Consensus 168 ~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a 247 (599)
T 1w6s_A 168 KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYA 247 (599)
T ss_dssp EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCE
T ss_pred EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCcccccee
Confidence 355555 3899999999999999987641110 00 1346
Q ss_pred EecCCCEEEEEeCC----------------CcEEEEeCCCCeEEEEeecCCCC------e---eEEEEc-cCC---CEEE
Q 036605 81 FAKKGRSLHVVGTN----------------GMASEMKSEMGEVIREFKASEKP------I---SSSAFL-CEE---KIFA 131 (340)
Q Consensus 81 ~~~~~~~l~s~~~d----------------g~i~~wd~~~~~~~~~~~~~~~~------i---~~l~~~-~~~---~~l~ 131 (340)
+.++...++.+..+ +.|..+|..+|+.+..+...... . .-+... .+| ..++
T Consensus 248 ~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~ 327 (599)
T 1w6s_A 248 YDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLT 327 (599)
T ss_dssp EETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEE
T ss_pred EeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEE
Confidence 66777788887665 37999999999998877643221 1 112222 467 3455
Q ss_pred EecC--cEEEEECCCCceeEEee
Q 036605 132 LASS--EVRILSLENGEEVLKFS 152 (340)
Q Consensus 132 ~~~~--~i~i~d~~~~~~~~~~~ 152 (340)
.++. .++++|..+|+.+..+.
T Consensus 328 ~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 328 HPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EECTTSEEEEEETTTCCEEEEEE
T ss_pred EECCCcEEEEEECCCCCEeeccc
Confidence 4444 49999999998876553
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=0.001 Score=62.91 Aligned_cols=215 Identities=7% Similarity=-0.055 Sum_probs=127.3
Q ss_pred CCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCC----eeEEEecCCCCCCeEEEEEecCCCEEEEEe-CCC
Q 036605 22 VSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTG----EMKWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNG 95 (340)
Q Consensus 22 ~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~----~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg 95 (340)
..+..|+|.+.. + ++++-...+.|+.+++... .....+.. .......|++.+.++.||.+. ..+
T Consensus 424 ~~~~gl~~d~~~~~---------lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~-~l~~P~GLAvD~~~~~LY~tD~~~~ 493 (791)
T 3m0c_C 424 RNVVALDTEVASNR---------IYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLG 493 (791)
T ss_dssp SSEEEEEEETTTTE---------EEEEETTTTEEEEEEC--------CEEEECS-SCSCCCEEEEETTTTEEEEEETTTT
T ss_pred CceEEEeecccCCe---------eEEeeccceeEEEEeccCCCCCcceeEEEec-CCCCcceeeeeecCCcEEEEecCCC
Confidence 456678888754 5 5566666788888887652 22223332 344667899998887777665 458
Q ss_pred cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEE
Q 036605 96 MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIII 171 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 171 (340)
.|.+.++........+...-.....|++.|.+..|+.++ ..|...++........+.........|++++.+..|+
T Consensus 494 ~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 494 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEE
Confidence 999999886554444444445678999999866665543 3488888865543333333346788999998888888
Q ss_pred EEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCC-----CCC
Q 036605 172 TAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEK-----TNP 246 (340)
Q Consensus 172 s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~-----~~p 246 (340)
.+....+.|..++++ .. ....+.......+..+.+ .. ..+.++++-...+.|...+..+++.... ..|
T Consensus 574 waD~~~~~I~~~d~d--G~-~~~~v~~~~~~l~~P~gl--av--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P 646 (791)
T 3m0c_C 574 WVDSKLHSISSIDVN--GG-NRKTILEDEKRLAHPFSL--AV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 646 (791)
T ss_dssp EEETTTTEEEEEETT--SC-SCEEEEECTTTTSSEEEE--EE--ETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCC
T ss_pred EEeCCCCcEEEEecC--CC-ceEEEecCCCccCCCCEE--EE--eCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCc
Confidence 877767788888873 22 111111100111122222 11 1223444445567788888666544332 235
Q ss_pred ceEEEee
Q 036605 247 AKITVKL 253 (340)
Q Consensus 247 ~~i~~~~ 253 (340)
..|.+..
T Consensus 647 ~~i~v~h 653 (791)
T 3m0c_C 647 EDMVLFH 653 (791)
T ss_dssp CCEEEES
T ss_pred eeEeeec
Confidence 5555543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00023 Score=59.93 Aligned_cols=198 Identities=9% Similarity=-0.025 Sum_probs=120.8
Q ss_pred CeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCee-EEEecCCCCCCeEEEEEecCCCEEEEEe-CCCcEEE
Q 036605 23 SYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEM-KWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNGMASE 99 (340)
Q Consensus 23 ~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~~ 99 (340)
....++|.+.+ + ++.+-...+.|..++...+.. ...+.. .-.....+++.+.+..|+.+. ..+.|.+
T Consensus 36 ~~~~ld~d~~~~~---------lyw~D~~~~~I~r~~~~g~~~~~~~~~~-~l~~p~glavd~~~g~ly~~d~~~~~I~~ 105 (318)
T 3sov_A 36 DAAAVDFVFSHGL---------IYWSDVSEEAIKRTEFNKTESVQNVVVS-GLLSPDGLACDWLGEKLYWTDSETNRIEV 105 (318)
T ss_dssp EEEEEEEEGGGTE---------EEEEETTTTEEEEEETTSSSCCCEEEEE-CCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred ccEEEEEEeCCCE---------EEEEECCCCcEEEEEccCCCceEEEEcC-CCCCccEEEEEcCCCeEEEEECCCCEEEE
Confidence 45688998865 5 666667788999999876632 112222 223567899987666666554 5578999
Q ss_pred EeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 100 MKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 100 wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
+++........+.........+++.|.+..++.++ ..|..+++........+...-.....+++++++..|+.+..
T Consensus 106 ~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~ 185 (318)
T 3sov_A 106 SNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA 185 (318)
T ss_dssp EETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC
Confidence 99875443333333445678999999766665543 23888887643222222223356689999998888888777
Q ss_pred CCCeEEEEEccCCCCCccCCcee-eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 176 GEKHLQVWRCDISSKTVNKGPAL-SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
..+.|..++++ ... ...+.. .+.+ +.-+.+ . .+..+.+-...+.|..++..+++.
T Consensus 186 ~~~~I~~~d~d--G~~-~~~~~~~~~~~-P~glav-----~-~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 186 KLNFIHKSNLD--GTN-RQAVVKGSLPH-PFALTL-----F-EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp TTTEEEEEETT--SCS-CEEEECSCCSC-EEEEEE-----E-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCEEEEEcCC--CCc-eEEEecCCCCC-ceEEEE-----e-CCEEEEEecCCCeEEEEECCCCCc
Confidence 67899999984 211 111110 1111 222222 2 234455556678899998876554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00058 Score=58.30 Aligned_cols=183 Identities=11% Similarity=0.038 Sum_probs=110.5
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCeeEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNGMASEMKSEMGEVIREFKASEKPISSSA 122 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~ 122 (340)
+|+.+. ...|+..++........+. ....+..++|++.+..|+.+. ..+.|..+++..+.....+.........++
T Consensus 46 ~ll~~~-~~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 122 (349)
T 3v64_C 46 VLLFAN-RIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 122 (349)
T ss_dssp EEEEEC-BSCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred eeEeec-ccceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEE
Confidence 344443 4568888887665444444 334688999998777777665 458899999887654333333334567899
Q ss_pred EccCCCEEEEec---CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCC-CeEEEEEccCCCCCccCCcee
Q 036605 123 FLCEEKIFALAS---SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGE-KHLQVWRCDISSKTVNKGPAL 198 (340)
Q Consensus 123 ~~~~~~~l~~~~---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d-~~i~iwd~~~~~~~~~~~~~~ 198 (340)
+.+.+..|+.++ +.|.+.++........+.........++++|.+.+|+.+.... +.|..++++ ... ...+..
T Consensus 123 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~-~~~~~~ 199 (349)
T 3v64_C 123 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSG-RRIIAD 199 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCS-CEESCC
T ss_pred EecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCC-cEEEEE
Confidence 998666665533 3499999875533333333345678999999777777766645 778888873 211 111110
Q ss_pred eecCCCeeeeeecCCCCCCC-CEEEEEeCCCcEEEEECCC
Q 036605 199 SMRHSPVAIDCKNSPNGEDG-TVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~-~~l~~~s~dg~i~vwd~~~ 237 (340)
.-...+.-+.+ ++++ ...++-+..+.|..+++..
T Consensus 200 ~~~~~PnGla~-----d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 200 THLFWPNGLTI-----DYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp SSCSCEEEEEE-----ETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCCcceEEE-----eCCCCEEEEEECCCCEEEEEeCCC
Confidence 00111222333 4444 4445555567899898764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00022 Score=60.09 Aligned_cols=195 Identities=8% Similarity=-0.024 Sum_probs=109.2
Q ss_pred CeEEEEeec-cccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC----CCCCCeEEEEEec-CCCEEEEEeC---
Q 036605 23 SYSCLACGF-VGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG----RHPGGLAGLAFAK-KGRSLHVVGT--- 93 (340)
Q Consensus 23 ~v~~l~~sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----~h~~~v~~v~~~~-~~~~l~s~~~--- 93 (340)
....+++.+ +++ |+++...+.|..+|..++... .+.. ........+++.+ +|+..++-..
T Consensus 81 ~p~gi~~~~~~g~----------l~v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~ 149 (322)
T 2fp8_A 81 RTYDISYNLQNNQ----------LYIVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 149 (322)
T ss_dssp CEEEEEEETTTTE----------EEEEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSC
T ss_pred CCceEEEcCCCCc----------EEEEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccc
Confidence 467889987 666 455544455888887765422 2211 0123578899999 8876655322
Q ss_pred --------------CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec---CcEEEEECCCCc--eeEEeecC
Q 036605 94 --------------NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS---SEVRILSLENGE--EVLKFSDD 154 (340)
Q Consensus 94 --------------dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~~~~--~~~~~~~~ 154 (340)
++.|..||..+++....... ......|+++|+++.|+.++ +.|..|++.... ....+...
T Consensus 150 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~ 228 (322)
T 2fp8_A 150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI 228 (322)
T ss_dssp CTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC
T ss_pred cccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC
Confidence 36799999887765433222 23457899999998765542 449999987531 12222222
Q ss_pred CCCeEEEEECCCCCEEEEEEcC---------CCeEEEEEccCCCCCccCCceeeecC-CCeeeeeecCCCCCCCCEEEEE
Q 036605 155 VGPLQYVSASDGAKIIITAGYG---------EKHLQVWRCDISSKTVNKGPALSMRH-SPVAIDCKNSPNGEDGTVILAV 224 (340)
Q Consensus 155 ~~~v~~~~~s~~~~~l~s~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 224 (340)
.+ ...++++++|.+.++.... .+.|..+|. .++....+...-+. ......+ .+ .++..+++.
T Consensus 229 ~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~---~G~~~~~~~~~~g~~~~~~~~~--~~--~~g~L~v~~ 300 (322)
T 2fp8_A 229 PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE---FGNILEVIPLPPPFAGEHFEQI--QE--HDGLLYIGT 300 (322)
T ss_dssp SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT---TSCEEEEEECCTTTTTSCCCEE--EE--ETTEEEEEC
T ss_pred CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC---CCCEEEEEECCCCCccccceEE--EE--eCCEEEEee
Confidence 33 7889999999866553320 245666663 33332222211000 0111111 11 345555555
Q ss_pred eCCCcEEEEECCC
Q 036605 225 AESGVAYSWDLKT 237 (340)
Q Consensus 225 s~dg~i~vwd~~~ 237 (340)
...+.|..+++..
T Consensus 301 ~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 301 LFHGSVGILVYDK 313 (322)
T ss_dssp SSCSEEEEEEC--
T ss_pred cCCCceEEEeccc
Confidence 5667788887653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-05 Score=74.23 Aligned_cols=185 Identities=14% Similarity=0.180 Sum_probs=116.5
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCC----------e-EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGG----------L-AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK 112 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~----------v-~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 112 (340)
.+++++.++.|+.+|..+|+.++++.. .... + ..+++ .+..++.++.|+.|..+|..+|+.+..+.
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDP-EVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECC-CCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECC-CCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 577788899999999999999999864 2110 1 12233 25678888999999999999999988876
Q ss_pred cCC----CCeeE-EEEccCCCEEEEe-------cCcEEEEECCCCceeEEeecCC---C---------------------
Q 036605 113 ASE----KPISS-SAFLCEEKIFALA-------SSEVRILSLENGEEVLKFSDDV---G--------------------- 156 (340)
Q Consensus 113 ~~~----~~i~~-l~~~~~~~~l~~~-------~~~i~i~d~~~~~~~~~~~~~~---~--------------------- 156 (340)
... ..+.+ ..+ .++..++.. ++.|+.+|..+|+.+-.+.... .
T Consensus 145 ~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 145 TTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp CSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred cCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 431 11111 111 144444332 2459999999999887664211 0
Q ss_pred -------CeEEEEECCCCCEEEEEEcCCC-------------------eEEEEEccCCCCCccCCceeeecCC-------
Q 036605 157 -------PLQYVSASDGAKIIITAGYGEK-------------------HLQVWRCDISSKTVNKGPALSMRHS------- 203 (340)
Q Consensus 157 -------~v~~~~~s~~~~~l~s~~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~------- 203 (340)
....++++++...++.+.. ++ .|..+|. .+++..-..... .+.
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~-~g~~w~~~~~~~~~gd~l~~~~v~AlD~--~tG~~~W~~~~~-~~~~wd~~~~ 299 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTG-NGSPWNREVRSPGGGDNLYLSSILAIRP--DTGKLAWHYQVT-PGDSWDFTAT 299 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECC-CEESSCHHHHSTTCCCCTTTTEEEEECT--TTCCEEEEEESS-TTCCSCCCCC
T ss_pred eeCCCCccccceEEcCCCCEEEEeCC-CCCccccCCCCCCCCCceeeeeEEEEcC--CCCceeeEeecC-CCccccccCC
Confidence 1124678887777777554 44 3777776 455433222210 111
Q ss_pred --CeeeeeecCCCCCCCC---EEEEEeCCCcEEEEECCCCCcc
Q 036605 204 --PVAIDCKNSPNGEDGT---VILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 204 --~~~~~~~~~~~~~~~~---~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
+...++ ..+|. .++.++.+|.++++|..+++.+
T Consensus 300 ~~~~~~d~-----~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 300 QQITLAEL-----NIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp SCEEEEEE-----EETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCcEEEEe-----ccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 111222 12443 6888999999999999998876
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00028 Score=62.15 Aligned_cols=150 Identities=11% Similarity=0.007 Sum_probs=94.5
Q ss_pred CeEEEEeecc---ccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCC----
Q 036605 23 SYSCLACGFV---GKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG---- 95 (340)
Q Consensus 23 ~v~~l~~sp~---~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg---- 95 (340)
....++|+|+ +. |+++...+.|+.+|..++.... +.. ......+++|+++|+ |+.+...+
T Consensus 140 ~P~gvavd~~s~~g~----------Lyv~D~~~~I~~id~~~g~v~~-~~~-~~~~P~giavd~dG~-lyVad~~~~~~~ 206 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDD----------LYWVGQRDAFRHVDFVNQYVDI-KTT-NIGQCADVNFTLNGD-MVVVDDQSSDTN 206 (433)
T ss_dssp CCCEEEECTTTTTCE----------EEEECBTSCEEEEETTTTEEEE-ECC-CCSCEEEEEECTTCC-EEEEECCSCTTS
T ss_pred CCceEEEccccCCCE----------EEEEeCCCCEEEEECCCCEEEE-eec-CCCCccEEEECCCCC-EEEEcCCCCccc
Confidence 4568999985 45 5555444899999998887554 433 445689999999999 66555422
Q ss_pred -cEEEEeCCCCeE-EEEeecCCCCeeEEEEcc-CCCEEEEe--cCcEEEEECCCCceeEEe-ec-CCCCeEEEEECCCCC
Q 036605 96 -MASEMKSEMGEV-IREFKASEKPISSSAFLC-EEKIFALA--SSEVRILSLENGEEVLKF-SD-DVGPLQYVSASDGAK 168 (340)
Q Consensus 96 -~i~~wd~~~~~~-~~~~~~~~~~i~~l~~~~-~~~~l~~~--~~~i~i~d~~~~~~~~~~-~~-~~~~v~~~~~s~~~~ 168 (340)
.+...+...+.. ...+. .......++++| ++.++++. .+.|+.+|..++.....+ .. .......++|+|++.
T Consensus 207 ~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 207 TGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD 285 (433)
T ss_dssp EEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred ceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence 233333322211 01121 223457788999 66655552 334999998877652222 21 122334699999999
Q ss_pred EEEEEEcCCCeEEEEEcc
Q 036605 169 IIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 169 ~l~s~~~~d~~i~iwd~~ 186 (340)
+|+.+....+.|..++++
T Consensus 286 ~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEEEETTTTEEEEEEBC
T ss_pred EEEEEeCCCCEEEEEeCC
Confidence 777777767899998874
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00096 Score=56.07 Aligned_cols=183 Identities=7% Similarity=-0.046 Sum_probs=107.3
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCCC---CeEEEE-eecCCCCe
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT-NGMASEMKSEM---GEVIRE-FKASEKPI 118 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~~wd~~~---~~~~~~-~~~~~~~i 118 (340)
+|+.+. ...|+..|+.+.+....+. ......+++|++.+..|+.+.. .+.|..+++.. +..... +...-...
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 444444 3569999998876555444 3456889999997777776654 58999999875 122222 32223456
Q ss_pred eEEEEccCCCEEEEe---cCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCC-CeEEEEEccCCCCCccC
Q 036605 119 SSSAFLCEEKIFALA---SSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGE-KHLQVWRCDISSKTVNK 194 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~---~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d-~~i~iwd~~~~~~~~~~ 194 (340)
..+++.+.+..|+.+ .+.|.++++........+.........++++|.+.+|+.+.... +.|..++++ +....
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d---G~~~~ 156 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---GVDIY 156 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT---SCCEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC---CCCeE
Confidence 889999766655543 23499999875433322333345678999999777777666533 678777763 22111
Q ss_pred CceeeecCCCeeeeeecCCCCCCCCEE-EEEeCCCcEEEEECCC
Q 036605 195 GPALSMRHSPVAIDCKNSPNGEDGTVI-LAVAESGVAYSWDLKT 237 (340)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~s~dg~i~vwd~~~ 237 (340)
.+....-..+.-+.+ ++++..| ++-+..+.|..+|+..
T Consensus 157 ~~~~~~~~~P~gla~-----d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 157 SLVTENIQWPNGITL-----DLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp EEECSSCSCEEEEEE-----ETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEECCCCCceEEEE-----eccCCEEEEEECCCCeEEEEecCC
Confidence 111000111222233 4444444 4445567899999864
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00016 Score=68.55 Aligned_cols=151 Identities=9% Similarity=0.007 Sum_probs=86.9
Q ss_pred EEEEeeccccccccccCceEEEEEcCC-----CcEEEEEccCCee--EEEecCCCCCCeEEEEEecCCCEEEEEeC---C
Q 036605 25 SCLACGFVGKKRRKERGTLLLALGTSN-----GDILAVDVLTGEM--KWKSTGRHPGGLAGLAFAKKGRSLHVVGT---N 94 (340)
Q Consensus 25 ~~l~~sp~~~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d 94 (340)
..++|+||++ .|+....+ ..|+++++.++.. ...+..........+.|+|||++|+..+. .
T Consensus 224 ~~~~WspDg~---------~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 294 (751)
T 2xe4_A 224 GEIVWGPDHT---------SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPET 294 (751)
T ss_dssp SCCEECSSTT---------EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSC
T ss_pred eeEEEecCCC---------EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCC
Confidence 4688999997 56665554 3688888877641 22333223345678899999998877653 3
Q ss_pred CcEEEEeCCCC--eE--EEEeecCCCCeeEEEEccCCCEEEEecC------cEEEEECCCCceeEE-eecCCCC--eEEE
Q 036605 95 GMASEMKSEMG--EV--IREFKASEKPISSSAFLCEEKIFALASS------EVRILSLENGEEVLK-FSDDVGP--LQYV 161 (340)
Q Consensus 95 g~i~~wd~~~~--~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~------~i~i~d~~~~~~~~~-~~~~~~~--v~~~ 161 (340)
..|.++|+.++ .. ............++.|+..+.+++..+. .|..+|+.++..... +..+... +..+
T Consensus 295 ~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~ 374 (751)
T 2xe4_A 295 AEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESI 374 (751)
T ss_dssp EEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEE
T ss_pred ceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEE
Confidence 46888898875 22 2222333344555555444444444322 277788765322233 3334433 3444
Q ss_pred EECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 162 SASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 162 ~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
.+ .+.+|+.....++..++|-++
T Consensus 375 ~~--~~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 375 AV--RSNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp EE--CSSEEEEEEEETTEEEEEEEE
T ss_pred EE--ECCEEEEEEEeCCEEEEEEEe
Confidence 44 455666555557776666553
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00044 Score=59.96 Aligned_cols=183 Identities=11% Similarity=0.024 Sum_probs=110.1
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCeeEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNGMASEMKSEMGEVIREFKASEKPISSSA 122 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~ 122 (340)
+|+.+ ....|+.+++..+.....+. ....+..++|++.+..|+.+. ..+.|..+++..+.....+.........++
T Consensus 89 ~l~~~-~~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 165 (386)
T 3v65_B 89 VLLFA-NRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 165 (386)
T ss_dssp EEEEE-CBSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred eeEee-cCccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE
Confidence 44444 34578888887766544444 334688999998777777665 458899999887654444433334567899
Q ss_pred EccCCCEEEEec---CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCC-CeEEEEEccCCCCCccCCcee
Q 036605 123 FLCEEKIFALAS---SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGE-KHLQVWRCDISSKTVNKGPAL 198 (340)
Q Consensus 123 ~~~~~~~l~~~~---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d-~~i~iwd~~~~~~~~~~~~~~ 198 (340)
+.+.+..|+.++ +.|.++++........+.........++++|.+.+|+.+.... +.|..++++ . .....+..
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G-~~~~~~~~ 242 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--G-SGRRIIAD 242 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--S-CSCEEEEC
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--C-CCcEEEEE
Confidence 998766665533 3388888765433333333345678999999877777766645 677777763 2 11111110
Q ss_pred eecCCCeeeeeecCCCCCC-CCEEEEEeCCCcEEEEECCC
Q 036605 199 SMRHSPVAIDCKNSPNGED-GTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~-~~~l~~~s~dg~i~vwd~~~ 237 (340)
.....+.-+.+ +++ +..+++-+..+.|..+++..
T Consensus 243 ~~~~~PnGlav-----d~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 243 THLFWPNGLTI-----DYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp SSCSCEEEEEE-----EGGGTEEEEEETTTTEEEEECTTS
T ss_pred CCCCCeeeEEE-----eCCCCEEEEEECCCCEEEEEeCCC
Confidence 00111222223 443 34444555567788888764
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=75.25 Aligned_cols=203 Identities=9% Similarity=-0.032 Sum_probs=113.3
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC----CeeEEEecCCCCCCeEEEEEecCCCEEEEE-eCCCcE
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT----GEMKWKSTGRHPGGLAGLAFAKKGRSLHVV-GTNGMA 97 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~dg~i 97 (340)
.+..|+|.+.+. .++++-...+.|+.+++.. ......+.. .......|++.+.+..||.+ ...+.|
T Consensus 407 ~p~gla~d~~~~--------~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-~~~~P~glavD~~~g~LY~tD~~~~~I 477 (699)
T 1n7d_A 407 NVVALDTEVASN--------RIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLGTV 477 (699)
T ss_dssp TCCCCEEETTTT--------EEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-CC--CCCEECCCSSSBCEECCTTTSCE
T ss_pred ceEEEccccccC--------eEEEEecCCCeEEEEecCCCCCCcceEEEEeC-CCCCcceEEEEeeCCcEEEEeccCCeE
Confidence 456788888664 0444445668899999875 222212211 12235678887655555554 346889
Q ss_pred EEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEE
Q 036605 98 SEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 173 (340)
.++++........+.........|++.|.+.+|+.++ +.|..+++........+.........|+|++++..|+.+
T Consensus 478 ~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 478 SVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp EEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEE
T ss_pred EEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEE
Confidence 9999876554443433334567899999766655533 347777765432211122223456789999987777776
Q ss_pred EcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 036605 174 GYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
....+.|.+++++......+......+.+ +..+.+ ..+ .++++....+.|..++..+++.+
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~-P~glav-----d~~-~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAH-PFSLAV-----FED-KVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSS-CCCCEE-----ETT-EEEEECSTTTCEEEEETTTEEEE
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCC-ceEeEE-----ECC-EEEEEeCCCCeEEEEEccCCCce
Confidence 76678899998742111111000000111 112222 122 34444456678999987665443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=8.1e-05 Score=68.22 Aligned_cols=191 Identities=13% Similarity=0.191 Sum_probs=115.7
Q ss_pred EEEEEcC-CCcEEEEEc-cCCeeEEEecCCCCC----------CeEEEEEecCCCE----EEEEeCCCcEEEEeCCCCeE
Q 036605 44 LLALGTS-NGDILAVDV-LTGEMKWKSTGRHPG----------GLAGLAFAKKGRS----LHVVGTNGMASEMKSEMGEV 107 (340)
Q Consensus 44 ~l~~g~~-dg~i~i~d~-~~~~~~~~~~~~h~~----------~v~~v~~~~~~~~----l~s~~~dg~i~~wd~~~~~~ 107 (340)
.|++++. ++.|+.+|. .+|+.++++...... ....+++.|.+.. |+.++.|+.|..+|..+|+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4677777 899999999 999999988651110 0123555444444 88889999999999999999
Q ss_pred EEEeecCCC----Cee-EEEEccCCCEEEEe-------cCcEEEEECCCCceeEEeecCCCC------------------
Q 036605 108 IREFKASEK----PIS-SSAFLCEEKIFALA-------SSEVRILSLENGEEVLKFSDDVGP------------------ 157 (340)
Q Consensus 108 ~~~~~~~~~----~i~-~l~~~~~~~~l~~~-------~~~i~i~d~~~~~~~~~~~~~~~~------------------ 157 (340)
+........ .+. ...+ .++..++.. ++.|+.+|..+|+.+-++......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~ 222 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQ 222 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccc
Confidence 877653220 121 1122 245444333 345999999999888666432110
Q ss_pred -------------------e-EEEEECCCCCEEEEEEcCC----------------CeEEEEEccCCCCCccCCceee--
Q 036605 158 -------------------L-QYVSASDGAKIIITAGYGE----------------KHLQVWRCDISSKTVNKGPALS-- 199 (340)
Q Consensus 158 -------------------v-~~~~~s~~~~~l~s~~~~d----------------~~i~iwd~~~~~~~~~~~~~~~-- 199 (340)
+ ..+++.++...++.+.. + +.|..+|. .+++..-.....
T Consensus 223 ~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g-~~~p~~~~~r~gd~~y~~sv~Ald~--~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 223 KGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG-NPAPWNETMRPGDNKWTMTIFGRDA--DTGEAKFGYQKTPH 299 (599)
T ss_dssp TTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC-CCSCSCGGGSCSCCTTSSEEEEEET--TTCCEEEEEESSTT
T ss_pred cccccccCCCcceecCCCccccceeEeCCCCEEEEeCC-CCccccCcccCCCccccceEEEEeC--CCCceeeEeecCCC
Confidence 0 13455566666666444 3 36777776 455443221110
Q ss_pred ------ecCCCeeeeeecCCCCCCC---CEEEEEeCCCcEEEEECCCCCccC
Q 036605 200 ------MRHSPVAIDCKNSPNGEDG---TVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 200 ------~~~~~~~~~~~~~~~~~~~---~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
....+...+. . ..+| ..++.++.+|.++++|..+++.+.
T Consensus 300 d~wd~d~~~~p~l~d~--~--~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 300 DEWDYAGVNVMMLSEQ--K--DKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp CSSCCCCCCCCEEEEE--E--CTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccCCCccEEEec--c--ccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 0011222222 0 1356 567778999999999999987654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00043 Score=61.43 Aligned_cols=154 Identities=14% Similarity=0.037 Sum_probs=97.0
Q ss_pred CeEEEEeec-cc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCC--CCCCeEEEEE-------ecCCCEEEEE
Q 036605 23 SYSCLACGF-VG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGR--HPGGLAGLAF-------AKKGRSLHVV 91 (340)
Q Consensus 23 ~v~~l~~sp-~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--h~~~v~~v~~-------~~~~~~l~s~ 91 (340)
....|+|.| ++ + ++++-...+.|++.|++++.....+... .......++| ++++..|+.+
T Consensus 140 ~p~~la~dp~~~~~---------Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyva 210 (496)
T 3kya_A 140 DNGRLAFDPLNKDH---------LYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVA 210 (496)
T ss_dssp SEEEEEEETTEEEE---------EEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEE
T ss_pred CCCEEEEccCCCCE---------EEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEE
Confidence 356899998 34 4 4444444577999999888755444331 1235899999 9999978777
Q ss_pred eCCC-------cEEEEeCCC-CeEE-----EEeecCCCCeeEEEEccCCCEEEE---ecCcEEEEECC-------CCce-
Q 036605 92 GTNG-------MASEMKSEM-GEVI-----REFKASEKPISSSAFLCEEKIFAL---ASSEVRILSLE-------NGEE- 147 (340)
Q Consensus 92 ~~dg-------~i~~wd~~~-~~~~-----~~~~~~~~~i~~l~~~~~~~~l~~---~~~~i~i~d~~-------~~~~- 147 (340)
...+ .|.+++... +... ..+... .....++++|++..|+. ..+.|..+|+. ++..
T Consensus 211 d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~ 289 (496)
T 3kya_A 211 IDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW 289 (496)
T ss_dssp ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCC
T ss_pred eCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceee
Confidence 6654 266665433 2211 122211 23467889996555544 33349999987 5543
Q ss_pred ----------eEE-ee-cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 148 ----------VLK-FS-DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 148 ----------~~~-~~-~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
... +. ........++|+|+|.+|+.+......|+.++.+
T Consensus 290 tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 112 21 2234567999999999777766667888887764
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00065 Score=57.15 Aligned_cols=174 Identities=16% Similarity=0.216 Sum_probs=109.2
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEE-EEcC--CCcEEEEEc--cCCeeEEEecCC----
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLA-LGTS--NGDILAVDV--LTGEMKWKSTGR---- 71 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~-~g~~--dg~i~i~d~--~~~~~~~~~~~~---- 71 (340)
|||+ +|++++.+. . ..+..+..-|+-+- ......+++ +--. +++|.+|++ .++. +..+...
T Consensus 54 Vydl-~G~~l~~~~----~--g~~nnVD~r~~~~l--~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv 123 (355)
T 3amr_A 54 VYSL-DGKMLHSYN----T--GKLNNVDIRYDFPL--NGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPI 123 (355)
T ss_dssp EEET-TSCEEEEEC----C--SCEEEEEEEEEEEE--TTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCE
T ss_pred EEcC-CCcEEEEcc----C--CCcccEEEeccccc--CCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCc
Confidence 4677 777777664 1 45666666553100 000011223 3333 578999976 4443 4444220
Q ss_pred --CCCCeEEEEE--ecC-CC-EEEEEeCCCcEEEEeC-------CCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--
Q 036605 72 --HPGGLAGLAF--AKK-GR-SLHVVGTNGMASEMKS-------EMGEVIREFKASEKPISSSAFLCEEKIFALASSE-- 136 (340)
Q Consensus 72 --h~~~v~~v~~--~~~-~~-~l~s~~~dg~i~~wd~-------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~-- 136 (340)
-...+..+|+ +|. +. +++....+|.+..|++ .+.+.+++|... ..+..+.+.+....|+.+..+
T Consensus 124 ~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~G 202 (355)
T 3amr_A 124 ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEA 202 (355)
T ss_dssp ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTE
T ss_pred CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEecccce
Confidence 1156777888 664 43 6888888999999988 234566777654 467888889888888887766
Q ss_pred EEEEECC-----CCceeEEee-cC-CCCeEEEEE--CCCCC-EEEEEEcCCCeEEEEEc
Q 036605 137 VRILSLE-----NGEEVLKFS-DD-VGPLQYVSA--SDGAK-IIITAGYGEKHLQVWRC 185 (340)
Q Consensus 137 i~i~d~~-----~~~~~~~~~-~~-~~~v~~~~~--s~~~~-~l~s~~~~d~~i~iwd~ 185 (340)
|+.|+.+ +++.+..+. ++ ...+..|++ .++++ ||++++.+++.+.+||.
T Consensus 203 Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 203 IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 6666654 344444442 22 247888888 55666 88888887899999997
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0008 Score=61.60 Aligned_cols=108 Identities=22% Similarity=0.233 Sum_probs=70.1
Q ss_pred EEEEEcC------CCcEEEEEccCCeeEEEecCCCCCCe-----------------------------------------
Q 036605 44 LLALGTS------NGDILAVDVLTGEMKWKSTGRHPGGL----------------------------------------- 76 (340)
Q Consensus 44 ~l~~g~~------dg~i~i~d~~~~~~~~~~~~~h~~~v----------------------------------------- 76 (340)
.+++++. +|.|+.+|..+|+.++.... ....+
T Consensus 170 ~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~-~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w 248 (582)
T 1flg_A 170 LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPF-VEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPW 248 (582)
T ss_dssp EEEECCBCGGGCCBCEEEEECTTTCCEEEEEES-STTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCC
T ss_pred EEEEeccccccCCCCEEEEEECCCCCEEeecCC-CccccccccCcccccccccccccCCCccccccccccccccCCcccc
Confidence 4556553 78999999999998887643 11000
Q ss_pred EEEEEecCCCEEEEEeC--------------------C----CcEEEEeCCCCeEEEEeecCCC------CeeE-EEEc-
Q 036605 77 AGLAFAKKGRSLHVVGT--------------------N----GMASEMKSEMGEVIREFKASEK------PISS-SAFL- 124 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~--------------------d----g~i~~wd~~~~~~~~~~~~~~~------~i~~-l~~~- 124 (340)
..++++|+...++.+.. | +.|..+|..+|+.+..++.... .+.. +.+.
T Consensus 249 ~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~ 328 (582)
T 1flg_A 249 QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDY 328 (582)
T ss_dssp SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEE
T ss_pred CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEee
Confidence 23566777778887663 2 5899999999999888753211 1111 1122
Q ss_pred --cCCC---EEEEecC--cEEEEECCCCceeEEee
Q 036605 125 --CEEK---IFALASS--EVRILSLENGEEVLKFS 152 (340)
Q Consensus 125 --~~~~---~l~~~~~--~i~i~d~~~~~~~~~~~ 152 (340)
.+|+ .++.++. .++++|..+|+.+..+.
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence 4664 4555544 49999999998876553
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.16 E-value=5e-05 Score=70.81 Aligned_cols=76 Identities=9% Similarity=-0.015 Sum_probs=51.1
Q ss_pred CCeEEEEeeccccccccccCceEEEEEc-CCCcEEEEEccCCeeEEEecCCCCCCe-EEEEEecCCCEEEEEe-CC----
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGT-SNGDILAVDVLTGEMKWKSTGRHPGGL-AGLAFAKKGRSLHVVG-TN---- 94 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~-~d---- 94 (340)
..+.++++.++++ ++++|+ .+..+.+||..+.+.... ...+...- .+++..++++.++.|+ .+
T Consensus 243 ~~~~~~~~~~~g~---------lyv~GG~~~~~v~~yd~~t~~W~~~-~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~ 312 (656)
T 1k3i_A 243 MFCPGISMDGNGQ---------IVVTGGNDAKKTSLYDSSSDSWIPG-PDMQVARGYQSSATMSDGRVFTIGGSWSGGVF 312 (656)
T ss_dssp CSSCEEEECTTSC---------EEEECSSSTTCEEEEEGGGTEEEEC-CCCSSCCSSCEEEECTTSCEEEECCCCCSSSC
T ss_pred CccccccCCCCCC---------EEEeCCCCCCceEEecCcCCceeEC-CCCCccccccceEEecCCeEEEEeCcccCCcc
Confidence 3444567778888 888887 456899999998764432 22122222 3455667899888888 34
Q ss_pred -CcEEEEeCCCCeE
Q 036605 95 -GMASEMKSEMGEV 107 (340)
Q Consensus 95 -g~i~~wd~~~~~~ 107 (340)
..+.+||+.+..-
T Consensus 313 ~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 313 EKNGEVYSPSSKTW 326 (656)
T ss_dssp CCCEEEEETTTTEE
T ss_pred cccceEeCCCCCcc
Confidence 4689999987763
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0016 Score=62.08 Aligned_cols=151 Identities=13% Similarity=0.079 Sum_probs=106.3
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-------CCCCCeEEEEEecCCCEEEEEeC
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-------RHPGGLAGLAFAKKGRSLHVVGT 93 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~l~s~~~ 93 (340)
...|.++...++|. |-+|+.++-|..|+..++....-... .....|.+++..+++..|..|+.
T Consensus 356 ~~~V~~i~~d~~g~----------lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~ 425 (795)
T 4a2l_A 356 DNVVSCIVEDKDKN----------LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH 425 (795)
T ss_dssp CSSEEEEEECTTSC----------EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET
T ss_pred CCeeEEEEECCCCC----------EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC
Confidence 35688888888888 77788887899999887764432211 12357899999888875777888
Q ss_pred CCcEEEEeCCCCeEEEEee----cCCCCeeEEEEccCCCEEEEecCcEEEEECCCCceeEEeec-------CCCCeEEEE
Q 036605 94 NGMASEMKSEMGEVIREFK----ASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSD-------DVGPLQYVS 162 (340)
Q Consensus 94 dg~i~~wd~~~~~~~~~~~----~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~~-------~~~~v~~~~ 162 (340)
++-|..||..+++...... .....|.++...++|.+.+....-+.+||..+++.. .+.. ....|.++.
T Consensus 426 ~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~ 504 (795)
T 4a2l_A 426 AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLF 504 (795)
T ss_dssp TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEE
T ss_pred cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEE-EccccccccccCCceEEEEE
Confidence 7789999998876543221 124568899999989877766556999998876432 2221 235788999
Q ss_pred ECCCCCEEEEEEcCCCeEEEEEc
Q 036605 163 ASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 163 ~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
..++|...+. .. +-|..|+.
T Consensus 505 ~d~~g~lWig-t~--~Gl~~~~~ 524 (795)
T 4a2l_A 505 RDSHKRLWIG-GE--EGLSVFKQ 524 (795)
T ss_dssp ECTTCCEEEE-ES--SCEEEEEE
T ss_pred ECCCCCEEEE-eC--CceEEEeC
Confidence 9988875554 33 45777886
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00087 Score=55.98 Aligned_cols=151 Identities=10% Similarity=-0.071 Sum_probs=88.9
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCC--CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSN--GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASE 99 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~ 99 (340)
.....+++.++++ ++++.... ..|..++..+++...............++..+++..+++-..++.|.+
T Consensus 72 ~~p~gia~~~dG~---------l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~ 142 (306)
T 2p4o_A 72 GKVSGLAFTSNGD---------LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWL 142 (306)
T ss_dssp SEEEEEEECTTSC---------EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CCceeEEEcCCCc---------EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEE
Confidence 4577899999998 66555433 247778877877543222112233456665554443444335789999
Q ss_pred EeCCCCeE-EEEee---------cCCCCeeEEEEccCCCEEEEec---CcEEEEECCC-Cce--eEEeecCCCCeEEEEE
Q 036605 100 MKSEMGEV-IREFK---------ASEKPISSSAFLCEEKIFALAS---SEVRILSLEN-GEE--VLKFSDDVGPLQYVSA 163 (340)
Q Consensus 100 wd~~~~~~-~~~~~---------~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~~-~~~--~~~~~~~~~~v~~~~~ 163 (340)
+|..++.. +.... ..-.....+ +|++..|+.++ +.|..|++.. ++. ...+.. ......+++
T Consensus 143 ~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~v 219 (306)
T 2p4o_A 143 IDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAF 219 (306)
T ss_dssp EETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEE
T ss_pred EeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEE
Confidence 99876532 21111 011234455 88888776644 3499999864 321 122211 134567899
Q ss_pred CCCCCEEEEEEcCCCeEEEEEc
Q 036605 164 SDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 164 s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
+++|..+++ ....+.|.+++.
T Consensus 220 d~dG~l~va-~~~~~~V~~~~~ 240 (306)
T 2p4o_A 220 DVEGNLYGA-THIYNSVVRIAP 240 (306)
T ss_dssp BTTCCEEEE-CBTTCCEEEECT
T ss_pred CCCCCEEEE-eCCCCeEEEECC
Confidence 999976555 444788999885
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0033 Score=54.70 Aligned_cols=183 Identities=7% Similarity=-0.041 Sum_probs=109.5
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCC----eEEEEeecCCCCe
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNGMASEMKSEMG----EVIREFKASEKPI 118 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~~wd~~~~----~~~~~~~~~~~~i 118 (340)
+|+.+ ....|+..++........+. ....+..++|++.+..|+.+. ..+.|..+++... .....+.......
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEe-ccceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 44444 34689999988776544443 456789999999777777765 4578999988652 2222333344567
Q ss_pred eEEEEccCCCEEEEec---CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC-CCeEEEEEccCCCCCccC
Q 036605 119 SSSAFLCEEKIFALAS---SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG-EKHLQVWRCDISSKTVNK 194 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~~---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~-d~~i~iwd~~~~~~~~~~ 194 (340)
..+++.+.+..|+.++ +.|.+.++........+.........++++|.+.+|+.+... .+.|...+++ . ....
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--G-~~~~ 238 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--G-VDIY 238 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT--S-CSCE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC--C-CccE
Confidence 8899998666665543 339999987664443444344567899999977777775543 3677777763 2 2111
Q ss_pred CceeeecCCCeeeeeecCCCCCCCCEEEE-EeCCCcEEEEECCC
Q 036605 195 GPALSMRHSPVAIDCKNSPNGEDGTVILA-VAESGVAYSWDLKT 237 (340)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~s~dg~i~vwd~~~ 237 (340)
.+....-..+.-+.+ ++++..|+. -+..+.|..+|+..
T Consensus 239 ~~~~~~l~~P~glav-----d~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 239 SLVTENIQWPNGITL-----DLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp EEECSSCSCEEEEEE-----ETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEECCCCceEEEEE-----EeCCCEEEEEECCCCEEEEEeCCC
Confidence 111000012222333 444444544 45567788888764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0043 Score=57.22 Aligned_cols=202 Identities=10% Similarity=-0.046 Sum_probs=117.9
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee-EEEecCCCCCCeEEEEEecCCCEEEEEe-CCCcEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM-KWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNGMASE 99 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~~ 99 (340)
.....++|++.+. .++.+-...+.|..+++..... ...+.. .......+++++.+..|+.+. ..+.|.+
T Consensus 40 ~~~~~ld~~~~~~--------~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-~~~~P~GlAvD~~~~~ly~~d~~~~~I~v 110 (619)
T 3s94_A 40 EDAAAVDFVFSHG--------LIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLLSPDGLACDWLGEKLYWTDSETNRIEV 110 (619)
T ss_dssp SCEEEEEEETTTT--------EEEEEETTTTEEEEEEC-----CEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CceEEEEEEeCCC--------EEEEEECCCCeEEEEEccCCCceEEEEeC-CCCCcCeEEEEecCCEEEEEeCCCCEEEE
Confidence 3567899998664 0444555678888888775532 223332 335789999999777777665 4589999
Q ss_pred EeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 100 MKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 100 wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
.++........+...-.....|++.|.+..|+.++ ..|...++............-.....+++++++..|+.+..
T Consensus 111 ~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~ 190 (619)
T 3s94_A 111 SNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA 190 (619)
T ss_dssp EETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC
Confidence 99875543323323344578999999766555533 23776776543322222233456789999998888888777
Q ss_pred CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 036605 176 GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
..+.|..++++ .........-.+.++ ..+.+ ..+ ..+++-...+.|...|..+++..
T Consensus 191 ~~~~I~~~~~d--G~~~~~~~~~~~~~P-~gi~~-----~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 191 KLNFIHKSNLD--GTNRQAVVKGSLPHP-FALTL-----FED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp TTCCEEEESSS--CCEEC---------C-CCEEE-----SSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred CCCeEEEecCC--CCccEEEEeCCCCCc-eEEEE-----eCC-EEEEecCCCCEEEEEECCCCccc
Confidence 67788888873 221111111112232 22223 233 34444455678999988776543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00056 Score=62.52 Aligned_cols=189 Identities=11% Similarity=0.176 Sum_probs=113.0
Q ss_pred EEEEEcC-CCcEEEEEc-cCCeeEEEecCCCCCC----------eEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 036605 44 LLALGTS-NGDILAVDV-LTGEMKWKSTGRHPGG----------LAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREF 111 (340)
Q Consensus 44 ~l~~g~~-dg~i~i~d~-~~~~~~~~~~~~h~~~----------v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 111 (340)
.+++++. ++.|+.+|. .+|+.++++....... -..++. ++..++.++.|+.|..+|..+|+.+..+
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 141 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEEe
Confidence 4667777 899999999 9999999886411110 012333 3568888889999999999999998776
Q ss_pred ecCCC----Cee-EEEEccCCCEEEEe-------cCcEEEEECCCCceeEEeecCCCC----------------------
Q 036605 112 KASEK----PIS-SSAFLCEEKIFALA-------SSEVRILSLENGEEVLKFSDDVGP---------------------- 157 (340)
Q Consensus 112 ~~~~~----~i~-~l~~~~~~~~l~~~-------~~~i~i~d~~~~~~~~~~~~~~~~---------------------- 157 (340)
..... .+. ...+. ++..++.. ++.|+.+|..+|+.+-++......
T Consensus 142 ~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g 220 (571)
T 2ad6_A 142 EVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp ECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred cCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccc
Confidence 53220 121 11122 45444443 346999999999888666432110
Q ss_pred ----------------eEEEEECCCCCEEEEEEcC-----------C----CeEEEEEccCCCCCccCCceee-------
Q 036605 158 ----------------LQYVSASDGAKIIITAGYG-----------E----KHLQVWRCDISSKTVNKGPALS------- 199 (340)
Q Consensus 158 ----------------v~~~~~s~~~~~l~s~~~~-----------d----~~i~iwd~~~~~~~~~~~~~~~------- 199 (340)
...+++.++...++.+..+ | +.|..+|. .+++..-.....
T Consensus 221 ~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~--~tG~~~W~~~~~~~d~~d~ 298 (571)
T 2ad6_A 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDL--DTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEET--TTCCEEEEEESSTTCSSCC
T ss_pred cccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEec--CCCcEEEEecCCCCccccc
Confidence 0134566655566554321 1 24777776 455432221110
Q ss_pred -ecCCCeeeeeecCCCCCCCC---EEEEEeCCCcEEEEECCCCCccC
Q 036605 200 -MRHSPVAIDCKNSPNGEDGT---VILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 200 -~~~~~~~~~~~~~~~~~~~~---~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
....+...+. ..+|. .++.++.+|.++++|..+++.+.
T Consensus 299 ~~~~~p~l~~~-----~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w 340 (571)
T 2ad6_A 299 AGVNQMVLTDQ-----PVNGKMTPLLSHIDRNGILYTLNRENGNLIV 340 (571)
T ss_dssp CCCCCCEEEEE-----EETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccCCCCEEEec-----ccCCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence 0111222222 23563 56778899999999999987654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0004 Score=63.57 Aligned_cols=161 Identities=15% Similarity=0.164 Sum_probs=96.7
Q ss_pred ccCCCCceeeeeeCCCCCCC--------CCeEEEEee-ccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCC
Q 036605 2 WSTNDGSLLAEWKQPDGEPV--------VSYSCLACG-FVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRH 72 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~--------~~v~~l~~s-p~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h 72 (340)
+|+.+|+.+-.+... +|. .++. +... .+|+.++ +++.++.+|.++++|..+|+.++.+....
T Consensus 296 lD~~TG~~~W~~q~~--~~d~wd~~~~~~p~l-~~~~~~~G~~~~------~v~~~~~~G~l~~lD~~tG~~lw~~~~~~ 366 (582)
T 1flg_A 296 VDPSSGEVKWFYQHT--PNDAWDFSGNNELVL-FDYKAKDGKIVK------ATAHADRNGFFYVVDRSNGKLQNAFPFVD 366 (582)
T ss_dssp ECTTTCCEEEEEESS--TTCCSCCCCCCCCEE-EEEECSSSCEEE------EEEEECTTSEEEEEETTTCCEEEEEESSS
T ss_pred EeCCCCCEEEEEeCC--CCCcccccCCCCcEE-EeeecCCCCEEE------EEEEECCCceEEEEECCCCCEeccccccc
Confidence 467888888766532 232 1221 1221 3453111 78899999999999999999887765311
Q ss_pred C-----------CC---------------------------------eEEEEEecCCCEEEEEe----------------
Q 036605 73 P-----------GG---------------------------------LAGLAFAKKGRSLHVVG---------------- 92 (340)
Q Consensus 73 ~-----------~~---------------------------------v~~v~~~~~~~~l~s~~---------------- 92 (340)
. +. -..++++|+...+++..
T Consensus 367 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 446 (582)
T 1flg_A 367 NITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTK 446 (582)
T ss_dssp CCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCT
T ss_pred CccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccC
Confidence 0 00 01346677666666543
Q ss_pred -----------------CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEeec
Q 036605 93 -----------------TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSD 153 (340)
Q Consensus 93 -----------------~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~ 153 (340)
.+|.|..||+.+|+.+.+..... +...-.+...+..++.++ +.++.||.++|+.+.++..
T Consensus 447 g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 447 GSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp TSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 25789999999999887765432 222211222344555544 4499999999999988865
Q ss_pred CCCCe-EEEEECCCCCEEEE
Q 036605 154 DVGPL-QYVSASDGAKIIIT 172 (340)
Q Consensus 154 ~~~~v-~~~~~s~~~~~l~s 172 (340)
..... .-+.|..+|+..++
T Consensus 526 ~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 526 GSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp SSCCCSCCEEEEETTEEEEE
T ss_pred CCCcccCceEEEECCEEEEE
Confidence 33222 22556567764444
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0027 Score=52.97 Aligned_cols=152 Identities=11% Similarity=0.041 Sum_probs=100.5
Q ss_pred eEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEE-ecC-C--CC--CCeEEEEE---ecCCCEEEEEeC
Q 036605 24 YSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWK-STG-R--HP--GGLAGLAF---AKKGRSLHVVGT 93 (340)
Q Consensus 24 v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~-~--h~--~~v~~v~~---~~~~~~l~s~~~ 93 (340)
-.|.+|.+.. + ++++.-..|+|..|+...+..... +.+ . .. ..+.+|.| .|+++++++...
T Consensus 15 PE~~~wd~~~g~---------~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~ 85 (334)
T 2p9w_A 15 PEDTIYDRTRQV---------FYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN 85 (334)
T ss_dssp CSCEEEETTTTE---------EEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred CcCccCcCCCCE---------EEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence 3478898755 5 555555899999999876643322 221 0 11 13589999 688766665432
Q ss_pred -------------CCcEEEEeCC---CCeEEEEeec-------------CCCCeeEEEEccCCCEEEEe--c-CcEEEEE
Q 036605 94 -------------NGMASEMKSE---MGEVIREFKA-------------SEKPISSSAFLCEEKIFALA--S-SEVRILS 141 (340)
Q Consensus 94 -------------dg~i~~wd~~---~~~~~~~~~~-------------~~~~i~~l~~~~~~~~l~~~--~-~~i~i~d 141 (340)
+..|..+|+. +++.+..... .......+++.++|+..++. . ..|..++
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 5779999999 7876655431 11247899999999988763 3 4466666
Q ss_pred CCCCceeEEe-ec-----CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 142 LENGEEVLKF-SD-----DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 142 ~~~~~~~~~~-~~-----~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
.... .+..+ .. .....+.|++.|+|..|++... .+.|..+|++
T Consensus 166 pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~ 214 (334)
T 2p9w_A 166 ADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS 214 (334)
T ss_dssp TTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred CCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence 5433 33222 11 1123679999999999998777 9999999984
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.012 Score=54.43 Aligned_cols=198 Identities=9% Similarity=-0.052 Sum_probs=124.3
Q ss_pred CCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC-CCcEEE
Q 036605 22 VSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT-NGMASE 99 (340)
Q Consensus 22 ~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~~ 99 (340)
.....++|.+.+ + ++.+-..++.|+.+++........+.. .......+++.+.+..|+.+.. .+.|.+
T Consensus 37 ~~~~~l~~d~~~~~---------lywtD~~~~~I~r~~~~g~~~~~v~~~-g~~~P~GlAvD~~~~~LY~tD~~~~~I~v 106 (628)
T 4a0p_A 37 KEASALDFDVTDNR---------IYWTDISLKTISRAFMNGSALEHVVEF-GLDYPEGMAVDWLGKNLYWADTGTNRIEV 106 (628)
T ss_dssp SCEEEEEEETTTTE---------EEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CceEEEEEECCCCE---------EEEEECCCCeEEEEECCCCCcEEEEeC-CCCCcceEEEEeCCCEEEEEECCCCEEEE
Confidence 456789999866 4 556666789999999876544433433 2345778999887777776654 578999
Q ss_pred EeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 100 MKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 100 wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
.++........+...-.....|++.|....|+..+ ..|...++..... ..+...-.....+++++++..|+.+..
T Consensus 107 ~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 107 SKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp EETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEET
T ss_pred EecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEEC
Confidence 99875443222323344578999999655555533 2388788765433 333334456789999998888888777
Q ss_pred CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 176 GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
..+.|..++++ .... ..+. .....+..+.+ .. +..+++-...+.|...|..+++.
T Consensus 186 ~~~~I~~~d~d--G~~~-~v~~-~~l~~P~glav-----~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 186 DTNLIESSNML--GLNR-EVIA-DDLPHPFGLTQ-----YQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp TTTEEEEEETT--SCSC-EEEE-ECCSCEEEEEE-----ET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCEEEEEcCC--CCce-EEee-ccCCCceEEEE-----EC-CEEEEecCCCCEEEEEECCCCCc
Confidence 78889999984 2221 1111 11112222222 22 34444545578888888766543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0069 Score=50.82 Aligned_cols=149 Identities=9% Similarity=-0.003 Sum_probs=94.2
Q ss_pred eEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC--CCcEEEE
Q 036605 24 YSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT--NGMASEM 100 (340)
Q Consensus 24 v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--dg~i~~w 100 (340)
...+++.+.+ . ++++-...+.|.++++........+.. .......++++|.+..|+.+.. .+.|...
T Consensus 81 p~glavd~~~g~---------ly~~d~~~~~I~~~~~dG~~~~~l~~~-~~~~P~giavdp~~g~ly~td~~~~~~I~r~ 150 (318)
T 3sov_A 81 PDGLACDWLGEK---------LYWTDSETNRIEVSNLDGSLRKVLFWQ-ELDQPRAIALDPSSGFMYWTDWGEVPKIERA 150 (318)
T ss_dssp CCEEEEETTTTE---------EEEEETTTTEEEEEETTSCSCEEEECS-SCSSEEEEEEEGGGTEEEEEECSSSCEEEEE
T ss_pred ccEEEEEcCCCe---------EEEEECCCCEEEEEECCCCcEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCCEEEEE
Confidence 3456666544 4 555666678899998765433323323 4456789999998777777663 5789998
Q ss_pred eCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc---EEEEECCCCceeEEe-ecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 101 KSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE---VRILSLENGEEVLKF-SDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 101 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~---i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
++............-.....|+++|++..|+.++.. |..+|+.... ...+ .........+++.. ..++.+...
T Consensus 151 ~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P~glav~~--~~lywtd~~ 227 (318)
T 3sov_A 151 GMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFE--DILYWTDWS 227 (318)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSCCSCEEEEEEET--TEEEEEETT
T ss_pred EcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecCCCCCceEEEEeC--CEEEEEecC
Confidence 876433222222233456899999988777765533 9999986433 2333 32345566777753 345554665
Q ss_pred CCeEEEEEc
Q 036605 177 EKHLQVWRC 185 (340)
Q Consensus 177 d~~i~iwd~ 185 (340)
.+.|..++.
T Consensus 228 ~~~V~~~~~ 236 (318)
T 3sov_A 228 THSILACNK 236 (318)
T ss_dssp TTEEEEEET
T ss_pred CCeEEEEEC
Confidence 788888886
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0032 Score=60.06 Aligned_cols=194 Identities=10% Similarity=0.040 Sum_probs=117.6
Q ss_pred eEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 036605 24 YSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSE 103 (340)
Q Consensus 24 v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~ 103 (340)
|.++...+++. |.+|+.++-|..|+..+++........+...|.++...+++. |..++.++-+..||..
T Consensus 175 i~~i~~d~~g~----------lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~ 243 (795)
T 4a2l_A 175 IASTLYRQGDQ----------IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPK 243 (795)
T ss_dssp CEEEEEEETTE----------EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETT
T ss_pred eEEEEECCCCC----------EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCC
Confidence 77888777777 555676656899998877644322211345789998887765 4445555458899988
Q ss_pred CCeEEEEeec-------CCCCeeEEEEccCCCEEEEecCcEEEEECCCCceeEEeec--------CCCCeEEEEECCCCC
Q 036605 104 MGEVIREFKA-------SEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSD--------DVGPLQYVSASDGAK 168 (340)
Q Consensus 104 ~~~~~~~~~~-------~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~~--------~~~~v~~~~~s~~~~ 168 (340)
+++....... ....|.++...++|.+.+...+-|.+||..++.. ..+.. ....|.++...++|.
T Consensus 244 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~ 322 (795)
T 4a2l_A 244 TKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSF-ASYSSNPVENGSLSQRSVRSIFMDSQGG 322 (795)
T ss_dssp TTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEE-EEECCCTTSTTSCSSSCEEEEEECTTSC
T ss_pred CCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeE-EEEecCCCCCCCCCCCcEEEEEEeCCcC
Confidence 7764432211 1346899999999988776555699999877643 33321 225689999999886
Q ss_pred EEEEEEcCCCeEEEEEccCCCCCccCCcee---eec-CCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 169 IIITAGYGEKHLQVWRCDISSKTVNKGPAL---SMR-HSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 169 ~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.- .+.. ++-|..|+.. .... ..... ... ....+..+ .. ..+|. |..|+.++-|..|+..+.
T Consensus 323 lW-igt~-~~Gl~~~~~~--~~~~-~~~~~~~~~~~l~~~~V~~i--~~-d~~g~-lWiGt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 323 MW-LGTY-FGGLNYYHPI--RNRF-KNIRNIPYKNSLSDNVVSCI--VE-DKDKN-LWIGTNDGGLNLYNPITQ 387 (795)
T ss_dssp EE-EEES-SSCEEEECGG--GGSS-EEECCCTTSSSCSCSSEEEE--EE-CTTSC-EEEEESSSCEEEECTTTC
T ss_pred EE-EEEC-CCCeEEeCCC--cccc-eEEcCCCCCCCCCCCeeEEE--EE-CCCCC-EEEEECCCCeEEEcCCCC
Confidence 44 4455 6778888862 2111 00000 000 11123333 22 34554 555777756999987754
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00063 Score=59.88 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=91.9
Q ss_pred CeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC---c----EEEEECCCCc
Q 036605 75 GLAGLAFAK-KGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS---E----VRILSLENGE 146 (340)
Q Consensus 75 ~v~~v~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---~----i~i~d~~~~~ 146 (340)
....|+++| ++..|+.+...+.|..+|+.++...... ........|+++++++.|++++. . +..++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 457899998 4667887776688999999877654433 34456789999999996666543 1 4444432 22
Q ss_pred ee--EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeec--CCCeeeeeecCCCCCCCCEE-
Q 036605 147 EV--LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMR--HSPVAIDCKNSPNGEDGTVI- 221 (340)
Q Consensus 147 ~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l- 221 (340)
.. ..+.. ......++++|++.+|+.+....+.|..++.+ .+.... ..... ..+..+.+ ++++.+|
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~--~~~~~~--~~~~~~~~~P~gia~-----~pdG~~ly 285 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFT--TQETTP--LFTIQDSGWEFHIQF-----HPSGNYAY 285 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETT--TTEEEE--EEECSSSSCCEEEEE-----CTTSSEEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECC--CCcEEE--EEEcCCCCcceeEEE-----cCCCCEEE
Confidence 21 22222 23456788999433455556557889999873 322111 11111 12333444 7888854
Q ss_pred EEEeCCCcEEEEECCC
Q 036605 222 LAVAESGVAYSWDLKT 237 (340)
Q Consensus 222 ~~~s~dg~i~vwd~~~ 237 (340)
++-...+.|+.++...
T Consensus 286 v~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEETTTTEEEEEEEET
T ss_pred EEECCCCEEEEEeCCc
Confidence 4555678899987653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.006 Score=57.75 Aligned_cols=139 Identities=6% Similarity=-0.014 Sum_probs=89.6
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCC----eEEEEeecCCCCe
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT-NGMASEMKSEMG----EVIREFKASEKPI 118 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~~wd~~~~----~~~~~~~~~~~~i 118 (340)
+|+.. ....|+..++........+. ....+.+|+|++.+..||.... .+.|+.+++... .....+.......
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccc-cccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 34433 44568888887665444343 3457889999987676666554 578988988753 2222333334556
Q ss_pred eEEEEccCCCEEEEecC---cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCC-CeEEEEEc
Q 036605 119 SSSAFLCEEKIFALASS---EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGE-KHLQVWRC 185 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~~~---~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d-~~i~iwd~ 185 (340)
..|++.+.+..|+.++. .|.+.++........+.........|++.|.+.+|+.+..+. +.|.+.++
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 88999988877766443 399999876543333344445688999999877777766533 67777776
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.015 Score=48.98 Aligned_cols=182 Identities=12% Similarity=0.144 Sum_probs=103.4
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecC----CC---EEEEEe-C--CCcEEEEeC--CCCeEEEEe
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKK----GR---SLHVVG-T--NGMASEMKS--EMGEVIREF 111 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~----~~---~l~s~~-~--dg~i~~wd~--~~~~~~~~~ 111 (340)
+++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ ++++.. . +.+|.+|++ .++. +..+
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i 116 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM 116 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence 5555566788999999 7888888764 56777777662 22 223333 3 578999966 4444 4444
Q ss_pred ec------CC-CCeeEEEE--ccC-CC-EEEEecCc--EEEEEC---C----CCceeEEeecCCCCeEEEEECCCCCEEE
Q 036605 112 KA------SE-KPISSSAF--LCE-EK-IFALASSE--VRILSL---E----NGEEVLKFSDDVGPLQYVSASDGAKIII 171 (340)
Q Consensus 112 ~~------~~-~~i~~l~~--~~~-~~-~l~~~~~~--i~i~d~---~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 171 (340)
.. .. ..++.+++ +|. +. ++++.+.+ +..|++ . +.+.+++|.. .+.+..+...+...+|+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 21 11 45677777 664 44 45554433 777776 2 3355677764 35678889998888888
Q ss_pred EEEcCCCeEEEEEccCCCCCccCCceeee--cC---CCeeeeeecCCCCCCCC-EEEEEe-CCCcEEEEECC
Q 036605 172 TAGYGEKHLQVWRCDISSKTVNKGPALSM--RH---SPVAIDCKNSPNGEDGT-VILAVA-ESGVAYSWDLK 236 (340)
Q Consensus 172 s~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~-~l~~~s-~dg~i~vwd~~ 236 (340)
.+-. +.-|..++.+...... ....... ++ ...-+.+ .. .+++. +|++.+ .++...+||..
T Consensus 196 v~eE-d~GIw~~da~p~~~~~-~~~v~~~~~g~l~aDvEGLai--~~-~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 196 IAEE-DEAIWKFSAEPDGGSN-GTVIDRADGRHLTRDIEGLTI--YY-AADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEET-TTEEEEEECSTTSCSC-CEEEEEBSSSSBCSCEEEEEE--EE-CGGGCEEEEEEEGGGTEEEEEESS
T ss_pred Eecc-cceEEEEeCCcCCCCC-ceEEEEecCCccccCcceEEE--Ee-cCCCCEEEEEEcCCCCEEEEEECC
Confidence 8666 6544444432222111 0111111 11 1111222 11 34444 555555 57789999986
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0056 Score=58.27 Aligned_cols=151 Identities=11% Similarity=0.030 Sum_probs=100.7
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEec---CCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKST---GRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
...|.++...+++. |.+|+.++-|..||..++... .+. ......|.++...+++. |..|+.++-+
T Consensus 362 ~~~v~~i~~d~~g~----------lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl 429 (781)
T 3v9f_A 362 NKVVSSVCDDGQGK----------LWIGTDGGGINVFENGKRVAI-YNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNI 429 (781)
T ss_dssp SSCEEEEEECTTSC----------EEEEEBSSCEEEEETTEEEEE-CC-----CCCSBEEEEEECTTSC-EEEEETTEEE
T ss_pred CcceEEEEEcCCCC----------EEEEeCCCcEEEEECCCCeEE-EccCCCCCCCcceEEEEECCCCC-EEEEeccCCE
Confidence 35688888887777 777777777999997655432 221 11345789998887775 4556776779
Q ss_pred EEEeCCCCeEEEEee--cCCCCeeEEEEccCCCEEEEecCcEEEEECCCCceeEEeecC-----CCCeEEEEECCCCCEE
Q 036605 98 SEMKSEMGEVIREFK--ASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSDD-----VGPLQYVSASDGAKII 170 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l 170 (340)
..++..+++...... .....|.++...+++.+.+...+-|..||..+++........ ...|.++...++|...
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW 509 (781)
T 3v9f_A 430 SYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW 509 (781)
T ss_dssp EEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE
T ss_pred EEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE
Confidence 999988776433221 134578899998888877766656999998876543222211 3578899999988765
Q ss_pred EEEEcCCCeEEEEEc
Q 036605 171 ITAGYGEKHLQVWRC 185 (340)
Q Consensus 171 ~s~~~~d~~i~iwd~ 185 (340)
+. .. ++-+..||.
T Consensus 510 ig-t~-~~Gl~~~~~ 522 (781)
T 3v9f_A 510 IG-TF-GGGVGIYTP 522 (781)
T ss_dssp EE-ES-SSCEEEECT
T ss_pred EE-Ec-CCCEEEEeC
Confidence 54 44 344666775
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0041 Score=54.69 Aligned_cols=152 Identities=9% Similarity=0.009 Sum_probs=85.5
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCC---C-cEEEEEccCCee-EEEecCCCCCCeEEEEEec-CCCEEEEEeCCC
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSN---G-DILAVDVLTGEM-KWKSTGRHPGGLAGLAFAK-KGRSLHVVGTNG 95 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d---g-~i~i~d~~~~~~-~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg 95 (340)
....+++|+++++ ++++...+ . .+..++...+.. ...+. .-.....++++| ++.++++-..++
T Consensus 182 ~~P~giavd~dG~---------lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~--~~~~P~giavd~~~G~lyv~d~~~~ 250 (433)
T 4hw6_A 182 GQCADVNFTLNGD---------MVVVDDQSSDTNTGIYLFTRASGFTERLSLC--NARGAKTCAVHPQNGKIYYTRYHHA 250 (433)
T ss_dssp SCEEEEEECTTCC---------EEEEECCSCTTSEEEEEECGGGTTCCEEEEE--ECSSBCCCEECTTTCCEEECBTTCS
T ss_pred CCccEEEECCCCC---------EEEEcCCCCcccceEEEEECCCCeecccccc--ccCCCCEEEEeCCCCeEEEEECCCC
Confidence 4578899999988 66665422 1 233333322211 01111 123456788999 554444444568
Q ss_pred cEEEEeCCCCeEEEEe-ecCC-CCeeEEEEccCCCEEEEec---CcEEEEECC--CCce--eEEeecC------------
Q 036605 96 MASEMKSEMGEVIREF-KASE-KPISSSAFLCEEKIFALAS---SEVRILSLE--NGEE--VLKFSDD------------ 154 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~-~~~~-~~i~~l~~~~~~~~l~~~~---~~i~i~d~~--~~~~--~~~~~~~------------ 154 (340)
.|..+|..++.....+ .... .....++++|++..|+.++ +.|+.+++. ++.. ...+.+.
T Consensus 251 ~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~ 330 (433)
T 4hw6_A 251 MISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGT 330 (433)
T ss_dssp EEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGG
T ss_pred EEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCccc
Confidence 8999999877763332 2221 2234699999999665544 338888765 2321 1222221
Q ss_pred ---CCCeEEEEE---------CCCCCEEEEEEcCCCeEEEEEc
Q 036605 155 ---VGPLQYVSA---------SDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 155 ---~~~v~~~~~---------s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
-.....+++ .+++..+ .+....+.|+.++.
T Consensus 331 ~a~~~~P~giav~~n~~y~~dd~~g~ly-vaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 331 GARLWGPNQGIFVKNEAYAGEEDEYDFY-FCDRDSHTVRVLTP 372 (433)
T ss_dssp GSBCSSEEEEEEEECGGGTTSSCCEEEE-EEETTTTEEEEECT
T ss_pred ceEEcCCccEEEEccccccccCCCCcEE-EEECCCCEEEEECC
Confidence 123567888 6666544 44554778888874
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0031 Score=52.64 Aligned_cols=153 Identities=7% Similarity=0.039 Sum_probs=97.9
Q ss_pred CeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCeEEEE-eec----CCC--CeeEEEE---ccCCCEEEEec---------
Q 036605 75 GLAGLAFAKKGRSLHVVG-TNGMASEMKSEMGEVIRE-FKA----SEK--PISSSAF---LCEEKIFALAS--------- 134 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~-~~~----~~~--~i~~l~~---~~~~~~l~~~~--------- 134 (340)
.--+++|++....|+.++ ..+.|..||...+..... +.. ... .+..|.+ .|+++++++.+
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 445789998777777777 689999999986654333 221 111 3578999 68888887533
Q ss_pred ------CcEEEEECC---CCceeEEeec-------------CCCCeEEEEECCCCCEEEEEEcCC-CeEEEEEccCCCCC
Q 036605 135 ------SEVRILSLE---NGEEVLKFSD-------------DVGPLQYVSASDGAKIIITAGYGE-KHLQVWRCDISSKT 191 (340)
Q Consensus 135 ------~~i~i~d~~---~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~s~~~~d-~~i~iwd~~~~~~~ 191 (340)
..|..||+. +++.+....- -......++..++|+..++.+. . +.|...+. .++
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~-~~~~I~rV~p---dG~ 169 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL-GMPAIARVSA---DGK 169 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE-SSCEEEEECT---TSC
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC-CCCeEEEEeC---CCC
Confidence 238999999 7776644421 1134789999999998888776 5 66544443 222
Q ss_pred ccCCceeeecCCC-----eeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 192 VNKGPALSMRHSP-----VAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 192 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
....+. +..+. ....+ .+ .|++..|++....|.|..+|+.
T Consensus 170 ~~~~~~--~~~~~~~~~~G~nGI--v~-~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 170 TVSTFA--WESGNGGQRPGYSGI--TF-DPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CEEEEE--ECCCCSSSCCSCSEE--EE-ETTTTEEEEESSSSSEEEEECS
T ss_pred EEeeee--ecCCCcccccCcceE--EE-eCCCCEEEEEcCCCeEEEEcCC
Confidence 211111 11111 01111 22 6889888888779999999987
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.014 Score=47.11 Aligned_cols=163 Identities=12% Similarity=0.114 Sum_probs=98.3
Q ss_pred CceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee---EEEec-----CCCCCCeEE
Q 036605 7 GSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM---KWKST-----GRHPGGLAG 78 (340)
Q Consensus 7 g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~-----~~h~~~v~~ 78 (340)
|.++..+... .......+++.+++. ++++.-.++.+.++++..... +.... .......-.
T Consensus 58 g~v~~~i~l~---g~~D~EGIa~~~~g~---------~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EG 125 (255)
T 3qqz_A 58 GDLIRTIPLD---FVKDLETIEYIGDNQ---------FVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEG 125 (255)
T ss_dssp CCEEEEEECS---SCSSEEEEEECSTTE---------EEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEE
T ss_pred CCEEEEEecC---CCCChHHeEEeCCCE---------EEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcce
Confidence 6666555421 224567788888888 777766778899998765432 12221 113445789
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCC---CCeEEEEee-------cCCCCeeEEEEccCCCEEEE-ecCc--EEEEECCCC
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSE---MGEVIREFK-------ASEKPISSSAFLCEEKIFAL-ASSE--VRILSLENG 145 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~---~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~~-~~~~--i~i~d~~~~ 145 (340)
++|+|.++.|+++.......+|.+. ....+..+. .....+.+++++|....+++ .+.. +..+|...
T Consensus 126 LA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g- 204 (255)
T 3qqz_A 126 LAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG- 204 (255)
T ss_dssp EEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-
T ss_pred EEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-
Confidence 9999999888887765444444432 111112121 12335789999997666544 3333 88888664
Q ss_pred ceeEEeecCC---------CCeEEEEECCCCCEEEEEEcCCCeEEEEE
Q 036605 146 EEVLKFSDDV---------GPLQYVSASDGAKIIITAGYGEKHLQVWR 184 (340)
Q Consensus 146 ~~~~~~~~~~---------~~v~~~~~s~~~~~l~s~~~~d~~i~iwd 184 (340)
+.+..+.-.. .....|+|.++|+..++ +. .+.+++|.
T Consensus 205 ~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE-~n~~y~f~ 250 (255)
T 3qqz_A 205 EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SE-PNRFYRFT 250 (255)
T ss_dssp CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ET-TTEEEEEE
T ss_pred CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cC-CceEEEEE
Confidence 4554442221 25688999999975555 66 56655554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.034 Score=51.24 Aligned_cols=155 Identities=8% Similarity=-0.043 Sum_probs=99.5
Q ss_pred CCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe-CCCcEEE
Q 036605 22 VSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNGMASE 99 (340)
Q Consensus 22 ~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~~ 99 (340)
..+..++|.+.+ + ++++-...+.|+.+++........+.. .-....++++...+..|+.+. ..+.|.+
T Consensus 349 ~~~~~ld~d~~~~~---------ly~sD~~~~~I~r~~~~g~~~~~v~~~-~~~~p~GlAvD~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 349 RHAIAIDYDPVEGY---------IYWTDDEVRAIRRSFIDGSGSQFVVTA-QIAHPDGIAVDWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp SSEEEEEEETTTTE---------EEEEETTTTEEEEEETTSCSCEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred CccEEEEEEcCCCe---------EEEEeCCCCeEEEEEcCCCccEEEEEC-CCCCcCceEEecccCcEEEEeCCCCcEEE
Confidence 346678888754 4 555555678888888775443333332 334677899987666666665 4578999
Q ss_pred EeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 100 MKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 100 wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
.++........+...-.....|++.|....|+.++ ..|...++............-.....+++++++..|+.+..
T Consensus 419 ~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~ 498 (619)
T 3s94_A 419 TRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDA 498 (619)
T ss_dssp EETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEEC
Confidence 99875433222333345678999999744554433 23766676543222222333467789999998888888777
Q ss_pred CCCeEEEEEcc
Q 036605 176 GEKHLQVWRCD 186 (340)
Q Consensus 176 ~d~~i~iwd~~ 186 (340)
..+.|..++++
T Consensus 499 ~~~~I~~~~~d 509 (619)
T 3s94_A 499 KTDKIEVMNTD 509 (619)
T ss_dssp TTTEEEEEESS
T ss_pred CCCEEEEEecC
Confidence 67888888873
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0013 Score=61.18 Aligned_cols=112 Identities=16% Similarity=0.138 Sum_probs=73.3
Q ss_pred EEEeec-cccccccccCceEEEEEcCCC-----------cEEEEEccCCeeE--EEecCCCCCCeEEEEEecCCCEEEEE
Q 036605 26 CLACGF-VGKKRRKERGTLLLALGTSNG-----------DILAVDVLTGEMK--WKSTGRHPGGLAGLAFAKKGRSLHVV 91 (340)
Q Consensus 26 ~l~~sp-~~~~~~~~~~~~~l~~g~~dg-----------~i~i~d~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~ 91 (340)
..++.| +++ +++.|+.+. .+.+||..+++.. ..+...+.....++++..+++.++.|
T Consensus 190 ~~av~~~~g~---------l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~G 260 (656)
T 1k3i_A 190 AAAIEPTSGR---------VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTG 260 (656)
T ss_dssp EEEEETTTTE---------EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEEC
T ss_pred eEEEEecCCE---------EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeC
Confidence 456677 777 888876543 5889999887632 22222133334457778889999988
Q ss_pred eC-CCcEEEEeCCCCeEEEEeecCC-CCeeEEEEccCCCEEEEec--------CcEEEEECCCCc
Q 036605 92 GT-NGMASEMKSEMGEVIREFKASE-KPISSSAFLCEEKIFALAS--------SEVRILSLENGE 146 (340)
Q Consensus 92 ~~-dg~i~~wd~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~~--------~~i~i~d~~~~~ 146 (340)
+. +..+.+||+.+.+-...-.... ..-.++++.+++++++.++ .++.+||..+.+
T Consensus 261 G~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 261 GNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp SSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred CCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 84 4689999998775332211111 1224566778899888876 239999998775
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.023 Score=47.78 Aligned_cols=191 Identities=9% Similarity=0.034 Sum_probs=101.6
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE-EEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA-SEM 100 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i-~~w 100 (340)
..+..+.+.++++ +++++. +|.|+. ....|+.-..+...+...+..+++.+++..++.+ .+|.+ +.+
T Consensus 122 ~~~~~i~~~~~~~---------~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~ 189 (327)
T 2xbg_A 122 GSPRLIKALGNGS---------AEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTW 189 (327)
T ss_dssp SCEEEEEEEETTE---------EEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEE
T ss_pred CCeEEEEEECCCC---------EEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEe
Confidence 4567777777677 666554 555432 2233442222222256789999999988777665 44444 444
Q ss_pred eC--CCCeEEEEeecCCCCeeEEEEccCCCEEEEe-cCcEEEEECCCCceeEEeec----CCCCeEEEEECCCCCEEEEE
Q 036605 101 KS--EMGEVIREFKASEKPISSSAFLCEEKIFALA-SSEVRILSLENGEEVLKFSD----DVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 101 d~--~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~~i~i~d~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~ 173 (340)
|- .+.+.+. ......+..+.+.+++..++.+ ++.+++.+...++.-..+.. +...+..+.+.+++..+++
T Consensus 190 d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 266 (327)
T 2xbg_A 190 EPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA- 266 (327)
T ss_dssp CTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE-
T ss_pred CCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE-
Confidence 42 2333331 2234568889999998877665 34466654332333222221 2235788999887766555
Q ss_pred EcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 174 GYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
+. ++.+ ++.. ..++.-.........+..+..+ .+ .+ +..+++++.+|.|.-++-
T Consensus 267 g~-~g~i-~~S~--DgG~tW~~~~~~~~~~~~~~~v--~~-~~-~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 267 GG-AGAL-LCSQ--DGGQTWQQDVDVKKVPSNFYKI--LF-FS-PDQGFILGQKGILLRYVT 320 (327)
T ss_dssp ES-TTCE-EEES--STTSSCEECGGGTTSSSCCCEE--EE-EE-TTEEEEECSTTEEEEECC
T ss_pred eC-CCeE-EEeC--CCCcccEEcCccCCCCCCeEEE--EE-EC-CCceEEEcCCceEEEEcC
Confidence 55 6766 3333 2232211111000111222333 22 22 345777788998776654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.026 Score=53.65 Aligned_cols=196 Identities=12% Similarity=0.068 Sum_probs=114.3
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC----CCCCCeEEEEEecCCCEEEEEeCCCc
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG----RHPGGLAGLAFAKKGRSLHVVGTNGM 96 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----~h~~~v~~v~~~~~~~~l~s~~~dg~ 96 (340)
...|.++...+++. |.+|+. +-|..||..+++....... .....|.++...++|...+ |+.++-
T Consensus 449 ~~~v~~i~~d~~g~----------lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~G 516 (781)
T 3v9f_A 449 LLDVRVFYEDKNKK----------IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGG 516 (781)
T ss_dssp CCCEEEEEECTTSE----------EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSC
T ss_pred CCeEEEEEECCCCC----------EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCC
Confidence 45788888887777 555565 4588999887764432221 0135789999988876544 555445
Q ss_pred EEEEeCCCCeEEEEeec----CCCCeeEEEEccCCCEEEEecCcE-EEEECCCCceeEEeec----CCCCeEEEEECCCC
Q 036605 97 ASEMKSEMGEVIREFKA----SEKPISSSAFLCEEKIFALASSEV-RILSLENGEEVLKFSD----DVGPLQYVSASDGA 167 (340)
Q Consensus 97 i~~wd~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~~~~i-~i~d~~~~~~~~~~~~----~~~~v~~~~~s~~~ 167 (340)
+..||..+++.. .+.. ....|.++...++|.+.++...-+ ..||..+++ ...+.. ....|.++...++|
T Consensus 517 l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~-~~~~~~~~gl~~~~i~~i~~d~~g 594 (781)
T 3v9f_A 517 VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFD-YQVFQRKEGLPNTHIRAISEDKNG 594 (781)
T ss_dssp EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCC-CEEECGGGTCSCCCCCEEEECSSS
T ss_pred EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCc-EEEccccCCCCCceEEEEEECCCC
Confidence 778998776543 3321 234688999999998877766556 889887764 333321 12457888888888
Q ss_pred CEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 168 KIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
...++ +. .| |..|+. .++. ...+...-+-+...+...+.+..++|. |..|+.+| +..++....
T Consensus 595 ~lW~~-t~-~G-l~~~~~--~~~~-~~~~~~~dGl~~~~f~~~~~~~~~~G~-l~~g~~~G-l~~f~p~~~ 657 (781)
T 3v9f_A 595 NIWAS-TN-TG-ISCYIT--SKKC-FYTYDHSNNIPQGSFISGCVTKDHNGL-IYFGSING-LCFFNPDIA 657 (781)
T ss_dssp CEEEE-CS-SC-EEEEET--TTTE-EEEECGGGTCCSSCEEEEEEEECTTSC-EEEEETTE-EEEECSCCG
T ss_pred CEEEE-cC-Cc-eEEEEC--CCCc-eEEecccCCccccccccCceEECCCCE-EEEECCCc-eEEEChhhc
Confidence 76555 33 44 666775 2221 111110001111111111112145665 55677788 777776543
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.011 Score=49.04 Aligned_cols=137 Identities=9% Similarity=0.049 Sum_probs=68.6
Q ss_pred EEEEEcCC-----CcEEEEEccCCe---eEEEecCCCCCCe-EEEEEecCCCEEEEEeCC-----CcEEEEeCCCCeEEE
Q 036605 44 LLALGTSN-----GDILAVDVLTGE---MKWKSTGRHPGGL-AGLAFAKKGRSLHVVGTN-----GMASEMKSEMGEVIR 109 (340)
Q Consensus 44 ~l~~g~~d-----g~i~i~d~~~~~---~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~ 109 (340)
+++.|+.+ ..+.+||..+.+ ....-.- ....- .+++.. ++..++.|+.+ ..+.+||+.+.+-..
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~-p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 142 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPM-NVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM 142 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCC-SSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCC-CCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEE
Confidence 77777754 468999988876 3322111 11111 122222 56666666543 368899988765332
Q ss_pred EeecCCCCe-eEEEEccCCCEEEEec-------CcEEEEECCCCceeEE--eecCCCCeEEEEECCCCCEEEEEEcC---
Q 036605 110 EFKASEKPI-SSSAFLCEEKIFALAS-------SEVRILSLENGEEVLK--FSDDVGPLQYVSASDGAKIIITAGYG--- 176 (340)
Q Consensus 110 ~~~~~~~~i-~~l~~~~~~~~l~~~~-------~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~~--- 176 (340)
.-....... .+++. -++++++.++ .++.+||+.+.+-... +.........+.+ ++..++.++..
T Consensus 143 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~ 219 (301)
T 2vpj_A 143 LGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTA 219 (301)
T ss_dssp EEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSS
T ss_pred CCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCc
Confidence 211111111 22222 2566666543 2389999987743221 1111111222222 45566665552
Q ss_pred -CCeEEEEEc
Q 036605 177 -EKHLQVWRC 185 (340)
Q Consensus 177 -d~~i~iwd~ 185 (340)
...+.+||+
T Consensus 220 ~~~~v~~yd~ 229 (301)
T 2vpj_A 220 HLSSVEAYNI 229 (301)
T ss_dssp BCCCEEEEET
T ss_pred ccceEEEEeC
Confidence 145788887
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.02 Score=47.52 Aligned_cols=137 Identities=9% Similarity=0.011 Sum_probs=69.3
Q ss_pred EEEEEcCC----CcEEEEEccCCeeEEEecCCCCCCe-EEEEEecCCCEEEEEeCC------CcEEEEeCCCCeEEEEee
Q 036605 44 LLALGTSN----GDILAVDVLTGEMKWKSTGRHPGGL-AGLAFAKKGRSLHVVGTN------GMASEMKSEMGEVIREFK 112 (340)
Q Consensus 44 ~l~~g~~d----g~i~i~d~~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~ 112 (340)
+++.|+.+ ..+.+||..+.+....-.- ..... .+++. -++..++.|+.+ ..+.+||+.+.+-...-.
T Consensus 58 lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~ 135 (306)
T 3ii7_A 58 VYILGGSQLFPIKRMDCYNVVKDSWYSKLGP-PTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS 135 (306)
T ss_dssp EEEECCBSSSBCCEEEEEETTTTEEEEEECC-SSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC
T ss_pred EEEEeCCCCCCcceEEEEeCCCCeEEECCCC-CccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC
Confidence 77777754 6789999988864332211 11111 12222 256666666654 468899998875332211
Q ss_pred cCCCC-eeEEEEccCCCEEEEec-----------CcEEEEECCCCceeEE--eecCCCCeEEEEECCCCCEEEEEEcCC-
Q 036605 113 ASEKP-ISSSAFLCEEKIFALAS-----------SEVRILSLENGEEVLK--FSDDVGPLQYVSASDGAKIIITAGYGE- 177 (340)
Q Consensus 113 ~~~~~-i~~l~~~~~~~~l~~~~-----------~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~~d- 177 (340)
..... -.+++. -++++++.++ .++.+||+.+.+-... +.........+.+ +++.++.++...
T Consensus 136 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~ 212 (306)
T 3ii7_A 136 MLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGL 212 (306)
T ss_dssp CSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETT
T ss_pred CcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCC
Confidence 11111 122222 3555555543 3388999988743211 1111111122222 455666655421
Q ss_pred ---CeEEEEEc
Q 036605 178 ---KHLQVWRC 185 (340)
Q Consensus 178 ---~~i~iwd~ 185 (340)
..+.+||+
T Consensus 213 ~~~~~~~~yd~ 223 (306)
T 3ii7_A 213 GGLDNVEYYDI 223 (306)
T ss_dssp EEBCCEEEEET
T ss_pred CCCceEEEeeC
Confidence 45778887
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.036 Score=47.03 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=91.5
Q ss_pred CeEEEEeeccccccccccCceEEEEE------------cCCCcEEEEEccC--Cee-EEEecCC----CCCCeEEEEEec
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALG------------TSNGDILAVDVLT--GEM-KWKSTGR----HPGGLAGLAFAK 83 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g------------~~dg~i~i~d~~~--~~~-~~~~~~~----h~~~v~~v~~~~ 83 (340)
.+-.++..|+|. .++++ ..+|.|.++|..+ ++. ...+.+. .......+.+.+
T Consensus 51 G~EDi~~~~~G~---------~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~ 121 (355)
T 3sre_A 51 GSEDLEILPNGL---------AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFI 121 (355)
T ss_dssp CCCEEEECTTSE---------EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEE
T ss_pred CcceeEEcCCCe---------EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEE
Confidence 445566778776 44443 2689999999874 231 1122221 223567788766
Q ss_pred --CCC-EEEEEeC---CCcEEEEeCCC--CeE--EEEeecC-CCCeeEEEEccCCCEEEEec------------------
Q 036605 84 --KGR-SLHVVGT---NGMASEMKSEM--GEV--IREFKAS-EKPISSSAFLCEEKIFALAS------------------ 134 (340)
Q Consensus 84 --~~~-~l~s~~~---dg~i~~wd~~~--~~~--~~~~~~~-~~~i~~l~~~~~~~~l~~~~------------------ 134 (340)
++. +|+.+.. +..|.+|++.. +.. +..+.+. -.....+.+.++|.+.++.+
T Consensus 122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCC
Confidence 354 5666543 35677766543 322 2223322 23568999999999877743
Q ss_pred -CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 135 -SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 135 -~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
+.|+-+|. ++ +..+...-...+.++|+||+++++.+....+.|..|+++
T Consensus 202 ~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 202 WSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp CEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 11444444 32 222222234568999999999999887768899999985
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00082 Score=62.98 Aligned_cols=177 Identities=7% Similarity=-0.023 Sum_probs=99.8
Q ss_pred CCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCCC----CeEEEEeecCCCCeeEEEEc
Q 036605 50 SNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT-NGMASEMKSEM----GEVIREFKASEKPISSSAFL 124 (340)
Q Consensus 50 ~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~~wd~~~----~~~~~~~~~~~~~i~~l~~~ 124 (340)
....|+..++.+.+....+. ....+.+|+|++.+..|+.+.. .+.|..+++.. ......+.........|++.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred CccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 44678888888766543333 3345778999998888877654 47899999875 22221222222235678888
Q ss_pred cCCCEEEEec---CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCC-CeEEEEEccCCCCCccCCce-ee
Q 036605 125 CEEKIFALAS---SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGE-KHLQVWRCDISSKTVNKGPA-LS 199 (340)
Q Consensus 125 ~~~~~l~~~~---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d-~~i~iwd~~~~~~~~~~~~~-~~ 199 (340)
+.+..|+.++ +.|.++++........+.........++++|.+.+|+.+.... +.|.+++++ . .....+. ..
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d--G-~~~~~l~~~~ 538 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--G-VDIYSLVTEN 538 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS--S-CCCCEESCSS
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC--C-CCeeEEEeCC
Confidence 6555554433 3499999876543322222234567889999766666644423 677777763 2 1111111 01
Q ss_pred ecCCCeeeeeecCCCCCC-CCEEEEEeCCCcEEEEECCC
Q 036605 200 MRHSPVAIDCKNSPNGED-GTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~l~~~s~dg~i~vwd~~~ 237 (340)
+. .+.-+.+ +++ +.++++-+..+.|.++++..
T Consensus 539 l~-~PnGlav-----d~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 539 IQ-WPNGITL-----DLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CS-SCCCEEE-----CTTTCCEEEEETTTTEEEEECSSS
T ss_pred CC-CccEEEE-----eccCCEEEEEecCCCeEEEEccCC
Confidence 11 1222333 444 44555556667899998864
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.038 Score=45.72 Aligned_cols=137 Identities=14% Similarity=0.114 Sum_probs=68.2
Q ss_pred EEEEEcCC-----CcEEEEEccCCeeEEEecCCCCCCe-EEEEEecCCCEEEEEeCCC-----cEEEEeCCCCeEEEEee
Q 036605 44 LLALGTSN-----GDILAVDVLTGEMKWKSTGRHPGGL-AGLAFAKKGRSLHVVGTNG-----MASEMKSEMGEVIREFK 112 (340)
Q Consensus 44 ~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~ 112 (340)
+++.|+.+ ..+.+||..+.+... +.......- .+++. -++..++.|+.++ .+.+||+.+.+-...-.
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 141 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP 141 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC
T ss_pred EEEEeCcCCCccccceEEECCCCCceee-CCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC
Confidence 67777654 368899988876432 221011111 12222 2566667776553 57788988765332211
Q ss_pred cCCC-CeeEEEEccCCCEEEEec---------CcEEEEECCCCceeE--EeecCCCCeEEEEECCCCCEEEEEEcCC---
Q 036605 113 ASEK-PISSSAFLCEEKIFALAS---------SEVRILSLENGEEVL--KFSDDVGPLQYVSASDGAKIIITAGYGE--- 177 (340)
Q Consensus 113 ~~~~-~i~~l~~~~~~~~l~~~~---------~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~~d--- 177 (340)
.... .-.+++. -++++++.++ .++.+||+.+.+-.. .+.........+.+ ++..++.++...
T Consensus 142 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~ 218 (302)
T 2xn4_A 142 MNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLV 218 (302)
T ss_dssp CSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSB
T ss_pred CCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcc
Confidence 1111 1122222 2455555543 238899998764322 11111112222222 455666655521
Q ss_pred -CeEEEEEc
Q 036605 178 -KHLQVWRC 185 (340)
Q Consensus 178 -~~i~iwd~ 185 (340)
..+.+||+
T Consensus 219 ~~~~~~yd~ 227 (302)
T 2xn4_A 219 RKSVEVYDP 227 (302)
T ss_dssp CCCEEEEET
T ss_pred cceEEEEeC
Confidence 35788887
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.11 Score=47.91 Aligned_cols=200 Identities=7% Similarity=-0.016 Sum_probs=115.9
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-----CCCCCeEEEEEecCCCEEEEEe-CCC
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-----RHPGGLAGLAFAKKGRSLHVVG-TNG 95 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~l~s~~-~dg 95 (340)
..+..++|.+.+. .++.+=...+.|+.++.........+.. .....+.++++...++.|+.+. ..+
T Consensus 340 ~~~~~ld~d~~~~--------~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~ 411 (628)
T 4a0p_A 340 RNVRAIDYDPLDK--------QLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATN 411 (628)
T ss_dssp SCEEEEEEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTT
T ss_pred CCceEEEEecCCC--------eEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCC
Confidence 4467788887653 0444545567888887654332222221 0234688999998877776554 567
Q ss_pred cEEEEeCCCCeEEEEe-ecCCCCeeEEEEcc-CCCEEEE-ec-C--cEEEEECCCCceeEEeecCCCCeEEEEECCCCCE
Q 036605 96 MASEMKSEMGEVIREF-KASEKPISSSAFLC-EEKIFAL-AS-S--EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKI 169 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~-~~~~~~i~~l~~~~-~~~~l~~-~~-~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 169 (340)
.|.+.++. |+....+ .........|++.| .|.++.+ .+ . .|...++........+...-.....+++++++..
T Consensus 412 ~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~ 490 (628)
T 4a0p_A 412 VINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGK 490 (628)
T ss_dssp EEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred EEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCE
Confidence 89999986 4544333 33445689999999 4555555 22 2 3666666533222222333456789999998888
Q ss_pred EEEEEcCCCeEEEEEccCCCCCccCCcee-eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 170 IITAGYGEKHLQVWRCDISSKTVNKGPAL-SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 170 l~s~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
|+.+....+.|..++++ . .....+.. .+.| +..+.+ .++..+.+-...+.|...|..+++.
T Consensus 491 LYw~D~~~~~I~~~~~d--G-~~r~~~~~~~~~~-P~glav------~~~~ly~tD~~~~~i~~~~k~~G~~ 552 (628)
T 4a0p_A 491 LFWADSDLRRIESSDLS--G-ANRIVLEDSNILQ-PVGLTV------FENWLYWIDKQQQMIEKIDMTGREG 552 (628)
T ss_dssp EEEEETTTTEEEEEETT--S-CSCEEEECSSCSC-EEEEEE------ETTEEEEEETTTTEEEEEETTSSSC
T ss_pred EEEEeCCCCEEEEEeCC--C-CceEEEEcCCCCC-cEEEEE------ECCEEEEEECCCCeEEEEECcCCCC
Confidence 88877667889888884 2 11111110 0112 222222 1234445555566777777766553
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.036 Score=46.57 Aligned_cols=151 Identities=11% Similarity=0.066 Sum_probs=89.8
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASE 99 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~ 99 (340)
....+..+++.|+++ +++++. +|.++.-+-..+..-..+.......+..+.+.+++..+ .++.+|.+.+
T Consensus 161 ~~~~~~~~~~~~~~~---------~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~ 229 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGE---------YVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAF 229 (327)
T ss_dssp CCCCEEEEEECTTSC---------EEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEE
T ss_pred CCcceEEEEEcCCCc---------EEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEE
Confidence 345688899999888 676664 45554432111332222222255688999999888654 5567788877
Q ss_pred EeCCCCeEEEEeecC----CCCeeEEEEccCCCEEEEecCc-EEEEECCCCceeEEee---cCCCCeEEEEECCCCCEEE
Q 036605 100 MKSEMGEVIREFKAS----EKPISSSAFLCEEKIFALASSE-VRILSLENGEEVLKFS---DDVGPLQYVSASDGAKIII 171 (340)
Q Consensus 100 wd~~~~~~~~~~~~~----~~~i~~l~~~~~~~~l~~~~~~-i~i~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~ 171 (340)
.+...|+.-..+... ...+.++++.+++.+++++... + .+....++.-..+. .....+..+.|.+++. ++
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~ 307 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GF 307 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EE
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eE
Confidence 643334433333211 2357889999888877775544 5 45555554433333 2245678888876654 55
Q ss_pred EEEcCCCeEEEEE
Q 036605 172 TAGYGEKHLQVWR 184 (340)
Q Consensus 172 s~~~~d~~i~iwd 184 (340)
+++. +|.|.-++
T Consensus 308 ~~G~-~G~i~~~~ 319 (327)
T 2xbg_A 308 ILGQ-KGILLRYV 319 (327)
T ss_dssp EECS-TTEEEEEC
T ss_pred EEcC-CceEEEEc
Confidence 5566 78766554
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.058 Score=44.93 Aligned_cols=126 Identities=13% Similarity=0.032 Sum_probs=61.4
Q ss_pred EEEEEccCCeeEEEecCCCCCCe--EEEEEecCCCEEEEEeCC--------CcEEEEeCCCCeEEEEeecCCCCe-eEEE
Q 036605 54 ILAVDVLTGEMKWKSTGRHPGGL--AGLAFAKKGRSLHVVGTN--------GMASEMKSEMGEVIREFKASEKPI-SSSA 122 (340)
Q Consensus 54 i~i~d~~~~~~~~~~~~~h~~~v--~~v~~~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~i-~~l~ 122 (340)
+.+||..+++.. .+.. -..+- .+++.. ++..++.|+.+ ..+.+||+.+.+-...-....... .+++
T Consensus 69 ~~~~d~~~~~W~-~~~~-~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 145 (315)
T 4asc_A 69 FLQFDHLDSEWL-GMPP-LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL 145 (315)
T ss_dssp EEEEETTTTEEE-ECCC-BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred eEEecCCCCeEE-ECCC-CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE
Confidence 788998887643 2222 11111 122222 45555666532 458899998765322111111111 2222
Q ss_pred EccCCCEEEEecC--------cEEEEECCCCceeE--EeecCCCCeEEEEECCCCCEEEEEEcCCC----eEEEEEc
Q 036605 123 FLCEEKIFALASS--------EVRILSLENGEEVL--KFSDDVGPLQYVSASDGAKIIITAGYGEK----HLQVWRC 185 (340)
Q Consensus 123 ~~~~~~~l~~~~~--------~i~i~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~~d~----~i~iwd~ 185 (340)
. -++++++.++. ++.+||+.+.+-.. .+.........+.+ +++.++.++..+. .+.+||+
T Consensus 146 ~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 146 S-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp E-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEET
T ss_pred E-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEEC
Confidence 2 45566666543 28999998764321 11111111222222 5566777666322 4677776
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.085 Score=43.97 Aligned_cols=127 Identities=14% Similarity=0.097 Sum_probs=60.8
Q ss_pred EEEEEccCCeeEEEecC-CCCCCeEEEEEecCCCEEEEEeCC-------CcEEEEeCCCCeEEEEeecCCCCe-eEEEEc
Q 036605 54 ILAVDVLTGEMKWKSTG-RHPGGLAGLAFAKKGRSLHVVGTN-------GMASEMKSEMGEVIREFKASEKPI-SSSAFL 124 (340)
Q Consensus 54 i~i~d~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d-------g~i~~wd~~~~~~~~~~~~~~~~i-~~l~~~ 124 (340)
+.+||..+.+... +.. .....-.+++.. ++..++.|+.+ ..+.+||+.+.+-...-....... .+++.
T Consensus 80 ~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 156 (318)
T 2woz_A 80 FFQLDNVSSEWVG-LPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS- 156 (318)
T ss_dssp EEEEETTTTEEEE-CSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-
T ss_pred EEEEeCCCCcEEE-CCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-
Confidence 7889988876432 221 011111122222 56666666653 247888988765332211111111 12222
Q ss_pred cCCCEEEEecC--------cEEEEECCCCceeEE--eecCCCCeEEEEECCCCCEEEEEEcCC----CeEEEEEc
Q 036605 125 CEEKIFALASS--------EVRILSLENGEEVLK--FSDDVGPLQYVSASDGAKIIITAGYGE----KHLQVWRC 185 (340)
Q Consensus 125 ~~~~~l~~~~~--------~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~~d----~~i~iwd~ 185 (340)
.++++++.++. ++.+||+.+.+-... +.........+.+ +++.++.+|..+ ..+.+||+
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 229 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDL 229 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEET
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEEC
Confidence 45666655442 289999988743221 1111111122222 456666666522 34667776
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.12 E-value=0.079 Score=52.51 Aligned_cols=137 Identities=15% Similarity=0.120 Sum_probs=82.8
Q ss_pred EEEEEc----------CCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEE-Eee
Q 036605 44 LLALGT----------SNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIR-EFK 112 (340)
Q Consensus 44 ~l~~g~----------~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~ 112 (340)
+|++|+ ..|.|++|++..++..........++|++++-- +| +|+++ -...|++|++...+.+. ...
T Consensus 846 ~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~~~ 922 (1158)
T 3ei3_A 846 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTECN 922 (1158)
T ss_dssp EEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEEEE
T ss_pred EEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEEee
Confidence 888887 358899999986654333322256789998854 35 44443 34689999997655333 111
Q ss_pred cCCCCeeEEEEccCCCEEEEecCc--E--EEEECCCCceeEEe--ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 113 ASEKPISSSAFLCEEKIFALASSE--V--RILSLENGEEVLKF--SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 113 ~~~~~i~~l~~~~~~~~l~~~~~~--i--~i~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
... .+..+.+...+.+++++|-. + .-|+...++ +..+ ..+..+++++.|-.++ .++.+.. +|.+.+...+
T Consensus 923 ~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~-L~~~a~D~~~~~vta~~~ld~~-t~l~aD~-~gNl~vl~~~ 998 (1158)
T 3ei3_A 923 HYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN-FEEIARDFNPNWMSAVEILDDD-NFLGAEN-AFNLFVCQKD 998 (1158)
T ss_dssp ECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTE-EEEEEECCSCBCEEEEEEEETT-EEEEEET-TSEEEEEEEC
T ss_pred ccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCe-EEEEEeecccccEEEEEEEccC-cEEEEcC-CCcEEEEecC
Confidence 111 13333343456777777654 4 445655443 3333 2345678888887665 4555444 8999999885
Q ss_pred C
Q 036605 187 I 187 (340)
Q Consensus 187 ~ 187 (340)
.
T Consensus 999 ~ 999 (1158)
T 3ei3_A 999 S 999 (1158)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.026 Score=50.09 Aligned_cols=157 Identities=11% Similarity=0.002 Sum_probs=91.1
Q ss_pred eEEEEEec-CCCEEEEEeCC-CcEEEEeCCCCeEEEEeecCC---CCeeEEEE-------ccCCCEEEEec-C------c
Q 036605 76 LAGLAFAK-KGRSLHVVGTN-GMASEMKSEMGEVIREFKASE---KPISSSAF-------LCEEKIFALAS-S------E 136 (340)
Q Consensus 76 v~~v~~~~-~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~---~~i~~l~~-------~~~~~~l~~~~-~------~ 136 (340)
...|+|+| ++..|+.+... +.|++.|+.++.......... .....|+| ++++..|++++ . .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 56899998 45666666554 679999998877665444322 24789999 99998655532 1 1
Q ss_pred --EEEEECCC-Ccee-----EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccC-----CCCCcc-----C----
Q 036605 137 --VRILSLEN-GEEV-----LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDI-----SSKTVN-----K---- 194 (340)
Q Consensus 137 --i~i~d~~~-~~~~-----~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~-----~~~~~~-----~---- 194 (340)
|.+++... +... ..+... .....++++|++.+|+.+...++.|..+|+.. .++... .
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 66666433 2211 122211 23457788997667777677688999999840 022220 0
Q ss_pred -CceeeecCCCeeeeeecCCCCCCCCE-EEEEeCCCcEEEEECC
Q 036605 195 -GPALSMRHSPVAIDCKNSPNGEDGTV-ILAVAESGVAYSWDLK 236 (340)
Q Consensus 195 -~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~s~dg~i~vwd~~ 236 (340)
...+......+...+ ++ ++++.+ +++-+..++|+.++..
T Consensus 300 ~~~l~~~~~~~~p~~i--a~-~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 300 FKQLFTIADPSWEFQI--FI-HPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEEEEECSSSSCCEEE--EE-CTTSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEecCCCCCceEE--EE-cCCCCEEEEEeCCCCEEEEEecC
Confidence 011122222222222 33 788885 4444566788886643
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.11 Score=44.88 Aligned_cols=188 Identities=11% Similarity=0.122 Sum_probs=116.9
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-CeEEEEeecCC----CCe
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEM-GEVIREFKASE----KPI 118 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~----~~i 118 (340)
.+|.-. ..++.|||+++...+..+. ....|..=.|-.+ +.|+..+ +..|+.|++.. ..++..|..|. ..|
T Consensus 79 iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QI 153 (494)
T 1bpo_A 79 VIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQI 153 (494)
T ss_dssp CEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEE
T ss_pred EEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceE
Confidence 677665 7799999999998887776 3456777777643 4555544 45899999964 34555565543 456
Q ss_pred eEEEEccCCCEEEEe-----c----CcEEEEECCCCceeEEeecCCCCeEEEEECCC--CCEEEEEEcC---CCeEEEEE
Q 036605 119 SSSAFLCEEKIFALA-----S----SEVRILSLENGEEVLKFSDDVGPLQYVSASDG--AKIIITAGYG---EKHLQVWR 184 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~-----~----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~~---d~~i~iwd 184 (340)
-....+++.++++.. + |.+.+|..+.+ .-+.+.+|...-..+.+..+ ...+++-+.. .+.++|.+
T Consensus 154 InY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~E 232 (494)
T 1bpo_A 154 INYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE 232 (494)
T ss_dssp EEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEE
T ss_pred EEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEE
Confidence 677788999988652 2 23889988766 44667777665554544322 1223333332 37899999
Q ss_pred ccCC-CCC-ccCCceeeecCC-------CeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 185 CDIS-SKT-VNKGPALSMRHS-------PVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 185 ~~~~-~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+... .+. ....-...+..+ |..+.+ ++....++..+.-|.|++||+.++..+.
T Consensus 233 i~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv-----s~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 233 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-----SEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp CSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE-----ETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred cCCCccCCCCccceeeeeeCCcccccCceeEEEe-----cccCCEEEEEecCceEEEEecccceeee
Confidence 8432 111 111101111111 122223 5666778889999999999999987665
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.057 Score=45.97 Aligned_cols=100 Identities=10% Similarity=0.049 Sum_probs=63.0
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe-eEEEec--CCCCCCeEEEEEecC---CCEEEEEeC--
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE-MKWKST--GRHPGGLAGLAFAKK---GRSLHVVGT-- 93 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~--~~h~~~v~~v~~~~~---~~~l~s~~~-- 93 (340)
.....|+|.|+++ + +++..+|.|++++ .+++ .+..+. .........|+|+|+ +..|+.+..
T Consensus 29 ~~P~~ia~~pdG~---------l-~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~ 97 (354)
T 3a9g_A 29 EVPWSIAPLGGGR---------Y-LVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYF 97 (354)
T ss_dssp SCEEEEEEEETTE---------E-EEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred CCCeEEEEcCCCe---------E-EEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEecc
Confidence 4567899999999 4 4445669999997 4554 222221 112356899999998 566666543
Q ss_pred --C----CcEEEEeCCCC-------eEE-EEeec-CCCCeeEEEEccCCCEEEE
Q 036605 94 --N----GMASEMKSEMG-------EVI-REFKA-SEKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 94 --d----g~i~~wd~~~~-------~~~-~~~~~-~~~~i~~l~~~~~~~~l~~ 132 (340)
+ ..|..|+.... +.+ ..+.. .......|+|.|||.++++
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 98 AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT 151 (354)
T ss_dssp CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence 2 57888887654 111 11221 1123467999999987776
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.029 Score=47.72 Aligned_cols=99 Identities=17% Similarity=0.117 Sum_probs=62.9
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE--EEec--CCCCCCeEEEEEecC---CCEEEEEeCC
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK--WKST--GRHPGGLAGLAFAKK---GRSLHVVGTN 94 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~~--~~h~~~v~~v~~~~~---~~~l~s~~~d 94 (340)
.....|+|.|+|+ +++ +..+|.|++++ +++.. ..+. .........|+|+|+ +..|+.+...
T Consensus 31 ~~P~~ia~~pdG~---------l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~ 98 (352)
T 2ism_A 31 EVPWALAFLPDGG---------MLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTV 98 (352)
T ss_dssp SCEEEEEECTTSC---------EEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCceEEEEcCCCe---------EEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence 3567899999999 544 45669999998 45422 1111 112457899999998 6666665442
Q ss_pred ------CcEEEEeCCCCe-----EEE-Eee---cCCCCeeEEEEccCCCEEEE
Q 036605 95 ------GMASEMKSEMGE-----VIR-EFK---ASEKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 95 ------g~i~~wd~~~~~-----~~~-~~~---~~~~~i~~l~~~~~~~~l~~ 132 (340)
..|..|+...+. .+. .+. ........++|.|+|.+.++
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence 678888876542 111 122 11123468999999977666
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.049 Score=45.21 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=67.4
Q ss_pred EEEEEcC----C-----CcEEEEEccCCeeEEEecCCCCCCe-EEEEEecCCCEEEEEeCC-----CcEEEEeCCCCeEE
Q 036605 44 LLALGTS----N-----GDILAVDVLTGEMKWKSTGRHPGGL-AGLAFAKKGRSLHVVGTN-----GMASEMKSEMGEVI 108 (340)
Q Consensus 44 ~l~~g~~----d-----g~i~i~d~~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~ 108 (340)
+++.|+. + ..+.+||..+.+... +........ .+++.. +++.++.|+.+ ..+.+||+.+.+-.
T Consensus 73 lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 150 (308)
T 1zgk_A 73 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP-CAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWH 150 (308)
T ss_dssp EEEECCEEEETTEEEECCCEEEEETTTTEEEE-CCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEE
T ss_pred EEEECCCcCCCCCCeecceEEEECCCCCeEeE-CCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEe
Confidence 6777665 2 468899988876432 221011111 122222 56666666543 46889998876533
Q ss_pred EE--eecCCCCeeEEEEccCCCEEEEec-------CcEEEEECCCCceeE--EeecCCCCeEEEEECCCCCEEEEEEcC-
Q 036605 109 RE--FKASEKPISSSAFLCEEKIFALAS-------SEVRILSLENGEEVL--KFSDDVGPLQYVSASDGAKIIITAGYG- 176 (340)
Q Consensus 109 ~~--~~~~~~~i~~l~~~~~~~~l~~~~-------~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~~- 176 (340)
.. +...... .+++.. ++++++.++ .++.+||+.+.+-.. .+.........+.+ ++..++.++..
T Consensus 151 ~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 226 (308)
T 1zgk_A 151 LVAPMLTRRIG-VGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDG 226 (308)
T ss_dssp ECCCCSSCCBS-CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred ECCCCCccccc-eEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCC
Confidence 22 1111111 122222 555555543 238999998764321 11111112222333 55566665552
Q ss_pred ---CCeEEEEEc
Q 036605 177 ---EKHLQVWRC 185 (340)
Q Consensus 177 ---d~~i~iwd~ 185 (340)
-..+.+||+
T Consensus 227 ~~~~~~v~~yd~ 238 (308)
T 1zgk_A 227 QDQLNSVERYDV 238 (308)
T ss_dssp SSBCCCEEEEET
T ss_pred CCccceEEEEeC
Confidence 145788887
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0069 Score=51.00 Aligned_cols=192 Identities=13% Similarity=0.120 Sum_probs=100.2
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEe--cCCCEEEEE--eCCCcEEEEeCCCCeEEEEeec----CC
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFA--KKGRSLHVV--GTNGMASEMKSEMGEVIREFKA----SE 115 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~--~~~~~l~s~--~~dg~i~~wd~~~~~~~~~~~~----~~ 115 (340)
++++++.||.|+-+|..+|+..+++......++....-. +.+..++.+ ..||.|..++..+|.....+.. ..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 699999999999999999999999975211222221100 112244444 5899999999998866554432 11
Q ss_pred CCeeE---EEE------ccCCCEEEE--ecCcEEEEECCCCceeEEeecCC--CC-----eEEEEEC-----CCCCEEEE
Q 036605 116 KPISS---SAF------LCEEKIFAL--ASSEVRILSLENGEEVLKFSDDV--GP-----LQYVSAS-----DGAKIIIT 172 (340)
Q Consensus 116 ~~i~~---l~~------~~~~~~l~~--~~~~i~i~d~~~~~~~~~~~~~~--~~-----v~~~~~s-----~~~~~l~s 172 (340)
.++.. ..+ +. +..+++ .++.+...|+.+|+.+..+.... .. ..+.... ..+..++.
T Consensus 92 SP~~~~~~pvv~~~~~~~~-~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVE-DEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp CSEEEECC----------C-CEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred cccccCCCceeeccccccc-CCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 22211 001 12 334444 34449999999999988775321 10 0111110 12345666
Q ss_pred EEcCCCeEEEEEccCCCCCccCCceeeecCCC-eeeeeecCC-CCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 173 AGYGEKHLQVWRCDISSKTVNKGPALSMRHSP-VAIDCKNSP-NGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 173 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+.. +..+.+.+- +++ .-...+...... ....+...+ .+.++.+ +.++.||.|+-+|..++..+-
T Consensus 171 g~~-~y~v~~~~~---sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKT-IFELGIHSY---DGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEE-EEECEECCT---TSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecc-eEEEEEECC---CCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 555 566666551 232 111111100000 000000000 0234555 457889999999988876554
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.066 Score=44.18 Aligned_cols=137 Identities=11% Similarity=0.062 Sum_probs=68.3
Q ss_pred EEEEEc-CC-----CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCe---EEE
Q 036605 44 LLALGT-SN-----GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN-----GMASEMKSEMGE---VIR 109 (340)
Q Consensus 44 ~l~~g~-~d-----g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----g~i~~wd~~~~~---~~~ 109 (340)
+++.|+ .+ ..+.+||+.+.+... +...........+...++..++.|+.+ ..+.+||+.+.+ -..
T Consensus 17 i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~ 95 (301)
T 2vpj_A 17 LLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS 95 (301)
T ss_dssp EEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE
T ss_pred EEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE
Confidence 666776 33 478999998876432 221011111111122356666666654 468899988765 222
Q ss_pred E--eecCCCCeeEEEEccCCCEEEEecC-------cEEEEECCCCceeE--EeecCCCCeEEEEECCCCCEEEEEEcC--
Q 036605 110 E--FKASEKPISSSAFLCEEKIFALASS-------EVRILSLENGEEVL--KFSDDVGPLQYVSASDGAKIIITAGYG-- 176 (340)
Q Consensus 110 ~--~~~~~~~i~~l~~~~~~~~l~~~~~-------~i~i~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~~-- 176 (340)
. +...... .+++. .++++++.++. ++.+||+.+.+-.. .+.........+.+ +++.++.++..
T Consensus 96 ~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 171 (301)
T 2vpj_A 96 VAPMNVRRGL-AGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGL 171 (301)
T ss_dssp ECCCSSCCBS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred CCCCCCCccc-eeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCC
Confidence 1 2111111 22222 25555555432 38999988764332 12111112222222 55566665542
Q ss_pred --CCeEEEEEc
Q 036605 177 --EKHLQVWRC 185 (340)
Q Consensus 177 --d~~i~iwd~ 185 (340)
-..+.+||+
T Consensus 172 ~~~~~~~~~d~ 182 (301)
T 2vpj_A 172 NILNSVEKYDP 182 (301)
T ss_dssp CBCCCEEEEET
T ss_pred cccceEEEEeC
Confidence 245778887
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.041 Score=42.95 Aligned_cols=144 Identities=11% Similarity=0.043 Sum_probs=83.5
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe------eEEEecC-CCCCCeEEEEEecCCCEEEEEeCCC
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE------MKWKSTG-RHPGGLAGLAFAKKGRSLHVVGTNG 95 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~------~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~dg 95 (340)
.+++++|+|++. +.++ .+|.++-.+..+.. ....+-. +-. .-.++.|.|+|.+.++ .||
T Consensus 42 ~~~~laf~P~G~---------LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG 107 (236)
T 1tl2_A 42 NFKFLFLSPGGE---------LYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKD 107 (236)
T ss_dssp TCSEEEECTTSC---------EEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETT
T ss_pred cceeEEECCCcc---------EEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCC
Confidence 667999999998 6666 78877777654421 1111211 011 1478899999876666 569
Q ss_pred cEEEEeCCCCeEE------EEe-ecCCCCeeEEEEccCCCEEEEecCcEEEEECCCCce------eEEee-cCCCCeEEE
Q 036605 96 MASEMKSEMGEVI------REF-KASEKPISSSAFLCEEKIFALASSEVRILSLENGEE------VLKFS-DDVGPLQYV 161 (340)
Q Consensus 96 ~i~~wd~~~~~~~------~~~-~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~------~~~~~-~~~~~v~~~ 161 (340)
.|.-++..+...- ..+ ...=..+..|.+.|+|.+.++.++.++-....++.. ...+. ..-..-+.+
T Consensus 108 ~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l 187 (236)
T 1tl2_A 108 KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFL 187 (236)
T ss_dssp EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEE
T ss_pred EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEeCCcEEecCCCCCCCcccccccceeccCCcceEEEE
Confidence 9998886442110 011 111235789999999999888866654332221110 01111 222344557
Q ss_pred EECCCCCEEEEEEcCCCeEEEEEc
Q 036605 162 SASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 162 ~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
.|.+++....+. ++ ++|..
T Consensus 188 ~f~~~G~l~~v~---~g--~~Y~~ 206 (236)
T 1tl2_A 188 FFSSVGTLFGVQ---GG--KFYED 206 (236)
T ss_dssp EECTTSCEEEEE---TT--EEEEE
T ss_pred EECCCCcEEEEe---CC--eEEec
Confidence 789998766653 45 45554
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.80 E-value=0.2 Score=49.64 Aligned_cols=176 Identities=11% Similarity=0.062 Sum_probs=98.9
Q ss_pred cEEEEEccCCeeEEEecCCCCCCeEEEEE---ecC-CCEEEEEe----------CCCcEEEEeCCCCeEEEEe-ecCCCC
Q 036605 53 DILAVDVLTGEMKWKSTGRHPGGLAGLAF---AKK-GRSLHVVG----------TNGMASEMKSEMGEVIREF-KASEKP 117 (340)
Q Consensus 53 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~---~~~-~~~l~s~~----------~dg~i~~wd~~~~~~~~~~-~~~~~~ 117 (340)
.|+++|..+.+.+..+.-.....+.+++. ..+ ..+|+.|. ..|.|.+|++..++..... +..+++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 46777777777665554323345555553 222 35777765 2478999998755432221 123567
Q ss_pred eeEEEEccCCCEEEEecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCce
Q 036605 118 ISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA 197 (340)
Q Consensus 118 i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~ 197 (340)
+++++-- +|++++..+..|++|++...+.++.-..+-..+..+.....+.+++.+.. -..|.++.++....+. . .
T Consensus 888 v~al~~~-~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~-~~Sv~~~~y~~~~~~L-~--~ 962 (1158)
T 3ei3_A 888 VYSMVEF-NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDL-MRSVLLLAYKPMEGNF-E--E 962 (1158)
T ss_dssp EEEEEEE-TTEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEES-SBCEEEEEEETTTTEE-E--E
T ss_pred CEEEeee-CCEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEh-hheEEEEEEEcCCCeE-E--E
Confidence 8887754 46777778888999999876544411111112332233234668888666 6667776664222111 1 1
Q ss_pred eeec-CCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 198 LSMR-HSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 198 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
+.-. .+.++.++ .+ -+...++.+..+|.+.++....
T Consensus 963 ~a~D~~~~~vta~--~~--ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 963 IARDFNPNWMSAV--EI--LDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEECCSCBCEEEE--EE--EETTEEEEEETTSEEEEEEECT
T ss_pred EEeecccccEEEE--EE--EccCcEEEEcCCCcEEEEecCC
Confidence 1111 22233333 22 1234788899999999998765
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.14 Score=44.19 Aligned_cols=102 Identities=8% Similarity=0.124 Sum_probs=66.7
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC----CCCeeEEEEccCCCEEEE-ecCcEEEEECCCCc-----------
Q 036605 83 KKGRSLHVVGTNGMASEMKSEMGEVIREFKAS----EKPISSSAFLCEEKIFAL-ASSEVRILSLENGE----------- 146 (340)
Q Consensus 83 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----~~~i~~l~~~~~~~~l~~-~~~~i~i~d~~~~~----------- 146 (340)
.+|..++.+ .++.|+.-++......+.++.. -..+..+..+|+|.+|+. +..+|.|..+..+.
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 355555553 3356666666643333334332 235788999999999987 55559988886321
Q ss_pred -eeEEeec------CCCCeEEEEECCCC---CEEEEEEcCCCeEEEEEcc
Q 036605 147 -EVLKFSD------DVGPLQYVSASDGA---KIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 147 -~~~~~~~------~~~~v~~~~~s~~~---~~l~s~~~~d~~i~iwd~~ 186 (340)
..+.+.- ...+|..+.|+|-+ ..|++-.. |+.|++||+.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLts-D~~Ir~yDl~ 157 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKE-DDTITMFDIL 157 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEET-TSCEEEEETT
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEec-CCEEEEEEcc
Confidence 1123322 24679999999864 46777666 9999999995
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.14 Score=42.28 Aligned_cols=100 Identities=9% Similarity=-0.070 Sum_probs=52.9
Q ss_pred EEEEEcC--CCcEEEEEccCCeeEEEecCCCCCCe-EEEEEecCCCEEEEEeCC----CcEEEEeCCCCeEEEEeecCCC
Q 036605 44 LLALGTS--NGDILAVDVLTGEMKWKSTGRHPGGL-AGLAFAKKGRSLHVVGTN----GMASEMKSEMGEVIREFKASEK 116 (340)
Q Consensus 44 ~l~~g~~--dg~i~i~d~~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~~ 116 (340)
+++.|+. ...+.+||..+++... +........ .+++. -++..++.|+.+ ..+.+||+.+.+-...-.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 5556654 3679999998886442 221011111 12222 256666666654 5688999888753322111111
Q ss_pred Ce-eEEEEccCCCEEEEecC--------cEEEEECCCCc
Q 036605 117 PI-SSSAFLCEEKIFALASS--------EVRILSLENGE 146 (340)
Q Consensus 117 ~i-~~l~~~~~~~~l~~~~~--------~i~i~d~~~~~ 146 (340)
.. .+++ .-++++++.++. ++.+||+.+.+
T Consensus 92 r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 92 RDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp CBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred ccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 11 1222 225666666542 28999998874
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.14 Score=42.13 Aligned_cols=137 Identities=11% Similarity=0.155 Sum_probs=66.8
Q ss_pred EEEEEcCC----CcEEEEEccCCeeEEEecCCCCCCe-EEEEEecCCCEEEEEeCC-----CcEEEEeCCCCeEEEEeec
Q 036605 44 LLALGTSN----GDILAVDVLTGEMKWKSTGRHPGGL-AGLAFAKKGRSLHVVGTN-----GMASEMKSEMGEVIREFKA 113 (340)
Q Consensus 44 ~l~~g~~d----g~i~i~d~~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~ 113 (340)
+++.|+.+ ..+.+||+.+.+... +........ .+++.. ++..++.|+.+ ..+.+||+.+.+-...-..
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 66667654 468899998876432 222011111 122222 56666666644 3588999887653322111
Q ss_pred CCCC-eeEEEEccCCCEEEEecC-------cEEEEECCCCceeEE--eecCCCCeEEEEECCCCCEEEEEEcC------C
Q 036605 114 SEKP-ISSSAFLCEEKIFALASS-------EVRILSLENGEEVLK--FSDDVGPLQYVSASDGAKIIITAGYG------E 177 (340)
Q Consensus 114 ~~~~-i~~l~~~~~~~~l~~~~~-------~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~~------d 177 (340)
.... -.+++. -++.+++.++. ++.+||+.+.+-... +.........+.+ +++.++.++.. -
T Consensus 96 p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 172 (302)
T 2xn4_A 96 RDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCL 172 (302)
T ss_dssp SSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEEC
T ss_pred CccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccc
Confidence 1111 122222 24555555442 388999887643221 1111111122222 45555555441 1
Q ss_pred CeEEEEEc
Q 036605 178 KHLQVWRC 185 (340)
Q Consensus 178 ~~i~iwd~ 185 (340)
..+.+||+
T Consensus 173 ~~~~~yd~ 180 (302)
T 2xn4_A 173 STVECYNA 180 (302)
T ss_dssp CCEEEEET
T ss_pred cEEEEEeC
Confidence 34778887
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.22 Score=41.21 Aligned_cols=136 Identities=10% Similarity=0.015 Sum_probs=67.8
Q ss_pred EEEEEcCC----CcEEEEEccCCeeEEEecCCCCCCe-EEEEEecCCCEEEEEeC----C-----CcEEEEeCCCCeEEE
Q 036605 44 LLALGTSN----GDILAVDVLTGEMKWKSTGRHPGGL-AGLAFAKKGRSLHVVGT----N-----GMASEMKSEMGEVIR 109 (340)
Q Consensus 44 ~l~~g~~d----g~i~i~d~~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~----d-----g~i~~wd~~~~~~~~ 109 (340)
+++.|+.+ ..+.+||..+.+... +........ .+++.. ++..++.|+. + ..+.+||+.+.+-..
T Consensus 27 i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~ 104 (308)
T 1zgk_A 27 IYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP 104 (308)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE
T ss_pred EEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeE
Confidence 67777642 478999998876432 221011111 122222 5556666654 2 468899988765322
Q ss_pred E--eecCCCCeeEEEEccCCCEEEEec-------CcEEEEECCCCceeE--EeecCCCCeEEEEECCCCCEEEEEEcC--
Q 036605 110 E--FKASEKPISSSAFLCEEKIFALAS-------SEVRILSLENGEEVL--KFSDDVGPLQYVSASDGAKIIITAGYG-- 176 (340)
Q Consensus 110 ~--~~~~~~~i~~l~~~~~~~~l~~~~-------~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~~-- 176 (340)
. +...... .+++. -++++++.++ .++.+||+.+.+-.. .+.........+.+ ++..++.++..
T Consensus 105 ~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 180 (308)
T 1zgk_A 105 CAPMSVPRNR-IGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGT 180 (308)
T ss_dssp CCCCSSCCBT-CEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred CCCCCcCccc-cEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCC
Confidence 2 1111111 22222 2566665544 238999998764321 11111122222333 55566665542
Q ss_pred --CCeEEEEEc
Q 036605 177 --EKHLQVWRC 185 (340)
Q Consensus 177 --d~~i~iwd~ 185 (340)
-..+.+||+
T Consensus 181 ~~~~~~~~yd~ 191 (308)
T 1zgk_A 181 NRLNSAECYYP 191 (308)
T ss_dssp CBCCCEEEEET
T ss_pred CcCceEEEEeC
Confidence 145788887
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.4 Score=40.47 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=83.4
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE--EEec---CCCCCCeEEEEEecC---CCEEEEE-
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK--WKST---GRHPGGLAGLAFAKK---GRSLHVV- 91 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~~---~~h~~~v~~v~~~~~---~~~l~s~- 91 (340)
-...+.|+|.|+|+ ++++--..|.|++++..+++.. ..+. ....+....|+|+|+ +..|+..
T Consensus 31 L~~P~~ia~~pdG~---------llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 31 LNSPWGLAPLPGGD---------LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp CSSEEEEEECTTSC---------EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred CCCceEEEEcCCCc---------EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 34668999999999 6666555899999987666532 2221 113557899999995 4556553
Q ss_pred --eCCCcEEEEeCCCC----------eEEE-Eee-cCCCCeeEEEEccCCCEEEEec---------------CcEEEEEC
Q 036605 92 --GTNGMASEMKSEMG----------EVIR-EFK-ASEKPISSSAFLCEEKIFALAS---------------SEVRILSL 142 (340)
Q Consensus 92 --~~dg~i~~wd~~~~----------~~~~-~~~-~~~~~i~~l~~~~~~~~l~~~~---------------~~i~i~d~ 142 (340)
..+..|.-|.+..+ +.+. .+. ........|+|.|||.+.++.+ +.|.-++.
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence 24556777766541 1111 121 1122346799999998777732 12444444
Q ss_pred CCCc-------eeEEe-ecCCCCeEEEEECCCCCEEEE
Q 036605 143 ENGE-------EVLKF-SDDVGPLQYVSASDGAKIIIT 172 (340)
Q Consensus 143 ~~~~-------~~~~~-~~~~~~v~~~~~s~~~~~l~s 172 (340)
...- ....+ .+|.+ ...++|+|+|...++
T Consensus 182 dG~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~ 218 (347)
T 3das_A 182 DGEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFAS 218 (347)
T ss_dssp TSSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEE
T ss_pred CCCccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEE
Confidence 3210 01112 34444 467899998865555
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.15 Score=43.31 Aligned_cols=101 Identities=11% Similarity=0.040 Sum_probs=61.5
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEec------CCCCCCeEEEEEecC---CCEEEEEe
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKST------GRHPGGLAGLAFAKK---GRSLHVVG 92 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~------~~h~~~v~~v~~~~~---~~~l~s~~ 92 (340)
.....|+|.|+++ .|+++...|.|++++. .+.....+. ....+....|+|+|+ +..|+.+.
T Consensus 18 ~~P~~i~~~pdG~---------~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 18 DHPWALAFLPDNH---------GMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp SSEEEEEECSTTC---------CEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCcEEEEEcCCCC---------EEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 3567899999997 5777778899999985 343221111 112346789999996 56666553
Q ss_pred C--------CCcEEEEeCCCC-----eEEEEeec------CCCCeeEEEEccCCCEEEE
Q 036605 93 T--------NGMASEMKSEMG-----EVIREFKA------SEKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 93 ~--------dg~i~~wd~~~~-----~~~~~~~~------~~~~i~~l~~~~~~~~l~~ 132 (340)
. ...|..|++..+ .....+.. .......|+|.|||.++++
T Consensus 88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~ 146 (353)
T 2g8s_A 88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIA 146 (353)
T ss_dssp EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEE
T ss_pred eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEE
Confidence 2 235777766533 11111221 1122467999999976665
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.42 Score=40.51 Aligned_cols=121 Identities=4% Similarity=-0.056 Sum_probs=75.0
Q ss_pred CCcEEEEEccCC--e--eEEEecCCCCCCeEEEEEecCCCEEEEEe-----------------CCCcEEEEeCCCCeEEE
Q 036605 51 NGDILAVDVLTG--E--MKWKSTGRHPGGLAGLAFAKKGRSLHVVG-----------------TNGMASEMKSEMGEVIR 109 (340)
Q Consensus 51 dg~i~i~d~~~~--~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-----------------~dg~i~~wd~~~~~~~~ 109 (340)
+..|.+|++..+ . .+..+.+..-...+.+.+.++|...++.. ..|.|..+|.. +. .
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~ 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-R 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-E
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-E
Confidence 567778776653 2 23344442334679999999998766643 12556666653 22 2
Q ss_pred EeecCCCCeeEEEEccCCCEEEEec---CcEEEEECCC-Cce--eEEeecCCCCeEEEEECC-CCCEEEEEEc
Q 036605 110 EFKASEKPISSSAFLCEEKIFALAS---SEVRILSLEN-GEE--VLKFSDDVGPLQYVSASD-GAKIIITAGY 175 (340)
Q Consensus 110 ~~~~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~s~~~ 175 (340)
.+...-...+.++|+||++.++.++ +.|+.|++.. ++. ...+ ...+....+++.+ +|.+.+++..
T Consensus 215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 2222234568999999999887754 3499999863 322 1233 2345667889998 5877766554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.36 Score=48.31 Aligned_cols=188 Identities=11% Similarity=0.118 Sum_probs=111.1
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC-CeEEEEeecC----CCCe
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEM-GEVIREFKAS----EKPI 118 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~----~~~i 118 (340)
.+|.-. ..++.|||+++...+..+. ....|..=.|-.+. .|+..+ +..|..|++.. ..++..|..| ...|
T Consensus 79 iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QI 153 (1630)
T 1xi4_A 79 VIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQI 153 (1630)
T ss_pred eEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCee
Confidence 666664 7799999999887666655 34567777776433 444433 45899999964 2344444444 3456
Q ss_pred eEEEEccCCCEEEEec---------CcEEEEECCCCceeEEeecCCCCeEEEEEC--CCCCEEEEEEcC---CCeEEEEE
Q 036605 119 SSSAFLCEEKIFALAS---------SEVRILSLENGEEVLKFSDDVGPLQYVSAS--DGAKIIITAGYG---EKHLQVWR 184 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~~---------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~s~~~~---d~~i~iwd 184 (340)
-....+++.++++..| |.+.+|..+.+ ..+.+.+|.+.-..+.+. +....+++-+.. .+.++|-+
T Consensus 154 inY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~E 232 (1630)
T 1xi4_A 154 INYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE 232 (1630)
T ss_pred EEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEe
Confidence 6677888899886521 23788887655 335556666554444442 222233332331 37899999
Q ss_pred ccCC-CCC-ccCCceeeecCC-------CeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 185 CDIS-SKT-VNKGPALSMRHS-------PVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 185 ~~~~-~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+... .+. ....-...+..+ |..+.+ ++....+...+.-|.|++||+.++..+.
T Consensus 233 i~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v-----s~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 233 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-----SEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred cCCCccCCCCCccccccccCCcccccCcceEEEe-----ccccCEEEEEecCceEEEEecccchhhh
Confidence 8432 111 110001111111 222223 5666778888999999999999987665
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.69 Score=40.73 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=62.7
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE--EEecCC-----CCCCeEEEEEecC---CCEEEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK--WKSTGR-----HPGGLAGLAFAKK---GRSLHVV 91 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~~~~-----h~~~v~~v~~~~~---~~~l~s~ 91 (340)
...+.|+|.|+|+ ++++-...+.|++++..+++.. ..+... ..+....|+|+|+ +..|+.+
T Consensus 27 ~~P~~~a~~pdG~---------l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 27 NKPHALLWGPDNQ---------IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp SSEEEEEECTTSC---------EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEcCCCc---------EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 3567999999999 6665544457998886655432 223221 2456789999996 6666665
Q ss_pred eC-------------CCcEEEEeCCCC--e-----EEEE-eec-CCCCeeEEEEccCCCEEEE
Q 036605 92 GT-------------NGMASEMKSEMG--E-----VIRE-FKA-SEKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 92 ~~-------------dg~i~~wd~~~~--~-----~~~~-~~~-~~~~i~~l~~~~~~~~l~~ 132 (340)
.. ...|..|+...+ . .+.. +.. .......|+|.|||.+.++
T Consensus 98 ~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred EeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence 42 235666665322 1 1111 221 1234689999999987776
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.43 Score=40.33 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=26.7
Q ss_pred EEEEEcC-C---------CcEEEEEccCCeeEEEecCCC-CCCeEEEEEecCCCEEEEEeCC
Q 036605 44 LLALGTS-N---------GDILAVDVLTGEMKWKSTGRH-PGGLAGLAFAKKGRSLHVVGTN 94 (340)
Q Consensus 44 ~l~~g~~-d---------g~i~i~d~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~~~d 94 (340)
+++.|+. + ..+.+||+.+.+....-.. . .......+...+++.++.|+.+
T Consensus 68 lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 68 LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSH-APMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCC-CSSCCSSEEEEEETTEEEEEECCC
T ss_pred EEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCC-CCcccccceEEEECCEEEEEeCcC
Confidence 6777665 2 4789999988764432111 1 1111121222456677777754
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.32 Score=37.99 Aligned_cols=131 Identities=7% Similarity=-0.026 Sum_probs=74.5
Q ss_pred EEEEEcCCCcEEEEEccCCe------eEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE------EEEe
Q 036605 44 LLALGTSNGDILAVDVLTGE------MKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEV------IREF 111 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~------~~~~ 111 (340)
+|++..+| +++.=....+. ...++-...-..+..++|+|+|. |+.. .+|.+...+..++.. -..+
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCcccccccccEe
Confidence 56666666 65554433332 11122111124678999999887 5555 778888877755211 1111
Q ss_pred e-cCCCCeeEEEEccCCCEEEEecCcEEEEECCCCcee------EEeec-CCCCeEEEEECCCCCEEEEEEcCCCeE
Q 036605 112 K-ASEKPISSSAFLCEEKIFALASSEVRILSLENGEEV------LKFSD-DVGPLQYVSASDGAKIIITAGYGEKHL 180 (340)
Q Consensus 112 ~-~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~------~~~~~-~~~~v~~~~~s~~~~~l~s~~~~d~~i 180 (340)
- ..-....++.|.|+|.+.++.++.|+-++-.+...- ..+-. --..+..+.|.|+|...+.. |+.+
T Consensus 83 G~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~---dg~l 156 (236)
T 1tl2_A 83 GNGGWNQFQFLFFDPNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH---GQQF 156 (236)
T ss_dssp ECSCGGGCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE---TTEE
T ss_pred cccccccceEEEECCCCCEEEeCCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe---CCcE
Confidence 0 011124789999999999888887877765332111 11111 11457899999999655553 5554
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.77 Score=37.98 Aligned_cols=135 Identities=10% Similarity=0.018 Sum_probs=67.9
Q ss_pred EEEEEcCCCcEEEEEccCCeeEE-EecCCCCCCeEEEEEecCCCEEEEEeC----C-------CcEEEEeCCCCeEEEEe
Q 036605 44 LLALGTSNGDILAVDVLTGEMKW-KSTGRHPGGLAGLAFAKKGRSLHVVGT----N-------GMASEMKSEMGEVIREF 111 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~~~----d-------g~i~~wd~~~~~~~~~~ 111 (340)
+++.|+ ..+.+||..+++... .+.. ........+...++..++.|+. + ..+.+||+.+.+-. .+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSS-QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCC-CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-EC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCC-CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-EC
Confidence 556666 579999999887443 1111 1123333333446777777773 1 12778898876532 22
Q ss_pred ecCCCC-e-eEEEEccCCCEEEEec----------CcEEEEECCCCceeE--EeecCCCCeEEEEECCCCCEEEEEEcCC
Q 036605 112 KASEKP-I-SSSAFLCEEKIFALAS----------SEVRILSLENGEEVL--KFSDDVGPLQYVSASDGAKIIITAGYGE 177 (340)
Q Consensus 112 ~~~~~~-i-~~l~~~~~~~~l~~~~----------~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~~d 177 (340)
.....+ . .+++.. ++.+++.++ .++.+||+.+.+-.. .+.........+. -+++.++.++..+
T Consensus 83 ~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~ 159 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGS 159 (315)
T ss_dssp CCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCT
T ss_pred CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCC
Confidence 111111 1 122222 455555544 128999998764221 1111111112222 3455556655411
Q ss_pred -----CeEEEEEc
Q 036605 178 -----KHLQVWRC 185 (340)
Q Consensus 178 -----~~i~iwd~ 185 (340)
..+.+||.
T Consensus 160 ~~~~~~~~~~yd~ 172 (315)
T 4asc_A 160 DRKCLNKMCVYDP 172 (315)
T ss_dssp TSCBCCCEEEEET
T ss_pred CCcccceEEEEeC
Confidence 45788887
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.63 Score=39.41 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=60.3
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEE--EEee---cCCCCeeEEEEccC---CCEEEEec--------CcE
Q 036605 74 GGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVI--REFK---ASEKPISSSAFLCE---EKIFALAS--------SEV 137 (340)
Q Consensus 74 ~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~--~~~~---~~~~~i~~l~~~~~---~~~l~~~~--------~~i 137 (340)
.....++|.|+|+ |+.+..+|.|.+++ +++.. ..+. ........|+++|+ +..|+++. ..|
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3568999999998 45557779999998 44422 2121 12346789999998 44544322 347
Q ss_pred EEEECCCCc-----ee-EEee---cCCCCeEEEEECCCCCEEEEEE
Q 036605 138 RILSLENGE-----EV-LKFS---DDVGPLQYVSASDGAKIIITAG 174 (340)
Q Consensus 138 ~i~d~~~~~-----~~-~~~~---~~~~~v~~~~~s~~~~~l~s~~ 174 (340)
..|++..+. .+ ..+. ........++|.|||...++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 788876431 11 1132 1112346899999996655543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.22 E-value=1.4 Score=38.21 Aligned_cols=114 Identities=7% Similarity=0.013 Sum_probs=68.8
Q ss_pred ccCCCEEE-EecCcEEEEECCCCceeEEeecC----CCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCC-CCc-----
Q 036605 124 LCEEKIFA-LASSEVRILSLENGEEVLKFSDD----VGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISS-KTV----- 192 (340)
Q Consensus 124 ~~~~~~l~-~~~~~i~i~d~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~-~~~----- 192 (340)
..+|..++ ..++.||.-++......+.+... -..+..+..+|+|.+|+..+ +..|.|-.++... ...
T Consensus 29 ~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--CCeEEEEEecCccccCcccccc
Confidence 34454444 45556888887754333344332 23688899999999998854 5799999985211 100
Q ss_pred --cCCceeeecC-----CCeeeeeecCC--CCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 036605 193 --NKGPALSMRH-----SPVAIDCKNSP--NGEDGTVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 193 --~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
.....+.++. ...+..+ .| .+..+..|++-..|+.|++||+......
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qV--lWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~ 162 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKV--LFHPKSYRDSCIVVLKEDDTITMFDILNSQEK 162 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEE--EECTTBGGGCEEEEEETTSCEEEEETTCTTSC
T ss_pred cccceeEEEcCCcccCCCCceeEE--EeccccCCCCeEEEEecCCEEEEEEcccCCCC
Confidence 1111222221 2233444 34 1445678999999999999999874433
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.08 E-value=1.1 Score=37.07 Aligned_cols=99 Identities=11% Similarity=0.118 Sum_probs=50.7
Q ss_pred EEEEEcCC-------CcEEEEEccCCeeEEEecCCCCCCe--EEEEEecCCCEEEEEeC------CCcEEEEeCCCCeEE
Q 036605 44 LLALGTSN-------GDILAVDVLTGEMKWKSTGRHPGGL--AGLAFAKKGRSLHVVGT------NGMASEMKSEMGEVI 108 (340)
Q Consensus 44 ~l~~g~~d-------g~i~i~d~~~~~~~~~~~~~h~~~v--~~v~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~ 108 (340)
+++.|+.+ ..+.+||..+.+.... .. ...+. .+++. .+++.++.|+. -..+.+||+.+.+-.
T Consensus 112 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 112 IYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KN-LPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp EEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CC-CSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred EEEEcCccCCCCcccceEEEEeCCCCCEeEC-CC-CCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 66666643 3578899888764432 11 11111 11222 35656666653 235899999877533
Q ss_pred EEeecCCC-CeeEEEEccCCCEEEEecC-------cEEEEECCCCc
Q 036605 109 REFKASEK-PISSSAFLCEEKIFALASS-------EVRILSLENGE 146 (340)
Q Consensus 109 ~~~~~~~~-~i~~l~~~~~~~~l~~~~~-------~i~i~d~~~~~ 146 (340)
..-..... .-.+++. -++++++.++. ++.+||+.+.+
T Consensus 189 ~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 189 DLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred ECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 22111111 1122333 24556555442 28899988764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.01 E-value=1.3 Score=36.66 Aligned_cols=136 Identities=10% Similarity=0.105 Sum_probs=81.6
Q ss_pred EEEeeccccccccccCceEEEEEc----CCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC-CCcEEEE
Q 036605 26 CLACGFVGKKRRKERGTLLLALGT----SNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT-NGMASEM 100 (340)
Q Consensus 26 ~l~~sp~~~~~~~~~~~~~l~~g~----~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~~w 100 (340)
+..|++++. .|+-.. .+..|+..++.... ..++.. +.. .+|+++++.|+-.+. ...|.+.
T Consensus 108 ~~~~s~~g~---------~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~ 172 (302)
T 3s25_A 108 CIYASLIGN---------YIYYLHYDTQTATSLYRIRIDGEE-KKKIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRY 172 (302)
T ss_dssp EEEEEEETT---------EEEEEEESSSSCEEEEEEETTSCC-CEEEES-SCC----CCSEEETTEEEEECTTTCCEEEE
T ss_pred ccEEEEeCC---------EEEEEeecCCCCceEEEEECCCCC-eEEEeC-CCc----eEeeEECCEEEEEeCCCceEEEE
Confidence 357888887 566554 34566666766443 444544 332 456778888887765 5789999
Q ss_pred eCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC----cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcC
Q 036605 101 KSEMGEVIREFKASEKPISSSAFLCEEKIFALASS----EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYG 176 (340)
Q Consensus 101 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 176 (340)
++..+.....+. .... ..+.|++.+|+-.+. .|..-++.... ...+.. ..+ ..|+|++.+|+.+...
T Consensus 173 ~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~ 243 (302)
T 3s25_A 173 DTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGG 243 (302)
T ss_dssp ETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECS
T ss_pred ECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECC
Confidence 988776544333 2222 346698888866332 37666776553 333332 233 4478889898875442
Q ss_pred -CCeEEEEEc
Q 036605 177 -EKHLQVWRC 185 (340)
Q Consensus 177 -d~~i~iwd~ 185 (340)
...|..-++
T Consensus 244 ~~~~i~~~~~ 253 (302)
T 3s25_A 244 DNPALCVVKN 253 (302)
T ss_dssp SSCEEEEEET
T ss_pred CCcEEEEEEC
Confidence 345555555
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.91 E-value=2.6 Score=39.76 Aligned_cols=146 Identities=13% Similarity=0.016 Sum_probs=89.4
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMK 101 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd 101 (340)
..|.++.-..++. |.+|+.+| +..||..+.+....... ....|.++.. .++ .|..++.+ -+..+|
T Consensus 63 ~~i~~i~~d~~g~----------lWigT~~G-l~~yd~~~~~f~~~~~~-~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~ 127 (758)
T 3ott_A 63 TRIYCGVIIDNTY----------LYMGTDNG-ILVYNYRADRYEQPETD-FPTDVRTMAL-QGD-TLWLGALN-GLYTYQ 127 (758)
T ss_dssp SCEEEEEEETTTE----------EEEEETTE-EEEEETTTTEECCCSCC-CCSCEEEEEE-ETT-EEEEEETT-EEEEEE
T ss_pred ceEEEEEEcCCCc----------EEEEeCCC-eEEEeCCCCEEECcccC-CCceEEEEEe-cCC-cEEEEcCC-cceeEe
Confidence 4688877766666 77777766 78999887653321111 2335777754 344 56666666 688899
Q ss_pred CCCCeEEEEee----cCCCCeeEEEEccCCCEEEEecCcEEEEECCCCceeEEeecC------CCCeEEEEECCCCCEEE
Q 036605 102 SEMGEVIREFK----ASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSDD------VGPLQYVSASDGAKIII 171 (340)
Q Consensus 102 ~~~~~~~~~~~----~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~ 171 (340)
..+++...... .....|.++....++.+.+...+-+..|+..+++. ..+... ...|.++....++..|.
T Consensus 128 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~~~~lW 206 (758)
T 3ott_A 128 LQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKF-EGIPLPVHSSQSNLFVNSLLEDTTRQCVW 206 (758)
T ss_dssp TTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTTTEE-EEECCCCCTTCSSCCEEEEEEETTTTEEE
T ss_pred CCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCCCce-EEecCCCccccccceeEEEEEECCCCEEE
Confidence 87765432201 12346888888888887776555588899877643 222111 12477888777666555
Q ss_pred EEEcCCCeEEEEEc
Q 036605 172 TAGYGEKHLQVWRC 185 (340)
Q Consensus 172 s~~~~d~~i~iwd~ 185 (340)
.+.. +-+..++.
T Consensus 207 igt~--~Gl~~~~~ 218 (758)
T 3ott_A 207 IGTE--GYLFQYFP 218 (758)
T ss_dssp EEEE--EEEEEEET
T ss_pred EEEC--CCCeEEcC
Confidence 4333 35667775
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.82 E-value=1.4 Score=36.33 Aligned_cols=122 Identities=7% Similarity=-0.014 Sum_probs=71.7
Q ss_pred CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe----CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCC
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG----TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEE 127 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~ 127 (340)
..|+..++..++.. .+.. . . +..|+++++.|+... ....|...++.... ...+..+.. .++++++
T Consensus 88 ~~Iy~i~~dg~~~~-~l~~-~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g 156 (302)
T 3s25_A 88 NSLCRIKRNGHGST-VLDP-D--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSD 156 (302)
T ss_dssp EEEEEEETTSCCCE-EEEC-S--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEET
T ss_pred CeEEEEeCCCCcce-Eeec-C--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEEC
Confidence 46777787766533 3332 1 2 236778899888776 34567777776443 344444332 4567888
Q ss_pred CEEEEec---CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCC
Q 036605 128 KIFALAS---SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISS 189 (340)
Q Consensus 128 ~~l~~~~---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~ 189 (340)
+.|+-.+ ..|...++..+.....+. +... ..+.|++.+|+-....++ -+|+.+++..
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~-~~I~~~~ldG 216 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRD-NAIVHVNINN 216 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGT-TEEEEECSSS
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCC-cEEEEEECCC
Confidence 8886543 338888887765433332 2222 345688999888766333 3455443344
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=1.7 Score=36.81 Aligned_cols=155 Identities=10% Similarity=0.003 Sum_probs=80.5
Q ss_pred CCeEEEEeecc----ccccccccCceEEEEEcC---C----CcEEEEEccCC-------eeE-EEecCCCCCCeEEEEEe
Q 036605 22 VSYSCLACGFV----GKKRRKERGTLLLALGTS---N----GDILAVDVLTG-------EMK-WKSTGRHPGGLAGLAFA 82 (340)
Q Consensus 22 ~~v~~l~~sp~----~~~~~~~~~~~~l~~g~~---d----g~i~i~d~~~~-------~~~-~~~~~~h~~~v~~v~~~ 82 (340)
.....|+|+|+ +. ++++-+. + ..|..|+...+ +.+ ..+..........++|.
T Consensus 73 ~g~~gia~~pdf~~~g~---------lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~ 143 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSW---------VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG 143 (354)
T ss_dssp CSEEEEEECTTTTTSCE---------EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC
T ss_pred CceeeEEeCCCCCcCCE---------EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC
Confidence 45788999997 34 3333332 3 56778887654 111 11221111124679999
Q ss_pred cCCCEEEEEeC-------------CCcEEEEeCCCCe-------EEEEeecCCCCeeEEEEcc-CCCEEEEecCc-----
Q 036605 83 KKGRSLHVVGT-------------NGMASEMKSEMGE-------VIREFKASEKPISSSAFLC-EEKIFALASSE----- 136 (340)
Q Consensus 83 ~~~~~l~s~~~-------------dg~i~~wd~~~~~-------~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~~----- 136 (340)
|||.++++.+. .|.|..++....- ....+.........++|+| ++.++++-.+.
T Consensus 144 pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~de 223 (354)
T 3a9g_A 144 PDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDE 223 (354)
T ss_dssp TTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCE
T ss_pred CCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcE
Confidence 99976665432 2567777654320 0111221223357899999 67766662221
Q ss_pred EEEEECCC--------C--------ceeEEeecCCCCeEEEEEC-------CCCCEEEEEEcCCCeEEEEEcc
Q 036605 137 VRILSLEN--------G--------EEVLKFSDDVGPLQYVSAS-------DGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 137 i~i~d~~~--------~--------~~~~~~~~~~~~v~~~~~s-------~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
|.+..... + .++..+.........+.|. .+|.++++ ....+.|...++.
T Consensus 224 i~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~-~~~~~~v~~~~~~ 295 (354)
T 3a9g_A 224 VNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIA-CLRGSMLAAVNFG 295 (354)
T ss_dssp EEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEE-ETTTTEEEEEEEC
T ss_pred EEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEE-EcCCCEEEEEEEC
Confidence 44432111 0 1122231122456778883 45655544 5547788877773
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.24 E-value=1.6 Score=36.63 Aligned_cols=120 Identities=12% Similarity=0.061 Sum_probs=53.7
Q ss_pred CcEEEEEccCCeeEEEecCCCCCCe-EEEEEecCCCEEEEEeC------CCcEEEEeC--CCCeEEEEeec---CCCCee
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPGGL-AGLAFAKKGRSLHVVGT------NGMASEMKS--EMGEVIREFKA---SEKPIS 119 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~------dg~i~~wd~--~~~~~~~~~~~---~~~~i~ 119 (340)
..+.+||+.+.+....-.......- .+++.. +++.++.|+. ...+..||+ .+..- ..+.. ......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W-~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKW-NKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEE-EECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcE-EecCCCCCCccccc
Confidence 5789999988764332111011111 233332 4555555553 235777876 43322 12211 111112
Q ss_pred EEEEccCCCEEEEec------------------------CcEEEEECCCCcee--EEeecCCCCeEEEEECCCCCEEEEE
Q 036605 120 SSAFLCEEKIFALAS------------------------SEVRILSLENGEEV--LKFSDDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 120 ~l~~~~~~~~l~~~~------------------------~~i~i~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~ 173 (340)
..+...++++++.++ .++.+||+.+.+-. ..+.........+. -+++.++.+
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~G 323 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIG 323 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEe
Confidence 222334556666654 13789998876432 22222222222222 356777777
Q ss_pred Ec
Q 036605 174 GY 175 (340)
Q Consensus 174 ~~ 175 (340)
|.
T Consensus 324 G~ 325 (357)
T 2uvk_A 324 GE 325 (357)
T ss_dssp EE
T ss_pred ee
Confidence 76
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=94.16 E-value=2.6 Score=36.64 Aligned_cols=182 Identities=11% Similarity=0.158 Sum_probs=109.7
Q ss_pred EEEEEc---CCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeE
Q 036605 44 LLALGT---SNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS 120 (340)
Q Consensus 44 ~l~~g~---~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 120 (340)
++++-- .+..|.|.|+.++....+-.- .--+.-.+|..+.++.-. ...+.++|+++...+..+.-.+ .|.-
T Consensus 37 yicVrE~~~~~~~vvIiDl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~Vvf 110 (494)
T 1bpo_A 37 FICIREKVGEQAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTF 110 (494)
T ss_dssp EEEEEECCTTCCEEEEEETTSTTSCEEEEC----CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCE
T ss_pred eEEEEecCCCCCeEEEEECCCCCcceeccc----ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceE
Confidence 566543 334899999988764432221 112344578777777654 6799999999988877766544 4555
Q ss_pred EEEccCCCEEEEecCcEEEEECCCC-ceeEEeecCC----CCeEEEEECCCCCEEEEEEcC------CCeEEEEEccCCC
Q 036605 121 SAFLCEEKIFALASSEVRILSLENG-EEVLKFSDDV----GPLQYVSASDGAKIIITAGYG------EKHLQVWRCDISS 189 (340)
Q Consensus 121 l~~~~~~~~l~~~~~~i~i~d~~~~-~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~~------d~~i~iwd~~~~~ 189 (340)
-.|-.+..+-++.+..|+.|++... .+..-|.-|. ..|..-..+++.++++..|-. .|.+.+|..+ .
T Consensus 111 WkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e--r 188 (494)
T 1bpo_A 111 WKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--R 188 (494)
T ss_dssp EEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST--T
T ss_pred EEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc--c
Confidence 5666655555667777999999753 3445554443 557777779999998866542 4788899973 2
Q ss_pred CCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeC---CCcEEEEECCC
Q 036605 190 KTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAE---SGVAYSWDLKT 237 (340)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~---dg~i~vwd~~~ 237 (340)
.....+. +|......+...-.......++.+.. .++++|-++..
T Consensus 189 -~~sQ~ie---Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~ 235 (494)
T 1bpo_A 189 -KVSQPIE---GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (494)
T ss_dssp -CCEEEEC---CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSC
T ss_pred -cccchhe---eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence 2222222 44444433311111111223333333 27899999864
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=3.5 Score=38.48 Aligned_cols=142 Identities=12% Similarity=0.064 Sum_probs=75.1
Q ss_pred EEEEEcCC----CcEEEEEccCCeeEEEe-c---C-CCCCC-eEEEEEec-CCCEEEEEeCC------CcEEEEeCCCCe
Q 036605 44 LLALGTSN----GDILAVDVLTGEMKWKS-T---G-RHPGG-LAGLAFAK-KGRSLHVVGTN------GMASEMKSEMGE 106 (340)
Q Consensus 44 ~l~~g~~d----g~i~i~d~~~~~~~~~~-~---~-~h~~~-v~~v~~~~-~~~~l~s~~~d------g~i~~wd~~~~~ 106 (340)
+++.|+.+ ..+.+||..+++....- . + ..... -.+++..+ ++..++.||.+ ..+.+||+.+..
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~ 479 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTRE 479 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTE
T ss_pred EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCc
Confidence 67777643 46889999888644322 1 0 01111 12333333 56666777644 357889988754
Q ss_pred EEEE--eecCCCCeeEEEEccCCCEEEEecC----cEEEEECCCCceeEE-----eecCCCCeEEEEECCC-CCEEEEEE
Q 036605 107 VIRE--FKASEKPISSSAFLCEEKIFALASS----EVRILSLENGEEVLK-----FSDDVGPLQYVSASDG-AKIIITAG 174 (340)
Q Consensus 107 ~~~~--~~~~~~~i~~l~~~~~~~~l~~~~~----~i~i~d~~~~~~~~~-----~~~~~~~v~~~~~s~~-~~~l~s~~ 174 (340)
-... +.... .-.+.+...++++++.++. ++.+||..+..-... ..........+.+..+ ++.++.+|
T Consensus 480 W~~~~~~p~~R-~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG 558 (695)
T 2zwa_A 480 WSMIKSLSHTR-FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGG 558 (695)
T ss_dssp EEECCCCSBCC-BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECC
T ss_pred EEECCCCCCCc-ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECC
Confidence 3221 11111 1123344347777777654 599999988743211 1111122233555554 55666655
Q ss_pred cC------CCeEEEEEcc
Q 036605 175 YG------EKHLQVWRCD 186 (340)
Q Consensus 175 ~~------d~~i~iwd~~ 186 (340)
.. -..+.+||+.
T Consensus 559 ~~~~~~~~~~~v~~yd~~ 576 (695)
T 2zwa_A 559 GFMDQTTVSDKAIIFKYD 576 (695)
T ss_dssp BCTTSSCBCCEEEEEEEC
T ss_pred cCCCCCeeeCcEEEEEcc
Confidence 42 1457888873
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.66 E-value=2.3 Score=35.78 Aligned_cols=102 Identities=12% Similarity=0.116 Sum_probs=62.0
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEE--Ee----ecCCCCeeEEEEccC---CCEE-EE----ecCcEE
Q 036605 73 PGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIR--EF----KASEKPISSSAFLCE---EKIF-AL----ASSEVR 138 (340)
Q Consensus 73 ~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~----~~~~~~i~~l~~~~~---~~~l-~~----~~~~i~ 138 (340)
-.....|+|.|+|..+++--..|.|++++..++.... .+ .........|+++|+ ...| ++ ....|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 3467899999999876664448999999876665422 11 123456789999995 3344 33 122366
Q ss_pred EEECCCC----------cee-EEee-cCCCCeEEEEECCCCCEEEEEE
Q 036605 139 ILSLENG----------EEV-LKFS-DDVGPLQYVSASDGAKIIITAG 174 (340)
Q Consensus 139 i~d~~~~----------~~~-~~~~-~~~~~v~~~~~s~~~~~l~s~~ 174 (340)
-|.+..+ +.+ ..+. ........|.|.|||...++.+
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 6665541 111 1221 1112346799999997777654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=93.36 E-value=1.4 Score=39.53 Aligned_cols=108 Identities=11% Similarity=0.068 Sum_probs=66.2
Q ss_pred CeeEEEEccCCCEEEEecCc---EEEEECCCCce-------------eEEeecCCCCeEEEEECCCCCEEEEEEcCCCeE
Q 036605 117 PISSSAFLCEEKIFALASSE---VRILSLENGEE-------------VLKFSDDVGPLQYVSASDGAKIIITAGYGEKHL 180 (340)
Q Consensus 117 ~i~~l~~~~~~~~l~~~~~~---i~i~d~~~~~~-------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i 180 (340)
..+.+.++|||+++++++.- +.++|++.... ..... -.-.....+|.++| +.+++-.-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecceE
Confidence 44678899999999886543 99999874211 12222 22456789999999 677767669999
Q ss_pred EEEEccCC----CCCccCCc--eeeecCCCeeeeeecCC-CCCCCCEEEEEeC
Q 036605 181 QVWRCDIS----SKTVNKGP--ALSMRHSPVAIDCKNSP-NGEDGTVILAVAE 226 (340)
Q Consensus 181 ~iwd~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~l~~~s~ 226 (340)
.-|++... .++....+ .+.+...+......-.. ..++|.+|++...
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 99999522 12222111 12333444333331111 1688899888754
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=92.85 E-value=2.2 Score=34.80 Aligned_cols=172 Identities=8% Similarity=0.018 Sum_probs=80.5
Q ss_pred CCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEE
Q 036605 51 NGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIF 130 (340)
Q Consensus 51 dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 130 (340)
||.|+.|-......+-.-.. -...|..++.-. ...+.-. ||.|+.|-....-.+..-......|..++.......+
T Consensus 80 ~G~v~~wG~n~~Gqlg~P~~-~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~ 155 (282)
T 3qhy_B 80 DGEVIAWGGNEDGQTTVPAE-ARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA 155 (282)
T ss_dssp TTEEEEEECCTTSTTCCCGG-GSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE
T ss_pred CCEEEEeeCCCCCCCCCCcc-cCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE
Confidence 78888886443211100000 123566666543 2333334 8888888644311111111112345555554444333
Q ss_pred EEecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeee
Q 036605 131 ALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCK 210 (340)
Q Consensus 131 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (340)
++ ++.|+.|-......+..-......|..++..... .+.- . |+.|..|=.+. .++. .... .....+..+.
T Consensus 156 l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h--s~al-~-~G~v~~wG~n~-~gql-g~p~---~~~~~v~~i~ 225 (282)
T 3qhy_B 156 VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH--SLAL-K-DGKVIAWGDNR-YKQT-TVPT---EALSGVSAIA 225 (282)
T ss_dssp EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEE-E-TTEEEEEECCT-TSTT-CCCG---GGGSSCCEEE
T ss_pred EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE--EEEE-E-CCeEEEEECCC-CCCC-CCCc---ccCCCceEEE
Confidence 44 6778877654321111000112456777665443 3333 4 89999997631 1222 1111 1111233331
Q ss_pred cCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 211 NSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 211 ~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+. ..+.++.. ||.|+.|-.....++.
T Consensus 226 ~G-----~~h~~al~-~g~v~~wG~n~~gq~~ 251 (282)
T 3qhy_B 226 SG-----EWYSLALK-NGKVIAWGSSRTAPSS 251 (282)
T ss_dssp EC-----SSCEEEEE-TTEEEEESTTCCCCGG
T ss_pred cC-----CCEEEEEE-CCEEEEecCCCCcccc
Confidence 11 22334444 9999999776655444
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=92.73 E-value=1.3 Score=37.41 Aligned_cols=99 Identities=10% Similarity=0.078 Sum_probs=57.3
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEe-------ecCCCCeeEEEEccC---CCEEEEe----------c
Q 036605 75 GLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREF-------KASEKPISSSAFLCE---EKIFALA----------S 134 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-------~~~~~~i~~l~~~~~---~~~l~~~----------~ 134 (340)
....|+|.|+|+.|+.+...|.|++++.. +.....+ .........|+++|+ +..|++. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46899999999845556778999999853 4322111 112345689999996 4444332 1
Q ss_pred CcEEEEECCCC--c--eeEE-eec------CCCCeEEEEECCCCCEEEEEE
Q 036605 135 SEVRILSLENG--E--EVLK-FSD------DVGPLQYVSASDGAKIIITAG 174 (340)
Q Consensus 135 ~~i~i~d~~~~--~--~~~~-~~~------~~~~v~~~~~s~~~~~l~s~~ 174 (340)
..|..|++... . .... +.. .......+.|.|||...++.+
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 23666766432 1 1111 111 111235799999996555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=92.69 E-value=6.8 Score=39.66 Aligned_cols=136 Identities=8% Similarity=0.137 Sum_probs=86.3
Q ss_pred EEEEEc---CCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeE
Q 036605 44 LLALGT---SNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISS 120 (340)
Q Consensus 44 ~l~~g~---~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 120 (340)
++++-- ....|.|.|+.++..+.+-. -.--+.-.+|..+.++.-. ...+.++|+.+...+..+... .+|.-
T Consensus 37 yicvre~~~~~~~vvIidl~~~~~~~rrp----i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~Vvf 110 (1630)
T 1xi4_A 37 FICIREKVGEQAQVVIIDMNDPSNPIRRP----ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTF 110 (1630)
T ss_pred eEEEEecCCCCceEEEEECCCCCCccccc----ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceE
Confidence 565532 33479999998876442211 1122333577676666544 679999999887766555443 34555
Q ss_pred EEEccCCCEEEEecCcEEEEECCCC-ceeEEeecC----CCCeEEEEECCCCCEEEEEEcC------CCeEEEEEc
Q 036605 121 SAFLCEEKIFALASSEVRILSLENG-EEVLKFSDD----VGPLQYVSASDGAKIIITAGYG------EKHLQVWRC 185 (340)
Q Consensus 121 l~~~~~~~~l~~~~~~i~i~d~~~~-~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~~------d~~i~iwd~ 185 (340)
-.|-.+..+-++.+..|+.|++... .+..-|.-| ...|..-..+++.++++..|-. .|.+.+|..
T Consensus 111 WkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~ 186 (1630)
T 1xi4_A 111 WKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (1630)
T ss_pred EEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeec
Confidence 5566555555667777999999643 233333333 3567777789999988866542 588899997
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=92.08 E-value=4.1 Score=33.09 Aligned_cols=188 Identities=12% Similarity=0.063 Sum_probs=94.9
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKS 102 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~ 102 (340)
.|..++..... .++. . ||.|+.|-......+. +.......|..++..... .++. . ||.|+.|-.
T Consensus 25 ~i~~ia~G~~h----------~~~l-~-~G~v~~wG~n~~Gqlg-~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~ 88 (282)
T 3qhy_B 25 GVDAIAGGYFH----------GLAL-K-GGKVLGWGANLNGQLT-MPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGG 88 (282)
T ss_dssp SCCEEEECSSE----------EEEE-E-TTEEEEEECCSSSTTS-CCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEEC
T ss_pred CCcEEEeCCCe----------EEEE-E-CCEEEEEeCCCCCCCC-CCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeC
Confidence 56666654322 2444 4 8999999754322111 010022356677654322 2333 4 889999865
Q ss_pred CCCeEEEEeecCCCCeeEEEEccCCCEEEEecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEE
Q 036605 103 EMGEVIREFKASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQV 182 (340)
Q Consensus 103 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~i 182 (340)
...-.+..-..-...|..++.......+++ ++.|+.|=....-.+-.-......|..++.......+ -. |+.|..
T Consensus 89 n~~Gqlg~P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~---l~-~G~v~~ 163 (282)
T 3qhy_B 89 NEDGQTTVPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA---VK-NGGVIA 163 (282)
T ss_dssp CTTSTTCCCGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE---EE-TTEEEE
T ss_pred CCCCCCCCCcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE---EE-CCEEEE
Confidence 432111110111235777777766666677 8889988754322111111122456677664443222 23 789999
Q ss_pred EEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 183 WRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 183 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
|-.. ...+..... .....+..+.+.. .+.++. .||.|+.|-.....++.
T Consensus 164 wG~n--~~gqlg~p~---~~~~~v~~i~~G~-----~hs~al-~~G~v~~wG~n~~gqlg 212 (282)
T 3qhy_B 164 WGDN--YFGQTTVPA---EAQSGVDDVAGGI-----FHSLAL-KDGKVIAWGDNRYKQTT 212 (282)
T ss_dssp EECC--TTSTTSCCG---GGGSSEEEEEECS-----SEEEEE-ETTEEEEEECCTTSTTC
T ss_pred ecCC--CCCCCCCce---ecCCCeEEEEecC-----CEEEEE-ECCeEEEEECCCCCCCC
Confidence 8763 211121111 1122344442222 333444 69999999877655544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=92.07 E-value=5.9 Score=34.79 Aligned_cols=101 Identities=13% Similarity=0.138 Sum_probs=60.6
Q ss_pred CCeEEEEEecCCCEEEEEeCC-CcEEEEeCCCCeEEE--Eeec------CCCCeeEEEEccC---CCEE-EEec------
Q 036605 74 GGLAGLAFAKKGRSLHVVGTN-GMASEMKSEMGEVIR--EFKA------SEKPISSSAFLCE---EKIF-ALAS------ 134 (340)
Q Consensus 74 ~~v~~v~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~--~~~~------~~~~i~~l~~~~~---~~~l-~~~~------ 134 (340)
.....|+|.|+|+.+++ ... +.|.+++..++.... .+.. ....+..|+++|+ +..| ++-.
T Consensus 27 ~~P~~~a~~pdG~l~V~-e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLT-ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEE-ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEE-EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 35679999999986665 455 579998876565322 2221 2345679999995 4444 3321
Q ss_pred --------CcEEEEECCCC-------ceeE-Eeec-CCCCeEEEEECCCCCEEEEEEc
Q 036605 135 --------SEVRILSLENG-------EEVL-KFSD-DVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 135 --------~~i~i~d~~~~-------~~~~-~~~~-~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
..|.-|++..+ +.+. .+.. .......|+|.|||...++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 13655655322 1121 1221 1234688999999987777554
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=7.9 Score=36.12 Aligned_cols=141 Identities=13% Similarity=0.023 Sum_probs=74.4
Q ss_pred EEEEEcCC------CcEEEEEccCCeeEEEecCCCCCCe-EEEEEecCCCEEEEEeCCC--cEEEEeCCCCeEEEEe---
Q 036605 44 LLALGTSN------GDILAVDVLTGEMKWKSTGRHPGGL-AGLAFAKKGRSLHVVGTNG--MASEMKSEMGEVIREF--- 111 (340)
Q Consensus 44 ~l~~g~~d------g~i~i~d~~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~--- 111 (340)
+++.|+.+ ..+.+||..+.+.... ........ .+.+...++..++.||.++ .+.+||+.+..-...-
T Consensus 454 lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~-~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g 532 (695)
T 2zwa_A 454 LLLIGGRKAPHQGLSDNWIFDMKTREWSMI-KSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD 532 (695)
T ss_dssp EEEECCBSSTTCBCCCCEEEETTTTEEEEC-CCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSS
T ss_pred EEEEcCCCCCCCccccEEEEeCCCCcEEEC-CCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCC
Confidence 77777644 3588999888754322 11011111 2233323677778877654 7899999886532221
Q ss_pred --ecCCCCeeEEEEccC-CCEEEEecC---------cEEEEECCCCce-----eEEeec---CCCCeEEEEECCCCCEEE
Q 036605 112 --KASEKPISSSAFLCE-EKIFALASS---------EVRILSLENGEE-----VLKFSD---DVGPLQYVSASDGAKIII 171 (340)
Q Consensus 112 --~~~~~~i~~l~~~~~-~~~l~~~~~---------~i~i~d~~~~~~-----~~~~~~---~~~~v~~~~~s~~~~~l~ 171 (340)
........++.+..+ +++++.++. ++.+||+.+... -..+.. ....-..+....++..++
T Consensus 533 ~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv 612 (695)
T 2zwa_A 533 EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLI 612 (695)
T ss_dssp GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEE
T ss_pred CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEE
Confidence 111222233555655 555565543 289999988761 122211 111112233333366666
Q ss_pred EEEcC-------CCeEEEEEc
Q 036605 172 TAGYG-------EKHLQVWRC 185 (340)
Q Consensus 172 s~~~~-------d~~i~iwd~ 185 (340)
.||.. ...+.+||+
T Consensus 613 ~GG~~~~~~~~~~~~v~~yd~ 633 (695)
T 2zwa_A 613 VGGTSPSGLFDRTNSIISLDP 633 (695)
T ss_dssp ECCBCSSCCCCTTTSEEEEET
T ss_pred ECCccCCCCCCCCCeEEEEEC
Confidence 66642 345888887
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=91.81 E-value=8.6 Score=36.16 Aligned_cols=136 Identities=11% Similarity=0.042 Sum_probs=84.0
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCC-C----CCCeEEEEEecCCCEEEEEeCCCc
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGR-H----PGGLAGLAFAKKGRSLHVVGTNGM 96 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-h----~~~v~~v~~~~~~~~l~s~~~dg~ 96 (340)
..|.++....++. |.+|+.+| |..|+..+++.. .+... . ...|.++...+++..|..|.. +-
T Consensus 146 ~~i~~i~~d~~g~----------lWigt~~G-l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G 212 (758)
T 3ott_A 146 NTIYSIIRTKDNQ----------IYVGTYNG-LCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY 212 (758)
T ss_dssp SCEEEEEECTTCC----------EEEEETTE-EEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE
T ss_pred CeEEEEEEcCCCC----------EEEEeCCC-HhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CC
Confidence 4577777776677 55566554 778888776543 22210 1 224888888877776666664 45
Q ss_pred EEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCcEEEEECCCCceeEEeec--------CCCCeEEEEECCCCC
Q 036605 97 ASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLKFSD--------DVGPLQYVSASDGAK 168 (340)
Q Consensus 97 i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~~~--------~~~~v~~~~~s~~~~ 168 (340)
+..+|..+++...........|.++....+|.+.+...+-+.+++..+++. ..+.. ....|.++....+|.
T Consensus 213 l~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~ 291 (758)
T 3ott_A 213 LFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHN 291 (758)
T ss_dssp EEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEETTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTTCC
T ss_pred CeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCC
Confidence 888998877543221112335788888888888776655588888776533 22211 124578887777775
Q ss_pred EEE
Q 036605 169 III 171 (340)
Q Consensus 169 ~l~ 171 (340)
.-+
T Consensus 292 lWi 294 (758)
T 3ott_A 292 IWL 294 (758)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=91.02 E-value=8.6 Score=34.66 Aligned_cols=188 Identities=10% Similarity=0.106 Sum_probs=107.5
Q ss_pred EEEEEc-CCCcEEEEEccCCeeEEEecCCCCCCeEEEEEe--cCCCEEEEEeCC-------CcEE------------EEe
Q 036605 44 LLALGT-SNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFA--KKGRSLHVVGTN-------GMAS------------EMK 101 (340)
Q Consensus 44 ~l~~g~-~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~--~~~~~l~s~~~d-------g~i~------------~wd 101 (340)
+|+.-. .+..|-..++...+....+.-.....+.+++|. |+..+++.++.. |... ..|
T Consensus 144 ylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 144 YLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred EEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 777655 456788888888876655554466788899986 677788876643 2211 112
Q ss_pred CCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC----------------c-EEEEEC----------------------
Q 036605 102 SEMGEVIREFKASEKPISSSAFLCEEKIFALASS----------------E-VRILSL---------------------- 142 (340)
Q Consensus 102 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~----------------~-i~i~d~---------------------- 142 (340)
..+.+....+.. ..........+++.+.++... + +.++++
T Consensus 224 ~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V 302 (638)
T 3sbq_A 224 AETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV 302 (638)
T ss_dssp TTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred CCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence 222222222111 112233445666777655211 1 555554
Q ss_pred ---CC----CceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCC----CCc--c-CC--ceeeecCCCee
Q 036605 143 ---EN----GEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISS----KTV--N-KG--PALSMRHSPVA 206 (340)
Q Consensus 143 ---~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~----~~~--~-~~--~~~~~~~~~~~ 206 (340)
+. +..+..+..-......+.++|||+|++.++..+.++.|+|++.-. .+. . .. ....++-.+..
T Consensus 303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH 382 (638)
T 3sbq_A 303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH 382 (638)
T ss_dssp EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE
T ss_pred EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE
Confidence 22 111111111223456778899999999999889999999984110 011 0 00 01122444444
Q ss_pred eeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 207 IDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 207 ~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
..+ .++|....+..-|..|.-|++..
T Consensus 383 t~F-----d~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 383 TTF-----DGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEE-----CSSSEEEEEETTTTEEEEEEHHH
T ss_pred EEE-----CCCCceEeeeeecceEEEEeccH
Confidence 444 78887677777999999999875
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=88.55 E-value=12 Score=32.88 Aligned_cols=103 Identities=15% Similarity=0.011 Sum_probs=59.5
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe---eEEEecC--------CCCCCeEEEEEecC---CCE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE---MKWKSTG--------RHPGGLAGLAFAKK---GRS 87 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~--------~h~~~v~~v~~~~~---~~~ 87 (340)
..-+.|+|.|++.. .|+++...|.|++++..... .+..+.. ...+....|+|+|+ ...
T Consensus 14 ~~P~~~a~~pdG~~--------rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~ 85 (463)
T 2wg3_C 14 RQPVGALHSGDGSQ--------RLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGK 85 (463)
T ss_dssp SSEEEEECCSSSSC--------CEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCE
T ss_pred CCceEEEECCCCCe--------EEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCE
Confidence 34578999999820 26666788999999754221 1222211 02457899999996 334
Q ss_pred EEEE-eC--C----------CcEEEEeCCC----------CeEEEEee--cCCCCeeEEEEccCCCEEEE
Q 036605 88 LHVV-GT--N----------GMASEMKSEM----------GEVIREFK--ASEKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 88 l~s~-~~--d----------g~i~~wd~~~----------~~~~~~~~--~~~~~i~~l~~~~~~~~l~~ 132 (340)
|+.. +. + ..|.-|.+.. .+.+..+. ........|+|.|||.+.++
T Consensus 86 lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~ 155 (463)
T 2wg3_C 86 LYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYII 155 (463)
T ss_dssp EEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEE
T ss_pred EEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEE
Confidence 4443 21 1 1455565532 12333332 12234678999999987766
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=86.48 E-value=12 Score=32.95 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=60.0
Q ss_pred CeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCe---EEEEee---------cCCCCeeEEEEccC----CCEEEE-e---
Q 036605 75 GLAGLAFAKKGR-SLHVVGTNGMASEMKSEMGE---VIREFK---------ASEKPISSSAFLCE----EKIFAL-A--- 133 (340)
Q Consensus 75 ~v~~v~~~~~~~-~l~s~~~dg~i~~wd~~~~~---~~~~~~---------~~~~~i~~l~~~~~----~~~l~~-~--- 133 (340)
.-..|+|.|++. .|+++...|.|++++..... .+..+. ........|+++|+ +.+.++ .
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 56666889999999754321 122211 11456788999996 333333 1
Q ss_pred c----------CcEEEEECCC----------CceeEEee--cCCCCeEEEEECCCCCEEEEEEc
Q 036605 134 S----------SEVRILSLEN----------GEEVLKFS--DDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 134 ~----------~~i~i~d~~~----------~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+.
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 1244455532 12233332 12234678999999987777665
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=83.85 E-value=17 Score=35.29 Aligned_cols=38 Identities=5% Similarity=0.102 Sum_probs=33.0
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 036605 75 GLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK 112 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 112 (340)
.+.+++..++..++++.+.|+++++|++.+++.+....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56777888888899999999999999999999887643
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=82.46 E-value=5.8 Score=35.80 Aligned_cols=62 Identities=24% Similarity=0.293 Sum_probs=42.0
Q ss_pred CCeEEEEeeccccccccccCceEEE-EEcC-----------CCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLA-LGTS-----------NGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLH 89 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~-~g~~-----------dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~ 89 (340)
.....|.|.++|. +.+ +-.. ...|+.++..++++...+.......++.++|+||++.|+
T Consensus 476 nsPDnL~fd~~G~---------LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLf 546 (592)
T 4a9v_A 476 NSPDGLGFDKAGR---------LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF 546 (592)
T ss_dssp CCEEEEEECTTCC---------EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred CCCCceEECCCCC---------EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEE
Confidence 3456788888887 444 2111 125777787788766555442345789999999999988
Q ss_pred EEe
Q 036605 90 VVG 92 (340)
Q Consensus 90 s~~ 92 (340)
++-
T Consensus 547 V~v 549 (592)
T 4a9v_A 547 VGI 549 (592)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=81.08 E-value=4.7 Score=36.65 Aligned_cols=59 Identities=25% Similarity=0.362 Sum_probs=42.1
Q ss_pred eEEEEeeccccccccccCceEEEEEcC------------CCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEE
Q 036605 24 YSCLACGFVGKKRRKERGTLLLALGTS------------NGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVV 91 (340)
Q Consensus 24 v~~l~~sp~~~~~~~~~~~~~l~~g~~------------dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 91 (340)
.--|+|+|.|. +++.-.. +..+.+++..+++....+...-...++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~---------LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGR---------LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCC---------EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCC---------EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45688999888 4443221 12467777788887766666455789999999999988875
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.86 E-value=16 Score=36.37 Aligned_cols=38 Identities=5% Similarity=0.102 Sum_probs=31.9
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q 036605 75 GLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK 112 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 112 (340)
.+.+++..++..++++-+.|+++++|++.+++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566667788899999999999999999999887754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 340 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-05 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.5 bits (106), Expect = 4e-06
Identities = 13/114 (11%), Positives = 32/114 (28%), Gaps = 3/114 (2%)
Query: 72 HPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFA 131
G K G L + G + + + F K
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL 263
Query: 132 LASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVW 183
+ + +R+ +N + + + + A ++T ++ ++VW
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV-DQTVKVW 316
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.3 bits (103), Expect = 1e-05
Identities = 17/144 (11%), Positives = 45/144 (31%), Gaps = 6/144 (4%)
Query: 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS--EMK 101
L G + DV G + TG H + + F G + + +++
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 102 SEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQ 159
++ + I+S +F ++ + + + + +
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Query: 160 YVSASDGAKIIITAGYGEKHLQVW 183
+ +D + T + + L++W
Sbjct: 317 CLGVTDDGMAVATGSW-DSFLKIW 339
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 340 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.94 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.92 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.91 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.91 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.9 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.88 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.87 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.84 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.83 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.81 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.77 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.74 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.71 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.7 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.66 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.61 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.59 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.59 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.58 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.54 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.52 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.33 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.23 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.16 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.15 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.11 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.11 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.98 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.96 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.89 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.83 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.8 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.79 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.69 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.69 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.69 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.67 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.67 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.66 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.62 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.6 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.55 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.53 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.53 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.47 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.06 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.05 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.77 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.58 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.32 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.27 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.19 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.14 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.07 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.06 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.98 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.95 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.88 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.86 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.86 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.43 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.31 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.59 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.43 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.33 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.32 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.24 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 94.66 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.21 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.2 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.44 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 92.17 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 91.83 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 90.77 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 87.67 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 85.05 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 80.87 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 80.85 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.7e-34 Score=241.30 Aligned_cols=222 Identities=13% Similarity=0.127 Sum_probs=187.1
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee--EEEecCCCCCCeEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM--KWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~h~~~v~~ 78 (340)
|||+.++.....|. +|...|+|++|+|+++ +||+|+.||+|++||+.++.. ...+.. |.+.|.+
T Consensus 42 i~~~~~~~~~~~~~----~H~~~v~~~~~sp~g~---------~latg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~ 107 (311)
T d1nr0a1 42 TVPVGSLTDTEIYT----EHSHQTTVAKTSPSGY---------YCASGDVHGNVRIWDTTQTTHILKTTIPV-FSGPVKD 107 (311)
T ss_dssp EEETTCSSCCEEEC----CCSSCEEEEEECTTSS---------EEEEEETTSEEEEEESSSTTCCEEEEEEC-SSSCEEE
T ss_pred EEECCCCceeEEEc----CCCCCEEEEEEeCCCC---------eEeccccCceEeeeeeecccccccccccc-ccCcccc
Confidence 58888888888887 8999999999999999 999999999999999988763 345666 9999999
Q ss_pred EEEecCCCEEEEEeCC--CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCE-EEEec--CcEEEEECCCCceeEEeec
Q 036605 79 LAFAKKGRSLHVVGTN--GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKI-FALAS--SEVRILSLENGEEVLKFSD 153 (340)
Q Consensus 79 v~~~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~-l~~~~--~~i~i~d~~~~~~~~~~~~ 153 (340)
++|+|+++.|++++.+ ..+++|++.+++....+.+|...|.+++|+|++.+ +++++ +.|++||+++++....+..
T Consensus 108 v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~ 187 (311)
T d1nr0a1 108 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187 (311)
T ss_dssp EEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccccc
Confidence 9999999999998864 56999999999988889999999999999999986 55554 4499999999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCc----eeeecCCCeeeeeecCCCCCCCCEEEEEeCCCc
Q 036605 154 DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGP----ALSMRHSPVAIDCKNSPNGEDGTVILAVAESGV 229 (340)
Q Consensus 154 ~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~ 229 (340)
|...|.++.|+|+++++++++. |+.|++||++ .+.....+ ....+|...+..+ .| +|++.+|++|+.||.
T Consensus 188 ~~~~i~~v~~~p~~~~l~~~~~-d~~v~~~d~~--~~~~~~~~~~~~~~~~~h~~~V~~~--~~-s~~~~~l~tgs~Dg~ 261 (311)
T d1nr0a1 188 HTKFVHSVRYNPDGSLFASTGG-DGTIVLYNGV--DGTKTGVFEDDSLKNVAHSGSVFGL--TW-SPDGTKIASASADKT 261 (311)
T ss_dssp CSSCEEEEEECTTSSEEEEEET-TSCEEEEETT--TCCEEEECBCTTSSSCSSSSCEEEE--EE-CTTSSEEEEEETTSE
T ss_pred ccccccccccCccccccccccc-cccccccccc--ccccccccccccccccccccccccc--cc-CCCCCEEEEEeCCCe
Confidence 9999999999999999999888 9999999984 32221111 1112455566665 66 899999999999999
Q ss_pred EEEEECCCCCccC
Q 036605 230 AYSWDLKTVSQDE 242 (340)
Q Consensus 230 i~vwd~~~~~~~~ 242 (340)
|+|||+.+++.+.
T Consensus 262 v~iwd~~t~~~~~ 274 (311)
T d1nr0a1 262 IKIWNVATLKVEK 274 (311)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEECCCCcEEE
Confidence 9999998876554
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3e-31 Score=223.95 Aligned_cols=214 Identities=13% Similarity=0.114 Sum_probs=174.7
Q ss_pred CccCCCCcee--eeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcC--CCcEEEEEccCCeeEEEecCCCCCCe
Q 036605 1 IWSTNDGSLL--AEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTS--NGDILAVDVLTGEMKWKSTGRHPGGL 76 (340)
Q Consensus 1 vwd~~~g~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~h~~~v 76 (340)
|||+.++... ..+. .|...|.+++|+|+++ +|++++. +..+++|++++++....+.+ |.+.|
T Consensus 84 iwd~~~~~~~~~~~~~----~~~~~v~~v~~s~d~~---------~l~~~~~~~~~~~~v~~~~~~~~~~~l~~-h~~~v 149 (311)
T d1nr0a1 84 IWDTTQTTHILKTTIP----VFSGPVKDISWDSESK---------RIAAVGEGRERFGHVFLFDTGTSNGNLTG-QARAM 149 (311)
T ss_dssp EEESSSTTCCEEEEEE----CSSSCEEEEEECTTSC---------EEEEEECCSSCSEEEEETTTCCBCBCCCC-CSSCE
T ss_pred eeeeeccccccccccc----cccCcccccccccccc---------ccccccccccccccccccccccccccccc-ccccc
Confidence 6898887644 3454 7889999999999998 8888875 45699999999988888888 99999
Q ss_pred EEEEEecCCCE-EEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEe--
Q 036605 77 AGLAFAKKGRS-LHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKF-- 151 (340)
Q Consensus 77 ~~v~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~-- 151 (340)
++++|+|++.+ |++|+.|+.|++||+++++....+..|..+|.++.++|+++++++++. .|++||+.++..+..+
T Consensus 150 ~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~ 229 (311)
T d1nr0a1 150 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED 229 (311)
T ss_dssp EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC
T ss_pred ccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccc
Confidence 99999999885 788999999999999999999999999999999999999999988654 4999999998777655
Q ss_pred -----ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeC
Q 036605 152 -----SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAE 226 (340)
Q Consensus 152 -----~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~ 226 (340)
.+|...|.+++|+|++++|++++. |+.|+|||+ .+++....+............+ .+++.++++++.
T Consensus 230 ~~~~~~~h~~~V~~~~~s~~~~~l~tgs~-Dg~v~iwd~--~t~~~~~~l~~~~~~~~~~~~~-----~~~~~~l~s~s~ 301 (311)
T d1nr0a1 230 DSLKNVAHSGSVFGLTWSPDGTKIASASA-DKTIKIWNV--ATLKVEKTIPVGTRIEDQQLGI-----IWTKQALVSISA 301 (311)
T ss_dssp TTSSSCSSSSCEEEEEECTTSSEEEEEET-TSEEEEEET--TTTEEEEEEECCSSGGGCEEEE-----EECSSCEEEEET
T ss_pred cccccccccccccccccCCCCCEEEEEeC-CCeEEEEEC--CCCcEEEEEECCCCccceEEEE-----EecCCEEEEEEC
Confidence 357889999999999999999887 999999998 4554433332111111222333 345567999999
Q ss_pred CCcEEEEECC
Q 036605 227 SGVAYSWDLK 236 (340)
Q Consensus 227 dg~i~vwd~~ 236 (340)
||.|++||.+
T Consensus 302 dG~i~~wd~d 311 (311)
T d1nr0a1 302 NGFINFVNPE 311 (311)
T ss_dssp TCCEEEEETT
T ss_pred CCEEEEEeCC
Confidence 9999999964
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.3e-30 Score=217.28 Aligned_cols=217 Identities=12% Similarity=0.130 Sum_probs=173.4
Q ss_pred ceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCE
Q 036605 8 SLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRS 87 (340)
Q Consensus 8 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 87 (340)
+..+++. +|...|+|++|+|+++ +||+|+.||+|+|||+.+++.+..+.. |...|.+++|+|++.+
T Consensus 46 ~~~~tL~----GH~~~I~~l~~s~~~~---------~l~sgs~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~ 111 (340)
T d1tbga_ 46 RTRRTLR----GHLAKIYAMHWGTDSR---------LLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNY 111 (340)
T ss_dssp CEEEEEC----CCSSCEEEEEECTTSS---------EEEEEETTTEEEEEETTTTEEEEEEEC-SCSCEEEEEECTTSSE
T ss_pred eeeEEEC----CCCCCEEEEEECCCCC---------EEEEEECCCceeeeecccceeEEEEec-ccccEEeeEeecccee
Confidence 3445666 8999999999999999 999999999999999999999999988 9999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCe----EEE-----------------------------------------EeecCCCCeeEEE
Q 036605 88 LHVVGTNGMASEMKSEMGE----VIR-----------------------------------------EFKASEKPISSSA 122 (340)
Q Consensus 88 l~s~~~dg~i~~wd~~~~~----~~~-----------------------------------------~~~~~~~~i~~l~ 122 (340)
+++++.|+.+.+|+..... ... ....+...+....
T Consensus 112 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (340)
T d1tbga_ 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 191 (340)
T ss_dssp EEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred eeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeec
Confidence 9999999999999865421 111 1122344566777
Q ss_pred EccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeee
Q 036605 123 FLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSM 200 (340)
Q Consensus 123 ~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 200 (340)
+.+.+.+++++..+ |++||+++++.+..+.+|...|.+++|+|++.+|++++. |+.|++|+++ ......... ..
T Consensus 192 ~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~-d~~i~~~~~~--~~~~~~~~~-~~ 267 (340)
T d1tbga_ 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD-DATCRLFDLR--ADQELMTYS-HD 267 (340)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETT--TTEEEEEEC-CT
T ss_pred cccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeec--ccccccccc-cc
Confidence 78888888876544 999999999999999999999999999999999999888 9999999984 322211111 01
Q ss_pred cCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCC
Q 036605 201 RHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTN 245 (340)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~ 245 (340)
.+...+..+ .+ ++++.+|++|+.||.|++||+.+++.+..+.
T Consensus 268 ~~~~~i~~~--~~-s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 309 (340)
T d1tbga_ 268 NIICGITSV--SF-SKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309 (340)
T ss_dssp TCCSCEEEE--EE-CSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred cccCceEEE--EE-CCCCCEEEEEECCCEEEEEECCCCcEEEEEc
Confidence 223334444 45 7899999999999999999998877665443
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.6e-29 Score=211.97 Aligned_cols=219 Identities=13% Similarity=0.187 Sum_probs=179.3
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAF 81 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 81 (340)
|.+. +.....+. +|...|+|++|+|+++ +|++|+.||+|+|||+.+++.+..+.+ |.+.|.+++|
T Consensus 3 w~p~-~~~~~~L~----GH~~~I~~l~~sp~~~---------~l~s~s~Dg~i~iWd~~~~~~~~~~~~-h~~~V~~~~~ 67 (317)
T d1vyhc1 3 WIPR-PPEKYALS----GHRSPVTRVIFHPVFS---------VMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISF 67 (317)
T ss_dssp CCCC-SSCSCEEE----CCSSCEEEEEECSSSS---------EEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEE
T ss_pred cCCC-CCccEEEc----CCCCCeEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCCEEEEEeC-CCCcEEEEee
Confidence 5443 33445666 8999999999999999 999999999999999999888877766 6666666666
Q ss_pred ecC------------------------------------------CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCee
Q 036605 82 AKK------------------------------------------GRSLHVVGTNGMASEMKSEMGEVIREFKASEKPIS 119 (340)
Q Consensus 82 ~~~------------------------------------------~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 119 (340)
+|+ ++.+++++.|+.+++||+.+++.+..+..|...+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (317)
T d1vyhc1 68 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 147 (317)
T ss_dssp CTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred ecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcce
Confidence 554 45567788889999999999999999999999999
Q ss_pred EEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCC--------------------CCEEEEEEcCC
Q 036605 120 SSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDG--------------------AKIIITAGYGE 177 (340)
Q Consensus 120 ~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~s~~~~d 177 (340)
+++++|++.++++++.+ |++|++.+++....+..|...+..+.|+|+ +.++++++. |
T Consensus 148 ~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d 226 (317)
T d1vyhc1 148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-D 226 (317)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET-T
T ss_pred eeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC-C
Confidence 99999999999886554 999999999999999999999999999876 346777666 9
Q ss_pred CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCC
Q 036605 178 KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKT 244 (340)
Q Consensus 178 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~ 244 (340)
+.|++|++ .+++....+. .|...+..+ .+ ++++.+|++++.||.|++||+.+++.+..+
T Consensus 227 ~~i~~~~~--~~~~~~~~~~---~~~~~v~~~--~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 285 (317)
T d1vyhc1 227 KTIKMWDV--STGMCLMTLV---GHDNWVRGV--LF-HSGGKFILSCADDKTLRVWDYKNKRCMKTL 285 (317)
T ss_dssp SEEEEEET--TTTEEEEEEE---CCSSCEEEE--EE-CSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred CEEEEEEC--CCCcEEEEEe---CCCCCEEEE--EE-CCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence 99999998 4544433333 566666555 55 789999999999999999999987766543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=2.2e-30 Score=224.04 Aligned_cols=208 Identities=12% Similarity=0.077 Sum_probs=166.2
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
..+|+|++|+|+++ +||+|+.||.|+|||..+++ ....+.+ |.+.|++++|+|++++|++|+.|+.|+
T Consensus 7 ~~pIt~~~~s~dg~---------~la~~~~~~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~~l~s~s~D~~i~ 76 (371)
T d1k8kc_ 7 VEPISCHAWNKDRT---------QIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAY 76 (371)
T ss_dssp SSCCCEEEECTTSS---------EEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CCCeEEEEECCCCC---------EEEEEeCCCEEEEEECCCCCEEEEEEecC-CCCCEEEEEECCCCCEEEEEECCCeEE
Confidence 47899999999999 99999999999999998876 5566777 999999999999999999999999999
Q ss_pred EEeCCCCeEEE--EeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCcee----EEeecCCCCeEEEEECCCCCEE
Q 036605 99 EMKSEMGEVIR--EFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEV----LKFSDDVGPLQYVSASDGAKII 170 (340)
Q Consensus 99 ~wd~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l 170 (340)
+||+.++.... .+..|...|.+++|+|+++.+++++.+ +++|++...... .....|...|.+++|+|++.+|
T Consensus 77 vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l 156 (371)
T d1k8kc_ 77 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 156 (371)
T ss_dssp EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred EEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccce
Confidence 99998776543 456778899999999999999886554 999988765433 2335688999999999999999
Q ss_pred EEEEcCCCeEEEEEccCCCCCccC------------Ccee-eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 171 ITAGYGEKHLQVWRCDISSKTVNK------------GPAL-SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 171 ~s~~~~d~~i~iwd~~~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
++++. |+.|++|++......... .... ...|...+..+ +| +|++.+|++++.||.|++||+..
T Consensus 157 ~s~s~-D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-s~~g~~l~s~~~d~~i~iwd~~~ 232 (371)
T d1k8kc_ 157 AAGSC-DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV--CF-SANGSRVAWVSHDSTVCLADADK 232 (371)
T ss_dssp EEEET-TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE--EE-CSSSSEEEEEETTTEEEEEEGGG
T ss_pred ecccc-CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEE--Ee-ecccccccccccCCcceEEeeec
Confidence 99888 999999998422211000 0111 12344445554 56 78999999999999999999988
Q ss_pred CCccC
Q 036605 238 VSQDE 242 (340)
Q Consensus 238 ~~~~~ 242 (340)
+..+.
T Consensus 233 ~~~~~ 237 (371)
T d1k8kc_ 233 KMAVA 237 (371)
T ss_dssp TTEEE
T ss_pred cccee
Confidence 66554
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6e-29 Score=212.11 Aligned_cols=219 Identities=10% Similarity=0.066 Sum_probs=182.8
Q ss_pred CccCCCCcee---eeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCC--eeEEEecCCCCCC
Q 036605 1 IWSTNDGSLL---AEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTG--EMKWKSTGRHPGG 75 (340)
Q Consensus 1 vwd~~~g~~~---~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~~h~~~ 75 (340)
|||+.++... ...... +|...|++++|+|+++ +|++|+.||.|++||+... +....+.. |...
T Consensus 76 iWd~~~~~~~~~~~~~~~~--~h~~~I~~v~~s~dg~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~ 143 (337)
T d1gxra_ 76 VWDISHPGNKSPVSQLDCL--NRDNYIRSCKLLPDGC---------TLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPA 143 (337)
T ss_dssp EEETTSTTCCSCSEEEECS--CTTSBEEEEEECTTSS---------EEEEEESSSEEEEEECCCC--EEEEEEEC-SSSC
T ss_pred EEEccCCcccceeEEeeec--CCCCcEEEEEEcCCCC---------EEEEeeccccccccccccccccccccccc-cccc
Confidence 6888765432 233322 7889999999999999 9999999999999998754 45566666 8999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEeec
Q 036605 76 LAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSD 153 (340)
Q Consensus 76 v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~ 153 (340)
+.+++|+|++..+++++.|+.|.+|++.+++.......|...+.+++|++++..+++++. .+++||+++++.+..+.
T Consensus 144 v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~- 222 (337)
T d1gxra_ 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD- 222 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecccc-
Confidence 999999999999999999999999999999998888889999999999999999988654 49999999998776664
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEE
Q 036605 154 DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSW 233 (340)
Q Consensus 154 ~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vw 233 (340)
|...|.+++|+|++.++++++. |+.+++||++ .++.. ....|...+..+ .| +|++.+|++++.||.|++|
T Consensus 223 ~~~~i~~l~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~~----~~~~~~~~i~~v--~~-s~~g~~l~s~s~Dg~i~iw 292 (337)
T d1gxra_ 223 FTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVN--KPDKY----QLHLHESCVLSL--KF-AYCGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEET-TSCEEEEETT--SSCEE----EECCCSSCEEEE--EE-CTTSSEEEEEETTSEEEEE
T ss_pred cccceEEEEEcccccccceecc-cccccccccc--ccccc----cccccccccceE--EE-CCCCCEEEEEeCCCeEEEE
Confidence 7889999999999999999887 9999999984 33321 122555566655 56 8999999999999999999
Q ss_pred ECCCCCccC
Q 036605 234 DLKTVSQDE 242 (340)
Q Consensus 234 d~~~~~~~~ 242 (340)
|+.+++.+.
T Consensus 293 d~~~~~~~~ 301 (337)
T d1gxra_ 293 RTPYGASIF 301 (337)
T ss_dssp ETTTCCEEE
T ss_pred ECCCCCEEE
Confidence 998876554
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=1.1e-28 Score=206.62 Aligned_cols=216 Identities=14% Similarity=0.125 Sum_probs=168.4
Q ss_pred CceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCC
Q 036605 7 GSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGR 86 (340)
Q Consensus 7 g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 86 (340)
|++.+.+. +|...|+|++|+|+++ +|++|+.||+|++||+++++....+...|...|++++|+|++.
T Consensus 2 g~~~~~~~----GH~~~V~~l~~s~dg~---------~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~ 68 (299)
T d1nr0a2 2 GSIDQVRY----GHNKAITALSSSADGK---------TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68 (299)
T ss_dssp TEEEEEEC----CCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC
T ss_pred CccceEcC----CCCCCcEEEEECCCCC---------EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce
Confidence 56677777 8999999999999999 9999999999999999999988888666999999999999986
Q ss_pred EEEEEeCCCcEEEEeCCCCe--------------E-------------------EEEee-------cCCCCeeEEEEccC
Q 036605 87 SLHVVGTNGMASEMKSEMGE--------------V-------------------IREFK-------ASEKPISSSAFLCE 126 (340)
Q Consensus 87 ~l~s~~~dg~i~~wd~~~~~--------------~-------------------~~~~~-------~~~~~i~~l~~~~~ 126 (340)
+++++.|+.+++|+..... . +..+. .....+.+++++|+
T Consensus 69 -~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~ 147 (299)
T d1nr0a2 69 -LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND 147 (299)
T ss_dssp -EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT
T ss_pred -eecccceeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5567889999999864321 0 00000 12335678899999
Q ss_pred CCEEEEecCc--EEEEECCCCceeE-EeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCC
Q 036605 127 EKIFALASSE--VRILSLENGEEVL-KFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHS 203 (340)
Q Consensus 127 ~~~l~~~~~~--i~i~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 203 (340)
+.++++++.+ |++||+++++... ....|...|.+++|+|++.+|++++. |+.|++||+. .+...........|.
T Consensus 148 ~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~~~~--~~~~~~~~~~~~~h~ 224 (299)
T d1nr0a2 148 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVA--NNFELAHTNSWTFHT 224 (299)
T ss_dssp SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEEGG--GTTEESCCCCCCCCS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc--ccccccccccccccc
Confidence 9999886544 9999998876543 44678899999999999999999887 9999999984 332222222112455
Q ss_pred CeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 204 PVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
..+..+ .| +|++.+|++|+.||.|++||+.+.....
T Consensus 225 ~~v~~l--~~-s~~~~~l~sgs~dg~i~iwd~~~~~~~~ 260 (299)
T d1nr0a2 225 AKVACV--SW-SPDNVRLATGSLDNSVIVWNMNKPSDHP 260 (299)
T ss_dssp SCEEEE--EE-CTTSSEEEEEETTSCEEEEETTCTTSCC
T ss_pred cccccc--cc-cccccceEEEcCCCEEEEEECCCCCcce
Confidence 556555 56 8999999999999999999998765443
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.7e-28 Score=209.24 Aligned_cols=209 Identities=16% Similarity=0.233 Sum_probs=178.7
Q ss_pred CccCCCC--ceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEE
Q 036605 1 IWSTNDG--SLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g--~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~ 78 (340)
|||+... +....+. .|...+.+++|+|++. ++++++.++.|.+|++.+++....... |...|.+
T Consensus 123 iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~---------~l~s~~~d~~i~~~~~~~~~~~~~~~~-~~~~v~~ 188 (337)
T d1gxra_ 123 IWDLAAPTPRIKAELT----SSAPACYALAISPDSK---------VCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASC 188 (337)
T ss_dssp EEECCCC--EEEEEEE----CSSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEE
T ss_pred cccccccccccccccc----cccccccccccccccc---------ccccccccccccccccccccccccccc-ccccccc
Confidence 5887643 4555665 7889999999999999 899999999999999999998888877 9999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCC
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVG 156 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~ 156 (340)
++|++++..+++++.|+.|++||+++++.+..+. +...|.+++|+|++.++++++.+ +++||+.+++.. ....|..
T Consensus 189 l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~ 266 (337)
T d1gxra_ 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHES 266 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSS
T ss_pred ccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccc-ccccccc
Confidence 9999999999999999999999999999877764 67889999999999999886544 999999988654 5567899
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
.|.+++|+|++++|++++. |+.|++||+ ..++.. ....|...+..+ .| +|++.+|++|+.||.|+|||+
T Consensus 267 ~i~~v~~s~~g~~l~s~s~-Dg~i~iwd~--~~~~~~----~~~~~~~~v~~~--~~-s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 267 CVLSLKFAYCGKWFVSTGK-DNLLNAWRT--PYGASI----FQSKESSSVLSC--DI-SVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CEEEEEECTTSSEEEEEET-TSEEEEEET--TTCCEE----EEEECSSCEEEE--EE-CTTSCEEEEEETTSCEEEEEE
T ss_pred ccceEEECCCCCEEEEEeC-CCeEEEEEC--CCCCEE----EEccCCCCEEEE--EE-eCCCCEEEEEeCCCeEEEEEE
Confidence 9999999999999999888 999999998 444432 223555566655 66 899999999999999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.2e-28 Score=209.30 Aligned_cols=212 Identities=17% Similarity=0.224 Sum_probs=178.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe----eEEEecC------
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE----MKWKSTG------ 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~------ 70 (340)
|||+.+++.+..+. .|...|++++|+|++. ++++|+.|+.+.+|+..... ....+.+
T Consensus 81 iWd~~~~~~~~~~~----~~~~~v~~v~~~~~~~---------~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (340)
T d1tbga_ 81 IWDSYTTNKVHAIP----LRSSWVMTCAYAPSGN---------YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS 147 (340)
T ss_dssp EEETTTTEEEEEEE----CSCSCEEEEEECTTSS---------EEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEE
T ss_pred eeecccceeEEEEe----cccccEEeeEeeccce---------eeeeecccceeecccccccccccccceeccccccccc
Confidence 69999999999888 7899999999999999 99999999999999865432 1111110
Q ss_pred ----------------------------------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC
Q 036605 71 ----------------------------------RHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEK 116 (340)
Q Consensus 71 ----------------------------------~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 116 (340)
.+...+....+.+.+..+++++.|+.|++||+++++.+..+..|..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~ 227 (340)
T d1tbga_ 148 CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227 (340)
T ss_dssp EEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSS
T ss_pred ccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCC
Confidence 1445677888888899999999999999999999999999999999
Q ss_pred CeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEe--ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCc
Q 036605 117 PISSSAFLCEEKIFALASSE--VRILSLENGEEVLKF--SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTV 192 (340)
Q Consensus 117 ~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~ 192 (340)
.|.+++|+|++.+|++++.+ |++||+.....+..+ ..+...+.+++|+|++.+|++++. |+.|++||+ .+++.
T Consensus 228 ~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~i~iwd~--~~~~~ 304 (340)
T d1tbga_ 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDA--LKADR 304 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEET-TSCEEEEET--TTCCE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEEC-CCEEEEEEC--CCCcE
Confidence 99999999999999886554 999999998877665 456678999999999999999888 999999998 45554
Q ss_pred cCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 193 NKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
...+. +|...+..+ .| +|++.+|++|+.||.|+|||
T Consensus 305 ~~~~~---~H~~~V~~l--~~-s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 305 AGVLA---GHDNRVSCL--GV-TDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEC---CCSSCEEEE--EE-CTTSSCEEEEETTSCEEEEC
T ss_pred EEEEc---CCCCCEEEE--EE-eCCCCEEEEEccCCEEEEeC
Confidence 44443 677777666 66 89999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.1e-28 Score=209.22 Aligned_cols=231 Identities=15% Similarity=0.200 Sum_probs=180.8
Q ss_pred CccCCCCceeeeeeCCC--------------CCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE
Q 036605 1 IWSTNDGSLLAEWKQPD--------------GEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW 66 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~--------------~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~ 66 (340)
|||+.+|+++..+.... ..|...|++++|+|+++ +|++|+.||.|++||...++...
T Consensus 87 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~---------~l~s~~~dg~v~i~~~~~~~~~~ 157 (388)
T d1erja_ 87 VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK---------FLATGAEDRLIRIWDIENRKIVM 157 (388)
T ss_dssp EEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC---------cceeccccccccccccccccccc
Confidence 69999988876664220 24667799999999999 99999999999999999999998
Q ss_pred EecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCC
Q 036605 67 KSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLEN 144 (340)
Q Consensus 67 ~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~ 144 (340)
.+.+ |...|.+++|++++..+++++.++.+++||..+.........+...+....+.+++.++++++. .|++||+.+
T Consensus 158 ~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 236 (388)
T d1erja_ 158 ILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 236 (388)
T ss_dssp EECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred cccc-ccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeeccc
Confidence 8888 9999999999999999999999999999999998887777665555444444557888888654 499999999
Q ss_pred CceeEEe-------ecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCcc-------CCceeeecCCCeeeeee
Q 036605 145 GEEVLKF-------SDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVN-------KGPALSMRHSPVAIDCK 210 (340)
Q Consensus 145 ~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 210 (340)
+..+..+ .+|...|.+++|+|++.+|++++. |+.|++||++....... ........|...+..+
T Consensus 237 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 314 (388)
T d1erja_ 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV- 314 (388)
T ss_dssp CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET-TSEEEEEEC---------------CEEEEEECCSSCEEEE-
T ss_pred CccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC-CCcEEEEeccCCccccccccccccceeeecccccceEEEE-
Confidence 8776554 457889999999999999999888 99999999842221110 0111122344555555
Q ss_pred cCCCCCCCCEEEEEeCCCcEEEEECCCCCccCCCC
Q 036605 211 NSPNGEDGTVILAVAESGVAYSWDLKTVSQDEKTN 245 (340)
Q Consensus 211 ~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~ 245 (340)
.+ ++++.+|++|+.||.|++||+.+++.+..++
T Consensus 315 -~~-s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~ 347 (388)
T d1erja_ 315 -AT-TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347 (388)
T ss_dssp -EE-CGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred -EE-CCCCCEEEEEeCCCEEEEEECCCCcEEEEEe
Confidence 55 7899999999999999999999887765443
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=3.6e-28 Score=203.67 Aligned_cols=209 Identities=13% Similarity=0.135 Sum_probs=180.3
Q ss_pred cCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEe
Q 036605 3 STNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFA 82 (340)
Q Consensus 3 d~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~ 82 (340)
+.........+. .|...+.++.|+|++. .+++++.|+.+.+||+.+++....+.. |...+.+++|+
T Consensus 87 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---------~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 152 (317)
T d1vyhc1 87 DFQGFECIRTMH----GHDHNVSSVSIMPNGD---------HIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPN 152 (317)
T ss_dssp ETTSSCEEECCC----CCSSCEEEEEECSSSS---------EEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEC
T ss_pred cccccccccccc----cccccceeeeccCCCc---------eEEeeccCcceeEeecccceeeeEEcc-CCCcceeeecc
Confidence 334444444444 6889999999999998 899999999999999999999988988 99999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCC--------------------CEEEEec--CcEEEE
Q 036605 83 KKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEE--------------------KIFALAS--SEVRIL 140 (340)
Q Consensus 83 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~--------------------~~l~~~~--~~i~i~ 140 (340)
+++..|++++.|+.|++|++.+++....+..+...+.+++++|++ .++++++ +.|++|
T Consensus 153 ~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 232 (317)
T d1vyhc1 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232 (317)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEE
Confidence 999999999999999999999999999999999999999998754 3455544 449999
Q ss_pred ECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCE
Q 036605 141 SLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTV 220 (340)
Q Consensus 141 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (340)
|+.+++.+..+.+|...|.+++|+|++++|++++. ||.|++||+ .+++....+. .|...+..+ .| ++++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~--~~~~~~~~~~---~h~~~V~~~--~~-s~~~~~ 303 (317)
T d1vyhc1 233 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLRVWDY--KNKRCMKTLN---AHEHFVTSL--DF-HKTAPY 303 (317)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET-TTEEEEECC--TTSCCCEEEE---CCSSCEEEE--EE-CSSSSC
T ss_pred ECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEEC-CCeEEEEEC--CCCcEEEEEc---CCCCCEEEE--EE-cCCCCE
Confidence 99999999999999999999999999999999888 999999999 4555544444 677677666 66 899999
Q ss_pred EEEEeCCCcEEEEE
Q 036605 221 ILAVAESGVAYSWD 234 (340)
Q Consensus 221 l~~~s~dg~i~vwd 234 (340)
|++|+.||.|+|||
T Consensus 304 l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 304 VVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEETTSEEEEEC
T ss_pred EEEEeCCCeEEEeC
Confidence 99999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.1e-27 Score=207.68 Aligned_cols=208 Identities=16% Similarity=0.236 Sum_probs=163.9
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-----------------CCCCCeEEEEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-----------------RHPGGLAGLAF 81 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-----------------~h~~~v~~v~~ 81 (340)
+|...|+|++|+|+|+ +||+|+ |+.|+|||+.+++.+..+.. .|...|++++|
T Consensus 60 ~H~~~V~~l~fs~dg~---------~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~ 129 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGE---------YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF 129 (388)
T ss_dssp ECSSCCCEEEECTTSS---------EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE
T ss_pred CCCCcEEEEEECCCCC---------EEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEE
Confidence 5899999999999999 999987 89999999999887766532 26667999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeE
Q 036605 82 AKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQ 159 (340)
Q Consensus 82 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~ 159 (340)
+|++++|++|+.||.|++||...++.+..+.+|...|.++++++++..+++++.+ +++||+.+.........+...+.
T Consensus 130 s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 209 (388)
T d1erja_ 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209 (388)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred CCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999998886544 99999999877776666555555
Q ss_pred EEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCc----eeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 160 YVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGP----ALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 160 ~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
...+.+++.+|++++. |+.|++|+++ .+.....+ .....|...+..+ .+ ++++.+|++++.||.|++||+
T Consensus 210 ~~~~~~~~~~l~~~~~-d~~i~i~~~~--~~~~~~~~~~~~~~~~~h~~~v~~l--~~-s~~~~~l~s~~~d~~i~iwd~ 283 (388)
T d1erja_ 210 VAVSPGDGKYIAAGSL-DRAVRVWDSE--TGFLVERLDSENESGTGHKDSVYSV--VF-TRDGQSVVSGSLDRSVKLWNL 283 (388)
T ss_dssp EEECSTTCCEEEEEET-TSCEEEEETT--TCCEEEEEC------CCCSSCEEEE--EE-CTTSSEEEEEETTSEEEEEEC
T ss_pred ccccCCCCCeEEEEcC-CCeEEEeecc--cCccceeeccccccccCCCCCEEEE--EE-CCCCCEEEEEECCCcEEEEec
Confidence 5555668888998777 9999999984 33222111 1112345555555 55 789999999999999999999
Q ss_pred CCCCccC
Q 036605 236 KTVSQDE 242 (340)
Q Consensus 236 ~~~~~~~ 242 (340)
.+.....
T Consensus 284 ~~~~~~~ 290 (388)
T d1erja_ 284 QNANNKS 290 (388)
T ss_dssp -------
T ss_pred cCCcccc
Confidence 8765443
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=2.2e-28 Score=211.45 Aligned_cols=213 Identities=12% Similarity=0.021 Sum_probs=167.4
Q ss_pred CccCCCCce--eeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE--EecCCCCCCe
Q 036605 1 IWSTNDGSL--LAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW--KSTGRHPGGL 76 (340)
Q Consensus 1 vwd~~~g~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~h~~~v 76 (340)
|||+.+++. ...+. +|..+|++++|+|+++ +|++|+.|++|++||+.++.... .+.+ |...|
T Consensus 33 iw~~~~~~~~~~~~l~----gH~~~V~~l~fsp~~~---------~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~~v 98 (371)
T d1k8kc_ 33 IYEKSGNKWVQVHELK----EHNGQVTGVDWAPDSN---------RIVTCGTDRNAYVWTLKGRTWKPTLVILR-INRAA 98 (371)
T ss_dssp EEEEETTEEEEEEEEE----CCSSCEEEEEEETTTT---------EEEEEETTSCEEEEEEETTEEEEEEECCC-CSSCE
T ss_pred EEECCCCCEEEEEEec----CCCCCEEEEEECCCCC---------EEEEEECCCeEEEEeeccccccccccccc-ccccc
Confidence 688887764 45566 8999999999999999 99999999999999999876443 3455 88999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCeE----EEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCC-----
Q 036605 77 AGLAFAKKGRSLHVVGTNGMASEMKSEMGEV----IREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENG----- 145 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~----- 145 (340)
.+++|+|+++.|++++.|+.|++|++..... ......|...|.+++|+|++.+|++++.+ |++||+...
T Consensus 99 ~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~ 178 (371)
T d1k8kc_ 99 RCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178 (371)
T ss_dssp EEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCC
T ss_pred cccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccc
Confidence 9999999999999999999999998766542 23345678899999999999999886554 999998643
Q ss_pred -------------ceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecC
Q 036605 146 -------------EEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNS 212 (340)
Q Consensus 146 -------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
..+.....|...|.+++|+|++++|++++. |+.|++||++ .+.....+. .|...+..+ .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-d~~i~iwd~~--~~~~~~~~~---~~~~~v~s~--~ 250 (371)
T d1k8kc_ 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-DSTVCLADAD--KKMAVATLA---SETLPLLAV--T 250 (371)
T ss_dssp CCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-TTEEEEEEGG--GTTEEEEEE---CSSCCEEEE--E
T ss_pred cccccccccccceeeeeeccCccCcEEEEEeeccccccccccc-CCcceEEeee--cccceeeee---cccccceee--e
Confidence 234556778899999999999999999887 9999999993 443333332 454455555 5
Q ss_pred CCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 213 PNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 213 ~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
| ++++.+|++| .|+.+++|....
T Consensus 251 f-s~d~~~la~g-~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 251 F-ITESSLVAAG-HDCFPVLFTYDS 273 (371)
T ss_dssp E-EETTEEEEEE-TTSSCEEEEEET
T ss_pred e-cCCCCEEEEE-cCCceEEEEeeC
Confidence 5 7888777665 477777766544
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=1.3e-27 Score=199.91 Aligned_cols=216 Identities=13% Similarity=0.100 Sum_probs=162.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee-------------EE-
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM-------------KW- 66 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-------------~~- 66 (340)
|||+.+|+.+..+. ..|...|++++|+|+++ +++++.|+.+++|+...... ..
T Consensus 38 vWd~~~~~~~~~~~---~~h~~~v~~v~~~~~g~----------~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d1nr0a2 38 SWDISTGISNRVFP---DVHATMITGIKTTSKGD----------LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 104 (299)
T ss_dssp EEETTTCCEEECSS---CSCSSCEEEEEECTTSC----------EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred EEECCCCcEEEEEc---CCCCCcEEEEEeeccce----------eecccceeeEEEeccCCccccccccccccccccccc
Confidence 69999999887775 36899999999999998 55566789999998543210 00
Q ss_pred -Ee------------------c------CCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEE-EeecCCCCeeE
Q 036605 67 -KS------------------T------GRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIR-EFKASEKPISS 120 (340)
Q Consensus 67 -~~------------------~------~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~ 120 (340)
.+ . ......+.+++|+|+++.|++++.||.|.+||+.+++... ....|...|.+
T Consensus 105 ~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~ 184 (299)
T d1nr0a2 105 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184 (299)
T ss_dssp EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 0 0023467889999999999999999999999998877544 34568889999
Q ss_pred EEEccCCCEEEEecCc--EEEEECCCCcee---EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCC
Q 036605 121 SAFLCEEKIFALASSE--VRILSLENGEEV---LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKG 195 (340)
Q Consensus 121 l~~~~~~~~l~~~~~~--i~i~d~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~ 195 (340)
++|+|++.++++++.+ |++||+.++..+ ..+..|...|.+++|+|++.+|++++. |+.|++||++ .+.....
T Consensus 185 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~-dg~i~iwd~~--~~~~~~~ 261 (299)
T d1nr0a2 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL-DNSVIVWNMN--KPSDHPI 261 (299)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETT--CTTSCCE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcC-CCEEEEEECC--CCCcceE
Confidence 9999999999886554 999999887655 345678999999999999999999888 9999999984 3322211
Q ss_pred ceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 196 PALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.. ...+....+.. .+ .+++.+|++++.||.|++||+.
T Consensus 262 ~~-~~~~~~~~v~~--~~-~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 262 II-KGAHAMSSVNS--VI-WLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EE-TTSSTTSCEEE--EE-EEETTEEEEEETTSCEEEEECC
T ss_pred EE-ecCCCCCcEEE--EE-ECCCCEEEEEeCCCEEEEEecc
Confidence 11 11222222222 22 3567899999999999999974
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.7e-27 Score=199.28 Aligned_cols=209 Identities=13% Similarity=0.124 Sum_probs=161.0
Q ss_pred CCCCCCeEEEEeecc--ccccccccCceEEEEEcCCCcEEEEEccCCee--------EEEecCCCCCCeEEEEEecCCCE
Q 036605 18 GEPVVSYSCLACGFV--GKKRRKERGTLLLALGTSNGDILAVDVLTGEM--------KWKSTGRHPGGLAGLAFAKKGRS 87 (340)
Q Consensus 18 ~~~~~~v~~l~~sp~--~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--------~~~~~~~h~~~v~~v~~~~~~~~ 87 (340)
+|+...|++++|+|+ ++ +|++|+.||+|+|||+..++. ...+.. |.++|.+++|+++++.
T Consensus 60 gh~~~~v~~v~fsP~~~g~---------~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~ 129 (325)
T d1pgua1 60 GHGSSVVTTVKFSPIKGSQ---------YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQV-LAGPISDISWDFEGRR 129 (325)
T ss_dssp TTTTSCEEEEEECSSTTCC---------EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEEC-CSSCEEEEEECTTSSE
T ss_pred CCCCCCEEEEEEeeCCCCC---------EEEEEeCCCCEEEeeecCCcceeeeeccccccccc-ccCcEEEEEECCCCCc
Confidence 355788999999984 47 899999999999999875431 123344 8899999999999999
Q ss_pred EEEEeC--CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCE-EEEe--cCcEEEEECCCCceeEEe---ecCCCCeE
Q 036605 88 LHVVGT--NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKI-FALA--SSEVRILSLENGEEVLKF---SDDVGPLQ 159 (340)
Q Consensus 88 l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~-l~~~--~~~i~i~d~~~~~~~~~~---~~~~~~v~ 159 (340)
|++++. ++.+.+|+..+++.+..+.+|...|.+++|+|++.+ ++++ ++.+++||+...+....+ ..|...|.
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~ 209 (325)
T d1pgua1 130 LCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR 209 (325)
T ss_dssp EEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred cceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccE
Confidence 888764 678999999999999999999999999999999876 4444 344999999888766554 45678899
Q ss_pred EEEECCC-CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 160 YVSASDG-AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 160 ~~~~s~~-~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
+++|+|+ +.+|++++. |+.|++||+ .+++....+. .|...+..+..+...+++.+|++++.||.|+|||+.++
T Consensus 210 ~v~~~pd~~~~l~s~~~-d~~i~iwd~--~~~~~~~~l~---~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~ 283 (325)
T d1pgua1 210 DVEFSPDSGEFVITVGS-DRKISCFDG--KSGEFLKYIE---DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS 283 (325)
T ss_dssp EEEECSTTCCEEEEEET-TCCEEEEET--TTCCEEEECC---BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred Eeeeccccceecccccc-ccceeeeee--cccccccccc---ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence 9999997 577788777 999999998 4444333332 33333222211111278899999999999999999887
Q ss_pred CccC
Q 036605 239 SQDE 242 (340)
Q Consensus 239 ~~~~ 242 (340)
+.+.
T Consensus 284 ~~~~ 287 (325)
T d1pgua1 284 KCVQ 287 (325)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6554
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6.3e-27 Score=198.48 Aligned_cols=201 Identities=12% Similarity=0.122 Sum_probs=157.1
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEc--CCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCE-EEEEeCCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGT--SNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRS-LHVVGTNG 95 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~dg 95 (340)
.|..+|.+++|+|+++ +|++++ .++.+.+|+..+++.+..+.+ |...|++++|+|++.. +++++.|+
T Consensus 113 ~~~~~v~~v~~s~~~~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~d~ 182 (325)
T d1pgua1 113 VLAGPISDISWDFEGR---------RLCVVGEGRDNFGVFISWDSGNSLGEVSG-HSQRINACHLKQSRPMRSMTVGDDG 182 (325)
T ss_dssp CCSSCEEEEEECTTSS---------EEEEEECCSSCSEEEEETTTCCEEEECCS-CSSCEEEEEECSSSSCEEEEEETTT
T ss_pred cccCcEEEEEECCCCC---------ccceeeccccceEEEEeecccccceeeee-cccccccccccccccceEEEeeccc
Confidence 5778999999999998 777665 467899999999999999988 9999999999998875 77899999
Q ss_pred cEEEEeCCCCeEEEEee---cCCCCeeEEEEccC-CCEEEEec--CcEEEEECCCCceeEEeecCCCCeEEEEEC---CC
Q 036605 96 MASEMKSEMGEVIREFK---ASEKPISSSAFLCE-EKIFALAS--SEVRILSLENGEEVLKFSDDVGPLQYVSAS---DG 166 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~---~~~~~i~~l~~~~~-~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s---~~ 166 (340)
.|++||..+++....+. .+...|.+++|+|+ +.++++++ +.|++||+++++.+..+.+|..++..+.|+ |+
T Consensus 183 ~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~d 262 (325)
T d1pgua1 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 262 (325)
T ss_dssp EEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESS
T ss_pred ccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccC
Confidence 99999999888766643 45677999999997 57777754 449999999999999999888887766665 78
Q ss_pred CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 167 AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 167 ~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
+++|++++. |+.|+|||+ ..++....+... .+......+.+.+ +.+.+|++++.||.|++||+
T Consensus 263 g~~l~s~s~-D~~i~iwd~--~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 263 SQKFATVGA-DATIRVWDV--TTSKCVQKWTLD-KQQLGNQQVGVVA--TGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp SSEEEEEET-TSEEEEEET--TTTEEEEEEECC-TTCGGGCEEEEEE--EETTEEEEEETTSCEEEEET
T ss_pred CCEEEEEeC-CCeEEEEEC--CCCCEEEEEEec-CCcccCeEEEEEE--CCCCEEEEEECCCEEEEEEC
Confidence 899999887 999999999 455443333211 1211122221133 33457899999999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5.2e-25 Score=186.30 Aligned_cols=212 Identities=14% Similarity=0.213 Sum_probs=159.4
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAF 81 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~ 81 (340)
|+....+....++ +|...|.+ +++++|+ +||+|+.||+|+|||+.+++.+..+.+ |.+.|.+++|
T Consensus 1 W~~~~~~~~~~l~----GH~~~V~s-~~~~~g~---------~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~ 65 (342)
T d2ovrb2 1 WRRGELKSPKVLK----GHDDHVIT-CLQFCGN---------RIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQM 65 (342)
T ss_dssp HHHSCCCCCEEEE----CSTTSCEE-EEEEETT---------EEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEE
T ss_pred CCCCCCCcCEEEC----CcCCceEE-EEEECCC---------EEEEEeCCCeEEEEECCCCCEEEEEeC-CCCCEEEEEe
Confidence 6766677777888 88888754 3666788 999999999999999999999999998 9999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCeEEE----------------------------------------------------
Q 036605 82 AKKGRSLHVVGTNGMASEMKSEMGEVIR---------------------------------------------------- 109 (340)
Q Consensus 82 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~---------------------------------------------------- 109 (340)
++ .+|++++.|+.+++|+........
T Consensus 66 ~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
T d2ovrb2 66 RD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 143 (342)
T ss_dssp ET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred CC--CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceee
Confidence 86 489999999999999865432111
Q ss_pred ----------------------------EeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEeecCCCCeE
Q 036605 110 ----------------------------EFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSDDVGPLQ 159 (340)
Q Consensus 110 ----------------------------~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~~~~v~ 159 (340)
.+..|. .....+.+++.++++++. .|++||++.++.+..+..|...+.
T Consensus 144 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~ 221 (342)
T d2ovrb2 144 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 221 (342)
T ss_dssp EECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS--SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred ccccceeeeecCCCeEEEeecccceeeEEEcCcc--cccccccCCCCEEEEEeCCCeEEEeecccceeeeEeccccccee
Confidence 011111 223345567788877554 499999999999999999999998
Q ss_pred EEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 160 YVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 160 ~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
++.+++ .+|++++. |+.|++||+. ..+....+.....|......+ ..++.++++|+.||.|++||+.+++
T Consensus 222 ~~~~~~--~~l~s~s~-d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~s~Dg~i~iwd~~tg~ 291 (342)
T d2ovrb2 222 GMELKD--NILVSGNA-DSTVKIWDIK--TGQCLQTLQGPNKHQSAVTCL-----QFNKNFVITSSDDGTVKLWDLKTGE 291 (342)
T ss_dssp EEEEET--TEEEEEET-TSCEEEEETT--TCCEEEEECSTTSCSSCEEEE-----EECSSEEEEEETTSEEEEEETTTCC
T ss_pred EEecCC--CEEEEEcC-CCEEEEEecc--cccccccccccceeeeceeec-----ccCCCeeEEEcCCCEEEEEECCCCC
Confidence 888765 58898887 9999999983 332222222111333344444 4567899999999999999999887
Q ss_pred ccC
Q 036605 240 QDE 242 (340)
Q Consensus 240 ~~~ 242 (340)
.+.
T Consensus 292 ~i~ 294 (342)
T d2ovrb2 292 FIR 294 (342)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.4e-24 Score=177.21 Aligned_cols=197 Identities=15% Similarity=0.210 Sum_probs=150.2
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
.|...|+|++| +++ +||+|+.||+|+|||+.+++.+..+.+ |.+.|++++| ++++|++|+.|+.|+
T Consensus 13 ~~~~~V~c~~~--d~~---------~l~sgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~v~~--~~~~l~s~s~D~~i~ 78 (293)
T d1p22a2 13 ETSKGVYCLQY--DDQ---------KIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQY--DERVIITGSSDSTVR 78 (293)
T ss_dssp SSCCCEEEEEC--CSS---------EEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEEC--CSSEEEEEETTSCEE
T ss_pred CCCCCEEEEEE--cCC---------EEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEeeeec--ccceeeccccccccc
Confidence 67788999765 688 899999999999999999999999998 9999999987 578999999999999
Q ss_pred EEeCCCCeEEEEe-------------------------------------------ecCCCCeeEEEEccCCCEEEEecC
Q 036605 99 EMKSEMGEVIREF-------------------------------------------KASEKPISSSAFLCEEKIFALASS 135 (340)
Q Consensus 99 ~wd~~~~~~~~~~-------------------------------------------~~~~~~i~~l~~~~~~~~l~~~~~ 135 (340)
+|++..+...... ..|...+..+.+.+......+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~ 158 (293)
T d1p22a2 79 VWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR 158 (293)
T ss_dssp EEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred ccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCC
Confidence 9998766433221 123334444444443333333555
Q ss_pred cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCC
Q 036605 136 EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNG 215 (340)
Q Consensus 136 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (340)
.+++||+.+++.+..+.++...+..+.++ +.++++++. |+.|++||++ ......... .+...+... .
T Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-dg~i~i~d~~--~~~~~~~~~---~~~~~v~~~-----~ 225 (293)
T d1p22a2 159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS-DNTIRLWDIE--CGACLRVLE---GHEELVRCI-----R 225 (293)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET-TSCEEEEETT--TCCEEEEEC---CCSSCEEEE-----E
T ss_pred ceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC-CCEEEEEecc--cceeeeeec---ccceeeeec-----c
Confidence 69999999999999999999998888775 458888777 9999999984 433322222 444444444 5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 216 EDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 216 ~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+++.+|++++.||.|++||+.......
T Consensus 226 ~~~~~l~sg~~dg~i~iwd~~~~~~~~ 252 (293)
T d1p22a2 226 FDNKRIVSGAYDGKIKVWDLVAALDPR 252 (293)
T ss_dssp CCSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred ccceEEEEEcCCCEEEEEECCCCcccc
Confidence 678899999999999999988755444
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.2e-23 Score=178.73 Aligned_cols=215 Identities=13% Similarity=0.128 Sum_probs=156.5
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-CCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-RHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-~h~~~v~~v 79 (340)
|||+.+++++.++. +|...|++++|+|+ . +|++|+.||.|++|+....+....... .+.......
T Consensus 37 vWd~~~~~~~~~l~----~H~~~V~~l~~s~~-~---------~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 102 (355)
T d1nexb2 37 VYDSINKKFLLQLS----GHDGGVWALKYAHG-G---------ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 102 (355)
T ss_dssp EEETTTTEEEEEEE----CCSSCEEEEEEETT-T---------EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEECCCCcEEEEEE----CCCCCEEEEEEcCC-C---------EEEEEeccccccccccccccccccccccccccccccc
Confidence 69999999999998 89999999999985 4 599999999999999988876555443 122223444
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCC--------------------------------------------------------
Q 036605 80 AFAKKGRSLHVVGTNGMASEMKSE-------------------------------------------------------- 103 (340)
Q Consensus 80 ~~~~~~~~l~s~~~dg~i~~wd~~-------------------------------------------------------- 103 (340)
.+.+++..+++++.|+.|++||+.
T Consensus 103 ~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~ 182 (355)
T d1nexb2 103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182 (355)
T ss_dssp EEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSC
T ss_pred ccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccce
Confidence 555566666666666666666654
Q ss_pred -------CCeEEEEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEE
Q 036605 104 -------MGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAG 174 (340)
Q Consensus 104 -------~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 174 (340)
+++.+..+..+...+.++.++|++..+++++. .|++||+.++..+..+.+|...|.++.|++ ++|++++
T Consensus 183 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~ 260 (355)
T d1nexb2 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAA 260 (355)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEEC
T ss_pred eeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeee
Confidence 33334444455667788899999999887554 499999999999999999999999999975 5888877
Q ss_pred cCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 175 YGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 175 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
. |+.|++||++ .... .+. .|...+..+ .+.++++.++++| .||.|++||+++++.+.
T Consensus 261 ~-dg~i~iwd~~--~~~~--~~~---~~~~~~~~~--~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~ 317 (355)
T d1nexb2 261 A-DGSIRGWDAN--DYSR--KFS---YHHTNLSAI--TTFYVSDNILVSG-SENQFNIYNLRSGKLVH 317 (355)
T ss_dssp T-TSEEEEEETT--TCCE--EEE---EECTTCCCC--CEEEECSSEEEEE-ETTEEEEEETTTCCBCC
T ss_pred c-cccccccccc--ccce--ecc---cccCCceEE--EEEcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 7 9999999983 3221 112 222222222 2225677766665 58999999999988764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.1e-23 Score=177.15 Aligned_cols=198 Identities=15% Similarity=0.191 Sum_probs=146.7
Q ss_pred CCCCC-eEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 19 EPVVS-YSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 19 ~~~~~-v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
+|... ++|++| +++ +||+|+.||+|++||+.+++.+..+.+ |.+.|++++|+|+ ..|++|+.|+.|
T Consensus 10 GH~~~vitc~~~--~~~---------~l~tgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~l~~s~~-~~l~s~s~D~~i 76 (355)
T d1nexb2 10 GHMTSVITCLQF--EDN---------YVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHG-GILVSGSTDRTV 76 (355)
T ss_dssp CCSSSCEEEEEE--ETT---------EEEEEETTTEEEEEETTTTEEEEEEEC-CSSCEEEEEEETT-TEEEEEETTCCE
T ss_pred CcCCCcEEEEEE--CCC---------EEEEEeCCCeEEEEECCCCcEEEEEEC-CCCCEEEEEEcCC-CEEEEEeccccc
Confidence 67766 477655 578 899999999999999999999999998 9999999999985 589999999999
Q ss_pred EEEeCCCCeEEEEeecCCCC--eeEEEEc---------------------------------------------------
Q 036605 98 SEMKSEMGEVIREFKASEKP--ISSSAFL--------------------------------------------------- 124 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~~~~~--i~~l~~~--------------------------------------------------- 124 (340)
++|+................ .....+.
T Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (355)
T d1nexb2 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156 (355)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeee
Confidence 99999877654332221111 1122222
Q ss_pred ------------cCCCEEEEecC--cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCC
Q 036605 125 ------------CEEKIFALASS--EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSK 190 (340)
Q Consensus 125 ------------~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~ 190 (340)
+++.+++++.. .+++||+.+++.+..+.++...+.++.|++++.++++++. |+.|++||+ .++
T Consensus 157 ~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~--~~~ 233 (355)
T d1nexb2 157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM-DTTIRIWDL--ENG 233 (355)
T ss_dssp EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET-TSCEEEEET--TTC
T ss_pred eeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccc-cceEEeeec--ccc
Confidence 33444444332 2666666666666666777888899999999999999887 999999998 444
Q ss_pred CccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCc
Q 036605 191 TVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~ 240 (340)
.....+. .|...+..+ ..++.+|++++.||.|++||+.+..+
T Consensus 234 ~~~~~~~---~h~~~v~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~ 275 (355)
T d1nexb2 234 ELMYTLQ---GHTALVGLL-----RLSDKFLVSAAADGSIRGWDANDYSR 275 (355)
T ss_dssp CEEEEEC---CCSSCCCEE-----EECSSEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccc---ccccccccc-----ccccceeeeeecccccccccccccce
Confidence 4433333 555555555 33567999999999999999987543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.92 E-value=4e-23 Score=176.42 Aligned_cols=166 Identities=11% Similarity=0.043 Sum_probs=139.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCC--CcEEEEEccCCeeEEEecCCCCCCeEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSN--GDILAVDVLTGEMKWKSTGRHPGGLAG 78 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~~~~~~~h~~~v~~ 78 (340)
|||...|...+ + .|...|.+++|+|||+ +|++++.+ ..|++||+.+++.. .+.. |.+.|.+
T Consensus 28 v~d~~~~~~~~-~-----~~~~~v~~~~~spDg~---------~l~~~~~~~g~~v~v~d~~~~~~~-~~~~-~~~~v~~ 90 (360)
T d1k32a3 28 IQDVSGTYVLK-V-----PEPLRIRYVRRGGDTK---------VAFIHGTREGDFLGIYDYRTGKAE-KFEE-NLGNVFA 90 (360)
T ss_dssp EECTTSSBEEE-C-----SCCSCEEEEEECSSSE---------EEEEEEETTEEEEEEEETTTCCEE-ECCC-CCCSEEE
T ss_pred EEECCCCcEEE-c-----cCCCCEEEEEECCCCC---------EEEEEEcCCCCEEEEEECCCCcEE-EeeC-CCceEEe
Confidence 58888777654 2 4788999999999998 77766544 37999999988654 5666 9999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec------------CcEEEEECCCCc
Q 036605 79 LAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS------------SEVRILSLENGE 146 (340)
Q Consensus 79 v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~------------~~i~i~d~~~~~ 146 (340)
++|+|++++|++++.++.+.+|++.+++....+..+...+.+++|+|+|++|+.+. +.+++||+.+++
T Consensus 91 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~ 170 (360)
T d1k32a3 91 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 170 (360)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred eeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc
Confidence 99999999999999999999999999999888888988999999999999997521 128999999885
Q ss_pred eeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 147 EVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 147 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
. ..+..+...+..+.|+|+|++|++++. ++.+.+|+.
T Consensus 171 ~-~~~~~~~~~~~~~~~spdg~~l~~~s~-~~~~~~~d~ 207 (360)
T d1k32a3 171 I-FAATTENSHDYAPAFDADSKNLYYLSY-RSLDPSPDR 207 (360)
T ss_dssp E-EECSCSSSBEEEEEECTTSCEEEEEES-CCCCCEECS
T ss_pred e-eeecccccccccccccCCCCEEEEEeC-CCceEcccc
Confidence 5 444556778889999999999999887 888888875
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.7e-22 Score=166.84 Aligned_cols=207 Identities=16% Similarity=0.231 Sum_probs=157.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEec-----------
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKST----------- 69 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~----------- 69 (340)
|||+.+++++..+. +|...|+|++| +++ +|++|+.||.|++|++..+.......
T Consensus 39 vWd~~~~~~~~~l~----~H~~~V~~v~~--~~~---------~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (293)
T d1p22a2 39 IWDKNTLECKRILT----GHTGSVLCLQY--DER---------VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 103 (293)
T ss_dssp EEESSSCCEEEEEC----CCSSCEEEEEC--CSS---------EEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC
T ss_pred EEECCCCcEEEEEe----cCCCCEeeeec--ccc---------eeecccccccccccccccccccccccccccccccccc
Confidence 69999999999998 89999999987 467 89999999999999987654332220
Q ss_pred -------------------------------CCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCe
Q 036605 70 -------------------------------GRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPI 118 (340)
Q Consensus 70 -------------------------------~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i 118 (340)
..|...|..+.+. ...+++++.|+.|++||+.+++.+..+.++...+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v 181 (293)
T d1p22a2 104 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181 (293)
T ss_dssp CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred cccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEccccccc
Confidence 1255566666554 4578889999999999999999999999888888
Q ss_pred eEEEEccCCCEEEEe--cCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCcc---
Q 036605 119 SSSAFLCEEKIFALA--SSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVN--- 193 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~--~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~--- 193 (340)
..+.++ +..++++ ++.|++||+++...+..+.+|...+.. +++++.+|++++. |+.|++||++.......
T Consensus 182 ~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~ 256 (293)
T d1p22a2 182 ACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAY-DGKIKVWDLVAALDPRAPAG 256 (293)
T ss_dssp EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEET-TSCEEEEEHHHHTSTTSCTT
T ss_pred ccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcC-CCEEEEEECCCCccccccCC
Confidence 877765 4567664 455999999999999999888888765 4567789999887 99999999842221110
Q ss_pred -CCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 194 -KGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 194 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
........|...+..+ ..++.+|++++.||.|++||
T Consensus 257 ~~~~~~~~~H~~~V~~v-----~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 257 TLCLRTLVEHSGRVFRL-----QFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TTEEEEECCCSSCCCCE-----EECSSCEEECCSSSEEEEEC
T ss_pred ceeeEEecCCCCCEEEE-----EEcCCEEEEEecCCEEEEeC
Confidence 0111112566556555 33567899999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.9e-23 Score=181.46 Aligned_cols=183 Identities=12% Similarity=0.134 Sum_probs=144.9
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC-----CCCCCeEEEEEecCCCEEEEEeC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG-----RHPGGLAGLAFAKKGRSLHVVGT 93 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~l~s~~~ 93 (340)
.+...++|++|+|++. ||+|+.||+|++||+.+++.+..+.. .|...|++++|+|++++|++|+.
T Consensus 182 ~~~~~~~~v~~s~dg~----------lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~ 251 (393)
T d1sq9a_ 182 TPSQFATSVDISERGL----------IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD 251 (393)
T ss_dssp SSCCCCCEEEECTTSE----------EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE
T ss_pred CCCCcEEEEEECCCCE----------EEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecC
Confidence 4556689999999866 89999999999999999987665532 38899999999999999999998
Q ss_pred CC---cEEEEeCCCCeEEEEee-------------cCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCC
Q 036605 94 NG---MASEMKSEMGEVIREFK-------------ASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 94 dg---~i~~wd~~~~~~~~~~~-------------~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~ 155 (340)
|+ .|++||+.+++.+..+. +|...|++++|+|++++|++++.+ |++||+.+++.+..+.+|.
T Consensus 252 D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~ 331 (393)
T d1sq9a_ 252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331 (393)
T ss_dssp ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcC
Confidence 86 48999999998877653 688999999999999999997655 9999999999999999999
Q ss_pred CCeE----EEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEE
Q 036605 156 GPLQ----YVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAY 231 (340)
Q Consensus 156 ~~v~----~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~ 231 (340)
..|. .++|++++..++++ +...++.+ ..+.... .. ......+++++.|+.|+
T Consensus 332 ~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~-----------------~~-~~~~~~~~~~~~d~~ir 387 (393)
T d1sq9a_ 332 DDIEIEEDILAVDEHGDSLAEP----GVFDVKFL--KKGWRSG-----------------MG-ADLNESLCCVCLDRSIR 387 (393)
T ss_dssp GGCSSGGGCCCBCTTSCBCSSC----CEEEEEEE--CTTTSBS-----------------TT-CTTSCEEEEEETTTEEE
T ss_pred CcccCCccEEEECCCCCEEEEc----ccceEEEC--ccCceec-----------------cc-cCCCCEEEEEEcCCeEE
Confidence 8775 58899999877652 32333333 1111100 00 23345688999999999
Q ss_pred EEEC
Q 036605 232 SWDL 235 (340)
Q Consensus 232 vwd~ 235 (340)
+|.-
T Consensus 388 ~~~~ 391 (393)
T d1sq9a_ 388 WFRE 391 (393)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9963
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.5e-22 Score=167.99 Aligned_cols=180 Identities=12% Similarity=0.139 Sum_probs=132.4
Q ss_pred EEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEc
Q 036605 45 LALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPISSSAFL 124 (340)
Q Consensus 45 l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~ 124 (340)
+++++.|+.|++||....+.+..+.+ |...+..+. +++..|++++.||.|++||++.++.+..+..|...+.+++++
T Consensus 150 ~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~ 226 (342)
T d2ovrb2 150 VVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226 (342)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEECC-CSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE
T ss_pred eeeecCCCeEEEeecccceeeEEEcC-ccccccccc--CCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC
Confidence 44555556666666665555555665 666655554 468899999999999999999999999999999999888776
Q ss_pred cCCCEEEEecC--cEEEEECCCCceeEEeec---CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceee
Q 036605 125 CEEKIFALASS--EVRILSLENGEEVLKFSD---DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALS 199 (340)
Q Consensus 125 ~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~ 199 (340)
+ .++++++. .|++||+...+....+.. |...+.++.++ +.++++++. ||.|++||+ .+++....+...
T Consensus 227 ~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~-Dg~i~iwd~--~tg~~i~~~~~~ 299 (342)
T d2ovrb2 227 D--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD-DGTVKLWDL--KTGEFIRNLVTL 299 (342)
T ss_dssp T--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEET-TSEEEEEET--TTCCEEEEEEEC
T ss_pred C--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcC-CCEEEEEEC--CCCCEEEEEecc
Confidence 5 57777554 499999999887777754 45666666665 468888887 999999999 455544333211
Q ss_pred --ecCCCeeeeeecCCCCCCCCEEEEEeCCCc----EEEEECCC
Q 036605 200 --MRHSPVAIDCKNSPNGEDGTVILAVAESGV----AYSWDLKT 237 (340)
Q Consensus 200 --~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~----i~vwd~~~ 237 (340)
..|...+..+ .+ +|++.++++|+.||. |++||+..
T Consensus 300 ~~~~~~~~v~~v--~~-s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 300 ESGGSGGVVWRI--RA-SNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp TTGGGTCEEEEE--EE-CSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cCCCCCCCEEEE--EE-CCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 1344455555 56 789999999999985 99999863
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=2.4e-22 Score=169.38 Aligned_cols=210 Identities=11% Similarity=0.025 Sum_probs=139.7
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE---EecCCCCCCeEEEEEecCC-CEEEEEeCC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW---KSTGRHPGGLAGLAFAKKG-RSLHVVGTN 94 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~---~~~~~h~~~v~~v~~~~~~-~~l~s~~~d 94 (340)
+|+..|++|+|+|+++ +||+|+.||+|+|||+.++.... ...+ |.++|.+++|+|++ ..|++|+.|
T Consensus 9 ~h~d~I~~l~fsp~~~---------~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~-h~~~V~~v~f~~~~~~~l~sg~~d 78 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKS---------LLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQ 78 (342)
T ss_dssp CCSSCEEEEEEEGGGT---------EEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETT
T ss_pred CCCCCEEEEEEeCCCC---------EEEEEECCCeEEEEEccCCCcceEEEEecC-CCCCEEEEEEeCCCCCEEEEcccc
Confidence 8999999999999999 99999999999999998764322 2234 99999999999865 579999999
Q ss_pred CcEEEEeCCCCeEEEEeecCCC-------------------------------------------------CeeEEEEcc
Q 036605 95 GMASEMKSEMGEVIREFKASEK-------------------------------------------------PISSSAFLC 125 (340)
Q Consensus 95 g~i~~wd~~~~~~~~~~~~~~~-------------------------------------------------~i~~l~~~~ 125 (340)
|.|++|++..+........+.. ....+.+.+
T Consensus 79 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (342)
T d1yfqa_ 79 GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence 9999999876543322211111 112233445
Q ss_pred CCCEEEEe--cCcEEEEECCCCceeEE---eecCCCCeEEEEE-CCCCCEEEEEEcCCCeEEEEEccCCCCCccCCce--
Q 036605 126 EEKIFALA--SSEVRILSLENGEEVLK---FSDDVGPLQYVSA-SDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA-- 197 (340)
Q Consensus 126 ~~~~l~~~--~~~i~i~d~~~~~~~~~---~~~~~~~v~~~~~-s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~-- 197 (340)
.+..++++ ++.|++||+........ ...+...+....+ +.++..+++++. |+.+.+|+++...........
T Consensus 159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~v~~~~~~~~~~~~~~~~~ 237 (342)
T d1yfqa_ 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI-DGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-TSEEEEEECCTTCCSTTCTTCEE
T ss_pred cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC-CCeEEEEEecCCcceeeccccce
Confidence 55555543 34488888766544322 2233344555555 445667777666 999999998532221111100
Q ss_pred e--------eecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 198 L--------SMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 198 ~--------~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+ ...+...+..+ .| +|++.+|++|+.||.|++||+.+++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~v~~l--~~-sp~~~~lasg~~Dg~v~vWD~~~~~~l~ 287 (342)
T d1yfqa_ 238 FRCHRLNLKDTNLAYPVNSI--EF-SPRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEE--EE-CTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred eeeeeeccCCCcccccceeE--Ee-cCCccEEEEECCCCEEEEEECCCCcEEE
Confidence 0 01222223333 55 8999999999999999999999876554
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=5.8e-23 Score=178.43 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=143.1
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe---------------eEEEe--cCCCCCCeEEEEEe
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE---------------MKWKS--TGRHPGGLAGLAFA 82 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~---------------~~~~~--~~~h~~~v~~v~~~ 82 (340)
+...+..++|.+++.. ....++++++.||+|.+|++.... ..... ...+...+++++|+
T Consensus 118 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 193 (393)
T d1sq9a_ 118 KKHSFWALKWGASNDR----LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 193 (393)
T ss_dssp GGSCEEEEEEECCC--------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC
T ss_pred CCCceEEEEEecCCCc----ccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEEC
Confidence 3355677777765420 011278999999999999975321 11111 11356678999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeEEEEe------ecCCCCeeEEEEccCCCEEEEecCc-----EEEEECCCCceeEEe
Q 036605 83 KKGRSLHVVGTNGMASEMKSEMGEVIREF------KASEKPISSSAFLCEEKIFALASSE-----VRILSLENGEEVLKF 151 (340)
Q Consensus 83 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~------~~~~~~i~~l~~~~~~~~l~~~~~~-----i~i~d~~~~~~~~~~ 151 (340)
|++ +|++|+.|+.|++||+.+++.+..+ .+|..+|.+++|+|+|++|++++.+ |++||+.+++.+..+
T Consensus 194 ~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l 272 (393)
T d1sq9a_ 194 ERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272 (393)
T ss_dssp TTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred CCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeee
Confidence 987 8999999999999999999887654 4578899999999999999997543 999999998877665
Q ss_pred e-------------cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeee--ecCCCCC
Q 036605 152 S-------------DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDC--KNSPNGE 216 (340)
Q Consensus 152 ~-------------~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 216 (340)
. +|...|++++|+|++++|++++. |++|+|||+ .+++....+. +|...+... ...+ .+
T Consensus 273 ~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~-D~~v~vWd~--~~g~~~~~l~---gH~~~v~~~~~~~~~-~~ 345 (393)
T d1sq9a_ 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDV--KTKERITTLN---MHCDDIEIEEDILAV-DE 345 (393)
T ss_dssp CBC--------CCBSBSSCEEEEEECSSSSEEEEEET-TSEEEEEET--TTTEEEEEEE---CCGGGCSSGGGCCCB-CT
T ss_pred ccccccccceeeeecccCceeeeccCCCCCeeEEECC-CCEEEEEEC--CCCCEEEEEC---CcCCcccCCccEEEE-CC
Confidence 3 79999999999999999999888 999999999 5665555444 565444321 1134 77
Q ss_pred CCCEEEEEe
Q 036605 217 DGTVILAVA 225 (340)
Q Consensus 217 ~~~~l~~~s 225 (340)
++..+++++
T Consensus 346 ~~~~~~~~~ 354 (393)
T d1sq9a_ 346 HGDSLAEPG 354 (393)
T ss_dssp TSCBCSSCC
T ss_pred CCCEEEEcc
Confidence 777765443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.88 E-value=2.3e-21 Score=165.33 Aligned_cols=191 Identities=12% Similarity=0.084 Sum_probs=151.4
Q ss_pred EEEeec-cccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCC--cEEEEeC
Q 036605 26 CLACGF-VGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG--MASEMKS 102 (340)
Q Consensus 26 ~l~~sp-~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg--~i~~wd~ 102 (340)
.-.||| ||+ ++|+++ +|.|++||+.++.... + . |...|.+++|+|||+.|++++.+. .|++||.
T Consensus 7 ~~~fSP~dG~---------~~a~~~-~g~v~v~d~~~~~~~~-~-~-~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~ 73 (360)
T d1k32a3 7 AEDFSPLDGD---------LIAFVS-RGQAFIQDVSGTYVLK-V-P-EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY 73 (360)
T ss_dssp EEEEEECGGG---------CEEEEE-TTEEEEECTTSSBEEE-C-S-CCSCEEEEEECSSSEEEEEEEETTEEEEEEEET
T ss_pred cccccCCCCC---------EEEEEE-CCeEEEEECCCCcEEE-c-c-CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEEC
Confidence 467999 898 788775 6799999998887554 3 4 899999999999999998877553 7899999
Q ss_pred CCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc-----
Q 036605 103 EMGEVIREFKASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY----- 175 (340)
Q Consensus 103 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----- 175 (340)
.+++.. .+..|...+.+++|+|++++|++++.+ +++|++.+++....+..|...+.+++|+|+|++|+.+..
T Consensus 74 ~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~ 152 (360)
T d1k32a3 74 RTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 152 (360)
T ss_dssp TTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred CCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccc
Confidence 988754 567788999999999999999886555 999999999888888889999999999999999987543
Q ss_pred ----CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCC
Q 036605 176 ----GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVS 239 (340)
Q Consensus 176 ----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~ 239 (340)
.++.+++|++ ..++..... .+......+ .+ +++|.+|++++.++.+.+|+.....
T Consensus 153 ~~~~~~~~~~v~d~--~~~~~~~~~----~~~~~~~~~--~~-spdg~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 153 TDGYVMQAIHVYDM--EGRKIFAAT----TENSHDYAP--AF-DADSKNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp TCSCCEEEEEEEET--TTTEEEECS----CSSSBEEEE--EE-CTTSCEEEEEESCCCCCEECSSSSC
T ss_pred eeeccccceeeecc--ccCceeeec----ccccccccc--cc-cCCCCEEEEEeCCCceEcccccccc
Confidence 2456899998 333221111 222222222 45 8999999999999999999976643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=8e-21 Score=157.29 Aligned_cols=166 Identities=10% Similarity=0.121 Sum_probs=131.8
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCC-CcEEEEEccCCeeEEEecCCCCCCeEEEE
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSN-GDILAVDVLTGEMKWKSTGRHPGGLAGLA 80 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d-g~i~i~d~~~~~~~~~~~~~h~~~v~~v~ 80 (340)
|+..+++....+. +... +.+++|++. .+++++.+ +.|++|++...+....+...|.+.+++++
T Consensus 106 ~~~~~~~~~~~~~-----~~~~--~~~~~~~~~---------~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~ 169 (287)
T d1pgua2 106 LQSFTGDIIKSVR-----LNSP--GSAVSLSQN---------YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS 169 (287)
T ss_dssp EETTTCCEEEEEE-----CSSC--EEEEEECSS---------EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEE
T ss_pred eeccceeeeeecc-----ccce--eeeeeccCc---------ceeeeccccceeeeeeccccceeeeeeeccCCceeEEE
Confidence 5556666666555 2233 345677776 67777666 57999998877766666655888999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeEEEE-eecCCCCeeEEEEccCC----------CEEEEecC--cEEEEECCC-Cc
Q 036605 81 FAKKGRSLHVVGTNGMASEMKSEMGEVIRE-FKASEKPISSSAFLCEE----------KIFALASS--EVRILSLEN-GE 146 (340)
Q Consensus 81 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~i~~l~~~~~~----------~~l~~~~~--~i~i~d~~~-~~ 146 (340)
|+|++.+|++++.||.|++||+.++..... +..|...|.+++|+|.+ .++++++. .|++||++. ++
T Consensus 170 ~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~ 249 (287)
T d1pgua2 170 ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK 249 (287)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC
T ss_pred eccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe
Confidence 999999999999999999999999887654 67888999999998754 57777654 499999977 44
Q ss_pred eeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 147 EVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 147 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
.+..+.+|...|++++|+|++ .|++++. |+.|++|++
T Consensus 250 ~~~~~~~h~~~V~~v~~~~~~-~l~s~g~-D~~v~iW~i 286 (287)
T d1pgua2 250 IIKALNAHKDGVNNLLWETPS-TLVSSGA-DACIKRWNV 286 (287)
T ss_dssp CEEETTSSTTCEEEEEEEETT-EEEEEET-TSCEEEEEE
T ss_pred EEEEeCCCCCCeEEEEECCCC-EEEEEEC-CCeEEEEEE
Confidence 556678899999999999987 6888888 999999996
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=3.4e-20 Score=156.38 Aligned_cols=217 Identities=14% Similarity=0.114 Sum_probs=164.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEE-EEEcCCCcEEEEEccCCeeEEEecCCCC-----C
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLL-ALGTSNGDILAVDVLTGEMKWKSTGRHP-----G 74 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~h~-----~ 74 (340)
|||+.+++++.++... .+...+.+++|+|||+ ++ ++++.++.|.+||+.+++.+..+.. +. .
T Consensus 15 v~D~~s~~~~~~i~~~--~~~~~~~~i~~spDg~---------~l~v~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~~ 82 (337)
T d1pbyb_ 15 VIDTEKMAVDKVITIA--DAGPTPMVPMVAPGGR---------IAYATVNKSESLVKIDLVTGETLGRIDL-STPEERVK 82 (337)
T ss_dssp EEETTTTEEEEEEECT--TCTTCCCCEEECTTSS---------EEEEEETTTTEEEEEETTTCCEEEEEEC-CBTTEEEE
T ss_pred EEECCCCeEEEEEECC--CCCCCccEEEECCCCC---------EEEEEECCCCeEEEEECCCCcEEEEEec-CCCccccc
Confidence 6999999999988744 4456688999999998 66 5778899999999999998887765 33 2
Q ss_pred CeEEEEEecCCCEEEEEe------------CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCcEEEEEC
Q 036605 75 GLAGLAFAKKGRSLHVVG------------TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSEVRILSL 142 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~------------~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~ 142 (340)
.+..++|+|+++.+++++ .+..+.+||..+++....+.. ...+..++++|+|++++++++++.+||.
T Consensus 83 ~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~d~ 161 (337)
T d1pbyb_ 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRDLHVMDP 161 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSSEEEEET
T ss_pred ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCCcceeee
Confidence 456789999999998876 356889999999998887764 4567899999999999999988999998
Q ss_pred CCCceeEEee------------------------------------------------------------------cCCC
Q 036605 143 ENGEEVLKFS------------------------------------------------------------------DDVG 156 (340)
Q Consensus 143 ~~~~~~~~~~------------------------------------------------------------------~~~~ 156 (340)
.+++....+. .+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (337)
T d1pbyb_ 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241 (337)
T ss_dssp TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS
T ss_pred ecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCc
Confidence 7665433221 1223
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 157 PLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 157 ~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.+..+.+++++.+++.. ++.|++||+ .+++..... ...+.+..+.+ +|||.+|++++.||.|++||..
T Consensus 242 ~~~~~~~~~~~~~~~~~---~~~i~v~d~--~~~~~~~~~--~~~~~~~~~~~-----s~dG~~l~v~~~~~~i~v~D~~ 309 (337)
T d1pbyb_ 242 FYFSTAVNPAKTRAFGA---YNVLESFDL--EKNASIKRV--PLPHSYYSVNV-----STDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp CEEEEEECTTSSEEEEE---ESEEEEEET--TTTEEEEEE--ECSSCCCEEEE-----CTTSCEEEEESBSSEEEEEETT
T ss_pred ceEEEEecccceEEEEc---cccEEEEEC--CCCcEEEEE--cCCCCEEEEEE-----CCCCCEEEEEeCCCcEEEEECC
Confidence 34455567777766552 579999998 454433322 22333333444 8999999999999999999999
Q ss_pred CCCccC
Q 036605 237 TVSQDE 242 (340)
Q Consensus 237 ~~~~~~ 242 (340)
+.+.+.
T Consensus 310 t~~~v~ 315 (337)
T d1pbyb_ 310 TLEKKG 315 (337)
T ss_dssp TCCEEE
T ss_pred CCcEEE
Confidence 887665
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=5.2e-20 Score=152.32 Aligned_cols=194 Identities=10% Similarity=0.072 Sum_probs=141.4
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC----------------------------------Cee
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT----------------------------------GEM 64 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~----------------------------------~~~ 64 (340)
.|...|.+++|++++. +++++.|++|++|++.. ++.
T Consensus 44 ~h~~~V~~~~~~~~~~----------~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
T d1pgua2 44 DHSNLIVSLDNSKAQE----------YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 113 (287)
T ss_dssp CCCSCEEEEECCSTTC----------CEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCE
T ss_pred CCCCCEEEEEecCCCe----------EEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceee
Confidence 6788899999987655 67777788887776542 222
Q ss_pred EEEecCCCCCCeEEEEEecCCCEEEEEeCCC-cEEEEeCCCCeEEEEee-cCCCCeeEEEEccCCCEEEEecC--cEEEE
Q 036605 65 KWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG-MASEMKSEMGEVIREFK-ASEKPISSSAFLCEEKIFALASS--EVRIL 140 (340)
Q Consensus 65 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~--~i~i~ 140 (340)
...+. +... ..++++++..+++++.++ .+++|++...+....+. .+...+++++|+|++.+|++++. .|++|
T Consensus 114 ~~~~~--~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~ 189 (287)
T d1pgua2 114 IKSVR--LNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY 189 (287)
T ss_dssp EEEEE--CSSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecc--ccce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccce
Confidence 22222 1122 345677788888887774 79999998776655544 46678999999999999988654 49999
Q ss_pred ECCCCceeE-EeecCCCCeEEEEECCC----------CCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeee
Q 036605 141 SLENGEEVL-KFSDDVGPLQYVSASDG----------AKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDC 209 (340)
Q Consensus 141 d~~~~~~~~-~~~~~~~~v~~~~~s~~----------~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (340)
|+.+++... .+..|...|.+++|+|. +.++++++. |+.|+|||++. ..+..... ..|...+..+
T Consensus 190 d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~-D~~i~iw~~~~-~~~~~~~~---~~h~~~V~~v 264 (287)
T d1pgua2 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL-DTNIFIYSVKR-PMKIIKAL---NAHKDGVNNL 264 (287)
T ss_dssp ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET-TSCEEEEESSC-TTCCEEET---TSSTTCEEEE
T ss_pred eecccccccccccccccccceeeecccccccccccCCCCeeEeecC-CCeEEEEECCC-CCeEEEEe---CCCCCCeEEE
Confidence 999987654 46889999999999875 467888777 99999999842 12222222 2677777777
Q ss_pred ecCCCCCCCCEEEEEeCCCcEEEEEC
Q 036605 210 KNSPNGEDGTVILAVAESGVAYSWDL 235 (340)
Q Consensus 210 ~~~~~~~~~~~l~~~s~dg~i~vwd~ 235 (340)
.| ++++ .+++++.||.|++|++
T Consensus 265 --~~-~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 265 --LW-ETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp --EE-EETT-EEEEEETTSCEEEEEE
T ss_pred --EE-CCCC-EEEEEECCCeEEEEEE
Confidence 66 5665 6899999999999986
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.84 E-value=3.5e-18 Score=141.71 Aligned_cols=216 Identities=11% Similarity=0.061 Sum_probs=153.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEE-EEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLL-ALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
|||+.+++++.++. ....+..++|+|||+ +| ++++.++.|.+||+.+++.+..+.. +. .+..+
T Consensus 16 v~D~~t~~~~~~i~-----~g~~p~~va~spdG~---------~l~v~~~~~~~i~v~d~~t~~~~~~~~~-~~-~~~~~ 79 (301)
T d1l0qa2 16 VIDVTSNKVTATIP-----VGSNPMGAVISPDGT---------KVYVANAHSNDVSIIDTATNNVIATVPA-GS-SPQGV 79 (301)
T ss_dssp EEETTTTEEEEEEE-----CSSSEEEEEECTTSS---------EEEEEEGGGTEEEEEETTTTEEEEEEEC-SS-SEEEE
T ss_pred EEECCCCeEEEEEE-----CCCCceEEEEeCCCC---------EEEEEECCCCEEEEEECCCCceeeeeec-cc-ccccc
Confidence 69999999999887 235678999999997 66 5777899999999999999888876 54 57899
Q ss_pred EEecCCCEEEEE-eCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec---CcEEEEECCCCceeEEeecCC
Q 036605 80 AFAKKGRSLHVV-GTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS---SEVRILSLENGEEVLKFSDDV 155 (340)
Q Consensus 80 ~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~~~~~~~~~~~~~ 155 (340)
+|++++..++.+ ..++.+.+|+..+++....+..+ ....++.++|++..++... ..+.+|+..++..+..+..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (301)
T d1l0qa2 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR 158 (301)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS
T ss_pred ccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC
Confidence 999999876654 56688999999999888777654 4678899999999886533 338999998876665543221
Q ss_pred C-----------------------------------------CeEEEEECCCCCEEEEEEc--CCCeEEEEEccCCCCCc
Q 036605 156 G-----------------------------------------PLQYVSASDGAKIIITAGY--GEKHLQVWRCDISSKTV 192 (340)
Q Consensus 156 ~-----------------------------------------~v~~~~~s~~~~~l~s~~~--~d~~i~iwd~~~~~~~~ 192 (340)
. .+..++|++++..++.++. .++.|.+||+ .+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~--~t~~~ 236 (301)
T d1l0qa2 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT--GTNKI 236 (301)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET--TTTEE
T ss_pred CceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeec--CCCeE
Confidence 1 1234445555665554433 1356777776 33332
Q ss_pred cCCceeeecCCCeeeeeecCCCCCCCCEE-EEEeCCCcEEEEECCCCCccC
Q 036605 193 NKGPALSMRHSPVAIDCKNSPNGEDGTVI-LAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~s~dg~i~vwd~~~~~~~~ 242 (340)
...+ ........+ .+ +|||.+| ++++.|+.|++||+.+++.+.
T Consensus 237 ~~~~----~~~~~~~~v--a~-spdg~~l~va~~~~~~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 237 TARI----PVGPDPAGI--AV-TPDGKKVYVALSFCNTVSVIDTATNTITA 280 (301)
T ss_dssp EEEE----ECCSSEEEE--EE-CTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEE----cCCCCEEEE--EE-eCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 2211 112222233 44 8999987 577789999999999886665
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.83 E-value=8.1e-19 Score=153.62 Aligned_cols=171 Identities=9% Similarity=-0.020 Sum_probs=128.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEE--EecC--CCCCCe
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKW--KSTG--RHPGGL 76 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~--~h~~~v 76 (340)
|||+.+++++..+. .+ ..+..++|||||+ +|++++.||+|++||+.+++... .+.. .|.+.+
T Consensus 46 vwD~~t~~~~~~l~----~g-~~~~~vafSPDGk---------~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~ 111 (426)
T d1hzua2 46 LVDGDSKKIVKVID----TG-YAVHISRMSASGR---------YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE 111 (426)
T ss_dssp EEETTTCSEEEEEE----CC-SSEEEEEECTTSC---------EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred EEECCCCcEEEEEe----CC-CCeeEEEECCCCC---------EEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence 69999999999998 44 4589999999999 99999999999999999887433 2321 255566
Q ss_pred EEEEEecCCCEEEEE-eCCCcEEEEeCCCCeEEEEeecCCC-----------CeeEEEEccCCCEEEEecC---cEEEEE
Q 036605 77 AGLAFAKKGRSLHVV-GTNGMASEMKSEMGEVIREFKASEK-----------PISSSAFLCEEKIFALASS---EVRILS 141 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~-----------~i~~l~~~~~~~~l~~~~~---~i~i~d 141 (340)
.+++|+|||++|+++ ..++.+.+||..++..+..+..+.. ....+..++++..++.... .+.+++
T Consensus 112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~ 191 (426)
T d1hzua2 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191 (426)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 777888999987655 4789999999999988777654433 3345666777776655322 266666
Q ss_pred CCCCcee-EEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 142 LENGEEV-LKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 142 ~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
......+ .....+...+..+.|+|++++++++...+..+.+++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~ 236 (426)
T d1hzua2 192 YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDS 236 (426)
T ss_dssp CSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEET
T ss_pred eccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeec
Confidence 6655433 2334567788999999999999998887888888887
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=2.3e-19 Score=150.80 Aligned_cols=216 Identities=13% Similarity=0.084 Sum_probs=136.3
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccc-cccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVG-KKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
|||+.++.....+... .+|..+|+|++|+|++ . +|++|+.||.|++|+...+.........+.......
T Consensus 37 iwd~~~~~~~~~~~~~-~~h~~~V~~v~f~~~~~~---------~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 106 (342)
T d1yfqa_ 37 VYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDL---------QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICR 106 (342)
T ss_dssp EEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSE---------EEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEE
T ss_pred EEEccCCCcceEEEEe-cCCCCCEEEEEEeCCCCC---------EEEEcccccceeeeeccccccccccccccccccccc
Confidence 6887665443322211 1588999999999875 6 899999999999999987765555544233333444
Q ss_pred EEecCCCEEEEEeCCCcEEEEeC------------------------------------------------CCCeEEEE-
Q 036605 80 AFAKKGRSLHVVGTNGMASEMKS------------------------------------------------EMGEVIRE- 110 (340)
Q Consensus 80 ~~~~~~~~l~s~~~dg~i~~wd~------------------------------------------------~~~~~~~~- 110 (340)
.+.++...+++++.++.+++||+ ........
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 186 (342)
T d1yfqa_ 107 ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186 (342)
T ss_dssp EEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCE
T ss_pred ccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCccccee
Confidence 44445555555566666666654 32221110
Q ss_pred --eecCCCCeeEEEEc-cCCCEEEEe--cCcEEEEECCCCcee------E---------EeecCCCCeEEEEECCCCCEE
Q 036605 111 --FKASEKPISSSAFL-CEEKIFALA--SSEVRILSLENGEEV------L---------KFSDDVGPLQYVSASDGAKII 170 (340)
Q Consensus 111 --~~~~~~~i~~l~~~-~~~~~l~~~--~~~i~i~d~~~~~~~------~---------~~~~~~~~v~~~~~s~~~~~l 170 (340)
.......+.+..+. .++..++++ ++.+.+|++...... . ....|...+++++|+|++.+|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 266 (342)
T d1yfqa_ 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL 266 (342)
T ss_dssp EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCE
T ss_pred eeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEE
Confidence 11122233444444 345566554 445899987643211 1 113466789999999999999
Q ss_pred EEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 171 ITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 171 ~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
++++. ||.|++||+ .+++.+..+. ..+...+..+ ++++.++++++.|+.+++|...
T Consensus 267 asg~~-Dg~v~vWD~--~~~~~l~~~~--~~~~~~~~~~-----s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 267 YTAGS-DGIISCWNL--QTRKKIKNFA--KFNEDSVVKI-----ACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEET-TSCEEEEET--TTTEEEEECC--CCSSSEEEEE-----EECSSEEEEEEECTHHHHCSSS
T ss_pred EEECC-CCEEEEEEC--CCCcEEEEec--CCCCCEEEEE-----EeCCCEEEEEEcCCcEEEeeee
Confidence 99888 999999999 4554433222 1344445555 7888999999999988888653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=2.3e-18 Score=150.83 Aligned_cols=188 Identities=16% Similarity=0.037 Sum_probs=139.4
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeE--EEEee---cCCCCe
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEV--IREFK---ASEKPI 118 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~---~~~~~i 118 (340)
++++.+.+|+|.+||..+++.+..+.. |. .+..++|+|||++|++++.|+.|.+||+.+++. ...+. .+...+
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~-g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~ 111 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDT-GY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 111 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEEC-SS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeC-CC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence 578999999999999999999999986 53 699999999999999999999999999988763 23332 333445
Q ss_pred eEEEEccCCCEEEE---ecCcEEEEECCCCceeEEeecC-----------CCCeEEEEECCCCCEEEEEEcCCCeEEEEE
Q 036605 119 SSSAFLCEEKIFAL---ASSEVRILSLENGEEVLKFSDD-----------VGPLQYVSASDGAKIIITAGYGEKHLQVWR 184 (340)
Q Consensus 119 ~~l~~~~~~~~l~~---~~~~i~i~d~~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd 184 (340)
.+..|+|||++|++ .++.|++||..+++.+..+..| ......+.++|++.+++.+...++.|.+|+
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d 191 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence 55667889998754 3455999999999888776543 345567889999998887777689999999
Q ss_pred ccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCC-CcEEEEECCCCCc
Q 036605 185 CDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAES-GVAYSWDLKTVSQ 240 (340)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d-g~i~vwd~~~~~~ 240 (340)
. ...+......+ ........+ .+ +|+|.++++++.+ +.+.+++..+.+.
T Consensus 192 ~--~~~~~~~~~~i--~~g~~~~~~--~~-spdg~~~~va~~~~~~v~v~d~~~~~~ 241 (432)
T d1qksa2 192 Y--TDLNNLKTTEI--SAERFLHDG--GL-DGSHRYFITAANARNKLVVIDTKEGKL 241 (432)
T ss_dssp T--TCSSEEEEEEE--ECCSSEEEE--EE-CTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred c--cCCCcceEEEE--cccCccccc--eE-CCCCCEEEEeccccceEEEeecccceE
Confidence 7 33332222222 222223333 33 8999988777654 5688888876444
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=2.4e-18 Score=150.68 Aligned_cols=172 Identities=9% Similarity=-0.036 Sum_probs=135.1
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCee--EEEecC--CCCCCe
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEM--KWKSTG--RHPGGL 76 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~--~h~~~v 76 (340)
|||..+++++..+. .+ ..+..++|||||+ ++++++.||.|.+||+.+++. ...+.. .|.+.+
T Consensus 46 v~D~~t~~v~~~~~----~g-~~~~~v~fSpDG~---------~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~ 111 (432)
T d1qksa2 46 LIDGSTYEIKTVLD----TG-YAVHISRLSASGR---------YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 111 (432)
T ss_dssp EEETTTCCEEEEEE----CS-SCEEEEEECTTSC---------EEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred EEECCCCcEEEEEe----CC-CCeeEEEECCCCC---------EEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence 69999999999998 33 3689999999999 999999999999999988763 333331 255566
Q ss_pred EEEEEecCCCEE-EEEeCCCcEEEEeCCCCeEEEEeecC-----------CCCeeEEEEccCCCEEEEe---cCcEEEEE
Q 036605 77 AGLAFAKKGRSL-HVVGTNGMASEMKSEMGEVIREFKAS-----------EKPISSSAFLCEEKIFALA---SSEVRILS 141 (340)
Q Consensus 77 ~~v~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~-----------~~~i~~l~~~~~~~~l~~~---~~~i~i~d 141 (340)
.++.|+|||++| ++++.++.|.+||..+++.+..+..+ ......+.++|++..++.+ ++.|.+||
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d 191 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence 677788899986 56778999999999999988776543 3345678899999887553 33499999
Q ss_pred CCCCceeEEee-cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 142 LENGEEVLKFS-DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 142 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
..+.+...... .+...+..++|+|+|+++++++..++.+.++|.+
T Consensus 192 ~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~ 237 (432)
T d1qksa2 192 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK 237 (432)
T ss_dssp TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred ccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecc
Confidence 98876554332 3456788999999999999988878899999983
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=1.3e-17 Score=140.80 Aligned_cols=97 Identities=13% Similarity=-0.001 Sum_probs=79.2
Q ss_pred EEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCC
Q 036605 27 LACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVV-GTNGMASEMKSEMG 105 (340)
Q Consensus 27 l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~dg~i~~wd~~~~ 105 (340)
++|+++++ +|++++.+++|.+||+.+++.+.++...|...+.+++|+|||++++++ ..++.|.+||+.++
T Consensus 2 ~a~~~~~~---------~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~ 72 (346)
T d1jmxb_ 2 PALKAGHE---------YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC 72 (346)
T ss_dssp CCCCTTCE---------EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ccCCCCCc---------EEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC
Confidence 46888888 999999999999999999999888865366678999999999987655 57899999999999
Q ss_pred eEEEEeecCCC------CeeEEEEccCCCEEEE
Q 036605 106 EVIREFKASEK------PISSSAFLCEEKIFAL 132 (340)
Q Consensus 106 ~~~~~~~~~~~------~i~~l~~~~~~~~l~~ 132 (340)
+.+..+..... .+..++++|||+++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v 105 (346)
T d1jmxb_ 73 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYA 105 (346)
T ss_dssp EEEEEEESCCSTTEEEECSSCEEECTTSSEEEE
T ss_pred eeeeeecccccccccCCceEEEEEecCCCEEEE
Confidence 98877653322 3457788888877755
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=2.7e-16 Score=132.07 Aligned_cols=217 Identities=10% Similarity=0.123 Sum_probs=135.7
Q ss_pred CccCCCCce---eeeeeCCCCCCCCCeEEEEeeccccccccccCceEEE-EEcCCCcEEEEEccCCeeEEEecC--CCCC
Q 036605 1 IWSTNDGSL---LAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLA-LGTSNGDILAVDVLTGEMKWKSTG--RHPG 74 (340)
Q Consensus 1 vwd~~~g~~---~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~-~g~~dg~i~i~d~~~~~~~~~~~~--~h~~ 74 (340)
|||+++... +..+ .+...+..|+|||||+ +|+ ++..|+.|.+|++........+.. .+..
T Consensus 18 v~~~~~~~~l~~~~~~-----~~~~~v~~la~spDG~---------~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (333)
T d1ri6a_ 18 VWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKR---------YLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 83 (333)
T ss_dssp EEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSS---------EEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEEcCCCCeEEEEEE-----cCCCCEeEEEEeCCCC---------EEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence 588754322 2333 4668899999999998 774 555689999999976542222211 1445
Q ss_pred CeEEEEEecCCCEEEEEeC-CCcEEEEeCCCCeEEEE--eecCCCCeeEEEEccCCCEEEEecCc---EEEEECCCCcee
Q 036605 75 GLAGLAFAKKGRSLHVVGT-NGMASEMKSEMGEVIRE--FKASEKPISSSAFLCEEKIFALASSE---VRILSLENGEEV 148 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~~~~~~---i~i~d~~~~~~~ 148 (340)
.+..++|+|||++|++++. ++.|.+|+......... ...+...+.++.++|++++++.++.. +.+|+.......
T Consensus 84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (333)
T d1ri6a_ 84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 163 (333)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence 6788999999999999875 57889998776654433 33455667888999999888764432 777775442111
Q ss_pred EEe------e-----------------------------------------------------cCCCCeEEEEECCCCCE
Q 036605 149 LKF------S-----------------------------------------------------DDVGPLQYVSASDGAKI 169 (340)
Q Consensus 149 ~~~------~-----------------------------------------------------~~~~~v~~~~~s~~~~~ 169 (340)
... . ........+++++++++
T Consensus 164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 243 (333)
T d1ri6a_ 164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 243 (333)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence 000 0 01123445667788887
Q ss_pred EEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeC-CCcEEEEECC
Q 036605 170 IITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAE-SGVAYSWDLK 236 (340)
Q Consensus 170 l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~-dg~i~vwd~~ 236 (340)
++.....++.+.+|++..................+..+.+ +|||++|++++. ++.|.+|++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~-----spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 244 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV-----DHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEE-----CTTSSEEEEECTTTCEEEEEEEE
T ss_pred eeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEE-----eCCCCEEEEEECCCCeEEEEEEE
Confidence 7777776778888887422211111111111122223333 899999877754 5889999653
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.74 E-value=1.9e-16 Score=138.41 Aligned_cols=189 Identities=15% Similarity=0.016 Sum_probs=133.0
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEE--ee---cCCCCe
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIRE--FK---ASEKPI 118 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~---~~~~~i 118 (340)
++++.+.||+|++||+.+++.+.++.. |. .+..++|+|||++|++++.|+.|++||+.+++.... +. .|...+
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~-g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~ 111 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDT-GY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE 111 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEEC-CS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeC-CC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence 567888999999999999999999986 54 699999999999999999999999999998874432 22 333445
Q ss_pred eEEEEccCCCEEEEe---cCcEEEEECCCCceeEEeecCCC-----------CeEEEEECCCCCEEEEEEcCCCeEEEEE
Q 036605 119 SSSAFLCEEKIFALA---SSEVRILSLENGEEVLKFSDDVG-----------PLQYVSASDGAKIIITAGYGEKHLQVWR 184 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~---~~~i~i~d~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~~d~~i~iwd 184 (340)
.+++|+|||++++++ ++.+.+||..++..+..+..|.. ....+.+++++..++......+.+.+++
T Consensus 112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~ 191 (426)
T d1hzua2 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191 (426)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 567778999988663 34599999999988776655443 3455666777777766666556666666
Q ss_pred ccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEe-CCCcEEEEECCCCCcc
Q 036605 185 CDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVA-ESGVAYSWDLKTVSQD 241 (340)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s-~dg~i~vwd~~~~~~~ 241 (340)
. ......... ...+......+ .+ ++++.+++++. .+..+.+++..+++..
T Consensus 192 ~--~~~~~~~~~--~~~~~~~~~~~--~~-~~~g~~~~~a~~~~~~~~~~~~~~~~~~ 242 (426)
T d1hzua2 192 Y--KDIDNLTVT--SIGAAPFLADG--GW-DSSHRYFMTAANNSNKVAVIDSKDRRLS 242 (426)
T ss_dssp C--SSSSSCEEE--EEECCSSEEEE--EE-CTTSCEEEEEETTCSEEEEEETTTTEEE
T ss_pred e--ccccceeeE--EeccCCccEee--eE-CCCCcEEEeeeecccceeeeecccccEE
Confidence 5 222211111 12333333333 44 78888777665 4566888988875443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=1.4e-15 Score=127.56 Aligned_cols=138 Identities=14% Similarity=0.082 Sum_probs=111.9
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCC-CCCCeEEEEEecCCCEEE-EEeCCCcEEEEeCCCCeEEEEeecCCC-----
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGR-HPGGLAGLAFAKKGRSLH-VVGTNGMASEMKSEMGEVIREFKASEK----- 116 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~----- 116 (340)
|+++++.|++|.+||+++++.+..+... +...+.+++|+|||++|+ +++.++.|.+||+.+++.+..+..+..
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~ 82 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccc
Confidence 8999999999999999999988888642 345678999999999875 556789999999999999888765432
Q ss_pred CeeEEEEccCCCEEEEecC--------------cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEE
Q 036605 117 PISSSAFLCEEKIFALASS--------------EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQV 182 (340)
Q Consensus 117 ~i~~l~~~~~~~~l~~~~~--------------~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~i 182 (340)
.+..++++|++++++++.. .+.+||..+++....+.. ...+..++|+|+|+++++++. .+.+
T Consensus 83 ~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~ 158 (337)
T d1pbyb_ 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR---DLHV 158 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS---SEEE
T ss_pred ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC---Ccce
Confidence 3467999999999876432 288999999988777764 456788999999999998543 4667
Q ss_pred EEc
Q 036605 183 WRC 185 (340)
Q Consensus 183 wd~ 185 (340)
||.
T Consensus 159 ~d~ 161 (337)
T d1pbyb_ 159 MDP 161 (337)
T ss_dssp EET
T ss_pred eee
Confidence 876
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.70 E-value=1.1e-14 Score=120.23 Aligned_cols=183 Identities=15% Similarity=0.128 Sum_probs=137.6
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEE-EEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLH-VVGTNGMASEMKSEMGEVIREFKASEKPISSSA 122 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~ 122 (340)
.+++++.|++|.+||+++++.+.++.. ...+..++|+|||++|+ +++.++.|.+||+.+++.+..+..+. .+..++
T Consensus 4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~--g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~ 80 (301)
T d1l0qa2 4 AYIANSESDNISVIDVTSNKVTATIPV--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (301)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEECCCCEEEEEECCCCeEEEEEEC--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccc
Confidence 445678899999999999999988874 45688999999999875 55678999999999999998887665 468899
Q ss_pred EccCCCEEEEec---CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceee
Q 036605 123 FLCEEKIFALAS---SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALS 199 (340)
Q Consensus 123 ~~~~~~~l~~~~---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~ 199 (340)
+++++..+++.+ ..+.+|+..+++....+..+ .....+.|+|++..++.++..++.+.+|+. .+........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-- 155 (301)
T d1l0qa2 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINT--VTKAVINTVS-- 155 (301)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEET--TTTEEEEEEE--
T ss_pred cccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeec--cccceeeecc--
Confidence 999999876633 23999999999877777654 567889999999999887877899999998 3433222211
Q ss_pred ecCCCeeeeeecCCCCCCCCEEEEEeCC-CcEEEEECCCCC
Q 036605 200 MRHSPVAIDCKNSPNGEDGTVILAVAES-GVAYSWDLKTVS 239 (340)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~l~~~s~d-g~i~vwd~~~~~ 239 (340)
....+....+ ++++..+++++.+ +.+.+|+.....
T Consensus 156 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (301)
T d1l0qa2 156 VGRSPKGIAV-----TPDGTKVYVANFDSMSISVIDTVTNS 191 (301)
T ss_dssp CCSSEEEEEE-----CTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cCCCceEEEe-----eccccceeeeccccccccccccccee
Confidence 1222222333 6788877777665 566777766543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.66 E-value=4.6e-15 Score=124.87 Aligned_cols=181 Identities=8% Similarity=0.012 Sum_probs=124.9
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEE-EEEcCCCcEEEEEccCCeeEEEecCCC-----CC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLL-ALGTSNGDILAVDVLTGEMKWKSTGRH-----PG 74 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~~h-----~~ 74 (340)
|||+.+++++.++. ..+...+.+++|+|||+ ++ +++..++.|.+||+.+++....+.... ..
T Consensus 22 v~D~~t~~~~~t~~---~~~~~~p~~l~~spDG~---------~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~ 89 (346)
T d1jmxb_ 22 VVDVASDTVYKSCV---MPDKFGPGTAMMAPDNR---------TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGR 89 (346)
T ss_dssp EEETTTTEEEEEEE---CSSCCSSCEEEECTTSS---------EEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEE
T ss_pred EEECCCCCEEEEEE---cCCCCCcceEEECCCCC---------EEEEEECCCCcEEEEeCccCeeeeeecccccccccCC
Confidence 69999999998887 23556788999999997 55 667789999999999998877665311 12
Q ss_pred CeEEEEEecCCCEEEEEe------------CCCcEEEEeC----------------------------------------
Q 036605 75 GLAGLAFAKKGRSLHVVG------------TNGMASEMKS---------------------------------------- 102 (340)
Q Consensus 75 ~v~~v~~~~~~~~l~s~~------------~dg~i~~wd~---------------------------------------- 102 (340)
.+..++|+|||+++++++ .++.+.+|+.
T Consensus 90 ~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (346)
T d1jmxb_ 90 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMD 169 (346)
T ss_dssp CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEEC
T ss_pred ceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEE
Confidence 356788999988877653 2334444443
Q ss_pred -CCCeEEEEee--------------------------------------------------------------------c
Q 036605 103 -EMGEVIREFK--------------------------------------------------------------------A 113 (340)
Q Consensus 103 -~~~~~~~~~~--------------------------------------------------------------------~ 113 (340)
.+++.+..+. .
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (346)
T d1jmxb_ 170 VKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD 249 (346)
T ss_dssp TTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE
T ss_pred ccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeec
Confidence 2222222111 1
Q ss_pred CCCCeeEEEEccCCCEEEE-ecCcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCc
Q 036605 114 SEKPISSSAFLCEEKIFAL-ASSEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTV 192 (340)
Q Consensus 114 ~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~ 192 (340)
+...+..+.+++++..++. ..+.|.+||+.+++.+..+. +...+.+++|+|||+++++++. |+.|+|||. .+.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~-d~~v~v~D~--~t~~~ 325 (346)
T d1jmxb_ 250 LTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGT-FNDLAVFNP--DTLEK 325 (346)
T ss_dssp CSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESB-SSEEEEEET--TTTEE
T ss_pred ccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEC--ccCCE
Confidence 1222334445555554444 44559999999998887775 4457899999999999999887 999999999 55555
Q ss_pred cCCce
Q 036605 193 NKGPA 197 (340)
Q Consensus 193 ~~~~~ 197 (340)
+..+.
T Consensus 326 i~~i~ 330 (346)
T d1jmxb_ 326 VKNIK 330 (346)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44433
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.61 E-value=2.1e-13 Score=116.22 Aligned_cols=126 Identities=10% Similarity=-0.059 Sum_probs=86.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEc----------CCCcEEEEEccCCeeEEEecC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGT----------SNGDILAVDVLTGEMKWKSTG 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~----------~dg~i~i~d~~~~~~~~~~~~ 70 (340)
|||..+|+++.++. .+... .++|+|||+ +|+++. .++.|.+||..+++....+..
T Consensus 51 v~D~~tg~~~~~~~----~~~~~--~~a~SpDG~---------~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~ 115 (373)
T d2madh_ 51 VLDAGSGSILGHVN----GGFLP--NPVAAHSGS---------EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL 115 (373)
T ss_pred EEECCCCCEEEEEe----CCCCc--cEEEcCCCC---------EEEEEeecCCcccccccceEEEEEECCCCcEEEEEec
Confidence 57889999998876 23322 689999998 777764 457899999999998877765
Q ss_pred CCCCCe-------EEEEEecCCCEEEEEe--CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE---ecCcEE
Q 036605 71 RHPGGL-------AGLAFAKKGRSLHVVG--TNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL---ASSEVR 138 (340)
Q Consensus 71 ~h~~~v-------~~v~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~---~~~~i~ 138 (340)
+.... ..+.|+++++.++... .++.+.+|+..+.+...... ...++.++|+++.+++ .++.+.
T Consensus 116 -~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~g~~~~v~~~~dg~~~ 190 (373)
T d2madh_ 116 -PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGGLA 190 (373)
T ss_pred -CCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec----cceeEEEecCCCcEEEEEcCCCeEE
Confidence 43332 4578888888766554 45678888887766543332 3456677777765432 344477
Q ss_pred EEECCCCc
Q 036605 139 ILSLENGE 146 (340)
Q Consensus 139 i~d~~~~~ 146 (340)
+|+...++
T Consensus 191 ~~~~~~~~ 198 (373)
T d2madh_ 191 KTDHAGGA 198 (373)
T ss_pred EEEcCCce
Confidence 77765543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.1e-13 Score=115.77 Aligned_cols=189 Identities=11% Similarity=0.077 Sum_probs=126.1
Q ss_pred EEEEEcCCCcEEEEEccCCee---EEEecCCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCeEEEE---eecCCC
Q 036605 44 LLALGTSNGDILAVDVLTGEM---KWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNGMASEMKSEMGEVIRE---FKASEK 116 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~---~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~---~~~~~~ 116 (340)
.+++++.+++|++|++..... +..+ . |.+.+..|+|+|||++|++++ .|+.|.+|++........ ......
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~-~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVV-D-VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 83 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-E-CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEE-c-CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence 567888999999999875432 2333 3 788999999999999997665 479999999876543222 223345
Q ss_pred CeeEEEEccCCCEEEEecC---cEEEEECCCCceeE--EeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCC
Q 036605 117 PISSSAFLCEEKIFALASS---EVRILSLENGEEVL--KFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKT 191 (340)
Q Consensus 117 ~i~~l~~~~~~~~l~~~~~---~i~i~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~ 191 (340)
.+..++|+|||++|++++. .+.+|+........ ....+...+.++.++|++++++.++..+..|.+|+.......
T Consensus 84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (333)
T d1ri6a_ 84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 163 (333)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence 5788999999999988643 38888877665443 335567788899999999999998887888999998421111
Q ss_pred ccCCc-eeeecCCCeeeeeecCCCCCCCCEEEEE-eCCCcEEEEECCC
Q 036605 192 VNKGP-ALSMRHSPVAIDCKNSPNGEDGTVILAV-AESGVAYSWDLKT 237 (340)
Q Consensus 192 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~-s~dg~i~vwd~~~ 237 (340)
..... ............+ .+ ++++.+++.. ...+...+|+...
T Consensus 164 ~~~~~~~~~~~~g~~p~~i--~~-~~~~~~~~~~~~~~~~~~v~~~~~ 208 (333)
T d1ri6a_ 164 VAQDPAEVTTVEGAGPRHM--VF-HPNEQYAYCVNELNSSVDVWELKD 208 (333)
T ss_dssp EEEEEEEEECSTTCCEEEE--EE-CTTSSEEEEEETTTTEEEEEESSC
T ss_pred eeeeceeeeeecCCCccEE--EE-eccceeEEeeccccCceEEEeecc
Confidence 10000 0111111111122 23 5666666544 4556778887654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.59 E-value=5.3e-14 Score=119.00 Aligned_cols=218 Identities=11% Similarity=0.015 Sum_probs=139.4
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEE----------cCCCcEEEEEccCCeeEEEecC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALG----------TSNGDILAVDVLTGEMKWKSTG 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g----------~~dg~i~i~d~~~~~~~~~~~~ 70 (340)
|||..+|+++.++. .+. ...++|||||+ +|++. ..++.|.+||+.+++....+..
T Consensus 32 v~D~~tg~~~~~~~----~g~--~~~~a~SpDg~---------~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~ 96 (355)
T d2bbkh_ 32 VIDGEAGRVIGMID----GGF--LPNPVVADDGS---------FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL 96 (355)
T ss_dssp EEETTTTEEEEEEE----ECS--SCEEEECTTSS---------CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred EEECCCCcEEEEEE----CCC--CCceEEcCCCC---------EEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEec
Confidence 58999999988776 222 23689999998 66653 4478999999999987776643
Q ss_pred --C----CCCCeEEEEEecCCCEEEEEe--CCCcEEEEeCCCCeEEEEeecCCC-------CeeEEEEc-----------
Q 036605 71 --R----HPGGLAGLAFAKKGRSLHVVG--TNGMASEMKSEMGEVIREFKASEK-------PISSSAFL----------- 124 (340)
Q Consensus 71 --~----h~~~v~~v~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~-------~i~~l~~~----------- 124 (340)
. .......++|+|+++.++.++ .+..+.+|+..+++.+..+..+.. ....+.++
T Consensus 97 ~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~ 176 (355)
T d2bbkh_ 97 PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFG 176 (355)
T ss_dssp TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred CCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEec
Confidence 0 122345689999999888775 457889999998877655432211 11122333
Q ss_pred ---------------------------cCCCEEEEe--cCcEEEEECCCCcee--EEeecCC----------CCeEEEEE
Q 036605 125 ---------------------------CEEKIFALA--SSEVRILSLENGEEV--LKFSDDV----------GPLQYVSA 163 (340)
Q Consensus 125 ---------------------------~~~~~l~~~--~~~i~i~d~~~~~~~--~~~~~~~----------~~v~~~~~ 163 (340)
+++..++.. ++.+++|++..++.. .....+. .....+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 256 (355)
T d2bbkh_ 177 TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 256 (355)
T ss_dssp SSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred CCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEE
Confidence 333333332 333788888776432 1112111 23345888
Q ss_pred CCCCCEEEEEEcC---------CCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCC--EEEEEeCCCcEEE
Q 036605 164 SDGAKIIITAGYG---------EKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGT--VILAVAESGVAYS 232 (340)
Q Consensus 164 s~~~~~l~s~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~s~dg~i~v 232 (340)
++++..++..... .+.|.+||. .+++....+. .++.+..+ .+ +|||. ++++++.|+.|++
T Consensus 257 ~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~--~t~~~~~~~~--~~~~~~~~----a~-spDG~~~l~v~~~~d~~i~v 327 (355)
T d2bbkh_ 257 HRALDRIYLLVDQRDEWRHKTASRFVVVLDA--KTGERLAKFE--MGHEIDSI----NV-SQDEKPLLYALSTGDKTLYI 327 (355)
T ss_dssp ETTTTEEEEEEEECCTTCTTSCEEEEEEEET--TTCCEEEEEE--EEEEECEE----EE-CCSSSCEEEEEETTTTEEEE
T ss_pred eCCCCeEEEEeccCCceeecCCCCeEEEEeC--CCCcEEEEec--CCCCEEEE----EE-cCCCCeEEEEEECCCCEEEE
Confidence 9999888775542 247899998 4544433222 23322333 33 88987 4566778999999
Q ss_pred EECCCCCccC
Q 036605 233 WDLKTVSQDE 242 (340)
Q Consensus 233 wd~~~~~~~~ 242 (340)
||+.+++.+.
T Consensus 328 ~D~~tg~~~~ 337 (355)
T d2bbkh_ 328 HDAESGEELR 337 (355)
T ss_dssp EETTTCCEEE
T ss_pred EECCCCCEEE
Confidence 9999988766
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.58 E-value=2.3e-13 Score=115.96 Aligned_cols=199 Identities=11% Similarity=0.017 Sum_probs=136.8
Q ss_pred CCCCCeEEEEeeccccccccccCceEEEEE-----cCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC
Q 036605 19 EPVVSYSCLACGFVGKKRRKERGTLLLALG-----TSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT 93 (340)
Q Consensus 19 ~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g-----~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~ 93 (340)
.+..++.+++++||++ .+++. +..+.|.+||..+++.+..+.. +.. ..++|+|||++|++++.
T Consensus 18 ~~~~p~~~~a~spdg~---------~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~-~~~--~~~a~SpDG~~l~va~~ 85 (373)
T d2madh_ 18 AADGPTNDEAPGADGR---------RSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-GFL--PNPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCccccccCCCCC---------EEEEEcccccCCCceEEEEECCCCCEEEEEeC-CCC--ccEEEcCCCCEEEEEee
Confidence 5778899999999997 56553 2446799999999999988876 443 37999999999998753
Q ss_pred ----------CCcEEEEeCCCCeEEEEeecCCCCe-------eEEEEccCCCEEEEe----cCcEEEEECCCCceeEEee
Q 036605 94 ----------NGMASEMKSEMGEVIREFKASEKPI-------SSSAFLCEEKIFALA----SSEVRILSLENGEEVLKFS 152 (340)
Q Consensus 94 ----------dg~i~~wd~~~~~~~~~~~~~~~~i-------~~l~~~~~~~~l~~~----~~~i~i~d~~~~~~~~~~~ 152 (340)
++.|.+||..+++.+..+..+.... ..+.|+++++.++.. +..+.+|+....+.....
T Consensus 86 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~- 164 (373)
T d2madh_ 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL- 164 (373)
T ss_pred cCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe-
Confidence 5789999999999888776554432 457888888876552 233888888776554333
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceee---ecCCCeeeeeecCCCCCCCCEEEEEeCCCc
Q 036605 153 DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALS---MRHSPVAIDCKNSPNGEDGTVILAVAESGV 229 (340)
Q Consensus 153 ~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~ 229 (340)
....++.++|+++.++.+...|+.+.+|+. ............ .......... .+ .+++ .++..+.++.
T Consensus 165 ---~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~-~~~~~~~~~~ 235 (373)
T d2madh_ 165 ---SSPTCYHIHPGAPSTFYLLCAQGGLAKTDH--AGGAAGAGLVGAMLTAAQNLLTQPA--QA-NKSG-RIVWPVYSGK 235 (373)
T ss_pred ---ccceeEEEecCCCcEEEEEcCCCeEEEEEc--CCceeeEEEeeeccccCccceeeeE--EE-CCCc-eEEEecCCce
Confidence 345678999999887766666999999998 333322211110 0111111111 22 3444 4556677888
Q ss_pred EEEEECCCCC
Q 036605 230 AYSWDLKTVS 239 (340)
Q Consensus 230 i~vwd~~~~~ 239 (340)
+++|+.....
T Consensus 236 v~~~~~~~~~ 245 (373)
T d2madh_ 236 ILQADISAAG 245 (373)
T ss_pred EEEEEcCCCe
Confidence 9999887643
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.54 E-value=4.2e-13 Score=113.37 Aligned_cols=192 Identities=9% Similarity=-0.027 Sum_probs=132.6
Q ss_pred CeEEEEeeccccccccccCceEEEEE-----cCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe-----
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALG-----TSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG----- 92 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g-----~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----- 92 (340)
+++-.+.+||++ .+++. ..++.|++||..+++.+.++.. + ....++|+|||++|++.+
T Consensus 3 p~~~~a~spdg~---------~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~-g--~~~~~a~SpDg~~l~v~~~~~~~ 70 (355)
T d2bbkh_ 3 PRILEAPAPDAR---------RVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-G--FLPNPVVADDGSFIAHASTVFSR 70 (355)
T ss_dssp CCBCCCCCCCTT---------EEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-C--SSCEEEECTTSSCEEEEEEEEEE
T ss_pred CcEeEeeCCCCC---------EEEEEecccCCCcCeEEEEECCCCcEEEEEEC-C--CCCceEEcCCCCEEEEEeCCCcc
Confidence 334446789997 56554 3456799999999998888865 3 344799999999888653
Q ss_pred -----CCCcEEEEeCCCCeEEEEeecCCC-------CeeEEEEccCCCEEEEecC----cEEEEECCCCceeEEeecCC-
Q 036605 93 -----TNGMASEMKSEMGEVIREFKASEK-------PISSSAFLCEEKIFALASS----EVRILSLENGEEVLKFSDDV- 155 (340)
Q Consensus 93 -----~dg~i~~wd~~~~~~~~~~~~~~~-------~i~~l~~~~~~~~l~~~~~----~i~i~d~~~~~~~~~~~~~~- 155 (340)
.|+.|.+||+.+++.+..+..+.. ....++|+|+++++++++. .+.+|+..+++.+..+..+.
T Consensus 71 ~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (355)
T d2bbkh_ 71 IARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC 150 (355)
T ss_dssp TTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE
T ss_pred ccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCc
Confidence 478999999999998887654332 2356899999999877432 38999999998877765433
Q ss_pred ------CCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCc
Q 036605 156 ------GPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGV 229 (340)
Q Consensus 156 ------~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~ 229 (340)
.....+.+++++..++.....++.+.+++.. ...... ....... .+ .+++..++.++.++.
T Consensus 151 ~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~--~~~~~~--------~~~~~~~--~~-~~~~~~~~~~~~~~~ 217 (355)
T d2bbkh_ 151 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE--VFHPED--------EFLINHP--AY-SQKAGRLVWPTYTGK 217 (355)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC--CCSCTT--------SCBCSCC--EE-ETTTTEEEEEBTTSE
T ss_pred ceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc--ccccee--------cceeeec--cc-cCCCCeEEEecCCCe
Confidence 2334566777777777665556666666652 211111 1111111 12 456677888899999
Q ss_pred EEEEECCCCC
Q 036605 230 AYSWDLKTVS 239 (340)
Q Consensus 230 i~vwd~~~~~ 239 (340)
+++|++..+.
T Consensus 218 ~~v~~~~~~~ 227 (355)
T d2bbkh_ 218 IHQIDLSSGD 227 (355)
T ss_dssp EEEEECTTSS
T ss_pred EEEEecCCCc
Confidence 9999998754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.52 E-value=5.6e-13 Score=113.60 Aligned_cols=217 Identities=12% Similarity=0.009 Sum_probs=137.0
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEc----------CCCcEEEEEccCCeeEEEecC
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGT----------SNGDILAVDVLTGEMKWKSTG 70 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~----------~dg~i~i~d~~~~~~~~~~~~ 70 (340)
+||..+++++.... .+... .++|+|||+ +|++.+ .|+.|.+||..+++....+..
T Consensus 50 ~~d~~~~~~~~~~~----~~~~~--~~a~spDg~---------~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~ 114 (368)
T d1mdah_ 50 VSCAGCGVTLGHSL----GAFLS--LAVAGHSGS---------DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp EEETTTTEEEEEEE----ECTTC--EEEECTTSS---------CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred EEeCCCCcEEEEEe----CCCCC--cceECCCCC---------EEEEEcccCccccccccCCeEEEEECCCCcEeeeecC
Confidence 35888888887766 22233 488999998 677643 467899999999998877643
Q ss_pred CCC-------CCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCC-------ee----------------
Q 036605 71 RHP-------GGLAGLAFAKKGRSLHVVG-TNGMASEMKSEMGEVIREFKASEKP-------IS---------------- 119 (340)
Q Consensus 71 ~h~-------~~v~~v~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~-------i~---------------- 119 (340)
+. .....++|+|||++|+++. .++.+.+||+.+++....+..+... ..
T Consensus 115 -p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~ 193 (368)
T d1mdah_ 115 -PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp -TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred -CccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEec
Confidence 21 1234689999999998876 5699999999998877665432211 11
Q ss_pred ----------------------EEEEccCCCEEEEecCcEEEEECCCCceeEEe--ecC----------CCCeEEEEECC
Q 036605 120 ----------------------SSAFLCEEKIFALASSEVRILSLENGEEVLKF--SDD----------VGPLQYVSASD 165 (340)
Q Consensus 120 ----------------------~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~~--~~~----------~~~v~~~~~s~ 165 (340)
...+.+++..+...++.++++++..+...... ..+ ......+++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~ 273 (368)
T d1mdah_ 194 AAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred CCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC
Confidence 22233344444444445666666554433211 111 11234578888
Q ss_pred CCCEEEEEEcCC--------CeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCC--EEEEEeCCCcEEEEEC
Q 036605 166 GAKIIITAGYGE--------KHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGT--VILAVAESGVAYSWDL 235 (340)
Q Consensus 166 ~~~~l~s~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~s~dg~i~vwd~ 235 (340)
++..++.....+ ..|.+||. .+++....+.. +.....+ .+ ++||+ .++++..|+.|++||.
T Consensus 274 ~~~~~~v~~~~~~~~~~~~~~~v~v~D~--~t~~~~~~~~~--~~~~~~~----a~-spDG~~~ly~s~~~~~~v~v~D~ 344 (368)
T d1mdah_ 274 NTDGIMILTVEHSRSCLAAAENTSSVTA--SVGQTSGPISN--GHDSDAI----IA-AQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEES--SSCCEEECCEE--EEEECEE----EE-CCSSSCEEEEEETTTTEEEEEES
T ss_pred CCCEEEEEecCCCceeecCCceEEEEEC--CCCcEeEEecC--CCceeEE----EE-CCCCCEEEEEEeCCCCeEEEEEC
Confidence 888776654322 35888887 55554444331 2222223 33 88886 3456678899999999
Q ss_pred CCCCccC
Q 036605 236 KTVSQDE 242 (340)
Q Consensus 236 ~~~~~~~ 242 (340)
.+++.+.
T Consensus 345 ~tgk~~~ 351 (368)
T d1mdah_ 345 ASDQDQS 351 (368)
T ss_dssp SSCEEEE
T ss_pred CCCCEEE
Confidence 9988766
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.33 E-value=8.4e-12 Score=109.75 Aligned_cols=148 Identities=7% Similarity=-0.043 Sum_probs=112.3
Q ss_pred EEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC----CCCCCeEEEEEecCCCEEEEEeC--------
Q 036605 26 CLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG----RHPGGLAGLAFAKKGRSLHVVGT-------- 93 (340)
Q Consensus 26 ~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----~h~~~v~~v~~~~~~~~l~s~~~-------- 93 (340)
.+.|.++++ ++.. .++.|.+||+.+++....+.. .|...|.++.|+|||++|+.++.
T Consensus 21 ~~~W~~d~~---------~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s 89 (470)
T d2bgra1 21 SLRWISDHE---------YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS 89 (470)
T ss_dssp CCEECSSSE---------EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred CCEeCCCCE---------EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeec
Confidence 578999998 6664 578899999999986654543 25578999999999999988753
Q ss_pred -CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE-ecCcEEEEECCCCceeEEeec------------------
Q 036605 94 -NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL-ASSEVRILSLENGEEVLKFSD------------------ 153 (340)
Q Consensus 94 -dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~~~~~~~~~~~~------------------ 153 (340)
++.+.+||+.+++. ..+..+...+..+.|||||+.++. .++++++|++.+++..+....
T Consensus 90 ~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~ 168 (470)
T d2bgra1 90 YTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (470)
T ss_dssp EEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred cCceEEEEECCCCcc-cccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeee
Confidence 46789999998874 457778888999999999999877 555699999998876543321
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 154 DVGPLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 154 ~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
..+....+.|||||++|+.....+..+..|.+
T Consensus 169 ~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred ecCCccccEECCCCCccceeEecCCcCceEEE
Confidence 12334668899999999997763343444443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.23 E-value=1.7e-09 Score=92.33 Aligned_cols=202 Identities=11% Similarity=0.033 Sum_probs=132.7
Q ss_pred CCeEEEEeeccccccccccCceEEE-EEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEE--EeCCC---
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLA-LGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHV--VGTNG--- 95 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~-~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s--~~~dg--- 95 (340)
-...+...+|||+ +|+ ....+..|.++|+.+++....+.-.+...+..++|+|+++.+++ .+.+.
T Consensus 72 P~~s~t~gtpDGr---------~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~ 142 (441)
T d1qnia2 72 PHISMTDGRYDGK---------YLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ 142 (441)
T ss_dssp CEEEEETTEEEEE---------EEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred CCcceecccCCCC---------EEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccc
Confidence 3456677789998 665 45678899999999998877665436678999999999985433 33331
Q ss_pred --------------cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC--------------------------
Q 036605 96 --------------MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASS-------------------------- 135 (340)
Q Consensus 96 --------------~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-------------------------- 135 (340)
.+..+|..+.+....+.... ....++++|+|+++++...
T Consensus 143 ~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~ 221 (441)
T d1qnia2 143 PNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER 221 (441)
T ss_dssp SCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHH
T ss_pred cCcccccccccccceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccc
Confidence 23568888888777766543 4688999999998876321
Q ss_pred -----------------cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCC----CCccC
Q 036605 136 -----------------EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISS----KTVNK 194 (340)
Q Consensus 136 -----------------~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~----~~~~~ 194 (340)
.+.+++....+.+..+..... ...+.++|||+|+++++..+++|.|||+..-. +....
T Consensus 222 ~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~ 300 (441)
T d1qnia2 222 IAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIEL 300 (441)
T ss_dssp HHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCG
T ss_pred eEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCc
Confidence 122333333344455544333 57899999999999988889999999983210 00000
Q ss_pred CceeeecCCCe-eeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 195 GPALSMRHSPV-AIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
...+. .+... .-.+...| .++|..+.+...|..|..|++.
T Consensus 301 ~~~~~-~~~~~glgplh~~f-d~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 301 RDTIV-AEPELGLGPLHTTF-DGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp GGGEE-ECCBCCSCEEEEEE-CSSSEEEEEETTTTEEEEEEHH
T ss_pred ceEEE-eecccccCccccee-cCCceEEEcccccceEEEeccc
Confidence 00000 11100 00111134 7888888999999999999975
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=5.7e-08 Score=77.91 Aligned_cols=199 Identities=14% Similarity=0.145 Sum_probs=125.1
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCC---CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC-Cc
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSN---GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN-GM 96 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-g~ 96 (340)
...+...+|||||+ .||..... ..+.+.+...+... .+.. +.+......|+|+|..++..... +.
T Consensus 38 ~~~~~sP~wSPDGk---------~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~spdg~~i~~~~~~~~~ 106 (269)
T d2hqsa1 38 PQPLMSPAWSPDGS---------KLAYVTFESGRSALVIQTLANGAVR-QVAS-FPRHNGAPAFSPDGSKLAFALSKTGS 106 (269)
T ss_dssp SSCEEEEEECTTSS---------EEEEEECTTSSCEEEEEETTTCCEE-EEEC-CSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred CCceeeeEECCCCC---------EEEEEEeeccCcceeeeecccCcee-EEee-eecccccceecCCCCeeeEeeecCCc
Confidence 45677899999998 77765433 34777777776544 4444 77889999999999988876543 22
Q ss_pred --EEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec-----CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCE
Q 036605 97 --ASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS-----SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKI 169 (340)
Q Consensus 97 --i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~-----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 169 (340)
+..+........ .............+++++..++... ..|.++++..+.. ..+...........|+|++..
T Consensus 107 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~ 184 (269)
T d2hqsa1 107 LNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKF 184 (269)
T ss_dssp CEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSE
T ss_pred cceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccce
Confidence 333333333322 2223344445566778777665422 2388888877643 344445566778899999999
Q ss_pred EEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCC---CcEEEEECCCCCc
Q 036605 170 IITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAES---GVAYSWDLKTVSQ 240 (340)
Q Consensus 170 l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~d---g~i~vwd~~~~~~ 240 (340)
++......+...+|..+...+..... ......... .| +|||.+|+..+.. +.|+++++.....
T Consensus 185 ~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~p--~~-SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 185 MVMVSSNGGQQHIAKQDLATGGVQVL-----SSTFLDETP--SL-APNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EEEEEECSSCEEEEEEETTTCCEEEC-----CCSSSCEEE--EE-CTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred eEEEeecCCceeeeEeecccccceEe-----ecCccccce--EE-CCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 99887767777777764333322111 111122222 45 8999999866543 4688899876543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.15 E-value=2.6e-09 Score=91.09 Aligned_cols=190 Identities=11% Similarity=0.086 Sum_probs=126.4
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecC-----------------------------CCCCCeEEEEEecCCCEEEEEe-C
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTG-----------------------------RHPGGLAGLAFAKKGRSLHVVG-T 93 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~-----------------------------~h~~~v~~v~~~~~~~~l~s~~-~ 93 (340)
.+++|+.+|.|.+|++.+++.+.++.- .|........++|||++|+... .
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~ 92 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA 92 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence 466788999999999999998877521 0222344455578999997775 5
Q ss_pred CCcEEEEeCCCCeEEEEeec-CCCCeeEEEEccCCCEE--EEecC-c------------------EEEEECCCCceeEEe
Q 036605 94 NGMASEMKSEMGEVIREFKA-SEKPISSSAFLCEEKIF--ALASS-E------------------VRILSLENGEEVLKF 151 (340)
Q Consensus 94 dg~i~~wd~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l--~~~~~-~------------------i~i~d~~~~~~~~~~ 151 (340)
+..|.++|+.+++....+.. ....++.++|+|+++.+ +..+. . +..+|..+.+...++
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 68999999999998777653 45678999999999854 33221 1 356888888777666
Q ss_pred ecCCCCeEEEEECCCCCEEEEEEcCCC--------------eEEEEEccC----------------------CCCCccCC
Q 036605 152 SDDVGPLQYVSASDGAKIIITAGYGEK--------------HLQVWRCDI----------------------SSKTVNKG 195 (340)
Q Consensus 152 ~~~~~~v~~~~~s~~~~~l~s~~~~d~--------------~i~iwd~~~----------------------~~~~~~~~ 195 (340)
... +....+.|+|+|+++++++.+.. .|.+.+... ........
T Consensus 173 ~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~ 251 (441)
T d1qnia2 173 IVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT 251 (441)
T ss_dssp EES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred ecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence 543 45688999999999998776322 222222100 00000001
Q ss_pred ceeeecCCCeeeeeecCCCCCCCCEEE-EEeCCCcEEEEECCCCC
Q 036605 196 PALSMRHSPVAIDCKNSPNGEDGTVIL-AVAESGVAYSWDLKTVS 239 (340)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~s~dg~i~vwd~~~~~ 239 (340)
..++.+..+.-+.+ +|||.+++ ++..+++|.|||+....
T Consensus 252 ~~IPvgksPhGv~v-----SPDGkyl~~~~~~~~tvsv~d~~k~~ 291 (441)
T d1qnia2 252 RYIPVPKNPHGLNT-----SPDGKYFIANGKLSPTVSVIAIDKLD 291 (441)
T ss_dssp EEECCBSSCCCEEE-----CTTSCEEEEECTTSSBEEEEEGGGHH
T ss_pred EEEeCCCCccCceE-----CCCCCEEEEeCCcCCcEEEEEeehhh
Confidence 11222334444555 89999875 56778999999998743
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.11 E-value=9.9e-10 Score=96.24 Aligned_cols=150 Identities=9% Similarity=0.021 Sum_probs=105.5
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeec-----CCCCeeEEEEccCCCEEEEec-----------CcEEEE
Q 036605 77 AGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKA-----SEKPISSSAFLCEEKIFALAS-----------SEVRIL 140 (340)
Q Consensus 77 ~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-----~~~~i~~l~~~~~~~~l~~~~-----------~~i~i~ 140 (340)
..+.|.+++++++. .|+.+.+||+.+++....+.. +...|.++.|||||++|+.+. +++++|
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence 45789999887764 578899999999987665443 446789999999999998743 248899
Q ss_pred ECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeee------------
Q 036605 141 SLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAID------------ 208 (340)
Q Consensus 141 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------ 208 (340)
|+.+++ +..+..+...+..+.|||||++|+.. . ++.+.+|+. ..++....... ........
T Consensus 98 d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~-~~~l~~~~~--~~g~~~~~t~~--~~~~~~~~g~~d~~~~~~~~ 170 (470)
T d2bgra1 98 DLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-W-NNDIYVKIE--PNLPSYRITWT--GKEDIIYNGITDWVYEEEVF 170 (470)
T ss_dssp ETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-E-TTEEEEESS--TTSCCEECCSC--CBTTTEEESBCCHHHHHHTS
T ss_pred ECCCCc-ccccccCCccccccccccCcceeeEe-e-cccceEEEC--CCCceeeeeec--cCCCcccccccceeeeeeec
Confidence 999885 56678888999999999999999984 4 788999997 34433221110 00000000
Q ss_pred --eec-CCCCCCCCEEEEEeCCCc-EEEEECC
Q 036605 209 --CKN-SPNGEDGTVILAVAESGV-AYSWDLK 236 (340)
Q Consensus 209 --~~~-~~~~~~~~~l~~~s~dg~-i~vwd~~ 236 (340)
... .| +|||.+|+....|.. +..|.+.
T Consensus 171 ~~~~~~~w-SPDGk~ia~~~~d~~~v~~~~~~ 201 (470)
T d2bgra1 171 SAYSALWW-SPNGTFLAYAQFNDTEVPLIEYS 201 (470)
T ss_dssp SSSBCEEE-CTTSSEEEEEEEECTTCCEEEEE
T ss_pred CCccccEE-CCCCCccceeEecCCcCceEEEE
Confidence 001 24 899999999877644 5555443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.11 E-value=8.2e-10 Score=93.55 Aligned_cols=182 Identities=7% Similarity=-0.061 Sum_probs=111.8
Q ss_pred CccCCCCceeeeeeCCC---CCCCCCeEEEEeeccccccccccCceEEEEEc-CCCcEEEEEccCCeeEEEecCCCCC--
Q 036605 1 IWSTNDGSLLAEWKQPD---GEPVVSYSCLACGFVGKKRRKERGTLLLALGT-SNGDILAVDVLTGEMKWKSTGRHPG-- 74 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~h~~-- 74 (340)
+||+.+++....+..+. .........++|+|||+ +|+++. .++.|.+||+.+++....+.. +..
T Consensus 100 v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk---------~l~va~~~~~~v~~~d~~~~~~~~~~~~-~~~~~ 169 (368)
T d1mdah_ 100 VFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA---------CLLFFLFGSSAAAGLSVPGASDDQLTKS-ASCFH 169 (368)
T ss_dssp EECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS---------CEEEEECSSSCEEEEEETTTEEEEEEEC-SSCCC
T ss_pred EEECCCCcEeeeecCCccceecccCCccceEECCCCC---------EEEEEeCCCCeEEEEECCCCcEeEEeec-cCcce
Confidence 58999998887665220 01112234689999998 676664 679999999999987776644 221
Q ss_pred -----CeEEEEEecCCCEEEEEeC------------------------------------CCcEEEEeCCCCeEEEEe--
Q 036605 75 -----GLAGLAFAKKGRSLHVVGT------------------------------------NGMASEMKSEMGEVIREF-- 111 (340)
Q Consensus 75 -----~v~~v~~~~~~~~l~s~~~------------------------------------dg~i~~wd~~~~~~~~~~-- 111 (340)
....+.+++||..++.... ++.+.+++...+......
T Consensus 170 ~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~ 249 (368)
T d1mdah_ 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAI 249 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCC
T ss_pred EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeec
Confidence 2233444555544433222 222333333333222111
Q ss_pred ec----------CCCCeeEEEEccCCCEEEEe---c--------CcEEEEECCCCceeEEeecCCCCeEEEEECCCCC-E
Q 036605 112 KA----------SEKPISSSAFLCEEKIFALA---S--------SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAK-I 169 (340)
Q Consensus 112 ~~----------~~~~i~~l~~~~~~~~l~~~---~--------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 169 (340)
.. .......+++++++..++.. + ..|.+||..+++.+..+.. ...+..++|+|||+ +
T Consensus 250 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ 328 (368)
T d1mdah_ 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASD 328 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCE
T ss_pred ccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEE
Confidence 00 01123457888998877552 1 1289999999988877653 35678899999997 4
Q ss_pred EEEEEcCCCeEEEEEccCCCCCccCC
Q 036605 170 IITAGYGEKHLQVWRCDISSKTVNKG 195 (340)
Q Consensus 170 l~s~~~~d~~i~iwd~~~~~~~~~~~ 195 (340)
+++++..++.|+|||. .+++....
T Consensus 329 ly~s~~~~~~v~v~D~--~tgk~~~~ 352 (368)
T d1mdah_ 329 NYANSAGTEVLDIYDA--ASDQDQSS 352 (368)
T ss_dssp EEEEETTTTEEEEEES--SSCEEEEE
T ss_pred EEEEeCCCCeEEEEEC--CCCCEEEE
Confidence 5555666899999998 56655443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.98 E-value=2.9e-07 Score=75.27 Aligned_cols=193 Identities=10% Similarity=0.060 Sum_probs=123.7
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKS 102 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~ 102 (340)
.+..++++|||+ ++++...+++|+.|+... +.. .+.. ..+.+.+++|+++|+++++...++.+..|+.
T Consensus 29 ~~e~iAv~pdG~---------l~vt~~~~~~I~~i~p~g-~~~-~~~~-~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~ 96 (302)
T d2p4oa1 29 FLENLASAPDGT---------IFVTNHEVGEIVSITPDG-NQQ-IHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSL 96 (302)
T ss_dssp CEEEEEECTTSC---------EEEEETTTTEEEEECTTC-CEE-EEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred CcCCEEECCCCC---------EEEEeCCCCEEEEEeCCC-CEE-EEEc-CCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence 577899999999 999999999999998654 322 3333 5678999999999998888777888887775
Q ss_pred CCC--eEEEEee-cCCCCeeEEEEccCCCEEEEecCc--EEEEECCCCceeEEee----------cCCCCeEEEEECCCC
Q 036605 103 EMG--EVIREFK-ASEKPISSSAFLCEEKIFALASSE--VRILSLENGEEVLKFS----------DDVGPLQYVSASDGA 167 (340)
Q Consensus 103 ~~~--~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~~~~~~~~~----------~~~~~v~~~~~s~~~ 167 (340)
... ....... ........+++.++++++++.... ++.+|...+....... ........+.++ +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~ 174 (302)
T d2p4oa1 97 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--G 174 (302)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--T
T ss_pred cccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--C
Confidence 432 2222211 233457889999999988875444 7778877664322111 111234555554 4
Q ss_pred CEEEEEEcCCCeEEEEEccCCCCCccCCc-eeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECC
Q 036605 168 KIIITAGYGEKHLQVWRCDISSKTVNKGP-ALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLK 236 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~ 236 (340)
.+++.+....+.|..+++. ........ .+.....+.-+.+ .++|.++++...++.|..++..
T Consensus 175 ~~l~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~pdgia~-----d~dG~l~va~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 175 NFLYVSNTEKMLLLRIPVD--STDKPGEPEIFVEQTNIDDFAF-----DVEGNLYGATHIYNSVVRIAPD 237 (302)
T ss_dssp TEEEEEETTTTEEEEEEBC--TTSCBCCCEEEEESCCCSSEEE-----BTTCCEEEECBTTCCEEEECTT
T ss_pred CceeeecCCCCeEEecccc--ccccccccccccCCCCCcceEE-----CCCCCEEEEEcCCCcEEEECCC
Confidence 5666666668888888874 22111111 1111222222333 6788877777778888888654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.96 E-value=2.6e-08 Score=84.03 Aligned_cols=155 Identities=12% Similarity=0.070 Sum_probs=102.9
Q ss_pred CeEEEEeeccccccccccCceEEEEEc-CCCcEEEEEccCC-eeE--EEecC-CCCCCeEEEEEecCCCEEEEEe-CCCc
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGT-SNGDILAVDVLTG-EMK--WKSTG-RHPGGLAGLAFAKKGRSLHVVG-TNGM 96 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~-~~~--~~~~~-~h~~~v~~v~~~~~~~~l~s~~-~dg~ 96 (340)
-+.++.|+|+|+ +++++. ....|.+|+.... ... ..+.. ........++|+|+++++++.. .++.
T Consensus 146 h~h~v~~sPdG~---------~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~ 216 (365)
T d1jofa_ 146 GIHGMVFDPTET---------YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR 216 (365)
T ss_dssp CEEEEEECTTSS---------EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred cceEEEECCCCC---------EEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCE
Confidence 468999999998 676664 3467888876543 221 12211 1345789999999999887766 4689
Q ss_pred EEEEeCCCCeEEE--E---eec--------------CCCCeeEEEEccCCCEEEEecC---c-----EEEEECCCCceeE
Q 036605 97 ASEMKSEMGEVIR--E---FKA--------------SEKPISSSAFLCEEKIFALASS---E-----VRILSLENGEEVL 149 (340)
Q Consensus 97 i~~wd~~~~~~~~--~---~~~--------------~~~~i~~l~~~~~~~~l~~~~~---~-----i~i~d~~~~~~~~ 149 (340)
|.+|++..+.... . ... .......+.++|+|++|+++.+ . |..|++.....+.
T Consensus 217 V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~ 296 (365)
T d1jofa_ 217 ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred EEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCcee
Confidence 9999987654221 1 110 1112457899999999977432 2 6667765432221
Q ss_pred E---e---ecCCCCeEEEEECC-CCCEEEEEEcCCCeEEEEEcc
Q 036605 150 K---F---SDDVGPLQYVSASD-GAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 150 ~---~---~~~~~~v~~~~~s~-~~~~l~s~~~~d~~i~iwd~~ 186 (340)
. + .........++++| +|++|+++...++.|.+|+++
T Consensus 297 ~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 297 KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred eEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence 1 1 11224457799998 899999988889999999984
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.89 E-value=8.7e-07 Score=72.94 Aligned_cols=203 Identities=13% Similarity=0.099 Sum_probs=130.7
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC----CCcE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT----NGMA 97 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~----dg~i 97 (340)
.....++|.++|+ ++++-..++.|+.|+..++.....+.. .......++++++|+++++... .+.+
T Consensus 40 ~~lEG~~~D~~G~---------Ly~~D~~~g~I~ri~p~g~~~~~~~~~-~~~~p~gla~~~dG~l~va~~~~~~~~~~i 109 (319)
T d2dg1a1 40 LQLEGLNFDRQGQ---------LFLLDVFEGNIFKINPETKEIKRPFVS-HKANPAAIKIHKDGRLFVCYLGDFKSTGGI 109 (319)
T ss_dssp CCEEEEEECTTSC---------EEEEETTTCEEEEECTTTCCEEEEEEC-SSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred cCcEeCEECCCCC---------EEEEECCCCEEEEEECCCCeEEEEEeC-CCCCeeEEEECCCCCEEEEecCCCccceeE
Confidence 3457899999999 888888899999999887765555544 5567899999999987776543 2446
Q ss_pred EEEeCCCCeEEEEeec--CCCCeeEEEEccCCCEEEEecC--------cEEEEECCCCceeEEeecCCCCeEEEEECCCC
Q 036605 98 SEMKSEMGEVIREFKA--SEKPISSSAFLCEEKIFALASS--------EVRILSLENGEEVLKFSDDVGPLQYVSASDGA 167 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~--------~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 167 (340)
...+...+........ .......+++.++|++.++... .+..++...+ .+..+...-...+.++|+|++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg 188 (319)
T d2dg1a1 110 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDE 188 (319)
T ss_dssp EEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTS
T ss_pred EEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeecccc
Confidence 6666665554333321 2234678999999998776321 1555554433 333333233456789999999
Q ss_pred CEEEEEEcCCCeEEEEEccCCCCCccCCce----eeecCC--CeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 036605 168 KIIITAGYGEKHLQVWRCDISSKTVNKGPA----LSMRHS--PVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 168 ~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
+.|+.+....+.|..|+++... ....... ...... +.-+.+ ..+|.+.++....|.|.+|+- .++.+
T Consensus 189 ~~lyvad~~~~~I~~~d~~~~g-~~~~~~~~~~~~~~~~~~~PdGl~v-----D~~G~l~Va~~~~g~V~~~~p-~G~~l 261 (319)
T d2dg1a1 189 KVLWVTETTANRLHRIALEDDG-VTIQPFGATIPYYFTGHEGPDSCCI-----DSDDNLYVAMYGQGRVLVFNK-RGYPI 261 (319)
T ss_dssp SEEEEEEGGGTEEEEEEECTTS-SSEEEEEEEEEEECCSSSEEEEEEE-----BTTCCEEEEEETTTEEEEECT-TSCEE
T ss_pred ceEEEecccCCceEEEEEcCCC-ceeccccceeeeccCCccceeeeeE-----cCCCCEEEEEcCCCEEEEECC-CCcEE
Confidence 9887777768999999984221 1111110 000111 112333 578888888888899999995 45544
Q ss_pred C
Q 036605 242 E 242 (340)
Q Consensus 242 ~ 242 (340)
.
T Consensus 262 ~ 262 (319)
T d2dg1a1 262 G 262 (319)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.83 E-value=2.3e-06 Score=71.78 Aligned_cols=158 Identities=11% Similarity=0.077 Sum_probs=96.4
Q ss_pred CCeEEEEEecCCCEEEEEeCC-CcEEEEeCCC-CeEEE--Eee--cCCCCeeEEEEccCCCEEEEe---cCcEEEEECCC
Q 036605 74 GGLAGLAFAKKGRSLHVVGTN-GMASEMKSEM-GEVIR--EFK--ASEKPISSSAFLCEEKIFALA---SSEVRILSLEN 144 (340)
Q Consensus 74 ~~v~~v~~~~~~~~l~s~~~d-g~i~~wd~~~-~~~~~--~~~--~~~~~i~~l~~~~~~~~l~~~---~~~i~i~d~~~ 144 (340)
..+.++.|+|+|++|++++.. ..|.+|+... +.... ... ........++|+|+++++++. +++|.+|++..
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence 357899999999999988643 4788876543 33221 111 234567899999999988663 34499999876
Q ss_pred Ccee--EE---ee--------------cCCCCeEEEEECCCCCEEEEEEcCCCe-----EEEEEccCCCCCccCCceee-
Q 036605 145 GEEV--LK---FS--------------DDVGPLQYVSASDGAKIIITAGYGEKH-----LQVWRCDISSKTVNKGPALS- 199 (340)
Q Consensus 145 ~~~~--~~---~~--------------~~~~~v~~~~~s~~~~~l~s~~~~d~~-----i~iwd~~~~~~~~~~~~~~~- 199 (340)
++.. .. +. .+......+.++|+|++|+++...+.. |..|+++. .+.......+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~-~g~~~~~~~~~~ 303 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CGSIEKQLFLSP 303 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TSCEEEEEEEEE
T ss_pred CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC-CCceeeEeEeeE
Confidence 5432 11 11 011234678999999999987654333 77787742 12111111100
Q ss_pred ---ecCCCeeeeeecCCCCC-CCCEEEEE-eCCCcEEEEECCC
Q 036605 200 ---MRHSPVAIDCKNSPNGE-DGTVILAV-AESGVAYSWDLKT 237 (340)
Q Consensus 200 ---~~~~~~~~~~~~~~~~~-~~~~l~~~-s~dg~i~vwd~~~ 237 (340)
.+..+..+.+ +| +|.+|+++ ..++.|.+|++..
T Consensus 304 ~~~~G~~p~~i~~-----~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 304 TPTSGGHSNAVSP-----CPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp CSSCCTTCCCEEE-----CTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EEcCCCCccEEEe-----cCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 1122333434 55 78877666 5678899998754
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.80 E-value=4.5e-07 Score=72.38 Aligned_cols=192 Identities=13% Similarity=0.047 Sum_probs=115.3
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKS 102 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~ 102 (340)
....++++++++ ++++...++.+.+++..++....... ......++++.++++.+++-..+..+..++.
T Consensus 58 ~p~gvav~~~g~---------i~v~d~~~~~i~~~~~~~~~~~~~~~--~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~ 126 (260)
T d1rwia_ 58 QPQGLAVDGAGT---------VYVTDFNNRVVTLAAGSNNQTVLPFD--GLNYPEGLAVDTQGAVYVADRGNNRVVKLAA 126 (260)
T ss_dssp SCCCEEECTTCC---------EEEEETTTEEEEECTTCSCCEECCCC--SCCSEEEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred CceEEEEcCCCC---------EEEeeeeeceeeeeeeccceeeeeee--eeeecccccccccceeEeecccccccccccc
Confidence 346788888888 77777777777666544444332222 3356789999999987776556677888876
Q ss_pred CCCeEEEEeecCCCCeeEEEEccCCCEEEEecC--cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeE
Q 036605 103 EMGEVIREFKASEKPISSSAFLCEEKIFALASS--EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHL 180 (340)
Q Consensus 103 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i 180 (340)
..................++++++++++++... .|..+|...................++++++|..+++ ....+.|
T Consensus 127 ~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vs-d~~~~~i 205 (260)
T d1rwia_ 127 GSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVT-EHNTNQV 205 (260)
T ss_dssp TCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEE-ETTTTEE
T ss_pred ccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeee-ecCCCEE
Confidence 654432222222345678999999998776433 3888887755333222234456789999999976555 5547788
Q ss_pred EEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEE
Q 036605 181 QVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWD 234 (340)
Q Consensus 181 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd 234 (340)
..++.. . ..........-..+..+.+ .++|..+++-..+++|+.++
T Consensus 206 ~~~~~~--~-~~~~~~~~~~~~~P~~i~~-----d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 206 VKLLAG--S-TTSTVLPFTGLNTPLAVAV-----DSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp EEECTT--C-SCCEECCCCSCCCEEEEEE-----CTTCCEEEEEGGGTEEEEEC
T ss_pred EEEeCC--C-CeEEEEccCCCCCeEEEEE-----eCCCCEEEEECCCCEEEEEe
Confidence 877752 2 1111111000012222333 56666666655566565554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.79 E-value=9.1e-07 Score=70.52 Aligned_cols=196 Identities=12% Similarity=0.061 Sum_probs=114.2
Q ss_pred CCeEEEEeeccccccccccCceEEEEE-cCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALG-TSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEM 100 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~w 100 (340)
-.-..+++.++|. ++++. +..+.|..++............ -......+++++++..+++....+.++++
T Consensus 14 ~~P~~vavd~dG~---------i~v~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~gvav~~~g~i~v~d~~~~~i~~~ 83 (260)
T d1rwia_ 14 LSPSGVAVDSAGN---------VYVTSEGMYGRVVKLATGSTGTTVLPFN-GLYQPQGLAVDGAGTVYVTDFNNRVVTLA 83 (260)
T ss_dssp CCEEEEEECTTCC---------EEEEECSSSCEEEEEC----CEEECCCC-SCCSCCCEEECTTCCEEEEETTTEEEEEC
T ss_pred CCCCEEEEcCCCC---------EEEEEcCCCCEEEEEcCCCceEEEeccC-CccCceEEEEcCCCCEEEeeeeeceeeee
Confidence 3458999999998 55554 4557777776554432222222 22345788999999877665566666666
Q ss_pred eCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCC
Q 036605 101 KSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEK 178 (340)
Q Consensus 101 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~ 178 (340)
+..++..+.... .......+++.++++++++.. ..+..++...................+++++++..+++... ++
T Consensus 84 ~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~-~~ 161 (260)
T d1rwia_ 84 AGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD-NN 161 (260)
T ss_dssp TTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGG-GT
T ss_pred eeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccc-cc
Confidence 655554433332 234578999999998877632 23666665544322211122345578999999987666444 78
Q ss_pred eEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 179 HLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 179 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
.|..++.+ ..... .........+.-+.+ .++|.++++....+.|..++...
T Consensus 162 ~i~~~d~~--~~~~~-~~~~~~~~~p~gi~~-----d~~g~l~vsd~~~~~i~~~~~~~ 212 (260)
T d1rwia_ 162 RVVKLEAE--SNNQV-VLPFTDITAPWGIAV-----DEAGTVYVTEHNTNQVVKLLAGS 212 (260)
T ss_dssp EEEEECTT--TCCEE-ECCCSSCCSEEEEEE-----CTTCCEEEEETTTTEEEEECTTC
T ss_pred cccccccc--cceee-eeeccccCCCcccee-----eeeeeeeeeecCCCEEEEEeCCC
Confidence 88888863 22111 111000111222333 57777777777778888776543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.69 E-value=7.5e-06 Score=65.75 Aligned_cols=181 Identities=13% Similarity=0.144 Sum_probs=119.0
Q ss_pred EEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEee--cCCCCeeEEEE
Q 036605 46 ALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK--ASEKPISSSAF 123 (340)
Q Consensus 46 ~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~l~~ 123 (340)
+..+.++.|..++. .+.....+..........+++.+++..+++....+.+.+++.. ++.+..+. .+......+++
T Consensus 87 ~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~ 164 (279)
T d1q7fa_ 87 TERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVV 164 (279)
T ss_dssp EECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEE
T ss_pred eccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeee
Confidence 33445567777774 4666666654455677899999999888877777888898864 56666653 33456788999
Q ss_pred ccCCCEEEEecC--cEEEEECCCCceeEEee--cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceee
Q 036605 124 LCEEKIFALASS--EVRILSLENGEEVLKFS--DDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALS 199 (340)
Q Consensus 124 ~~~~~~l~~~~~--~i~i~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~ 199 (340)
.+++.++++... .|++||.. ++.+..+. +.......+++.++|+.+++-...++.|.+|+. .++....+...
T Consensus 165 d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~---~G~~~~~~~~~ 240 (279)
T d1q7fa_ 165 NDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ---DGQLISALESK 240 (279)
T ss_dssp CSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT---TSCEEEEEEES
T ss_pred ccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC---CCCEEEEEeCC
Confidence 999987766433 39999964 55666662 344567899999999876664343457999984 45433222211
Q ss_pred ec-CCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCC
Q 036605 200 MR-HSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTV 238 (340)
Q Consensus 200 ~~-~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~ 238 (340)
.. ..+..+.+ .++|.++ +++.+++|++|.....
T Consensus 241 ~~~~~p~~vav-----~~dG~l~-V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 241 VKHAQCFDVAL-----MDDGSVV-LASKDYRLYIYRYVQL 274 (279)
T ss_dssp SCCSCEEEEEE-----ETTTEEE-EEETTTEEEEEECSCC
T ss_pred CCCCCEeEEEE-----eCCCcEE-EEeCCCeEEEEEeeee
Confidence 11 12333344 6787654 4567889999998664
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.69 E-value=1.7e-06 Score=69.33 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=66.0
Q ss_pred Eeecc--ccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeC-C-----CcEEE
Q 036605 28 ACGFV--GKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGT-N-----GMASE 99 (340)
Q Consensus 28 ~~sp~--~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d-----g~i~~ 99 (340)
..||+ |+ .+|.. .+|.|+++|+.+++.. .+.. +.+.+...+|||||+.|+.... + ..|.+
T Consensus 5 ~~sPdi~G~---------~v~f~-~~~dl~~~d~~~g~~~-~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~ 72 (281)
T d1k32a2 5 LLNPDIHGD---------RIIFV-CCDDLWEHDLKSGSTR-KIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYF 72 (281)
T ss_dssp CEEEEEETT---------EEEEE-ETTEEEEEETTTCCEE-EEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEE
T ss_pred ccCCCCCCC---------EEEEE-eCCcEEEEECCCCCEE-EEec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEE
Confidence 46898 87 56554 4567999999988754 5665 7778899999999998886542 2 24788
Q ss_pred EeCCCCeEEEEeec------CCCCeeEEEEccCCCEEEE
Q 036605 100 MKSEMGEVIREFKA------SEKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 100 wd~~~~~~~~~~~~------~~~~i~~l~~~~~~~~l~~ 132 (340)
++..+++....... .........|+|+|+.++.
T Consensus 73 ~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~ 111 (281)
T d1k32a2 73 YNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 111 (281)
T ss_dssp EETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred EEecCCceEEeeecCCCccCccccccccccCCCCCEEEE
Confidence 88888876543211 1123467889999998876
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.69 E-value=6.5e-06 Score=67.36 Aligned_cols=193 Identities=9% Similarity=0.081 Sum_probs=114.2
Q ss_pred eEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCC----CeEEEEEecCCCEEEEEeC------
Q 036605 24 YSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPG----GLAGLAFAKKGRSLHVVGT------ 93 (340)
Q Consensus 24 v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~----~v~~v~~~~~~~~l~s~~~------ 93 (340)
-..++|.+++. +|+++.....|..++...+... .+.....+ ..+.+++.++|+..++-..
T Consensus 73 P~Gl~~~~dg~---------~l~vad~~~~i~~~~~~g~~~~-~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~ 142 (314)
T d1pjxa_ 73 PAGCQCDRDAN---------QLFVADMRLGLLVVQTDGTFEE-IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPA 142 (314)
T ss_dssp EEEEEECSSSS---------EEEEEETTTEEEEEETTSCEEE-CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTS
T ss_pred ceeEEEeCCCC---------EEEEEECCCeEEEEeCCCcEEE-EEeccccccccCCCcEEEECCCCCEEEecCccCcccc
Confidence 45789999987 6777766677888897765422 22211221 3578999999987776321
Q ss_pred ---------CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC----EEEEe---cCcEEEEECCCCceeE------Ee
Q 036605 94 ---------NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEK----IFALA---SSEVRILSLENGEEVL------KF 151 (340)
Q Consensus 94 ---------dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~----~l~~~---~~~i~i~d~~~~~~~~------~~ 151 (340)
.|.|..++.. ++..... ..-.....++|+|++. .|+++ .+.|+.||+.....+. .+
T Consensus 143 ~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~ 220 (314)
T d1pjxa_ 143 DYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI 220 (314)
T ss_dssp CCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred cccceeccCCceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEc
Confidence 2356666543 4433322 2223457899998764 45443 2338888875432221 22
Q ss_pred ec-CCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCE-EEEEeCCCc
Q 036605 152 SD-DVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTV-ILAVAESGV 229 (340)
Q Consensus 152 ~~-~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~s~dg~ 229 (340)
.. .......+++..+|+..++... .+.|.+||. ..+.....+. ... .....+ +| .+++.. +++.+..|.
T Consensus 221 ~~~~~~~pdGiavD~~GnlyVa~~~-~g~I~~~dp--~~g~~~~~i~--~p~-~~~t~~--af-g~d~~~lyVt~~~~g~ 291 (314)
T d1pjxa_ 221 PGTHEGGADGMDFDEDNNLLVANWG-SSHIEVFGP--DGGQPKMRIR--CPF-EKPSNL--HF-KPQTKTIFVTEHENNA 291 (314)
T ss_dssp CCCSSCEEEEEEEBTTCCEEEEEET-TTEEEEECT--TCBSCSEEEE--CSS-SCEEEE--EE-CTTSSEEEEEETTTTE
T ss_pred cccccccceeeEEecCCcEEEEEcC-CCEEEEEeC--CCCEEEEEEE--CCC-CCEEEE--EE-eCCCCEEEEEECCCCc
Confidence 21 1233568999999987666444 889999986 3333222222 111 223333 55 678764 466677788
Q ss_pred EEEEECCC
Q 036605 230 AYSWDLKT 237 (340)
Q Consensus 230 i~vwd~~~ 237 (340)
|+.+++..
T Consensus 292 i~~~~~~~ 299 (314)
T d1pjxa_ 292 VWKFEWQR 299 (314)
T ss_dssp EEEEECSS
T ss_pred EEEEECCC
Confidence 98888765
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.67 E-value=8.2e-06 Score=65.52 Aligned_cols=152 Identities=12% Similarity=0.154 Sum_probs=110.2
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEec-CCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKST-GRHPGGLAGLAFAKKGRSLHVVGTNGMAS 98 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 98 (340)
.......+++.+++. ++++....+.+.+++.. ++.+..+. ..+......+++.++++.+++....+.|.
T Consensus 112 ~~~~p~~~avd~~G~---------i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~ 181 (279)
T d1q7fa_ 112 ILQHPRGVTVDNKGR---------IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK 181 (279)
T ss_dssp TCSCEEEEEECTTSC---------EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred cccccceeccccCCc---------EEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccccee
Confidence 345567788888888 77777777888888854 55555552 23666788999999998877777789999
Q ss_pred EEeCCCCeEEEEee--cCCCCeeEEEEccCCCEEEEec--C-cEEEEECCCCceeEEeec--CCCCeEEEEECCCCCEEE
Q 036605 99 EMKSEMGEVIREFK--ASEKPISSSAFLCEEKIFALAS--S-EVRILSLENGEEVLKFSD--DVGPLQYVSASDGAKIII 171 (340)
Q Consensus 99 ~wd~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~--~-~i~i~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~ 171 (340)
+||.. |+.+..+. +.......|++.++|+++++-. + .|.+|+ .+|+.+..+.. .......+++.++|.++
T Consensus 182 ~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~- 258 (279)
T d1q7fa_ 182 VFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVV- 258 (279)
T ss_dssp EEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEE-
T ss_pred eeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEE-
Confidence 99964 66666653 2334578999999999777632 2 388888 45776666633 23457899999999654
Q ss_pred EEEcCCCeEEEEEc
Q 036605 172 TAGYGEKHLQVWRC 185 (340)
Q Consensus 172 s~~~~d~~i~iwd~ 185 (340)
++.. ++.|++|..
T Consensus 259 V~~~-n~~v~~fr~ 271 (279)
T d1q7fa_ 259 LASK-DYRLYIYRY 271 (279)
T ss_dssp EEET-TTEEEEEEC
T ss_pred EEeC-CCeEEEEEe
Confidence 4455 899999997
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.67 E-value=5e-06 Score=68.06 Aligned_cols=201 Identities=15% Similarity=0.107 Sum_probs=120.5
Q ss_pred CeEEEEeeccccccccccCceEEEEEcC-------CCcEEEEEccCCeeEEEecC---CCCCCeEEEEEecCCCEEEEEe
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTS-------NGDILAVDVLTGEMKWKSTG---RHPGGLAGLAFAKKGRSLHVVG 92 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~-------dg~i~i~d~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~~ 92 (340)
....++|.|+|+ ++++... +|.|..||..++........ ...+.-..++|.++++.|++++
T Consensus 19 g~EGpa~d~dG~---------ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad 89 (314)
T d1pjxa_ 19 GAEGPVFDKNGD---------FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD 89 (314)
T ss_dssp TCEEEEECTTSC---------EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE
T ss_pred CCeEeEEeCCCC---------EEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEE
Confidence 346789999998 6665432 46799999888764433221 0123457899999999999888
Q ss_pred CCCcEEEEeCCCCeEEEEeecCC----CCeeEEEEccCCCEEEEecC-----------------cEEEEECCCCceeEEe
Q 036605 93 TNGMASEMKSEMGEVIREFKASE----KPISSSAFLCEEKIFALASS-----------------EVRILSLENGEEVLKF 151 (340)
Q Consensus 93 ~dg~i~~wd~~~~~~~~~~~~~~----~~i~~l~~~~~~~~l~~~~~-----------------~i~i~d~~~~~~~~~~ 151 (340)
....|..++...+.......... .....+++.++|.+.++... .|+.++. .++.. .+
T Consensus 90 ~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~-~~ 167 (314)
T d1pjxa_ 90 MRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMI-QV 167 (314)
T ss_dssp TTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEE-EE
T ss_pred CCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCcee-Ee
Confidence 77789999987654322111111 12578999999998877311 1333433 23322 22
Q ss_pred ecCCCCeEEEEECCCCC----EEEEEEcCCCeEEEEEccCCCCCccC-Cceeeec--CC--CeeeeeecCCCCCCCCEEE
Q 036605 152 SDDVGPLQYVSASDGAK----IIITAGYGEKHLQVWRCDISSKTVNK-GPALSMR--HS--PVAIDCKNSPNGEDGTVIL 222 (340)
Q Consensus 152 ~~~~~~v~~~~~s~~~~----~l~s~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~--~~--~~~~~~~~~~~~~~~~~l~ 222 (340)
.......+.++|++++. +|+.+....+.|..|+++. .+.... .....+. .. +.-+.+ ..+|..++
T Consensus 168 ~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~-~g~~~~~~~~~~~~~~~~~~pdGiav-----D~~GnlyV 241 (314)
T d1pjxa_ 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG-PAKIENKKVWGHIPGTHEGGADGMDF-----DEDNNLLV 241 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE-TTEEEEEEEEEECCCCSSCEEEEEEE-----BTTCCEEE
T ss_pred eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccC-ccccceeeEEEEccccccccceeeEE-----ecCCcEEE
Confidence 22233456889988764 5666566588899998742 221110 0010111 11 111222 57788777
Q ss_pred EEeCCCcEEEEECCCCCc
Q 036605 223 AVAESGVAYSWDLKTVSQ 240 (340)
Q Consensus 223 ~~s~dg~i~vwd~~~~~~ 240 (340)
+....+.|++||...+..
T Consensus 242 a~~~~g~I~~~dp~~g~~ 259 (314)
T d1pjxa_ 242 ANWGSSHIEVFGPDGGQP 259 (314)
T ss_dssp EEETTTEEEEECTTCBSC
T ss_pred EEcCCCEEEEEeCCCCEE
Confidence 777788899998776543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.66 E-value=9.2e-06 Score=66.62 Aligned_cols=162 Identities=10% Similarity=0.043 Sum_probs=97.5
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcC----CCcEEEEEccCCeeEEEecC-CCCCCeEEEEEecCCCEEEEEeC--
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTS----NGDILAVDVLTGEMKWKSTG-RHPGGLAGLAFAKKGRSLHVVGT-- 93 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~----dg~i~i~d~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~-- 93 (340)
......++++++|+ ++++... .+.|...+...+........ .-....+.+++.++|+..++-..
T Consensus 81 ~~~p~gla~~~dG~---------l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~ 151 (319)
T d2dg1a1 81 KANPAAIKIHKDGR---------LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY 151 (319)
T ss_dssp SSSEEEEEECTTSC---------EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred CCCeeEEEECCCCC---------EEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccc
Confidence 34567899999998 6666533 23455556555554433332 12335788999999986655322
Q ss_pred ----CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec---CcEEEEECCCC-ceeE----Ee---ecCCCCe
Q 036605 94 ----NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS---SEVRILSLENG-EEVL----KF---SDDVGPL 158 (340)
Q Consensus 94 ----dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~~~-~~~~----~~---~~~~~~v 158 (340)
.+.+..++...+.. ..+...-.....|+|+|+++.|+.++ +.|+.||+... .... .. .......
T Consensus 152 ~~~~~g~v~~~~~dg~~~-~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~P 230 (319)
T d2dg1a1 152 STNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP 230 (319)
T ss_dssp TTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEE
T ss_pred cccCcceeEEEeccccee-EEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccce
Confidence 13466666654433 23222233457899999999776643 44999987532 1111 11 1112335
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCc
Q 036605 159 QYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGP 196 (340)
Q Consensus 159 ~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~ 196 (340)
..+++..+|+..++... .+.|.+|+- .++.+..+
T Consensus 231 dGl~vD~~G~l~Va~~~-~g~V~~~~p---~G~~l~~i 264 (319)
T d2dg1a1 231 DSCCIDSDDNLYVAMYG-QGRVLVFNK---RGYPIGQI 264 (319)
T ss_dssp EEEEEBTTCCEEEEEET-TTEEEEECT---TSCEEEEE
T ss_pred eeeeEcCCCCEEEEEcC-CCEEEEECC---CCcEEEEE
Confidence 68999999986666544 899999994 45544433
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.62 E-value=3.2e-05 Score=62.52 Aligned_cols=183 Identities=13% Similarity=0.008 Sum_probs=111.8
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC---CCCCCeEEEEEecCCCEEEEEeCC---
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG---RHPGGLAGLAFAKKGRSLHVVGTN--- 94 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~~~d--- 94 (340)
...+.++++.+++. +++ ++.+ -|.++|..+++....... .....++.+.+.|+|+..++....
T Consensus 58 ~~~~~~i~~~~dg~---------l~v-a~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~ 126 (295)
T d2ghsa1 58 PFMGSALAKISDSK---------QLI-ASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAE 126 (295)
T ss_dssp SSCEEEEEEEETTE---------EEE-EETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCC
T ss_pred CCCcEEEEEecCCC---------EEE-EEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEecccccc
Confidence 35688999998888 554 4555 488999999875433221 112257899999999876654322
Q ss_pred -CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec---CcEEEEECCCC------ce--eEEeecCCCCeEEEE
Q 036605 95 -GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS---SEVRILSLENG------EE--VLKFSDDVGPLQYVS 162 (340)
Q Consensus 95 -g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~~~------~~--~~~~~~~~~~v~~~~ 162 (340)
+.-.+|.+..++....+.. -.....++++++++.++.++ +.|+.|++... +. ...+.+..+....++
T Consensus 127 ~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~ 205 (295)
T d2ghsa1 127 TGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSV 205 (295)
T ss_dssp TTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEE
T ss_pred ccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceE
Confidence 3445666666765444433 33467899999999776643 33888886421 11 112233445678899
Q ss_pred ECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEE
Q 036605 163 ASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAV 224 (340)
Q Consensus 163 ~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 224 (340)
+..+|...++.-. .+.|..||- .++....+.++. .....+ +|..++...|+..
T Consensus 206 vD~~GnlWva~~~-~g~V~~~dp---~G~~~~~i~lP~---~~~T~~--~FGG~d~~~LyvT 258 (295)
T d2ghsa1 206 CDAEGHIWNARWG-EGAVDRYDT---DGNHIARYEVPG---KQTTCP--AFIGPDASRLLVT 258 (295)
T ss_dssp ECTTSCEEEEEET-TTEEEEECT---TCCEEEEEECSC---SBEEEE--EEESTTSCEEEEE
T ss_pred EcCCCCEEeeeeC-CCceEEecC---CCcEeeEecCCC---CceEEE--EEeCCCCCEEEEE
Confidence 9999976665434 788999984 455544443221 223333 5545666555443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.60 E-value=8.5e-06 Score=66.23 Aligned_cols=154 Identities=9% Similarity=-0.051 Sum_probs=100.5
Q ss_pred CCCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCe--eEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcE
Q 036605 20 PVVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGE--MKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMA 97 (340)
Q Consensus 20 ~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 97 (340)
....+.+++|+|+|+ ++++...++.+..|+..... .............+.+++.++++.+++-+.++.+
T Consensus 66 ~~~~~~gla~~~dG~---------l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i 136 (302)
T d2p4oa1 66 VEGKVSGLAFTSNGD---------LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAI 136 (302)
T ss_dssp CSSEEEEEEECTTSC---------EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEE
T ss_pred CCCCcceEEEcCCCC---------eEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccc
Confidence 446789999999999 88888888889888876432 2222222245568999999999888888888999
Q ss_pred EEEeCCCCeEEEEeec--------C--CCCeeEEEEccCCCEEEE---ecCcEEEEECCCCceeE--EeecCCCCeEEEE
Q 036605 98 SEMKSEMGEVIREFKA--------S--EKPISSSAFLCEEKIFAL---ASSEVRILSLENGEEVL--KFSDDVGPLQYVS 162 (340)
Q Consensus 98 ~~wd~~~~~~~~~~~~--------~--~~~i~~l~~~~~~~~l~~---~~~~i~i~d~~~~~~~~--~~~~~~~~v~~~~ 162 (340)
..++...+........ . ......+.+. +..++. ..+.|+.++........ ...........++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia 214 (302)
T d2p4oa1 137 WLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFA 214 (302)
T ss_dssp EEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEE
T ss_pred eeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceE
Confidence 9999887764432221 1 1123445554 444444 23338878876543221 1111233456799
Q ss_pred ECCCCCEEEEEEcCCCeEEEEEc
Q 036605 163 ASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 163 ~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
|+++|.+.++... ++.|..++.
T Consensus 215 ~d~dG~l~va~~~-~~~V~~i~p 236 (302)
T d2p4oa1 215 FDVEGNLYGATHI-YNSVVRIAP 236 (302)
T ss_dssp EBTTCCEEEECBT-TCCEEEECT
T ss_pred ECCCCCEEEEEcC-CCcEEEECC
Confidence 9999986666444 888888875
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.55 E-value=5.3e-05 Score=61.15 Aligned_cols=199 Identities=9% Similarity=-0.008 Sum_probs=127.3
Q ss_pred EEEEeecc-ccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 036605 25 SCLACGFV-GKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSE 103 (340)
Q Consensus 25 ~~l~~sp~-~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~ 103 (340)
-+..|.+. ++ ++.+--..+.|+.||..+++.. .+. ....+.++++.++|.++++ +.+ .+..+|..
T Consensus 21 Egp~wd~~~~~---------l~wvDi~~~~I~r~d~~~g~~~-~~~--~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~ 86 (295)
T d2ghsa1 21 EGPTFDPASGT---------AWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSKQLIA-SDD-GLFLRDTA 86 (295)
T ss_dssp EEEEEETTTTE---------EEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTEEEEE-ETT-EEEEEETT
T ss_pred eCCeEECCCCE---------EEEEECCCCEEEEEECCCCeEE-EEE--CCCCcEEEEEecCCCEEEE-EeC-ccEEeecc
Confidence 35668864 46 6667667899999999988643 333 3457889999988876665 454 58899999
Q ss_pred CCeEEEEeecC----CCCeeEEEEccCCCEEEEec------CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEE
Q 036605 104 MGEVIREFKAS----EKPISSSAFLCEEKIFALAS------SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 104 ~~~~~~~~~~~----~~~i~~l~~~~~~~~l~~~~------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 173 (340)
+++........ ...+..+.+.|+|++.++.. ..-.+|.+..++....+.. ......++|+++++.++.+
T Consensus 87 tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~ 165 (295)
T d2ghsa1 87 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFV 165 (295)
T ss_dssp TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEE
T ss_pred cceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEe
Confidence 98765433211 12478899999999877621 1256677767754443332 3456789999999988877
Q ss_pred EcCCCeEEEEEccCCCCCccCCcee--eec-CCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 174 GYGEKHLQVWRCDISSKTVNKGPAL--SMR-HSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 174 ~~~d~~i~iwd~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
....+.|..|+++............ ... .....-.+ +. ..+|.+.++.-..|.|..||- .++.+.
T Consensus 166 dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~--~v-D~~GnlWva~~~~g~V~~~dp-~G~~~~ 233 (295)
T d2ghsa1 166 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGS--VC-DAEGHIWNARWGEGAVDRYDT-DGNHIA 233 (295)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEE--EE-CTTSCEEEEEETTTEEEEECT-TCCEEE
T ss_pred ecccceeeEeeecccccccccceEEEeccCcccccccce--EE-cCCCCEEeeeeCCCceEEecC-CCcEee
Confidence 7768899999885333322221111 111 11111122 22 677777777777788999985 344443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=5.6e-06 Score=71.67 Aligned_cols=119 Identities=9% Similarity=0.002 Sum_probs=78.0
Q ss_pred ccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEc---------CCCcEEEEEccCCeeEEEecC--
Q 036605 2 WSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGT---------SNGDILAVDVLTGEMKWKSTG-- 70 (340)
Q Consensus 2 wd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~---------~dg~i~i~d~~~~~~~~~~~~-- 70 (340)
||+.+++....+... .-....+....||||++ +++... ..+.+.+||+.++... .+..
T Consensus 42 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~SpD~~---------~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~-~l~~~~ 110 (465)
T d1xfda1 42 WNVETNTSTVLIEGK-KIESLRAIRYEISPDRE---------YALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPE 110 (465)
T ss_dssp BCGGGCCCEEEECTT-TTTTTTCSEEEECTTSS---------EEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTT
T ss_pred EECCCCCEEEEEcCc-cccccccceeEECCCCC---------eEEEEEcccceeEeeccccEEEEEccCCcee-eccCcc
Confidence 566666543223211 11234677788999998 777653 3578999999988744 3322
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC-CCC-----------------eeEEEEccCCCEEEE
Q 036605 71 RHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKAS-EKP-----------------ISSSAFLCEEKIFAL 132 (340)
Q Consensus 71 ~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~-----------------i~~l~~~~~~~~l~~ 132 (340)
...+.+....|||||+.|+... ++.|.+.+..++..++..... ... -..+.|||||+.|+.
T Consensus 111 ~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf 189 (465)
T d1xfda1 111 VSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY 189 (465)
T ss_dssp CCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEE
T ss_pred CCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEE
Confidence 1344566789999999988765 568888888777655443221 111 246789999999976
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=7.8e-05 Score=58.87 Aligned_cols=174 Identities=16% Similarity=0.146 Sum_probs=105.1
Q ss_pred cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCE
Q 036605 53 DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTN---GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKI 129 (340)
Q Consensus 53 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 129 (340)
.|+|.|...+... .+.. +...+...+|||||+.|+..... ..+.+.+...+... .+..+........|+|+|..
T Consensus 20 ~l~i~d~dG~~~~-~l~~-~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYDGYNQF-VVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETTSCSCE-EEEE-ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCCCCCcE-EEec-CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCe
Confidence 5888887654433 4444 56788999999999999877544 34777777766654 44456677888999999999
Q ss_pred EEEecC-----cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCceeeecCCC
Q 036605 130 FALASS-----EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPALSMRHSP 204 (340)
Q Consensus 130 l~~~~~-----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 204 (340)
++.... .+..+....... ..............+++++..++.....++...+|..+...+.... .. ....
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~---~~~~ 171 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-IT---WEGS 171 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CC---CSSS
T ss_pred eeEeeecCCccceeecccccccc-eeeeeccccccccccccccccceecccccCCceEeeeeccccccee-ee---cccc
Confidence 876222 144444444332 2333344555566778888777766665676666665434432211 11 1222
Q ss_pred eeeeeecCCCCCCCCEEEEEeCCC-c--EEEEECCC
Q 036605 205 VAIDCKNSPNGEDGTVILAVAESG-V--AYSWDLKT 237 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~s~dg-~--i~vwd~~~ 237 (340)
..... .+ ++++..++..+.++ . +.+.+...
T Consensus 172 ~~~~~--~~-spdg~~~~~~~~~~~~~~i~~~~~~~ 204 (269)
T d2hqsa1 172 QNQDA--DV-SSDGKFMVMVSSNGGQQHIAKQDLAT 204 (269)
T ss_dssp EEEEE--EE-CTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred ccccc--cc-ccccceeEEEeecCCceeeeEeeccc
Confidence 22222 44 78888888776654 3 44444443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=3.9e-07 Score=79.16 Aligned_cols=149 Identities=8% Similarity=-0.051 Sum_probs=101.9
Q ss_pred EEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecC--CCCCCeEEEEEecCCCEEEEEe---------CCC
Q 036605 27 LACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTG--RHPGGLAGLAFAKKGRSLHVVG---------TNG 95 (340)
Q Consensus 27 l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~---------~dg 95 (340)
..|.+++. ++. -..+|.|.+||+.+++....+.. ...-.+....|+||+++++... ..+
T Consensus 22 ~~W~~~~~---------~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~ 91 (465)
T d1xfda1 22 AKWISDTE---------FIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (465)
T ss_dssp CCBSSSSC---------BCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred CEEeCCCc---------EEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccc
Confidence 46888887 544 45678999999998875433333 1223577888999999887754 346
Q ss_pred cEEEEeCCCCeEEEEee--cCCCCeeEEEEccCCCEEEE-ecCcEEEEECCCCceeEEee-cCCC---------------
Q 036605 96 MASEMKSEMGEVIREFK--ASEKPISSSAFLCEEKIFAL-ASSEVRILSLENGEEVLKFS-DDVG--------------- 156 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~-~~~~i~i~d~~~~~~~~~~~-~~~~--------------- 156 (340)
.+.++|+.++....... .....+....|||||+.+|. .+++|++.+..++..++... +...
T Consensus 92 ~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~ 171 (465)
T d1xfda1 92 YYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEI 171 (465)
T ss_dssp EEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred cEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhh
Confidence 78999999887543322 22344666889999998865 66779999987776554332 1111
Q ss_pred --CeEEEEECCCCCEEEEEEcCCCeEEEEEc
Q 036605 157 --PLQYVSASDGAKIIITAGYGEKHLQVWRC 185 (340)
Q Consensus 157 --~v~~~~~s~~~~~l~s~~~~d~~i~iwd~ 185 (340)
.-..+.|||||++|+.....+..+..+.+
T Consensus 172 ~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMEL 202 (465)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred ccccceEEECCCCCeEEEEEecccccceeec
Confidence 12567899999999987665565655554
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.06 E-value=0.00032 Score=55.36 Aligned_cols=75 Identities=15% Similarity=0.050 Sum_probs=49.8
Q ss_pred cCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEc-CC-----CcEEEEEccCCeeEEEecC------
Q 036605 3 STNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGT-SN-----GDILAVDVLTGEMKWKSTG------ 70 (340)
Q Consensus 3 d~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~-~d-----g~i~i~d~~~~~~~~~~~~------ 70 (340)
|+.+|+.. .++ .+...+...+|||||+ .||... .+ ..|.+++..+++.. .+..
T Consensus 27 d~~~g~~~-~Lt----~~~~~~~~p~~SPDG~---------~iaf~~~~~~~~~~~~i~~~~~~~g~~~-~lt~~~~~~~ 91 (281)
T d1k32a2 27 DLKSGSTR-KIV----SNLGVINNARFFPDGR---------KIAIRVMRGSSLNTADLYFYNGENGEIK-RITYFSGKST 91 (281)
T ss_dssp ETTTCCEE-EEE----CSSSEEEEEEECTTSS---------EEEEEEEESTTCCEEEEEEEETTTTEEE-ECCCCCEEEE
T ss_pred ECCCCCEE-EEe----cCCCcccCEEECCCCC---------EEEEEEeeCCCCCceEEEEEEecCCceE-EeeecCCCcc
Confidence 66777654 455 4556788899999998 676543 22 24888888888654 3332
Q ss_pred CCCCCeEEEEEecCCCEEEEEe
Q 036605 71 RHPGGLAGLAFAKKGRSLHVVG 92 (340)
Q Consensus 71 ~h~~~v~~v~~~~~~~~l~s~~ 92 (340)
..........|+|+|+.|+...
T Consensus 92 ~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 92 GRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp TTEECSEEEEECTTCCEEEEEC
T ss_pred CccccccccccCCCCCEEEEEE
Confidence 0122456789999999888643
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.05 E-value=0.00099 Score=55.18 Aligned_cols=188 Identities=11% Similarity=0.088 Sum_probs=118.0
Q ss_pred EEEEEc-CCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCC--CEEEEEeCCC------------------cEEEEeC
Q 036605 44 LLALGT-SNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKG--RSLHVVGTNG------------------MASEMKS 102 (340)
Q Consensus 44 ~l~~g~-~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~l~s~~~dg------------------~i~~wd~ 102 (340)
+|++.. .+..|.+.|+.+.+....+.-.....+..++..+++ .+++..+.+. .+.++|.
T Consensus 101 ylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~ 180 (459)
T d1fwxa2 101 FLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA 180 (459)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEET
T ss_pred EEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEec
Confidence 666654 678999999999987664433245567777776544 4666655532 3678899
Q ss_pred CCCeEEEEeecCCCCeeEEEEccCCCEEEEecCc-----------------EEEEEC-----------------------
Q 036605 103 EMGEVIREFKASEKPISSSAFLCEEKIFALASSE-----------------VRILSL----------------------- 142 (340)
Q Consensus 103 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~-----------------i~i~d~----------------------- 142 (340)
.+.+....+.... ....++++++|+++++.+.. +.+++.
T Consensus 181 ~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~ 259 (459)
T d1fwxa2 181 DKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDG 259 (459)
T ss_dssp TTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEEC
T ss_pred CCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecc
Confidence 9988877766433 46789999999999773210 334433
Q ss_pred CCC--ceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCC-----CCccC-Cce--eeecCCCeeeeeecC
Q 036605 143 ENG--EEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISS-----KTVNK-GPA--LSMRHSPVAIDCKNS 212 (340)
Q Consensus 143 ~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~-----~~~~~-~~~--~~~~~~~~~~~~~~~ 212 (340)
+.. ..+..+..-......+.++|||+|+++++.-+.++.|+|++.-. +.... .+. ..++..+....+
T Consensus 260 ~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~f--- 336 (459)
T d1fwxa2 260 RKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF--- 336 (459)
T ss_dssp SGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEE---
T ss_pred cccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccccc---
Confidence 221 11111111123356789999999999999889999999983100 00001 111 112233333333
Q ss_pred CCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 213 PNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 213 ~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
...|....+.--|..|.-|++..
T Consensus 337 --d~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 337 --DGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp --CTTSEEEEEETTTTEEEEEEHHH
T ss_pred --CCCceEEEEeeccceEEEEecch
Confidence 66777677777899999999854
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.77 E-value=0.005 Score=48.18 Aligned_cols=201 Identities=11% Similarity=0.029 Sum_probs=119.7
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe-CCCcEEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNGMASEM 100 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~~w 100 (340)
..+..|+|.+..+ .++.+-..++.|+..++..+.....+.. ....+.++++..-+..|+.+. ..+.|.+.
T Consensus 36 ~~~~~ld~D~~~~--------~iywsd~~~~~I~~~~l~g~~~~~v~~~-~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~ 106 (263)
T d1npea_ 36 KVIIGLAFDCVDK--------VVYWTDISEPSIGRASLHGGEPTTIIRQ-DLGSPEGIALDHLGRTIFWTDSQLDRIEVA 106 (263)
T ss_dssp EEEEEEEEETTTT--------EEEEEETTTTEEEEEESSSCCCEEEECT-TCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CcEEEEEEEeCCC--------EEEEEECCCCeEEEEEcccCCcEEEEEe-ccccccEEEEeccCCeEEEeccCCCEEEEE
Confidence 3466788887664 0444445678898888876654444443 445789999987777777665 45799999
Q ss_pred eCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec---Cc--EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEc
Q 036605 101 KSEMGEVIREFKASEKPISSSAFLCEEKIFALAS---SE--VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 101 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 175 (340)
++........+......+..+++.|...+++..+ .. |.-.++............-.....+++++.+..|+.+..
T Consensus 107 ~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~ 186 (263)
T d1npea_ 107 KMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (263)
T ss_dssp ETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred ecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC
Confidence 9876543333333345688999999877775422 22 444455543332222333356689999988888877766
Q ss_pred CCCeEEEEEccCCCCCccCCceeeecCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 036605 176 GEKHLQVWRCDISSKTVNKGPALSMRHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQD 241 (340)
Q Consensus 176 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~ 241 (340)
..+.|...+++ ... ...+.-.+. .|..+++ . ++....+-...+.|...|..+++..
T Consensus 187 ~~~~I~~~~~~--g~~-~~~v~~~~~-~P~~lav-----~-~~~lYwtd~~~~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 187 GTHRAECLNPA--QPG-RRKVLEGLQ-YPFAVTS-----Y-GKNLYYTDWKTNSVIAMDLAISKEM 242 (263)
T ss_dssp TTTEEEEEETT--EEE-EEEEEECCC-SEEEEEE-----E-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCEEEEEECC--CCC-eEEEECCCC-CcEEEEE-----E-CCEEEEEECCCCEEEEEECCCCccc
Confidence 67888888873 221 111111112 1222222 1 2333344445667777777665443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.58 E-value=0.014 Score=48.17 Aligned_cols=170 Identities=11% Similarity=0.074 Sum_probs=99.0
Q ss_pred cEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCC---------------cEEEEe----------------
Q 036605 53 DILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNG---------------MASEMK---------------- 101 (340)
Q Consensus 53 ~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg---------------~i~~wd---------------- 101 (340)
.+.++|.++++..+.+.- .+....+.++++|+++++.+.+. .+.+++
T Consensus 174 ~~t~ID~~tm~V~~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei 251 (459)
T d1fwxa2 174 VFTAVDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 251 (459)
T ss_dssp EEEEEETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred EEEEEecCCceEEEEeee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence 367889999988877763 34677899999999999876442 123333
Q ss_pred -------CCCC---eEEEEeecCCCCeeEEEEccCCCEEEEecCc---EEEEECCCCcee-----------EEeecCCCC
Q 036605 102 -------SEMG---EVIREFKASEKPISSSAFLCEEKIFALASSE---VRILSLENGEEV-----------LKFSDDVGP 157 (340)
Q Consensus 102 -------~~~~---~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~---i~i~d~~~~~~~-----------~~~~~~~~~ 157 (340)
.... ..+..+... ...+.+.++|||+++++++.- +.++|++.-..+ ..-....-.
T Consensus 252 ngV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg 330 (459)
T d1fwxa2 252 NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG 330 (459)
T ss_dssp TTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC
T ss_pred CCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcC
Confidence 2211 111112222 235678999999999886554 999998632111 111112234
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEEccCC----CCCccCC--ceeeecCCCeeeeeecCC-CCCCCCEEEEEeC
Q 036605 158 LQYVSASDGAKIIITAGYGEKHLQVWRCDIS----SKTVNKG--PALSMRHSPVAIDCKNSP-NGEDGTVILAVAE 226 (340)
Q Consensus 158 v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~s~ 226 (340)
...-+|+..| +.+++-.-|..|.-|++... .++.... -.+.+...+......-.. ..++|++|++...
T Consensus 331 PLht~fd~~g-~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk 405 (459)
T d1fwxa2 331 PLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 405 (459)
T ss_dssp EEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred ccccccCCCc-eEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecc
Confidence 4667898888 56666666999999998321 0111111 112222333333221111 2789999988753
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.32 E-value=0.022 Score=44.38 Aligned_cols=135 Identities=10% Similarity=0.044 Sum_probs=86.4
Q ss_pred CCcEEEEEccCCeeE-----EEecCCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCeeEEEEc
Q 036605 51 NGDILAVDVLTGEMK-----WKSTGRHPGGLAGLAFAKKGRSLHVVG-TNGMASEMKSEMGEVIREFKASEKPISSSAFL 124 (340)
Q Consensus 51 dg~i~i~d~~~~~~~-----~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~ 124 (340)
.+.|+-.+++..... ..+.. +...+.+++|+...+.|+... .++.|...++..+.....+......+..+++.
T Consensus 9 ~~~I~~~~ld~~~~~~~~~~~~~~~-~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD 87 (263)
T d1npea_ 9 TGKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALD 87 (263)
T ss_dssp EEEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEE
T ss_pred CCeEEEEECCCcccccccccccccc-CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEe
Confidence 346777776544311 11222 334578899998888887765 45789888887665544444444568899998
Q ss_pred cCCCEEEEecC---cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 125 CEEKIFALASS---EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 125 ~~~~~l~~~~~---~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
.-+..|+.++. .|.+.++........+......+..++++|...+++....+.+..+||..+
T Consensus 88 ~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~ 152 (263)
T d1npea_ 88 HLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (263)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred ccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence 87777765433 399999876543332333346788999999887887755433444566554
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.27 E-value=0.026 Score=44.15 Aligned_cols=188 Identities=11% Similarity=0.112 Sum_probs=116.8
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC-eEEEEeecCC----CCe
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMG-EVIREFKASE----KPI 118 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~----~~i 118 (340)
.||.-+ ..++.+||+++.+.+..+. ....|.-=.|-. .+.|+.... ..|+-|+++.. .+...|..|. ..|
T Consensus 76 IiALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis-~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QI 150 (327)
T d1utca2 76 VIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWIS-LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQI 150 (327)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEESS-SSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEE
T ss_pred EEEEec-CCeEEEEehhHhhhhceEE--cCCCcEEEEecC-CCEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceE
Confidence 777765 5689999999998888777 455787778874 445555544 48999999542 3555565543 346
Q ss_pred eEEEEccCCCEEEEec---------CcEEEEECCCCceeEEeecCCCCeEEEEECCC--CCEEEEEEc---CCCeEEEEE
Q 036605 119 SSSAFLCEEKIFALAS---------SEVRILSLENGEEVLKFSDDVGPLQYVSASDG--AKIIITAGY---GEKHLQVWR 184 (340)
Q Consensus 119 ~~l~~~~~~~~l~~~~---------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~---~d~~i~iwd 184 (340)
-....++++++++..+ |.+.+|..+.+ .-+.+.+|...-..+.+..+ ...+++-+. ..+.++|.+
T Consensus 151 InY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiE 229 (327)
T d1utca2 151 INYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE 229 (327)
T ss_dssp EEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEE
Confidence 6677889999886521 23889988766 45667777655444444322 122332222 246889999
Q ss_pred ccCCC-C-CccCCceeeecCC-------CeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCCCCccC
Q 036605 185 CDISS-K-TVNKGPALSMRHS-------PVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 185 ~~~~~-~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 242 (340)
+.... + .....-...+..+ |..+.+ ++....++..+.-|.|++||+.++..+.
T Consensus 230 ig~~~~g~~~f~kk~vdi~fppea~~DFPvamqv-----s~kygiiyviTK~G~i~lyDleTgt~i~ 291 (327)
T d1utca2 230 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-----SEKHDVVFLITKYGYIHLYDLETGTCIY 291 (327)
T ss_dssp CSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEE-----ETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred cCCCccCCCCCcceeEEEECCccccCCcEEEEEe-----eccCCEEEEEecCcEEEEEEcccccEEE
Confidence 85321 1 1111111111111 222223 5566788889999999999999987665
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.031 Score=43.55 Aligned_cols=155 Identities=6% Similarity=-0.068 Sum_probs=99.6
Q ss_pred CCeEEEEeeccccccccccCceEEE-EEcCCCcEEEEEccCCe----eEEEecCCCCCCeEEEEEecCCCEEEEEe-CCC
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLA-LGTSNGDILAVDVLTGE----MKWKSTGRHPGGLAGLAFAKKGRSLHVVG-TNG 95 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~-~g~~dg~i~i~d~~~~~----~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg 95 (340)
..+..++|.+... .|+ +-...+.|.-.++.... ....+.. ....+.++++.+.+..|+.+. ..+
T Consensus 30 ~~~~~id~d~~~~---------~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~p~glAvD~~~~~lY~~d~~~~ 99 (266)
T d1ijqa1 30 RNVVALDTEVASN---------RIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLG 99 (266)
T ss_dssp SSEEEEEEETTTT---------EEEEEETTTTEEEEEEC--------CEEEECS-SCSCCCEEEEETTTTEEEEEETTTT
T ss_pred CceEEEEEEeCCC---------EEEEEECCCCEEEEEEecCCCCCcceEEEEeC-CCCCcceEEEeeccceEEEEecCCC
Confidence 4567888887765 344 44456667766654321 1122222 334577899988777777765 447
Q ss_pred cEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--C--cEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEE
Q 036605 96 MASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--S--EVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIII 171 (340)
Q Consensus 96 ~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 171 (340)
.|.+.++........+.........++++|...+++..+ . .|.-.++............-.....+++++.+..|+
T Consensus 100 ~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lY 179 (266)
T d1ijqa1 100 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 179 (266)
T ss_dssp EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred EEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEE
Confidence 899999987665555555556788999999766665432 2 266667654433322333346678999999888888
Q ss_pred EEEcCCCeEEEEEcc
Q 036605 172 TAGYGEKHLQVWRCD 186 (340)
Q Consensus 172 s~~~~d~~i~iwd~~ 186 (340)
.+....+.|...+++
T Consensus 180 w~d~~~~~I~~~~~d 194 (266)
T d1ijqa1 180 WVDSKLHSISSIDVN 194 (266)
T ss_dssp EEETTTTEEEEEETT
T ss_pred EecCCcCEEEEEECC
Confidence 877767888888873
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.14 E-value=0.027 Score=46.16 Aligned_cols=97 Identities=10% Similarity=0.058 Sum_probs=60.7
Q ss_pred CccCCCCceeeeeeCCCCCCCCCeEEEEeeccccccccccCceEEEEEcCC-CcEEEEEccCCeeEEEecCCCCCCeEEE
Q 036605 1 IWSTNDGSLLAEWKQPDGEPVVSYSCLACGFVGKKRRKERGTLLLALGTSN-GDILAVDVLTGEMKWKSTGRHPGGLAGL 79 (340)
Q Consensus 1 vwd~~~g~~~~~~~~~~~~~~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~d-g~i~i~d~~~~~~~~~~~~~h~~~v~~v 79 (340)
+||+.+++....-... ..+...+...++.++++ +++.|+.+ ..+.+||..+......-.......-...
T Consensus 56 ~yd~~t~~w~~~~~~~-~~~~~~~~~~~~~~~g~---------i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~ 125 (387)
T d1k3ia3 56 SWDPSTGIVSDRTVTV-TKHDMFCPGISMDGNGQ---------IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSS 125 (387)
T ss_dssp EECTTTCCBCCCEEEE-CSCCCSSCEEEECTTSC---------EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEE
T ss_pred EEECCCCcEeecCCCC-CCcccceeEEEEecCCc---------EEEeecCCCcceeEecCccCcccccccccccccccce
Confidence 4777777644211100 12334455677889999 88887655 6899999998764422111111122456
Q ss_pred EEecCCCEEEEEeCC------CcEEEEeCCCCeE
Q 036605 80 AFAKKGRSLHVVGTN------GMASEMKSEMGEV 107 (340)
Q Consensus 80 ~~~~~~~~l~s~~~d------g~i~~wd~~~~~~ 107 (340)
+..+||+.++.++.+ ..+.+||+.+.+-
T Consensus 126 ~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 126 ATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp EECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred eeecCCceeeeccccccccccceeeeecCCCCce
Confidence 667789988888753 3689999987753
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.07 E-value=0.08 Score=46.11 Aligned_cols=99 Identities=17% Similarity=0.177 Sum_probs=61.3
Q ss_pred CCcEEEEEccCCeeEEEecCCC------------------------------------CCCe-EEEEEecCCCEEEEEeC
Q 036605 51 NGDILAVDVLTGEMKWKSTGRH------------------------------------PGGL-AGLAFAKKGRSLHVVGT 93 (340)
Q Consensus 51 dg~i~i~d~~~~~~~~~~~~~h------------------------------------~~~v-~~v~~~~~~~~l~s~~~ 93 (340)
.|.|.-+|+.+|+.++++.... .+.+ ...++.+....++.+..
T Consensus 175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg 254 (571)
T d2ad6a1 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG 254 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence 6789999999999999764210 1112 23466677777666544
Q ss_pred ----------------CCcEEEEeCCCCeEEEEeecCCCCee---------EEEEccCCCE---EEEec--CcEEEEECC
Q 036605 94 ----------------NGMASEMKSEMGEVIREFKASEKPIS---------SSAFLCEEKI---FALAS--SEVRILSLE 143 (340)
Q Consensus 94 ----------------dg~i~~wd~~~~~~~~~~~~~~~~i~---------~l~~~~~~~~---l~~~~--~~i~i~d~~ 143 (340)
...+...|+++|+.+..++.....+. ...+..+++. ++..+ +.++++|..
T Consensus 255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~ 334 (571)
T d2ad6a1 255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE 334 (571)
T ss_dssp CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred cccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC
Confidence 24678889999998887764332221 1222334432 23333 338899998
Q ss_pred CCceeE
Q 036605 144 NGEEVL 149 (340)
Q Consensus 144 ~~~~~~ 149 (340)
+|+.+.
T Consensus 335 tG~~i~ 340 (571)
T d2ad6a1 335 NGNLIV 340 (571)
T ss_dssp TCCEEE
T ss_pred CCcEee
Confidence 888764
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.06 E-value=0.08 Score=46.00 Aligned_cols=128 Identities=10% Similarity=0.120 Sum_probs=79.5
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCC---------------------------------CC--eEEEEEecCCCEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHP---------------------------------GG--LAGLAFAKKGRSL 88 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~---------------------------------~~--v~~v~~~~~~~~l 88 (340)
.++.+..+|.++++|..+|+.++....... +. -...+++|+...+
T Consensus 316 ~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~ 395 (560)
T d1kv9a2 316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV 395 (560)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred eeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCee
Confidence 788899999999999999997765422110 00 0145677777776
Q ss_pred EEEeC------------------------------------CCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEE
Q 036605 89 HVVGT------------------------------------NGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFAL 132 (340)
Q Consensus 89 ~s~~~------------------------------------dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 132 (340)
+.... .|.+.-||+.+|+.+.+..... +...-.+.-.+.+++.
T Consensus 396 yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~ 474 (560)
T d1kv9a2 396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQ 474 (560)
T ss_dssp EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEE
T ss_pred ecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEE
Confidence 65432 2468889999999887765432 2222122333455555
Q ss_pred e--cCcEEEEECCCCceeEEeecCCCC-eEEEEECCCCC-EEEE
Q 036605 133 A--SSEVRILSLENGEEVLKFSDDVGP-LQYVSASDGAK-IIIT 172 (340)
Q Consensus 133 ~--~~~i~i~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~-~l~s 172 (340)
+ ++.++.+|.++|+.+-++...... -.-+.|..+|+ ||+.
T Consensus 475 G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v 518 (560)
T d1kv9a2 475 GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAI 518 (560)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred ECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 4 455999999999999777432211 11245555775 4444
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.98 E-value=0.098 Score=45.56 Aligned_cols=128 Identities=9% Similarity=0.095 Sum_probs=78.6
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCC---------------------------------CC-CeEEEEEecCCCEEE
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRH---------------------------------PG-GLAGLAFAKKGRSLH 89 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h---------------------------------~~-~v~~v~~~~~~~~l~ 89 (340)
.++.++.+|.++++|..+|+.+....... .+ .-..++++|+...++
T Consensus 329 ~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~y 408 (573)
T d1kb0a2 329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVY 408 (573)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEE
T ss_pred eeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEE
Confidence 78889999999999999999776543200 00 011246777766666
Q ss_pred EEeCC-------------------------------------------CcEEEEeCCCCeEEEEeecCCCCeeEEEEccC
Q 036605 90 VVGTN-------------------------------------------GMASEMKSEMGEVIREFKASEKPISSSAFLCE 126 (340)
Q Consensus 90 s~~~d-------------------------------------------g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~ 126 (340)
....+ |.+.-||+.+|+.+...+... +...=.++-.
T Consensus 409 v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lsta 487 (573)
T d1kb0a2 409 LPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTA 487 (573)
T ss_dssp EEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEET
T ss_pred eeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEEEc
Confidence 53221 357788999999887765432 2111122334
Q ss_pred CCEEEEe--cCcEEEEECCCCceeEEeecCCCCe-EEEEECCCCC-EEEE
Q 036605 127 EKIFALA--SSEVRILSLENGEEVLKFSDDVGPL-QYVSASDGAK-IIIT 172 (340)
Q Consensus 127 ~~~l~~~--~~~i~i~d~~~~~~~~~~~~~~~~v-~~~~~s~~~~-~l~s 172 (340)
+.+++++ ++.++.+|.++|+.+-++....... .-+.|..+|+ |++.
T Consensus 488 gglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v 537 (573)
T d1kb0a2 488 GNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (573)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 5666654 4459999999999997774322111 1144555776 4444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.053 Score=42.09 Aligned_cols=152 Identities=6% Similarity=-0.064 Sum_probs=95.6
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEe--CCCcEEEE
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVG--TNGMASEM 100 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~dg~i~~w 100 (340)
.+..|++.+.+. .+..+-...+.|.+.++........+.. .......++++|...+|+... ..+.|...
T Consensus 78 ~p~glAvD~~~~--------~lY~~d~~~~~I~v~~~~g~~~~~~~~~-~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~ 148 (266)
T d1ijqa1 78 APDGLAVDWIHS--------NIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 148 (266)
T ss_dssp CCCEEEEETTTT--------EEEEEETTTTEEEEEETTSSSEEEEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CcceEEEeeccc--------eEEEEecCCCEEEeEecCCceEEEEEcC-CCCCcceEEEEcccCeEEEeccCCCcceeEe
Confidence 455677765553 0455556678899999876654444444 556789999999777777654 34568777
Q ss_pred eCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecC---cEEEEECCCCceeEEeecC--CCCeEEEEECCCCCEEEEEEc
Q 036605 101 KSEMGEVIREFKASEKPISSSAFLCEEKIFALASS---EVRILSLENGEEVLKFSDD--VGPLQYVSASDGAKIIITAGY 175 (340)
Q Consensus 101 d~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~---~i~i~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~ 175 (340)
++............-.....+++.+.+..|+.++. .|...++........+... ......+++. +.+|+.+..
T Consensus 149 ~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~ 226 (266)
T d1ijqa1 149 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDI 226 (266)
T ss_dssp ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEET
T ss_pred ccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEEC
Confidence 87655444334333455789999998887766543 3888888654332222222 2345567765 346666565
Q ss_pred CCCeEEEEEc
Q 036605 176 GEKHLQVWRC 185 (340)
Q Consensus 176 ~d~~i~iwd~ 185 (340)
.++.|...+.
T Consensus 227 ~~~~I~~~~~ 236 (266)
T d1ijqa1 227 INEAIFSANR 236 (266)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEEEC
Confidence 5677766664
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.88 E-value=0.024 Score=45.95 Aligned_cols=153 Identities=12% Similarity=0.075 Sum_probs=88.9
Q ss_pred eEEEEeeccccccccccCceEEEEEc------------CCCcEEEEEccCCee-EEE--ecCCCC----CCeEEEEE--e
Q 036605 24 YSCLACGFVGKKRRKERGTLLLALGT------------SNGDILAVDVLTGEM-KWK--STGRHP----GGLAGLAF--A 82 (340)
Q Consensus 24 v~~l~~sp~~~~~~~~~~~~~l~~g~------------~dg~i~i~d~~~~~~-~~~--~~~~h~----~~v~~v~~--~ 82 (340)
.-.|+..|+|. .+++++ ..|.|.++|+.+.+. ... +.+... -....+.. .
T Consensus 37 ~EDi~~~~dg~---------~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~ 107 (340)
T d1v04a_ 37 SEDLEILPNGL---------AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 107 (340)
T ss_dssp CCEEEECTTSE---------EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEEC
T ss_pred cceEEECCCCc---------EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEc
Confidence 34577788886 444432 148999999876542 111 121011 12244443 3
Q ss_pred cCCC-EEEEEe---CCCcEEEEeCCCC--eEEE--Eeec-CCCCeeEEEEccCCCEEEEecC-----------------c
Q 036605 83 KKGR-SLHVVG---TNGMASEMKSEMG--EVIR--EFKA-SEKPISSSAFLCEEKIFALASS-----------------E 136 (340)
Q Consensus 83 ~~~~-~l~s~~---~dg~i~~wd~~~~--~~~~--~~~~-~~~~i~~l~~~~~~~~l~~~~~-----------------~ 136 (340)
++|. +|++.. ...+|.+|++... +... .+.. .......+++..++.++++-+. .
T Consensus 108 ~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~ 187 (340)
T d1v04a_ 108 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW 187 (340)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCC
T ss_pred CCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCc
Confidence 4555 455553 3457777776433 2221 1221 1234688999999988888332 1
Q ss_pred EEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEcc
Q 036605 137 VRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCD 186 (340)
Q Consensus 137 i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~ 186 (340)
..+|....++. ......-...+.++++||+++|+.+....+.|++|++.
T Consensus 188 g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~ 236 (340)
T d1v04a_ 188 SFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 236 (340)
T ss_dssp EEEEEECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred eeEEEEcCCce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence 33444443332 22222234678999999999999888878999999984
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.86 E-value=0.1 Score=45.69 Aligned_cols=106 Identities=20% Similarity=0.203 Sum_probs=64.6
Q ss_pred EEEEEcC------CCcEEEEEccCCeeEEEecCCC------------------------------------CC-CeEEEE
Q 036605 44 LLALGTS------NGDILAVDVLTGEMKWKSTGRH------------------------------------PG-GLAGLA 80 (340)
Q Consensus 44 ~l~~g~~------dg~i~i~d~~~~~~~~~~~~~h------------------------------------~~-~v~~v~ 80 (340)
.+++|.. .|.|+-||..+|++++++.... .+ .-..++
T Consensus 168 ~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s 247 (596)
T d1w6sa_ 168 KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYA 247 (596)
T ss_dssp EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCE
T ss_pred eEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccc
Confidence 3556543 4899999999999999864210 01 113446
Q ss_pred EecCCCEEEEEeCC----------------CcEEEEeCCCCeEEEEeecCCCCe---------eEEE-EccCCC---EEE
Q 036605 81 FAKKGRSLHVVGTN----------------GMASEMKSEMGEVIREFKASEKPI---------SSSA-FLCEEK---IFA 131 (340)
Q Consensus 81 ~~~~~~~l~s~~~d----------------g~i~~wd~~~~~~~~~~~~~~~~i---------~~l~-~~~~~~---~l~ 131 (340)
+.+....++.+..+ ..|...|+.+|+.+..++.....+ ..+. ...+|+ .++
T Consensus 248 ~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~ 327 (596)
T d1w6sa_ 248 YDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLT 327 (596)
T ss_dssp EETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEE
T ss_pred cccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeecccccccccccee
Confidence 66777777765432 348889999999887765322211 1111 123443 334
Q ss_pred EecCc--EEEEECCCCceeE
Q 036605 132 LASSE--VRILSLENGEEVL 149 (340)
Q Consensus 132 ~~~~~--i~i~d~~~~~~~~ 149 (340)
..+.. ++++|-.+|+.+.
T Consensus 328 ~~~k~G~~~vlDr~tG~~i~ 347 (596)
T d1w6sa_ 328 HPDRNGIVYTLDRTDGALVS 347 (596)
T ss_dssp EECTTSEEEEEETTTCCEEE
T ss_pred ccccccceeeecCCCCceee
Confidence 44444 8899998888764
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.86 E-value=0.067 Score=46.64 Aligned_cols=128 Identities=15% Similarity=0.092 Sum_probs=75.7
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCC------------------------------------CCCCe--EEEEEecCC
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGR------------------------------------HPGGL--AGLAFAKKG 85 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~------------------------------------h~~~v--~~v~~~~~~ 85 (340)
.++.++.+|.++++|.++|+.+...... ..+.. ...+++|+.
T Consensus 318 ~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~ 397 (571)
T d2ad6a1 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred ceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCC
Confidence 6788999999999999999876542110 00000 125677777
Q ss_pred CEEEEEeCC-------------------------------------CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCC
Q 036605 86 RSLHVVGTN-------------------------------------GMASEMKSEMGEVIREFKASEKPISSSAFLCEEK 128 (340)
Q Consensus 86 ~~l~s~~~d-------------------------------------g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~ 128 (340)
..++....+ |.|.-+|+.+|+.+.+........... +.-.+.
T Consensus 398 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~Tagg 476 (571)
T d2ad6a1 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGT-LYTKGG 476 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBC-EEETTT
T ss_pred ceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcce-eEecCC
Confidence 766653322 467788889998887755332222222 222344
Q ss_pred EEEEec--CcEEEEECCCCceeEEeecCC-CCeEEEEECCCCC-EEEE
Q 036605 129 IFALAS--SEVRILSLENGEEVLKFSDDV-GPLQYVSASDGAK-IIIT 172 (340)
Q Consensus 129 ~l~~~~--~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~-~l~s 172 (340)
+++.++ +.++.+|.++|+.+-++.-.. ..-.-+.|..+|+ |+++
T Consensus 477 lVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v 524 (571)
T d2ad6a1 477 LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence 555544 449999999999997774322 1112245555775 4434
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.43 E-value=0.17 Score=41.09 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=73.8
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCC-----C------cEEEEEccCCeeEE--EecCCCCCCeEEEEEecCCCEEE
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSN-----G------DILAVDVLTGEMKW--KSTGRHPGGLAGLAFAKKGRSLH 89 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~d-----g------~i~i~d~~~~~~~~--~~~~~h~~~v~~v~~~~~~~~l~ 89 (340)
.+...+...+++ +++.|+.+ + .+.+||..++.... .....|.......++.+++..++
T Consensus 21 ~~~~a~~~~~gk---------v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v 91 (387)
T d1k3ia3 21 PAAAAIEPTSGR---------VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVV 91 (387)
T ss_dssp CSEEEEETTTTE---------EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEE
T ss_pred ccEEEEEeeCCE---------EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEE
Confidence 333444455677 78877743 1 36789999886322 12221333345667889999988
Q ss_pred EEeCC-CcEEEEeCCCCeEEEEeec-CCCCeeEEEEccCCCEEEEecC--------cEEEEECCCCc
Q 036605 90 VVGTN-GMASEMKSEMGEVIREFKA-SEKPISSSAFLCEEKIFALASS--------EVRILSLENGE 146 (340)
Q Consensus 90 s~~~d-g~i~~wd~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~--------~i~i~d~~~~~ 146 (340)
.|+.+ ..+.+||..+..-...-.. ....-...+..+||++++.++. ++.+||..+.+
T Consensus 92 ~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 92 TGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp ECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred eecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 88765 6899999988764322111 1122356778889999888653 38999998764
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.31 E-value=0.099 Score=45.38 Aligned_cols=142 Identities=12% Similarity=0.100 Sum_probs=83.6
Q ss_pred CcEEEEEccCCeeEEEecCCCCC--------CeEEEEEecCCC---EEEEEeCCCcEEEEeCCCCeEEEEeecCCC----
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPG--------GLAGLAFAKKGR---SLHVVGTNGMASEMKSEMGEVIREFKASEK---- 116 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~--------~v~~v~~~~~~~---~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---- 116 (340)
..|...|.++|+..+.++..|.+ ...-+....+++ .++.++.+|.+.++|..+|+.+........
T Consensus 270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~ 349 (560)
T d1kv9a2 270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE 349 (560)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence 45778899999988877652221 111122222443 566788899999999999998754321110
Q ss_pred --------------------------------CeeEEEEccCCCEEEEec------------------------------
Q 036605 117 --------------------------------PISSSAFLCEEKIFALAS------------------------------ 134 (340)
Q Consensus 117 --------------------------------~i~~l~~~~~~~~l~~~~------------------------------ 134 (340)
.-...+++|+..+++...
T Consensus 350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (560)
T d1kv9a2 350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (560)
T ss_dssp EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence 001345667666655411
Q ss_pred --------CcEEEEECCCCceeEEeecCCCCeEEEEECCCCCEEEEEEcCCCeEEEEEccCCCCCccCCce
Q 036605 135 --------SEVRILSLENGEEVLKFSDDVGPLQYVSASDGAKIIITAGYGEKHLQVWRCDISSKTVNKGPA 197 (340)
Q Consensus 135 --------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~d~~i~iwd~~~~~~~~~~~~~ 197 (340)
+.|.-||+.+++.+-++.... +...-.+.-.+..++.+.. |+.++.+|. .+++.+-...
T Consensus 430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~-dg~l~A~Da--~tGe~LW~~~ 496 (560)
T d1kv9a2 430 DVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTA-AGQMHAYSA--DKGEALWQFE 496 (560)
T ss_dssp CCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECT-TSEEEEEET--TTCCEEEEEE
T ss_pred CCCCcccccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECC-CCcEEEEEC--CCCcEeEEEE
Confidence 126788999998775553221 1111122223456666554 999999998 6777654443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.59 E-value=0.63 Score=40.33 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=48.8
Q ss_pred CcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEec--CcEEEEECCCCceeEEeecCCCC-eEEEEECCCCC-EE
Q 036605 95 GMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALAS--SEVRILSLENGEEVLKFSDDVGP-LQYVSASDGAK-II 170 (340)
Q Consensus 95 g~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~~i~i~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~-~l 170 (340)
|.|.-+|+.+|+.+.+...+. ++..-.++-.+.+++.++ +.++.+|.++|+.+-++...... -.-+.|..+|+ |+
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv 544 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 568889999999887766433 222222334555666654 44999999999999777532211 11256666775 55
Q ss_pred EEE
Q 036605 171 ITA 173 (340)
Q Consensus 171 ~s~ 173 (340)
+..
T Consensus 545 ~i~ 547 (582)
T d1flga_ 545 GVT 547 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.43 E-value=0.51 Score=38.30 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=86.7
Q ss_pred CCCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccC-----------CeeEEEecCCCCCCeEEEEEecCCCEEE
Q 036605 21 VVSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLT-----------GEMKWKSTGRHPGGLAGLAFAKKGRSLH 89 (340)
Q Consensus 21 ~~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~-----------~~~~~~~~~~h~~~v~~v~~~~~~~~l~ 89 (340)
......|+.++... ++++|+.++ +.|..++. ........ -..|..++|+.+ .|+
T Consensus 36 ~~~~~LLAVsn~~G---------Ll~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~---ip~v~~vafs~d--~l~ 100 (381)
T d1xipa_ 36 FASLQNLDISNSKS---------LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE---IPDVIFVCFHGD--QVL 100 (381)
T ss_dssp SSCCBCEEEETTTT---------EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE---CTTEEEEEEETT--EEE
T ss_pred ccccceEEEeCCCC---------EEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC---CCCeEEEEeeCC--EEE
Confidence 35677888887666 788888775 56666321 11111111 125889999854 455
Q ss_pred EEeCCCcEEEEeCCCCeEEEEeecCCCCeeEEEEccCCCEEEEecCcEEEEECCCCceeEE------eecCCCCeEEEEE
Q 036605 90 VVGTNGMASEMKSEMGEVIREFKASEKPISSSAFLCEEKIFALASSEVRILSLENGEEVLK------FSDDVGPLQYVSA 163 (340)
Q Consensus 90 s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~~i~i~d~~~~~~~~~------~~~~~~~v~~~~~ 163 (340)
. ..++.+..++..+-........-..++.++.++|....++...+.+.++++..++.... +.. .+.+.+++|
T Consensus 101 v-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~v~w 178 (381)
T d1xipa_ 101 V-STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDV-TNSQLAVLL 178 (381)
T ss_dssp E-EESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEE-CSSEEEEEE
T ss_pred E-EeCCCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEe-cCCceEEEE
Confidence 4 34556777777654433343444567888888887666666777899999988754321 111 256788888
Q ss_pred CCCCCEEEEE
Q 036605 164 SDGAKIIITA 173 (340)
Q Consensus 164 s~~~~~l~s~ 173 (340)
++.|..++++
T Consensus 179 s~kgkq~v~~ 188 (381)
T d1xipa_ 179 KDRSFQSFAW 188 (381)
T ss_dssp TTSCEEEEEE
T ss_pred eCCcEEEEEe
Confidence 8888888774
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.33 E-value=0.61 Score=38.59 Aligned_cols=99 Identities=12% Similarity=0.013 Sum_probs=62.3
Q ss_pred CCeEEEEeeccccccccccCceEEEEEc-----CCCcEEEEEccCCeeEEE-ecCCCCCCeEEEEEecCCCEEEEEeCC-
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGT-----SNGDILAVDVLTGEMKWK-STGRHPGGLAGLAFAKKGRSLHVVGTN- 94 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~-----~dg~i~i~d~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d- 94 (340)
-.+...++||+++ ++|.+- ....|+++|+.+++.+.. +.. .....++|.+|++.|+....+
T Consensus 125 ~~~~~~~~Spd~~---------~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~---~~~~~~~W~~D~~~~~Y~~~~~ 192 (430)
T d1qfma1 125 VALRGYAFSEDGE---------YFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTHDGKGMFYNAYPQ 192 (430)
T ss_dssp EEEEEEEECTTSS---------EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECTTSSEEEEEECCC
T ss_pred ceecceEecCCCC---------EEEEEeccccCchheeEEeccCcceeccccccc---ccccceEEcCCCCEEEEEEecc
Confidence 3345667899998 666432 234799999999986542 221 123568999999987765432
Q ss_pred ---------------CcEEEEeCCCCeE--EEEeecCC--CCeeEEEEccCCCEEEE
Q 036605 95 ---------------GMASEMKSEMGEV--IREFKASE--KPISSSAFLCEEKIFAL 132 (340)
Q Consensus 95 ---------------g~i~~wd~~~~~~--~~~~~~~~--~~i~~l~~~~~~~~l~~ 132 (340)
..|..+.+.+... ...+.... ..+..+..++++++++.
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i 249 (430)
T d1qfma1 193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (430)
T ss_dssp CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred ccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence 2577777765431 22333322 33566778999998864
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.32 E-value=0.79 Score=39.81 Aligned_cols=106 Identities=14% Similarity=0.256 Sum_probs=66.2
Q ss_pred EEEcCCCcEEEEEc-cCCeeEEEecCCCC---------C-CeEEEEEecC----CCEEEEEeCCCcEEEEeCCCCeEEEE
Q 036605 46 ALGTSNGDILAVDV-LTGEMKWKSTGRHP---------G-GLAGLAFAKK----GRSLHVVGTNGMASEMKSEMGEVIRE 110 (340)
Q Consensus 46 ~~g~~dg~i~i~d~-~~~~~~~~~~~~h~---------~-~v~~v~~~~~----~~~l~s~~~dg~i~~wd~~~~~~~~~ 110 (340)
++.+..+.|...|. ++|+.++++..... . .-+.+++.++ +..++.++.|+.|.-.|..+|+.+..
T Consensus 67 ~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~ 146 (596)
T d1w6sa_ 67 IHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWK 146 (596)
T ss_dssp EECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCceecc
Confidence 34455688999997 58999998853111 0 1134555443 34688889999999999999999887
Q ss_pred eecCCC----CeeE-EEEccCCCEEEEe-------cCcEEEEECCCCceeEEee
Q 036605 111 FKASEK----PISS-SAFLCEEKIFALA-------SSEVRILSLENGEEVLKFS 152 (340)
Q Consensus 111 ~~~~~~----~i~~-l~~~~~~~~l~~~-------~~~i~i~d~~~~~~~~~~~ 152 (340)
+..... .++. ..+. ++..++.. .+.|+-||+.+|+.+-++.
T Consensus 147 ~~~~d~~~~~~~t~~P~v~-~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 147 VENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp EECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccccCCcEE-CCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence 753211 1111 1111 23333321 1449999999999886653
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.24 E-value=0.025 Score=49.54 Aligned_cols=80 Identities=15% Similarity=0.298 Sum_probs=56.6
Q ss_pred CCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCe-eEEEEccCCC-
Q 036605 51 NGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPI-SSSAFLCEEK- 128 (340)
Q Consensus 51 dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i-~~l~~~~~~~- 128 (340)
.|.|.-+|+.+|+.+++... + .++..-..+..+.++++++.||.++.+|..+|+.+.+++...... .-+.+..+|+
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~-~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKE-H-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEE-S-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCeEEEEcCCCCcEEeecCC-C-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 37799999999999998874 2 223222234467888999999999999999999998887533221 1255667775
Q ss_pred EEEE
Q 036605 129 IFAL 132 (340)
Q Consensus 129 ~l~~ 132 (340)
++++
T Consensus 543 Yv~i 546 (582)
T d1flga_ 543 YLGV 546 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.66 E-value=0.66 Score=35.55 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=9.7
Q ss_pred CcEEEEEccCCeeE
Q 036605 52 GDILAVDVLTGEMK 65 (340)
Q Consensus 52 g~i~i~d~~~~~~~ 65 (340)
..+.+||..+....
T Consensus 70 ~~~~~yd~~~~~w~ 83 (288)
T d1zgka1 70 SALDCYNPMTNQWS 83 (288)
T ss_dssp CCEEEEETTTTEEE
T ss_pred chhhhccccccccc
Confidence 46788898776543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.21 E-value=1 Score=35.98 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=79.6
Q ss_pred cEEEEEccC-CeeEEEecCC------CCCCeEEEEE--ecC-CC-EEEEEeCCCcEEEEeCC---CC----eEEEEeecC
Q 036605 53 DILAVDVLT-GEMKWKSTGR------HPGGLAGLAF--AKK-GR-SLHVVGTNGMASEMKSE---MG----EVIREFKAS 114 (340)
Q Consensus 53 ~i~i~d~~~-~~~~~~~~~~------h~~~v~~v~~--~~~-~~-~l~s~~~dg~i~~wd~~---~~----~~~~~~~~~ 114 (340)
+|.+|.+.. ...+..+... -...++.+|+ ++. +. +++....+|.+..|.+. .+ +.++.|..
T Consensus 100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~- 178 (353)
T d1h6la_ 100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM- 178 (353)
T ss_dssp EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-
T ss_pred eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-
Confidence 577787653 2233333320 1124677777 554 44 45666778998888652 23 34445543
Q ss_pred CCCeeEEEEccCCCEEEEecCc--EEEEECCC-----CceeEEee--cCCCCeEEEEE--CCC-CCEEEEEEcCCCeEEE
Q 036605 115 EKPISSSAFLCEEKIFALASSE--VRILSLEN-----GEEVLKFS--DDVGPLQYVSA--SDG-AKIIITAGYGEKHLQV 182 (340)
Q Consensus 115 ~~~i~~l~~~~~~~~l~~~~~~--i~i~d~~~-----~~~~~~~~--~~~~~v~~~~~--s~~-~~~l~s~~~~d~~i~i 182 (340)
...+..+.+.+....|+.+... ++.+++.. +..+.... .....+..+++ .++ ..||++++.++++..|
T Consensus 179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v 258 (353)
T d1h6la_ 179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI 258 (353)
T ss_dssp SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence 4467888999998888887766 44445431 12222221 23467777775 233 3388888888999999
Q ss_pred EEc
Q 036605 183 WRC 185 (340)
Q Consensus 183 wd~ 185 (340)
||.
T Consensus 259 ydr 261 (353)
T d1h6la_ 259 YER 261 (353)
T ss_dssp EES
T ss_pred Eec
Confidence 996
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.20 E-value=0.074 Score=46.38 Aligned_cols=75 Identities=16% Similarity=0.298 Sum_probs=52.8
Q ss_pred CcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCee-EEEEccCCC
Q 036605 52 GDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPIS-SSAFLCEEK 128 (340)
Q Consensus 52 g~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~-~l~~~~~~~ 128 (340)
|.|.-||+.+|+.++++.. ..+...=..+..+.++++++.||.++.+|..+|+.+.++........ -+.+..+|+
T Consensus 457 G~l~AiD~~tGk~~W~~~~--~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk 532 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR 532 (573)
T ss_dssp EEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred ccEEEeCCCCCceEeeecC--CCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 5789999999999998864 22222212333688999999999999999999999988765332111 144555675
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.44 E-value=1.4 Score=34.99 Aligned_cols=120 Identities=5% Similarity=-0.053 Sum_probs=69.0
Q ss_pred CCCcEEEEEccCCe--e--EEEecCCCCCCeEEEEEecCCCEEEEEeC-----------------CCcEEEEeCCCCeEE
Q 036605 50 SNGDILAVDVLTGE--M--KWKSTGRHPGGLAGLAFAKKGRSLHVVGT-----------------NGMASEMKSEMGEVI 108 (340)
Q Consensus 50 ~dg~i~i~d~~~~~--~--~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----------------dg~i~~wd~~~~~~~ 108 (340)
...+|.+|++.... . ...+........+++++..++..++|-.. -+.+..||. +...
T Consensus 122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~~~~ 199 (340)
T d1v04a_ 122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR 199 (340)
T ss_dssp TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--SCEE
T ss_pred CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--CceE
Confidence 45677777765433 2 22333323346789999988887777211 123444554 3322
Q ss_pred EEeecCCCCeeEEEEccCCCEEEEec---CcEEEEECCCCceeEE--eecCCCCeEEEEECCC-CCEEEE
Q 036605 109 REFKASEKPISSSAFLCEEKIFALAS---SEVRILSLENGEEVLK--FSDDVGPLQYVSASDG-AKIIIT 172 (340)
Q Consensus 109 ~~~~~~~~~i~~l~~~~~~~~l~~~~---~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~-~~~l~s 172 (340)
.... .-.....|+++|++++|+++. +.|+.|++.....+.. +..-.+..-.+.+.+. |.+.+.
T Consensus 200 ~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva 268 (340)
T d1v04a_ 200 VVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG 268 (340)
T ss_dssp EEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred EEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence 2222 234578999999999887743 4499999875443322 2223455677888764 444443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=92.17 E-value=2.2 Score=33.96 Aligned_cols=186 Identities=10% Similarity=0.112 Sum_probs=97.3
Q ss_pred EEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEec----CCC--EEEEEeC--CC--cEEEEeCCC-CeEEEEee
Q 036605 44 LLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAK----KGR--SLHVVGT--NG--MASEMKSEM-GEVIREFK 112 (340)
Q Consensus 44 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~----~~~--~l~s~~~--dg--~i~~wd~~~-~~~~~~~~ 112 (340)
+++.....+-|++||+. |+.+..+.. +.++.|..-. .+. .++.++. ++ .|.+|.+.. ...+..+.
T Consensus 42 lI~gTdK~~Gl~vYdL~-G~~l~~~~~---Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~ 117 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSLE-GKMLHSYHT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT 117 (353)
T ss_dssp EEEEEETTSCCEEEETT-CCEEEECCS---SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred EEEEEcCcCCEEEEcCC-CcEEEeccc---CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence 55555566669999985 777766653 5777666442 222 3444442 22 576776642 22333332
Q ss_pred cC-------CCCeeEEEE--ccC-CCEE-EEec--CcEEEEEC---CCC----ceeEEeecCCCCeEEEEECCCCCEEEE
Q 036605 113 AS-------EKPISSSAF--LCE-EKIF-ALAS--SEVRILSL---ENG----EEVLKFSDDVGPLQYVSASDGAKIIIT 172 (340)
Q Consensus 113 ~~-------~~~i~~l~~--~~~-~~~l-~~~~--~~i~i~d~---~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s 172 (340)
.. ...++.+|+ ++. +.+. ++.+ +.+..|.+ ..+ +.++.|.. ...+..+.+.+....|+.
T Consensus 118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~Lyi 196 (353)
T d1h6la_ 118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSLYI 196 (353)
T ss_dssp CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCcEEE
Confidence 21 124667776 554 4443 3333 23666655 333 23355543 457889999999888888
Q ss_pred EEcCCCeEEEEEccCCCCCccCCceeee-----cCCCeeeeeecCCCCCCCCEEEEEeCCCcEEEEECCC
Q 036605 173 AGYGEKHLQVWRCDISSKTVNKGPALSM-----RHSPVAIDCKNSPNGEDGTVILAVAESGVAYSWDLKT 237 (340)
Q Consensus 173 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~s~dg~i~vwd~~~ 237 (340)
+-. +.-|..++.+...... ....... ...+.-+.+...- ..+|.+|++.-.+++..+||...
T Consensus 197 sEE-~~Giw~~~a~~~~~~~-~~~i~~~~g~~l~~D~EGlaiy~~~-~~~GylivSsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 197 AEE-DEAIWKFSAEPDGGSN-GTVIDRADGRHLTPDIEGLTIYYAA-DGKGYLLASSQGNSSYAIYERQG 263 (353)
T ss_dssp EET-TTEEEEEESSTTSCSC-CEEEEECSSSSCCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESST
T ss_pred ecC-ccceEEEEeccCCCcc-ceeeecccCccccCCccccEEEEcC-CCCeEEEEEcCCCCeEEEEecCC
Confidence 545 5555445543222111 1111111 1111222221111 23455566666788899999865
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.83 E-value=2.2 Score=33.10 Aligned_cols=181 Identities=9% Similarity=0.142 Sum_probs=108.2
Q ss_pred EEEEEc---CCCcEEEEEccCCee-EEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCee
Q 036605 44 LLALGT---SNGDILAVDVLTGEM-KWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKASEKPIS 119 (340)
Q Consensus 44 ~l~~g~---~dg~i~i~d~~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 119 (340)
++++-- ....|.|.|+.++.. .++--. --+.-.+|..+.|+.-+ ...+.++|+++.+.+..+...+ +|.
T Consensus 34 yicVRe~~~~~~~VvIidl~n~~~~~Rrpi~-----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~Vv 106 (327)
T d1utca2 34 FICIREKVGEQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVT 106 (327)
T ss_dssp EEEEEEEETTEEEEEEEETTSTTSCEEEECC-----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCC
T ss_pred EEEEEeccCCCceEEEEECCCCCcceecccc-----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcE
Confidence 566432 334788999887653 322221 12334578888777765 5589999999998887776544 555
Q ss_pred EEEEccCCCEEEEecCcEEEEECCCC-ceeEEeecCC----CCeEEEEECCCCCEEEEEEcC------CCeEEEEEccCC
Q 036605 120 SSAFLCEEKIFALASSEVRILSLENG-EEVLKFSDDV----GPLQYVSASDGAKIIITAGYG------EKHLQVWRCDIS 188 (340)
Q Consensus 120 ~l~~~~~~~~l~~~~~~i~i~d~~~~-~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~~------d~~i~iwd~~~~ 188 (340)
--.|-.+..+-++.+..|+-|+++.. .+..-|.-|. ..|..-..+++.++++..|-. .|.+.+|...
T Consensus 107 fWkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-- 184 (327)
T d1utca2 107 FWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-- 184 (327)
T ss_dssp EEEESSSSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT--
T ss_pred EEEecCCCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec--
Confidence 56666665555667777999999543 3445555443 456777779999988765532 4678899872
Q ss_pred CCCccCCceeeecCCCeeeeeecCCCCCCCC-EEEEE---eCCCcEEEEECCCC
Q 036605 189 SKTVNKGPALSMRHSPVAIDCKNSPNGEDGT-VILAV---AESGVAYSWDLKTV 238 (340)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~---s~dg~i~vwd~~~~ 238 (340)
. .....+. +|......+...- .+... .++.+ ...+++++-++...
T Consensus 185 r-~~sQ~ie---Ghaa~F~~~~~~g-~~~~~~lf~fa~r~~~~~kLhIiEig~~ 233 (327)
T d1utca2 185 R-KVSQPIE---GHAASFAQFKMEG-NAEESTLFCFAVRGQAGGKLHIIEVGTP 233 (327)
T ss_dssp T-TEEEEEC---CSEEEEEEECCTT-CSSCEEEEEEEEEETTEEEEEEEECSCC
T ss_pred c-CcCcccc---ceeeeeEEEEcCC-CCCCceEEEEEECCCCCcEEEEEEcCCC
Confidence 2 2222222 4444333331111 12222 22222 23368999998763
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.77 E-value=3.8 Score=33.87 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=41.3
Q ss_pred CCeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeE--EEecC-----CCCCCeEEEEEecC---CCEEEE
Q 036605 22 VSYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMK--WKSTG-----RHPGGLAGLAFAKK---GRSLHV 90 (340)
Q Consensus 22 ~~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~~~-----~h~~~v~~v~~~~~---~~~l~s 90 (340)
..-++|+|.|+++ +|++--..|.|++++..+++.. ..+.. .-++....|+|+|+ ..+++.
T Consensus 27 ~~P~~la~~pdg~---------llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv 96 (450)
T d1crua_ 27 NKPHALLWGPDNQ---------IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI 96 (450)
T ss_dssp SSEEEEEECTTSC---------EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred CCceEEEEeCCCe---------EEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence 4667999999999 6666555799999998777532 22211 12457889999985 345554
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=87.67 E-value=3.9 Score=29.88 Aligned_cols=158 Identities=15% Similarity=0.047 Sum_probs=87.4
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC-CCCeeEEEEccCCCEEEE----ecCc--EEEEECCCCc
Q 036605 74 GGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFKAS-EKPISSSAFLCEEKIFAL----ASSE--VRILSLENGE 146 (340)
Q Consensus 74 ~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~----~~~~--i~i~d~~~~~ 146 (340)
-.|.+++.. +.+..++|+......+|-++.|+........ -+-|+.+ .+.+++. .++. +.+-|+.+|
T Consensus 104 vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI----~~d~I~G~g~~~g~~~sfF~adl~SG- 177 (313)
T d2hu7a1 104 MRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLSSG- 177 (313)
T ss_dssp BEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE----ETTEEEEEEEEETTEEEEEEEETTTE-
T ss_pred EEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec----cCCeEEEEeeecCCcceEEEEecccC-
Confidence 456666654 4567888888778888888888754332211 1223333 2555532 3333 667788777
Q ss_pred eeEEeecCCCCeEEEEECCCCCEEEEEEcC--CCeEEEEEccCCCCCccCCceeee-cCCCeeeeeecCCCCCCCCEEEE
Q 036605 147 EVLKFSDDVGPLQYVSASDGAKIIITAGYG--EKHLQVWRCDISSKTVNKGPALSM-RHSPVAIDCKNSPNGEDGTVILA 223 (340)
Q Consensus 147 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~--d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 223 (340)
.++.|....+.++...+.+..+. ++.-.. +....-+|++..+-+........+ ...+..+.+ ..+ .|++..++.
T Consensus 178 ~lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~-~~Y-~Pdd~L~ii 254 (313)
T d2hu7a1 178 GLRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITW-LGY-LPDGRLAVV 254 (313)
T ss_dssp EEEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEE-EEE-CTTSCEEEE
T ss_pred CEEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEe-eee-CCCCcEEEE
Confidence 45667767778888888887764 443322 223334566322211111111000 112222221 123 799999899
Q ss_pred EeCCCcEEEEECCCCCccC
Q 036605 224 VAESGVAYSWDLKTVSQDE 242 (340)
Q Consensus 224 ~s~dg~i~vwd~~~~~~~~ 242 (340)
+-.||.-.+|. +++.+.
T Consensus 255 akrdG~s~lF~--nGk~in 271 (313)
T d2hu7a1 255 ARREGRSAVFI--DGERVE 271 (313)
T ss_dssp EEETTEEEEEE--TTEEEC
T ss_pred EecCCchheee--cceEec
Confidence 99999999996 344444
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.05 E-value=8 Score=30.96 Aligned_cols=136 Identities=6% Similarity=-0.064 Sum_probs=79.7
Q ss_pred CeEEEEeeccccccccccCceEEEEEcCCCcEEEEEccCCeeEEEecCCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 036605 23 SYSCLACGFVGKKRRKERGTLLLALGTSNGDILAVDVLTGEMKWKSTGRHPGGLAGLAFAKKGRSLHVVGTNGMASEMKS 102 (340)
Q Consensus 23 ~v~~l~~sp~~~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~~wd~ 102 (340)
.|..++|+ +. .|++. .++.+..++...-........ -...+..+.++| ..++....++.+.++++
T Consensus 88 ~v~~vafs--~d---------~l~v~-~~~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l 152 (381)
T d1xipa_ 88 DVIFVCFH--GD---------QVLVS-TRNALYSLDLEELSEFRTVTS-FEKPVFQLKNVN--NTLVILNSVNDLSALDL 152 (381)
T ss_dssp TEEEEEEE--TT---------EEEEE-ESSEEEEEESSSTTCEEEEEE-CSSCEEEEEECS--SEEEEEETTSEEEEEET
T ss_pred CeEEEEee--CC---------EEEEE-eCCCEEEEEeecccccccccc-ccccccceecCC--ceeEEEecCCCEEEEEe
Confidence 57788886 33 34444 345677787665433333222 345688888876 45667788899999999
Q ss_pred CCCeEEEEee-----cCCCCeeEEEEccCCCEEEEecCcE-EEE-ECCCCceeEEeecCCCCeEEEEECCCCCEEEEE
Q 036605 103 EMGEVIREFK-----ASEKPISSSAFLCEEKIFALASSEV-RIL-SLENGEEVLKFSDDVGPLQYVSASDGAKIIITA 173 (340)
Q Consensus 103 ~~~~~~~~~~-----~~~~~i~~l~~~~~~~~l~~~~~~i-~i~-d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 173 (340)
..+....... .-...+.+++|++.|..+++++++. .+. ++.....+.........+.++.|-.+..++++-
T Consensus 153 ~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 153 RTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp TTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 8876433211 1235678888998888887766652 211 111111111111233457788887666565554
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=80.87 E-value=13 Score=30.39 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=38.7
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCeEEEEee--------cCCCCeeEEEEccC
Q 036605 74 GGLAGLAFAKKGRSLHVVGTNGMASEMKSEMGEVIREFK--------ASEKPISSSAFLCE 126 (340)
Q Consensus 74 ~~v~~v~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--------~~~~~i~~l~~~~~ 126 (340)
...++|+|.|+++.|++--..|.|++++..++....... ..+.....|+++|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 467899999999888775457999999988776543221 12346678999985
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.85 E-value=9.1 Score=28.57 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=45.4
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEeecCC-CCeeEEEEccCCCEEEEecC-------cEEEEECCCCceeEE
Q 036605 84 KGRSLHVVGTN-----GMASEMKSEMGEVIREFKASE-KPISSSAFLCEEKIFALASS-------EVRILSLENGEEVLK 150 (340)
Q Consensus 84 ~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~~~-------~i~i~d~~~~~~~~~ 150 (340)
++..++.|+.+ ..+..||..+.+....-.... ....+.... .+.+++.++. ....+|..+.+...
T Consensus 148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~- 225 (288)
T d1zgka1 148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTF- 225 (288)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEE-
T ss_pred eecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeec-
Confidence 34455555443 457888887765432211111 111222222 3444444322 27888887764332
Q ss_pred eecCCC-Ce-EEEEECCCCCEEEEEEcCC----CeEEEEEc
Q 036605 151 FSDDVG-PL-QYVSASDGAKIIITAGYGE----KHLQVWRC 185 (340)
Q Consensus 151 ~~~~~~-~v-~~~~~s~~~~~l~s~~~~d----~~i~iwd~ 185 (340)
+..... .. ..++.. +++.++.++... ..+.+||+
T Consensus 226 ~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~ 265 (288)
T d1zgka1 226 VAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDP 265 (288)
T ss_dssp CCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEET
T ss_pred ccCccCcccceEEEEE-CCEEEEEecCCCCeecceEEEEEC
Confidence 211111 11 122322 566667665421 23677887
|