Citrus Sinensis ID: 036632

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRMAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcHHccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHcHHHHHcccHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEEEccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MVFDLHLSSLRnanvktlweddvhphYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRMAVDDLLTKLAklfpkpksqIVFLINNYDMTIAVLKeaspeggkiQLHYEELLKSNTALFVEELLLEHFSDLIKFVKtrasedssstsekpitvaEIEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSikrvaggsalnkDLVSISSIMYEIKKYSRTF
Flexible Loop (DISEMBL)
MVFDLHLSSLRnanvktlweddvHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRMAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKtrasedssstsekpitvaeiepLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSikrvaggsalnkdlvsissimyeikkysrtf
Low Complexity Region (SEG)
MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRMAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF
Disordered region (IsUnstruct)
****LHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRMAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVK**************ITVAEIEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIK******
Disordered Region (DISOPRED)
MVFDLHLSSLRNANV*****DDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRMAVDDLLTKLAK****PKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVK*********************PLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYS***
Disordered Region (DISEMBL)
MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRMAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKT************PITVAEIEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF
Disordered Region (DISPRO)
MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRMAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRMAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
O55166	723	Vacuolar protein sorting-	yes	no	0.987	0.327	0.334	5e-33
Q8C754	723	Vacuolar protein sorting-	yes	no	0.987	0.327	0.334	5e-33
Q8N1B4	723	Vacuolar protein sorting-	yes	no	0.987	0.327	0.330	9e-33
Q5TJF0	723	Vacuolar protein sorting-	yes	no	0.987	0.327	0.330	1e-32
G5EFV8	702	Vacuolar protein sorting-	yes	no	0.991	0.339	0.264	4e-21

>sp|O55166|VPS52_RAT Vacuolar protein sorting-associated protein 52 homolog OS=Rattus norvegicus GN=Vps52 PE=2 SV=2

 Score =  141 bits (355), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 140/245 (57%), Gaps = 8/245 (3%)

Query: 1   MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
           ++ ++++ S+R+ + + L   D  PHY+ RRYAEF+++L+ +N    + +    + +L++
Sbjct: 482 LILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTLQLLGQLQV 541

Query: 61  AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
            V++ + ++A  F   K Q+VFLINNYDM + VL E + +  K    +++LL + T  F+
Sbjct: 542 EVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFI 601

Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEK-PITVAEIEPLVKDFASRWKAAIELMHKDVI 179
           EELL   F  L+ FVK   +      +E+     A +  L++ F S WKA++E + +DV+
Sbjct: 602 EELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKASVESLSQDVM 661

Query: 180 TSFSNFLCGMEILRAALTQLLLYYTR----LSDSIKRVAGGSALNKDLVSISSIMYEIKK 235
            SF+NF  G  I++ ALTQL+  Y R    LS    R     A   +L++I  +M E+KK
Sbjct: 662 RSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARA---ELINIHHLMVELKK 718

Query: 236 YSRTF 240
           +   F
Sbjct: 719 HKPNF 723

May be involved in retrograde transport from early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.
Rattus norvegicus (taxid: 10116)

>sp|Q8C754|VPS52_MOUSE Vacuolar protein sorting-associated protein 52 homolog OS=Mus musculus GN=Vps52 PE=2 SV=1

 Score =  140 bits (354), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 140/245 (57%), Gaps = 8/245 (3%)

Query: 1   MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
           ++ ++++ S+R+ + + L   D  PHY+ RRYAEF+++L+ +N    + +    + +L++
Sbjct: 482 LILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTLQLLGQLQV 541

Query: 61  AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
            V++ + ++A  F   K Q+VFLINNYDM + VL E + +  K    +++LL + T  F+
Sbjct: 542 EVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFI 601

Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEK-PITVAEIEPLVKDFASRWKAAIELMHKDVI 179
           EELL   F  L+ FVK   +      +E+     A +  L++ F S WKA++E + +DV+
Sbjct: 602 EELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKASVESLSQDVM 661

Query: 180 TSFSNFLCGMEILRAALTQLLLYYTR----LSDSIKRVAGGSALNKDLVSISSIMYEIKK 235
            SF+NF  G  I++ ALTQL+  Y R    LS    R     A   +L++I  +M E+KK
Sbjct: 662 RSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARA---ELINIHHLMVELKK 718

Query: 236 YSRTF 240
           +   F
Sbjct: 719 HKPNF 723

May be involved in retrograde transport from early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.

Mus musculus (taxid: 10090)

>sp|Q8N1B4|VPS52_HUMAN Vacuolar protein sorting-associated protein 52 homolog OS=Homo sapiens GN=VPS52 PE=1 SV=1

 Score =  140 bits (353), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 140/245 (57%), Gaps = 8/245 (3%)

Query: 1   MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
           ++ ++++ S+R+ + + L   D  PHY+ RRYAEF+++L+ +N    + +    + +L++
Sbjct: 482 LILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTMQLLGQLQV 541

Query: 61  AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
            V++ + ++A  F   K Q+VFLINNYDM + VL E + +  K    +++LL + T  F+
Sbjct: 542 EVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFI 601

Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEK-PITVAEIEPLVKDFASRWKAAIELMHKDVI 179
           EELL   F  L+ FVK   +      +E+     A +  L++ F S WK+++E + +DV+
Sbjct: 602 EELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKSSVESLSQDVM 661

Query: 180 TSFSNFLCGMEILRAALTQLLLYYTR----LSDSIKRVAGGSALNKDLVSISSIMYEIKK 235
            SF+NF  G  I++ ALTQL+  Y R    LS    R     A   +L++I  +M E+KK
Sbjct: 662 RSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARA---ELINIHHLMVELKK 718

Query: 236 YSRTF 240
           +   F
Sbjct: 719 HKPNF 723

May be involved in retrograde transport of early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.

Homo sapiens (taxid: 9606)

>sp|Q5TJF0|VPS52_CANFA Vacuolar protein sorting-associated protein 52 homolog OS=Canis familiaris GN=VPS52 PE=3 SV=1

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 140/245 (57%), Gaps = 8/245 (3%)

Query: 1   MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
           ++ ++++ S+R+ + + L   D  PHY+ RRYAEF+++L+ +N    + +    + +L++
Sbjct: 482 LILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTVPNERTMQLLGQLQV 541

Query: 61  AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
            V++ + ++A  F   K Q+VFLINNYDM + VL E + +  K    +++LL + T  F+
Sbjct: 542 EVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFI 601

Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEK-PITVAEIEPLVKDFASRWKAAIELMHKDVI 179
           EELL   F  L+ FVK   +      +E+     A +  L++ F S WK+++E + +DV+
Sbjct: 602 EELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKSSVESLSQDVM 661

Query: 180 TSFSNFLCGMEILRAALTQLLLYYTR----LSDSIKRVAGGSALNKDLVSISSIMYEIKK 235
            SF+NF  G  I++ ALTQL+  Y R    LS    R     A   +L++I  +M E+KK
Sbjct: 662 RSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARA---ELINIHHLMVELKK 718

Query: 236 YSRTF 240
           +   F
Sbjct: 719 HKPNF 723

May be involved in retrograde transport from early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD.

Canis familiaris (taxid: 9615)

>sp|G5EFV8|VPS52_CAEEL Vacuolar protein sorting-associated protein 52 homolog OS=Caenorhabditis elegans GN=vps-52 PE=1 SV=2

 Score =  101 bits (252), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 129/250 (51%), Gaps = 12/250 (4%)

Query: 1   MVFDLHLSSLRNANVKTLWED---DVHPHYVMRRYAEFAASLIHLNVEYGDGQ-----LE 52
           +V   H  S+++ ++K L      D  PH+++RRYAE  ++  HL +    G+     +E
Sbjct: 455 LVMSQHYESVKSVDLKKLMHSGSLDARPHFIVRRYAELTSA--HLMIAKASGKEMGAKME 512

Query: 53  LNMERLRMAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELL 112
             +E    +++ LLT+++ +    K++ VFLINNYD+ ++++     +  KI     EL 
Sbjct: 513 AVLENSEDSIEQLLTRMSAMQQTQKNKHVFLINNYDLILSIIDNEESKHTKIYAIVHELE 572

Query: 113 KSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAE-IEPLVKDFASRWKAAI 171
           + +   FVEE+L  H   +IKFV    S      ++  +   + +  +V +F ++W+ A+
Sbjct: 573 QKSIDDFVEEMLEPHIGYMIKFVNECESLIVQGHTQLLVRYNDKVGTVVANFNAKWRPAV 632

Query: 172 ELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKR-VAGGSALNKDLVSISSIM 230
           + ++ + I  F+NF  G  IL+   T+ + Y  R +  +   V   + +   LV++  +M
Sbjct: 633 DSINSECIQLFTNFSLGTTILQTIFTKYVQYINRFTKILSHDVFAKNPVCSQLVNVHQVM 692

Query: 231 YEIKKYSRTF 240
            EIK++   +
Sbjct: 693 LEIKRFKPAY 702

Acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex facilitates tethering as well as SNARE complex assembly at the Golgi.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
255557102	713	Vacuolar protein sorting protein, putati	1.0	0.336	0.920	1e-127
224086701	718	predicted protein [Populus trichocarpa]	1.0	0.334	0.9	1e-125
225423672	707	PREDICTED: vacuolar protein sorting-asso	1.0	0.339	0.866	1e-122
356573151	707	PREDICTED: vacuolar protein sorting-asso	1.0	0.339	0.866	1e-122
357441295	699	Vacuolar protein sorting-associated prot	1.0	0.343	0.879	1e-122
449441768	698	PREDICTED: vacuolar protein sorting-asso	1.0	0.343	0.879	1e-122
356506007	707	PREDICTED: vacuolar protein sorting-asso	1.0	0.339	0.866	1e-122
388519613	327	unknown [Medicago truncatula]	1.0	0.733	0.875	1e-120
297838955	707	hypothetical protein ARALYDRAFT_476259 [	1.0	0.339	0.841	1e-119
12323838	735	ARE1-like protein; 78992-73047 [Arabidop	1.0	0.326	0.829	1e-118

>gi|255557102|ref|XP_002519583.1| Vacuolar protein sorting protein, putative [Ricinus communis] gi|223541241|gb|EEF42794.1| Vacuolar protein sorting protein, putative [Ricinus communis]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/240 (92%), Positives = 228/240 (95%)

Query: 1   MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
           MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEF ASLIHLNVEYGDGQLELN+ERLRM
Sbjct: 474 MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFTASLIHLNVEYGDGQLELNLERLRM 533

Query: 61  AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
           A+DDLL KLAK F KPK QIVFLINNYDMTI+VLKEA PEGGKIQLH+EELLKSNTALFV
Sbjct: 534 AIDDLLIKLAKTFTKPKLQIVFLINNYDMTISVLKEAGPEGGKIQLHFEELLKSNTALFV 593

Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT 180
           EELLLEHFSDLIKFVKTRASED SS SEKPITVAE+E +VKDF SRWKAAIELMHKDVIT
Sbjct: 594 EELLLEHFSDLIKFVKTRASEDPSSNSEKPITVAEVETIVKDFGSRWKAAIELMHKDVIT 653

Query: 181 SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF 240
           SFSNFLCGMEILRAALTQLLLYYTRLSD IKR+ GGSALNKDLVSISSIMYEIKKYSRTF
Sbjct: 654 SFSNFLCGMEILRAALTQLLLYYTRLSDCIKRIVGGSALNKDLVSISSIMYEIKKYSRTF 713

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086701|ref|XP_002307938.1| predicted protein [Populus trichocarpa] gi|222853914|gb|EEE91461.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/240 (90%), Positives = 229/240 (95%)

Query: 1   MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
           MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEF ASLIHLNVEYGDGQLELNMERLRM
Sbjct: 479 MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFTASLIHLNVEYGDGQLELNMERLRM 538

Query: 61  AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
           A+DDLL KLAK FPKPK QIVFLINNYDMTIAVLKEA  EGGKIQLH+EELLKSNT++FV
Sbjct: 539 AIDDLLMKLAKTFPKPKPQIVFLINNYDMTIAVLKEAGSEGGKIQLHFEELLKSNTSMFV 598

Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT 180
           EELLLEHFSDLIKFVK+RASE+  S +EKPITVAE+E +VKDFASRWKAAIELMHKDVIT
Sbjct: 599 EELLLEHFSDLIKFVKSRASEEPGSGTEKPITVAEVETIVKDFASRWKAAIELMHKDVIT 658

Query: 181 SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF 240
           SFSNFLCGMEILRAALTQLLLYYTRLSD+IK++ GGSALNKDLVSISSIMYEI+KYSRTF
Sbjct: 659 SFSNFLCGMEILRAALTQLLLYYTRLSDTIKKIVGGSALNKDLVSISSIMYEIRKYSRTF 718

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423672|ref|XP_002276491.1| PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Vitis vinifera] gi|297737982|emb|CBI27183.3| unnamed protein product [Vitis vinifera]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/240 (86%), Positives = 227/240 (94%)

Query: 1   MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
           MVFD+HL+SLRNAN++ LWEDD+HPHYVMRRYAEF +SLIHLNVEYGDGQLELN+ERLRM
Sbjct: 468 MVFDMHLNSLRNANMRALWEDDIHPHYVMRRYAEFTSSLIHLNVEYGDGQLELNLERLRM 527

Query: 61  AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
           A+DD++ KLAK F K K Q VFLINNYDMTIA+LKEA PEGGKIQLH+EELLKSNTA+FV
Sbjct: 528 AIDDMVIKLAKTFSKTKLQTVFLINNYDMTIAILKEAGPEGGKIQLHFEELLKSNTAIFV 587

Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT 180
           EELLLEHF DLIKFVKTRASED SS+SE+PITVAE+EPLVKDFASRWK+AIELMHKDVIT
Sbjct: 588 EELLLEHFGDLIKFVKTRASEDPSSSSERPITVAEVEPLVKDFASRWKSAIELMHKDVIT 647

Query: 181 SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF 240
           SFSNFLCGMEILRAALTQLLLYYTRLSD IKR+ GGSALNKDLVSISSIMYEI+KYSRTF
Sbjct: 648 SFSNFLCGMEILRAALTQLLLYYTRLSDCIKRIPGGSALNKDLVSISSIMYEIRKYSRTF 707

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573151|ref|XP_003554727.1| PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Glycine max]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/240 (86%), Positives = 225/240 (93%)

Query: 1   MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
           +VFD+HL+SLRNANVKTLWEDDVHPHYVMRRYAEF ASLIHLN E GDGQL+LN+ERLRM
Sbjct: 468 LVFDMHLNSLRNANVKTLWEDDVHPHYVMRRYAEFTASLIHLNAECGDGQLDLNLERLRM 527

Query: 61  AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
           AVDDL  KLAK FPKPKSQ VFLINNYDMTI VLKEA PEGGKIQ+H+EELLKSNT +FV
Sbjct: 528 AVDDLFIKLAKNFPKPKSQTVFLINNYDMTITVLKEAGPEGGKIQMHFEELLKSNTTIFV 587

Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT 180
           EELL EHF+DLIKFVK++ASED +S+ +KPITVAE+EPLVKDFASRWKAAIELMHKDVIT
Sbjct: 588 EELLQEHFNDLIKFVKSKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVIT 647

Query: 181 SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF 240
           SFSNFLCGMEILRAALTQLLLYYTRLSD IKR+ GGSALNKDLVSISSIMYEI+KYSRTF
Sbjct: 648 SFSNFLCGMEILRAALTQLLLYYTRLSDCIKRIVGGSALNKDLVSISSIMYEIRKYSRTF 707

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441295|ref|XP_003590925.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] gi|355479973|gb|AES61176.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/240 (87%), Positives = 226/240 (94%)

Query: 1   MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
           MVFD+HL+SLRNANVKTLWEDDVHPHYVMRRYAEF ASLIHLN E+GDGQLELN+ERLRM
Sbjct: 460 MVFDMHLNSLRNANVKTLWEDDVHPHYVMRRYAEFTASLIHLNSEFGDGQLELNLERLRM 519

Query: 61  AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
           A+DDLL KLAK F KPK Q VFLINNYDMTIAVLKEA PE GKIQ+H+EELLKSNTALFV
Sbjct: 520 AIDDLLIKLAKNFTKPKLQTVFLINNYDMTIAVLKEAGPEAGKIQMHFEELLKSNTALFV 579

Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT 180
           EELL EHF+DLIKFVK +ASED +S+ +KPITVAE+EPLVKDFASRWKAAIELMHKDVIT
Sbjct: 580 EELLQEHFNDLIKFVKAKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVIT 639

Query: 181 SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF 240
           SFSNFLCGMEILRAALTQLLLYYTRLSDSIKR+ GGSALNKDLVSISSIMYEI+KYSRTF
Sbjct: 640 SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEIRKYSRTF 699

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441768|ref|XP_004138654.1| PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Cucumis sativus] gi|449490141|ref|XP_004158519.1| PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Cucumis sativus]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/240 (87%), Positives = 224/240 (93%)

Query: 1   MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
           MVFD+HLSSLRNANVKTLWEDDVHPHYVMRRYAEF ASLIHLNVEYGDGQL+LN+ERLRM
Sbjct: 459 MVFDMHLSSLRNANVKTLWEDDVHPHYVMRRYAEFTASLIHLNVEYGDGQLDLNLERLRM 518

Query: 61  AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
           A+DDLL KLAK F K KSQ VFLINNYDMTI+VLKEA PEGGKI +H+E+LLKSNTALFV
Sbjct: 519 AIDDLLIKLAKTFSKAKSQTVFLINNYDMTISVLKEAGPEGGKILVHFEDLLKSNTALFV 578

Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT 180
           EELL EHFS LIKFVKTR SED SS  ++PITVAE+EPLVKDFASRWKAAIELMHKDVIT
Sbjct: 579 EELLAEHFSQLIKFVKTRGSEDLSSNPDRPITVAEVEPLVKDFASRWKAAIELMHKDVIT 638

Query: 181 SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF 240
           SFSNFLCGMEILRAALTQLLLYYTRLSD IKR+ GGSALNKDLVSISSIMYEI+KYSRTF
Sbjct: 639 SFSNFLCGMEILRAALTQLLLYYTRLSDCIKRIVGGSALNKDLVSISSIMYEIRKYSRTF 698

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506007|ref|XP_003521780.1| PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Glycine max]

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/240 (86%), Positives = 225/240 (93%)

Query: 1   MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
           +VFD+HL+SLRNANVKTLWEDDVHPHYVMRRYAEF ASLIHLN E GDGQL+LN+ERLRM
Sbjct: 468 LVFDMHLNSLRNANVKTLWEDDVHPHYVMRRYAEFTASLIHLNAECGDGQLDLNLERLRM 527

Query: 61  AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
           AVDDLL KLAK FPKPKSQ VFLINNYDMTI VLKEA PEGGKIQ+H+EELLKSNT +FV
Sbjct: 528 AVDDLLIKLAKNFPKPKSQTVFLINNYDMTITVLKEAGPEGGKIQMHFEELLKSNTTIFV 587

Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT 180
           EELL EHF++LIKFVK++ASED +S  +KPITVAE+EPLVKDFASRWKAAIELMHKDVIT
Sbjct: 588 EELLQEHFNNLIKFVKSKASEDPTSNPDKPITVAEVEPLVKDFASRWKAAIELMHKDVIT 647

Query: 181 SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF 240
           SFSNFLCGMEILRAALTQLLLYYTRLSD IKR+ GGSALNKDLVSISSIMYEI+KYSRTF
Sbjct: 648 SFSNFLCGMEILRAALTQLLLYYTRLSDCIKRIVGGSALNKDLVSISSIMYEIRKYSRTF 707

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519613|gb|AFK47868.1| unknown [Medicago truncatula]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/240 (87%), Positives = 225/240 (93%)

Query: 1   MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
           MVFD+HL+SLRNANVKTLWEDDVHPHYVMRRYAEF ASLIHLN E+GDGQLELN+ERLRM
Sbjct: 88  MVFDMHLNSLRNANVKTLWEDDVHPHYVMRRYAEFTASLIHLNSEFGDGQLELNLERLRM 147

Query: 61  AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
           A+DDLL KLAK F KPK Q VFLINNYDMTIAVLKEA PE GKIQ+H+EELLKSNTALFV
Sbjct: 148 AIDDLLIKLAKNFTKPKLQTVFLINNYDMTIAVLKEAGPEAGKIQMHFEELLKSNTALFV 207

Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT 180
           EELL EHF+DLIKFVK +ASED +S+ +KPITVAE+EPLVKDFASRWKAAIELMHKDVIT
Sbjct: 208 EELLQEHFNDLIKFVKAKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVIT 267

Query: 181 SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF 240
           SFSNFLCGMEILRAALTQLLLYYTRLSDSIKR+ GG ALNKDLVSISSIMYEI+KYSRTF
Sbjct: 268 SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGFALNKDLVSISSIMYEIRKYSRTF 327

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838955|ref|XP_002887359.1| hypothetical protein ARALYDRAFT_476259 [Arabidopsis lyrata subsp. lyrata] gi|297333200|gb|EFH63618.1| hypothetical protein ARALYDRAFT_476259 [Arabidopsis lyrata subsp. lyrata]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/240 (84%), Positives = 224/240 (93%)

Query: 1   MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
           MVFD HLSSLR+AN+KTLWEDDVHPHYVMRRYAEF AS IHLNVEYGDGQL++N+ERLRM
Sbjct: 468 MVFDSHLSSLRDANIKTLWEDDVHPHYVMRRYAEFTASFIHLNVEYGDGQLDINLERLRM 527

Query: 61  AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
           AVD L+ KLAKLFP+PK QIVFLINNYDMTIAVLKEA PEGGKIQ+H+EELLKSNT+LFV
Sbjct: 528 AVDGLILKLAKLFPRPKQQIVFLINNYDMTIAVLKEAGPEGGKIQMHFEELLKSNTSLFV 587

Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT 180
           EELL+EHFSDLIKFVK+RASEDSSS  E+ ITVAE+EPLVKDF SRWK AIELM KD+IT
Sbjct: 588 EELLVEHFSDLIKFVKSRASEDSSSNPERSITVAEVEPLVKDFGSRWKTAIELMDKDIIT 647

Query: 181 SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF 240
           SFSNFLCGM+ILRAALTQLLLYYTRL+D IK++ GGSALN+DLVSI SIMYEI+KYS+TF
Sbjct: 648 SFSNFLCGMDILRAALTQLLLYYTRLTDCIKKMDGGSALNRDLVSIQSIMYEIRKYSKTF 707

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323838|gb|AAG51892.1|AC016162_13 ARE1-like protein; 78992-73047 [Arabidopsis thaliana]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/240 (82%), Positives = 222/240 (92%)

Query: 1   MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
           MVFD HLSSLR+AN+KTLWEDDVHPHYVMRRYAEF AS IHLNVEYGDGQL++N+ERLRM
Sbjct: 496 MVFDSHLSSLRDANIKTLWEDDVHPHYVMRRYAEFTASFIHLNVEYGDGQLDINLERLRM 555

Query: 61  AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
           AVD L+ KLAKLFP+PK QIVFLINNYDMTIAVLKEA PEGGKIQ+H+EE+LKSNT+LFV
Sbjct: 556 AVDGLILKLAKLFPRPKQQIVFLINNYDMTIAVLKEAGPEGGKIQMHFEEMLKSNTSLFV 615

Query: 121 EELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT 180
           EELL+EHFSDLIKFVK RASEDSS   E+ IT+AE+EPLVKDF SRWK AIELM KD+IT
Sbjct: 616 EELLVEHFSDLIKFVKNRASEDSSLNPERSITIAEVEPLVKDFGSRWKTAIELMDKDIIT 675

Query: 181 SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF 240
           SFSNFLCGM+ILRAALTQLLLYYTRL+D IK++ GGSALN+DLVSI SIMYEI+KYS+TF
Sbjct: 676 SFSNFLCGMDILRAALTQLLLYYTRLTDCIKKIDGGSALNRDLVSIQSIMYEIRKYSKTF 735

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2032343	707	POK "AT1G71270" [Arabidopsis t	1.0	0.339	0.829	5.1e-106
MGI|MGI:1330304	723	Vps52 "vacuolar protein sortin	0.995	0.330	0.329	6.1e-32
RGD|3618	723	Vps52 "vacuolar protein sortin	0.995	0.330	0.329	6.1e-32
UNIPROTKB|Q5TJF0	723	VPS52 "Vacuolar protein sortin	1.0	0.331	0.318	1.7e-31
UNIPROTKB|Q8N1B4	723	VPS52 "Vacuolar protein sortin	1.0	0.331	0.318	1.7e-31
WB|WBGene00007059	702	vps-52 [Caenorhabditis elegans	0.991	0.339	0.264	1.8e-22
UNIPROTKB|G5EFV8	702	vps-52 "Vacuolar protein sorti	0.991	0.339	0.264	1.8e-22
DICTYBASE|DDB_G0293772	838	vps52A "Vps52 / Sac2 family pr	0.975	0.279	0.307	8.8e-22
DICTYBASE|DDB_G0293496	876	vps52B "Vps52 / Sac2 family pr	0.354	0.097	0.305	2e-09
ASPGD|ASPL0000013581	670	vps52 [Emericella nidulans (ta	0.375	0.134	0.304	7.5e-05

TAIR|locus:2032343 POK "AT1G71270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
 Identities = 199/240 (82%), Positives = 222/240 (92%)

Query:     1 MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
             MVFD HLSSLR+AN+KTLWEDDVHPHYVMRRYAEF AS IHLNVEYGDGQL++N+ERLRM
Sbjct:   468 MVFDSHLSSLRDANIKTLWEDDVHPHYVMRRYAEFTASFIHLNVEYGDGQLDINLERLRM 527

Query:    61 AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
             AVD L+ KLAKLFP+PK QIVFLINNYDMTIAVLKEA PEGGKIQ+H+EE+LKSNT+LFV
Sbjct:   528 AVDGLILKLAKLFPRPKQQIVFLINNYDMTIAVLKEAGPEGGKIQMHFEEMLKSNTSLFV 587

Query:   121 EELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT 180
             EELL+EHFSDLIKFVK RASEDSS   E+ IT+AE+EPLVKDF SRWK AIELM KD+IT
Sbjct:   588 EELLVEHFSDLIKFVKNRASEDSSLNPERSITIAEVEPLVKDFGSRWKTAIELMDKDIIT 647

Query:   181 SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSRTF 240
             SFSNFLCGM+ILRAALTQLLLYYTRL+D IK++ GGSALN+DLVSI SIMYEI+KYS+TF
Sbjct:   648 SFSNFLCGMDILRAALTQLLLYYTRLTDCIKKIDGGSALNRDLVSIQSIMYEIRKYSKTF 707

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0009860 "pollen tube growth" evidence=IMP

GO:0000139 "Golgi membrane" evidence=IDA

GO:0012505 "endomembrane system" evidence=IDA

GO:0019953 "sexual reproduction" evidence=IMP

MGI|MGI:1330304 Vps52 "vacuolar protein sorting 52 (yeast)" [Mus musculus (taxid:10090)]

 Score = 358 (131.1 bits), Expect = 6.1e-32, P = 6.1e-32
 Identities = 80/243 (32%), Positives = 140/243 (57%)

Query:     1 MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEY-GDGQLELNMERLR 59
             ++ ++++ S+R+ + + L   D  PHY+ RRYAEF+++L+ +N     +  L+L + +L+
Sbjct:   482 LILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTLQL-LGQLQ 540

Query:    60 MAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALF 119
             + V++ + ++A  F   K Q+VFLINNYDM + VL E + +  K    +++LL + T  F
Sbjct:   541 VEVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEF 600

Query:   120 VEELLLEHFSDLIKFVKTRASEDSSSTSEKPI-TVAEIEPLVKDFASRWKAAIELMHKDV 178
             +EELL   F  L+ FVK   +      +E+     A +  L++ F S WKA++E + +DV
Sbjct:   601 IEELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKASVESLSQDV 660

Query:   179 ITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVA-GGSALNKDLVSISSIMYEIKKYS 237
             + SF+NF  G  I++ ALTQL+  Y R    + +          +L++I  +M E+KK+ 
Sbjct:   661 MRSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARAELINIHHLMVELKKHK 720

Query:   238 RTF 240
               F
Sbjct:   721 PNF 723

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0010668 "ectodermal cell differentiation" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0048611 "embryonic ectodermal digestive tract development" evidence=IMP

RGD|3618 Vps52 "vacuolar protein sorting 52 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 358 (131.1 bits), Expect = 6.1e-32, P = 6.1e-32
 Identities = 80/243 (32%), Positives = 140/243 (57%)

Query:     1 MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEY-GDGQLELNMERLR 59
             ++ ++++ S+R+ + + L   D  PHY+ RRYAEF+++L+ +N     +  L+L + +L+
Sbjct:   482 LILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTLQL-LGQLQ 540

Query:    60 MAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALF 119
             + V++ + ++A  F   K Q+VFLINNYDM + VL E + +  K    +++LL + T  F
Sbjct:   541 VEVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEF 600

Query:   120 VEELLLEHFSDLIKFVKTRASEDSSSTSEKPI-TVAEIEPLVKDFASRWKAAIELMHKDV 178
             +EELL   F  L+ FVK   +      +E+     A +  L++ F S WKA++E + +DV
Sbjct:   601 IEELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKASVESLSQDV 660

Query:   179 ITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVA-GGSALNKDLVSISSIMYEIKKYS 237
             + SF+NF  G  I++ ALTQL+  Y R    + +          +L++I  +M E+KK+ 
Sbjct:   661 MRSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARAELINIHHLMVELKKHK 720

Query:   238 RTF 240
               F
Sbjct:   721 PNF 723

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0010668 "ectodermal cell differentiation" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0048611 "embryonic ectodermal digestive tract development" evidence=ISO

UNIPROTKB|Q5TJF0 VPS52 "Vacuolar protein sorting-associated protein 52 homolog" [Canis lupus familiaris (taxid:9615)]

 Score = 354 (129.7 bits), Expect = 1.7e-31, P = 1.7e-31
 Identities = 77/242 (31%), Positives = 138/242 (57%)

Query:     1 MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
             ++ ++++ S+R+ + + L   D  PHY+ RRYAEF+++L+ +N    + +    + +L++
Sbjct:   482 LILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTVPNERTMQLLGQLQV 541

Query:    61 AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
              V++ + ++A  F   K Q+VFLINNYDM + VL E + +  K    +++LL + T  F+
Sbjct:   542 EVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFI 601

Query:   121 EELLLEHFSDLIKFVKTRASEDSSSTSEKPI-TVAEIEPLVKDFASRWKAAIELMHKDVI 179
             EELL   F  L+ FVK   +      +E+     A +  L++ F S WK+++E + +DV+
Sbjct:   602 EELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKSSVESLSQDVM 661

Query:   180 TSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVA-GGSALNKDLVSISSIMYEIKKYSR 238
              SF+NF  G  I++ ALTQL+  Y R    + +          +L++I  +M E+KK+  
Sbjct:   662 RSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARAELINIHHLMVELKKHKP 721

Query:   239 TF 240
              F
Sbjct:   722 NF 723

GO:0010008 "endosome membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q8N1B4 VPS52 "Vacuolar protein sorting-associated protein 52 homolog" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 1.7e-31, P = 1.7e-31
 Identities = 77/242 (31%), Positives = 138/242 (57%)

Query:     1 MVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRM 60
             ++ ++++ S+R+ + + L   D  PHY+ RRYAEF+++L+ +N    + +    + +L++
Sbjct:   482 LILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTMQLLGQLQV 541

Query:    61 AVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV 120
              V++ + ++A  F   K Q+VFLINNYDM + VL E + +  K    +++LL + T  F+
Sbjct:   542 EVENFVLRVAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFI 601

Query:   121 EELLLEHFSDLIKFVKTRASEDSSSTSEKPI-TVAEIEPLVKDFASRWKAAIELMHKDVI 179
             EELL   F  L+ FVK   +      +E+     A +  L++ F S WK+++E + +DV+
Sbjct:   602 EELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKSSVESLSQDVM 661

Query:   180 TSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVA-GGSALNKDLVSISSIMYEIKKYSR 238
              SF+NF  G  I++ ALTQL+  Y R    + +          +L++I  +M E+KK+  
Sbjct:   662 RSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARAELINIHHLMVELKKHKP 721

Query:   239 TF 240
              F
Sbjct:   722 NF 723

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00007059 vps-52 [Caenorhabditis elegans (taxid:6239)]

 Score = 270 (100.1 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 66/250 (26%), Positives = 129/250 (51%)

Query:     1 MVFDLHLSSLRNANVKTLWED---DVHPHYVMRRYAEFAASLIHLNVEYGDGQ-----LE 52
             +V   H  S+++ ++K L      D  PH+++RRYAE  ++  HL +    G+     +E
Sbjct:   455 LVMSQHYESVKSVDLKKLMHSGSLDARPHFIVRRYAELTSA--HLMIAKASGKEMGAKME 512

Query:    53 LNMERLRMAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELL 112
               +E    +++ LLT+++ +    K++ VFLINNYD+ ++++     +  KI     EL 
Sbjct:   513 AVLENSEDSIEQLLTRMSAMQQTQKNKHVFLINNYDLILSIIDNEESKHTKIYAIVHELE 572

Query:   113 KSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAE-IEPLVKDFASRWKAAI 171
             + +   FVEE+L  H   +IKFV    S      ++  +   + +  +V +F ++W+ A+
Sbjct:   573 QKSIDDFVEEMLEPHIGYMIKFVNECESLIVQGHTQLLVRYNDKVGTVVANFNAKWRPAV 632

Query:   172 ELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKR-VAGGSALNKDLVSISSIM 230
             + ++ + I  F+NF  G  IL+   T+ + Y  R +  +   V   + +   LV++  +M
Sbjct:   633 DSINSECIQLFTNFSLGTTILQTIFTKYVQYINRFTKILSHDVFAKNPVCSQLVNVHQVM 692

Query:   231 YEIKKYSRTF 240
              EIK++   +
Sbjct:   693 LEIKRFKPAY 702

GO:0000938 "GARP complex" evidence=IPI

GO:0000138 "Golgi trans cisterna" evidence=IDA

GO:0005797 "Golgi medial cisterna" evidence=IDA

GO:0017137 "Rab GTPase binding" evidence=IPI

GO:0019905 "syntaxin binding" evidence=IPI

UNIPROTKB|G5EFV8 vps-52 "Vacuolar protein sorting-associated protein 52 homolog" [Caenorhabditis elegans (taxid:6239)]

 Score = 270 (100.1 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 66/250 (26%), Positives = 129/250 (51%)

Query:     1 MVFDLHLSSLRNANVKTLWED---DVHPHYVMRRYAEFAASLIHLNVEYGDGQ-----LE 52
             +V   H  S+++ ++K L      D  PH+++RRYAE  ++  HL +    G+     +E
Sbjct:   455 LVMSQHYESVKSVDLKKLMHSGSLDARPHFIVRRYAELTSA--HLMIAKASGKEMGAKME 512

Query:    53 LNMERLRMAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELL 112
               +E    +++ LLT+++ +    K++ VFLINNYD+ ++++     +  KI     EL 
Sbjct:   513 AVLENSEDSIEQLLTRMSAMQQTQKNKHVFLINNYDLILSIIDNEESKHTKIYAIVHELE 572

Query:   113 KSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAE-IEPLVKDFASRWKAAI 171
             + +   FVEE+L  H   +IKFV    S      ++  +   + +  +V +F ++W+ A+
Sbjct:   573 QKSIDDFVEEMLEPHIGYMIKFVNECESLIVQGHTQLLVRYNDKVGTVVANFNAKWRPAV 632

Query:   172 ELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKR-VAGGSALNKDLVSISSIM 230
             + ++ + I  F+NF  G  IL+   T+ + Y  R +  +   V   + +   LV++  +M
Sbjct:   633 DSINSECIQLFTNFSLGTTILQTIFTKYVQYINRFTKILSHDVFAKNPVCSQLVNVHQVM 692

Query:   231 YEIKKYSRTF 240
              EIK++   +
Sbjct:   693 LEIKRFKPAY 702

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0293772 vps52A "Vps52 / Sac2 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 265 (98.3 bits), Expect = 8.8e-22, P = 8.8e-22
 Identities = 76/247 (30%), Positives = 124/247 (50%)

Query:     2 VFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRMA 61
             VF  ++ SL  A        D  PH   RR++EF +S+  +     + ++   +  LR +
Sbjct:   590 VFKRNIDSLNLAIKMDTPPTDFRPHIYTRRFSEFYSSIAEILSHNEEPRVLAWVAVLRSS 649

Query:    62 VDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEAS-PEGGKIQLHYEELLKSNTALFV 120
             ++ LL   +  F   KS+ +FLI NYD+ I V  E +  +  +  L +  LL     +FV
Sbjct:   650 MERLLLHFSNSFTDIKSKSIFLITNYDVVITVFSENNINQNEEGYLKFLNLLHEQIDIFV 709

Query:   121 EELLLEHFSDLIKFVKTRASEDS-SSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVI 179
             E LL  ++  LI F+K   +E S S+ S   I   ++  L+ +F+ +WK  +  +  +++
Sbjct:   710 ELLLFSYYKSLITFIKD--TEFSCSNVSNYQIDKNQLSMLIGEFSQKWKDILSKIQTEIM 767

Query:   180 TSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSAL----NKDL----VSISSIMY 231
             T+FSNF  G  I +  +TQ LLYY R  +  K+    S+     N  L    + +S+I Y
Sbjct:   768 TNFSNFNLGSSITKKIITQYLLYYKRFEEIYKKFIKQSSTTDGNNNQLRLAFIPVSTITY 827

Query:   232 EIKK-YS 237
             EI K YS
Sbjct:   828 EISKSYS 834

GO:0003674 "molecular_function" evidence=ND

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0005622 "intracellular" evidence=IC

DICTYBASE|DDB_G0293496 vps52B "Vps52 / Sac2 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 106 (42.4 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
 Identities = 26/85 (30%), Positives = 43/85 (50%)

Query:   156 IEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAG 215
             +E ++K F   W++ IE M+  V   F NF  GM+I +  L +L   Y + +  I +   
Sbjct:   791 LEEILKQFYQNWRSGIEEMNVIVTQQFPNFKNGMKIFQMILDKLFNCYKQFTQIILKYFK 850

Query:   216 GSALNKDLVSISSIMYEIKKYSRTF 240
                 +   ++ + I YEIKKY  +F
Sbjct:   851 NLKTSPFYLAETEISYEIKKYYVSF 875

GO:0003674 "molecular_function" evidence=ND

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0005622 "intracellular" evidence=IC

ASPGD|ASPL0000013581 vps52 [Emericella nidulans (taxid:162425)]

 Score = 123 (48.4 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 28/92 (30%), Positives = 50/92 (54%)

Query:    25 PHYVMRRYAEFAASLIHLNVEYGDGQLELN-MERLRMAVDDLLTKLAKLFPKPKSQIVFL 83
             PH++ +R+ +    ++ L+ E GD +   N + RL    D LL KL+++    K +  FL
Sbjct:   574 PHFLTQRFGQLLHGILVLSSEAGDDEPVANSLSRLTSEFDGLLAKLSRIGGDAKRRERFL 633

Query:    84 INNYDMTIAVLKEASPEGGKIQL-HYEELLKS 114
              NNY + + ++ +   +    Q  H+EE+LKS
Sbjct:   634 YNNYSLVLTIISDTKGKLATEQKQHFEEMLKS 665


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      240       240   0.00093  113 3  11 22  0.40    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  168 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.33u 0.13s 23.46t   Elapsed:  00:00:01
  Total cpu time:  23.33u 0.13s 23.46t   Elapsed:  00:00:01
  Start:  Thu May  9 22:24:06 2013   End:  Thu May  9 22:24:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0006896 "Golgi to vacuole transport" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0030029 "actin filament-based process" evidence=IEA

GO:0000938 "GARP complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
pfam04129	511	pfam04129, Vps52, Vps52 / Sac2 family	1e-44

>gnl|CDD|217914 pfam04129, Vps52, Vps52 / Sac2 family

 Score =  156 bits (396), Expect = 1e-44
 Identities = 58/122 (47%), Positives = 80/122 (65%), Gaps = 2/122 (1%)

Query: 1   MVFDLHLSSLRNANVKTLWE-DDVHPHYVMRRYAEFAASLIHLNVEYGDGQ-LELNMERL 58
           +V D+H  SLR A++ TL E  D  PHY+ RRYAEF +S + L V +G+   +E  +ERL
Sbjct: 390 LVMDMHCESLRKADITTLVEKLDTRPHYITRRYAEFLSSFLMLAVTHGNEIDVERLLERL 449

Query: 59  RMAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTAL 118
           +  V+D L ++AK FP  KSQ+VFLINNYD+ + VL E   +  K Q  ++ELL S+T  
Sbjct: 450 QREVEDFLLRMAKCFPTRKSQLVFLINNYDLILGVLMELHLDLSKEQEDFQELLNSSTEN 509

Query: 119 FV 120
           FV
Sbjct: 510 FV 511

Vps52 complexes with Vps53 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events. Length = 511

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG1961	683	consensus Vacuolar sorting protein VPS52/suppresso	100.0
PF04129	508	Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 V	99.95
PF09763	701	Sec3_C: Exocyst complex component Sec3; InterPro:	98.71
PF03081	371	Exo70: Exo70 exocyst complex subunit; InterPro: IP	97.81
PF06419	618	COG6: Conserved oligomeric complex COG6; InterPro:	97.46
KOG2148	867	consensus Exocyst protein Sec3 [Intracellular traf	97.09
KOG2344	623	consensus Exocyst component protein and related pr	96.32
KOG3758	655	consensus Uncharacterized conserved protein [Funct	93.72

>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=100.00  E-value=1.7e-69  Score=510.07  Aligned_cols=229  Identities=55%  Similarity=0.920  Sum_probs=221.1

Q ss_pred             ChhHHHHHHHhhccccccCC-CCCCchhHHHhHHHHHHHHHHhhhhcCChh-HHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 036632            1 MVFDLHLSSLRNANVKTLWE-DDVHPHYVMRRYAEFAASLIHLNVEYGDGQ-LELNMERLRMAVDDLLTKLAKLFPKPKS   78 (240)
Q Consensus         1 ~v~d~~~~Slk~~~~~~l~~-~~~~PH~itrRyaef~~sl~~L~~~~~~~~-~~~~L~rLr~e~~~ll~r~s~~~~~~~~   78 (240)
                      .|||+||+|||+|++++++. .+++|||||||||||++|++.|+.+.|+++ +..+++||+.+++++++||++.++++|+
T Consensus       453 ~V~d~h~eSlR~~di~~~~~~~d~rPHyitrRyAEf~ss~~~l~v~~~~~~~~~~ll~~l~~~ve~fl~rmak~~~~~K~  532 (683)
T KOG1961|consen  453 LVMDMHCESLRKADITTLWEKLDTRPHYITRRYAEFLSSFLMLNVTYGNEQDVERLLERLQMEVESFLLRMAKLFPTRKQ  532 (683)
T ss_pred             HHHHHHHHHHHhcChhhcccccCCCchHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            48999999999999999986 899999999999999999999999999988 7889999999999999999999999999


Q ss_pred             ceeeehhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhcCCCCCCCCcccHHhHHH
Q 036632           79 QIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEP  158 (240)
Q Consensus        79 ~~iFLiNNYdlIl~il~e~~~~~~~~~~~f~~ll~~~~~~fVe~~L~~~F~~li~fVk~~e~~~~~~~~~~~i~~~~v~~  158 (240)
                      |++|||||||||++||+++.++++++..+|++++++.++.||||.|.|||||||.||+++|..           ..++++
T Consensus       533 q~vFLiNNYdlil~vL~e~~~~~~k~~~~f~e~ln~~~~~fveell~~hf~~~i~fvk~~e~~-----------~~~~~~  601 (683)
T KOG1961|consen  533 QLVFLINNYDLILGVLMEAEPDLSKEQEHFQELLNSNTSNFVEELLVPHFGDLIKFVKERETA-----------ENRVET  601 (683)
T ss_pred             ceeeeeccHHHHHHHHHhhccccchHHHHHHHHHHhhHHHHHHHhccCCcCchHHHHHHHhhh-----------hhHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999972           128999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccCCchHHHHHHHhhccc
Q 036632          159 LVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNKDLVSISSIMYEIKKYSR  238 (240)
Q Consensus       159 i~~~F~~~Wk~~ie~i~~ev~~~F~nf~~g~~ILq~~ltqll~yY~rF~~i~~~~~~~~~~~~~lv~i~~Im~EIkk~~~  238 (240)
                      +|++|+++||.++|.||++|+++|+||.||+.|||+++|||++|||||++|+++..++.|+|++|||+|+||+|||||||
T Consensus       602 LV~~F~~~wk~ave~~~~d~i~~f~nf~~g~~ilq~~~t~l~qyy~rf~~~l~~~~~~~~~~~~lvnih~vm~eikk~k~  681 (683)
T KOG1961|consen  602 LVADFGSNWKTAVESLNKDVITSFTNFLCGTDILQAALTQLVQYYHRFHKCLSKPDGGSPARAQLVNIHSVMVEIKKYKP  681 (683)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHcCccccchHHHHHHhHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999999999999999999999987667999999999999999999999


Q ss_pred             CC
Q 036632          239 TF  240 (240)
Q Consensus       239 ~~  240 (240)
                      +|
T Consensus       682 ~~  683 (683)
T KOG1961|consen  682 NF  683 (683)
T ss_pred             CC
Confidence            98

>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []

Probab=99.95  E-value=1.9e-28  Score=235.70  Aligned_cols=119  Identities=45%  Similarity=0.694  Sum_probs=116.0

Q ss_pred             hhHHHHHHHhhccccccCCCCCCchhHHHhHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhCCCCcccee
Q 036632            2 VFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGDGQLELNMERLRMAVDDLLTKLAKLFPKPKSQIV   81 (240)
Q Consensus         2 v~d~~~~Slk~~~~~~l~~~~~~PH~itrRyaef~~sl~~L~~~~~~~~~~~~L~rLr~e~~~ll~r~s~~~~~~~~~~i   81 (240)
                      |||+||+|||+++++++++.+.+||++|||||||++||++|+.+++++++..++.|||.++++||+|+|++++++++|++
T Consensus       390 i~d~nieSlk~~~~~~~~~~~~~PH~itrRyaef~~sll~L~~~~~~~~~~~~l~~L~~~~~~ll~~~s~~~~~~k~~~i  469 (508)
T PF04129_consen  390 IMDANIESLKKADPKKLGSIDTRPHYITRRYAEFLSSLLKLSSEHPDEQLEPSLNRLRREVEDLLTRLSKEFKDRKEREI  469 (508)
T ss_pred             HHHHHHHHHHhcCccccccCccCChHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccce
Confidence            79999999999999999989999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eehhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHH
Q 036632           82 FLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFV  120 (240)
Q Consensus        82 FLiNNYdlIl~il~e~~~~~~~~~~~f~~ll~~~~~~fV  120 (240)
                      ||+||||+|+++|++++.+.+++...|+++|++++++||
T Consensus       470 FLiNNY~lIl~iL~~~~~~~~~e~~~~~~~l~~~~~~f~  508 (508)
T PF04129_consen  470 FLINNYDLILSILSERTGKLSKEQKHFFELLQARTEEFV  508 (508)
T ss_pred             ehHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhcC
Confidence            999999999999999988889999999999999999997

>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8

Probab=98.71  E-value=1.7e-06  Score=86.81  Aligned_cols=210  Identities=19%  Similarity=0.227  Sum_probs=161.1

Q ss_pred             hHHHHHHHhhccccccCCCCCCchhHHHhHHHHHHHHHHhhhhcCC--h---hHHHHHHHHHHHHHHHHHHHHhhCC---
Q 036632            3 FDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYGD--G---QLELNMERLRMAVDDLLTKLAKLFP---   74 (240)
Q Consensus         3 ~d~~~~Slk~~~~~~l~~~~~~PH~itrRyaef~~sl~~L~~~~~~--~---~~~~~L~rLr~e~~~ll~r~s~~~~---   74 (240)
                      +|.+|.+|.++.+..-+.  .+.-+.+++|..|+..+-..-.+...  +   .++.+-.+|-..+...|.+.+..-+   
T Consensus       458 v~~Qi~~ie~~k~~~k~r--~GVl~~i~~fp~f~~~~E~~~~~~~~~~~~r~~vd~aY~kl~~a~~~~l~~~a~~~~~~~  535 (701)
T PF09763_consen  458 VDEQIKSIEETKVSKKKR--KGVLPFIKKFPEFVKRVESMFSGAERAREDRSLVDKAYEKLVRAMFDSLERIAKLSPKNS  535 (701)
T ss_pred             HHHHHHHHHHhccccCCC--CccchHHHHHHHHHHHHHHHHccccccchHHHHHHHHHHHHHHHHHHHHHHhcccCcccc
Confidence            577888888866654221  25566779999999998887766544  2   3677899999999999999997655   


Q ss_pred             --------CCccceeeehhhHHHHHHHHhhcCC-CC-chhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhcCCC
Q 036632           75 --------KPKSQIVFLINNYDMTIAVLKEASP-EG-GKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSS  144 (240)
Q Consensus        75 --------~~~~~~iFLiNNYdlIl~il~e~~~-~~-~~~~~~f~~ll~~~~~~fVe~~L~~~F~~li~fVk~~e~~~~~  144 (240)
                              .+....|.++-||+.....|...+. +. .+..+.=.+.++...+.||...|...||.|+.|+...|....+
T Consensus       536 ~~~~~~dk~~~~~~v~~leN~~~~~e~l~~~~~~~~l~~~~~~A~~~~~~~~~~Y~~~~l~r~~~kL~~F~~gve~l~~~  615 (701)
T PF09763_consen  536 GSQDPEDKEKLNYHVVLLENYHHFYEELSQLKINSVLEEFRKEAKQIYDEHLEAYVTFLLRRPFGKLLDFFEGVEALLQT  615 (701)
T ss_pred             cccCccccccchhhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhc
Confidence                    2467899999999999999999875 11 1223455677888999999999999999999999999986443


Q ss_pred             -CCCCC----cccHHhHHHHHHHH-HHHHHHHHHHHHHHHHhhc--------cCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 036632          145 -STSEK----PITVAEIEPLVKDF-ASRWKAAIELMHKDVITSF--------SNFLCGMEILRAALTQLLLYYTRLSDSI  210 (240)
Q Consensus       145 -~~~~~----~i~~~~v~~i~~~F-~~~Wk~~ie~i~~ev~~~F--------~nf~~g~~ILq~~ltqll~yY~rF~~i~  210 (240)
                       +..+.    ..+...+..|+..| +..=|++|+.+++.|.++|        .+-..-..+.+.+=++++.+|.||.+++
T Consensus       616 ~~~~ei~~~~~ySk~~l~kvl~~y~~kev~k~i~~l~krveKHf~~~~~~~~~~~~Ll~~vW~~~q~~~i~~~~~l~~li  695 (701)
T PF09763_consen  616 VSPEEISYQAAYSKQELKKVLKSYPSKEVRKGIEALYKRVEKHFSRDADDPSFEEDLLQVVWSAMQEEFIRQYERLETLI  695 (701)
T ss_pred             cCchhcccchhccHHHHHHHHHhCChHHHHHHHHHHHHHHHHHcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11121    22347899999996 5678999999999999999        2333345566777788999999999999


Q ss_pred             hhhc
Q 036632          211 KRVA  214 (240)
Q Consensus       211 ~~~~  214 (240)
                      .+..
T Consensus       696 ~~~Y  699 (701)
T PF09763_consen  696 QKCY  699 (701)
T ss_pred             HHhC
Confidence            9854

This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.

>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex

Probab=97.81  E-value=0.00023  Score=65.80  Aligned_cols=199  Identities=18%  Similarity=0.240  Sum_probs=113.0

Q ss_pred             HHHHhh-ccccccCCCCCCchhHHHhHHHHHHHHHH-------hhhhcCC--------------------hhHHHHHHHH
Q 036632            7 LSSLRN-ANVKTLWEDDVHPHYVMRRYAEFAASLIH-------LNVEYGD--------------------GQLELNMERL   58 (240)
Q Consensus         7 ~~Slk~-~~~~~l~~~~~~PH~itrRyaef~~sl~~-------L~~~~~~--------------------~~~~~~L~rL   58 (240)
                      .++++. ++...-.+.|...|++|+--..++..|..       +-...++                    ..+...+.++
T Consensus       121 ~~~i~~~~~~~~~~p~dg~Vh~lT~~vm~yl~~L~~y~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~i  200 (371)
T PF03081_consen  121 EESIKNDSDSSSSVPSDGGVHPLTSYVMNYLKRLAEYRDTLESILQSDGDGNWLSESGPPSESSSSTDSQSSLSSYIADI  200 (371)
T ss_dssp             HHHHHHHHTTCGCS-TTS---HHHHHHHHHHHHHHCTHHHHHHCCCTT-GGGGS-SS--GGGS---CCHHHHHHHHHHHH
T ss_pred             HHHHHhhccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCccchHHHHHHHH
Confidence            444554 23333335788999988765555554443       2222111                    1123356666


Q ss_pred             HHHHHHHHHHHHhhCCCCccceeeehhhHHHHHHHHhhcCCCCch-hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 036632           59 RMAVDDLLTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASPEGGK-IQLHYEELLKSNTALFVEELLLEHFSDLIKFVKT  137 (240)
Q Consensus        59 r~e~~~ll~r~s~~~~~~~~~~iFLiNNYdlIl~il~e~~~~~~~-~~~~f~~ll~~~~~~fVe~~L~~~F~~li~fVk~  137 (240)
                      =...+.-|.+-|+..+++..+.+||+|||.+|+..+.....  +. .-..+.+.+.+.++.|+..-+..-.+.++++...
T Consensus       201 i~~L~~~Le~ks~~y~d~~l~~iFLlNN~~yI~~~~~~s~l--~~~lg~~~~~~~~~~~~~~~~~Y~~~sW~~v~~~L~~  278 (371)
T PF03081_consen  201 ISALESNLEAKSKSYKDPALRYIFLLNNYHYILKKLKRSEL--KDLLGDDWEQRLSSKIEQYIKSYLRSSWGPVLSCLSD  278 (371)
T ss_dssp             HHHHHHHHHHHHCCHCTHHHHHHHHHHHHHHHHCCCCTSHH--HHCCTTCHHHHHHHHHHHHHHHHHCHHHHHHHCTCCH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhhcch--hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66666666677888999999999999999999998866310  00 0012334444455555554444445556655555


Q ss_pred             hhhcCCCCCCCCcccHHhHHHHHHHHHHHHHHHHHHHHHHHHh-hccCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036632          138 RASEDSSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT-SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRV  213 (240)
Q Consensus       138 ~e~~~~~~~~~~~i~~~~v~~i~~~F~~~Wk~~ie~i~~ev~~-~F~nf~~g~~ILq~~ltqll~yY~rF~~i~~~~  213 (240)
                      ....  .+......+...+....+.|+..+    |++.+.-.. ..++-....++-+.+...++--|++|.+=....
T Consensus       279 ~~~~--~~~~~~~~~~~~~ke~f~~Fn~~f----ee~~~~q~~~~vpD~~LR~~Lr~~i~~~v~p~Y~~F~~~~~~~  349 (371)
T PF03081_consen  279 DSSS--SGGKLSSKERELLKEKFKKFNSAF----EEIYKAQKTWKVPDPELREELRREIKEKVVPAYRRFYERYRNS  349 (371)
T ss_dssp             HCC---T-SSS-HHHHHHHHHHHHHHHHHH----HHHHHHHTT---S-HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             hhcc--ccCCCCCccHHHHHHHHHHHHHHH----HHHHHcCcceecCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4110  111111212356778888887754    455444333 456777788888888899999999999866553

First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.

>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation

Probab=97.46  E-value=0.014  Score=58.17  Aligned_cols=209  Identities=10%  Similarity=0.106  Sum_probs=131.5

Q ss_pred             hHHHHHHHhhccccccCCCCCCchhHHHhHHHHHHHHHHhhhhc--CC------hhHHHHHHHHHHHHHHHHHHHHhhCC
Q 036632            3 FDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEY--GD------GQLELNMERLRMAVDDLLTKLAKLFP   74 (240)
Q Consensus         3 ~d~~~~Slk~~~~~~l~~~~~~PH~itrRyaef~~sl~~L~~~~--~~------~~~~~~L~rLr~e~~~ll~r~s~~~~   74 (240)
                      ++.|+..++...+ ...+.|..|=.....|...+..|+...+..  ++      .....-|+..=+-+.....++|..++
T Consensus       376 l~~~~~~l~~~~~-~~~~~DL~PP~~l~d~l~~L~~il~~~~~s~~~~~~~~~~~~~~~Il~~~idpll~~c~~~a~~L~  454 (618)
T PF06419_consen  376 LRDHVAKLLRSAP-EPPPADLSPPEWLIDFLSLLREILDVYDSSLSPDDDRENDNDFKPILDEPIDPLLQMCQKSASPLA  454 (618)
T ss_pred             HHHHHHHHHhhCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCccchhhhhHHHHHHHHHhHHHHHHHHHHhhccC
Confidence            4556666665512 223567888888888988888888875432  21      22333455455555556668788888


Q ss_pred             CCccceeeehhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHhhh---hhcCCCCC
Q 036632           75 KPKSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLE-----HFSDLIKFVKTR---ASEDSSST  146 (240)
Q Consensus        75 ~~~~~~iFLiNNYdlIl~il~e~~~~~~~~~~~f~~ll~~~~~~fVe~~L~~-----~F~~li~fVk~~---e~~~~~~~  146 (240)
                      .+..+.||+||.+|+|.+.|+-.... .+-.+..+....+++..-|+++...     ..+++++-+.-.   ....++-.
T Consensus       455 ~~~~~~if~iNCl~~i~s~L~~~~~~-~~~~e~L~~~id~~~~~Lv~~Q~~~lL~~sGL~~~~~~l~~i~~~~~~~~pls  533 (618)
T PF06419_consen  455 PKDDRAIFMINCLDLIQSTLSPFEFT-SERVEELQDQIDAHVDTLVEEQASFLLERSGLGDLYNALNMIFFDYDMYGPLS  533 (618)
T ss_pred             ChhhhHHHHHHhHHHHHHHccChHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHhhccCCcccCCcc
Confidence            76667999999999999999875421 2334455555666666666665553     222333333311   11111112


Q ss_pred             CCCcccHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036632          147 SEKPITVAEIEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVA  214 (240)
Q Consensus       147 ~~~~i~~~~v~~i~~~F~~~Wk~~ie~i~~ev~~~F~nf~~g~~ILq~~ltqll~yY~rF~~i~~~~~  214 (240)
                      ..+..+.+.+..+...|..-=-++.-.+-.++ ..-.+=....+|-+.++..+...|.+|.+++..+.
T Consensus       534 ~~p~~~~~~l~~a~~kld~fL~sa~~d~~~~L-~~L~Sp~l~~~I~~~a~~~f~~~Y~~v~~~v~d~~  600 (618)
T PF06419_consen  534 ENPGMDPDSLSNALQKLDDFLPSALTDAQPNL-FKLQSPKLRDDIRERAFERFCKAYEKVYEAVMDPD  600 (618)
T ss_pred             cCccCCHHHHHHHHHHHHHHHcccchhhhHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence            23444566777777777654444443343443 66677777899999999999999999999998854

>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.088  Score=52.42  Aligned_cols=208  Identities=16%  Similarity=0.169  Sum_probs=135.9

Q ss_pred             hHHHHHHHhhccccccCCCCCCchhHHHhHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHhhCCCCcccee
Q 036632            3 FDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFAASLIHLNVEYG-DGQLELNMERLRMAVDDLLTKLAKLFPKPKSQIV   81 (240)
Q Consensus         3 ~d~~~~Slk~~~~~~l~~~~~~PH~itrRyaef~~sl~~L~~~~~-~~~~~~~L~rLr~e~~~ll~r~s~~~~~~~~~~i   81 (240)
                      ++..|.+++.+...+-  .-.+..|.+-||++|..-.-.+-..+. .+.++..-..|-..|..-+.+.|++-++.+.. |
T Consensus       624 iq~qc~qieevki~kk--sk~gILPyv~rFenfa~raE~if~naerRtdlekaYtklvravfvgiek~Aqq~pKtp~d-V  700 (867)
T KOG2148|consen  624 IQNQCSQIEEVKIAKK--SKIGILPYVFRFENFARRAEIIFENAERRTDLEKAYTKLVRAVFVGIEKIAQQDPKTPAD-V  700 (867)
T ss_pred             HHHHHHHHHHHHHHHh--ccccccccHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-H
Confidence            4566777766555331  112466778899999887766665443 34667766677777777788999998864444 6


Q ss_pred             eehhhHHHHHHHHhhcCCCCchhh--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhcCCCCCCCCcc------cH
Q 036632           82 FLINNYDMTIAVLKEASPEGGKIQ--LHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPI------TV  153 (240)
Q Consensus        82 FLiNNYdlIl~il~e~~~~~~~~~--~~f~~ll~~~~~~fVe~~L~~~F~~li~fVk~~e~~~~~~~~~~~i------~~  153 (240)
                      -+..||+.+...|++.+... -++  ..=.++.......||-+-+......+-.|....+.....|-.+..|      +.
T Consensus       701 v~mENyh~~y~tLs~Lkis~-lda~kkeaka~~~dhl~ayV~~~~GrPLekln~Ffe~v~~~vaqGirpeeiSYQ~aFsk  779 (867)
T KOG2148|consen  701 VLMENYHHFYATLSDLKISC-LDAAKKEAKALYADHLAAYVKESMGRPLEKLNTFFEGVNNKVAQGIRPEEISYQLAFSK  779 (867)
T ss_pred             HHHhhHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhhHHHHhcCCChhhhhHHHHhhH
Confidence            68899999999999976422 222  2234566677778877766544444444443332211112122222      23


Q ss_pred             HhHHHHHHHHHHH-HHHHHHHHHHHHHhhc-cCcccHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036632          154 AEIEPLVKDFASR-WKAAIELMHKDVITSF-SNFLCGMEILRAALTQLLLYYTRLSDSIKRVA  214 (240)
Q Consensus       154 ~~v~~i~~~F~~~-Wk~~ie~i~~ev~~~F-~nf~~g~~ILq~~ltqll~yY~rF~~i~~~~~  214 (240)
                      .++.+++..|-.+ =|++|+.+-+-|-+.. .+-..-.-+-...=.+++.-|.-|.+++.+..
T Consensus       780 ~elrkvi~qypgkEVkKglenlYKKveKnL~aeenLLqvvW~~mqeeFi~qy~~f~~lIakcY  842 (867)
T KOG2148|consen  780 QELRKVIKQYPGKEVKKGLENLYKKVEKNLLAEENLLQVVWHKMQEEFIDQYESFEQLIAKCY  842 (867)
T ss_pred             HHHHHHHHHcchhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5677888888877 9999999999999874 33333333334555789999999999999864

>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.32  E-value=0.39  Score=48.16  Aligned_cols=182  Identities=15%  Similarity=0.185  Sum_probs=117.8

Q ss_pred             CCCCCchhHHHhHHHHHHHHHH-------hhhhc---------------CChhHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 036632           20 EDDVHPHYVMRRYAEFAASLIH-------LNVEY---------------GDGQLELNMERLRMAVDDLLTKLAKLFPKPK   77 (240)
Q Consensus        20 ~~~~~PH~itrRyaef~~sl~~-------L~~~~---------------~~~~~~~~L~rLr~e~~~ll~r~s~~~~~~~   77 (240)
                      +.+.+.|++||=--.|+..+..       +-.+.               .+.++...+.++=...+.=|..=|+.-+|..
T Consensus       381 v~gG~VHpLTryvmnyl~~L~dy~~tL~~il~~~~~~~~~~~~~~~~~~~~s~l~~~~~~ii~~L~~nLd~Ks~~Y~D~a  460 (623)
T KOG2344|consen  381 VPGGGVHPLTRYVMNYLNFLADYKDTLEQLLMEDPVDTSLPKSESEDESSNSLLAVHIARIILALECNLDTKSKLYKDPA  460 (623)
T ss_pred             CCCCCcChhHHHHHHHHHHHHHHHHHHHHHHhccccccccCcccccccccccHHHHHHHHHHHHHHhhhHHHHhhccchh
Confidence            4567889988855555544432       22221               1123444566666666655666688889999


Q ss_pred             cceeeehhhHHHHHHHHhhcCCC--CchhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhcCCCCCCCCcccHHh
Q 036632           78 SQIVFLINNYDMTIAVLKEASPE--GGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAE  155 (240)
Q Consensus        78 ~~~iFLiNNYdlIl~il~e~~~~--~~~~~~~f~~ll~~~~~~fVe~~L~~~F~~li~fVk~~e~~~~~~~~~~~i~~~~  155 (240)
                      .+.+||.||+.+|+..++.....  -|+   -+-.........|.....+.-.|.+.+...+.-.. .++    ..+...
T Consensus       461 L~~lFlmNN~~yiv~kvkss~L~~llGd---~wl~kh~~~~~qy~~~Y~r~sW~~vl~~L~~~~s~-~~~----~~~~~~  532 (623)
T KOG2344|consen  461 LSYLFLMNNLHYIVQKVKSSELRLLLGD---DWLRKHEEKLRQYATSYERESWGKVLSLLTDEGSS-SGG----KKSKEV  532 (623)
T ss_pred             hHHHHHHhhHHHHHHHHhcchHHHHhch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-ccc----ccCHHH
Confidence            99999999999999988842110  022   22233334444555555555667777777665521 111    245567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-hccCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036632          156 IEPLVKDFASRWKAAIELMHKDVIT-SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRV  213 (240)
Q Consensus       156 v~~i~~~F~~~Wk~~ie~i~~ev~~-~F~nf~~g~~ILq~~ltqll~yY~rF~~i~~~~  213 (240)
                      ++.-.+.|+.    ..|++++--.+ ..++-+...+|-..+-..++--|.+|.+-.+..
T Consensus       533 ~Kerfk~FN~----~FeEv~k~Qs~wvV~D~~Lr~eLk~si~~~v~P~Yr~F~~r~~~~  587 (623)
T KOG2344|consen  533 LKERFKLFNE----QFEEVYKKQSQWVVPDPKLREELKISISEKVVPAYRSFYGRYRNS  587 (623)
T ss_pred             HHHHHHHHHH----HHHHHHHhhCceecccHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            7888888876    46777776666 677888889999999999999999999887643

>KOG3758 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.72  E-value=8.3  Score=38.55  Aligned_cols=195  Identities=15%  Similarity=0.196  Sum_probs=105.1

Q ss_pred             hHHHHHHHhhccccccC-CCCCCchhHHHhHHHHHHHHHHhhhh--cCC--h--hHHHHHHHHHHHHHHHHHHHH-hhCC
Q 036632            3 FDLHLSSLRNANVKTLW-EDDVHPHYVMRRYAEFAASLIHLNVE--YGD--G--QLELNMERLRMAVDDLLTKLA-KLFP   74 (240)
Q Consensus         3 ~d~~~~Slk~~~~~~l~-~~~~~PH~itrRyaef~~sl~~L~~~--~~~--~--~~~~~L~rLr~e~~~ll~r~s-~~~~   74 (240)
                      .+.|...+-..   .++ +.|.-|-+-.++|-.++.++..+...  .++  +  +....+..+=+-+.......+ ..+|
T Consensus       409 l~~~~~~l~~~---~l~p~~DLlPpp~v~~~l~ll~ei~~~~~a~~~~~d~~~~df~~l~s~vldpilq~c~~sae~~lp  485 (655)
T KOG3758|consen  409 LEDHVKKLMRK---ELSPPSDLLPPPAVREYLNLLVEIFEIYEASHTAEDGEQLDFKLLLSCVLDPILQMCQKSAEAHLP  485 (655)
T ss_pred             HHHHHHHHHHh---cCCCccccCCCHHHHHHHHHHHHHHHHhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            34455544433   333 34899999999999999999995542  121  1  122222333233333444555 5677


Q ss_pred             CC-ccceeeehhhHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHhhhhhcCCCCCCC
Q 036632           75 KP-KSQIVFLINNYDMTIAVLKEASPEGGKIQLHYEELLKSNTALFVEELLLE-----HFSDLIKFVKTRASEDSSSTSE  148 (240)
Q Consensus        75 ~~-~~~~iFLiNNYdlIl~il~e~~~~~~~~~~~f~~ll~~~~~~fVe~~L~~-----~F~~li~fVk~~e~~~~~~~~~  148 (240)
                      ++ +...+|+||-.|+|-+-+..... -.+-.+..+.....+..-.|-++-+.     ..+++.+-|+..-+.+......
T Consensus       486 ~~d~~~~if~iNcL~~iks~l~~~e~-~~~~~e~lq~~ie~~~d~L~t~q~s~ll~~~GLs~~~q~~~~~~p~~~~ls~~  564 (655)
T KOG3758|consen  486 TSDKGSLIFMINCLDLIKSRLARYEF-LDERVEMLQAKIEAYLDTLVTLQVSFLLENTGLSDLYQKFNMITPEDSVLSLD  564 (655)
T ss_pred             CcccccceehhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHhcCcchhhhhcc
Confidence            33 33369999999999998877531 01112333333444444444333332     4456666666665543321111


Q ss_pred             CcccHHhHHHHHHHHHHHHHHHHHHHHHHH----------HhhccCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036632          149 KPITVAEIEPLVKDFASRWKAAIELMHKDV----------ITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKR  212 (240)
Q Consensus       149 ~~i~~~~v~~i~~~F~~~Wk~~ie~i~~ev----------~~~F~nf~~g~~ILq~~ltqll~yY~rF~~i~~~  212 (240)
                      +...           ...|+.+|..+-.=+          .+.-..-.-..+|.++....++.-|.-+.+.+-.
T Consensus       565 ~~l~-----------s~~~~~~i~~fd~~l~~~~~~~lpq~q~l~sp~~r~~i~kr~~~~~~~aY~~i~~al~~  627 (655)
T KOG3758|consen  565 PDLE-----------SALLDEAIVKFDMFLHAPLNLTLPQLQQLTSPMVRDEICKRSAKKFVLAYEIIYKALIN  627 (655)
T ss_pred             cccc-----------HHHHHHHHHHHHHHhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            1111           234444444444311          1122222335678888888888888888877755

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-08
 Identities = 27/252 (10%), Positives = 75/252 (29%), Gaps = 46/252 (18%)

Query: 5   LHLSSLRNANVKTLWEDDVHPHYV-MRRYAEFAASLIHLN-----VEYGDGQLELNMERL 58
           + L    +  V+   +  +   ++ ++        L  L      ++        +   +
Sbjct: 166 VALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 59  RMAVDDLLTKLAKLF---PKPKSQIVF-------LINNYDMTIAVL------KEASPEGG 102
           ++ +  +  +L +L    P     +V          N ++++  +L      +       
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 103 KIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSE-KPITVAEIEPLVK 161
               H    L  ++     + +        K++  R  +         P  ++ I   ++
Sbjct: 284 ATTTHIS--LDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 162 DFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGSALNK 221
           D  + W     +    + T   + L    +L  A  +    + RL  S+           
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSL---NVLEPAEYR--KMFDRL--SV--------FPP 383

Query: 222 DLVSISSIMYEI 233
               I +I+  +
Sbjct: 384 S-AHIPTILLSL 394

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 5/137 (3%)

Query: 100 EGGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEIEPL 159
           E G+ Q  Y+++L      FV+    +   D+ K + +   E+          V+    L
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS--KEEIDHIIMSKDAVSGTLRL 67

Query: 160 VKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGS-A 218
                S+ +  ++   ++V+     FL  M  ++    Q  +      +   R+   +  
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 219 LNKDLVSISSIMYEIKK 235
             K  VS      ++++
Sbjct: 126 FAKYNVSRLQPYLKLRQ 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
2pft_A	571	Exocytosis protein; helix-turn-helix, endocytosis-	97.58
2b1e_A	564	Exocyst complex component EXO70; tethering complex	96.99

>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}

Probab=97.58  E-value=0.0011  Score=63.77  Aligned_cols=197  Identities=13%  Similarity=0.135  Sum_probs=110.8

Q ss_pred             HHHHhhcc-ccccCCCCCCchhHHHhHHHHHHHHHH-------hhhhcC-------------ChhHHHHHHHHHHHHHHH
Q 036632            7 LSSLRNAN-VKTLWEDDVHPHYVMRRYAEFAASLIH-------LNVEYG-------------DGQLELNMERLRMAVDDL   65 (240)
Q Consensus         7 ~~Slk~~~-~~~l~~~~~~PH~itrRyaef~~sl~~-------L~~~~~-------------~~~~~~~L~rLr~e~~~l   65 (240)
                      .++|++-. .+..-+.|..+|++|+--..++..|+.       +-...+             ...+...+.++=...+.-
T Consensus       316 ~~~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~~y~~~l~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~  395 (571)
T 2pft_A          316 ADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQETSSSATSYSSEFSKRLLSTYICKVLGNLQLN  395 (571)
T ss_dssp             HHHHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHHHTHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccCCCCCCCCccchHHHHHHHHHHHHHhhHHHHHHHHhccCCCcccccCCCCCcccHHHHHHHHHHHHHHHH
Confidence            45555421 222234589999998644444333322       211110             012333566665556655


Q ss_pred             HHHHHhhCCCCccceeeehhhHHHHHHHHhhcCC-----C-CchhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhh
Q 036632           66 LTKLAKLFPKPKSQIVFLINNYDMTIAVLKEASP-----E-GGKIQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRA  139 (240)
Q Consensus        66 l~r~s~~~~~~~~~~iFLiNNYdlIl~il~e~~~-----~-~~~~~~~f~~ll~~~~~~fVe~~L~~~F~~li~fVk~~e  139 (240)
                      |..-|+.++++..+.+||+||+.+|++.++....     + +..-...++...+.+...|     ..-.+.+.+.+.+..
T Consensus       396 Le~ksk~y~d~~l~~iFLmNN~~yI~~~v~~s~l~~llg~~~~~~~~~~~~~i~~~~~~Y-----~~sW~~v~~~L~~~~  470 (571)
T 2pft_A          396 LLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQQIQTY-----QRSWLKVTDYIAEKN  470 (571)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHTTTTTSTHHHHHHTTCTTHHHHHHHHHHHHHHHH-----HGGGHHHHTTTSGGG
T ss_pred             HHHHHhhCCchHHHHHHHHhhHHHHHHHHhccchHHHhCcchhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcc
Confidence            6666888999999999999999999998865321     0 0111223444444444444     345555555554432


Q ss_pred             hcC-CCCCCCCcccHHhHHHHHHHHHHHHHHHHHHHHHHHHh-hccCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036632          140 SED-SSSTSEKPITVAEIEPLVKDFASRWKAAIELMHKDVIT-SFSNFLCGMEILRAALTQLLLYYTRLSDSIKR  212 (240)
Q Consensus       140 ~~~-~~~~~~~~i~~~~v~~i~~~F~~~Wk~~ie~i~~ev~~-~F~nf~~g~~ILq~~ltqll~yY~rF~~i~~~  212 (240)
                      ... .++..-+..+.+.++.-.+.|+.    ++|++.+.... ..++=....++-+.+...++--|.+|.+-...
T Consensus       471 ~~~~~~g~~ls~~~r~~iKe~fk~Fn~----~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~  541 (571)
T 2pft_A          471 LPVFQPGVKLRDKERQMIKERFKGFND----GLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGS  541 (571)
T ss_dssp             SCSSCCCSCCCHHHHHHHHHHHHHHHH----HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCcCCCCCCcCcccHHHHHHHHHHHHH----HHHHHHHhCCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            110 01111111123567777778876    66777666544 33555566677677777888899999877665

>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A

Probab=96.99  E-value=0.055  Score=51.97  Aligned_cols=128  Identities=13%  Similarity=0.171  Sum_probs=77.0

Q ss_pred             ccceeeehhhHHHHHHHHhhcCCCCch-hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhcCCCCCCCCcccHHh
Q 036632           77 KSQIVFLINNYDMTIAVLKEASPEGGK-IQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAE  155 (240)
Q Consensus        77 ~~~~iFLiNNYdlIl~il~e~~~~~~~-~~~~f~~ll~~~~~~fVe~~L~~~F~~li~fVk~~e~~~~~~~~~~~i~~~~  155 (240)
                      ....+||+||+.+|+..+.....  +. .-..+.+.+.+..+.|. ..+....+.+.+...+....+.++.  ...+.+.
T Consensus       411 ~~l~~FllNN~~yI~~~v~~SeL--~~lLg~~~~~~~~~~~~~~~-~y~~~sW~~v~~~L~~~~~~~~~~k--s~~~k~~  485 (564)
T 2b1e_A          411 QRIGFFILMNLTLVEQIVEKSEL--NLMLAGEGHSRLERLKKRYI-SYMVSDWRDLTANLMDSVFIDSSGK--KSKDKEQ  485 (564)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTH--HHHTTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSS--CCCCHHH
T ss_pred             HHHHHHHHHhHHHHHHHHhhhhh--HhHhcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccCCCCCC--ccccHHH
Confidence            34457999999999999865321  11 01123334445555553 4445667777777776543332221  2334466


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-hccCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036632          156 IEPLVKDFASRWKAAIELMHKDVIT-SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRV  213 (240)
Q Consensus       156 v~~i~~~F~~~Wk~~ie~i~~ev~~-~F~nf~~g~~ILq~~ltqll~yY~rF~~i~~~~  213 (240)
                      ++.-.+.|+.    ++|++.+.-.+ ..++-....++=+.+...++--|.+|.+-.+..
T Consensus       486 iKe~fk~FN~----~Fee~~~~q~~w~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~~  540 (564)
T 2b1e_A          486 IKEKFRKFNE----GFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDS  540 (564)
T ss_dssp             HHHHHHHHHH----HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHH----HHHHHHHhcCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            7777888876    56666665433 344555556666666677778899998776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d2b7ma1	551	Exocyst complex component EXO70 {Baker's yeast (Sa	96.46

>d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO70
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.023  Score=52.13  Aligned_cols=131  Identities=12%  Similarity=0.159  Sum_probs=62.4

Q ss_pred             cceeeehhhHHHHHHHHhhcCCCCch-hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhcCCCCCCCCcccHHhH
Q 036632           78 SQIVFLINNYDMTIAVLKEASPEGGK-IQLHYEELLKSNTALFVEELLLEHFSDLIKFVKTRASEDSSSTSEKPITVAEI  156 (240)
Q Consensus        78 ~~~iFLiNNYdlIl~il~e~~~~~~~-~~~~f~~ll~~~~~~fVe~~L~~~F~~li~fVk~~e~~~~~~~~~~~i~~~~v  156 (240)
                      .+.+||.||+.+|+..+..-..  +. ....+.+.+.+.++.+.. ......+.+.+...+......++  ....+.+.+
T Consensus       399 ~~~iFlmNN~~yI~~~v~~SeL--~~lLg~~~~~~~~~~~~~~~~-y~~~~W~~v~~~L~d~~~~~~~~--~~sk~k~~i  473 (551)
T d2b7ma1         399 RIGFFILMNLTLVEQIVEKSEL--NLMLAGEGHSRLERLKKRYIS-YMVSDWRDLTANLMDSVFIDSSG--KKSKDKEQI  473 (551)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHH--HHHHTTHHHHHHHHHHHHHHH-HHTHHHHHHHHHTC--------------------
T ss_pred             hhhHHHHhhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccCCCCC--CCCccHHHH
Confidence            3459999999999998865311  11 112334444555555554 33346666666655433221111  112233456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-hccCcccHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 036632          157 EPLVKDFASRWKAAIELMHKDVIT-SFSNFLCGMEILRAALTQLLLYYTRLSDSIKRVAGGS  217 (240)
Q Consensus       157 ~~i~~~F~~~Wk~~ie~i~~ev~~-~F~nf~~g~~ILq~~ltqll~yY~rF~~i~~~~~~~~  217 (240)
                      +.-.+.|+.    ++|++.+.-.+ ..++-....+|-+.+-..++--|.||.+=.....++|
T Consensus       474 KekFk~FN~----~Fee~~~~q~~~~i~D~~LR~~L~~~i~~~v~p~Y~~F~~ry~~~~k~~  531 (551)
T d2b7ma1         474 KEKFRKFNE----GFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKNP  531 (551)
T ss_dssp             --------C----HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCS
T ss_pred             HHHHHHHHH----HHHHHHHHhCCccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence            666677765    46666665444 3445555566666666667888888887554333443