Citrus Sinensis ID: 036617

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MEHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCSQMGEI
Secondary Structure (PSIPRED)
ccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccHHHHHHccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHcccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mehtlipaldalnrKDVEGVINLLRRALQVLLARAVNIVILAsndtldllppddpllnkcidpmdALVCSQMGEI
Flexible Loop (DISEMBL)
mehtlipaldalnrkdVEGVINLLRRALQVLLARAVNIVILAsndtldllpPDDPLLNKCIDPMDALVCSQMGEI
Low Complexity Region (SEG)
MEHTLIPALDALNRKDVEGVINllrralqvllaravNIVILASNDTldllppddpllNKCIDPMDALVCSQMGEI
Disordered region (IsUnstruct)
*****IPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVC******
Disordered Region (DISOPRED)
**HTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCSQMGEI
Disordered Region (DISEMBL)
MEHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCSQMGEI
Disordered Region (DISPRO)
*EHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCSQMGE*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCSQMGEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
147819141	330	hypothetical protein VITISV_015733 [Viti	0.933	0.212	0.757	6e-21
255553111	330	racemase and epimerase, acting on amino	0.906	0.206	0.779	8e-21
297743412	443	unnamed protein product [Vitis vinifera]	0.96	0.162	0.722	1e-20
225442873	305	PREDICTED: uncharacterized protein LOC10	0.96	0.236	0.722	1e-20
449469004	327	PREDICTED: uncharacterized protein LOC10	0.96	0.220	0.722	3e-20
388520181	84	unknown [Lotus japonicus]	0.933	0.833	0.728	5e-20
87162592	321	Asp/Glu racemase [Medicago truncatula]	1.0	0.233	0.68	8e-20
357455147	318	Aspartate racemase [Medicago truncatula]	1.0	0.235	0.68	8e-20
224070839	330	predicted protein [Populus trichocarpa]	0.96	0.218	0.694	7e-19
359484398	324	PREDICTED: uncharacterized protein LOC10	0.973	0.225	0.630	1e-18

>gi|147819141|emb|CAN68957.1| hypothetical protein VITISV_015733 [Vitis vinifera]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 59/70 (84%)

Query: 1   MEHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKC 60
           MEHT+IPA++ALNRKD+EG  NLLR ALQVLL RAVN VILAS+D  DLLP DDPLL KC
Sbjct: 249 MEHTVIPAIEALNRKDMEGARNLLRIALQVLLVRAVNTVILASDDMHDLLPRDDPLLKKC 308

Query: 61  IDPMDALVCS 70
           +DPMDAL  S
Sbjct: 309 VDPMDALARS 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553111|ref|XP_002517598.1| racemase and epimerase, acting on amino acids and derivatives, putative [Ricinus communis] gi|223543230|gb|EEF44762.1| racemase and epimerase, acting on amino acids and derivatives, putative [Ricinus communis]

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/68 (77%), Positives = 58/68 (85%)

Query: 1   MEHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKC 60
           MEHT+IPA+ ALNRKD+EG  NLLR ALQVLL RAVN VILAS+D  DLLP +DPLL KC
Sbjct: 249 MEHTIIPAIGALNRKDMEGARNLLRIALQVLLVRAVNTVILASDDMRDLLPQNDPLLKKC 308

Query: 61  IDPMDALV 68
           IDPMDALV
Sbjct: 309 IDPMDALV 316

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743412|emb|CBI36279.3| unnamed protein product [Vitis vinifera]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 59/72 (81%)

Query: 1   MEHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKC 60
           MEHT+IPA++A NRKD+EG  NLLR ALQVLL RAVN VILAS+D  DLLP DDPLL KC
Sbjct: 360 MEHTVIPAIEAFNRKDMEGARNLLRIALQVLLVRAVNTVILASDDMHDLLPRDDPLLKKC 419

Query: 61  IDPMDALVCSQM 72
           +DPMDAL  S +
Sbjct: 420 VDPMDALARSTI 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442873|ref|XP_002281753.1| PREDICTED: uncharacterized protein LOC100249822 [Vitis vinifera]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 59/72 (81%)

Query: 1   MEHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKC 60
           MEHT+IPA++A NRKD+EG  NLLR ALQVLL RAVN VILAS+D  DLLP DDPLL KC
Sbjct: 222 MEHTVIPAIEAFNRKDMEGARNLLRIALQVLLVRAVNTVILASDDMHDLLPRDDPLLKKC 281

Query: 61  IDPMDALVCSQM 72
           +DPMDAL  S +
Sbjct: 282 VDPMDALARSTI 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469004|ref|XP_004152211.1| PREDICTED: uncharacterized protein LOC101217164 [Cucumis sativus] gi|449532820|ref|XP_004173376.1| PREDICTED: uncharacterized protein LOC101225587 [Cucumis sativus]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 60/72 (83%)

Query: 1   MEHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKC 60
           MEHT+IPA++ALNRKD+EG  NLLR ALQVLL RAVN VILAS+D  D+LP DDPLL +C
Sbjct: 249 MEHTVIPAIEALNRKDIEGARNLLRIALQVLLVRAVNSVILASDDIKDILPLDDPLLRRC 308

Query: 61  IDPMDALVCSQM 72
           IDPMDAL  S +
Sbjct: 309 IDPMDALARSTI 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520181|gb|AFK48152.1| unknown [Lotus japonicus]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 58/70 (82%)

Query: 1  MEHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKC 60
          MEHT++PA++AL+RKD+EG  NL R ALQVLL RAVN VILAS+D  DLLP DDPLL KC
Sbjct: 1  MEHTVMPAIEALDRKDMEGACNLFRIALQVLLVRAVNSVILASDDMRDLLPKDDPLLKKC 60

Query: 61 IDPMDALVCS 70
          IDPMDAL  S
Sbjct: 61 IDPMDALAWS 70

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87162592|gb|ABD28387.1| Asp/Glu racemase [Medicago truncatula]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 60/75 (80%)

Query: 1   MEHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKC 60
           MEHT+IPA +AL+RKD+EG  NLLR ALQVLL RAVN VILAS++  D+LP DDPLL KC
Sbjct: 240 MEHTVIPATEALSRKDMEGACNLLRIALQVLLVRAVNFVILASDEMRDVLPHDDPLLKKC 299

Query: 61  IDPMDALVCSQMGEI 75
           IDPMDAL  S +  +
Sbjct: 300 IDPMDALARSTIKWV 314

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455147|ref|XP_003597854.1| Aspartate racemase [Medicago truncatula] gi|355486902|gb|AES68105.1| Aspartate racemase [Medicago truncatula]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 60/75 (80%)

Query: 1   MEHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKC 60
           MEHT+IPA +AL+RKD+EG  NLLR ALQVLL RAVN VILAS++  D+LP DDPLL KC
Sbjct: 237 MEHTVIPATEALSRKDMEGACNLLRIALQVLLVRAVNFVILASDEMRDVLPHDDPLLKKC 296

Query: 61  IDPMDALVCSQMGEI 75
           IDPMDAL  S +  +
Sbjct: 297 IDPMDALARSTIKWV 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070839|ref|XP_002303258.1| predicted protein [Populus trichocarpa] gi|222840690|gb|EEE78237.1| predicted protein [Populus trichocarpa]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 58/72 (80%)

Query: 1   MEHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKC 60
           MEHT+IPA++AL+R D+EG  NLLR ALQVLL RAVN VILAS +  D+LP DDPLL KC
Sbjct: 249 MEHTIIPAIEALDRNDMEGAQNLLRIALQVLLVRAVNTVILASEEMRDVLPEDDPLLKKC 308

Query: 61  IDPMDALVCSQM 72
           IDPMDAL  S +
Sbjct: 309 IDPMDALARSTI 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484398|ref|XP_003633103.1| PREDICTED: uncharacterized protein LOC100853647 [Vitis vinifera] gi|147821411|emb|CAN63506.1| hypothetical protein VITISV_011681 [Vitis vinifera]

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/73 (63%), Positives = 58/73 (79%)

Query: 1   MEHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKC 60
           MEH ++PA++AL+RKD+EG  NLLR A+ + L RAVNIVILAS++  DLLP DDPL  KC
Sbjct: 240 MEHIVVPAIEALHRKDMEGARNLLRIAVHIFLMRAVNIVILASDEMQDLLPRDDPLSKKC 299

Query: 61  IDPMDALVCSQMG 73
           I+PMDAL  S +G
Sbjct: 300 INPMDALARSTIG 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
TAIR|locus:2037743	330	AT1G15410 [Arabidopsis thalian	0.933	0.212	0.371	1.6e-07

TAIR|locus:2037743 AT1G15410 [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 26/70 (37%), Positives = 37/70 (52%)

Query:     1 MEHTLIPALDALNRKDVEGVINXXXXXXXXXXXXXXNIVILASNDTXXXXXXXXXXXNKC 60
             MEHT+IP+++A+ RKD+EG  N              N+V+L S++             KC
Sbjct:   251 MEHTVIPSIEAMKRKDMEGARNLLRIALQVLLVQAVNVVMLGSDEMRDLLPGDDPLLKKC 310

Query:    61 IDPMDALVCS 70
             +DPMDAL  S
Sbjct:   311 VDPMDALARS 320


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       75        50   0.00091  102 3  11 22  0.38    27
                                                     29  0.41    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  401 (43 KB)
  Total size of DFA:  68 KB (2061 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  3.51u 0.18s 3.69t   Elapsed:  00:00:01
  Total cpu time:  3.51u 0.18s 3.69t   Elapsed:  00:00:01
  Start:  Mon May 20 17:34:16 2013   End:  Mon May 20 17:34:17 2013

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016855 "racemase and epimerase activity, acting on amino acids and derivatives" evidence=IEA;ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
PRK10200	230	putative racemase; Provisional	99.58
COG1794	230	RacX Aspartate racemase [Cell envelope biogenesis,	99.56
TIGR00035	229	asp_race aspartate racemase.	99.56
TIGR00067	251	glut_race glutamate racemase. The most closely rel	99.19
PRK00865	261	glutamate racemase; Provisional	98.83
PRK07475	245	hypothetical protein; Provisional	98.67
PF01177	216	Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro	98.28
COG0796	269	MurI Glutamate racemase [Cell envelope biogenesis,	95.66
TIGR00035	229	asp_race aspartate racemase.	91.41
cd00215	97	PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobios	90.18
PRK10200	230	putative racemase; Provisional	90.09
TIGR00823	99	EIIA-LAC phosphotransferase system enzyme II, lact	90.0
PRK09591	104	celC cellobiose phosphotransferase system IIA comp	89.22
COG4126	230	Hydantoin racemase [Amino acid transport and metab	88.92
PF02255	96	PTS_IIA: PTS system, Lactose/Cellobiose specific I	88.83
PRK10481	224	hypothetical protein; Provisional	88.29
PRK10454	115	PTS system N,N'-diacetylchitobiose-specific transp	88.14
COG1794	230	RacX Aspartate racemase [Cell envelope biogenesis,	86.59
PRK10481	224	hypothetical protein; Provisional	85.83
COG1447	105	CelC Phosphotransferase system cellobiose-specific	80.08

>PRK10200 putative racemase; Provisional

Probab=99.58  E-value=4.5e-15  Score=106.62  Aligned_cols=69  Identities=13%  Similarity=0.084  Sum_probs=61.1

Q ss_pred             hhhHHHH-HhhcCCh-HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHHHHHhc
Q 036617            4 TLIPALD-ALNRKDV-EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVCSQMGE   74 (75)
Q Consensus         4 ~vm~aIy-avKag~~-~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLara~i~~   74 (75)
                      .||..|| .+|+|++ +..++.+...++.|..+|+|.+||||||+|++++. +.++  .+|||++.||+++++.
T Consensus       156 ~v~~~i~~~l~~G~~~~~~~~~l~~~l~~l~~~g~d~vILGCTelpll~~~~~~~~--~~iD~~~~la~~~v~~  227 (230)
T PRK10200        156 KINQIIFEELCLGQFTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEERSVL--PVFDTAAIHAEDAVAF  227 (230)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCCEEEECCcCHHHhCCcccCCC--CeEchHHHHHHHHHHH
Confidence            4999999 5999997 67789999999999999999999999999999987 4333  5899999999999864

>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]

Probab=99.56  E-value=7.8e-15  Score=108.02  Aligned_cols=69  Identities=17%  Similarity=0.106  Sum_probs=64.3

Q ss_pred             hhhHHHHH-hhcCChH-HHHHHHHHHHHHHHHhhhceeeeeccCcccCCCCCCCcccccCchHHHHHHHHHh
Q 036617            4 TLIPALDA-LNRKDVE-GVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCSQMG   73 (75)
Q Consensus         4 ~vm~aIya-vKag~~~-~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~~~~~~~~~iD~tdaLara~i~   73 (75)
                      .||+-||. +|+|++. ..+.++..++..|.+||++.|||||||||+.|.+ ..++..++|||..+|+++|+
T Consensus       155 ~v~~iIy~El~~G~~~~~sr~~~~~ii~~l~~~Gae~vIlGCTEi~lll~~-~d~~vP~~Dtt~iha~aav~  225 (230)
T COG1794         155 EVNRIIYEELCQGIVKDASRELYLAVIERLAERGAEGVILGCTEIPLLLSQ-DDSSVPVFDTTAIHAEAAVE  225 (230)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHcCCCEEEEeccchheeecC-CcccCcccccHHHHHHHHHH
Confidence            39999999 9999987 7999999999999999999999999999999999 33778899999999999985

>TIGR00035 asp_race aspartate racemase

Probab=99.56  E-value=1e-14  Score=103.50  Aligned_cols=70  Identities=21%  Similarity=0.259  Sum_probs=62.9

Q ss_pred             hhhHHHH-HhhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCCCCCcccccCchHHHHHHHHHhc
Q 036617            4 TLIPALD-ALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCSQMGE   74 (75)
Q Consensus         4 ~vm~aIy-avKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~~~~~~~~~iD~tdaLara~i~~   74 (75)
                      .|+.+|| .+|+|+.+.+.+.++..++.|..+|+|.+||||||+|++++. ...+..+|||++.+|+++++.
T Consensus       155 ~i~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~gad~iILgCTelpll~~~-~~~~~pviD~~~~~a~~~v~~  225 (229)
T TIGR00035       155 AIMSGIYDEVKAGNIELGRELLLKIAKELEERGAEGIILGCTELSLILKA-DDLDVPLIDPMDVIAEAAVKL  225 (229)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEEeCcchHhhccc-ccCCCCeEchHHHHHHHHHHH
Confidence            3888999 499999999999999999999999999999999999999985 334678999999999999863

>TIGR00067 glut_race glutamate racemase

Probab=99.19  E-value=1.6e-11  Score=89.35  Aligned_cols=69  Identities=13%  Similarity=0.011  Sum_probs=59.5

Q ss_pred             hhHHHHHhhcCCh--HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCC--cccccCchHHHHHHHHHh
Q 036617            5 LIPALDALNRKDV--EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDP--LLNKCIDPMDALVCSQMG   73 (75)
Q Consensus         5 vm~aIyavKag~~--~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~--~~~~~iD~tdaLara~i~   73 (75)
                      ++.-++.+|+|+.  +.+.+.+...++.|..+|+|.+||||||+|++.+. .+-  .+-.+|||++++||++++
T Consensus       140 ~~~lv~~Ie~g~~~~~~~~~~l~~~l~~l~~~~~d~lILGCTh~P~l~~~i~~~~~~~v~~IDp~~~la~~~~~  213 (251)
T TIGR00067       140 CPELVPLAEAGLLGEDYALECLKRYLRPLLDTLPDTVVLGCTHFPLLKEEIEQYLPEHVRLVDSGVHTARRTAW  213 (251)
T ss_pred             CHHHHHHHHcCCcCCHHHHHHHHHHHHHHhcCCCCEEEECcCChHHHHHHHHHHcCCCcEEECCHHHHHHHHHH
Confidence            5666889999998  66999999999999999999999999999999976 332  334799999999999875

The most closely related proteins differing in function are aspartate racemases.

>PRK00865 glutamate racemase; Provisional

Probab=98.83  E-value=1.4e-09  Score=79.06  Aligned_cols=62  Identities=19%  Similarity=0.153  Sum_probs=51.9

Q ss_pred             hhcCC--hHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CC--CcccccCchHHHHHHHHHh
Q 036617           12 LNRKD--VEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DD--PLLNKCIDPMDALVCSQMG   73 (75)
Q Consensus        12 vKag~--~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~--~~~~~~iD~tdaLara~i~   73 (75)
                      +++|.  .+.+.+.+...++.|..+|+|.|||||||+|++.+. ..  +..-..|||++++||.++.
T Consensus       152 ie~g~~~~~~~~~~l~~~l~~l~~~g~d~iILGCTh~p~l~~~i~~~~~~~v~vIDp~~~~a~~~~~  218 (261)
T PRK00865        152 VEAGILGGPVTLEVLREYLAPLLAAGIDTLVLGCTHYPLLKPEIQQVLGEGVTLIDSGEAIARRVAR  218 (261)
T ss_pred             HhCCCcCCHHHHHHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHHHcCCCCEEECCHHHHHHHHHH
Confidence            66664  467889999999999989999999999999998876 33  2235899999999999865

>PRK07475 hypothetical protein; Provisional

Probab=98.67  E-value=1.5e-08  Score=73.53  Aligned_cols=66  Identities=12%  Similarity=0.084  Sum_probs=56.2

Q ss_pred             hhhHHHHH-hhcCChHHHHHHHHHHHHHHHHh--hhceeeeeccCcccCCCC-CCCcccccCchHHHHHH
Q 036617            4 TLIPALDA-LNRKDVEGVINLLRRALQVLLAR--AVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVC   69 (75)
Q Consensus         4 ~vm~aIya-vKag~~~~a~~ll~~~~~~L~~r--g~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLar   69 (75)
                      .||..||. .|.+|.+++.+.+..+++.|.++  |++.|||+|||+|.+.+. ........+|++.++..
T Consensus       162 ~~~~~I~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~daIvL~CTeLp~~~~~le~~~glPViDs~t~~~w  231 (245)
T PRK07475        162 EFRRNILENRGELDNEAAEQEVVAAARALLERHPDIGAIVLECTNMPPYAAAIQRATGLPVFDIVTLINW  231 (245)
T ss_pred             HHHHHHhcccccccHHHHHHHHHHHHHHHHhhCCCCCEEEEcCcChHHHHHHHHHhcCCCEEeHHHHHHH
Confidence            38889984 78889999999999999999854  999999999999998866 44467789999988764

>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase

Probab=98.28  E-value=1.7e-07  Score=63.96  Aligned_cols=68  Identities=21%  Similarity=0.231  Sum_probs=51.4

Q ss_pred             hhHHHHHhh-cCChHHH-HHHHHHHHHHHH-HhhhceeeeeccCcccCCCC----CCCcccccCchHHHHHHHHH
Q 036617            5 LIPALDALN-RKDVEGV-INLLRRALQVLL-ARAVNIVILASNDTLDLLPP----DDPLLNKCIDPMDALVCSQM   72 (75)
Q Consensus         5 vm~aIyavK-ag~~~~a-~~ll~~~~~~L~-~rg~~~vILaCTEiPl~L~~----~~~~~~~~iD~tdaLara~i   72 (75)
                      ++.+||.++ .|+.... ...+...++.|. ..|+|.||||||++|.+++.    ........|||.++++++++
T Consensus       142 i~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~~~~~l~~~~gipVid~~~~~~~~~l  216 (216)
T PF01177_consen  142 IHNAIYDVIELGDIPPEQIEILAEAARELIKEDGADAIILGCTHLPLLLGAIEALEEELGIPVIDSNQAAAWAAL  216 (216)
T ss_dssp             EEEEHTHHHHTTCTTHHHHHHHHHHHHHHHHCTTSSEEEEESTTGGGGHHHHHHHHHTCSSEEEEHHHHHHHHHH
T ss_pred             HHhhcHHHHhhhcCCHHHHHHHHHHHHHHhccCCCCEEEECCCchHHHHHHHHhhcccCCCEEEccHHHHHHHhC
Confidence            345565533 7777665 677777777775 88999999999999977533    33446789999999999874

Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....

>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]

Probab=95.66  E-value=0.0057  Score=46.24  Aligned_cols=56  Identities=14%  Similarity=0.071  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCC--cccccCchHHHHHHHHHh
Q 036617           18 EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDP--LLNKCIDPMDALVCSQMG   73 (75)
Q Consensus        18 ~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~--~~~~~iD~tdaLara~i~   73 (75)
                      +.+.+.++..+.-+...|.|.+|||||=-|++=+. .+-  .....|||-.+-||...+
T Consensus       160 ~~~~~~l~~~l~~~~~~~~DtlVLGCTHyPll~~~i~~~~~~~v~lids~~~~a~~~~~  218 (269)
T COG0796         160 PVALEVLKEYLPPLQEAGPDTLVLGCTHYPLLKPEIQQVLGEHVALIDSGAETARRLAR  218 (269)
T ss_pred             HHHHHHHHHHhcchhccCCCEEEEeCcCcHHHHHHHHHHhCCCceEeCCHHHHHHHHHH
Confidence            34667778888888888999999999999987665 333  347899999999988765

>TIGR00035 asp_race aspartate racemase

Probab=91.41  E-value=0.27  Score=34.87  Aligned_cols=60  Identities=8%  Similarity=0.058  Sum_probs=45.9

Q ss_pred             hhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHHHH
Q 036617           12 LNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVCSQ   71 (75)
Q Consensus        12 vKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLara~   71 (75)
                      +.+|+-+.-.+.+...++.|...|++.++++|.=...+++. ....+..+|...++.+++.
T Consensus        52 ~~~~~~~~~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iPii~i~~~~~~~~  112 (229)
T TIGR00035        52 ILGRGEDRPRPILIDIAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMIEETAEAV  112 (229)
T ss_pred             HhcCCcchHHHHHHHHHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCCEechHHHHHHHH
Confidence            45577788899999999999999999999999876666655 4444566777666665543

>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit

Probab=90.18  E-value=0.66  Score=30.02  Aligned_cols=29  Identities=28%  Similarity=0.240  Sum_probs=25.8

Q ss_pred             hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617            5 LIPALDALNRKDVEGVINLLRRALQVLLA   33 (75)
Q Consensus         5 vm~aIyavKag~~~~a~~ll~~~~~~L~~   33 (75)
                      +|.|+.+.|.||+++|.++|...-+.|..
T Consensus        19 ~~eAl~~a~~g~fe~A~~~l~ea~~~l~~   47 (97)
T cd00215          19 ALEALKAAKEGDFAEAEELLEEANDSLNE   47 (97)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999988776653

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.

>PRK10200 putative racemase; Provisional

Probab=90.09  E-value=0.61  Score=33.55  Aligned_cols=60  Identities=12%  Similarity=0.121  Sum_probs=44.6

Q ss_pred             hHHHHH-hhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHH
Q 036617            6 IPALDA-LNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMD   65 (75)
Q Consensus         6 m~aIya-vKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~td   65 (75)
                      +|-..+ +.+|+-+...+.|.+.++.|...||+.++++|.=.--+++. .+..+..+|+=.+
T Consensus        45 ~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iPii~ii~  106 (230)
T PRK10200         45 FHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIAD  106 (230)
T ss_pred             hHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCCEeehHH
Confidence            444444 67788899999999999999999999999999866666554 3334445555444

>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III

Probab=90.00  E-value=0.69  Score=30.03  Aligned_cols=29  Identities=24%  Similarity=0.176  Sum_probs=25.6

Q ss_pred             hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617            5 LIPALDALNRKDVEGVINLLRRALQVLLA   33 (75)
Q Consensus         5 vm~aIyavKag~~~~a~~ll~~~~~~L~~   33 (75)
                      +|.|+.+.|.||+++|.++|...-+.|..
T Consensus        21 ~~eAl~~a~~gdfe~A~~~l~eA~~~l~~   49 (99)
T TIGR00823        21 ALEALKAAKAGDFAKARALVEQAGMCLNE   49 (99)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999988776643

operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.

>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed

Probab=89.22  E-value=0.85  Score=29.90  Aligned_cols=29  Identities=17%  Similarity=0.189  Sum_probs=25.5

Q ss_pred             hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617            5 LIPALDALNRKDVEGVINLLRRALQVLLA   33 (75)
Q Consensus         5 vm~aIyavKag~~~~a~~ll~~~~~~L~~   33 (75)
                      ++.|+.+.|.||+++|.++|...-+.|..
T Consensus        24 ~~eAl~~ak~gdf~~A~~~l~eA~~~l~~   52 (104)
T PRK09591         24 VHEAFAAMREGNFDLAEQKLNQSNEELLE   52 (104)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999988776543

>COG4126 Hydantoin racemase [Amino acid transport and metabolism]

Probab=88.92  E-value=0.38  Score=36.02  Aligned_cols=57  Identities=21%  Similarity=0.123  Sum_probs=42.9

Q ss_pred             CChHHHHHHHHHHHH-HHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHHHH
Q 036617           15 KDVEGVINLLRRALQ-VLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVCSQ   71 (75)
Q Consensus        15 g~~~~a~~ll~~~~~-~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLara~   71 (75)
                      |+-++++.++..-++ .+..-|+|+|||||+=+--+-+. ...+.-..||++-+.++-.
T Consensus       153 ~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~gvPVIDgv~Aav~~a  211 (230)
T COG4126         153 GPPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDLADQLQKAFGVPVIDGVAAAVKLA  211 (230)
T ss_pred             CChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHHHHHHHHHHHhCCCcccchHHHHHHH
Confidence            356777777665554 55566999999999988777555 6777788899998887654

>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=88.83  E-value=0.99  Score=29.03  Aligned_cols=29  Identities=34%  Similarity=0.361  Sum_probs=25.0

Q ss_pred             hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617            5 LIPALDALNRKDVEGVINLLRRALQVLLA   33 (75)
Q Consensus         5 vm~aIyavKag~~~~a~~ll~~~~~~L~~   33 (75)
                      +|.|+.+.|.||+++|.+++...-+.|..
T Consensus        18 ~~eAl~~a~~~~fe~A~~~l~~a~~~l~~   46 (96)
T PF02255_consen   18 AMEALKAAREGDFEEAEELLKEADEELLK   46 (96)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999988777654

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.

>PRK10481 hypothetical protein; Provisional

Probab=88.29  E-value=0.69  Score=33.98  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhceeeeeccCc-ccCCC
Q 036617           18 EGVINLLRRALQVLLARAVNIVILASNDT-LDLLP   51 (75)
Q Consensus        18 ~~a~~ll~~~~~~L~~rg~~~vILaCTEi-Pl~L~   51 (75)
                      +.-.+.++.+++.|.+.|++.++|+||-- |-.-.
T Consensus        73 ~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a  107 (224)
T PRK10481         73 QKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTA  107 (224)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccc
Confidence            34567899999999999999999999976 76333

>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional

Probab=88.14  E-value=1.1  Score=30.09  Aligned_cols=29  Identities=14%  Similarity=0.162  Sum_probs=25.6

Q ss_pred             hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617            5 LIPALDALNRKDVEGVINLLRRALQVLLA   33 (75)
Q Consensus         5 vm~aIyavKag~~~~a~~ll~~~~~~L~~   33 (75)
                      +|.|+.+.|.||+++|.+++...-+.|..
T Consensus        35 ~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~   63 (115)
T PRK10454         35 AYAALKQAKQGDFAAAKAMMDQSRMALNE   63 (115)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999988776643

>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]

Probab=86.59  E-value=0.54  Score=35.13  Aligned_cols=60  Identities=12%  Similarity=0.094  Sum_probs=43.6

Q ss_pred             HHhhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHH
Q 036617           10 DALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVC   69 (75)
Q Consensus        10 yavKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLar   69 (75)
                      ++-++|+.+++.+.|...+..|.+-|+|.+++.|.=+-..-.+ .....-.+|+-.|+=++
T Consensus        50 ~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~  110 (230)
T COG1794          50 TLQRAGEWDEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAK  110 (230)
T ss_pred             HHHccCccccHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHH
Confidence            5689999999999999999999999999999999755444433 33333334444444333

>PRK10481 hypothetical protein; Provisional

Probab=85.83  E-value=0.47  Score=34.86  Aligned_cols=51  Identities=12%  Similarity=-0.014  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHhhhceeeeeccCcccCCC-C-CCCcccccCchHHHHHHHHH
Q 036617           22 NLLRRALQVLLARAVNIVILASNDTLDLLP-P-DDPLLNKCIDPMDALVCSQM   72 (75)
Q Consensus        22 ~ll~~~~~~L~~rg~~~vILaCTEiPl~L~-~-~~~~~~~~iD~tdaLara~i   72 (75)
                      .-+..+.+.|...|+|.|+++||=+.-... . ...+....|||-.+.||-+-
T Consensus       169 ~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~ar~~~  221 (224)
T PRK10481        169 EELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLVARLAA  221 (224)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHHHHHHH
Confidence            356778899999999999999998885333 2 66778889999999997653

>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]

Probab=80.08  E-value=4.1  Score=27.18  Aligned_cols=29  Identities=28%  Similarity=0.252  Sum_probs=25.4

Q ss_pred             hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617            5 LIPALDALNRKDVEGVINLLRRALQVLLA   33 (75)
Q Consensus         5 vm~aIyavKag~~~~a~~ll~~~~~~L~~   33 (75)
                      ++.|+.+.|.|++++|..++...-+.|..
T Consensus        23 ~~eAl~~Ak~g~f~~A~~~i~eA~~~l~e   51 (105)
T COG1447          23 AYEALKAAKEGDFEEAEELIQEANDALNE   51 (105)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999988776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
3s81_A	268	Putative aspartate racemase; structural genomics,	1e-04
1jfl_A	228	Aspartate racemase; alpha-beta structure, HOMO-dim	6e-04

>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A Length = 268

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 3   HTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDD-PLLNKCI 61
             ++ A+  L R D      LL   +  L+AR    +I+   +   ++   +  +    I
Sbjct: 177 ALVMQAIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMI 236

Query: 62  DPMDALV 68
           D   +LV
Sbjct: 237 DSTASLV 243

>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A Length = 228

 Score = 35.4 bits (81), Expect = 6e-04
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 1   MEHTLIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKC 60
            +  +    + +   +++    LL +  ++L  R    +I    + + ++   D L    
Sbjct: 152 QKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTE-VSVVLKQDDLKVPL 210

Query: 61  IDPMDALV 68
           IDPMD + 
Sbjct: 211 IDPMDVIA 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
3ojc_A	231	Putative aspartate/glutamate racemase; structural	99.49
3s81_A	268	Putative aspartate racemase; structural genomics,	99.47
1jfl_A	228	Aspartate racemase; alpha-beta structure, HOMO-dim	99.37
2zsk_A	226	PH1733, 226AA long hypothetical aspartate racemase	99.34
3out_A	268	Glutamate racemase; structural genomics, center fo	98.96
2gzm_A	267	Glutamate racemase; enzyme, isomerase; HET: DGL; 1	98.92
1zuw_A	272	Glutamate racemase 1; (R)-glutamate, peptidoglycan	98.9
2jfq_A	286	Glutamate racemase; cell WALL, isomerase, cell sha	98.9
3ist_A	269	Glutamate racemase; structural genomics, cell WALL	98.9
2jfn_A	285	Glutamate racemase; cell WALL, isomerase, cell sha	98.85
2vvt_A	290	Glutamate racemase; isomerase, peptidoglycan synth	98.83
2dwu_A	276	Glutamate racemase; isomerase; HET: DGL; 1.60A {Ba	98.77
1b73_A	254	Glutamate racemase; isomerase; 2.30A {Aquifex pyro	98.68
3uhf_A	274	Glutamate racemase; structural genomics, center fo	98.66
2oho_A	273	Glutamate racemase; isomerase; 2.25A {Streptococcu	98.61
2jfz_A	255	Glutamate racemase; cell WALL, isomerase, cell sha	98.58
2eq5_A	228	228AA long hypothetical hydantoin racemase; struct	98.42
2dgd_A	223	223AA long hypothetical arylmalonate decarboxylas;	98.39
3ixl_A	240	Amdase, arylmalonate decarboxylase; enantioselecti	98.17
3qvl_A	245	Putative hydantoin racemase; isomerase; HET: 5HY;	98.0
2xed_A	273	Putative maleate isomerase; nicotinic acid catabol	97.96
3ojc_A	231	Putative aspartate/glutamate racemase; structural	94.16
2zsk_A	226	PH1733, 226AA long hypothetical aspartate racemase	92.81
1wcr_A	103	PTS system, N, N'-diacetylchitobiose-specific IIA	90.81
2e2a_A	105	Protein (enzyme IIA); helical bundles, PTS, transf	90.65
3k1s_A	109	PTS system, cellobiose-specific IIA component; all	89.66
3l8r_A	120	PTCA, putative PTS system, cellobiose-specific IIA	89.16
3out_A	268	Glutamate racemase; structural genomics, center fo	85.01
1jfl_A	228	Aspartate racemase; alpha-beta structure, HOMO-dim	84.73
2eq5_A	228	228AA long hypothetical hydantoin racemase; struct	84.6
2gzm_A	267	Glutamate racemase; enzyme, isomerase; HET: DGL; 1	82.33
3uhf_A	274	Glutamate racemase; structural genomics, center fo	81.44
2jfz_A	255	Glutamate racemase; cell WALL, isomerase, cell sha	81.38
1b73_A	254	Glutamate racemase; isomerase; 2.30A {Aquifex pyro	80.59

>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}

Probab=99.49  E-value=4.7e-14  Score=99.60  Aligned_cols=70  Identities=14%  Similarity=0.097  Sum_probs=61.8

Q ss_pred             hhhHHHHH-hhcCCh-HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCCCCCcccccCchHHHHHHHHHhc
Q 036617            4 TLIPALDA-LNRKDV-EGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCSQMGE   74 (75)
Q Consensus         4 ~vm~aIya-vKag~~-~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~~~~~~~~~iD~tdaLara~i~~   74 (75)
                      .|+..||. +|+|++ +..++.+...++.|..+|+|.+||||||+|++.+.. ..+..+|||++++|+++++.
T Consensus       157 ~v~~~I~~~~~~g~~~~~~~~~~~~~~~~l~~~g~d~vILGCTe~pll~~~~-~~~v~viDs~~~~A~~~v~~  228 (231)
T 3ojc_A          157 AVNRIIYEELCLGIISETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQ-DASVPVFDTTAIHASAAADY  228 (231)
T ss_dssp             HHHHHHHHTGGGTCCCHHHHHHHHHHHHHHHHTTCSCEEECSGGGGGTCCGG-GCSSCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHhcccc-cCCCcEEchHHHHHHHHHHH
Confidence            37889997 999998 677899999999999999999999999999999882 24578999999999999863

>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A

Probab=99.47  E-value=3.3e-14  Score=103.02  Aligned_cols=70  Identities=20%  Similarity=0.298  Sum_probs=64.3

Q ss_pred             hhHHHHHhhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHHHHHhc
Q 036617            5 LIPALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVCSQMGE   74 (75)
Q Consensus         5 vm~aIyavKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLara~i~~   74 (75)
                      |++.||.+++|+++.+++.++..++.|..+|+|.|||||||+|++.+. ..+.+..+|||++++||++++.
T Consensus       179 v~~~I~~ve~g~~~~~~~~l~~~l~~l~~~g~d~vILGCTh~pll~~~l~~~~~v~viDs~~~~A~~~~~~  249 (268)
T 3s81_A          179 VMQAIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASLVRAAIRW  249 (268)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSEEEECSTTHHHHHTTTGGGSSSCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchhHHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHhcCCCCeEEccHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999999999988 5566788999999999998863

>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A

Probab=99.37  E-value=4.4e-13  Score=92.87  Aligned_cols=68  Identities=21%  Similarity=0.302  Sum_probs=61.5

Q ss_pred             hhHHHH-HhhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCCCCCcccccCchHHHHHHHHHh
Q 036617            5 LIPALD-ALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCSQMG   73 (75)
Q Consensus         5 vm~aIy-avKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~~~~~~~~~iD~tdaLara~i~   73 (75)
                      +++.|| .+++|+++...+.+...++.|..+|+|.|||||||+|++.+..+ .....|||++++++++++
T Consensus       155 ~~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~g~d~iiLGCT~~p~l~~~~~-~~vpviDs~~~~a~~~~~  223 (228)
T 1jfl_A          155 VMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDD-LKVPLIDPMDVIAEVAVK  223 (228)
T ss_dssp             HHHHHHTTGGGTCHHHHHHHHHHHHHHHHHTTCSEEEECSHHHHHHCCGGG-CSSCEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHHHHCCcCEEEECCCChHhhhhhhc-CCCCEEChHHHHHHHHHH
Confidence            788999 69999998899999999999999999999999999999988722 467899999999999875

>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}

Probab=99.34  E-value=1.3e-12  Score=90.58  Aligned_cols=68  Identities=10%  Similarity=0.076  Sum_probs=60.1

Q ss_pred             hhhHHHHH-hhcCChHHHHHHHHHHHHHHHH-hhhceeeeeccCcccCCCCCCCcccccCchHHHHHHHHHh
Q 036617            4 TLIPALDA-LNRKDVEGVINLLRRALQVLLA-RAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCSQMG   73 (75)
Q Consensus         4 ~vm~aIya-vKag~~~~a~~ll~~~~~~L~~-rg~~~vILaCTEiPl~L~~~~~~~~~~iD~tdaLara~i~   73 (75)
                      .+++.||. +|+|+++ .++.+...++.|.. +|+|.|||||||+|++.+.. ......|||++++|+++++
T Consensus       153 ~v~~~i~~~~~~g~~~-~~~~l~~~~~~l~~~~g~d~iiLGCT~~p~l~~~~-~~~vpviDs~~~~a~~~~~  222 (226)
T 2zsk_A          153 ELNRIIFEELAFGNLK-NKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQG-DVSVEVFDSAEIHMRKLIE  222 (226)
T ss_dssp             HHHHHHHHTGGGTCCT-THHHHHHHHHHHHHHSCCSEEEECSSSGGGTCCGG-GSSSEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCchh-HHHHHHHHHHHHHhhcCCCEEEECCCCHHHHhhcc-CCCCcEEChHHHHHHHHHH
Confidence            37889996 9999998 88999999999998 89999999999999998772 3457899999999999886

>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}

Probab=98.96  E-value=1.1e-10  Score=84.55  Aligned_cols=64  Identities=16%  Similarity=0.049  Sum_probs=55.7

Q ss_pred             HHhhcCCh--HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHHHHHh
Q 036617           10 DALNRKDV--EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVCSQMG   73 (75)
Q Consensus        10 yavKag~~--~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLara~i~   73 (75)
                      ..+++|++  +.++..++..++.|..+|+|.+||||||+|++.+. ..+.....|||++++||++++
T Consensus       151 ~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iILGCTh~pll~~~i~~~~~v~viD~~~~~a~~~~~  217 (268)
T 3out_A          151 SMIEEGFVSGHIVELVAKEYLSYFHDKNIQALILGCTHYPIIKESIAKILDVKLIDPSLQASKMLYS  217 (268)
T ss_dssp             HHHHTTCCSSHHHHHHHHHHHGGGTTSCCSEEEECSTTGGGGHHHHHHHCCSEEECCHHHHHHHHHH
T ss_pred             HHHHcCCcCCHHHHHHHHHHHHHHHhCCCCEEEECCCChHHHHHHHhcCCCCceechHHHHHHHHHH
Confidence            44678886  67899999999999999999999999999999887 345677899999999999875

>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}

Probab=98.92  E-value=3.9e-10  Score=80.51  Aligned_cols=66  Identities=17%  Similarity=0.124  Sum_probs=55.9

Q ss_pred             HHHHhhcCCh--HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CC--CcccccCchHHHHHHHHHh
Q 036617            8 ALDALNRKDV--EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DD--PLLNKCIDPMDALVCSQMG   73 (75)
Q Consensus         8 aIyavKag~~--~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~--~~~~~~iD~tdaLara~i~   73 (75)
                      -++.+++|++  +...+.+...++.|..+|+|.+|||||++|++.+. ..  +.....|||++++|+++++
T Consensus       147 ~v~~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iVLGCTh~p~l~~~i~~~~~~~vpviDs~~~~a~~~~~  217 (267)
T 2gzm_A          147 FVELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCTHYPILGPVIKQVMGDKVQLISSGDETAREVST  217 (267)
T ss_dssp             HHHHHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcccChHHHHHHHHHHcCCCCEEECcHHHHHHHHHH
Confidence            3456888987  67889999999999999999999999999998776 32  3357899999999999875

>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}

Probab=98.90  E-value=4.7e-10  Score=80.53  Aligned_cols=66  Identities=11%  Similarity=0.042  Sum_probs=56.2

Q ss_pred             HHHHhhcCCh--HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CC--CcccccCchHHHHHHHHHh
Q 036617            8 ALDALNRKDV--EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DD--PLLNKCIDPMDALVCSQMG   73 (75)
Q Consensus         8 aIyavKag~~--~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~--~~~~~~iD~tdaLara~i~   73 (75)
                      -.+.+++|++  +...+.+...++.|..+|+|.+|||||++|++.+. ..  +.....|||++++|+++.+
T Consensus       148 ~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~iVLGCTh~pll~~~i~~~~~~~v~vIDs~~~~a~~~~~  218 (272)
T 1zuw_A          148 LVPFVESGKFLDQTADEIVKTSLYPLKDTSIDSLILGCTHYPILKEAIQRYMGEHVNIISSGDETAREVST  218 (272)
T ss_dssp             HHHHHTSCCCCHHHHHHHHHHHHHHHHHSCCSEEEEESTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHH
Confidence            4566889988  67889999999999999999999999999998776 32  3356899999999999875

>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}

Probab=98.90  E-value=2.5e-10  Score=82.58  Aligned_cols=66  Identities=12%  Similarity=0.033  Sum_probs=55.7

Q ss_pred             HHHHhhcCCh--HHH-HHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CC--CcccccCchHHHHHHHHHh
Q 036617            8 ALDALNRKDV--EGV-INLLRRALQVLLARAVNIVILASNDTLDLLPP-DD--PLLNKCIDPMDALVCSQMG   73 (75)
Q Consensus         8 aIyavKag~~--~~a-~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~--~~~~~~iD~tdaLara~i~   73 (75)
                      .++.+++|++  +.+ .+.+...++.|..+|+|.||||||++|++.+. ..  +.....|||++++|+++++
T Consensus       166 ~v~~ie~g~~~~~~~~~~~l~~~~~~l~~~g~D~IVLGCTh~p~l~~~i~~~l~~~vpvIDs~~a~a~~~~~  237 (286)
T 2jfq_A          166 FVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSA  237 (286)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHGGGTTCSCSEEEEESSSGGGGHHHHHHHTTTCSEEEEHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCchhHHHHHHHHHHHHHhCCCCEEEEcCcCHHHHHHHHHHHcCCCCEEECcHHHHHHHHHH
Confidence            4567889987  566 88999999999999999999999999998766 32  3357899999999999875

>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*

Probab=98.90  E-value=3.5e-10  Score=82.02  Aligned_cols=66  Identities=12%  Similarity=0.083  Sum_probs=55.7

Q ss_pred             HHHHhhcCCh--HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CC--CcccccCchHHHHHHHHHh
Q 036617            8 ALDALNRKDV--EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DD--PLLNKCIDPMDALVCSQMG   73 (75)
Q Consensus         8 aIyavKag~~--~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~--~~~~~~iD~tdaLara~i~   73 (75)
                      -+..+++|++  +.+++.++..++.|..+|+|.+||||||+|++.+. ..  +.....|||++++||++.+
T Consensus       149 lV~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iVLGCTh~pll~~~i~~~~~~~v~vIDs~~~~a~~~~~  219 (269)
T 3ist_A          149 FVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSA  219 (269)
T ss_dssp             HHHHHHTTCTTSHHHHHHHHHHHGGGGGSCCCEEEECSTTGGGGHHHHHHHHCTTSEEECTHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHH
Confidence            3456889987  57899999999999999999999999999998876 32  2346899999999999865

>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}

Probab=98.85  E-value=4.2e-10  Score=81.26  Aligned_cols=68  Identities=16%  Similarity=0.143  Sum_probs=56.6

Q ss_pred             hhHHHHHhhcCChHHHHHHHHHHHHHHHH--hhhceeeeeccCcccCCCC-CCCc--ccccCchHHHHHHHHHh
Q 036617            5 LIPALDALNRKDVEGVINLLRRALQVLLA--RAVNIVILASNDTLDLLPP-DDPL--LNKCIDPMDALVCSQMG   73 (75)
Q Consensus         5 vm~aIyavKag~~~~a~~ll~~~~~~L~~--rg~~~vILaCTEiPl~L~~-~~~~--~~~~iD~tdaLara~i~   73 (75)
                      +++.||..+.|+ +...+.+...++.|..  .|+|.+||||||+|++.+. ...+  ....|||++++|+++++
T Consensus       165 lv~~ie~~~~~~-~~~~~~l~~~l~~l~~~~~~~D~IVLGCTh~p~l~~~i~~~lg~~vpviDs~~a~a~~~~~  237 (285)
T 2jfn_A          165 MVELAEAKLHGE-DVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAW  237 (285)
T ss_dssp             HHHHHHHHHHTC-CCCHHHHHHHTHHHHTCSSCCSEEEECSTTGGGGHHHHHHHSCTTCEEECSHHHHHHHHHH
T ss_pred             HHHHHHhcccCC-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCcHHHHHHHHHhcCCCCEEECcHHHHHHHHHH
Confidence            678999877777 5578889999999987  5899999999999998776 3323  36899999999999875

>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*

Probab=98.83  E-value=5.5e-10  Score=80.94  Aligned_cols=66  Identities=15%  Similarity=0.104  Sum_probs=55.9

Q ss_pred             HHHHhhcCCh--HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CC--CcccccCchHHHHHHHHHh
Q 036617            8 ALDALNRKDV--EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DD--PLLNKCIDPMDALVCSQMG   73 (75)
Q Consensus         8 aIyavKag~~--~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~--~~~~~~iD~tdaLara~i~   73 (75)
                      -++.+++|++  +...+.+...++.|..+|+|.||||||++|++.+. ..  +.....|||++++|+++++
T Consensus       168 lv~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVLGCTh~p~l~~~i~~~l~~~vpvIDs~~a~a~~~~~  238 (290)
T 2vvt_A          168 FVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSM  238 (290)
T ss_dssp             HHHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEECSTTGGGGHHHHHHHHCTTCEEEEHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCcCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHH
Confidence            4556899987  67889999999999999999999999999998776 32  2356899999999999875

>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}

Probab=98.77  E-value=2e-09  Score=77.24  Aligned_cols=66  Identities=12%  Similarity=0.019  Sum_probs=55.5

Q ss_pred             HHHHhhcCCh--HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CC--CcccccCchHHHHHHHHHh
Q 036617            8 ALDALNRKDV--EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DD--PLLNKCIDPMDALVCSQMG   73 (75)
Q Consensus         8 aIyavKag~~--~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~--~~~~~~iD~tdaLara~i~   73 (75)
                      -.+.+++|++  +...+.+...++.|..+|+|.+|||||++|++.+. ..  +.....|||.+++||.+.+
T Consensus       151 ~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCTh~p~l~~~i~~~~~~~v~vIDs~~~~a~~~~~  221 (276)
T 2dwu_A          151 LATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIISSAEETAIELST  221 (276)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHH
T ss_pred             HHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHH
Confidence            3556888987  67889999999999999999999999999997766 32  2357899999999998765

>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*

Probab=98.68  E-value=8e-10  Score=78.09  Aligned_cols=65  Identities=15%  Similarity=0.085  Sum_probs=53.9

Q ss_pred             HHHhhcCCh--HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCc-ccccCchHHHHHHHHHhc
Q 036617            9 LDALNRKDV--EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPL-LNKCIDPMDALVCSQMGE   74 (75)
Q Consensus         9 IyavKag~~--~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~-~~~~iD~tdaLara~i~~   74 (75)
                      ++.+++|++  +...+.+...++.|..+ +|.||||||++|++.+. ...+ ....|||++++++++++.
T Consensus       143 v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~~p~l~~~i~~~~~~vpviDs~~~~a~~~~~~  211 (254)
T 1b73_A          143 APLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTHYPLLKKEIKKFLGDAEVVDSSEALSLSLHNF  211 (254)
T ss_dssp             TTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCCTTCCHHHHHHHSCSCEEECHHHHHHHTTTTT
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccChHHHHHHHHHHcCCCeEECCHHHHHHHHHHH
Confidence            345788877  67889999999999888 99999999999998776 3323 678999999999988753

>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A

Probab=98.66  E-value=2.4e-09  Score=78.15  Aligned_cols=65  Identities=15%  Similarity=0.076  Sum_probs=50.3

Q ss_pred             hhHHHHHhhcCCh--HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CC--CcccccCchHHHHHHHHHhc
Q 036617            5 LIPALDALNRKDV--EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DD--PLLNKCIDPMDALVCSQMGE   74 (75)
Q Consensus         5 vm~aIyavKag~~--~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~--~~~~~~iD~tdaLara~i~~   74 (75)
                      +++.|   .+|..  +..++.++..++.|.  |+|.+||||||+|++.+. ..  +.....|||++++||++++.
T Consensus       169 lV~~I---E~g~~~~~~~~~~~~~~l~~l~--g~D~iILGCTh~PlL~~~i~~~~~~~v~lIDs~~~~A~~~~~~  238 (274)
T 3uhf_A          169 FVPMV---EEGIFEGDFLQSAMEYYFKNIT--TPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKER  238 (274)
T ss_dssp             HHHHH---HTTCCSSHHHHHHHHHHHTTCC--CCSEEEECSTTGGGGHHHHHHHHCTTCEEEEHHHHHHHHHHHH
T ss_pred             HHHHH---HcCCCCCHHHHHHHHHHHHHhc--CCCEEEECCCChHHHHHHHHHHcCCCCEEEcCHHHHHHHHHHH
Confidence            44554   45665  466777887777776  999999999999999987 32  23578999999999998764

>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*

Probab=98.61  E-value=3.8e-09  Score=75.58  Aligned_cols=62  Identities=15%  Similarity=0.137  Sum_probs=49.6

Q ss_pred             HhhcCCh--HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CC--CcccccCchHHHHHHHHHh
Q 036617           11 ALNRKDV--EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DD--PLLNKCIDPMDALVCSQMG   73 (75)
Q Consensus        11 avKag~~--~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~--~~~~~~iD~tdaLara~i~   73 (75)
                      .+++|++  +...+.+...++.|..+ +|.+|||||++|++.+. ..  +.....|||++++|+++++
T Consensus       159 ~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~iVLGCTh~p~l~~~i~~~~~~~vpviDs~~~~a~~~~~  225 (273)
T 2oho_A          159 IVESNEMCSSIAKKIVYDSLAPLVGK-IDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISV  225 (273)
T ss_dssp             HHCC-----HHHHHHHHHHHTTTTTS-CSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHH
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEcCCCHHHHHHHHHHHhCCCCEEECcHHHHHHHHHH
Confidence            4688988  67889999999999888 99999999999998766 22  2246899999999999875

>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*

Probab=98.58  E-value=6.8e-09  Score=73.48  Aligned_cols=66  Identities=14%  Similarity=0.105  Sum_probs=49.2

Q ss_pred             hhHHHHHhhcCCh--HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCc--------ccccCchHHHHHHHHHh
Q 036617            5 LIPALDALNRKDV--EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPL--------LNKCIDPMDALVCSQMG   73 (75)
Q Consensus         5 vm~aIyavKag~~--~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~--------~~~~iD~tdaLara~i~   73 (75)
                      +++.|   .+|+.  +...+.+.+.++. ...|+|.+||||||+|++.+. ...+        ....|||++++++++++
T Consensus       145 lv~~i---e~g~~~~~~~~~~l~~~~~~-~~~~~d~iILGCTh~p~l~~~i~~~~~~~~~~~~~v~viDs~~~~a~~~~~  220 (255)
T 2jfz_A          145 FVPLI---EESILEGELLETCMHYYFTP-LEILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAIVEYLQQ  220 (255)
T ss_dssp             HHHHH---HTTCCSSHHHHHHHHHHHTT-CCSCCSEEEEESTTGGGGHHHHHHHHHHHSCCSSCCEEEEHHHHHHHHHHH
T ss_pred             HHHHH---HhcccCCHHHHHHHHHHHhh-hcCCCCEEEEcCcChHHHHHHHHHHhCccccCCCCCEEECcHHHHHHHHHH
Confidence            44444   44544  4567777777777 667999999999999998776 3323        36899999999999876


Q ss_pred             c
Q 036617           74 E   74 (75)
Q Consensus        74 ~   74 (75)
                      .
T Consensus       221 ~  221 (255)
T 2jfz_A          221 K  221 (255)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}

Probab=98.42  E-value=5.6e-08  Score=66.50  Aligned_cols=56  Identities=16%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhceeeeeccCcc--cCCCC-CCCcccccCchHHHHHHHHHh
Q 036617           18 EGVINLLRRALQVLLARAVNIVILASNDTL--DLLPP-DDPLLNKCIDPMDALVCSQMG   73 (75)
Q Consensus        18 ~~a~~ll~~~~~~L~~rg~~~vILaCTEiP--l~L~~-~~~~~~~~iD~tdaLara~i~   73 (75)
                      +...+.+...++.+..+|+|.||||||++|  .+.+. ...+....|||.+++++.+.+
T Consensus       157 ~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~t~~~~~~i~~~~~vpvids~~~~a~~~~~  215 (228)
T 2eq5_A          157 DWGRREVINAAKRLKEKGVEVIALGCTGMSTIGIAPVLEEEVGIPVIDPVIASGAVALH  215 (228)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEECCTHHHHHTCHHHHHHHHSSCEECHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHcCCCEEchHHHHHHHHHH
Confidence            457788889999999899999999999999  87776 444577899999999998754

>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}

Probab=98.39  E-value=3.7e-08  Score=67.67  Aligned_cols=52  Identities=12%  Similarity=0.114  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHh--hhceeeeeccCcccC--CCC-CCCcccccCchHHHHHHHHHhc
Q 036617           23 LLRRALQVLLAR--AVNIVILASNDTLDL--LPP-DDPLLNKCIDPMDALVCSQMGE   74 (75)
Q Consensus        23 ll~~~~~~L~~r--g~~~vILaCTEiPl~--L~~-~~~~~~~~iD~tdaLara~i~~   74 (75)
                      -+...++.+...  |+|.|||||||+|++  .+. ...++...|||++++++++++.
T Consensus       157 ~~~~~~~~l~~~~~gadaIvLgCT~l~~~~~~~~l~~~~g~PVids~~~~a~~~l~~  213 (223)
T 2dgd_A          157 TIYRLVKRHLNEVLKADAVYIACTALSTYEAVQYLHEDLDMPVVSENAAAMWEALNK  213 (223)
T ss_dssp             HHHHHHHTTHHHHTTSSEEEECCTTSCCTTHHHHHHHHHTSCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCEEEEeCCcccHHHHHHHHHHHhCCCEEEhHHHHHHHHHHH
Confidence            366777778778  999999999999986  333 3344667999999999998763

>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*

Probab=98.17  E-value=5e-07  Score=63.91  Aligned_cols=52  Identities=17%  Similarity=0.078  Sum_probs=42.6

Q ss_pred             HHHHHHHH-H-HHhhhceeeeeccCcccCC--CC-CCCcccccCchHHHHHHHHHhc
Q 036617           23 LLRRALQV-L-LARAVNIVILASNDTLDLL--PP-DDPLLNKCIDPMDALVCSQMGE   74 (75)
Q Consensus        23 ll~~~~~~-L-~~rg~~~vILaCTEiPl~L--~~-~~~~~~~~iD~tdaLara~i~~   74 (75)
                      -+...++. + ...|+|.|||+|||+|.+.  +. ...+....+||++++++++++.
T Consensus       166 ~~~~~~~~~l~~~~~adaivL~CT~l~~l~~i~~le~~lg~PVids~~a~~w~~lr~  222 (240)
T 3ixl_A          166 TLVDLCVRAFEAAPDSDGILLSSGGLLTLDAIPEVERRLGVPVVSSSPAGFWDAVRL  222 (240)
T ss_dssp             HHHHHHHHHHHTSTTCSEEEEECTTSCCTTHHHHHHHHHSSCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCEEEEeCCCCchhhhHHHHHHHhCCCEEeHHHHHHHHHHHH
Confidence            56667777 6 6789999999999999885  44 4556678899999999999864

>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A

Probab=98.00  E-value=1.6e-06  Score=61.71  Aligned_cols=55  Identities=18%  Similarity=0.079  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHH-HhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHHHHH
Q 036617           18 EGVINLLRRALQVLL-ARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVCSQM   72 (75)
Q Consensus        18 ~~a~~ll~~~~~~L~-~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLara~i   72 (75)
                      +...+.+.+....++ ..|+|.||||||++|.+.+. ...++...|||..+.+|.+.
T Consensus       156 ~~~~~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~~i~~~~gVpvID~~~a~~~~~~  212 (245)
T 3qvl_A          156 GLAQEKVRERCIRALKEDGSGAIVLGSGGMATLAQQLTRELRVPVIDGVSAAVKMVE  212 (245)
T ss_dssp             SHHHHHHHHHHHHHHHHSCCSEEEECCGGGGGGHHHHHHHHTSCEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHcCCeEEccHHHHHHHHH
Confidence            456667777666665 57999999999999987776 45556789999999998754

>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A

Probab=97.96  E-value=1.1e-06  Score=63.02  Aligned_cols=53  Identities=11%  Similarity=0.093  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHhhhceeeee-ccCcccC--CCC-CCCcccccCchHHHHHHHHHhc
Q 036617           22 NLLRRALQVLLARAVNIVILA-SNDTLDL--LPP-DDPLLNKCIDPMDALVCSQMGE   74 (75)
Q Consensus        22 ~ll~~~~~~L~~rg~~~vILa-CTEiPl~--L~~-~~~~~~~~iD~tdaLara~i~~   74 (75)
                      +-+...++.+..+|+|.|||+ |||+|.+  .+. ...+....|||+.++++++++.
T Consensus       194 ~~l~~~~~~l~~~gadaIvLg~CT~l~~~~~~~~le~~lg~PVids~~a~a~~~l~~  250 (273)
T 2xed_A          194 EQVMAAARSLDLSEVDALVISCAVQMPSLPLVETAEREFGIPVLSAATAGAYSILRS  250 (273)
T ss_dssp             HHHHHHHHHSCCTTCSEEEEESSSSSCCTTHHHHHHHHHSSCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCEEEEcCCCCcchHHhHHHHHHHhCCCEEcHHHHHHHHHHHH
Confidence            346777788877899999999 9999986  333 3345677899999999998764

>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}

Probab=94.16  E-value=0.04  Score=38.31  Aligned_cols=63  Identities=13%  Similarity=0.103  Sum_probs=47.5

Q ss_pred             HHhhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHHHHH
Q 036617           10 DALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVCSQM   72 (75)
Q Consensus        10 yavKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLara~i   72 (75)
                      +....|+.+...+.+.+.++.|...|++.++++|.=.--+++. .....-..+...++-++++.
T Consensus        51 ~~~~~~~~~~~~~~l~~~~~~L~~~g~~~iviaCNTa~~~~~~l~~~~~iPvi~i~~~~~~~a~  114 (231)
T 3ojc_A           51 QLQAKGDWQTAAQLLSNAAISLKHAGAEVIVVCTNTMHKVADDIEAACGLPLLHIADATAVQIK  114 (231)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCCEEEECSSGGGGGHHHHHHHHCSCBCCHHHHHHHHHH
T ss_pred             HHHHCCChhHHHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHhCCCCEeccHHHHHHHHH
Confidence            3477899999999999999999999999999999866555544 33344456666666665543

>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}

Probab=92.81  E-value=0.074  Score=36.20  Aligned_cols=65  Identities=14%  Similarity=0.116  Sum_probs=48.4

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHHHHH
Q 036617            7 PALDALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVCSQM   72 (75)
Q Consensus         7 ~aIyavKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLara~i   72 (75)
                      |.+|...++ .+...+.+.+.++.|...|++.++++|+=...+++. .....-..+...++.++++.
T Consensus        46 ~~~~~~~~~-~~~~~~~l~~~~~~L~~~g~d~iviaCnTa~~~~~~l~~~~~iPvi~i~~a~~~~~~  111 (226)
T 2zsk_A           46 KEFFQNPEG-WEGRKKILINAAKALERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEIL  111 (226)
T ss_dssp             HHHHTCTTH-HHHHHHHHHHHHHHHHHHTCSEEEESSSGGGGGHHHHHHHCSSCBCCHHHHHHHHHH
T ss_pred             HHHHhhcCC-cchHHHHHHHHHHHHHHcCCCEEEECCCcHHHHHHHHHHhCCCCEeccHHHHHHHHH
Confidence            444332233 889999999999999999999999999988876655 44445567777777776654

>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A

Probab=90.81  E-value=0.36  Score=30.77  Aligned_cols=29  Identities=14%  Similarity=0.162  Sum_probs=26.0

Q ss_pred             hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617            5 LIPALDALNRKDVEGVINLLRRALQVLLA   33 (75)
Q Consensus         5 vm~aIyavKag~~~~a~~ll~~~~~~L~~   33 (75)
                      +|.||.+.|.||+++|.+++...-+.|..
T Consensus        22 ~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~   50 (103)
T 1wcr_A           22 AYAALKQAKQGDFAAAKAMMDQSRMALNE   50 (103)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999988777654

>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A

Probab=90.65  E-value=0.38  Score=30.76  Aligned_cols=29  Identities=24%  Similarity=0.225  Sum_probs=25.9

Q ss_pred             hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617            5 LIPALDALNRKDVEGVINLLRRALQVLLA   33 (75)
Q Consensus         5 vm~aIyavKag~~~~a~~ll~~~~~~L~~   33 (75)
                      +|.||.+.|.||+++|.+++...-+.|..
T Consensus        24 ~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~   52 (105)
T 2e2a_A           24 LLEALKAAENGDFAKADSLVVEAGSCIAE   52 (105)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999988777654

>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0

Probab=89.66  E-value=0.51  Score=30.39  Aligned_cols=29  Identities=10%  Similarity=0.100  Sum_probs=25.5

Q ss_pred             hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617            5 LIPALDALNRKDVEGVINLLRRALQVLLA   33 (75)
Q Consensus         5 vm~aIyavKag~~~~a~~ll~~~~~~L~~   33 (75)
                      +|.||.+.|.||+++|.+++...-+.|..
T Consensus        26 ~~eAl~~Ak~gdfe~A~~~l~eA~~~l~~   54 (109)
T 3k1s_A           26 AMEALQFAKQGKMAEADEAMVKAKEAINE   54 (109)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999988766653

>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0

Probab=89.16  E-value=0.56  Score=30.78  Aligned_cols=29  Identities=28%  Similarity=0.222  Sum_probs=25.6

Q ss_pred             hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617            5 LIPALDALNRKDVEGVINLLRRALQVLLA   33 (75)
Q Consensus         5 vm~aIyavKag~~~~a~~ll~~~~~~L~~   33 (75)
                      +|.||.+.|.||+++|.+++...-+.|..
T Consensus        41 ~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~   69 (120)
T 3l8r_A           41 VHEAFDAMREKNYILAEQKLQEANDELLK   69 (120)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999988776653

>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}

Probab=85.01  E-value=1  Score=31.99  Aligned_cols=38  Identities=16%  Similarity=0.206  Sum_probs=31.8

Q ss_pred             CChHHHHHHHHHHHHHHHHhhhceeeeeccCccc-CCCC
Q 036617           15 KDVEGVINLLRRALQVLLARAVNIVILASNDTLD-LLPP   52 (75)
Q Consensus        15 g~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl-~L~~   52 (75)
                      ++.++..+.+...++.|..+|++.+|++|.=..- +|+.
T Consensus        49 ~~~~~i~~~~~~~~~~L~~~g~~~iVIACNTa~~~al~~   87 (268)
T 3out_A           49 KSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDI   87 (268)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChHHHHHHH
Confidence            6779999999999999999999999999975553 4443

>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A

Probab=84.73  E-value=0.22  Score=33.75  Aligned_cols=57  Identities=11%  Similarity=0.050  Sum_probs=42.0

Q ss_pred             ChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHHHHH
Q 036617           16 DVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVCSQM   72 (75)
Q Consensus        16 ~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLara~i   72 (75)
                      +.+...+.+.+.++.|...|++.++++|+=.-.+++. .....-..+...++-++++.
T Consensus        55 ~~~~~~~~l~~~~~~l~~~g~d~iviaCnTa~~~~~~l~~~~~iPvi~i~~~~~~~a~  112 (228)
T 1jfl_A           55 KGEDPRPQLIWTAKRLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVK  112 (228)
T ss_dssp             SSCCCHHHHHHHHHHHHHHTCSEEECSCTGGGGGHHHHHHHCSSCBCCHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHhCCCCEechHHHHHHHHH
Confidence            4677788899999999999999999999977555655 33344556666666666543

>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}

Probab=84.60  E-value=0.51  Score=31.64  Aligned_cols=53  Identities=9%  Similarity=0.066  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHHHHH
Q 036617           19 GVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVCSQM   72 (75)
Q Consensus        19 ~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLara~i   72 (75)
                      ...+-+...++.|...|+|.|+++|+=- .+++. ........+...++.++.+.
T Consensus        59 ~~~~~l~~~~~~l~~~g~d~iviaCnta-~~~~~l~~~~~iPvi~i~~~~~~~a~  112 (228)
T 2eq5_A           59 EAEPKIIRLAKEFEREGVDAIIISCAAD-PAVEKVRKLLSIPVIGAGSSVSALAL  112 (228)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEECSTTC-TTHHHHHHHCSSCEEEHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHCCCCEEEEeCCch-HHHHHHHHhCCCCEeCccHHHHHHHH
Confidence            3444566777888889999999999865 44433 23334446666666665543

>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}

Probab=82.33  E-value=0.28  Score=34.47  Aligned_cols=58  Identities=14%  Similarity=0.191  Sum_probs=41.6

Q ss_pred             CChHHHHHHHHHHHHHHHHhhhceeeeeccCccc-CCCC-CCCcccccCchHHHHHHHHH
Q 036617           15 KDVEGVINLLRRALQVLLARAVNIVILASNDTLD-LLPP-DDPLLNKCIDPMDALVCSQM   72 (75)
Q Consensus        15 g~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl-~L~~-~~~~~~~~iD~tdaLara~i   72 (75)
                      ++.++..+.+...++.|...|++.++++|+=.+- +++. .....-..|..++.-++.+.
T Consensus        45 ~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~ep~~~~A~  104 (267)
T 2gzm_A           45 RSREEVRQFTWEMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGVIHPGSRTAL  104 (267)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeecHHHHHHHH
Confidence            4567788889999999999999999999998883 5665 33334445554555555543

>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A

Probab=81.44  E-value=1.1  Score=32.19  Aligned_cols=39  Identities=23%  Similarity=0.311  Sum_probs=33.1

Q ss_pred             cCChHHHHHHHHHHHHHHHHhhhceeeeeccCcc-cCCCC
Q 036617           14 RKDVEGVINLLRRALQVLLARAVNIVILASNDTL-DLLPP   52 (75)
Q Consensus        14 ag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiP-l~L~~   52 (75)
                      .++.++..+.+.+.++.|..+|++.+|++|.=.. .+|+.
T Consensus        65 ~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~  104 (274)
T 3uhf_A           65 VKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDA  104 (274)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHH
Confidence            5678899999999999999999999999997666 34554

>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*

Probab=81.38  E-value=1.2  Score=30.96  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=33.1

Q ss_pred             cCChHHHHHHHHHHHHHHHHhhhceeeeeccCccc-CCCC
Q 036617           14 RKDVEGVINLLRRALQVLLARAVNIVILASNDTLD-LLPP   52 (75)
Q Consensus        14 ag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl-~L~~   52 (75)
                      .+..++..+.+...++.|..+|++.++++|+=.+- +++.
T Consensus        41 ~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTa~~~~~~~   80 (255)
T 2jfz_A           41 TKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEE   80 (255)
T ss_dssp             TSCHHHHHHHHHHHHHHHGGGCCSCEEECCHHHHHHTHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHH
Confidence            45678889999999999999999999999987773 5555

>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*

Probab=80.59  E-value=0.54  Score=32.60  Aligned_cols=58  Identities=14%  Similarity=0.186  Sum_probs=41.3

Q ss_pred             CChHHHHHHHHHHHHHHHHhhhceeeeeccCcc-cCCCC-CCCcccccCchHHHHHHHHH
Q 036617           15 KDVEGVINLLRRALQVLLARAVNIVILASNDTL-DLLPP-DDPLLNKCIDPMDALVCSQM   72 (75)
Q Consensus        15 g~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiP-l~L~~-~~~~~~~~iD~tdaLara~i   72 (75)
                      .+.++-.+.+...++.|...|++.++++|+=.. .+++. .....-..+...++-++.+.
T Consensus        42 ~s~~~i~~~~~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~e~~~~~A~  101 (254)
T 1b73_A           42 RSKDTIIRYSLECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEAL  101 (254)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeeeHHHHHHHH
Confidence            346677777888899999999999999999887 45665 33344455555565555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1jfla2	113	Aspartate racemase {Archaeon Pyrococcus horikoshii	99.64
d1b74a2	147	Glutamate racemase {Aquifex pyrophilus [TaxId: 271	98.21
d1jfla1	115	Aspartate racemase {Archaeon Pyrococcus horikoshii	91.24
d2e2aa_	104	Enzyme IIa from lactose specific PTS, IIa-lac {Lac	89.15

>d1jfla2 c.78.2.1 (A:116-228) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Aspartate racemase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.64  E-value=7.2e-17  Score=100.38  Aligned_cols=69  Identities=19%  Similarity=0.261  Sum_probs=61.4

Q ss_pred             hhHHHHH-hhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCCCCCcccccCchHHHHHHHHHhc
Q 036617            5 LIPALDA-LNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPPDDPLLNKCIDPMDALVCSQMGE   74 (75)
Q Consensus         5 vm~aIya-vKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~~~~~~~~~iD~tdaLara~i~~   74 (75)
                      ++..||. .+.|+.+.+++.+...++.|..+|+|.+||||||+|++++.. .....+|||++.||+++++.
T Consensus        40 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~g~d~iILGCTelpll~~~~-~~~~~~iD~~~~la~~~v~~  109 (113)
T d1jfla2          40 VMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQD-DLKVPLIDPMDVIAEVAVKV  109 (113)
T ss_dssp             HHHHHHTTGGGTCHHHHHHHHHHHHHHHHHTTCSEEEECSHHHHHHCCGG-GCSSCEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccccchHHHHHHHHHhhhhhcCCCCEEEEccccHHHHhhhh-cCCCcEECcHHHHHHHHHHH
Confidence            7788887 889999999999999999999999999999999999999882 23456999999999999863

>d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Glutamate racemase
species: Aquifex pyrophilus [TaxId: 2714]

Probab=98.21  E-value=4.9e-08  Score=63.90  Aligned_cols=60  Identities=17%  Similarity=0.113  Sum_probs=45.1

Q ss_pred             hhcCCh--HHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCc-ccccCchHHHHHHHHH
Q 036617           12 LNRKDV--EGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPL-LNKCIDPMDALVCSQM   72 (75)
Q Consensus        12 vKag~~--~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~-~~~~iD~tdaLara~i   72 (75)
                      +.+|..  +...++++..++.+ ..++|.+|||||+.|++-+. ..-+ ..++|||.+++|+...
T Consensus        41 IE~g~~~~~~~~~~i~~~l~~l-~~~id~lvLGCTHyP~l~~~i~~~~~~v~iIDpa~~vA~~~~  104 (147)
T d1b74a2          41 AEEGLLEGEITRKVVEHYLKEF-KGKIDTLILGCTHYPLLKKEIKKFLGDAEVVDSSEALSLSLH  104 (147)
T ss_dssp             CCTTTSSSTTHHHHHHHHTTTT-TTTCSEEEECCCCTTSCHHHHHHHHCSCEEECHHHHHHHHTT
T ss_pred             HHcCCcccHHHHHHHHHHHHHh-hhcCcEEEEecCcchhHHHHHHHHCCCCEEEECHHHHHHHHH
Confidence            445543  66777787777765 46899999999999998765 2211 4789999999999754

>d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Aspartate racemase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.24  E-value=0.02  Score=34.68  Aligned_cols=62  Identities=11%  Similarity=0.034  Sum_probs=48.5

Q ss_pred             HHhhcCChHHHHHHHHHHHHHHHHhhhceeeeeccCcccCCCC-CCCcccccCchHHHHHHHH
Q 036617           10 DALNRKDVEGVINLLRRALQVLLARAVNIVILASNDTLDLLPP-DDPLLNKCIDPMDALVCSQ   71 (75)
Q Consensus        10 yavKag~~~~a~~ll~~~~~~L~~rg~~~vILaCTEiPl~L~~-~~~~~~~~iD~tdaLara~   71 (75)
                      ...-.|+-+...+.|.+.+++|...||+.++++|.=.-.+.+. ....+-.+++=.|+.++..
T Consensus        49 ~~~~~~~~~~~~~~l~~~~~~Le~~Ga~~i~i~cNT~H~~~d~i~~~~~iP~l~i~~~t~~~i  111 (115)
T d1jfla1          49 TAYILGKGEDPRPQLIWTAKRLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKV  111 (115)
T ss_dssp             HHHHTTSSCCCHHHHHHHHHHHHHHTCSEEECSCTGGGGGHHHHHHHCSSCBCCHHHHHHHHH
T ss_pred             HHHHhccccchHHHHHHHHHHHHhcCCCEEEEcCcHHHHHHHHHHHHCCCCEecHHHHHHHHH
Confidence            3333466667778888999999999999999999988888777 5555666888888777664

>d2e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac {Lactococcus lactis [TaxId: 1358]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Enzyme IIa from lactose specific PTS, IIa-lac
family: Enzyme IIa from lactose specific PTS, IIa-lac
domain: Enzyme IIa from lactose specific PTS, IIa-lac
species: Lactococcus lactis [TaxId: 1358]

Probab=89.15  E-value=0.28  Score=29.80  Aligned_cols=29  Identities=24%  Similarity=0.225  Sum_probs=25.7

Q ss_pred             hhHHHHHhhcCChHHHHHHHHHHHHHHHH
Q 036617            5 LIPALDALNRKDVEGVINLLRRALQVLLA   33 (75)
Q Consensus         5 vm~aIyavKag~~~~a~~ll~~~~~~L~~   33 (75)
                      ++.|+.+.|.||+++|.+++...-+.|..
T Consensus        24 ~~eAl~~ak~gdfe~A~~~l~eA~e~l~~   52 (104)
T d2e2aa_          24 LLEALKAAENGDFAKADSLVVEAGSCIAE   52 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999988776653