Citrus Sinensis ID: 036636

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFFLLAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFVKENCSDDSA
cEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEEEEEEEEcccccEEcccEEEEccccccccccccccccccEEEcccccccHHHHHHcccccccEEEEccccccccccccEEEEEccccccccccEEEEEccccccccEEEEEEEEEEccEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHccccccccccccccccEEcccccccccEEEEEEcccEEEEccccEEEEEccccEEEEEEEcccccEEEEEcEEEEEEEEEEEccccEEEEEccccccccc
cEEEEEccccccEEEEEEcccccEEEccccccccccccccccccHHcccccccccEEEEEEEcccccccEEEEEEEEEEcccccccEEEccEEEEEcccccccEEEEcccccccEEEcccccccEHHHcccccccEEEEEEEccccccccccEEEEEccccccccccEEEEEcccccccEEEEEEEEEEEccEEEEccHHHHEEccccccEEEEEcccEEEEccHHHHHHHHHHHHHHHHHccccccccccccEEEccccccccccccEEEEEEccEEccccHHHEEEEEccccEEEEEEccccccEEEEEEEEEccEEEEEEccccEEEEccccHHHHcc
mvrlfigtpskgVLLILDTGSALIYAifdprksssfqkincdhpdctyfkcvnEQCVYTMKYADQSVTKGFAAHETISVIGKGEGKAIFHGAlfgcsndnhgfdedardGALAGVLGLSRVTISFISQLGSIIKKRFSYclviplpngeytssylkfgtdmgyrrpstqatkfinhpnnfyylslkdisidnermnfppdtfditvsgeggciidsgsvltYFHSDVYWKLHEKFVSYFERFQLaqlsdcpepiqlcyflpetfnrfpsmafyfedanlridgenvfiIDYENHFFLLAVAPHDDLVALIGsqqqrdtrfVYDLNIDLLSFVKencsddsa
mvrlfigtpskgVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRPSTQatkfinhpnnFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFFLLAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLsfvkencsddsa
MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFFLLAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFVKENCSDDSA
***LFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYF***********VFIIDYENHFFLLAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFVK********
MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQ**NC****CTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCLVIPL***********FGTDMGYRR*STQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSYF***********PEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFFLLAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFV**NCS****
MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFFLLAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFVK********
MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFFLLAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFVKENCS****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFFLLAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFVKENCSDDSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query341 2.2.26 [Sep-21-2011]
Q766C3437 Aspartic proteinase nepen N/A no 0.929 0.725 0.298 5e-35
Q766C2438 Aspartic proteinase nepen N/A no 0.932 0.726 0.291 7e-35
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.929 0.634 0.269 9e-28
Q3EBM5447 Probable aspartic proteas no no 0.944 0.720 0.295 3e-25
Q6XBF8437 Aspartic proteinase CDR1 no no 0.944 0.736 0.269 2e-23
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.929 0.674 0.244 7e-20
Q9S9K4475 Aspartic proteinase-like no no 0.926 0.665 0.231 4e-16
Q9LZL3453 Aspartic proteinase PCS1 no no 0.923 0.695 0.235 2e-13
Q9LX20528 Aspartic proteinase-like no no 0.888 0.573 0.230 1e-06
Q0IU52410 Aspartic proteinase Asp1 no no 0.912 0.758 0.233 1e-05
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function desciption
 Score =  148 bits (374), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 165/358 (46%), Gaps = 41/358 (11%)

Query: 1   MVRLFIGTPSKGVLLILDTGSALIYA--------------IFDPRKSSSFQKINCDHPDC 46
           ++ L IGTP++    I+DTGS LI+               IF+P+ SSSF  + C    C
Sbjct: 96  LMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPIFNPQGSSSFSTLPCSSQLC 155

Query: 47  TYFK---CVNEQCVYTMKYADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGF 103
                  C N  C YT  Y D S T+G    ET++      G        FGC  +N GF
Sbjct: 156 QALSSPTCSNNFCQYTYGYGDGSETQGSMGTETLTF-----GSVSIPNITFGCGENNQGF 210

Query: 104 DEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGY 163
            +    G  AG++G+ R  +S  SQL      +FSYC+    P G  T S L  G+    
Sbjct: 211 GQ----GNGAGLVGMGRGPLSLPSQLD---VTKFSYCMT---PIGSSTPSNLLLGSLANS 260

Query: 164 RRPSTQATKFINHPN--NFYYLSLKDISIDNERMNFPPDTFDI-TVSGEGGCIIDSGSVL 220
               +  T  I       FYY++L  +S+ + R+   P  F + + +G GG IIDSG+ L
Sbjct: 261 VTAGSPNTTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTL 320

Query: 221 TYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFN--RFPSMAFYFEDAN 278
           TYF ++ Y  + ++F+S   +  L  ++       LC+  P   +  + P+   +F+  +
Sbjct: 321 TYFVNNAYQSVRQEFIS---QINLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGD 377

Query: 279 LRIDGENVFIIDYENHFFLLAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFVKENC 336
           L +  EN F I   N    LA+      +++ G+ QQ++   VYD    ++SF    C
Sbjct: 378 LELPSENYF-ISPSNGLICLAMGSSSQGMSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434
Extracellular proteinase found in the pitcher fluid of carnivorous plants. Digest prey for nitrogen uptake.
Nepenthes gracilis (taxid: 150966)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: 1EC: 2
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
255563739414 DNA binding protein, putative [Ricinus c 0.920 0.758 0.344 9e-43
255563741 448 Aspartic proteinase nepenthesin-2 precur 0.961 0.732 0.326 7e-41
449523529 461 PREDICTED: aspartic proteinase nepenthes 0.935 0.691 0.321 3e-38
449453902 716 PREDICTED: LOW QUALITY PROTEIN: aspartic 0.935 0.445 0.321 4e-38
357158688 443 PREDICTED: aspartic proteinase nepenthes 0.956 0.735 0.319 2e-37
224286173383 unknown [Picea sitchensis] 0.929 0.827 0.305 4e-35
225438315436 PREDICTED: aspartic proteinase nepenthes 0.920 0.720 0.321 1e-34
242079447441 hypothetical protein SORBIDRAFT_07g02278 0.950 0.734 0.296 6e-34
30678047 461 aspartyl protease-like protein [Arabidop 0.932 0.689 0.306 1e-33
356516413 453 PREDICTED: aspartic proteinase nepenthes 0.938 0.706 0.329 1e-33
>gi|255563739|ref|XP_002522871.1| DNA binding protein, putative [Ricinus communis] gi|223537955|gb|EEF39569.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 184/348 (52%), Gaps = 34/348 (9%)

Query: 1   MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTM 60
           +V++ IG P   + L+ DTGSALI+ + +       Q I         F+C N +C YT 
Sbjct: 92  LVKVRIGNPGIPLYLVPDTGSALIWTVNN-------QNI---------FQCRNNKCSYTR 135

Query: 61  KYADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSR 120
           +Y D S+T G AA + +    +G  +  F+   FGCS DN  F      G   GV+GL+ 
Sbjct: 136 RYDDGSITTGVAAQDILQ--SEGSERIPFY---FGCSRDNQNFSVFEHTGKSGGVMGLNT 190

Query: 121 VTISFISQLGSIIKKRFSYCLVIPLPNGEYT--SSYLKFGTDMGYRRPSTQATKFINHPN 178
             +S + QL  I ++RFSYCL  P  +G     SS L+FG D+   R   Q+T  ++ P+
Sbjct: 191 SPVSLLQQLSHITQRRFSYCLN-PYQHGSEPPPSSLLRFGNDIRKGRRRFQSTPLMSSPD 249

Query: 179 N-FYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVS 237
              Y+L+L D+++  +R++ PP TF +   G GG IIDSG+ LT+     Y +L   F +
Sbjct: 250 RPNYFLNLLDMTVAGQRLHLPPGTFALRQDGTGGTIIDSGTGLTFITQTAYPRLISAFQN 309

Query: 238 YFER--FQLAQLSDCPEPIQLCYFLP--ETFNRFPSMAFYFEDANLRIDGENVFIIDYEN 293
           YF+   FQ   +   PE   LCY      TF+   SM F+FE A+  +  + V++   ++
Sbjct: 310 YFDHRGFQRVHI---PE-FDLCYSFRGNHTFHDHASMTFHFERADFTVQADYVYLPMEDD 365

Query: 294 HFFLLAVAP-HDDLVALIGSQQQRDTRFVYDLNIDLLSFVKENCSDDS 340
           + F +A+ P       +IG+  Q +TRF+YD     L F+ ENC +D+
Sbjct: 366 NAFCVALQPTPPQQRTVIGAINQGNTRFIYDAAAHQLLFIAENCRNDA 413

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255563741|ref|XP_002522872.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] gi|223537956|gb|EEF39570.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449523529|ref|XP_004168776.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449453902|ref|XP_004144695.1| PREDICTED: LOW QUALITY PROTEIN: aspartic proteinase nepenthesin-1-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|357158688|ref|XP_003578209.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|224286173|gb|ACN40797.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|225438315|ref|XP_002272802.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|242079447|ref|XP_002444492.1| hypothetical protein SORBIDRAFT_07g022780 [Sorghum bicolor] gi|241940842|gb|EES13987.1| hypothetical protein SORBIDRAFT_07g022780 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|30678047|ref|NP_565298.2| aspartyl protease-like protein [Arabidopsis thaliana] gi|30102688|gb|AAP21262.1| At2g03200 [Arabidopsis thaliana] gi|110736021|dbj|BAE99983.1| putative chloroplast nucleoid DNA binding protein [Arabidopsis thaliana] gi|330250580|gb|AEC05674.1| aspartyl protease-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356516413|ref|XP_003526889.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
TAIR|locus:2010786431 AT1G64830 [Arabidopsis thalian 0.870 0.689 0.287 6.5e-39
TAIR|locus:2045615527 AT2G42980 [Arabidopsis thalian 0.894 0.578 0.308 1.1e-37
TAIR|locus:2077700535 AT3G59080 "AT3G59080" [Arabido 0.894 0.570 0.300 1.7e-34
TAIR|locus:504955954447 AT2G35615 [Arabidopsis thalian 0.876 0.668 0.308 6.2e-33
TAIR|locus:2056916461 AT2G03200 [Arabidopsis thalian 0.862 0.637 0.311 8.5e-33
TAIR|locus:2206184445 AT1G31450 [Arabidopsis thalian 0.873 0.669 0.290 2.2e-32
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.929 0.634 0.294 2.6e-31
TAIR|locus:2145954437 CDR1 "CONSTITUTIVE DISEASE RES 0.935 0.729 0.275 4.9e-30
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.920 0.650 0.308 1e-28
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.926 0.654 0.303 1e-28
TAIR|locus:2010786 AT1G64830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 347 (127.2 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
 Identities = 91/317 (28%), Positives = 160/317 (50%)

Query:    27 IFDPRKSSSFQKINCDHPDCTYFK---CVNEQ--CVYTMKYADQSVTKGFAAHETISVIG 81
             +FDP++SS+++K++C    C   +   C  ++  C YT+ Y D S TKG  A +T+++  
Sbjct:   127 LFDPKESSTYRKVSCSSSQCRALEDASCSTDENTCSYTITYGDNSYTKGDVAVDTVTMGS 186

Query:    82 KGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCL 141
              G         + GC ++N G      D A +G++GL   + S +SQL   I  +FSYCL
Sbjct:   187 SGRRPVSLRNMIIGCGHENTG----TFDPAGSGIIGLGGGSTSLVSQLRKSINGKFSYCL 242

Query:   142 VIPLPNGEYTSSYLKFGTDMGYRRPSTQATKFINH-PNNFYYLSLKDISIDNERMNFPPD 200
             V P  +    +S + FGT+         +T  +   P  +Y+L+L+ IS+ ++++ F   
Sbjct:   243 V-PFTSETGLTSKINFGTNGIVSGDGVVSTSMVKKDPATYYFLNLEAISVGSKKIQFTST 301

Query:   201 TFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFL 260
              F    +GEG  +IDSG+ LT   S+ Y++L E  V+     +  ++ D    + LCY  
Sbjct:   302 IFG---TGEGNIVIDSGTTLTLLPSNFYYEL-ESVVA--STIKAERVQDPDGILSLCYRD 355

Query:   261 PETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFFLLAVAPHDDLVALIGSQQQRDTRF 320
               +F + P +  +F+  ++++   N F+   E+     A A ++ L  + G+  Q +   
Sbjct:   356 SSSF-KVPDITVHFKGGDVKLGNLNTFVAVSED-VSCFAFAANEQLT-IFGNLAQMNFLV 412

Query:   321 VYDLNIDLLSFVKENCS 337
              YD     +SF K +CS
Sbjct:   413 GYDTVSGTVSFKKTDCS 429
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
TAIR|locus:2045615 AT2G42980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077700 AT3G59080 "AT3G59080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955954 AT2G35615 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056916 AT2G03200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206184 AT1G31450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 2e-59
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 1e-45
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 3e-41
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 2e-28
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 2e-19
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 1e-16
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 8e-08
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 1e-06
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 1e-04
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 0.002
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 0.003
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  192 bits (489), Expect = 2e-59
 Identities = 100/340 (29%), Positives = 133/340 (39%), Gaps = 81/340 (23%)

Query: 1   MVRLFIGTPSKGVLLILDTGSALIYAIFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTM 60
           +V L IGTP +   LI+DTGS L +               C              C Y  
Sbjct: 3   LVTLSIGTPPQPFSLIVDTGSDLTW-------------TQC--------------CSYEY 35

Query: 61  KYADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSR 120
            Y D S T G  A ET +    G+         FGC  DN G       G   G+LGL R
Sbjct: 36  SYGDGSSTSGVLATETFTF---GDSSVSVPNVAFGCGTDNEGG----SFGGADGILGLGR 88

Query: 121 VTISFISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFGTDMGYRRPSTQATKFINHPNN- 179
             +S +SQLGS   K FSYCLV     G   SS L  G            T  + +P N 
Sbjct: 89  GPLSLVSQLGSTGNK-FSYCLVPHDDTG--GSSPLILGDAADLGGSGVVYTPLVKNPANP 145

Query: 180 -FYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSY 238
            +YY++L+ IS+  +R+  PP  F I   G GG IIDSG+ LTY     Y          
Sbjct: 146 TYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY---------- 195

Query: 239 FERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFED-ANLRIDGENVFIIDYENHFFL 297
                                        P +  +F+  A+L +  EN F +D       
Sbjct: 196 -----------------------------PDLTLHFDGGADLELPPENYF-VDVGEGVVC 225

Query: 298 LAVAPHDDL-VALIGSQQQRDTRFVYDLNIDLLSFVKENC 336
           LA+       V+++G+ QQ++    YDL    L F   +C
Sbjct: 226 LAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 341
PLN03146431 aspartyl protease family protein; Provisional 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.97
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.95
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.85
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.03
PF1365090 Asp_protease_2: Aspartyl protease 96.87
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 96.06
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.76
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 95.41
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 94.38
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 94.3
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 94.06
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 92.17
PF12384177 Peptidase_A2B: Ty3 transposon peptidase; InterPro: 90.37
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 89.0
PF1365090 Asp_protease_2: Aspartyl protease 88.52
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 86.45
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 84.56
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 84.16
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 82.15
PF02160201 Peptidase_A3: Cauliflower mosaic virus peptidase ( 81.44
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 80.16
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.4e-61  Score=454.14  Aligned_cols=326  Identities=31%  Similarity=0.565  Sum_probs=266.8

Q ss_pred             CeEEeecCCCCeEEEEEEcCCCeeEE--------------EecCCCCCCceeecCCCCCCCC----CCCCCC-CceeEEe
Q 036636            1 MVRLFIGTPSKGVLLILDTGSALIYA--------------IFDPRKSSSFQKINCDHPDCTY----FKCVNE-QCVYTMK   61 (341)
Q Consensus         1 ~~~i~iGtP~q~~~v~~DTGSs~lwv--------------~y~p~~Sst~~~~~c~~~~C~~----~~c~~~-~~~~~~~   61 (341)
                      +++|.||||||++.|+|||||+++||              .|||++|+||+.++|.+..|..    ..|..+ .|.|.+.
T Consensus        86 ~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~  165 (431)
T PLN03146         86 LMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYS  165 (431)
T ss_pred             EEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEE
Confidence            47999999999999999999999999              6999999999999999999986    237543 4999999


Q ss_pred             cCCCceeEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCCCchHHhhhcccCCceEEec
Q 036636           62 YADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSIIKKRFSYCL  141 (341)
Q Consensus        62 Y~~G~~~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~Fs~~l  141 (341)
                      |+||+.+.|.+++|+|+|++..+....++++.|||++...+.    +....+||||||+..+|++.||...+.++||+||
T Consensus       166 Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~----f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL  241 (431)
T PLN03146        166 YGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT----FDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCL  241 (431)
T ss_pred             eCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC----ccCCCceeEecCCCCccHHHHhhHhhCCcEEEEC
Confidence            999988899999999999543333337899999999987762    2235799999999999999999877777999999


Q ss_pred             CCCCCCCCCcceeEEEcCCCCCCCCCceeeeeecCC-CCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEccccce
Q 036636          142 VIPLPNGEYTSSYLKFGTDMGYRRPSTQATKFINHP-NNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVL  220 (341)
Q Consensus       142 ~~~~~~~~~~~G~l~fGg~d~~~~~~~~~~pl~~~~-~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDTGtt~  220 (341)
                      .+...... ..|.|+||+......+.+.|+|++.+. +.+|.|.|++|+||++++.++...+.  ..+..++||||||++
T Consensus       242 ~~~~~~~~-~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~  318 (431)
T PLN03146        242 VPLSSDSN-GTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTL  318 (431)
T ss_pred             CCCCCCCC-CcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCccc
Confidence            76322111 179999999643333458999998543 57999999999999999887665553  123567999999999


Q ss_pred             eeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEcCCCeEEEEE
Q 036636          221 TYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFFLLAV  300 (341)
Q Consensus       221 ~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~~~~~C~~~  300 (341)
                      ++||+++|++|.+++.+++....... .  ...+..||.... ...+|+|+|+|+|+++.+++++ |++...++..|+++
T Consensus       319 t~Lp~~~y~~l~~~~~~~~~~~~~~~-~--~~~~~~C~~~~~-~~~~P~i~~~F~Ga~~~l~~~~-~~~~~~~~~~Cl~~  393 (431)
T PLN03146        319 TLLPSDFYSELESAVEEAIGGERVSD-P--QGLLSLCYSSTS-DIKLPIITAHFTGADVKLQPLN-TFVKVSEDLVCFAM  393 (431)
T ss_pred             eecCHHHHHHHHHHHHHHhccccCCC-C--CCCCCccccCCC-CCCCCeEEEEECCCeeecCcce-eEEEcCCCcEEEEE
Confidence            99999999999999998876332221 1  234668997541 2468999999999999999999 88877667799998


Q ss_pred             ecCCCCceeechhhccceEEEEECCCCEEEEEcCCCCCC
Q 036636          301 APHDDLVALIGSQQQRDTRFVYDLNIDLLSFVKENCSDD  339 (341)
Q Consensus       301 ~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~c~~~  339 (341)
                      .+.. ..+|||+.|||++||+||.+++|||||+++|+..
T Consensus       394 ~~~~-~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~~  431 (431)
T PLN03146        394 IPTS-SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTKM  431 (431)
T ss_pred             ecCC-CceEECeeeEeeEEEEEECCCCEEeeecCCcCcC
Confidence            7643 3699999999999999999999999999999863

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 2e-06
3vla_A413 Crystal Structure Of Edgp Length = 413 2e-06
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure 
Iteration: 1

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 138/368 (37%), Gaps = 60/368 (16%)
Query: 15  LILDTGSALIYAIFDPR-KSSSFQKINCDHPDCTYFK--------------CVNEQC-VY 58
           L++D G   ++   D    SS+++ + C    C+                 C N  C V+
Sbjct: 37  LVVDLGGRFLWVDCDQNYVSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVF 96
Query: 59  TMKYADQSVTKGFAAHETISVI---GKGEGKAIFHGA-LFGCSNDNHGFDEDARDGALAG 114
                  + T G  A + +SV    G   G+ +     +F C+  +    ++   G + G
Sbjct: 97  PENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTS--LLQNLASGVV-G 153
Query: 115 VLGLSRVTISFISQLGSII--KKRFSYCLVIPLPNGEYTS-SYLKFGTDMGYRRP----- 166
           + GL R  I+  SQ  S    K++F+ CL     +G  +S S + FG D     P     
Sbjct: 154 MAGLGRTRIALPSQFASAFSFKRKFAMCL-----SGSTSSNSVIIFGNDPYTFLPNIIVS 208
Query: 167 --------------STQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGC 212
                         ST AT     P+  Y++ +K I I+++ +        I+ +G GG 
Sbjct: 209 DKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGT 268
Query: 213 IIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFN-----RF 267
            I + +  T   + +Y  + E F+       + +++    P   C+      +       
Sbjct: 269 KISTINPYTVLETSIYKAVTEAFIKESAARNITRVASV-APFGACFSTDNILSTRLGPSV 327
Query: 268 PSMAFYFEDANL--RIDGENVFIIDYENHFFLLAVAPHDDLVA--LIGSQQQRDTRFVYD 323
           PS+    +  ++   I G N  +   +N   L  V    +L    +IG  Q  D    +D
Sbjct: 328 PSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFD 387
Query: 324 LNIDLLSF 331
           L    + F
Sbjct: 388 LATSRVGF 395
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 2e-54
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 3e-53
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 4e-52
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 2e-08
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 8e-08
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 1e-07
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 1e-07
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 2e-07
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 3e-07
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 2e-06
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 2e-05
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 3e-05
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 8e-05
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 1e-04
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 2e-04
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 2e-04
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 3e-04
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 3e-04
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 4e-04
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 4e-04
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 5e-04
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
 Score =  182 bits (463), Expect = 2e-54
 Identities = 67/385 (17%), Positives = 122/385 (31%), Gaps = 50/385 (12%)

Query: 2   VRLFIGTPSKGVLLILDTGSALIY---------AIFDPRKSSSFQKINCDHPDCTYFKCV 52
             +   TP     L++D G   ++         + + P +  + Q        C      
Sbjct: 24  TTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPVRCRTSQCSLSGSIACGDCFNG 83

Query: 53  -------NEQCVYTMKYADQSVTKGFAAHETISV----IGKGEGKAIFHGALFGCSNDNH 101
                  N   V+       + T G  A + +SV                 +F C+  + 
Sbjct: 84  PRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSL 143

Query: 102 GFDEDARDGALAGVLGLSRVTISFISQLGS--IIKKRFSYCLV---------------IP 144
             +       + G+ GL R  I+  SQ  S    K++F+ CL                  
Sbjct: 144 LQNLA---SGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYT 200

Query: 145 LPNGEYTSSYLKFGTDMGYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDI 204
                  S      T +     ST AT     P+  Y++ +K I I+++ +        I
Sbjct: 201 FLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSI 260

Query: 205 TVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETF 264
           + +G GG  I + +  T   + +Y  + E F+       + +++    P   C+      
Sbjct: 261 SSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVAS-VAPFGACFSTDNIL 319

Query: 265 N-----RFPSMAFYFE--DANLRIDGENVFIIDYENHFFLLAVAPHDDL--VALIGSQQQ 315
           +       PS+    +       I G N  +   +N   L  V    +L    +IG  Q 
Sbjct: 320 STRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQL 379

Query: 316 RDTRFVYDLNIDLLSFVKENCSDDS 340
            D    +DL    + F        +
Sbjct: 380 EDNLVQFDLATSRVGFSGTLLGSRT 404
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.75
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.7
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 95.22
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 94.23
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 91.39
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 81.88
2hs1_A99 HIV-1 protease; ultra-high resolution active site 80.13
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=6e-62  Score=460.60  Aligned_cols=324  Identities=21%  Similarity=0.340  Sum_probs=268.5

Q ss_pred             CeEEeecCCCCeEEEEEEcCCCeeEEEecC-CCCCCceeecCCCCCCCC--------------CCCCCCCceeEEec-CC
Q 036636            1 MVRLFIGTPSKGVLLILDTGSALIYAIFDP-RKSSSFQKINCDHPDCTY--------------FKCVNEQCVYTMKY-AD   64 (341)
Q Consensus         1 ~~~i~iGtP~q~~~v~~DTGSs~lwv~y~p-~~Sst~~~~~c~~~~C~~--------------~~c~~~~~~~~~~Y-~~   64 (341)
                      +++|.||||||++.|+|||||+++||++++ .+|+||+.+.|.+..|..              ..|.++.|.|.+.| ++
T Consensus        23 ~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c~~Sst~~~v~C~s~~C~~~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d  102 (413)
T 3vla_A           23 VTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVI  102 (413)
T ss_dssp             EEEEEETTTTEEEEEEEETTCSSEEEECSSSCCCTTCEECBTTSHHHHHTTCCEEECCSSCCBTTBCSSEEEECCEETTT
T ss_pred             EEEEEcCCCCcceEEEEeCCChhhhcccCCCCCCCCcCccCCCcccccccccCCCcccccCCCCCCCCCcCcceeecCcC
Confidence            478999999999999999999999997764 689999999999877764              13555669999999 58


Q ss_pred             CceeEEEEEEEEEEEEecCCC----ceeecceEEecccCCCCCcccccCCCcceeeecCCCCCchHHhhhcc--cCCceE
Q 036636           65 QSVTKGFAAHETISVIGKGEG----KAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVTISFISQLGSI--IKKRFS  138 (341)
Q Consensus        65 G~~~~G~~~~D~v~i~~~~g~----~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~--~~~~Fs  138 (341)
                      |+++.|++++|+|+|+..+|.    .+.++++.|||++.+...   ......+||||||++.+|++.||..+  ++++||
T Consensus       103 ~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~---g~~~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS  179 (413)
T 3vla_A          103 NTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQ---NLASGVVGMAGLGRTRIALPSQFASAFSFKRKFA  179 (413)
T ss_dssp             TEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGT---TSCTTCCEEEECSSSSSSHHHHHHHHHTCCSEEE
T ss_pred             CceeeeEEEEEEEEecccCCCCcccceeeCCEEEECccccccc---CcccccccccccCCCCcchHHHHhhhcCCCceEE
Confidence            889999999999999766554    248889999999986321   13467899999999999999999876  579999


Q ss_pred             EecCCCCCCCCCcceeEEEcCCCCC------CCCC-ceeeeeecCC------------CCeeEEEEeeEEEcCeeeecCC
Q 036636          139 YCLVIPLPNGEYTSSYLKFGTDMGY------RRPS-TQATKFINHP------------NNFYYLSLKDISIDNERMNFPP  199 (341)
Q Consensus       139 ~~l~~~~~~~~~~~G~l~fGg~d~~------~~~~-~~~~pl~~~~------------~~~~~v~l~~i~v~~~~~~~~~  199 (341)
                      +||.+. ...   +|.|+||+.+..      +.++ +.|+||+.++            ..+|.|.|++|+|+++.+.++.
T Consensus       180 ~cL~~~-~~~---~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~  255 (413)
T 3vla_A          180 MCLSGS-TSS---NSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNT  255 (413)
T ss_dssp             EECCSC-SSS---CEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCCCCSCEECCCEEEETTEEECCCG
T ss_pred             EeCCCC-CCC---ceEEEECCCcccccccccccCCceeEeecccCCccccccccccCCCceEEEEEEEEEECCEEccCCc
Confidence            999984 233   899999998742      3567 9999999863            1699999999999999998887


Q ss_pred             CCccccccCCCceEEccccceeeechHHHHHHHHHHHHHhhh---cccccCCCCCCCCCceeecC-CC----CCCCCeEE
Q 036636          200 DTFDITVSGEGGCIIDSGSVLTYFHSDVYWKLHEKFVSYFER---FQLAQLSDCPEPIQLCYFLP-ET----FNRFPSMA  271 (341)
Q Consensus       200 ~~~~~~~~~~~~~iiDTGtt~~~lp~~~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~C~~~~-~~----~~~~P~i~  271 (341)
                      ..+++++++++++||||||++++||+++|++|.++|.+++..   .+...    ...+..|+..+ ..    ...+|+|+
T Consensus       256 ~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~----~~~~~~C~~~~~~~~~~~~~~lP~i~  331 (413)
T 3vla_A          256 SLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVAS----VAPFGACFSTDNILSTRLGPSVPSID  331 (413)
T ss_dssp             GGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECC----CTTCSCEEECTTCCEETTEECCCCEE
T ss_pred             hhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCC----CCCCcceeccCCccccccccCCCcEE
Confidence            777766556788999999999999999999999999988641   11121    23567999876 11    24799999


Q ss_pred             EEEcC--cEEEeeCCCcEEEEcCCCeEEEEEec-C--CCCceeechhhccceEEEEECCCCEEEEEcCCC
Q 036636          272 FYFED--ANLRIDGENVFIIDYENHFFLLAVAP-H--DDLVALIGSQQQRDTRFVYDLNIDLLSFVKENC  336 (341)
Q Consensus       272 f~f~g--~~~~i~~~~~y~~~~~~~~~C~~~~~-~--~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~c  336 (341)
                      |+|+|  +.++|++++ |+.+.+++..|++++. +  ..+.||||+.|||++|+|||++++|||||++.+
T Consensus       332 f~f~g~~~~~~l~~~~-y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~~~~riGfa~~~~  400 (413)
T 3vla_A          332 LVLQSESVVWTITGSN-SMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLL  400 (413)
T ss_dssp             EECSSTTCEEEECHHH-HEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEETTTTEEEEEEEGG
T ss_pred             EEEcCCcEEEEeCccc-eEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEECCCCEEEEEEecc
Confidence            99998  899999999 9887655789998877 2  236899999999999999999999999998643
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 341
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 5e-31
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 8e-19
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 8e-18
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 2e-17
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 2e-16
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 5e-16
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 6e-16
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 9e-16
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 1e-15
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 3e-15
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 7e-15
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 9e-15
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 1e-14
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 1e-14
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 3e-14
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 2e-13
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 2e-13
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 3e-13
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 5e-13
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 1e-11
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 1e-10
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 3e-10
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  118 bits (296), Expect = 5e-31
 Identities = 51/374 (13%), Positives = 105/374 (28%), Gaps = 48/374 (12%)

Query: 2   VRLFIGTPSKGVLLILDTGSALI------------YAIFDP--RKSSSFQKINCDHPDCT 47
           +    G       L+LD    L+                 P    ++++    C  P C 
Sbjct: 18  IPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPSCG 72

Query: 48  YFKCVNEQCVYTMKYADQSVTKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDA 107
             K       Y       +   G  +H           K +    +   +         +
Sbjct: 73  SDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLAS 132

Query: 108 RDGALAGVLGLSRVTISFISQLGSIIKKRFSYCLVIPLPNGEYTSSYLKFG-TDMGYRRP 166
                 GV GL+   ++  +Q+ S   ++ +   ++ LP G    +    G         
Sbjct: 133 LPRGSTGVAGLANSGLALPAQVAS--AQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQ 190

Query: 167 STQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDSGSVLTYFHSD 226
           S   T  +    +  +     IS  +  +              GG ++ +         D
Sbjct: 191 SMPYTPLVTKGGSPAH----YISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPD 246

Query: 227 VYWKLHEKF-----VSYFERFQLAQLSDCPEPIQLCYFLPETFN-----RFPSMAFYFED 276
           VY  L + F       +     +A+  +   P  +CY      N       P++    + 
Sbjct: 247 VYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDG 306

Query: 277 -ANLRIDGENVFIIDYENHFFL-------LAVAPHDDLVALIGSQQQRDTRFVYDLNIDL 328
            ++  + G+N  +   +    +       +A         ++G  Q  D    +D+    
Sbjct: 307 GSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKR 366

Query: 329 LSFVKE----NCSD 338
           L F +      C  
Sbjct: 367 LGFSRLPHFTGCGG 380
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

Probab=100.00  E-value=1e-52  Score=384.62  Aligned_cols=283  Identities=18%  Similarity=0.251  Sum_probs=231.1

Q ss_pred             CeEEeecCCCCeEEEEEEcCCCeeEE-------------EecCCCCCCceeecCCCCCCCCCCCCCCCceeEEecCCCce
Q 036636            1 MVRLFIGTPSKGVLLILDTGSALIYA-------------IFDPRKSSSFQKINCDHPDCTYFKCVNEQCVYTMKYADQSV   67 (341)
Q Consensus         1 ~~~i~iGtP~q~~~v~~DTGSs~lwv-------------~y~p~~Sst~~~~~c~~~~C~~~~c~~~~~~~~~~Y~~G~~   67 (341)
                      +++|.||||||++.|++||||+++||             .|||++|+|++..               +|.+.+.|++|+.
T Consensus        18 ~~~i~iGtP~Q~~~v~vDTGS~~~Wv~~~~C~~c~~~~~~y~~~~SsT~~~~---------------~~~~~~~y~~g~~   82 (325)
T d2apra_          18 YGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQAD---------------GRTWSISYGDGSS   82 (325)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSCCTTSCCBCGGGCTTCEEE---------------EEEEEEECTTSCE
T ss_pred             EEEEEEeCCCEEEEEEEECCCCcEEEeCCCCCccccCCCccCcccCCceeEC---------------CeEEEEEeCCCCe
Confidence            47999999999999999999999999             4666666666653               4899999999988


Q ss_pred             eEEEEEEEEEEEEecCCCceeecceEEecccCCCCCcccccCCCcceeeecCCCC-------CchHHhhhcc--c-CCce
Q 036636           68 TKGFAAHETISVIGKGEGKAIFHGALFGCSNDNHGFDEDARDGALAGVLGLSRVT-------ISFISQLGSI--I-KKRF  137 (341)
Q Consensus        68 ~~G~~~~D~v~i~~~~g~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~-------~s~~~ql~~~--~-~~~F  137 (341)
                      +.|.+++|++++    ++. .++++.|+++......   ......+||+|||+..       .+++.++..+  + +++|
T Consensus        83 ~~G~~~~D~~~~----~~~-~~~~~~~~~~~~~~~~---~~~~~~~GilGlg~~~~~~~~~~~~~~~~l~~~g~i~~~~f  154 (325)
T d2apra_          83 ASGILAKDNVNL----GGL-LIKGQTIELAKREAAS---FASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIF  154 (325)
T ss_dssp             EEEEEEEEEEEE----TTE-EEEEEEEEEEEEECHH---HHTSSCSEEEECSCGGGCSSTTCCCHHHHHHHTTSCSSSEE
T ss_pred             EEEEEEeeeEEe----eee-eccCcceeeeeeeccc---ccccccCcccccccccccccccCCcchhHHHhhccccceeE
Confidence            999999999999    887 8999999998876542   2345789999999754       3466666665  3 5899


Q ss_pred             EEecCCCCCCCCCcceeEEEcCCC-CCCCCCceeeeeecCCCCeeEEEEeeEEEcCeeeecCCCCccccccCCCceEEcc
Q 036636          138 SYCLVIPLPNGEYTSSYLKFGTDM-GYRRPSTQATKFINHPNNFYYLSLKDISIDNERMNFPPDTFDITVSGEGGCIIDS  216 (341)
Q Consensus       138 s~~l~~~~~~~~~~~G~l~fGg~d-~~~~~~~~~~pl~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDT  216 (341)
                      |+||.+.....   .|.|+|||+| .++.++++|+|+... ..+|.|.++++.+++..+..           +..++|||
T Consensus       155 s~~l~~~~~~~---~g~l~~Gg~d~~~~~~~~~~~~~~~~-~~~~~v~l~~i~i~~~~~~~-----------~~~~iiDS  219 (325)
T d2apra_         155 GVYLGKAKNGG---GGEYIFGGYDSTKFKGSLTTVPIDNS-RGWWGITVDRATVGTSTVAS-----------SFDGILDT  219 (325)
T ss_dssp             EEEECCGGGTC---CEEEEETCCCGGGBCSCCEEEECBCT-TSSCEEEECEEEETTEEEEC-----------CEEEEECT
T ss_pred             EEEeccCCCCC---CeEEEecCCCchhhccceeeEeecCC-CceEEEEEeeEEECCEeecc-----------eeeeeccC
Confidence            99998764344   7999999998 557899999999865 68999999999999987753           45699999


Q ss_pred             ccceeeechHHHHHHHHHHHHHhhhcccccCCCCCCCCCceeecCCCCCCCCeEEEEEcCcEEEeeCCCcEEEEcCCCeE
Q 036636          217 GSVLTYFHSDVYWKLHEKFVSYFERFQLAQLSDCPEPIQLCYFLPETFNRFPSMAFYFEDANLRIDGENVFIIDYENHFF  296 (341)
Q Consensus       217 Gtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~f~f~g~~~~i~~~~~y~~~~~~~~~  296 (341)
                      ||++++||.+++++|.+.+.+...   ..     ..+..+|..     ..+|+|+|+|+|.+++|+|++ |+.+...+.|
T Consensus       220 Gt~~~~lp~~~~~~l~~~~~~~~~---~~-----~~~~~~C~~-----~~~p~i~f~f~g~~~~i~~~~-y~~~~~~~~C  285 (325)
T d2apra_         220 GTTLLILPNNIAASVARAYGASDN---GD-----GTYTISCDT-----SAFKPLVFSINGASFQVSPDS-LVFEEFQGQC  285 (325)
T ss_dssp             TCSSEEEEHHHHHHHHHHHTCEEC---SS-----SCEEECSCG-----GGCCCEEEEETTEEEEECGGG-GEEEEETTEE
T ss_pred             CCccccCCHHHHHHHHHHhCCccc---CC-----CceeecccC-----CCCCcEEEEECCEEEEEChHH-eEEecCCCEE
Confidence            999999999999999888854321   11     122235643     258999999999999999999 8887765655


Q ss_pred             EEEEecCCCCceeechhhccceEEEEECCCCEEEEEcCC
Q 036636          297 LLAVAPHDDLVALIGSQQQRDTRFVYDLNIDLLSFVKEN  335 (341)
Q Consensus       297 C~~~~~~~~~~~ilG~~fl~~~yvvfD~~~~riGfa~~~  335 (341)
                      |+++...+.+.+|||++|||++|+|||+|++|||||++.
T Consensus       286 ~~~i~~~~~~~~iLG~~flr~~y~vfD~~~~~IGfAp~a  324 (325)
T d2apra_         286 IAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA  324 (325)
T ss_dssp             EESEEEESSSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             EEEEccCCCCCEEECHHHhCcEEEEEECCCCEEeEEEcC
Confidence            557777556689999999999999999999999999863
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure